BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021235
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
Length = 325
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 20/217 (9%)
Query: 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHN--TEVWLKRDDLSGMQLSGNKVRKL 83
P + LA P L + TPI LPN+ +V++KRDDL+G+ + GNK+RKL
Sbjct: 3 PKIFALLAKFPR--VELIPWETPIQ--YLPNISREIGADVYIKRDDLTGLGIGGNKIRKL 58
Query: 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN 143
E+L+ DA+++GAD +IT+G + SNH +AAK L LD L+LR + L GN
Sbjct: 59 EYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELK-------GN 111
Query: 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIE 203
L+++++G + ++ ++ + + E+L +EGR+PYVIP GG++ IGT GY+
Sbjct: 112 YLLDKIMGIETRVYDAKDSFEL--MKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVR 169
Query: 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
A+ EI Q + VKFD IVVA GSGGT+AGLSLG
Sbjct: 170 AVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLG 201
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 110/197 (55%), Gaps = 11/197 (5%)
Query: 46 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGG 103
PTP+ LP L E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G
Sbjct: 32 PTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGA 89
Query: 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYS 163
IQSNH R A A L L C +L ++ GN L+ L IE+
Sbjct: 90 IQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDP 149
Query: 164 KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223
TL ++ +G RPYVIPVGGS+++G GY+E+ EI QQ + G
Sbjct: 150 DAQLQTLAT----RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEVVG---LSS 202
Query: 224 IVVACGSGGTIAGLSLG 240
+VVA GS GT AGL++G
Sbjct: 203 VVVASGSAGTHAGLAVG 219
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 11/197 (5%)
Query: 46 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGG 103
PTP+ LP L E+++KRDD++ + + GN +RKLEFL+ADA+ +GAD +IT G
Sbjct: 32 PTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNXLRKLEFLVADALREGADTLITAGA 89
Query: 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYS 163
IQSNH R A A L L C +L ++ GN L+ L IE+
Sbjct: 90 IQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDP 149
Query: 164 KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223
TL ++ +G RPYVIPVGGS+++G GY+E+ EI QQ + G
Sbjct: 150 DAQLQTLAT----RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEVVG---LSS 202
Query: 224 IVVACGSGGTIAGLSLG 240
+VVA GS GT AGL++G
Sbjct: 203 VVVASGSAGTHAGLAVG 219
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 11/197 (5%)
Query: 46 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGG 103
PTP+ LP L E+++KRDD++ + + GN +RKLEFL+ADA+ +GAD +IT G
Sbjct: 32 PTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNXLRKLEFLVADALREGADTLITAGA 89
Query: 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYS 163
IQSNH R A A L L C +L ++ GN L+ L IE+
Sbjct: 90 IQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDP 149
Query: 164 KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223
TL ++ +G RPYVIPVGGS+++G GY+E+ EI QQ + G
Sbjct: 150 DAQLQTLAT----RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEVVG---LSS 202
Query: 224 IVVACGSGGTIAGLSLG 240
+VVA GS GT AGL++G
Sbjct: 203 VVVASGSAGTHAGLAVG 219
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1TYZ|A Chain A, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|B Chain B, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|C Chain C, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|D Chain D, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TZ2|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZJ|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZK|A Chain A, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|B Chain B, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|C Chain C, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|D Chain D, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZM|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
Length = 338
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 31 HLAPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLM 87
+L P + + G PTPI +L ++ KR+D SG+ GNK RKLE+L+
Sbjct: 2 NLQRFPRYPLTFG--PTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLI 59
Query: 88 ADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVE 147
+A+AQG D +++IGGIQSN R A A +L + C L+ D +GN+ +
Sbjct: 60 PEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMS 119
Query: 148 RLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIE 203
R++GA + L+ + IG E + G +PY IP G S+ +G G+ E
Sbjct: 120 RILGADVRLVP--DGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAE 177
Query: 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
++ E +L G KFD +VV +G T AG+ +G
Sbjct: 178 EVRAQEAEL-----GFKFDYVVVCSVTGSTQAGMVVG 209
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 40 FSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGAD 96
+ L P+PI N +L V+ KR+D SG+ GNK+RKLE+++ D V
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT 68
Query: 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVGAH 153
+++IGG QSN R A A L C LI + + + + +GN+ + R++GA
Sbjct: 69 HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGAD 128
Query: 154 IELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-IEQ 210
+ +I E+ IG + N L+E L G +PY IP G S + G G++ E I Q
Sbjct: 129 VRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 211 QLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
+++ G+KFD IVV C +G T AG+ G
Sbjct: 186 EVEL---GIKFDKIVVCCVTGSTTAGILAG 212
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 40 FSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGAD 96
+ L P+PI N +L V+ KR+D SG+ GNK+RKLE+++ D V
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT 68
Query: 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVGAH 153
+++IGG QSN R A A L C LI + + + + +GN+ + R++GA
Sbjct: 69 HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGAD 128
Query: 154 IELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-IEQ 210
+ +I E+ IG + N L+E L G +PY IP G S + G G++ E I Q
Sbjct: 129 VRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 211 QLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
+++ G+KFD IVV C +G T AG+ G
Sbjct: 186 EVEL---GIKFDKIVVCCVTGSTTAGILAG 212
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 15/210 (7%)
Query: 40 FSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGAD 96
+ L P+PI N +L V+ KR+D SG+ GN +RKLE+++ D V
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNTLRKLEYIVPDIVEGDYT 68
Query: 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVGAH 153
+++IGG QSN R A A L C LI + + + + +GN+ + R++GA
Sbjct: 69 HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGAD 128
Query: 154 IELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-IEQ 210
+ +I E+ IG + N L+E L G +PY IP G S + G G++ E I Q
Sbjct: 129 VRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 211 QLQTGTGGVKFDDIVVACGSGGTIAGLSLG 240
+++ G+KFD IVV C +G T AG+ G
Sbjct: 186 EVEL---GIKFDKIVVCCVTGSTTAGILAG 212
>pdb|3JQ0|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001299712.1) From Bacteroides Vulgatus Atcc 8482 At
1.13 A Resolution
Length = 493
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 118 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI----------------ELISKEE 161
Y DC L L +KVL+ +DP N + ER G+ E + +
Sbjct: 362 YRYADCLLQLAXAKVLLGEDPTEEINAVRERAYGSKYFNEHKAEIAYPNDNDPEFYTDNK 421
Query: 162 YSKIGSV-TLTNILKEKLLK---EGRRPYVIPVGGSNSIGTWGYIEAIKEIEQ 210
+ K + L ILKE+L + EG+R Y I + G W Y+ EQ
Sbjct: 422 WXKPDNAGALEAILKERLREFXFEGKRWYDIRLLG------WDYVHQYSSAEQ 468
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 22/197 (11%)
Query: 46 PTPIHKWNLPNLPHNTEVWLKRDD-LSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGI 104
PT + K NT ++LKR+D L G N+V L A G II G
Sbjct: 56 PTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALL---AKRMGKTEIIAETG- 111
Query: 105 QSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSK 164
H A+A+A+ L L C + + +K + Q P N+ RL+GA + +
Sbjct: 112 AGQHGVASALASALLGLKCRIYM-GAKDVERQSP----NVFRMRLMGAEVIPVHS----- 161
Query: 165 IGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGV----- 219
GS TL + E L + G Y ++E ++ + T
Sbjct: 162 -GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILERE 220
Query: 220 -KFDDIVVACGSGGTIA 235
+ D V+AC GG+ A
Sbjct: 221 GRLPDAVIACVGGGSNA 237
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 54 LPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 108
LPN E+ LK ++ G V+ ++ L ADA GAD ++TI G++ +
Sbjct: 388 LPNAVSTPELQLKLEE-------GENVKLIDKLRADAKFDGADEVVTIDGLRVEY 435
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase
Length = 387
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 177 KLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG 217
K LKE RP V VGGS ++++ +I QL G G
Sbjct: 176 KALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGG 216
>pdb|1YQ8|A Chain A, Prd1 Vertex Protein P5
Length = 191
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 223 DIVVAC-----GSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 265
D VVAC +GGTI+ L + LG + V FS+C+D +Y
Sbjct: 134 DFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNY 181
>pdb|1YQ5|A Chain A, Prd1 Vertex Protein P5
pdb|1YQ5|B Chain B, Prd1 Vertex Protein P5
pdb|1YQ6|A Chain A, Prd1 Vertex Protein P5
pdb|1YQ6|B Chain B, Prd1 Vertex Protein P5
pdb|1YQ6|C Chain C, Prd1 Vertex Protein P5
Length = 144
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 219 VKF--DDIVVAC-----GSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 265
VK+ D VVAC +GGTI+ L + LG + V FS+C+D +Y
Sbjct: 81 VKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNY 134
>pdb|4AIQ|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f5-1 Variant)
pdb|4B7O|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f5-1 Variant) Apoprotein Form
Length = 745
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 198 TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 246
T YIEAI E++ T TGG+++D V G T++ +L G +
Sbjct: 445 TGAYIEAIHELDGF--TLTGGLRYDRFKVKTHDGKTVSSSNLNPSFGVI 491
>pdb|3LJ5|A Chain A, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|B Chain B, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|C Chain C, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|D Chain D, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|E Chain E, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|F Chain F, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|G Chain G, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|H Chain H, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|I Chain I, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|J Chain J, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|K Chain K, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|L Chain L, Full Length Bacteriophage P22 Portal Protein
Length = 725
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 152 AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQ 211
A ++ + Y I +T T +LK+K L G ++PV G WG++E + E
Sbjct: 267 AERQIKRRRVYKSI--ITCTAVLKDKQLIAGEHIPIVPV-----FGEWGFVEDKEVYEGV 319
Query: 212 LQTGTGGVKFDDIVVACGS 230
++ G + +++++ +
Sbjct: 320 VRLTKDGQRLRNMIMSFNA 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,159,058
Number of Sequences: 62578
Number of extensions: 442753
Number of successful extensions: 1008
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 26
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)