Query 021235
Match_columns 315
No_of_seqs 209 out of 1534
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 100.0 4.2E-46 9.2E-51 340.6 20.6 245 31-288 2-251 (323)
2 PRK03910 D-cysteine desulfhydr 100.0 1.5E-43 3.3E-48 337.3 27.3 259 31-299 2-278 (331)
3 TIGR01275 ACC_deam_rel pyridox 100.0 1.8E-43 4E-48 333.7 27.3 246 41-300 2-262 (311)
4 TIGR01274 ACC_deam 1-aminocycl 100.0 1.4E-42 3.1E-47 331.4 26.8 260 32-299 2-283 (337)
5 COG1171 IlvA Threonine dehydra 100.0 4.5E-44 9.7E-49 337.1 14.2 247 24-300 5-277 (347)
6 PRK14045 1-aminocyclopropane-1 100.0 3.4E-42 7.4E-47 327.8 26.7 225 31-271 8-235 (329)
7 PRK12390 1-aminocyclopropane-1 100.0 4.9E-42 1.1E-46 327.7 25.9 260 32-299 3-284 (337)
8 PLN02556 cysteine synthase/L-3 100.0 1.3E-41 2.9E-46 327.6 21.2 251 24-299 29-304 (368)
9 cd06449 ACCD Aminocyclopropane 100.0 1E-40 2.2E-45 314.7 25.5 247 47-299 1-267 (307)
10 PRK10717 cysteine synthase A; 100.0 1.4E-40 3E-45 316.7 22.6 242 39-299 6-270 (330)
11 PLN02550 threonine dehydratase 100.0 5E-41 1.1E-45 337.5 19.0 238 35-300 98-359 (591)
12 KOG1250 Threonine/serine dehyd 100.0 6.5E-41 1.4E-45 314.6 17.5 254 20-301 40-317 (457)
13 PRK12483 threonine dehydratase 100.0 1.4E-40 3.1E-45 331.9 19.7 242 31-300 22-287 (521)
14 PRK08526 threonine dehydratase 100.0 2.1E-40 4.5E-45 323.0 19.7 233 39-300 13-269 (403)
15 cd01561 CBS_like CBS_like: Thi 100.0 8.2E-40 1.8E-44 306.2 22.6 233 45-300 1-249 (291)
16 TIGR01124 ilvA_2Cterm threonin 100.0 2E-40 4.3E-45 330.4 17.9 235 38-300 9-267 (499)
17 PRK07476 eutB threonine dehydr 100.0 3.7E-40 8E-45 312.9 17.7 233 39-300 12-270 (322)
18 COG0031 CysK Cysteine synthase 100.0 1.5E-39 3.1E-44 301.5 20.5 234 41-298 6-255 (300)
19 TIGR01139 cysK cysteine syntha 100.0 2.7E-39 5.8E-44 303.7 22.1 234 43-300 4-252 (298)
20 PRK11761 cysM cysteine synthas 100.0 1.3E-39 2.9E-44 305.7 19.7 235 39-300 5-249 (296)
21 cd06448 L-Ser-dehyd Serine deh 100.0 1.6E-39 3.5E-44 307.8 20.2 231 46-300 1-258 (316)
22 TIGR01136 cysKM cysteine synth 100.0 3.4E-39 7.3E-44 303.3 21.4 232 43-300 4-252 (299)
23 PRK06382 threonine dehydratase 100.0 1.3E-39 2.8E-44 318.1 19.0 233 39-300 18-274 (406)
24 PLN00011 cysteine synthase 100.0 5E-39 1.1E-43 305.3 21.8 233 42-299 13-262 (323)
25 PLN03013 cysteine synthase 100.0 6.1E-39 1.3E-43 312.1 22.8 237 39-300 116-369 (429)
26 PRK08198 threonine dehydratase 100.0 9.5E-40 2.1E-44 318.9 17.3 232 39-299 15-270 (404)
27 PRK06110 hypothetical protein; 100.0 1.3E-39 2.9E-44 309.1 17.3 232 39-300 14-270 (322)
28 TIGR01138 cysM cysteine syntha 100.0 4E-39 8.7E-44 301.7 20.0 229 43-300 5-245 (290)
29 PRK09224 threonine dehydratase 100.0 3.2E-39 7E-44 322.6 19.9 237 36-300 10-270 (504)
30 TIGR02079 THD1 threonine dehyd 100.0 4E-39 8.7E-44 314.7 18.5 234 39-300 9-269 (409)
31 PLN02565 cysteine synthase 100.0 2E-38 4.3E-43 300.9 21.1 235 40-300 9-261 (322)
32 TIGR01127 ilvA_1Cterm threonin 100.0 6.6E-39 1.4E-43 310.6 17.9 225 47-300 1-249 (380)
33 TIGR02991 ectoine_eutB ectoine 100.0 2.1E-38 4.5E-43 300.3 20.5 233 39-300 12-270 (317)
34 PLN02970 serine racemase 100.0 1.1E-38 2.5E-43 303.4 18.8 233 39-300 20-275 (328)
35 PRK07048 serine/threonine dehy 100.0 7.7E-39 1.7E-43 303.7 17.2 233 39-300 17-273 (321)
36 PRK06608 threonine dehydratase 100.0 2.5E-38 5.4E-43 302.1 19.8 244 25-300 4-272 (338)
37 PLN02356 phosphateglycerate ki 100.0 6.8E-38 1.5E-42 304.6 23.1 242 39-300 46-356 (423)
38 PRK06381 threonine synthase; V 100.0 5.7E-38 1.2E-42 297.4 21.4 191 43-260 12-212 (319)
39 TIGR01137 cysta_beta cystathio 100.0 7.3E-38 1.6E-42 309.5 22.4 236 41-299 6-263 (454)
40 PRK06352 threonine synthase; V 100.0 1.2E-38 2.7E-43 305.7 16.4 232 39-299 21-277 (351)
41 PRK08639 threonine dehydratase 100.0 1.4E-38 2.9E-43 312.1 16.9 237 39-300 18-280 (420)
42 cd01563 Thr-synth_1 Threonine 100.0 4.9E-38 1.1E-42 298.3 19.2 234 39-300 15-282 (324)
43 PRK06721 threonine synthase; R 100.0 8.5E-38 1.8E-42 300.1 19.1 233 39-299 21-277 (352)
44 PRK08638 threonine dehydratase 100.0 6.7E-38 1.5E-42 298.6 17.4 233 39-300 20-276 (333)
45 PRK07334 threonine dehydratase 100.0 1.2E-37 2.6E-42 304.0 18.8 233 39-300 16-270 (403)
46 PRK07409 threonine synthase; V 100.0 1.4E-37 3.1E-42 298.7 18.4 232 39-299 24-281 (353)
47 cd06447 D-Ser-dehyd D-Serine d 100.0 3.2E-37 7E-42 299.5 21.0 237 42-299 48-351 (404)
48 PRK06815 hypothetical protein; 100.0 2.8E-37 6E-42 292.6 20.1 233 39-300 13-270 (317)
49 PRK07591 threonine synthase; V 100.0 3.1E-37 6.8E-42 302.4 20.7 236 38-299 81-350 (421)
50 PRK02991 D-serine dehydratase; 100.0 7.9E-37 1.7E-41 299.9 21.0 244 36-300 65-375 (441)
51 PRK08813 threonine dehydratase 100.0 7.3E-37 1.6E-41 292.1 20.1 225 39-300 32-277 (349)
52 cd01562 Thr-dehyd Threonine de 100.0 3.4E-37 7.3E-42 289.6 17.4 231 40-299 11-265 (304)
53 PRK08246 threonine dehydratase 100.0 4.7E-37 1E-41 290.2 18.1 240 25-299 4-265 (310)
54 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.3E-36 2.8E-41 297.4 19.8 245 34-300 58-370 (431)
55 PRK08197 threonine synthase; V 100.0 1.8E-36 3.9E-41 295.0 20.1 234 39-299 72-340 (394)
56 cd00640 Trp-synth-beta_II Tryp 100.0 8.4E-36 1.8E-40 271.9 23.2 183 47-255 1-188 (244)
57 PRK08329 threonine synthase; V 100.0 5.6E-36 1.2E-40 287.0 20.2 225 39-297 57-302 (347)
58 PRK06450 threonine synthase; V 100.0 1.5E-35 3.2E-40 282.9 22.8 223 39-298 51-301 (338)
59 PRK06260 threonine synthase; V 100.0 5.7E-36 1.2E-40 291.7 19.2 233 39-299 60-327 (397)
60 PRK08206 diaminopropionate amm 100.0 7.4E-36 1.6E-40 290.8 17.8 235 41-299 39-330 (399)
61 PRK05638 threonine synthase; V 100.0 8.4E-35 1.8E-39 287.1 22.4 192 39-261 59-258 (442)
62 TIGR00260 thrC threonine synth 100.0 2E-35 4.3E-40 280.9 16.4 232 39-300 16-284 (328)
63 TIGR00263 trpB tryptophan synt 100.0 3.9E-34 8.4E-39 277.7 24.1 202 41-259 45-256 (385)
64 KOG1251 Serine racemase [Signa 100.0 3.1E-35 6.7E-40 261.5 14.6 227 39-294 18-268 (323)
65 TIGR01747 diampropi_NH3ly diam 100.0 2.4E-34 5.2E-39 278.0 20.3 233 45-299 21-311 (376)
66 PRK04346 tryptophan synthase s 100.0 3.7E-34 8E-39 277.6 20.4 214 26-259 41-264 (397)
67 PRK13028 tryptophan synthase s 100.0 3.2E-34 7E-39 278.4 19.7 254 26-299 45-348 (402)
68 cd06446 Trp-synth_B Tryptophan 100.0 6.2E-34 1.3E-38 274.6 21.4 242 43-299 31-320 (365)
69 PLN02618 tryptophan synthase, 100.0 9.3E-34 2E-38 275.4 20.7 203 39-258 58-276 (410)
70 TIGR03528 2_3_DAP_am_ly diamin 100.0 7.1E-34 1.5E-38 276.4 19.9 233 45-299 40-330 (396)
71 PF00291 PALP: Pyridoxal-phosp 100.0 2.3E-34 4.9E-39 269.6 15.1 234 41-300 2-267 (306)
72 TIGR01415 trpB_rel pyridoxal-p 100.0 6.9E-33 1.5E-37 270.9 21.9 209 39-262 61-290 (419)
73 PRK13802 bifunctional indole-3 100.0 7.1E-33 1.5E-37 283.0 22.1 230 26-275 309-554 (695)
74 PLN02569 threonine synthase 100.0 1.3E-32 2.7E-37 273.1 21.7 231 39-296 126-396 (484)
75 PRK12391 tryptophan synthase s 100.0 9.3E-32 2E-36 263.4 23.3 205 43-262 74-299 (427)
76 PRK13803 bifunctional phosphor 100.0 3.5E-32 7.7E-37 277.2 20.4 215 26-258 254-475 (610)
77 KOG1252 Cystathionine beta-syn 100.0 9.1E-33 2E-37 255.9 10.2 225 41-288 47-291 (362)
78 KOG1481 Cysteine synthase [Ami 100.0 1.9E-30 4E-35 234.7 11.7 232 39-289 42-311 (391)
79 TIGR03844 cysteate_syn cysteat 100.0 2.1E-29 4.5E-34 245.2 19.4 230 42-299 58-339 (398)
80 COG0133 TrpB Tryptophan syntha 99.9 2.3E-23 5.1E-28 191.8 14.9 225 26-268 39-270 (396)
81 COG0498 ThrC Threonine synthas 99.9 5.9E-22 1.3E-26 192.2 17.3 234 39-299 69-333 (411)
82 KOG1395 Tryptophan synthase be 99.8 4.8E-20 1E-24 171.7 9.2 207 42-263 118-333 (477)
83 COG1350 Predicted alternative 99.7 7.4E-16 1.6E-20 142.8 14.0 202 43-260 75-298 (432)
84 PRK09225 threonine synthase; V 99.6 9.7E-15 2.1E-19 144.6 18.1 181 46-254 88-279 (462)
85 cd01560 Thr-synth_2 Threonine 99.6 1.9E-14 4.2E-19 142.5 18.4 175 61-256 95-283 (460)
86 COG3048 DsdA D-serine dehydrat 99.1 4.5E-10 9.8E-15 103.9 12.4 210 33-262 65-313 (443)
87 PRK15408 autoinducer 2-binding 94.3 5 0.00011 38.3 18.0 159 85-254 71-242 (336)
88 PRK15395 methyl-galactoside AB 83.9 38 0.00083 31.8 17.4 79 220-312 225-304 (330)
89 PF00070 Pyr_redox: Pyridine n 79.0 8.3 0.00018 28.4 6.2 33 98-132 2-34 (80)
90 cd01011 nicotinamidase Nicotin 78.3 5.6 0.00012 34.9 5.9 63 90-155 133-196 (196)
91 PRK12743 oxidoreductase; Provi 76.8 44 0.00095 29.8 11.5 54 98-158 5-58 (256)
92 COG0300 DltE Short-chain dehyd 74.5 29 0.00063 32.3 9.7 74 96-181 8-81 (265)
93 cd01012 YcaC_related YcaC rela 74.1 13 0.00028 31.2 6.8 62 91-155 84-146 (157)
94 KOG0025 Zn2+-binding dehydroge 72.8 13 0.00029 35.2 6.9 71 82-160 147-218 (354)
95 PRK11609 nicotinamidase/pyrazi 72.6 20 0.00042 31.7 7.9 64 91-156 138-203 (212)
96 PF00107 ADH_zinc_N: Zinc-bind 72.1 24 0.00052 27.9 7.7 39 109-158 3-41 (130)
97 PF03808 Glyco_tran_WecB: Glyc 70.4 59 0.0013 27.8 10.2 96 85-192 39-135 (172)
98 PTZ00331 alpha/beta hydrolase; 69.3 18 0.00038 32.3 6.9 62 91-155 142-204 (212)
99 TIGR01064 pyruv_kin pyruvate k 68.2 1.2E+02 0.0026 30.7 13.2 132 110-257 260-406 (473)
100 cd06324 PBP1_ABC_sugar_binding 66.5 1.1E+02 0.0023 28.1 17.0 36 219-256 201-240 (305)
101 PF00857 Isochorismatase: Isoc 65.5 8.6 0.00019 32.4 3.9 84 60-156 86-171 (174)
102 PF00106 adh_short: short chai 64.9 76 0.0016 25.9 10.2 57 98-159 3-59 (167)
103 PF01210 NAD_Gly3P_dh_N: NAD-d 64.4 9.2 0.0002 32.2 3.9 31 98-130 2-32 (157)
104 TIGR03128 RuMP_HxlA 3-hexulose 63.8 99 0.0021 26.9 10.7 66 86-159 68-134 (206)
105 PF03808 Glyco_tran_WecB: Glyc 62.3 40 0.00086 28.9 7.5 101 109-234 13-115 (172)
106 PRK05866 short chain dehydroge 61.6 1E+02 0.0022 28.5 10.6 32 97-129 42-73 (293)
107 COG0159 TrpA Tryptophan syntha 61.4 1.4E+02 0.0031 27.8 12.5 107 80-195 108-217 (265)
108 CHL00200 trpA tryptophan synth 61.1 1.4E+02 0.003 27.7 14.6 106 81-195 106-214 (263)
109 COG1691 NCAIR mutase (PurE)-re 60.2 55 0.0012 29.9 8.0 93 197-301 154-249 (254)
110 COG0604 Qor NADPH:quinone redu 59.7 1.5E+02 0.0033 28.1 11.7 50 96-157 144-193 (326)
111 PF11814 DUF3335: Peptidase_C3 59.5 23 0.00049 31.8 5.5 42 91-132 38-79 (207)
112 cd06317 PBP1_ABC_sugar_binding 59.4 1.3E+02 0.0027 26.6 16.6 205 82-309 44-264 (275)
113 cd01013 isochorismatase Isocho 59.1 24 0.00051 31.1 5.7 62 91-155 138-200 (203)
114 cd02202 FtsZ_type2 FtsZ is a G 59.0 34 0.00074 33.0 7.2 85 204-290 82-172 (349)
115 TIGR03366 HpnZ_proposed putati 58.7 38 0.00082 31.0 7.2 49 96-156 122-170 (280)
116 TIGR02822 adh_fam_2 zinc-bindi 58.7 30 0.00065 32.6 6.7 48 96-156 167-214 (329)
117 cd01015 CSHase N-carbamoylsarc 58.3 31 0.00068 29.5 6.2 62 60-131 88-150 (179)
118 TIGR00511 ribulose_e2b2 ribose 58.0 43 0.00092 31.7 7.5 56 96-159 117-174 (301)
119 cd06533 Glyco_transf_WecG_TagA 57.8 97 0.0021 26.5 9.2 120 109-255 11-133 (171)
120 PRK07109 short chain dehydroge 56.7 1.8E+02 0.0039 27.5 14.5 55 97-159 10-64 (334)
121 PF05368 NmrA: NmrA-like famil 56.5 27 0.00059 30.8 5.7 45 104-157 6-50 (233)
122 PRK08535 translation initiatio 55.5 54 0.0012 31.1 7.8 57 96-160 122-180 (310)
123 PF04127 DFP: DNA / pantothena 55.1 20 0.00044 31.4 4.5 27 104-130 27-53 (185)
124 PF00107 ADH_zinc_N: Zinc-bind 54.5 22 0.00047 28.2 4.3 86 144-257 7-92 (130)
125 PRK09880 L-idonate 5-dehydroge 53.0 48 0.001 31.2 7.1 49 96-156 171-219 (343)
126 PRK07478 short chain dehydroge 52.6 1.1E+02 0.0024 27.0 9.1 31 97-129 9-39 (254)
127 PLN02621 nicotinamidase 52.6 39 0.00084 29.5 5.9 62 91-155 123-185 (197)
128 PRK07370 enoyl-(acyl carrier p 52.4 1.7E+02 0.0038 26.1 10.8 31 96-127 8-39 (258)
129 PRK08335 translation initiatio 52.3 71 0.0015 29.9 7.9 57 96-160 111-169 (275)
130 COG0299 PurN Folate-dependent 51.7 1.8E+02 0.0038 26.0 9.7 94 99-213 5-101 (200)
131 PTZ00142 6-phosphogluconate de 51.4 2.7E+02 0.0059 28.1 13.5 23 106-128 10-32 (470)
132 TIGR02825 B4_12hDH leukotriene 51.2 51 0.0011 30.6 6.9 50 96-157 140-189 (325)
133 PF00465 Fe-ADH: Iron-containi 50.8 27 0.00058 33.6 5.0 100 144-258 15-132 (366)
134 PF00290 Trp_syntA: Tryptophan 50.6 2.1E+02 0.0046 26.5 13.1 52 80-132 101-152 (259)
135 PRK12748 3-ketoacyl-(acyl-carr 50.5 1.8E+02 0.0039 25.7 10.7 33 97-129 7-40 (256)
136 PRK08063 enoyl-(acyl carrier p 49.9 1.8E+02 0.0038 25.5 11.2 55 97-158 6-60 (250)
137 cd08294 leukotriene_B4_DH_like 49.7 43 0.00094 30.8 6.1 49 96-156 145-193 (329)
138 PRK08227 autoinducer 2 aldolas 49.5 71 0.0015 29.7 7.3 98 60-159 74-179 (264)
139 TIGR01316 gltA glutamate synth 49.3 60 0.0013 32.2 7.3 56 96-156 273-328 (449)
140 cd06301 PBP1_rhizopine_binding 49.2 1.9E+02 0.0041 25.5 17.5 160 85-256 47-220 (272)
141 TIGR00561 pntA NAD(P) transhyd 49.0 1.1E+02 0.0023 31.4 9.1 50 96-158 165-214 (511)
142 TIGR00670 asp_carb_tr aspartat 48.8 62 0.0013 30.6 7.0 56 97-158 152-208 (301)
143 TIGR00524 eIF-2B_rel eIF-2B al 48.5 40 0.00087 32.0 5.7 42 112-159 142-186 (303)
144 cd08189 Fe-ADH5 Iron-containin 48.2 2.1E+02 0.0046 27.6 10.8 26 204-234 71-96 (374)
145 PRK06139 short chain dehydroge 48.2 1.1E+02 0.0024 29.0 8.7 54 97-158 9-62 (330)
146 COG0206 FtsZ Cell division GTP 48.1 35 0.00075 33.0 5.2 90 193-290 73-169 (338)
147 cd06312 PBP1_ABC_sugar_binding 48.0 2E+02 0.0043 25.5 18.5 204 81-310 44-262 (271)
148 COG0800 Eda 2-keto-3-deoxy-6-p 48.0 2.1E+02 0.0046 25.8 9.9 69 80-159 24-93 (211)
149 PRK08862 short chain dehydroge 48.0 1.7E+02 0.0036 25.9 9.4 54 97-158 7-60 (227)
150 PRK09424 pntA NAD(P) transhydr 47.9 55 0.0012 33.4 6.9 50 96-158 166-215 (509)
151 TIGR01162 purE phosphoribosyla 47.8 61 0.0013 27.8 6.1 57 206-270 43-99 (156)
152 cd08230 glucose_DH Glucose deh 47.5 61 0.0013 30.6 6.9 50 96-155 174-223 (355)
153 cd04726 KGPDC_HPS 3-Keto-L-gul 47.3 1.4E+02 0.003 25.7 8.6 65 86-158 69-133 (202)
154 PRK06947 glucose-1-dehydrogena 47.2 2E+02 0.0043 25.2 10.9 56 97-159 4-59 (248)
155 KOG1499 Protein arginine N-met 47.0 35 0.00076 33.0 5.0 35 222-259 61-95 (346)
156 cd08295 double_bond_reductase_ 46.9 48 0.001 31.0 6.0 49 96-156 153-202 (338)
157 TIGR00696 wecB_tagA_cpsF bacte 46.8 1.4E+02 0.0031 25.8 8.5 98 109-232 13-112 (177)
158 PF03853 YjeF_N: YjeF-related 46.8 65 0.0014 27.5 6.3 58 96-156 27-86 (169)
159 cd08291 ETR_like_1 2-enoyl thi 46.6 83 0.0018 29.1 7.5 52 94-157 143-194 (324)
160 cd00401 AdoHcyase S-adenosyl-L 45.9 56 0.0012 32.4 6.4 47 96-155 203-249 (413)
161 PF13478 XdhC_C: XdhC Rossmann 45.8 18 0.00039 30.0 2.6 30 99-130 2-31 (136)
162 cd06320 PBP1_allose_binding Pe 45.1 2.2E+02 0.0048 25.2 16.1 159 85-256 48-218 (275)
163 PF04198 Sugar-bind: Putative 44.8 1.8E+02 0.0039 26.6 9.3 94 174-275 9-109 (255)
164 COG1167 ARO8 Transcriptional r 44.1 1.7E+02 0.0037 29.2 9.7 84 97-198 157-242 (459)
165 cd06319 PBP1_ABC_sugar_binding 44.0 2.3E+02 0.0049 25.0 14.6 157 86-255 47-220 (277)
166 PRK12831 putative oxidoreducta 44.0 79 0.0017 31.6 7.3 56 96-156 282-337 (464)
167 KOG1198 Zinc-binding oxidoredu 44.0 1.7E+02 0.0036 28.3 9.3 49 96-156 159-207 (347)
168 TIGR03614 RutB pyrimidine util 43.9 56 0.0012 29.2 5.7 41 91-131 147-187 (226)
169 cd06283 PBP1_RegR_EndR_KdgR_li 43.6 2.2E+02 0.0048 24.8 19.4 35 220-256 178-216 (267)
170 cd08239 THR_DH_like L-threonin 43.3 64 0.0014 30.0 6.2 49 96-156 165-213 (339)
171 PRK05867 short chain dehydroge 43.2 1.9E+02 0.0042 25.5 9.1 30 97-128 12-41 (253)
172 PRK06202 hypothetical protein; 43.1 30 0.00064 30.9 3.7 39 221-259 62-100 (232)
173 PF02527 GidB: rRNA small subu 43.1 25 0.00054 30.8 3.1 42 224-267 51-92 (184)
174 TIGR01307 pgm_bpd_ind 2,3-bisp 42.9 1.5E+02 0.0032 30.3 9.0 50 82-131 93-151 (501)
175 cd08296 CAD_like Cinnamyl alco 42.7 86 0.0019 29.2 7.0 48 96-156 165-212 (333)
176 PRK10624 L-1,2-propanediol oxi 42.6 1.3E+02 0.0028 29.2 8.4 53 172-234 48-100 (382)
177 TIGR00872 gnd_rel 6-phosphoglu 42.5 2.8E+02 0.0062 25.7 14.3 41 262-305 140-180 (298)
178 PRK09206 pyruvate kinase; Prov 42.5 3.7E+02 0.008 27.2 11.7 133 110-256 261-402 (470)
179 TIGR03201 dearomat_had 6-hydro 42.4 71 0.0015 30.1 6.4 48 96-156 168-215 (349)
180 PRK08643 acetoin reductase; Va 42.1 2.2E+02 0.0047 25.1 9.3 29 98-128 6-34 (256)
181 cd01014 nicotinamidase_related 42.1 62 0.0014 26.9 5.4 42 91-132 95-136 (155)
182 KOG2960 Protein involved in th 41.9 23 0.0005 32.3 2.7 70 220-291 76-159 (328)
183 KOG0538 Glycolate oxidase [Ene 41.9 1.5E+02 0.0033 28.4 8.2 58 90-160 240-309 (363)
184 PRK06505 enoyl-(acyl carrier p 41.2 2.7E+02 0.0059 25.2 10.3 32 96-128 9-41 (271)
185 PRK03692 putative UDP-N-acetyl 40.8 2.9E+02 0.0062 25.3 10.2 15 144-158 150-164 (243)
186 PRK08085 gluconate 5-dehydroge 40.7 2.2E+02 0.0047 25.1 9.1 31 96-128 11-41 (254)
187 PRK08159 enoyl-(acyl carrier p 40.6 2.8E+02 0.0061 25.1 10.0 31 96-127 12-43 (272)
188 PF04989 CmcI: Cephalosporin h 40.4 88 0.0019 28.1 6.2 46 204-256 23-69 (206)
189 COG0623 FabI Enoyl-[acyl-carri 40.4 2.1E+02 0.0046 26.4 8.6 43 233-275 122-178 (259)
190 PRK15454 ethanol dehydrogenase 40.1 1.7E+02 0.0036 28.7 8.7 14 220-234 106-119 (395)
191 PRK07984 enoyl-(acyl carrier p 39.8 2.9E+02 0.0062 25.0 10.2 31 96-127 8-39 (262)
192 cd08193 HVD 5-hydroxyvalerate 39.8 1.6E+02 0.0034 28.5 8.5 26 204-234 71-96 (376)
193 PF02737 3HCDH_N: 3-hydroxyacy 39.7 47 0.001 28.7 4.3 27 101-129 5-31 (180)
194 PF00185 OTCace: Aspartate/orn 39.6 43 0.00093 28.4 4.0 33 98-130 5-37 (158)
195 PF00890 FAD_binding_2: FAD bi 39.6 36 0.00078 32.9 4.0 29 99-129 3-31 (417)
196 TIGR02819 fdhA_non_GSH formald 39.6 1E+02 0.0023 29.9 7.2 48 96-155 187-234 (393)
197 PRK08278 short chain dehydroge 39.4 2.5E+02 0.0055 25.2 9.4 33 97-130 8-40 (273)
198 TIGR02637 RhaS rhamnose ABC tr 39.4 2.9E+02 0.0064 25.0 18.2 161 84-255 46-220 (302)
199 PRK10309 galactitol-1-phosphat 39.4 85 0.0018 29.4 6.4 49 96-156 162-210 (347)
200 cd08197 DOIS 2-deoxy-scyllo-in 39.3 3.6E+02 0.0078 26.0 11.0 11 223-233 86-96 (355)
201 KOG0780 Signal recognition par 39.3 4.1E+02 0.0088 26.6 13.9 151 76-244 68-239 (483)
202 cd08300 alcohol_DH_class_III c 39.1 83 0.0018 29.9 6.4 49 96-156 188-236 (368)
203 cd08205 RuBisCO_IV_RLP Ribulos 39.0 3.8E+02 0.0081 26.1 14.4 71 60-131 159-234 (367)
204 TIGR00512 salvage_mtnA S-methy 39.0 2.1E+02 0.0046 27.5 9.0 45 109-159 167-214 (331)
205 PF07279 DUF1442: Protein of u 38.9 95 0.0021 28.1 6.2 43 90-132 35-81 (218)
206 PRK09330 cell division protein 38.9 99 0.0021 30.4 6.8 79 204-290 87-171 (384)
207 cd08192 Fe-ADH7 Iron-containin 38.8 1.6E+02 0.0034 28.4 8.3 25 205-234 70-94 (370)
208 PF13450 NAD_binding_8: NAD(P) 38.8 55 0.0012 23.5 3.9 24 106-129 5-28 (68)
209 cd06268 PBP1_ABC_transporter_L 38.8 2.7E+02 0.0058 24.4 15.2 157 87-261 59-230 (298)
210 PRK13018 cell division protein 38.7 59 0.0013 31.9 5.2 80 205-292 103-188 (378)
211 PRK12859 3-ketoacyl-(acyl-carr 38.6 2.8E+02 0.0061 24.6 11.4 31 97-127 8-39 (256)
212 COG1759 5-formaminoimidazole-4 38.5 1.2E+02 0.0026 29.3 7.0 66 106-191 26-93 (361)
213 PRK11440 putative hydrolase; P 38.5 82 0.0018 27.1 5.7 41 91-131 117-157 (188)
214 TIGR01357 aroB 3-dehydroquinat 38.4 2.8E+02 0.0061 26.3 9.9 31 223-255 83-115 (344)
215 cd08292 ETR_like_2 2-enoyl thi 38.4 1.3E+02 0.0027 27.5 7.3 49 96-156 141-189 (324)
216 cd06450 DOPA_deC_like DOPA dec 38.3 3.3E+02 0.0071 25.2 10.8 54 97-159 60-124 (345)
217 PRK07097 gluconate 5-dehydroge 38.0 2.5E+02 0.0054 25.0 9.1 53 97-158 13-65 (265)
218 TIGR02853 spore_dpaA dipicolin 37.9 2E+02 0.0043 26.9 8.6 63 60-128 113-182 (287)
219 cd08301 alcohol_DH_plants Plan 37.9 90 0.0019 29.6 6.4 49 96-156 189-237 (369)
220 COG0826 Collagenase and relate 37.8 3.9E+02 0.0084 25.9 10.7 100 143-256 18-123 (347)
221 PF01041 DegT_DnrJ_EryC1: DegT 37.8 1.5E+02 0.0033 28.2 8.0 69 77-159 24-94 (363)
222 KOG1201 Hydroxysteroid 17-beta 37.5 2.8E+02 0.006 26.4 9.3 74 94-182 38-112 (300)
223 cd06280 PBP1_LacI_like_4 Ligan 37.5 2.8E+02 0.0062 24.3 19.9 36 219-256 171-210 (263)
224 PF13649 Methyltransf_25: Meth 37.5 36 0.00077 25.9 2.9 33 226-259 4-36 (101)
225 cd08289 MDR_yhfp_like Yhfp put 37.2 90 0.0019 28.6 6.1 49 96-156 148-196 (326)
226 cd08281 liver_ADH_like1 Zinc-d 37.2 85 0.0018 29.9 6.1 49 96-156 193-241 (371)
227 PF06506 PrpR_N: Propionate ca 37.1 57 0.0012 27.9 4.5 39 82-128 113-151 (176)
228 cd08274 MDR9 Medium chain dehy 37.1 1.3E+02 0.0028 27.9 7.3 47 96-155 179-225 (350)
229 PRK08936 glucose-1-dehydrogena 37.1 3E+02 0.0064 24.4 11.0 55 97-158 9-63 (261)
230 cd08551 Fe-ADH iron-containing 37.0 1.8E+02 0.004 27.9 8.4 26 204-234 68-93 (370)
231 KOG0023 Alcohol dehydrogenase, 37.0 1.3E+02 0.0028 29.1 7.0 46 103-159 189-234 (360)
232 PF00731 AIRC: AIR carboxylase 37.0 1.1E+02 0.0025 25.9 6.1 46 220-269 55-100 (150)
233 COG1597 LCB5 Sphingosine kinas 36.9 1E+02 0.0022 29.0 6.5 77 169-261 20-96 (301)
234 PRK07666 fabG 3-ketoacyl-(acyl 36.9 2.8E+02 0.006 24.1 9.0 31 98-129 10-40 (239)
235 PRK07814 short chain dehydroge 36.9 2.7E+02 0.0059 24.7 9.2 32 97-129 12-43 (263)
236 TIGR02964 xanthine_xdhC xanthi 36.8 48 0.001 30.4 4.1 31 96-128 101-131 (246)
237 PLN03154 putative allyl alcoho 36.8 77 0.0017 30.1 5.7 49 96-156 160-209 (348)
238 cd06284 PBP1_LacI_like_6 Ligan 36.7 2.9E+02 0.0062 24.1 15.0 35 219-255 175-213 (267)
239 PRK06124 gluconate 5-dehydroge 36.6 2.8E+02 0.006 24.4 9.1 32 97-129 13-44 (256)
240 PLN02263 serine decarboxylase 36.6 3.6E+02 0.0078 27.3 10.6 54 96-159 154-207 (470)
241 PRK07533 enoyl-(acyl carrier p 36.6 3.1E+02 0.0067 24.4 10.3 32 96-128 12-44 (258)
242 cd06309 PBP1_YtfQ_like Peripla 36.5 3E+02 0.0065 24.3 16.0 162 84-256 45-223 (273)
243 cd08270 MDR4 Medium chain dehy 36.4 1.5E+02 0.0032 26.8 7.4 48 96-155 134-181 (305)
244 PRK13982 bifunctional SbtC-lik 36.3 51 0.0011 33.3 4.5 35 93-127 255-303 (475)
245 cd08256 Zn_ADH2 Alcohol dehydr 36.1 1.1E+02 0.0025 28.5 6.8 49 96-156 176-224 (350)
246 TIGR03702 lip_kinase_YegS lipi 36.0 87 0.0019 29.1 5.8 40 221-261 53-93 (293)
247 PLN02591 tryptophan synthase 36.0 3.5E+02 0.0076 24.9 13.1 50 81-131 93-142 (250)
248 PRK06847 hypothetical protein; 36.0 49 0.0011 31.4 4.2 30 97-128 6-35 (375)
249 cd01540 PBP1_arabinose_binding 35.9 3.2E+02 0.0069 24.3 15.7 42 86-128 46-87 (289)
250 cd08233 butanediol_DH_like (2R 35.8 1.2E+02 0.0027 28.3 7.0 49 96-156 174-222 (351)
251 PLN02740 Alcohol dehydrogenase 35.7 1E+02 0.0022 29.6 6.4 49 96-156 200-248 (381)
252 PF13561 adh_short_C2: Enoyl-( 35.5 1.8E+02 0.0039 25.6 7.6 48 105-158 5-52 (241)
253 PF00282 Pyridoxal_deC: Pyrido 35.5 4.2E+02 0.009 25.7 10.7 82 96-186 105-196 (373)
254 TIGR02818 adh_III_F_hyde S-(hy 35.5 97 0.0021 29.5 6.2 49 96-156 187-235 (368)
255 cd00288 Pyruvate_Kinase Pyruva 35.5 4.9E+02 0.011 26.4 11.3 133 110-256 262-407 (480)
256 cd05280 MDR_yhdh_yhfp Yhdh and 35.3 1.8E+02 0.0039 26.4 7.9 49 96-156 148-196 (325)
257 cd08181 PPD-like 1,3-propanedi 35.3 2.3E+02 0.0049 27.2 8.7 47 205-257 72-134 (357)
258 COG1184 GCD2 Translation initi 35.1 1E+02 0.0022 29.4 6.0 58 96-159 121-178 (301)
259 PRK08594 enoyl-(acyl carrier p 35.1 3.3E+02 0.0072 24.3 9.9 32 96-128 9-41 (257)
260 PRK12935 acetoacetyl-CoA reduc 34.8 3.1E+02 0.0067 23.9 11.1 56 97-159 8-63 (247)
261 PF12831 FAD_oxidored: FAD dep 34.7 45 0.00098 32.9 3.9 31 98-130 2-32 (428)
262 TIGR01481 ccpA catabolite cont 34.5 3.6E+02 0.0079 24.6 18.6 35 220-256 236-274 (329)
263 PRK08217 fabG 3-ketoacyl-(acyl 34.5 3.1E+02 0.0067 23.8 9.1 54 96-158 7-60 (253)
264 PRK05557 fabG 3-ketoacyl-(acyl 34.5 3E+02 0.0065 23.7 11.3 32 97-129 7-38 (248)
265 PRK08862 short chain dehydroge 34.4 1.4E+02 0.0031 26.3 6.8 37 88-126 23-59 (227)
266 PRK13656 trans-2-enoyl-CoA red 34.4 4.7E+02 0.01 25.9 12.7 41 182-231 102-142 (398)
267 PRK07109 short chain dehydroge 34.4 2.7E+02 0.0058 26.2 9.0 71 145-231 26-96 (334)
268 PRK12481 2-deoxy-D-gluconate 3 34.3 1.7E+02 0.0037 26.0 7.3 51 97-158 11-61 (251)
269 cd08288 MDR_yhdh Yhdh putative 34.3 1.1E+02 0.0024 28.0 6.3 49 96-156 148-196 (324)
270 PLN02743 nicotinamidase 34.3 71 0.0015 29.2 4.8 40 91-131 147-195 (239)
271 TIGR00873 gnd 6-phosphoglucona 34.0 5E+02 0.011 26.1 13.4 23 106-128 8-30 (467)
272 TIGR02415 23BDH acetoin reduct 33.9 3.2E+02 0.007 23.8 9.0 53 98-158 3-55 (254)
273 COG0683 LivK ABC-type branched 33.6 4.3E+02 0.0092 25.2 12.3 150 92-259 76-241 (366)
274 COG1751 Uncharacterized conser 33.6 2.7E+02 0.0058 24.1 7.6 80 77-158 10-90 (186)
275 cd01075 NAD_bind_Leu_Phe_Val_D 33.6 1.5E+02 0.0032 26.1 6.6 44 81-126 7-57 (200)
276 cd08293 PTGR2 Prostaglandin re 33.5 1.2E+02 0.0026 28.2 6.4 50 96-157 156-207 (345)
277 PRK05876 short chain dehydroge 33.5 3.2E+02 0.0068 24.8 9.1 53 97-158 9-61 (275)
278 cd06307 PBP1_uncharacterized_s 33.5 3.4E+02 0.0074 24.0 16.5 157 85-256 50-221 (275)
279 PLN02178 cinnamyl-alcohol dehy 33.5 1.1E+02 0.0025 29.4 6.3 49 96-156 180-228 (375)
280 PRK08690 enoyl-(acyl carrier p 33.4 3.5E+02 0.0076 24.1 10.0 31 96-127 8-39 (261)
281 PF00732 GMC_oxred_N: GMC oxid 33.3 39 0.00084 31.0 2.9 37 221-260 1-37 (296)
282 COG0026 PurK Phosphoribosylami 33.3 71 0.0015 31.2 4.7 28 101-130 7-34 (375)
283 PF05185 PRMT5: PRMT5 arginine 33.2 42 0.00091 33.6 3.3 42 221-262 188-229 (448)
284 cd08243 quinone_oxidoreductase 33.1 1.1E+02 0.0024 27.6 6.0 49 96-156 144-192 (320)
285 PF01008 IF-2B: Initiation fac 33.0 1.2E+02 0.0027 27.8 6.3 57 96-160 109-167 (282)
286 KOG1238 Glucose dehydrogenase/ 32.8 59 0.0013 34.0 4.3 38 219-260 56-94 (623)
287 cd00431 cysteine_hydrolases Cy 32.8 1.1E+02 0.0024 25.2 5.5 41 91-131 106-146 (161)
288 PRK05650 short chain dehydroge 32.8 3.4E+02 0.0073 24.2 9.1 31 98-129 3-33 (270)
289 PRK13886 conjugal transfer pro 32.6 3.9E+02 0.0085 24.4 13.4 128 106-253 17-151 (241)
290 PRK08334 translation initiatio 32.6 1.7E+02 0.0037 28.5 7.3 23 109-131 180-202 (356)
291 cd06344 PBP1_ABC_ligand_bindin 32.6 4E+02 0.0087 24.5 17.3 38 87-126 58-96 (332)
292 TIGR00215 lpxB lipid-A-disacch 32.6 1.2E+02 0.0025 29.5 6.3 37 91-129 86-122 (385)
293 TIGR03451 mycoS_dep_FDH mycoth 32.5 1.3E+02 0.0027 28.5 6.5 49 96-156 178-226 (358)
294 cd08285 NADP_ADH NADP(H)-depen 32.5 1.4E+02 0.0031 27.9 6.7 49 96-156 168-216 (351)
295 COG1063 Tdh Threonine dehydrog 32.3 1.3E+02 0.0028 28.8 6.5 51 97-159 171-222 (350)
296 PLN02586 probable cinnamyl alc 32.2 1.4E+02 0.003 28.5 6.7 49 96-156 185-233 (360)
297 PF01262 AlaDh_PNT_C: Alanine 32.2 1.1E+02 0.0024 25.8 5.5 49 97-158 22-70 (168)
298 cd08187 BDH Butanol dehydrogen 32.2 2E+02 0.0043 27.9 7.8 35 220-256 86-137 (382)
299 PRK13054 lipid kinase; Reviewe 32.1 1E+02 0.0023 28.6 5.7 40 221-261 57-97 (300)
300 PF02310 B12-binding: B12 bind 32.1 2.4E+02 0.0052 21.8 7.4 47 206-256 41-90 (121)
301 PRK08416 7-alpha-hydroxysteroi 32.0 3.6E+02 0.0079 23.9 11.1 31 97-128 10-40 (260)
302 cd08246 crotonyl_coA_red croto 31.6 1.1E+02 0.0025 29.2 6.0 49 96-156 195-243 (393)
303 TIGR01751 crot-CoA-red crotony 31.5 1.1E+02 0.0024 29.5 5.9 49 96-156 191-239 (398)
304 KOG2862 Alanine-glyoxylate ami 31.4 1.7E+02 0.0037 28.2 6.8 47 144-194 108-154 (385)
305 PRK08226 short chain dehydroge 31.3 3.7E+02 0.0079 23.7 9.3 31 97-128 8-38 (263)
306 cd06292 PBP1_LacI_like_10 Liga 31.3 3.6E+02 0.0079 23.6 19.4 156 86-256 47-219 (273)
307 PF00391 PEP-utilizers: PEP-ut 31.3 76 0.0016 23.5 3.7 34 92-128 28-61 (80)
308 PRK06701 short chain dehydroge 31.2 4.1E+02 0.0089 24.2 11.3 54 97-158 49-102 (290)
309 PRK09860 putative alcohol dehy 31.1 2.8E+02 0.0061 27.0 8.7 14 220-234 88-101 (383)
310 PRK05599 hypothetical protein; 31.1 2.8E+02 0.006 24.6 8.1 28 98-128 4-31 (246)
311 cd02191 FtsZ FtsZ is a GTPase 31.0 2E+02 0.0044 27.1 7.4 37 220-258 84-125 (303)
312 PRK05720 mtnA methylthioribose 31.0 1.8E+02 0.004 28.1 7.2 43 111-159 169-214 (344)
313 TIGR01182 eda Entner-Doudoroff 31.0 3.8E+02 0.0083 23.8 9.2 90 87-199 73-163 (204)
314 PF00072 Response_reg: Respons 30.9 2E+02 0.0044 21.3 6.3 42 219-260 42-84 (112)
315 PRK07523 gluconate 5-dehydroge 30.9 3.7E+02 0.008 23.6 8.9 72 144-231 27-98 (255)
316 COG1064 AdhP Zn-dependent alco 30.8 1.6E+02 0.0034 28.6 6.6 51 96-159 168-218 (339)
317 cd06285 PBP1_LacI_like_7 Ligan 30.8 3.7E+02 0.008 23.5 19.2 36 219-256 174-213 (265)
318 PTZ00354 alcohol dehydrogenase 30.7 1.3E+02 0.0028 27.6 6.0 49 96-156 142-190 (334)
319 TIGR01292 TRX_reduct thioredox 30.6 66 0.0014 29.1 4.0 29 98-128 3-31 (300)
320 PRK09754 phenylpropionate diox 30.6 1.9E+02 0.0042 27.8 7.5 34 96-131 145-178 (396)
321 PRK10014 DNA-binding transcrip 30.5 4.3E+02 0.0094 24.3 19.7 36 219-256 242-290 (342)
322 PRK09545 znuA high-affinity zi 30.5 3.3E+02 0.007 25.7 8.8 93 111-213 212-307 (311)
323 cd02201 FtsZ_type1 FtsZ is a G 30.4 1.1E+02 0.0024 28.8 5.5 38 220-259 84-126 (304)
324 cd08231 MDR_TM0436_like Hypoth 30.3 1.5E+02 0.0033 27.8 6.6 49 96-156 179-227 (361)
325 cd08176 LPO Lactadehyde:propan 30.3 2.5E+02 0.0053 27.2 8.1 46 205-256 74-136 (377)
326 PRK07035 short chain dehydroge 30.2 3.8E+02 0.0081 23.5 9.0 70 144-229 25-94 (252)
327 cd08170 GlyDH Glycerol dehydro 30.1 2.2E+02 0.0048 27.1 7.7 13 115-127 17-29 (351)
328 PRK09242 tropinone reductase; 30.1 3.8E+02 0.0083 23.5 9.1 32 96-129 11-42 (257)
329 PF06415 iPGM_N: BPG-independe 30.0 1.1E+02 0.0023 27.9 5.1 93 81-178 14-121 (223)
330 PRK06194 hypothetical protein; 29.9 3.9E+02 0.0085 23.9 9.1 54 97-159 9-62 (287)
331 TIGR00262 trpA tryptophan synt 29.8 4.4E+02 0.0095 24.1 14.9 49 82-131 103-151 (256)
332 PRK10653 D-ribose transporter 29.8 4.2E+02 0.0091 23.9 18.2 160 84-256 72-242 (295)
333 COG2242 CobL Precorrin-6B meth 29.7 3.9E+02 0.0086 23.6 8.8 79 219-302 32-125 (187)
334 cd08550 GlyDH-like Glycerol_de 29.7 2.7E+02 0.0059 26.5 8.2 13 114-126 16-28 (349)
335 TIGR00065 ftsZ cell division p 29.7 1.6E+02 0.0035 28.4 6.6 69 220-290 101-175 (349)
336 PRK09126 hypothetical protein; 29.7 64 0.0014 30.8 3.9 30 98-129 6-35 (392)
337 cd08190 HOT Hydroxyacid-oxoaci 29.6 3E+02 0.0065 27.1 8.7 26 204-234 68-93 (414)
338 PRK09250 fructose-bisphosphate 29.6 3.7E+02 0.0079 26.2 8.9 100 60-160 125-239 (348)
339 cd08284 FDH_like_2 Glutathione 29.6 1.8E+02 0.0039 26.9 6.9 47 96-154 169-215 (344)
340 cd08298 CAD2 Cinnamyl alcohol 29.6 1.9E+02 0.0041 26.6 7.0 46 96-154 169-214 (329)
341 PRK07791 short chain dehydroge 29.5 4.4E+02 0.0094 24.0 11.7 31 96-128 8-38 (286)
342 PRK06753 hypothetical protein; 29.3 73 0.0016 30.2 4.2 29 98-128 3-31 (373)
343 cd06313 PBP1_ABC_sugar_binding 29.3 4.1E+02 0.0089 23.6 16.8 201 85-308 46-259 (272)
344 PRK12937 short chain dehydroge 29.2 3.8E+02 0.0082 23.2 10.8 55 98-159 8-62 (245)
345 cd06302 PBP1_LsrB_Quorum_Sensi 29.2 4.4E+02 0.0095 23.9 17.0 160 84-256 46-221 (298)
346 TIGR02638 lactal_redase lactal 29.1 2.6E+02 0.0057 27.1 8.1 26 204-234 74-99 (379)
347 PRK15452 putative protease; Pr 29.0 6E+02 0.013 25.4 12.2 96 143-252 15-115 (443)
348 PRK12266 glpD glycerol-3-phosp 28.9 68 0.0015 32.5 4.1 31 95-128 7-37 (508)
349 PRK09134 short chain dehydroge 28.9 4E+02 0.0088 23.4 11.2 31 97-129 12-42 (258)
350 cd08297 CAD3 Cinnamyl alcohol 28.8 1.9E+02 0.0041 26.8 6.9 49 96-156 167-215 (341)
351 PRK08277 D-mannonate oxidoredu 28.7 4.2E+02 0.0091 23.6 9.0 31 97-128 12-42 (278)
352 cd08277 liver_alcohol_DH_like 28.7 1.4E+02 0.003 28.3 6.1 49 96-156 186-234 (365)
353 COG3688 Predicted RNA-binding 28.7 2.7E+02 0.0059 24.1 6.9 92 110-213 38-133 (173)
354 cd08287 FDH_like_ADH3 formalde 28.6 2E+02 0.0044 26.6 7.1 49 96-156 170-218 (345)
355 PRK11303 DNA-binding transcrip 28.6 4.6E+02 0.0099 23.9 19.6 77 219-311 237-317 (328)
356 PF13738 Pyr_redox_3: Pyridine 28.5 75 0.0016 27.0 3.8 33 96-130 168-200 (203)
357 PRK08849 2-octaprenyl-3-methyl 28.5 71 0.0015 30.6 4.0 29 98-128 6-34 (384)
358 cd05283 CAD1 Cinnamyl alcohol 28.5 2E+02 0.0043 26.8 7.0 48 96-156 171-218 (337)
359 cd08195 DHQS Dehydroquinate sy 28.4 4.1E+02 0.0088 25.3 9.2 32 223-256 87-120 (345)
360 PRK06247 pyruvate kinase; Prov 28.1 6.5E+02 0.014 25.6 11.5 133 110-256 258-401 (476)
361 PF01494 FAD_binding_3: FAD bi 28.0 83 0.0018 28.9 4.3 32 98-131 4-35 (356)
362 PLN02827 Alcohol dehydrogenase 27.9 1.7E+02 0.0036 28.2 6.4 49 96-156 195-243 (378)
363 PRK05434 phosphoglyceromutase; 27.8 3.7E+02 0.0081 27.5 9.1 50 82-131 97-155 (507)
364 PRK05718 keto-hydroxyglutarate 27.8 3.3E+02 0.0071 24.3 7.8 92 85-198 78-169 (212)
365 cd08179 NADPH_BDH NADPH-depend 27.8 2.2E+02 0.0047 27.5 7.2 53 172-234 42-94 (375)
366 cd08194 Fe-ADH6 Iron-containin 27.8 3.7E+02 0.0081 25.9 8.9 74 172-256 41-131 (375)
367 cd05188 MDR Medium chain reduc 27.7 1.8E+02 0.0039 25.3 6.3 48 96-156 136-183 (271)
368 PRK12778 putative bifunctional 27.7 1.8E+02 0.0038 31.1 7.1 56 96-156 571-627 (752)
369 cd06305 PBP1_methylthioribose_ 27.6 4.2E+02 0.0091 23.2 16.1 60 60-128 29-88 (273)
370 PRK09492 treR trehalose repres 27.6 4.7E+02 0.01 23.7 19.3 34 220-255 232-266 (315)
371 cd08240 6_hydroxyhexanoate_dh_ 27.5 2.3E+02 0.005 26.4 7.2 48 96-155 177-224 (350)
372 COG0078 ArgF Ornithine carbamo 27.4 2.1E+02 0.0045 27.3 6.7 60 96-159 154-214 (310)
373 PRK06371 translation initiatio 27.3 2.3E+02 0.0049 27.3 7.1 44 110-159 158-204 (329)
374 PRK08340 glucose-1-dehydrogena 27.3 4.4E+02 0.0095 23.3 9.0 29 98-128 4-32 (259)
375 COG2236 Predicted phosphoribos 27.2 3.3E+02 0.0071 24.1 7.6 96 204-304 15-112 (192)
376 PRK08274 tricarballylate dehyd 27.2 77 0.0017 31.4 4.1 30 95-127 5-34 (466)
377 PRK06019 phosphoribosylaminoim 27.2 1E+02 0.0022 29.7 4.9 31 97-129 4-34 (372)
378 PRK10669 putative cation:proto 27.1 4.5E+02 0.0098 26.8 9.8 81 144-252 433-513 (558)
379 cd06316 PBP1_ABC_sugar_binding 27.1 4.6E+02 0.01 23.5 17.0 158 85-256 47-221 (294)
380 cd06356 PBP1_Amide_Urea_BP_lik 27.0 5.1E+02 0.011 24.0 15.2 33 219-252 186-219 (334)
381 PRK07121 hypothetical protein; 27.0 78 0.0017 31.7 4.1 30 95-127 21-50 (492)
382 PRK08017 oxidoreductase; Provi 27.0 2.1E+02 0.0045 25.1 6.6 50 97-158 4-53 (256)
383 PRK07063 short chain dehydroge 27.0 4.4E+02 0.0095 23.2 9.0 31 97-128 9-39 (260)
384 TIGR00936 ahcY adenosylhomocys 26.9 1.6E+02 0.0034 29.3 6.1 29 96-126 196-224 (406)
385 TIGR00521 coaBC_dfp phosphopan 26.9 90 0.002 30.7 4.4 26 104-129 209-234 (390)
386 PRK08306 dipicolinate synthase 26.8 1.7E+02 0.0037 27.4 6.1 46 96-154 153-198 (296)
387 PF01134 GIDA: Glucose inhibit 26.8 81 0.0018 31.1 4.0 28 98-127 2-29 (392)
388 COG1335 PncA Amidases related 26.8 1.6E+02 0.0035 25.4 5.6 40 92-132 130-170 (205)
389 COG1879 RbsB ABC-type sugar tr 26.8 5E+02 0.011 23.8 16.3 160 84-255 81-254 (322)
390 PF13738 Pyr_redox_3: Pyridine 26.8 77 0.0017 26.9 3.5 26 102-129 4-29 (203)
391 TIGR02817 adh_fam_1 zinc-bindi 26.7 1.5E+02 0.0033 27.2 5.8 49 96-156 150-199 (336)
392 PF13460 NAD_binding_10: NADH( 26.7 3.7E+02 0.0079 22.2 10.6 30 101-131 4-33 (183)
393 PRK06481 fumarate reductase fl 26.6 77 0.0017 32.0 4.0 30 95-127 62-91 (506)
394 TIGR01377 soxA_mon sarcosine o 26.6 84 0.0018 29.8 4.1 28 99-128 4-31 (380)
395 PRK06128 oxidoreductase; Provi 26.6 5E+02 0.011 23.7 11.2 58 94-158 55-112 (300)
396 cd08242 MDR_like Medium chain 26.6 1.8E+02 0.0039 26.6 6.2 47 96-155 157-203 (319)
397 PRK06172 short chain dehydroge 26.5 4.4E+02 0.0095 23.0 9.3 70 144-229 24-93 (253)
398 COG1587 HemD Uroporphyrinogen- 26.4 4.8E+02 0.01 23.4 12.0 151 82-275 61-223 (248)
399 PRK07494 2-octaprenyl-6-methox 26.3 75 0.0016 30.3 3.7 30 98-129 10-39 (388)
400 PRK08277 D-mannonate oxidoredu 26.3 4.5E+02 0.0097 23.5 8.7 12 246-257 195-206 (278)
401 cd08148 RuBisCO_large Ribulose 26.1 2.5E+02 0.0054 27.5 7.2 106 20-128 96-228 (366)
402 PRK06036 translation initiatio 26.1 2.7E+02 0.0059 26.9 7.4 43 111-159 170-215 (339)
403 PRK08213 gluconate 5-dehydroge 26.0 4.5E+02 0.0098 23.1 9.1 55 96-159 14-68 (259)
404 cd07766 DHQ_Fe-ADH Dehydroquin 26.0 5.5E+02 0.012 24.0 11.4 8 248-255 105-112 (332)
405 COG2205 KdpD Osmosensitive K+ 26.0 7.1E+02 0.015 27.3 10.9 64 97-160 251-320 (890)
406 PRK08589 short chain dehydroge 25.9 4.7E+02 0.01 23.4 8.8 52 97-158 9-60 (272)
407 PRK08993 2-deoxy-D-gluconate 3 25.9 3.6E+02 0.0079 23.7 8.0 52 96-158 12-63 (253)
408 PRK08303 short chain dehydroge 25.8 5.4E+02 0.012 23.8 11.6 32 97-129 10-41 (305)
409 COG0041 PurE Phosphoribosylcar 25.8 1.5E+02 0.0032 25.5 4.9 85 170-270 17-103 (162)
410 cd05284 arabinose_DH_like D-ar 25.8 1.6E+02 0.0036 27.1 5.9 48 96-156 169-217 (340)
411 PRK15317 alkyl hydroperoxide r 25.8 82 0.0018 31.9 4.0 29 98-128 214-242 (517)
412 PF02887 PK_C: Pyruvate kinase 25.8 2.7E+02 0.0059 21.8 6.4 44 204-258 7-50 (117)
413 cd08245 CAD Cinnamyl alcohol d 25.7 2.5E+02 0.0055 25.7 7.1 48 96-156 164-211 (330)
414 PRK12779 putative bifunctional 25.7 2E+02 0.0043 31.8 7.1 33 96-130 448-480 (944)
415 PRK07806 short chain dehydroge 25.6 4.5E+02 0.0097 22.8 11.1 31 97-129 9-39 (248)
416 cd08290 ETR 2-enoyl thioester 25.6 2.2E+02 0.0048 26.2 6.7 54 96-157 148-201 (341)
417 PRK07774 short chain dehydroge 25.6 4.5E+02 0.0097 22.8 9.4 31 98-129 9-39 (250)
418 PRK12481 2-deoxy-D-gluconate 3 25.5 4.6E+02 0.0099 23.1 8.6 70 144-231 25-94 (251)
419 TIGR00438 rrmJ cell division p 25.5 1.7E+02 0.0037 24.9 5.5 33 222-257 35-67 (188)
420 TIGR01813 flavo_cyto_c flavocy 25.4 84 0.0018 30.8 3.9 28 98-127 2-30 (439)
421 PRK06015 keto-hydroxyglutarate 25.4 3.6E+02 0.0079 23.9 7.6 89 87-198 69-158 (201)
422 COG0399 WecE Predicted pyridox 25.3 3.4E+02 0.0074 26.6 8.0 72 76-159 32-103 (374)
423 cd05282 ETR_like 2-enoyl thioe 25.3 2.1E+02 0.0045 26.0 6.4 49 96-156 140-188 (323)
424 CHL00194 ycf39 Ycf39; Provisio 25.2 1.9E+02 0.0042 26.8 6.2 31 98-129 3-33 (317)
425 COG0593 DnaA ATPase involved i 25.1 1.3E+02 0.0028 29.9 5.1 86 219-308 113-211 (408)
426 PRK06475 salicylate hydroxylas 25.0 89 0.0019 30.2 4.0 30 98-129 5-34 (400)
427 cd08259 Zn_ADH5 Alcohol dehydr 25.0 2.8E+02 0.0061 25.2 7.2 47 96-154 164-210 (332)
428 PRK10727 DNA-binding transcrip 24.9 1.8E+02 0.0039 27.1 6.0 35 219-255 236-274 (343)
429 PF12000 Glyco_trans_4_3: Gkyc 24.9 1.7E+02 0.0036 25.4 5.2 33 218-255 64-96 (171)
430 TIGR03754 conj_TOL_TraD conjug 24.8 6E+02 0.013 26.9 10.1 69 61-130 170-246 (643)
431 cd05211 NAD_bind_Glu_Leu_Phe_V 24.8 2.9E+02 0.0063 24.7 7.0 48 81-130 4-56 (217)
432 PRK08010 pyridine nucleotide-d 24.8 89 0.0019 30.7 4.0 30 96-128 5-34 (441)
433 PRK07846 mycothione reductase; 24.8 1.9E+02 0.0041 28.7 6.3 34 96-131 167-200 (451)
434 cd08186 Fe-ADH8 Iron-containin 24.7 3.4E+02 0.0074 26.3 8.0 24 205-233 73-96 (383)
435 PRK13111 trpA tryptophan synth 24.7 5.5E+02 0.012 23.6 12.1 50 82-132 105-154 (258)
436 PRK12745 3-ketoacyl-(acyl-carr 24.5 4.6E+02 0.0099 22.9 8.3 54 98-158 5-58 (256)
437 PRK05772 translation initiatio 24.5 2.4E+02 0.0053 27.5 6.8 61 92-159 165-235 (363)
438 TIGR03743 SXT_TraD conjugative 24.5 6.5E+02 0.014 26.5 10.4 71 60-130 165-242 (634)
439 PRK07251 pyridine nucleotide-d 24.4 2E+02 0.0043 28.2 6.4 59 96-156 158-217 (438)
440 PRK06354 pyruvate kinase; Prov 24.4 8.3E+02 0.018 25.5 11.1 130 110-256 267-409 (590)
441 TIGR01812 sdhA_frdA_Gneg succi 24.4 89 0.0019 31.9 4.0 29 98-128 2-30 (566)
442 PRK07538 hypothetical protein; 24.3 96 0.0021 30.1 4.1 29 98-128 3-31 (413)
443 cd04509 PBP1_ABC_transporter_G 24.1 4.8E+02 0.01 22.7 18.2 157 87-261 59-233 (299)
444 PRK06617 2-octaprenyl-6-methox 24.1 90 0.002 29.8 3.8 29 98-128 4-32 (374)
445 cd05313 NAD_bind_2_Glu_DH NAD( 24.0 3E+02 0.0066 25.4 7.1 47 81-129 19-70 (254)
446 cd06326 PBP1_STKc_like Type I 24.0 5.5E+02 0.012 23.4 19.2 154 86-260 59-230 (336)
447 PRK06372 translation initiatio 24.0 5.8E+02 0.013 23.6 9.0 53 96-159 88-142 (253)
448 PF01081 Aldolase: KDPG and KH 24.0 4E+02 0.0086 23.6 7.5 91 87-200 73-164 (196)
449 PRK11101 glpA sn-glycerol-3-ph 23.8 95 0.0021 31.8 4.1 30 96-128 8-37 (546)
450 PRK09701 D-allose transporter 23.7 5.7E+02 0.012 23.4 18.8 203 84-309 72-294 (311)
451 PRK12809 putative oxidoreducta 23.7 2.2E+02 0.0048 29.7 6.8 60 96-157 311-380 (639)
452 PRK13369 glycerol-3-phosphate 23.6 95 0.0021 31.3 4.0 32 95-129 7-38 (502)
453 PRK07677 short chain dehydroge 23.6 5E+02 0.011 22.7 9.0 29 98-128 5-33 (252)
454 PLN02464 glycerol-3-phosphate 23.5 95 0.0021 32.5 4.1 31 95-128 72-102 (627)
455 PF09363 XFP_C: XFP C-terminal 23.3 1.4E+02 0.003 26.7 4.5 39 219-257 33-73 (203)
456 PRK09257 aromatic amino acid a 23.3 6E+02 0.013 24.3 9.5 17 142-158 132-148 (396)
457 PRK05868 hypothetical protein; 23.3 1.1E+02 0.0024 29.3 4.3 28 98-127 4-31 (372)
458 cd08183 Fe-ADH2 Iron-containin 23.3 4.8E+02 0.01 25.1 8.7 70 148-234 19-88 (374)
459 PRK05976 dihydrolipoamide dehy 23.3 2.2E+02 0.0047 28.3 6.5 33 96-130 181-213 (472)
460 KOG1205 Predicted dehydrogenas 23.3 6.3E+02 0.014 23.7 10.2 37 93-131 11-47 (282)
461 PRK08226 short chain dehydroge 23.3 5.1E+02 0.011 22.7 8.5 12 246-257 176-187 (263)
462 KOG1466 Translation initiation 23.3 2E+02 0.0043 27.0 5.5 21 110-130 144-164 (313)
463 TIGR03669 urea_ABC_arch urea A 23.2 6.7E+02 0.014 24.0 13.9 140 93-253 67-220 (374)
464 PRK08401 L-aspartate oxidase; 23.2 1.1E+02 0.0024 30.5 4.3 29 98-128 4-32 (466)
465 PRK10083 putative oxidoreducta 23.2 2.7E+02 0.0057 25.7 6.7 49 96-156 162-211 (339)
466 PRK09620 hypothetical protein; 23.1 1.3E+02 0.0028 27.2 4.4 25 104-128 27-51 (229)
467 PRK06139 short chain dehydroge 23.1 6.4E+02 0.014 23.7 13.0 38 87-126 24-61 (330)
468 PRK13671 hypothetical protein; 23.0 4.1E+02 0.009 25.2 7.9 53 105-157 13-68 (298)
469 PRK11891 aspartate carbamoyltr 23.0 2.9E+02 0.0063 27.6 7.1 56 97-158 243-300 (429)
470 PRK11749 dihydropyrimidine deh 23.0 2.9E+02 0.0062 27.3 7.2 56 96-156 274-330 (457)
471 PRK07236 hypothetical protein; 23.0 1.1E+02 0.0024 29.3 4.1 32 97-130 8-39 (386)
472 PRK08163 salicylate hydroxylas 22.9 1.1E+02 0.0024 29.2 4.1 30 98-129 7-36 (396)
473 PRK12834 putative FAD-binding 22.9 1E+02 0.0022 31.5 4.1 30 95-127 5-34 (549)
474 PRK06949 short chain dehydroge 22.9 5.1E+02 0.011 22.6 8.8 33 96-129 10-42 (258)
475 COG0299 PurN Folate-dependent 22.9 2E+02 0.0043 25.7 5.3 42 223-264 3-44 (200)
476 PF02826 2-Hacid_dh_C: D-isome 22.9 1.7E+02 0.0036 25.0 4.9 119 96-259 37-157 (178)
477 PF00218 IGPS: Indole-3-glycer 22.9 3.8E+02 0.0083 24.7 7.5 65 84-159 121-186 (254)
478 cd08209 RLP_DK-MTP-1-P-enolase 22.8 2.9E+02 0.0064 27.2 7.1 106 20-128 93-225 (391)
479 TIGR01988 Ubi-OHases Ubiquinon 22.8 1E+02 0.0022 29.1 3.9 29 101-131 5-33 (385)
480 COG2303 BetA Choline dehydroge 22.8 1.2E+02 0.0025 31.2 4.5 38 219-260 6-43 (542)
481 PRK10754 quinone oxidoreductas 22.7 2.1E+02 0.0046 26.2 6.0 49 96-156 142-190 (327)
482 PRK12837 3-ketosteroid-delta-1 22.7 99 0.0022 31.3 3.9 29 95-127 8-36 (513)
483 TIGR02032 GG-red-SF geranylger 22.7 1.2E+02 0.0025 27.2 4.1 29 98-129 4-32 (295)
484 PRK13394 3-hydroxybutyrate deh 22.7 5.2E+02 0.011 22.5 9.0 70 144-229 24-93 (262)
485 PRK10401 DNA-binding transcrip 22.6 2.1E+02 0.0045 26.6 5.9 36 219-256 236-275 (346)
486 PRK04176 ribulose-1,5-biphosph 22.6 2.1E+02 0.0046 26.1 5.8 32 95-129 26-57 (257)
487 TIGR01120 rpiB ribose 5-phosph 22.6 2.5E+02 0.0055 23.6 5.7 60 85-160 46-108 (143)
488 cd06354 PBP1_BmpA_PnrA_like Pe 22.6 1.5E+02 0.0032 26.6 4.7 33 221-257 184-216 (265)
489 cd08244 MDR_enoyl_red Possible 22.5 2.7E+02 0.0059 25.2 6.6 48 96-155 144-191 (324)
490 TIGR00689 rpiB_lacA_lacB sugar 22.4 2.5E+02 0.0055 23.6 5.7 61 84-160 44-107 (144)
491 PRK08013 oxidoreductase; Provi 22.4 1E+02 0.0023 29.7 3.9 31 96-129 5-35 (400)
492 COG0061 nadF NAD kinase [Coenz 22.4 1.2E+02 0.0025 28.4 4.0 35 220-256 54-88 (281)
493 PRK12745 3-ketoacyl-(acyl-carr 22.3 5.2E+02 0.011 22.5 8.9 12 246-257 181-192 (256)
494 cd06281 PBP1_LacI_like_5 Ligan 22.3 5.3E+02 0.012 22.6 19.0 34 219-254 175-212 (269)
495 PRK05396 tdh L-threonine 3-deh 22.3 2.5E+02 0.0054 26.1 6.4 49 96-156 165-213 (341)
496 cd08191 HHD 6-hydroxyhexanoate 22.2 5.1E+02 0.011 25.1 8.7 14 220-234 79-92 (386)
497 cd06273 PBP1_GntR_like_1 This 22.2 5.3E+02 0.011 22.4 19.3 73 219-307 177-253 (268)
498 COG0796 MurI Glutamate racemas 22.2 6.5E+02 0.014 23.5 8.9 47 203-256 54-100 (269)
499 PRK09423 gldA glycerol dehydro 22.2 4.4E+02 0.0096 25.3 8.2 75 145-234 23-97 (366)
500 PRK05571 ribose-5-phosphate is 22.1 2.6E+02 0.0055 23.7 5.7 60 84-160 47-110 (148)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-46 Score=340.56 Aligned_cols=245 Identities=40% Similarity=0.636 Sum_probs=217.4
Q ss_pred hcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHH
Q 021235 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 108 (315)
Q Consensus 31 ~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNh 108 (315)
.|..+| |+.+...||||+. +++|++ |++||+||||+++..+||||+||++|++.+|+++|++++||+||+||||
T Consensus 2 ~l~rf~--R~~l~~~pTPiq~--L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT~GgiQSNh 77 (323)
T COG2515 2 NLSRFP--RMELIFGPTPIQK--LPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNH 77 (323)
T ss_pred CcccCC--ccccCCCCChhhh--HHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEEecccchhH
Confidence 467889 8999999999999 899988 8999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEe
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 188 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~i 188 (315)
.+++|++|+++|++|+++++... + ++...+|+.+.+.+|++++.++.+.+. .....++.+++++++++.++|+|
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~---~-~y~~ngn~Ll~~l~G~~~~~~~~~~d~--~~~~~~~~~~e~~~~~g~kpyvI 151 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIE---A-NYLLNGNLLLSKLMGAEVRAVDAGTDI--GINASAEELAEEVRKQGGKPYVI 151 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccc---c-ccccccchhhhhhcCceEEEecCCCCh--hhchhhHHHHHHHHhcCCCCcEe
Confidence 99999999999999999998876 1 455689999999999999999976432 12345577788888889999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHH
Q 021235 189 PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQG 268 (315)
Q Consensus 189 p~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~ 268 (315)
|+|++|+.+..||..++.||.+|..+. .++|.||+++|||||.||++.++...+++++||||++.++.+++.+++.+
T Consensus 152 p~GG~~~~g~lGyv~~a~Ei~~Q~~~~---~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~ 228 (323)
T COG2515 152 PEGGSSPLGALGYVRLALEIAEQAEQL---LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLN 228 (323)
T ss_pred ccCCcCccccccHHHHHHHHHHHHhhc---cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHH
Confidence 999999999999999999999999742 57999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcC--CC-CCCCeEEecCC
Q 021235 269 LLDGLNA--GV-DSRDIVNIQNV 288 (315)
Q Consensus 269 l~~g~~~--~~-~~~dvv~v~e~ 288 (315)
+.+..+. +. ...+++.++|-
T Consensus 229 L~~~~a~~~~~~~~~~v~~~~dy 251 (323)
T COG2515 229 LAQATAELLGLGSEADVLLSDDY 251 (323)
T ss_pred HHHHHHHHcCCCCCceEEEEecc
Confidence 9887554 22 35666666664
No 2
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.5e-43 Score=337.28 Aligned_cols=259 Identities=40% Similarity=0.574 Sum_probs=208.8
Q ss_pred hcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHH
Q 021235 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 108 (315)
Q Consensus 31 ~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNh 108 (315)
.+..+| ++.+..++|||++ ++.|++ |.+||+||||+||+.+||||+|++.+++.+++++|.++||++|+++|||
T Consensus 2 ~~~~~~--~~~~~~~~TPl~~--~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~ 77 (331)
T PRK03910 2 NLARFP--RLELAGLPTPLEP--LPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLITAGAIQSNH 77 (331)
T ss_pred CcCcCC--CccccCCCCCceE--hhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCcchhHH
Confidence 356777 7888999999999 788876 8899999999999766799999999999999999999999988889999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEe
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 188 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~i 188 (315)
|+|+|++|+.+|++|++|||+..+..+.++...+|+..++.+||+|+.++..++ ..+.....++++.++++..|++
T Consensus 78 g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~----~~~~~~~~a~~l~~~~~~~~~~ 153 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTD----MDAQLEELAEELRAQGRRPYVI 153 (331)
T ss_pred HHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccch----HHHHHHHHHHHHHHcCCceEEE
Confidence 999999999999999999999875322111123678999999999999986321 1122344555666655557889
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHH--
Q 021235 189 PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT-- 266 (315)
Q Consensus 189 p~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i-- 266 (315)
|+++.|+.+.+||.+++.||++|+.. .+..||+||+|+|||||++|+++++++.+++++||||+++++..+.....
T Consensus 154 ~~~~~~~~~~~g~~~~~~Ei~~q~~~--~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~ 231 (331)
T PRK03910 154 PVGGSNALGALGYVACALEIAQQLAE--GGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAK 231 (331)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHh--cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999962 11269999999999999999999999999999999999999877654433
Q ss_pred --HHHHhhhcCC------------CCCCCeEEecCCcccchHHHHHH
Q 021235 267 --QGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 267 --~~l~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
..+.++++.. ...++++.|+|.+.+..+.++..
T Consensus 232 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~ 278 (331)
T PRK03910 232 LAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLAR 278 (331)
T ss_pred HHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3344444421 23567788888888888877764
No 3
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.8e-43 Score=333.73 Aligned_cols=246 Identities=47% Similarity=0.719 Sum_probs=201.2
Q ss_pred cCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHH
Q 021235 41 SLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 118 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~ 118 (315)
++...+|||++ ++.|+. |.+||+||||+||+.+||||+|++.+++.+++++|+++||++|+|+||||+|+|++|++
T Consensus 2 ~~~~~~TPl~~--~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~ 79 (311)
T TIGR01275 2 ELIPWPTPIQY--LPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKK 79 (311)
T ss_pred CCCCCCCccee--chhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHH
Confidence 35668999999 778876 88999999999996559999999999999999999999999988999999999999999
Q ss_pred cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhH
Q 021235 119 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 198 (315)
Q Consensus 119 lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~ 198 (315)
+|++|++|||...+. ..|..++++|||+|++++...|++. .+.++++++++.++++..|++|+++.|+.+.
T Consensus 80 ~G~~~~ivvp~~~~~-------~~~~~~~~~~Ga~v~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 150 (311)
T TIGR01275 80 LGLDAVLVLREKEEL-------NGNLLLDKLMGAETRVYSAEEYFEI--MKYAEELAEELEKEGRKPYVIPVGGSNSLGT 150 (311)
T ss_pred hCCceEEEecCCccC-------CCCHHHHHHcCCEEEEECchhhhhh--HHHHHHHHHHHHhcCCCeEEECCCCCcHHHH
Confidence 999999999986421 2467788999999999986445432 2344445555555444678999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchh----hHHHHHHHHhhhc
Q 021235 199 WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY----FYDYTQGLLDGLN 274 (315)
Q Consensus 199 ~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~----~~~~i~~l~~g~~ 274 (315)
.||.+++.||++|+.. +.++|+||+|+|||||++|+++++|+.+++++||||++.+.... ....+++++++++
T Consensus 151 ~g~~~~~~EI~~q~~~---~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (311)
T TIGR01275 151 LGYVEAVLEIATQLES---EVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLE 227 (311)
T ss_pred HHHHHHHHHHHHHHhc---CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999962 13699999999999999999999999999999999998765322 2235566777876
Q ss_pred CC---------CCCCCeEEecCCcccchHHHHHHH
Q 021235 275 AG---------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 275 ~~---------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.. ...++++.|+|.+.+.++..+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~ 262 (311)
T TIGR01275 228 VKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASR 262 (311)
T ss_pred CCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHH
Confidence 42 234667889999999888888654
No 4
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.4e-42 Score=331.38 Aligned_cols=260 Identities=28% Similarity=0.428 Sum_probs=202.6
Q ss_pred cCCCCcCcccCCCCCCCccccCCCCCCC--CC--eEEEEeCCCCCC-CCchhHHHHHHHHHHHHHHcCCCEEEecCCchh
Q 021235 32 LAPIPSHVFSLGHFPTPIHKWNLPNLPH--NT--EVWLKRDDLSGM-QLSGNKVRKLEFLMADAVAQGADCIITIGGIQS 106 (315)
Q Consensus 32 l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~--~v~vKrEdl~~~-~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~G 106 (315)
+..+| |+.+..++|||++ +++|++ |. +||+||||+|++ .+||||+|++.+++.+|+++|+++|+++||++|
T Consensus 2 ~~~~~--~~~l~~g~TPl~~--~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~g 77 (337)
T TIGR01274 2 LSRFP--RYPLTFGPSPIHP--LPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQS 77 (337)
T ss_pred CCcCC--ccccCCCCCCceE--hHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 56788 8999999999999 788876 54 999999999974 359999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcE
Q 021235 107 NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY 186 (315)
Q Consensus 107 Nhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y 186 (315)
|||+|+|++|+++|++|+||||+..+.....+....|+.+++.|||+|+.++.. |+. +....+..+.++++++++..|
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~-~~~~~~~~a~~~~~~~~~~~~ 155 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG-FDI-GHRNSWERALEEVRGAGGKPY 155 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc-ccc-cchHHHHHHHHHHHhcCCceE
Confidence 999999999999999999999986431100000136899999999999999863 431 112233444555555444558
Q ss_pred EeCCCC-CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHH
Q 021235 187 VIPVGG-SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 265 (315)
Q Consensus 187 ~ip~g~-~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~ 265 (315)
++|.+. .++.+.+||.+++.||++|+.+. +.+||+||+|+|||||++|+++++++.++++|||||++.++..+....
T Consensus 156 ~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~~--~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~ 233 (337)
T TIGR01274 156 PIPAGCSDHPLGGLGFVGFAFEVREQEGEL--GFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQ 233 (337)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHhc--CCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHH
Confidence 888874 47999999999999999998531 246999999999999999999999999999999999999998765443
Q ss_pred H----HHHHhhhcCC------------CCCCCeEEecCCcccchHHHHHH
Q 021235 266 T----QGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 266 i----~~l~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
+ ..++++++.. ...++.+.|+|.+....+..+..
T Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 283 (337)
T TIGR01274 234 ILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAK 283 (337)
T ss_pred HHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHH
Confidence 3 3344455431 12356677777777777666654
No 5
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-44 Score=337.05 Aligned_cols=247 Identities=23% Similarity=0.279 Sum_probs=201.5
Q ss_pred CCCChhhhcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-H-cCCCEEE
Q 021235 24 APPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-A-QGADCII 99 (315)
Q Consensus 24 ~~p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~-~G~~~vV 99 (315)
.+++....+.... |+.....+|||++ ++.|++ |.+||+|+||+|+ +||||+|++++.+.... + +....||
T Consensus 5 ~~~~~~~i~~A~~--ri~~~~~~TPL~~--s~~Ls~~~g~~v~lK~E~lQ~--~gSFK~RGA~n~i~~Ls~e~~~~~gVi 78 (347)
T COG1171 5 LPVSLADILAAAA--RLKGVVNPTPLQR--SPSLSERLGAEIYLKRENLQP--VGSFKIRGAYNKLSSLSEEEERAAGVI 78 (347)
T ss_pred ccccHHHHHHHHH--HHhCcccCCCccc--chhhHHhhCceEEEeeccCcc--cccchhhhHHHHHHhcChhhhhcCceE
Confidence 3444444444333 7888889999999 789988 8999999999999 79999999999988754 2 3446788
Q ss_pred ecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHH
Q 021235 100 TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLL 179 (315)
Q Consensus 100 t~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~ 179 (315)
++ |.||||+++|++|+++|++++||||..+|. .|++.+|.|||||+++++ .||++ .+.++++.
T Consensus 79 aa--SaGNHaQGvA~aa~~lGi~a~IvMP~~tp~--------~Kv~a~r~~GaeVil~g~-~~dda------~~~a~~~a 141 (347)
T COG1171 79 AA--SAGNHAQGVAYAAKRLGIKATIVMPETTPK--------IKVDATRGYGAEVILHGD-NFDDA------YAAAEELA 141 (347)
T ss_pred Ee--cCCcHHHHHHHHHHHhCCCEEEEecCCCcH--------HHHHHHHhcCCEEEEECC-CHHHH------HHHHHHHH
Confidence 76 569999999999999999999999999863 489999999999999997 47653 33455666
Q ss_pred HhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCc
Q 021235 180 KEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 180 ~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~ 259 (315)
++.+..|+.|++ +|..++|+.|++.||++|+++ .+|+||||+|+||+++|++.++|...|++||||||+++.+
T Consensus 142 ~~~G~~~i~pfD--~p~viAGQGTi~lEileq~~~-----~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~ 214 (347)
T COG1171 142 EEEGLTFVPPFD--DPDVIAGQGTIALEILEQLPD-----LPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAP 214 (347)
T ss_pred HHcCCEEeCCCC--CcceeecccHHHHHHHHhccc-----cCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCCh
Confidence 654444555554 567777888999999999973 2699999999999999999999999999999999999987
Q ss_pred hhh-----------HHHHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 260 DYF-----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 260 ~~~-----------~~~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.+. ...+..++||++.. ...||+|.|+|..+|.+|+.++.+
T Consensus 215 ~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~ 277 (347)
T COG1171 215 SMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFER 277 (347)
T ss_pred HHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhc
Confidence 653 22356688888872 378999999999999999988765
No 6
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.4e-42 Score=327.77 Aligned_cols=225 Identities=40% Similarity=0.701 Sum_probs=188.4
Q ss_pred hcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHH
Q 021235 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 108 (315)
Q Consensus 31 ~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNh 108 (315)
.+..+| |+++..++|||++ +++|++ |++||+||||+|++..||||+|++.+++.+++++|+++||++++|+|||
T Consensus 8 ~~~~~~--~~~l~~~~TPl~~--~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~ 83 (329)
T PRK14045 8 LLSKFP--RVELIPWETPIQY--LPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNH 83 (329)
T ss_pred hhhcCC--CcccCCCCCCccc--chhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHH
Confidence 467788 8999999999999 788875 8999999999998656899999999999999999999999989999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEE
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYV 187 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ 187 (315)
|+|+|++|+++|++|++|||...+. .+|..+++++||+++.++.. .++ ..+.+.++++++.++++..|+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~-------~~~~~l~~~~Ga~v~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 153 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEEL-------KGNYLLDKIMGIETRVYEAKDSFE---LMKYAEEVAEELKGEGRKPYI 153 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCC-------CcCHHHHHHCCCEEEEECCCcccc---hHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999976431 35777889999999988742 222 112234455566665556788
Q ss_pred eCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHH
Q 021235 188 IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQ 267 (315)
Q Consensus 188 ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~ 267 (315)
+|++++|+.+..||.+.+.||++|+.+. +.++|+||+|+|||||++|+++++|+.+|++|||||++.+...++.+++.
T Consensus 154 ~p~~~~n~~~~~g~~~~~~EI~~q~~~~--~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~ 231 (329)
T PRK14045 154 IPPGGASPVGTLGYVRAVGEIATQVKKL--GVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVK 231 (329)
T ss_pred ECCCCCchhHHHHHHHHHHHHHHHHHhc--CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHH
Confidence 9999999999999988878999999631 23699999999999999999999999999999999999886666767666
Q ss_pred HHHh
Q 021235 268 GLLD 271 (315)
Q Consensus 268 ~l~~ 271 (315)
.++.
T Consensus 232 ~~~~ 235 (329)
T PRK14045 232 NLVK 235 (329)
T ss_pred HHHH
Confidence 5543
No 7
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.9e-42 Score=327.66 Aligned_cols=260 Identities=30% Similarity=0.467 Sum_probs=202.7
Q ss_pred cCCCCcCcccCCCCCCCccccCCCCCCC--C--CeEEEEeCCCCCC-CCchhHHHHHHHHHHHHHHcCCCEEEecCCchh
Q 021235 32 LAPIPSHVFSLGHFPTPIHKWNLPNLPH--N--TEVWLKRDDLSGM-QLSGNKVRKLEFLMADAVAQGADCIITIGGIQS 106 (315)
Q Consensus 32 l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g--~~v~vKrEdl~~~-~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~G 106 (315)
+..+| ++++..++|||++ +++|++ | .+||+||||+||+ .+||||+|++.+++.+|+++|+++|+++||++|
T Consensus 3 ~~~~~--~~~l~~g~TPL~~--~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~G 78 (337)
T PRK12390 3 LQKFP--RYPLTFGPTPIHP--LKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQS 78 (337)
T ss_pred CCCCC--ccccCCCCCccee--HHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 56788 8899999999999 777765 6 7999999999974 359999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcE
Q 021235 107 NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY 186 (315)
Q Consensus 107 Nhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y 186 (315)
|||+|+|++|+++|++|++|++...|..+......+|+.++++|||+|++++.. |+. .....++.+.+.+++...+.|
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG-FDI-GIRKSWEDALEDVRAAGGKPY 156 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC-cch-hHHHHHHHHHHHHHhCCCceE
Confidence 999999999999999999999876543111011135788999999999999863 431 111233444444444344567
Q ss_pred EeCCCC-CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHH
Q 021235 187 VIPVGG-SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 265 (315)
Q Consensus 187 ~ip~g~-~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~ 265 (315)
.+|.+. .++.+.+||.+++.||++|+.+. +.++|+||+|+|||||++|++.++|+.+|++|||||++.++..+...+
T Consensus 157 ~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~--~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~ 234 (337)
T PRK12390 157 AIPAGASDHPLGGLGFVGFAEEVRAQEAEL--GFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQ 234 (337)
T ss_pred EeCCcCCCCCcccHHHHHHHHHHHHHHHhc--CCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHH
Confidence 788874 45899999999999999997532 236999999999999999999999999999999999999987765443
Q ss_pred H----HHHHhhhcCC------------CCCCCeEEecCCcccchHHHHHH
Q 021235 266 T----QGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 266 i----~~l~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
+ ..++++++.+ ...++++.|+|.+....+..+..
T Consensus 235 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~ 284 (337)
T PRK12390 235 VLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCAR 284 (337)
T ss_pred HHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 3 2333444431 23567888888887777776654
No 8
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.3e-41 Score=327.63 Aligned_cols=251 Identities=17% Similarity=0.126 Sum_probs=196.2
Q ss_pred CCCChhhhcCCCCc--------CcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHc
Q 021235 24 APPSWASHLAPIPS--------HVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQ 93 (315)
Q Consensus 24 ~~p~~~~~l~~~p~--------~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~ 93 (315)
.||+|+..+...|+ .++.+..++|||++ +++++. |++||+|+|++|| +||||+|++.+++.+|+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~ig~TPl~~--l~~l~~~~g~~I~~KlE~~nP--tGS~KdR~A~~~l~~a~~~ 104 (368)
T PLN02556 29 GSPSFAQRLRDLPKDLPGTKIKTDASQLIGKTPLVY--LNKVTEGCGAYIAAKQEMFQP--TSSIKDRPALAMIEDAEKK 104 (368)
T ss_pred cccccccccchhhhhCCcchhhhhHHHhcCCCccEE--ccccccccCCEEEEEecccCC--ccchHHHHHHHHHHHHHHc
Confidence 68999987766554 46677889999999 677765 7899999999999 6999999999999999998
Q ss_pred C-----CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChH
Q 021235 94 G-----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 168 (315)
Q Consensus 94 G-----~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~ 168 (315)
| +++||+ +|+||||+|+|++|+.+|++|+||||+..+ .+|++++|+|||+|+.++.. .+. .
T Consensus 105 G~i~pG~~~vV~--aSsGN~G~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~lr~~GA~Vi~~~~~-~~~---~ 170 (368)
T PLN02556 105 NLITPGKTTLIE--PTSGNMGISLAFMAAMKGYKMILTMPSYTS--------LERRVTMRAFGAELVLTDPT-KGM---G 170 (368)
T ss_pred CCcCCCCCEEEE--eCCchHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEECCC-CCc---c
Confidence 6 367886 467999999999999999999999999874 46899999999999999752 111 1
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCC
Q 021235 169 TLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK 247 (315)
Q Consensus 169 ~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~ 247 (315)
..++.+. ++.++.+..| +..++.|+.+. .||.+++.||++|+. ..+|+||+++|||||++|+++++|+.+|+
T Consensus 171 ~~~~~a~-~l~~~~~~~~-~~~q~~np~~~~~g~~ttg~EI~eq~~-----~~~D~vV~~vGtGGt~aGv~~~lk~~~p~ 243 (368)
T PLN02556 171 GTVKKAY-ELLESTPDAF-MLQQFSNPANTQVHFETTGPEIWEDTL-----GQVDIFVMGIGSGGTVSGVGKYLKSKNPN 243 (368)
T ss_pred HHHHHHH-HHHHhcCCCC-ccCCCCCHHHHHHHHHHHHHHHHHhcC-----CCCCEEEEcCCcchHHHHHHHHHHHhCCC
Confidence 2233333 3433333344 33557789887 599999999999974 36999999999999999999999999999
Q ss_pred CeEEEEeccCCchhh-HHHHHHHHhhhcCC--------CCCCCeEEecCCcccchHHHHHH
Q 021235 248 AKVHAFSVCDDPDYF-YDYTQGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 248 ~rVigV~~~g~~~~~-~~~i~~l~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
+|||||++.++.... .+.....+++++.+ ...|+++.|+|.+...++..++.
T Consensus 244 ~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~ 304 (368)
T PLN02556 244 VKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELAL 304 (368)
T ss_pred CEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHH
Confidence 999999999875431 11122233444432 24688999998888777777664
No 9
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1e-40 Score=314.67 Aligned_cols=247 Identities=35% Similarity=0.497 Sum_probs=192.5
Q ss_pred CCccccCCCCCCC----CCeEEEEeCCCCCCC-CchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCC
Q 021235 47 TPIHKWNLPNLPH----NTEVWLKRDDLSGMQ-LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNL 121 (315)
Q Consensus 47 TPL~~~~~~~L~~----g~~v~vKrEdl~~~~-~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl 121 (315)
|||++ +++|++ +.+||+||||+||+. +||||+|++.+++.+++++|.++||++||++||||+|+|++|+++|+
T Consensus 1 TPl~~--~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~ 78 (307)
T cd06449 1 TPIQY--LPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLGL 78 (307)
T ss_pred Ccccc--hhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcCC
Confidence 89999 677765 469999999999852 48899999999999999999999999988999999999999999999
Q ss_pred eEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCC-chhhHHH
Q 021235 122 DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWG 200 (315)
Q Consensus 122 ~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~-n~~~~~G 200 (315)
+|++|||...+.....+...+|+.+++.+||+|++++.. +++. .....+..++++.++.+..|++|++++ |+.+.+|
T Consensus 79 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 156 (307)
T cd06449 79 KCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAG-FDIG-IRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLG 156 (307)
T ss_pred eEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCc-chhh-HHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHH
Confidence 999999987752100001135899999999999999864 3221 122233444455554445688898876 9999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHH----HhhhcC-
Q 021235 201 YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL----LDGLNA- 275 (315)
Q Consensus 201 ~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l----~~g~~~- 275 (315)
|.+++.||++|+... +..+|+||+|+|||||++|++.++|+.++++|||||++.++..+....+.++ +.+.+.
T Consensus 157 ~~t~~~Ei~~q~~~~--~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 157 YVGFVLEIAQQEEEL--GFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHhc--CCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999631 2369999999999999999999999999999999999999877654443332 222332
Q ss_pred ---------CCCCCCeEEecCCcccchHHHHHH
Q 021235 276 ---------GVDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 276 ---------~~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
....++++.|+|.+....+..+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 267 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCAR 267 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHH
Confidence 124677888888888877777654
No 10
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.4e-40 Score=316.72 Aligned_cols=242 Identities=21% Similarity=0.171 Sum_probs=193.6
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAA 112 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~al 112 (315)
.+.+..++|||++ +++|++ |++||+|+|++|| +||||+|++.+++.+++++|. ++||++ |+||||+|+
T Consensus 6 ~~~~~~g~TPL~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~Rga~~~v~~a~~~g~~~~g~~vv~a--SsGN~g~al 79 (330)
T PRK10717 6 DVSDTIGNTPLIR--LNRASEATGCEILGKAEFLNP--GGSVKDRAALNIIWDAEKRGLLKPGGTIVEG--TAGNTGIGL 79 (330)
T ss_pred hHHHHhCCCceEE--ccccCCCCCCeEEEEeeccCC--CCCchHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHHHHHH
Confidence 3455679999999 788876 7899999999999 699999999999999999987 678864 679999999
Q ss_pred HHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccC-hHHHHHHHHHHHHHhCCCcEEeCCC
Q 021235 113 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVG 191 (315)
Q Consensus 113 A~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~-~~~~~~~~~~~l~~~~~~~y~ip~g 191 (315)
|++|+++|++|+||||+..+ ..|+.+++.+||+|+.++...|++.+ ..+...++++++.++.++.++++.+
T Consensus 80 A~~a~~~G~~~~vv~p~~~~--------~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~ 151 (330)
T PRK10717 80 ALVAAARGYKTVIVMPETQS--------QEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQ 151 (330)
T ss_pred HHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCC
Confidence 99999999999999999874 34899999999999999863244321 1122233444554444335667777
Q ss_pred CCchhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH-------
Q 021235 192 GSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY------- 263 (315)
Q Consensus 192 ~~n~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~------- 263 (315)
++|+.+. .||.+++.||++|+. .++|+||+|+||||+++|++.++|+.+|++||+||++.+++.+..
T Consensus 152 ~~~~~~~~~g~~t~a~Ei~~ql~-----~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~ 226 (330)
T PRK10717 152 FDNPANREAHYETTGPEIWEQTD-----GKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELK 226 (330)
T ss_pred CCChhhHHHHHHhHHHHHHHhcC-----CCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcC
Confidence 8888764 679999999999985 368999999999999999999999999999999999999854421
Q ss_pred HHHHHHHhhhcCC--------CCCCCeEEecCCcccchHHHHHH
Q 021235 264 DYTQGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 264 ~~i~~l~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
.....++++++.+ ...|+++.|+|.+.+..+..++.
T Consensus 227 ~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (330)
T PRK10717 227 AEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLE 270 (330)
T ss_pred CCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHH
Confidence 1223566777652 24688999999999998887764
No 11
>PLN02550 threonine dehydratase
Probab=100.00 E-value=5e-41 Score=337.45 Aligned_cols=238 Identities=21% Similarity=0.223 Sum_probs=193.7
Q ss_pred CCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHH-HHcCCCEEEecCCchhHHHHH
Q 021235 35 IPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADA-VAQGADCIITIGGIQSNHCRA 111 (315)
Q Consensus 35 ~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a-~~~G~~~vVt~g~s~GNhg~a 111 (315)
+-..++...+.+|||++ +++|++ |++||+|+||+|+ +||||+|++.+.+..+ .+++..+||++ |+||||++
T Consensus 98 il~~~v~~~i~~TPL~~--s~~LS~~~g~~IylK~E~lqp--tGSFK~RGA~n~I~~L~~e~~~~GVV~a--SaGNhAqg 171 (591)
T PLN02550 98 ILSAKVYDVAIESPLQL--AKKLSERLGVKVLLKREDLQP--VFSFKLRGAYNMMAKLPKEQLDKGVICS--SAGNHAQG 171 (591)
T ss_pred HHhhhhhccccCChhhh--hHHhhHhhCCEEEEEEcCCCC--CCcHHHHHHHHHHHHHHHhcCCCCEEEE--CCCHHHHH
Confidence 33346667889999999 788987 8999999999999 6999999999998876 34555678875 67999999
Q ss_pred HHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCC
Q 021235 112 AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVG 191 (315)
Q Consensus 112 lA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 191 (315)
+|++|+++|++|+||||..+|. .|++.+|.|||+|++++. .|+++ .+.++++.++.+..|+.|+
T Consensus 172 vA~aA~~lGika~IvmP~~tp~--------~Kv~~~r~~GAeVvl~g~-~~dea------~~~A~~la~e~g~~fi~pf- 235 (591)
T PLN02550 172 VALSAQRLGCDAVIAMPVTTPE--------IKWQSVERLGATVVLVGD-SYDEA------QAYAKQRALEEGRTFIPPF- 235 (591)
T ss_pred HHHHHHHcCCCEEEEECCCCCH--------HHHHHHHHcCCEEEEeCC-CHHHH------HHHHHHHHHhcCCEEECCC-
Confidence 9999999999999999998852 479999999999999986 46542 2233344444334455554
Q ss_pred CCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH--------
Q 021235 192 GSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-------- 263 (315)
Q Consensus 192 ~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~-------- 263 (315)
.|+..+.|+.++|.||++|++ ..+|+||+|+|+||+++|++.++|+.+|++|||||++.+++.+..
T Consensus 236 -ddp~viaGqgTig~EI~eQl~-----~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v 309 (591)
T PLN02550 236 -DHPDVIAGQGTVGMEIVRQHQ-----GPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERV 309 (591)
T ss_pred -CChHHHHHHHHHHHHHHHHcC-----CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCcc
Confidence 367778899999999999985 259999999999999999999999999999999999999876631
Q ss_pred --HHHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 264 --DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 264 --~~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+.+..+++|+++. ...||+|.|+|.++|.+|+.++.+
T Consensus 310 ~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~ 359 (591)
T PLN02550 310 MLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEE 359 (591)
T ss_pred ccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHH
Confidence 2234567777741 367999999999999999988764
No 12
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-41 Score=314.61 Aligned_cols=254 Identities=22% Similarity=0.229 Sum_probs=205.9
Q ss_pred ccCCCCCChhhhcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC-CC
Q 021235 20 KTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG-AD 96 (315)
Q Consensus 20 ~~~~~~p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G-~~ 96 (315)
.+|+++|.-.......-..++..+.-.|||.+ .-.||. |.++|+||||+|| .||||.|++.+++...-+++ +.
T Consensus 40 ~d~~~~~~~p~~~~~~~~~~i~~~~~~TPl~~--s~~lS~~~g~~vyLK~E~lQp--sgSFK~RGa~~~~~kla~~~~~~ 115 (457)
T KOG1250|consen 40 KDPFCDPENPFYDISSAHFKIYPVIVETPLLK--SVALSKKAGMPVYLKREDLQP--SGSFKIRGAGNALQKLAKQQKKA 115 (457)
T ss_pred cCcCCCCCCccchhhhhhhccccceecccchh--hhhhhhhcCCceEEEehhccc--ccceehhhHHHHHHHHHHhhhcC
Confidence 35666664333222222336677888999998 446666 8999999999999 69999999999998765555 78
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHH
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKE 176 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~ 176 (315)
+||++ |.||||+|+|++|+++|++++||||..+|. -+++.+|.+||+|++.+. .|+++ ...+.
T Consensus 116 gVias--SaGNha~a~Ayaa~~LgipaTIVmP~~tp~--------~kiq~~~nlGA~Vil~G~-~~deA------k~~a~ 178 (457)
T KOG1250|consen 116 GVIAS--SAGNHAQAAAYAARKLGIPATIVMPVATPL--------MKIQRCRNLGATVILSGE-DWDEA------KAFAK 178 (457)
T ss_pred ceEEe--cCccHHHHHHHHHHhcCCceEEEecCCChH--------HHHHHHhccCCEEEEecc-cHHHH------HHHHH
Confidence 89975 569999999999999999999999999863 379999999999999887 48763 33445
Q ss_pred HHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 177 KLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 177 ~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
+++++.+-.|+.|+ ++|+.++|+.|++.||.+|+.. .+++||||||+||+++|++.|+|..+|+++||||++.
T Consensus 179 ~lAke~gl~yI~pf--DhP~I~aGqgTig~EIl~ql~~-----~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~ 251 (457)
T KOG1250|consen 179 RLAKENGLTYIPPF--DHPDIWAGQGTIGLEILEQLKE-----PDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETE 251 (457)
T ss_pred HHHHhcCceecCCC--CCchhhcCcchHHHHHHHhhcC-----CCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeec
Confidence 56655433454444 4688888888999999999973 4669999999999999999999999999999999999
Q ss_pred CCchhh----------HHHHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHHH
Q 021235 257 DDPDYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMNI 301 (315)
Q Consensus 257 g~~~~~----------~~~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~~ 301 (315)
+...|. .+.+..+++|+++. ...|++|.|.|..+|..|+.++-|-
T Consensus 252 ~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 252 GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhh
Confidence 987763 45677799999972 4789999999999999999998763
No 13
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.4e-40 Score=331.87 Aligned_cols=242 Identities=23% Similarity=0.210 Sum_probs=194.0
Q ss_pred hcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhH
Q 021235 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSN 107 (315)
Q Consensus 31 ~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GN 107 (315)
.|..+...|+.....+|||++ +++|++ |++||+|+|++|| +||||+|++.+++..+. +.+.++||++ |+||
T Consensus 22 ~~~~~~~~~i~~~v~~TPL~~--~~~Ls~~~g~~IylK~E~lqp--tGSfK~RGA~n~i~~l~~~~~~~GVV~a--SaGN 95 (521)
T PRK12483 22 YLRKILAARVYDVARETPLQR--APNLSARLGNQVLLKREDLQP--VFSFKIRGAYNKMARLPAEQLARGVITA--SAGN 95 (521)
T ss_pred HHHHHHHHHHhhhcCCCCeeE--chhhhHhhCCEEEEEEcCCCC--CCchHHHHHHHHHHHhHHHHhcCcEEEE--CCCH
Confidence 344455557778889999999 788887 8999999999999 69999999998887654 3344568876 5599
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEE
Q 021235 108 HCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYV 187 (315)
Q Consensus 108 hg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ 187 (315)
||+++|++|+++|++|+||||..+|. .|+..+|.|||+|++++. .|+++ .+ .++++.++.+..|+
T Consensus 96 ha~gvA~aA~~lGi~~~IvmP~~tp~--------~Kv~~~r~~GAeVil~g~-~~d~a-----~~-~A~~la~e~g~~~v 160 (521)
T PRK12483 96 HAQGVALAAARLGVKAVIVMPRTTPQ--------LKVDGVRAHGGEVVLHGE-SFPDA-----LA-HALKLAEEEGLTFV 160 (521)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCH--------HHHHHHHHCCCEEEEECC-CHHHH-----HH-HHHHHHHhcCCeee
Confidence 99999999999999999999998852 479999999999999986 46542 23 23344444333444
Q ss_pred eCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH----
Q 021235 188 IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY---- 263 (315)
Q Consensus 188 ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~---- 263 (315)
.|+ .|+..+.|+.+++.||++|++ ..+|+||+|+|+||+++|++.++|..+|++|||||++.+++.+..
T Consensus 161 ~pf--dd~~viaGqgTig~EI~eQ~~-----~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~ 233 (521)
T PRK12483 161 PPF--DDPDVIAGQGTVAMEILRQHP-----GPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAA 233 (521)
T ss_pred CCC--CChHHHHHHHHHHHHHHHHhC-----CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhc
Confidence 443 468888899999999999985 259999999999999999999999999999999999999876532
Q ss_pred ------HHHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 264 ------DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 264 ------~~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+.+..+++|+++. ...|+++.|+|.++|.+++.++.+
T Consensus 234 g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~ 287 (521)
T PRK12483 234 GERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDD 287 (521)
T ss_pred CCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 2334566777642 257999999999999999988754
No 14
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.1e-40 Score=322.96 Aligned_cols=233 Identities=19% Similarity=0.255 Sum_probs=190.3
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHc-CCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQ-GADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~-G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |++||+|+|++|| +||||+|++.+.+..+.+. +.++||++ |+||||+++|++
T Consensus 13 ~i~~~i~~TPl~~--~~~Ls~~~g~~iylK~E~lqp--tGSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNhg~avA~a 86 (403)
T PRK08526 13 RISGFVNKTPFAY--APFLSKISGAEVYLKKENLQI--TGAYKIRGAYNKIANLSEEQKQHGVIAA--SAGNHAQGVAIS 86 (403)
T ss_pred HHhCcCCCCCccc--hHHHHHHhCCeEEEEecCCCC--CCCCHHHHHHHHHHhccHhhcCCEEEEE--CccHHHHHHHHH
Confidence 6667789999999 788877 8999999999999 6999999999998877643 45778874 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|+||||+.+|. .|+..+|.|||+|++++. .|++ .++. +.++.++.+..|+.|+ .|+
T Consensus 87 a~~~Gi~~~IvmP~~~p~--------~k~~~~r~~GA~Vv~~g~-~~~~-----a~~~-a~~~a~~~g~~~v~p~--~~~ 149 (403)
T PRK08526 87 AKKFGIKAVIVMPEATPL--------LKVSGTKALGAEVILKGD-NYDE-----AYAF-ALEYAKENNLTFIHPF--EDE 149 (403)
T ss_pred HHHcCCCEEEEEcCCCCH--------HHHHHHHhCCCEEEEECC-CHHH-----HHHH-HHHHHHhcCCEeeCCC--CCH
Confidence 999999999999998752 478999999999999986 4654 2233 3344444334444443 467
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
....||.+++.||++|++ .+|+||+|+|+||+++|++.++|..+|++|||||++++++.+... .
T Consensus 150 ~~i~G~gtia~EI~eq~~------~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~ 223 (403)
T PRK08526 150 EVMAGQGTIALEMLDEIS------DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKS 223 (403)
T ss_pred HHHhhhHHHHHHHHHhcC------CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCC
Confidence 778899999999999985 589999999999999999999999999999999999998876322 2
Q ss_pred HHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+..+++|++.. ..+||+|.|+|.+++.+++.++.+
T Consensus 224 ~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~ 269 (403)
T PRK08526 224 VRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEK 269 (403)
T ss_pred CCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 44567777641 357999999999999999888753
No 15
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=8.2e-40 Score=306.17 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=189.8
Q ss_pred CCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHHHHHHHH
Q 021235 45 FPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAAKY 118 (315)
Q Consensus 45 ~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~alA~aa~~ 118 (315)
++|||++ ++.|++ |++||+|+|++|| +||||+|++.+++.+++++|. ++||+ +|+||||+|+|++|++
T Consensus 1 g~TPl~~--~~~l~~~~g~~i~~K~E~~~p--tgS~K~R~a~~~l~~a~~~g~~~~~~~vv~--~SsGN~g~alA~~a~~ 74 (291)
T cd01561 1 GNTPLVR--LNRLSPGTGAEIYAKLEFFNP--GGSVKDRIALYMIEDAEKRGLLKPGTTIIE--PTSGNTGIGLAMVAAA 74 (291)
T ss_pred CCCCEEE--ccccCCCCCCeEEEEecccCC--CCcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHHHHHHHH
Confidence 5799999 788876 7899999999999 599999999999999999987 66776 4779999999999999
Q ss_pred cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhH
Q 021235 119 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 198 (315)
Q Consensus 119 lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~ 198 (315)
+|++|++|||...+ ..|+++++.+||+|+.++.. +.. ...+. .+.++++.++.+. ++++.++.||.+.
T Consensus 75 ~G~~~~i~vp~~~~--------~~k~~~~~~~Ga~v~~~~~~-~~~-~~~~~-~~~a~~~~~~~~~-~~~~~~~~~p~~~ 142 (291)
T cd01561 75 KGYRFIIVMPETMS--------EEKRKLLRALGAEVILTPEA-EAD-GMKGA-IAKARELAAETPN-AFWLNQFENPANP 142 (291)
T ss_pred cCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-CcC-CHHHH-HHHHHHHHhhCCC-cEEecCCCCchHH
Confidence 99999999999864 35899999999999999864 410 11122 2334556554423 4565667899999
Q ss_pred HHHH-HHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchh-hHHHHHHHHhhhcCC
Q 021235 199 WGYI-EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY-FYDYTQGLLDGLNAG 276 (315)
Q Consensus 199 ~G~~-t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~-~~~~i~~l~~g~~~~ 276 (315)
.||. +++.||.+|+. ..||+||+|+|+|||++|++.++++.+++++||||++.+++.+ ........+++++.+
T Consensus 143 ~g~~~t~~~Ei~~ql~-----~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~ 217 (291)
T cd01561 143 EAHYETTAPEIWEQLD-----GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAG 217 (291)
T ss_pred HHHHHHHHHHHHHHcC-----CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCC
Confidence 9987 99999999996 2699999999999999999999999999999999999998766 222234456666653
Q ss_pred --------CCCCCeEEecCCcccchHHHHHHH
Q 021235 277 --------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 277 --------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...++++.|+|.+.+..+..+..+
T Consensus 218 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 249 (291)
T cd01561 218 FIPENLDRSLIDEVVRVSDEEAFAMARRLARE 249 (291)
T ss_pred CCCCccCchhCceeEEECHHHHHHHHHHHHHH
Confidence 246899999999999998887764
No 16
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2e-40 Score=330.42 Aligned_cols=235 Identities=21% Similarity=0.217 Sum_probs=192.2
Q ss_pred CcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHH-HHcCCCEEEecCCchhHHHHHHHH
Q 021235 38 HVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADA-VAQGADCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 38 ~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a-~~~G~~~vVt~g~s~GNhg~alA~ 114 (315)
.|+.....+|||++ +++|++ |.+||+||||+|| +||||+|++.+++..+ .+++.++||++ |+||||+++|+
T Consensus 9 ~~v~~~i~~TPL~~--~~~Ls~~~g~~i~lK~E~lqp--tgSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNha~~vA~ 82 (499)
T TIGR01124 9 ARVYEAAQETPLQK--AAKLSERLGNRILIKREDLQP--VFSFKLRGAYNKMAQLSPEQKARGVIAA--SAGNHAQGVAF 82 (499)
T ss_pred hHhhCccCCCCeee--hHHHHHHhCCEEEEEecCCCC--CCCCHHHHHHHHHHHhhHHhcCCEEEEE--CCCHHHHHHHH
Confidence 36777789999999 788887 8899999999999 6999999999998875 44556789976 56999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
+|+++|++|+||||..+| ..|+..++.+||+|++++. .|+++ ...+++++++.+..|+.|+ .|
T Consensus 83 aa~~~Gi~~~IvmP~~tp--------~~Kv~~~r~~GA~Vvl~g~-~~d~a------~~~a~~la~~~g~~~i~p~--~~ 145 (499)
T TIGR01124 83 SAARLGLKALIVMPETTP--------DIKVDAVRGFGGEVVLHGA-NFDDA------KAKAIELSQEKGLTFIHPF--DD 145 (499)
T ss_pred HHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEeCc-CHHHH------HHHHHHHHHhcCCEeeCCC--CC
Confidence 999999999999999875 3479999999999999976 46542 2334556655444444444 46
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH----------H
Q 021235 195 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------D 264 (315)
Q Consensus 195 ~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~----------~ 264 (315)
+..+.|+.++|.||++|++ .++|+||+|+|||||++|++.++|..+|++|||||++.+++.+.. .
T Consensus 146 ~~~i~G~gtig~EI~~q~~-----~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~ 220 (499)
T TIGR01124 146 PLVIAGQGTLALEILRQVA-----NPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLD 220 (499)
T ss_pred hHHHHhhHHHHHHHHHhCC-----CCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCC
Confidence 8888899999999999985 369999999999999999999999999999999999999876532 1
Q ss_pred HHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 265 YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 265 ~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.+..+++|+++. ...|+++.|+|.++|.+++.++.+
T Consensus 221 ~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~ 267 (499)
T TIGR01124 221 QVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFED 267 (499)
T ss_pred CCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 233456776641 357999999999999999888753
No 17
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-40 Score=312.92 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=185.4
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCE-EEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADC-IITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~-vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |.+||+|+|++|| +||||+|++.+++.++.+.|.+. ||++ |+||||+|+|++
T Consensus 12 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~i~~a~~~~~~~gvv~a--SsGN~g~alA~~ 85 (322)
T PRK07476 12 RIAGRVRRTPLVA--SASLSARAGVPVWLKLETLQP--TGSFKLRGATNALLSLSAQERARGVVTA--STGNHGRALAYA 85 (322)
T ss_pred HHhCCCCCCCcee--chhhHHhhCCeEEEEEccCCC--CCCchHHHHHHHHHhhhhhhhCCeEEEE--CCChHHHHHHHH
Confidence 5666779999999 788876 8899999999999 79999999999999999888754 8875 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|++|||+..+ ..|+..++.|||+|+.++. .|++ ..+. ++++.++.+. +++++ +.|+
T Consensus 86 a~~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----~~~~-a~~~~~~~g~-~~~~~-~~n~ 148 (322)
T PRK07476 86 ARALGIRATICMSRLVP--------ANKVDAIRALGAEVRIVGR-SQDD-----AQAE-VERLVREEGL-TMVPP-FDDP 148 (322)
T ss_pred HHHhCCCEEEEeCCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----HHHH-HHHHHHhcCC-EEeCC-CCCc
Confidence 99999999999999875 3489999999999999986 3543 2233 3344443333 44432 3477
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
....||.+++.||++|++ ++|+||+|+|||||++|++.++|+.+|++|||||++.+.+..... .
T Consensus 149 ~~~~g~~t~~~Ei~~Q~~------~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~ 222 (322)
T PRK07476 149 RIIAGQGTIGLEILEALP------DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEE 222 (322)
T ss_pred ceeechhHHHHHHHHhCc------CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCC
Confidence 788899999999999985 489999999999999999999999999999999999976543211 1
Q ss_pred HHHHHhhh----cC---------CCCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGL----NA---------GVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~----~~---------~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+..+.+++ +. ....|+++.|+|.+.+..+..++.+
T Consensus 223 ~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 270 (322)
T PRK07476 223 VPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYRE 270 (322)
T ss_pred CCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHh
Confidence 22233333 21 1357899999999999998888753
No 18
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=301.49 Aligned_cols=234 Identities=18% Similarity=0.114 Sum_probs=193.0
Q ss_pred cCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHHHH
Q 021235 41 SLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~alA~ 114 (315)
...+++|||++ +.+++. +++||+|+|.+|| +||.|||.+.+|+.+|+++|. ++|| ++++||+|++||+
T Consensus 6 ~~~iG~TPlvr--L~~~~~~~~~~i~~KlE~~NP--~gSvKDR~A~~mI~~Ae~~G~l~pG~tIV--E~TSGNTGI~LA~ 79 (300)
T COG0031 6 LDLIGNTPLVR--LNRLSPGTGVEIYAKLESFNP--GGSVKDRIALYMIEDAEKRGLLKPGGTIV--EATSGNTGIALAM 79 (300)
T ss_pred HHHhCCCCcEe--ecccCCCCCceEEEEhhhcCC--CCchhHHHHHHHHHHHHHcCCCCCCCEEE--EcCCChHHHHHHH
Confidence 34559999999 888877 5899999999999 689999999999999999984 5777 5688999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC-CcccccChHHHHHHHHHHHHHhCCCcEEeCCCCC
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 193 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~ 193 (315)
+|+.+|+|+++|||+..+ ..+.+++++|||+|++++. ..+ .....++ ++++.++.++.++++.|..
T Consensus 80 vaa~~Gy~~iivmP~~~S--------~er~~~l~a~GAevi~t~~~~g~----~~~a~~~-a~el~~~~p~~~~~~~Qf~ 146 (300)
T COG0031 80 VAAAKGYRLIIVMPETMS--------QERRKLLRALGAEVILTPGAPGN----MKGAIER-AKELAAEIPGYAVWLNQFE 146 (300)
T ss_pred HHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEcCCCCCc----hHHHHHH-HHHHHHhCCCceEchhhcC
Confidence 999999999999999875 3579999999999999987 221 2233343 3456555555577887889
Q ss_pred chhhHHHHH-HHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHHHhh
Q 021235 194 NSIGTWGYI-EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDG 272 (315)
Q Consensus 194 n~~~~~G~~-t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g 272 (315)
||.+.+.|. +++.||++|+. +.+|++|+++|||||++|+++++|+.+|++||++||+.+++.+........++|
T Consensus 147 NpaN~~aH~~tT~~EI~~~~~-----g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~G 221 (300)
T COG0031 147 NPANPEAHYETTGPEIWQQTD-----GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEG 221 (300)
T ss_pred CCccHHHHHhhhHHHHHHHhC-----CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCC
Confidence 998887754 89999999996 459999999999999999999999999999999999999987743224556778
Q ss_pred hcCC--------CCCCCeEEecCCcccchHHHHH
Q 021235 273 LNAG--------VDSRDIVNIQNVSVYMTFKNIL 298 (315)
Q Consensus 273 ~~~~--------~~~~dvv~v~e~~~~~~~~~~~ 298 (315)
+|.+ ..+|+++.|+|..-..+.-++.
T Consensus 222 IG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La 255 (300)
T COG0031 222 IGAGFVPENLDLDLIDEVIRVSDEEAIATARRLA 255 (300)
T ss_pred CCCCcCCcccccccCceEEEECHHHHHHHHHHHH
Confidence 8763 2479999999987777666655
No 19
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.7e-39 Score=303.74 Aligned_cols=234 Identities=18% Similarity=0.147 Sum_probs=187.4
Q ss_pred CCCCCCccccCCCCCCC-CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHHHHHHH
Q 021235 43 GHFPTPIHKWNLPNLPH-NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAAK 117 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~-g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~alA~aa~ 117 (315)
.+++|||++ ++++.. |.+||+|+|++|| +||||+|++.+++.+++++|. ++||+ +|+||||+|+|++|+
T Consensus 4 ~~g~TPl~~--~~~~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a~ 77 (298)
T TIGR01139 4 LIGNTPLVR--LNRIEGCNANVFVKLEGRNP--SGSVKDRIALNMIWDAEKRGLLKPGKTIVE--PTSGNTGIALAMVAA 77 (298)
T ss_pred ccCCCceEE--ccccCCCCceEEEEEcccCC--CCcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChhHHHHHHHHH
Confidence 468999999 566434 7899999999999 699999999999999999987 66775 477999999999999
Q ss_pred HcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhh
Q 021235 118 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIG 197 (315)
Q Consensus 118 ~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~ 197 (315)
++|++|+||||+..+ ..|+++++.+||+|+.++.. |+. .+.++ .++++.++.+..|+++.+++|+.+
T Consensus 78 ~~Gl~~~i~vp~~~~--------~~k~~~~~~~GA~v~~~~~~-~~~---~~~~~-~a~~~~~~~~~~~~~~~~~~n~~~ 144 (298)
T TIGR01139 78 ARGYKLILTMPETMS--------IERRKLLKAYGAELVLTPGA-EGM---KGAIA-KAEEIAASTPNSYFMLQQFENPAN 144 (298)
T ss_pred HcCCeEEEEeCCccC--------HHHHHHHHHcCCEEEEECCC-CCH---HHHHH-HHHHHHHhCCCcEEcccccCCccc
Confidence 999999999999874 24799999999999999863 421 12223 345566555445767777788875
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH-HHHHHHHhhhcC
Q 021235 198 -TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-DYTQGLLDGLNA 275 (315)
Q Consensus 198 -~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~-~~i~~l~~g~~~ 275 (315)
..||.+++.||++|++ ..||+||+|+|+|||++|++.++++.++++||||||+.+++.+.. +.....+++++.
T Consensus 145 ~~~g~~t~~~Ei~~q~~-----~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~ 219 (298)
T TIGR01139 145 PEIHRKTTGPEIWRDTD-----GKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGA 219 (298)
T ss_pred HHHHHHHHHHHHHHHhC-----CCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCC
Confidence 6789999999999985 259999999999999999999999999999999999998754321 111223445553
Q ss_pred C--------CCCCCeEEecCCcccchHHHHHHH
Q 021235 276 G--------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 276 ~--------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+ ...|+++.|+|.+....+..+..+
T Consensus 220 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 252 (298)
T TIGR01139 220 GFIPKNLNRSVIDEVITVSDEEAIETARRLAAE 252 (298)
T ss_pred CCCCCccChhhCCEEEEECHHHHHHHHHHHHHh
Confidence 1 136889999999999888888764
No 20
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.3e-39 Score=305.73 Aligned_cols=235 Identities=18% Similarity=0.142 Sum_probs=183.3
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAA 112 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~al 112 (315)
++...+++|||++ +++|+. |.+||+|+|++|| +||||+|++.+++.+++++|. ++||+. |+||||+|+
T Consensus 5 ~i~~~~g~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~a--SsGN~g~al 78 (296)
T PRK11761 5 TLEDTIGNTPLVK--LQRLPPDRGNTILAKLEGNNP--AGSVKDRPALSMIVQAEKRGEIKPGDTLIEA--TSGNTGIAL 78 (296)
T ss_pred cHHHhcCCCceEe--ccccccCCCCEEEEEEcccCC--CCCchhHHHHHHHHHHHHcCCCCCCCEEEEe--CCChHHHHH
Confidence 4556679999999 677765 7899999999999 799999999999999999986 678864 679999999
Q ss_pred HHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCC
Q 021235 113 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVG 191 (315)
Q Consensus 113 A~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 191 (315)
|++|+.+|++|+||||+..+ ..|+..++.|||+|+.++.. .+++ +.+.++++.++.. .++++ +
T Consensus 79 A~~a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~~------~~~~a~~l~~~~~-~~~~~-~ 142 (296)
T PRK11761 79 AMIAAIKGYRMKLIMPENMS--------QERRAAMRAYGAELILVPKEQGMEG------ARDLALQMQAEGE-GKVLD-Q 142 (296)
T ss_pred HHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChHH------HHHHHHHHHhccC-CEecC-C
Confidence 99999999999999999875 35899999999999999862 2321 2344556665432 34443 3
Q ss_pred CCchhhHH-HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH-HHH-HH
Q 021235 192 GSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-DYT-QG 268 (315)
Q Consensus 192 ~~n~~~~~-G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~-~~i-~~ 268 (315)
+.|+.+.. ||.+++.||++|++ .++|+||+|+|||||++|+++++|+.+|++||+|||+.++..... ... ..
T Consensus 143 ~~n~~~~~~~~~t~~~Ei~eq~~-----~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~ 217 (296)
T PRK11761 143 FANPDNPLAHYETTGPEIWRQTE-----GRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEE 217 (296)
T ss_pred CCChhhHHHHhhchHHHHHHhcC-----CCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCC
Confidence 45555543 57899999999985 358999999999999999999999999999999999987643210 000 00
Q ss_pred HHhhhcCCCCCCCeEEecCCcccchHHHHHHH
Q 021235 269 LLDGLNAGVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 269 l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
....+......|+++.|+|.+.+.++..++.+
T Consensus 218 ~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~ 249 (296)
T PRK11761 218 YLPKIFDASRVDRVLDVSQQEAENTMRRLARE 249 (296)
T ss_pred cCCcccChhhCCEEEEECHHHHHHHHHHHHHH
Confidence 11111112346899999999999999888864
No 21
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.6e-39 Score=307.78 Aligned_cols=231 Identities=22% Similarity=0.214 Sum_probs=186.5
Q ss_pred CCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC---CCEEEecCCchhHHHHHHHHHHHHcC
Q 021235 46 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG---ADCIITIGGIQSNHCRAAAVAAKYLN 120 (315)
Q Consensus 46 ~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G---~~~vVt~g~s~GNhg~alA~aa~~lG 120 (315)
+|||++ +++|++ |++||+|+|++|| +||||+|++.+++.+++++| .++||++ |+||||+|+|++|+.+|
T Consensus 1 ~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~~~vv~a--SsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIE--STALSKTAGCNVFLKLENLQP--SGSFKIRGIGHLCQKSAKQGLNECVHVVCS--SGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccc--cchhhHhhCCeEEEEeccCCC--cCChHHHHHHHHHHHHHHhhcccCCeEEEe--CCcHHHHHHHHHHHHcC
Confidence 599999 788876 8899999999999 69999999999999999988 7889976 45999999999999999
Q ss_pred CeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHH
Q 021235 121 LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 200 (315)
Q Consensus 121 l~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G 200 (315)
++|++|||...+ ..|++.++.|||+|+.++...++. ..+.+++++++.+..|++. ++.|+.+.+|
T Consensus 75 ~~~~iv~p~~~~--------~~k~~~l~~~GA~v~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~-~~~n~~~~~g 139 (316)
T cd06448 75 VPCTIVVPESTK--------PRVVEKLRDEGATVVVHGKVWWEA------DNYLREELAENDPGPVYVH-PFDDPLIWEG 139 (316)
T ss_pred CCEEEEECCCCC--------HHHHHHHHHcCCEEEEECCchHHH------HHHHHHHHHhccCCcEEeC-CCCCchhhcc
Confidence 999999999874 347999999999999998632322 1334555665432445554 3468999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCC-CCCeEEEEeccCCchhhHH----------HHHHH
Q 021235 201 YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT-LKAKVHAFSVCDDPDYFYD----------YTQGL 269 (315)
Q Consensus 201 ~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~-~~~rVigV~~~g~~~~~~~----------~i~~l 269 (315)
|.+++.||++|+... ..||+||+|+|||||++|++.++++.+ ++++|||||+.+++.+... ....+
T Consensus 140 ~~t~~~Ei~~q~~~~---~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~ 216 (316)
T cd06448 140 HSSMVDEIAQQLQSQ---EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSV 216 (316)
T ss_pred ccHHHHHHHHHcccc---CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCch
Confidence 999999999999620 159999999999999999999999996 9999999999998654321 12345
Q ss_pred HhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 270 LDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 270 ~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
++|++.. ...++++.|+|.+.+..+..++..
T Consensus 217 a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~ 258 (316)
T cd06448 217 ATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADD 258 (316)
T ss_pred hhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHH
Confidence 6666652 135789999999999988887753
No 22
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=3.4e-39 Score=303.26 Aligned_cols=232 Identities=21% Similarity=0.185 Sum_probs=185.4
Q ss_pred CCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHHHHHH
Q 021235 43 GHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~alA~aa 116 (315)
.+++|||++ ++.|++ |.+||+|+|++|| +||||+|++.+++.+++++|. ++|++ +|+||||+++|++|
T Consensus 4 ~vg~TPL~~--~~~l~~~~g~~i~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a 77 (299)
T TIGR01136 4 LIGNTPLVR--LNRLAPGCDARVLAKLEGRNP--SGSVKDRIALSMIEDAEKRGLLKPGDTIIE--ATSGNTGIALAMVA 77 (299)
T ss_pred ccCCCceEE--ccccCCCCCceEEEEEcccCC--CCCccHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHHHHHH
Confidence 358999999 788876 7899999999999 699999999999999999887 66875 47799999999999
Q ss_pred HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCc-ccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 117 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~-~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
+++|++|+||||+..+ ..|+.+++.+||+|+.++... ++ +.. +.++++.++. ..|+++.++.|+
T Consensus 78 ~~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~-----~~~-~~a~~~~~~~-~~~~~~~~~~~~ 142 (299)
T TIGR01136 78 AAKGYKLILTMPETMS--------LERRKLLRAYGAELILTPAEEGMK-----GAI-DKAEELAAET-NKYVMLDQFENP 142 (299)
T ss_pred HHcCCcEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH-----HHH-HHHHHHHhhC-CCeEecCCCCCc
Confidence 9999999999999874 358999999999999998631 22 222 3345555543 356677777777
Q ss_pred hh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHH-HHHHHhhh
Q 021235 196 IG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY-TQGLLDGL 273 (315)
Q Consensus 196 ~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~-i~~l~~g~ 273 (315)
.+ ..||.+++.||++|++ .++|+||+|+|+||+++|++.++++.++.+||+||++.+++.+...+ ....+.++
T Consensus 143 ~~~~~g~~t~~~Ei~~ql~-----~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i 217 (299)
T TIGR01136 143 ANPEAHYKTTGPEIWRDTD-----GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGI 217 (299)
T ss_pred hhHHHHHHHHHHHHHHhcC-----CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCC
Confidence 65 6789999999999985 25999999999999999999999999999999999999986543210 01112233
Q ss_pred cCC--------CCCCCeEEecCCcccchHHHHHHH
Q 021235 274 NAG--------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 274 ~~~--------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+.+ ...|+++.|+|.+....+..+..+
T Consensus 218 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 252 (299)
T TIGR01136 218 GAGFIPKILDLSLIDEVITVSDEDAIETARRLARE 252 (299)
T ss_pred CCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHH
Confidence 321 236789999999999998888764
No 23
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-39 Score=318.09 Aligned_cols=233 Identities=18% Similarity=0.218 Sum_probs=188.7
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC-CCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG-ADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G-~~~vVt~g~s~GNhg~alA~a 115 (315)
|+...+++|||++ ++.|++ |.+||+|+|++|| +||||+|++.+++..+.+.+ .++||++ |+||||+|+|++
T Consensus 18 ~~~~~i~~TPl~~--~~~ls~~~g~~v~~K~E~~np--tGSfK~Rga~~~i~~~~~~~~~~gvv~a--SsGN~g~a~A~a 91 (406)
T PRK06382 18 YLEGYLNRTPLIH--STTFGDEYGGDIYFKLENFQK--TGSFKSRGAVFKFSKLSEDELRNGVITA--SAGNHAQGVAYA 91 (406)
T ss_pred HHhCcCCCCCeeE--hhhhHHHhCCEEEEEecCCCC--CCCCHHHHHHHHHHhcchhccCCeEEEE--CCCHHHHHHHHH
Confidence 6777889999999 788876 8899999999999 79999999999988766544 3568875 559999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|+||||+..+ ..|+..++.|||+|++++. .|++. .+.++++.++.+ .|++++ +.|+
T Consensus 92 a~~~G~~~~ivmp~~~~--------~~k~~~~~~~GA~Vv~~~~-~~~~a------~~~a~~la~~~~-~~~v~~-~~~~ 154 (406)
T PRK06382 92 ASINGIDAKIVMPEYTI--------PQKVNAVEAYGAHVILTGR-DYDEA------HRYADKIAMDEN-RTFIEA-FNDR 154 (406)
T ss_pred HHHcCCCEEEEEcCCCH--------HHHHHHHHHcCCEEEEECC-CHHHH------HHHHHHHHHhcC-CEecCc-cCCh
Confidence 99999999999999875 2478899999999999986 46532 234555655443 444443 3477
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
....||.+++.||++|++ .+|+||+|+||||+++|++.++|+.+|++||+||++.+++.+... .
T Consensus 155 ~~i~g~~t~~~Ei~eq~~------~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~ 228 (406)
T PRK06382 155 WVISGQGTIGLEIMEDLP------DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTS 228 (406)
T ss_pred HHHHHHHHHHHHHHHhcC------CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCC
Confidence 888899999999999985 599999999999999999999999999999999999998764211 1
Q ss_pred HHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...+++|++.. ...|+++.|+|.+++..+..++.+
T Consensus 229 ~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~ 274 (406)
T PRK06382 229 GVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFER 274 (406)
T ss_pred CCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHH
Confidence 13456666652 257999999999999999887653
No 24
>PLN00011 cysteine synthase
Probab=100.00 E-value=5e-39 Score=305.29 Aligned_cols=233 Identities=18% Similarity=0.159 Sum_probs=185.2
Q ss_pred CCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC-----CCEEEecCCchhHHHHHHHH
Q 021235 42 LGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG-----ADCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 42 ~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G-----~~~vVt~g~s~GNhg~alA~ 114 (315)
...++|||++ +++++. |.+||+|+|++|| +||||+|++.+++.+|+++| .++||+ +|+||||+|+|+
T Consensus 13 ~~~g~TPl~~--l~~l~~~~g~~i~~K~E~~nP--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~--aSsGN~g~alA~ 86 (323)
T PLN00011 13 ELIGNTPMVY--LNNIVDGCVARIAAKLEMMEP--CSSVKDRIAYSMIKDAEDKGLITPGKSTLIE--ATAGNTGIGLAC 86 (323)
T ss_pred HHhCCCceEE--ccccCCCCCceEEEEecccCC--ccccchHHHHHHHHHHHHcCCCCCCCcEEEE--eCCChHHHHHHH
Confidence 4569999999 788875 5799999999999 79999999999999999998 578886 477999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
+|+.+|++|++|||+..+ ..|+++++.|||+|+.++.. ++. ...++. ++++.++.+. ++++.++.|
T Consensus 87 ~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~~-~~~---~~~~~~-a~~l~~~~~~-~~~~~~~~n 152 (323)
T PLN00011 87 IGAARGYKVILVMPSTMS--------LERRIILRALGAEVHLTDQS-IGL---KGMLEK-AEEILSKTPG-GYIPQQFEN 152 (323)
T ss_pred HHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCC-cCh---HHHHHH-HHHHHHhCCC-eEEeccccC
Confidence 999999999999999874 35899999999999999863 321 122233 4455554333 556666555
Q ss_pred hhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhh-HHHHHHHHhh
Q 021235 195 SIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF-YDYTQGLLDG 272 (315)
Q Consensus 195 ~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~-~~~i~~l~~g 272 (315)
+.+. .||.+++.||++|+. .++|+||+|+|||||++|++.++|+.+|++|||||++.++..+. .+....++++
T Consensus 153 ~~n~~~~~~t~~~EI~~q~~-----~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~g 227 (323)
T PLN00011 153 PANPEIHYRTTGPEIWRDSA-----GKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQG 227 (323)
T ss_pred CccHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCC
Confidence 4433 378999999999984 36999999999999999999999999999999999999875432 2223345556
Q ss_pred hcCC--------CCCCCeEEecCCcccchHHHHHH
Q 021235 273 LNAG--------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 273 ~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
++.+ ...|+++.|+|.+....+..++.
T Consensus 228 l~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 262 (323)
T PLN00011 228 IGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLAL 262 (323)
T ss_pred CCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHH
Confidence 6542 13678999999998888877765
No 25
>PLN03013 cysteine synthase
Probab=100.00 E-value=6.1e-39 Score=312.12 Aligned_cols=237 Identities=18% Similarity=0.125 Sum_probs=190.1
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC-----CEEEecCCchhHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHCRA 111 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~-----~~vVt~g~s~GNhg~a 111 (315)
++...+++|||++ ++.+++ +++||+|+|++|| +||+|+|.+.+++.++++.|. ++||+. |+||||+|
T Consensus 116 ~i~~~iG~TPLv~--l~~l~~~~g~~Iy~KlE~lNP--tGSfKdR~A~~~l~~a~~~G~l~pG~~~VVea--SSGN~G~A 189 (429)
T PLN03013 116 NVSQLIGKTPMVY--LNSIAKGCVANIAAKLEIMEP--CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP--TSGNTGIG 189 (429)
T ss_pred HHHhcCCCCCeEE--CcccccccCCeEEEEeccCCC--ccccHHHHHHHHHHHHHHcCCcCCCCcEEEEE--CCcHHHHH
Confidence 4567789999999 777766 6899999999999 699999999999999998885 457754 67999999
Q ss_pred HHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCC
Q 021235 112 AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVG 191 (315)
Q Consensus 112 lA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 191 (315)
+|++|+.+|++|+||||+..+ ..|+.+++.|||+|+.++.. +. ....++ .++++.++.+..| ++.+
T Consensus 190 LA~~a~~~G~~~~VvvP~~~s--------~~K~~~ira~GAeVi~v~~~-~~---~~~a~~-~A~ela~~~~g~~-~~~q 255 (429)
T PLN03013 190 LAFIAASRGYRLILTMPASMS--------MERRVLLKAFGAELVLTDPA-KG---MTGAVQ-KAEEILKNTPDAY-MLQQ 255 (429)
T ss_pred HHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHcCCEEEEECCC-CC---hHHHHH-HHHHHHhhcCCeE-eCCC
Confidence 999999999999999999875 35899999999999999763 21 112223 3445544333344 5567
Q ss_pred CCchhhHH-HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhh-HHHHHHH
Q 021235 192 GSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF-YDYTQGL 269 (315)
Q Consensus 192 ~~n~~~~~-G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~-~~~i~~l 269 (315)
+.|+.+.. ||.+++.||++|+. .++|+||+++|||||++|+++++|+.+|++||||||+.+++.+. .......
T Consensus 256 y~Np~n~~ah~~ttg~EI~eq~~-----~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~ 330 (429)
T PLN03013 256 FDNPANPKIHYETTGPEIWDDTK-----GKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHK 330 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcc
Confidence 78888864 89999999999985 36999999999999999999999999999999999999986542 1122234
Q ss_pred HhhhcCC--------CCCCCeEEecCCcccchHHHHHHH
Q 021235 270 LDGLNAG--------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 270 ~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
++|++.+ ..+|+++.|+|.+....+..|+.+
T Consensus 331 i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~ 369 (429)
T PLN03013 331 IQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALK 369 (429)
T ss_pred cCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHH
Confidence 5666653 257899999999999988888754
No 26
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=9.5e-40 Score=318.90 Aligned_cols=232 Identities=19% Similarity=0.208 Sum_probs=188.9
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++....++|||++ +++|++ |++||+|+|++|| +||||+|.+.+++.++. +.+.++||++ |+||||+++|++
T Consensus 15 ~i~~~i~~TPl~~--~~~ls~~~g~~i~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 88 (404)
T PRK08198 15 RLKGVVRRTPLEY--SRTLSELTGAEVYLKCENLQR--TGSFKIRGAYNKIASLSEEERARGVVAA--SAGNHAQGVAYA 88 (404)
T ss_pred HHhccCCCCCcee--hhhHHHHhCCEEEEEECCCCC--CCCCHHHHHHHHHHhccHhhcCCEEEEE--CCCHHHHHHHHH
Confidence 6667789999999 788877 8899999999999 69999999999998876 4556889976 459999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|+||||..++ ..|+++++.|||+|++++. .|++ .++ .++++.++. ..|+++ ++.|+
T Consensus 89 a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~-----~~~-~a~~~~~~~-g~~~~~-~~~~~ 151 (404)
T PRK08198 89 ASLLGIKATIVMPETAP--------LSKVKATRSYGAEVVLHGD-VYDE-----ALA-KAQELAEET-GATFVH-PFDDP 151 (404)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHH-----HHH-HHHHHHHhc-CCEecC-CCCCc
Confidence 99999999999999875 3479999999999999975 4653 223 233444433 234443 34567
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH----------HH
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DY 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~----------~~ 265 (315)
....||.++|.||++|++ ++|+||+|+|||||++|++.++|+.+|++|||||++.+++.+.. ..
T Consensus 152 ~~~~g~~t~a~EI~~q~~------~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~ 225 (404)
T PRK08198 152 DVIAGQGTIGLEILEDLP------DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELES 225 (404)
T ss_pred cHHHHHHHHHHHHHHhCC------CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCC
Confidence 778899999999999985 58999999999999999999999999999999999999876532 22
Q ss_pred HHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHH
Q 021235 266 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 266 i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
+..++++++.. ...|+++.|+|.+.+.++..++.
T Consensus 226 ~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (404)
T PRK08198 226 VDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLE 270 (404)
T ss_pred CCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 34456666531 35799999999999999888765
No 27
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=309.12 Aligned_cols=232 Identities=19% Similarity=0.263 Sum_probs=187.3
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC--CEEEecCCchhHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA--DCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~--~~vVt~g~s~GNhg~alA~ 114 (315)
++...+++|||++ +++|++ |.+||+|+|++|| +||||+|++.+++.++.+++. ..||+ +|+||||+++|+
T Consensus 14 ~i~~~~~~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~Rga~~~l~~a~~~~~~~~~vv~--aSsGN~g~alA~ 87 (322)
T PRK06110 14 VVYAAMPPTPQYR--WPLLAERLGCEVWVKHENHTP--TGAFKVRGGLVYFDRLARRGPRVRGVIS--ATRGNHGQSVAF 87 (322)
T ss_pred HHhCcCcCCCccc--chhHHHHhCCeEEEEeccCCC--cCCcHHHHHHHHHHHhhhhcCCCceEEE--ECCCHHHHHHHH
Confidence 5566779999999 788876 8899999999999 699999999999999987753 56664 467999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
+|+++|++|+||||...+ ..|.++++.|||+|+.++. .|++ ..+. ++++.++. ..|++|.. |
T Consensus 88 ~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~-~~~~-----~~~~-a~~~~~~~-~~~~~~~~--~ 149 (322)
T PRK06110 88 AARRHGLAATIVVPHGNS--------VEKNAAMRALGAELIEHGE-DFQA-----AREE-AARLAAER-GLHMVPSF--H 149 (322)
T ss_pred HHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----HHHH-HHHHHHhc-CCEEcCCC--C
Confidence 999999999999999874 2478999999999999875 4543 2233 33344432 36777753 5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------
Q 021235 195 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD---------- 264 (315)
Q Consensus 195 ~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~---------- 264 (315)
+....||.+++.||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||||++.+++.+...
T Consensus 150 ~~~~~G~~t~~~Ei~~q~~------~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~ 223 (322)
T PRK06110 150 PDLVRGVATYALELFRAVP------DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTP 223 (322)
T ss_pred ChHHhccchHHHHHHhhCC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCC
Confidence 6778899999999999984 489999999999999999999999999999999999988765321
Q ss_pred HHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 265 YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 265 ~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.+..++++++.. ...|+++.|+|.+.+..+..++.+
T Consensus 224 ~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~ 270 (322)
T PRK06110 224 VATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTD 270 (322)
T ss_pred CCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 123456665431 257899999999999999888753
No 28
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=4e-39 Score=301.71 Aligned_cols=229 Identities=19% Similarity=0.167 Sum_probs=180.2
Q ss_pred CCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHHHHHH
Q 021235 43 GHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~alA~aa 116 (315)
.+++|||++ +++|+. |.+||+|+|++|| +||||+|++.+++.+|+++|. ++||++ |+||||+++|++|
T Consensus 5 ~ig~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~a--SsGN~g~alA~~a 78 (290)
T TIGR01138 5 TVGNTPLVR--LQRMGPENGSEVWLKLEGNNP--AGSVKDRPALSMIVEAEKRGEIKPGDVLIEA--TSGNTGIALAMIA 78 (290)
T ss_pred hCCCCceEE--ccccccCCCCeEEEEEccCCC--CccHHHHHHHHHHHHHHHcCCCCCCCEEEEE--CCChHHHHHHHHH
Confidence 468999999 778765 7899999999999 699999999999999999987 678864 6799999999999
Q ss_pred HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 117 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
+++|++|++|||+..+ ..|+..++.|||+|+.++.. .++ .. .+.++++.++.+..| + .++.|+
T Consensus 79 ~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~v~~v~~~~~~~-----~~-~~~a~~l~~~~~~~~-~-~~~~~~ 142 (290)
T TIGR01138 79 ALKGYRMKLLMPDNMS--------QERKAAMRAYGAELILVTKEEGME-----GA-RDLALELANRGEGKL-L-DQFNNP 142 (290)
T ss_pred HHcCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH-----HH-HHHHHHHHHhCCCCC-C-CccCCc
Confidence 9999999999999874 34799999999999999853 232 12 334556665544433 3 334455
Q ss_pred hhHH-HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHHHhhhc
Q 021235 196 IGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLN 274 (315)
Q Consensus 196 ~~~~-G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g~~ 274 (315)
.+.. +|.+++.||++|+. .++|+||+|+|||||++|++.++|+.+|++||+|||+.++.... .+..+.+++.
T Consensus 143 ~~~~~~~~t~~~Ei~~q~~-----~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~--g~~~~~~~~~ 215 (290)
T TIGR01138 143 DNPYAHYTSTGPEIWQQTG-----GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIP--GIRRWPTEYL 215 (290)
T ss_pred ccHHHHhHhHHHHHHHHcC-----CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCcc--CCCCCCCCcC
Confidence 5544 46899999999985 36899999999999999999999999999999999999865421 1111111221
Q ss_pred C----CCCCCCeEEecCCcccchHHHHHHH
Q 021235 275 A----GVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 275 ~----~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
. ....|+++.|+|.+.+..+..|+.+
T Consensus 216 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~ 245 (290)
T TIGR01138 216 PGIFDASLVDRVLDIHQRDAENTMRELAVR 245 (290)
T ss_pred CcccChhhCcEEEEECHHHHHHHHHHHHHH
Confidence 1 1246899999999999998888763
No 29
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.2e-39 Score=322.60 Aligned_cols=237 Identities=21% Similarity=0.181 Sum_probs=191.3
Q ss_pred CcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhHHHHHH
Q 021235 36 PSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAA 112 (315)
Q Consensus 36 p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GNhg~al 112 (315)
-..|+.....+|||++ +++|++ |.+||+||||+|| +||||+|++.+++..+. +++.++||++ |+||||+++
T Consensus 10 ~~~~v~~~~~~TPL~~--~~~Ls~~~g~~i~lK~E~lqp--tgSfK~RgA~n~i~~l~~~~~~~gvV~a--SaGNha~av 83 (504)
T PRK09224 10 LTARVYDVAQETPLEK--APKLSARLGNQVLLKREDLQP--VFSFKLRGAYNKMAQLTEEQLARGVITA--SAGNHAQGV 83 (504)
T ss_pred HHHHhcCcCCCCCcee--hhHhHHHhCCEEEEEecCCCC--CCCChHHHHHHHHHhhhHHhcCCEEEEE--CcCHHHHHH
Confidence 3347777889999999 788887 8999999999999 69999999999988754 4456789976 469999999
Q ss_pred HHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCC
Q 021235 113 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 192 (315)
Q Consensus 113 A~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 192 (315)
|++|+++|++|+||||..+| ..|++.++.+||+|++++. .|+++ .+ .++++.++.+. +++++ +
T Consensus 84 A~aa~~lGi~~~IvmP~~tp--------~~K~~~~r~~GA~Vi~~g~-~~~~a-----~~-~a~~l~~~~g~-~~v~~-f 146 (504)
T PRK09224 84 ALSAARLGIKAVIVMPVTTP--------DIKVDAVRAFGGEVVLHGD-SFDEA-----YA-HAIELAEEEGL-TFIHP-F 146 (504)
T ss_pred HHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHHH-----HH-HHHHHHHhcCC-EEeCC-C
Confidence 99999999999999999875 3478999999999999986 46542 22 34455554433 44443 2
Q ss_pred CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH---------
Q 021235 193 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY--------- 263 (315)
Q Consensus 193 ~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~--------- 263 (315)
.|+..+.|+.+++.||++|++ ..+|+||+|+|||||++|++.++|..+|++|||||++.+++.+..
T Consensus 147 ~~~~~i~G~gTi~~EI~~q~~-----~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~ 221 (504)
T PRK09224 147 DDPDVIAGQGTIAMEILQQHP-----HPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVD 221 (504)
T ss_pred CCcHHHHhHHHHHHHHHHhcc-----CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCcc
Confidence 467888899999999999985 249999999999999999999999999999999999998876432
Q ss_pred -HHHHHHHhhhcC-----------CCCCCCeEEecCCcccchHHHHHHH
Q 021235 264 -DYTQGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 264 -~~i~~l~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+.+..+++++++ ....|+++.|+|.++|.++..++.+
T Consensus 222 ~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~ 270 (504)
T PRK09224 222 LPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFED 270 (504)
T ss_pred CCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHh
Confidence 123345566653 1357999999999999999888643
No 30
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=4e-39 Score=314.75 Aligned_cols=234 Identities=19% Similarity=0.195 Sum_probs=185.6
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHH-HHcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADA-VAQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a-~~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |.+||+|+|++|| +||||+|++.+++.++ .+++.++||++ |+||||+++|++
T Consensus 9 ~i~~~i~~TPl~~--~~~ls~~~g~~iy~K~E~~~p--tGSfK~RgA~~~i~~l~~~~~~~gvv~a--SsGN~g~a~A~~ 82 (409)
T TIGR02079 9 RLKEVVPHTPLQL--NERLSEKYGANIYLKREDLQP--VRSYKIRGAYNFLKQLSDAQLAKGVVCA--SAGNHAQGFAYA 82 (409)
T ss_pred HHhCcCCCCCccc--cHHHHHHhCCEEEEEecCCCC--CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHHHHHH
Confidence 6677889999999 788877 8899999999999 6999999999998764 33445678875 569999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEE---EEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCC
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI---ELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 192 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV---~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 192 (315)
|+++|++|+||||+.+| ..|+..++.|||+| +.++. .|++ .++. ++++.++.+ .+++++ +
T Consensus 83 a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~vv~v~~~g~-~~~~-----a~~~-a~~~~~~~g-~~~~~~-~ 145 (409)
T TIGR02079 83 CRHLGVHGTVFMPATTP--------KQKIDRVKIFGGEFIEIILVGD-TFDQ-----CAAA-AREHVEDHG-GTFIPP-F 145 (409)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHcCCCeeEEEEeCC-CHHH-----HHHH-HHHHHHhcC-CEEeCC-C
Confidence 99999999999999875 24799999999974 44443 4543 2333 334444332 455543 3
Q ss_pred CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH--------
Q 021235 193 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD-------- 264 (315)
Q Consensus 193 ~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~-------- 264 (315)
.|+....||.+++.||++|++ ..||+||+|+||||+++|++.++|+.+|++|||||++.+++.+...
T Consensus 146 ~~~~~~~g~~ti~~Ei~~q~~-----~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 220 (409)
T TIGR02079 146 DDPRIIEGQGTVAAEILDQLP-----EKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVT 220 (409)
T ss_pred CCHhHhhhhHHHHHHHHHhcC-----CCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcee
Confidence 578888899999999999986 2599999999999999999999999999999999999998765321
Q ss_pred --HHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 265 --YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 265 --~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
..+.+++|++.. ...|+++.|+|.+++.+++.++.+
T Consensus 221 ~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~ 269 (409)
T TIGR02079 221 LDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNL 269 (409)
T ss_pred cCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHh
Confidence 223456666641 247999999999999999888754
No 31
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-38 Score=300.94 Aligned_cols=235 Identities=18% Similarity=0.128 Sum_probs=186.1
Q ss_pred ccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC-----CEEEecCCchhHHHHHH
Q 021235 40 FSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHCRAA 112 (315)
Q Consensus 40 ~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~-----~~vVt~g~s~GNhg~al 112 (315)
+...+++|||++ ++.++. +.+||+|+|++|| +||||+|.+.+++..+.+.|. ++||+. |+||||+|+
T Consensus 9 ~~~~ig~TPLv~--l~~l~~~~~~~i~~K~E~~nP--tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~a--SsGN~g~al 82 (322)
T PLN02565 9 VTELIGKTPLVY--LNNVVDGCVARIAAKLEMMEP--CSSVKDRIGYSMITDAEEKGLIKPGESVLIEP--TSGNTGIGL 82 (322)
T ss_pred HHHHhCCCceEE--ccccCCCCCceEEEEecccCC--ccchHHHHHHHHHHHHHHcCCCCCCCcEEEEE--CCChHHHHH
Confidence 455679999999 777754 5799999999999 699999999999999988774 457865 669999999
Q ss_pred HHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCc-ccccChHHHHHHHHHHHHHhCCCcEEeCCC
Q 021235 113 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YSKIGSVTLTNILKEKLLKEGRRPYVIPVG 191 (315)
Q Consensus 113 A~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~-~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 191 (315)
|++|+.+|++|+||||+..+ ..|+.+++.|||+|+.++... ++ +.++ .++++.++.+..|+++ +
T Consensus 83 A~~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~~~~~~-----~~~~-~a~~l~~~~~~~~~~~-q 147 (322)
T PLN02565 83 AFMAAAKGYKLIITMPASMS--------LERRIILLAFGAELVLTDPAKGMK-----GAVQ-KAEEILAKTPNSYILQ-Q 147 (322)
T ss_pred HHHHHHcCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCCCCcH-----HHHH-HHHHHHHhCCCcEeec-c
Confidence 99999999999999999875 358999999999999998631 22 2333 3445555433455554 4
Q ss_pred CCchhh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH-HHHHHH
Q 021235 192 GSNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-DYTQGL 269 (315)
Q Consensus 192 ~~n~~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~-~~i~~l 269 (315)
+.|+.+ ..||.+++.||++|+. .++|+||+++||||+++|++.++|+.+|++||+|||+.+++.+.. ......
T Consensus 148 ~~n~~n~~~~~~t~a~Ei~~q~~-----~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~ 222 (322)
T PLN02565 148 FENPANPKIHYETTGPEIWKGTG-----GKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHK 222 (322)
T ss_pred cCCHhHHHHHHHHHHHHHHHhcC-----CCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCcc
Confidence 556644 3578999999999985 369999999999999999999999999999999999999865421 112334
Q ss_pred HhhhcCC--------CCCCCeEEecCCcccchHHHHHHH
Q 021235 270 LDGLNAG--------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 270 ~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+++++.. ..+|+++.|+|.+....+..|+.+
T Consensus 223 ~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~ 261 (322)
T PLN02565 223 IQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALK 261 (322)
T ss_pred CCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHH
Confidence 5666652 147899999999999999888864
No 32
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=6.6e-39 Score=310.62 Aligned_cols=225 Identities=19% Similarity=0.251 Sum_probs=184.5
Q ss_pred CCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC-CEEEecCCchhHHHHHHHHHHHHcCCeE
Q 021235 47 TPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA-DCIITIGGIQSNHCRAAAVAAKYLNLDC 123 (315)
Q Consensus 47 TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~-~~vVt~g~s~GNhg~alA~aa~~lGl~~ 123 (315)
|||++ +++|++ |.+||+|+|++|| +||||+|.+.+++.++.+.+. ++||++ |+||||+++|++|+++|++|
T Consensus 1 TPl~~--~~~ls~~~g~~i~~K~E~~~p--tgS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIY--STTLSDITGSEVYLKLENLQK--TGSFKIRGALNKIANLSEDQRQRGVVAA--SAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCcee--hHHHHHHhCCeEEEEecCCCC--CCCcHHHHHHHHHHhcchhccCCEEEEE--CCCHHHHHHHHHHHHcCCCE
Confidence 89999 788877 8999999999999 699999999999999887774 568865 55999999999999999999
Q ss_pred EEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHH
Q 021235 124 YLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIE 203 (315)
Q Consensus 124 ~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t 203 (315)
++|||+.++ ..|++.++.|||+|++++. .|++ . .+.++++.++.+ .++++. +.|+....||.+
T Consensus 75 ~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----a-~~~a~~~~~~~~-~~~~~~-~~~~~~~~g~~t 137 (380)
T TIGR01127 75 VIVMPESAP--------PSKVKATKSYGAEVILHGD-DYDE-----A-YAFATSLAEEEG-RVFVHP-FDDEFVMAGQGT 137 (380)
T ss_pred EEEEcCCCc--------HHHHHHHHHCCCEEEEECC-CHHH-----H-HHHHHHHHHhcC-CEecCC-CCChhhhhhhHH
Confidence 999999875 3589999999999999976 4653 2 233445555433 455543 346778889999
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH----------HHHHHHHhhh
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DYTQGLLDGL 273 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~----------~~i~~l~~g~ 273 (315)
++.||++|++ ++|+||+|+|||||++|++.++|..+|++|||||++.+++.+.. ..+..+++|+
T Consensus 138 ~~~Ei~~q~~------~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~ 211 (380)
T TIGR01127 138 IGLEIMEDIP------DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGI 211 (380)
T ss_pred HHHHHHHhCC------CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecch
Confidence 9999999984 59999999999999999999999999999999999999876432 1234456666
Q ss_pred cCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 274 NAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 274 ~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+.. ...|+++.|+|.+++.+++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~ 249 (380)
T TIGR01127 212 AVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLER 249 (380)
T ss_pred hCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 631 257999999999999999988754
No 33
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.1e-38 Score=300.33 Aligned_cols=233 Identities=17% Similarity=0.148 Sum_probs=184.5
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |.+||+|+|++|| +||||+|++.+++.++. +++.++||+. |+||||+|+|++
T Consensus 12 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 85 (317)
T TIGR02991 12 RISGRVEETPLVE--SPSLSELCGVPVHLKLEHRQT--TGSFKLRGATNAVLSLSDTQRAAGVVAA--STGNHGRALAYA 85 (317)
T ss_pred HHhCcCCCCCcee--chhhHHhhCCeEEEEeccCCC--CCCcHHHHHHHHHHhhhHhccCCeEEEE--CCCHHHHHHHHH
Confidence 5566779999999 788876 7899999999999 79999999999998765 4456778854 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|++|||+..+ ..|+..++.|||+|+.++. .|++. .+ .++++.++. ..|+++ ++.|+
T Consensus 86 a~~~G~~~~v~~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~~-----~~-~a~~~~~~~-g~~~~~-~~~n~ 148 (317)
T TIGR02991 86 AAEEGVRATICMSELVP--------QNKVDEIRRLGAEVRIVGR-SQDDA-----QE-EVERLVADR-GLTMLP-PFDHP 148 (317)
T ss_pred HHHhCCCEEEEcCCCCC--------HHHHHHHHHcCCEEEEeCC-CHHHH-----HH-HHHHHHHhc-CCEeeC-CCCCh
Confidence 99999999999999874 3589999999999999986 35432 12 233444432 244443 34578
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
....||.+++.||++|++ ++|+||+|+|+|||++|+++++|+.+|++|||||++++++..... .
T Consensus 149 ~~~~g~~t~a~Ei~~q~~------~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~ 222 (317)
T TIGR02991 149 DIVAGQGTLGLEVVEQMP------DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAE 222 (317)
T ss_pred HHHhhHHHHHHHHHHhCC------CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCC
Confidence 888999999999999985 489999999999999999999999999999999999876544321 1
Q ss_pred HHHHHhhh----cC---------CCCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGL----NA---------GVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~----~~---------~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...+++++ +. ....|+++.|+|.+.+..+..++.+
T Consensus 223 ~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~ 270 (317)
T TIGR02991 223 LPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAE 270 (317)
T ss_pred CCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 12344433 32 1357999999999999998888753
No 34
>PLN02970 serine racemase
Probab=100.00 E-value=1.1e-38 Score=303.44 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=185.7
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHH-cCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~-~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |++||+|+|++|| +||||+|.+.+++.++.+ .+.++||++ |+||||+|+|++
T Consensus 20 ~i~~~i~~TPL~~--~~~l~~~~g~~i~~K~E~~np--tGSfKdRga~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 93 (328)
T PLN02970 20 RIAPFIHRTPVLT--SSSLDALAGRSLFFKCECFQK--GGAFKFRGACNAIFSLSDDQAEKGVVTH--SSGNHAAALALA 93 (328)
T ss_pred HHhCcCCCCCeee--chhhHHhhCCeEEEEecCCCC--CCCcHHHHHHHHHHHhhHhhcCCeEEEE--CCcHHHHHHHHH
Confidence 4555679999999 788876 8899999999999 699999999999988764 446788865 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+.+|++|+||||+..+ ..|+..+++|||+|+.++. .++. . .+.++++.++. +.|++++ +.|+
T Consensus 94 a~~~G~~~~ivvp~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~-----~-~~~a~~la~~~-g~~~~~~-~~n~ 156 (328)
T PLN02970 94 AKLRGIPAYIVVPKNAP--------ACKVDAVIRYGGIITWCEP-TVES-----R-EAVAARVQQET-GAVLIHP-YNDG 156 (328)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHhcCCEEEEeCC-CHHH-----H-HHHHHHHHHhc-CCEEeCC-CCCc
Confidence 99999999999999875 2478899999999999986 3442 2 23344555542 3555543 4567
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
...+||.+++.||++|+. .||+||+|+|||||++|+++++|+.+|++|||+|++.+++.+... .
T Consensus 157 ~~~~g~~t~g~Ei~~ql~------~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~ 230 (328)
T PLN02970 157 RVISGQGTIALEFLEQVP------ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPV 230 (328)
T ss_pred chhhehHHHHHHHHHhcc------CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCC
Confidence 778899999999999985 499999999999999999999999999999999999998654321 1
Q ss_pred HHHHHhhhcC----------CCCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGLNA----------GVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~~~----------~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...++++++. ....|+++.|+|.+.+.++..++..
T Consensus 231 ~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~ 275 (328)
T PLN02970 231 TNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYER 275 (328)
T ss_pred CCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHh
Confidence 1234444432 1246899999999999998888753
No 35
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=7.7e-39 Score=303.69 Aligned_cols=233 Identities=17% Similarity=0.192 Sum_probs=185.4
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |++||+|+|++|| +||||+|.+.+++.++. +.+.++||++ |+||||+|+|++
T Consensus 17 ~i~~~~~~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 90 (321)
T PRK07048 17 RLAGVAHRTPVLT--SRTADARTGAQVFFKCENFQR--MGAFKFRGAYNALSQFSPEQRRAGVVTF--SSGNHAQAIALS 90 (321)
T ss_pred HhhCCCCCCCCcc--chhhHHhcCCeEEEEeccCCC--CCCeeHHHHHHHHHhhhHhhcCCcEEEe--CCCHHHHHHHHH
Confidence 6667789999999 788875 7899999999999 69999999999998877 4456788876 459999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+.+|++|++|||...+ ..|+..++.|||+|++++. .+++ . .+.++++.++.+ .|++++ +.|+
T Consensus 91 a~~~G~~~~vvvp~~~~--------~~k~~~~~~~GAeV~~~~~-~~~~-----~-~~~a~~l~~~~g-~~~~~~-~~~~ 153 (321)
T PRK07048 91 ARLLGIPATIVMPQDAP--------AAKVAATRGYGGEVVTYDR-YTED-----R-EEIGRRLAEERG-LTLIPP-YDHP 153 (321)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECC-CHHH-----H-HHHHHHHHHhcC-CEEECC-CCCc
Confidence 99999999999999874 3589999999999999986 3432 1 234556665543 444443 3456
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
....||.+++.||++|+. .||+||+|+|||||++|++.++|+.+++++||||++.+++.+... .
T Consensus 154 ~~~~g~~t~~~EI~~q~~------~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~ 227 (321)
T PRK07048 154 HVIAGQGTAAKELFEEVG------PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDT 227 (321)
T ss_pred chhhccchHHHHHHhhcC------CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCC
Confidence 667888899999999984 599999999999999999999999999999999999987643221 1
Q ss_pred HHHHHhhhcC-----------CCCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...+++++.. ....|+++.|+|.+...++..|+..
T Consensus 228 ~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 273 (321)
T PRK07048 228 PRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAER 273 (321)
T ss_pred CCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHh
Confidence 1223333332 1257899999999999998888654
No 36
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2.5e-38 Score=302.09 Aligned_cols=244 Identities=20% Similarity=0.170 Sum_probs=192.0
Q ss_pred CCChhhhcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC--CEEEe
Q 021235 25 PPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA--DCIIT 100 (315)
Q Consensus 25 ~p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~--~~vVt 100 (315)
|+++.+...... ++...+++|||++ +++|++ |++||+|+|++|| +||||+|++.+++.++.++|. ++||+
T Consensus 4 ~~~~~~i~~A~~--~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~v~~a~~~g~~~~~vv~ 77 (338)
T PRK06608 4 LQNPQNIAAAHN--RIKQYLHLTPIVH--SESLNEMLGHEIFFKVESLQK--TGAFKVRGVLNHLLELKEQGKLPDKIVA 77 (338)
T ss_pred CCCHHHHHHHHH--HHhCcCcCCCccc--hHhHHHHhCCEEEEEeCCCCC--CCCcHHHHHHHHHHHhhhhcCcCCeEEE
Confidence 344444444434 5667789999999 788876 8899999999999 699999999999999999887 68886
Q ss_pred cCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHH
Q 021235 101 IGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 101 ~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~ 180 (315)
+ |+||||+++|++|+++|++|++|||...+ ..|+.+++.|||+|+.++. +++ ..+. +++ .+
T Consensus 78 ~--SsGN~g~alA~~a~~~G~~~~vv~p~~~~--------~~k~~~l~~~GA~V~~~~~--~~~-----~~~~-a~~-~~ 138 (338)
T PRK06608 78 Y--STGNHGQAVAYASKLFGIKTRIYLPLNTS--------KVKQQAALYYGGEVILTNT--RQE-----AEEK-AKE-DE 138 (338)
T ss_pred E--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC--HHH-----HHHH-HHH-HH
Confidence 5 67999999999999999999999999874 3489999999999999964 222 2222 333 33
Q ss_pred hCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCch
Q 021235 181 EGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 260 (315)
Q Consensus 181 ~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~ 260 (315)
+ +..|++++. .|+....||.+++.||++|+. .++|+||+++|||||++|++.++|..+++++|+|||+.+++.
T Consensus 139 ~-~~~~~~~~~-~~~~~~~g~~t~a~Ei~~q~~-----~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~ 211 (338)
T PRK06608 139 E-QGFYYIHPS-DSDSTIAGAGTLCYEALQQLG-----FSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNAND 211 (338)
T ss_pred h-CCCEEcCCC-CCHHHhccHHHHHHHHHHhcC-----CCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChH
Confidence 2 346777654 467778899999999999985 369999999999999999999999999999999999998764
Q ss_pred hhHH-----------HHHHHHhhhcCC----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 261 YFYD-----------YTQGLLDGLNAG----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 261 ~~~~-----------~i~~l~~g~~~~----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.... ....+.++++.. ...|+++.|+|.+.+..+..++.+
T Consensus 212 ~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~ 272 (338)
T PRK06608 212 AYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHL 272 (338)
T ss_pred HHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHH
Confidence 3211 113355555531 146899999999999887777653
No 37
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=6.8e-38 Score=304.61 Aligned_cols=242 Identities=18% Similarity=0.118 Sum_probs=180.5
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCC---EEEecCCchhHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGAD---CIITIGGIQSNHCRAAA 113 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~---~vVt~g~s~GNhg~alA 113 (315)
.+...+++|||++ +++|+. |.+||+|+|++|| +||||+|.+.+++.+|+++|.. .+|+. +|+||||+++|
T Consensus 46 ~~~~~ig~TPLv~--~~~l~~~~g~~v~~KlE~~nP--tGS~KdR~A~~~i~~a~~~g~~~~~g~Vve-aSSGN~g~alA 120 (423)
T PLN02356 46 GLIDAIGNTPLIR--INSLSEATGCEILGKCEFLNP--GGSVKDRVAVKIIEEALESGQLFPGGVVTE-GSAGSTAISLA 120 (423)
T ss_pred hHHhhcCCCceEE--CcccccccCCEEEEEeccCCC--CCCHHHHHHHHHHHHHHhCCccCCCCEEEE-eCCHHHHHHHH
Confidence 3445569999999 788876 8899999999999 6999999999999999987743 34543 46799999999
Q ss_pred HHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC------cccccChH--HHHHHHHHHHHHh----
Q 021235 114 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE------EYSKIGSV--TLTNILKEKLLKE---- 181 (315)
Q Consensus 114 ~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~------~~~~~~~~--~~~~~~~~~l~~~---- 181 (315)
++|+.+|++|+||||+..+ ..|++.++.|||+|+.++.. .|...... +...++++++.+.
T Consensus 121 ~~aa~~G~~~~ivvP~~~s--------~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~ 192 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVA--------IEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETD 192 (423)
T ss_pred HHHHHcCCcEEEEECCCCc--------HHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999875 35899999999999999631 11100000 0011122222110
Q ss_pred ------------------------CCCcEEeCCCCCchhh--HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHH
Q 021235 182 ------------------------GRRPYVIPVGGSNSIG--TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIA 235 (315)
Q Consensus 182 ------------------------~~~~y~ip~g~~n~~~--~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~a 235 (315)
.+. ++++.++.|+.+ ..|+ .+|.||++|++ .++|+||+++|||||++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~n~~n~~ahg~-gTg~EI~eQl~-----g~~D~vVv~vGtGGti~ 265 (423)
T PLN02356 193 GIHLEKTNGCISEEEKENSLFSSSCTG-GFFADQFENLANFRAHYE-GTGPEIWEQTQ-----GNLDAFVAAAGTGGTLA 265 (423)
T ss_pred cccccccccccccccccccccccCCCC-cEecCccCCcchHHHHHh-hHHHHHHHhcC-----CCCCEEEeCCCchHHHH
Confidence 022 344566667765 3333 46999999985 36999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEeccCCchhhH--------------H----HHHHHHhhhcCC--------CCCCCeEEecCCc
Q 021235 236 GLSLGSWLGTLKAKVHAFSVCDDPDYFY--------------D----YTQGLLDGLNAG--------VDSRDIVNIQNVS 289 (315)
Q Consensus 236 Gl~~~~k~~~~~~rVigV~~~g~~~~~~--------------~----~i~~l~~g~~~~--------~~~~dvv~v~e~~ 289 (315)
|+++++|+.+|++||++||+.++..+.. . ..+.+++|++.. ..+|+++.|+|.+
T Consensus 266 Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~e 345 (423)
T PLN02356 266 GVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKE 345 (423)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHH
Confidence 9999999999999999999998763311 0 013467777763 2579999999999
Q ss_pred ccchHHHHHHH
Q 021235 290 VYMTFKNILMN 300 (315)
Q Consensus 290 ~~~~~~~~~~~ 300 (315)
....+.+++..
T Consensus 346 a~~a~r~L~~~ 356 (423)
T PLN02356 346 AVEMSRYLLKN 356 (423)
T ss_pred HHHHHHHHHHH
Confidence 99988887753
No 38
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.7e-38 Score=297.36 Aligned_cols=191 Identities=21% Similarity=0.187 Sum_probs=161.1
Q ss_pred CCCCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHc
Q 021235 43 GHFPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL 119 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~l 119 (315)
.+++|||++ +++|++ | .+||+|+|++|| +||||+|++.+++.+|+++|.++||+. |+||||+|+|++|+.+
T Consensus 12 ~~g~TPL~~--~~~l~~~~G~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~lv~a--SsGN~g~alA~~aa~~ 85 (319)
T PRK06381 12 PPGGTPLLR--ARKLEEELGLRKIYLKFEGANP--TGTQKDRIAEAHVRRAMRLGYSGITVG--TCGNYGASIAYFARLY 85 (319)
T ss_pred cCCCCceeE--hHhhHHhcCCceEEEEecCCCC--ccCcHHHHHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHHHHHc
Confidence 358999999 788876 6 599999999999 799999999999999999999999864 6699999999999999
Q ss_pred CCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch-hhH
Q 021235 120 NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS-IGT 198 (315)
Q Consensus 120 Gl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~-~~~ 198 (315)
|++|++|||...+ ..|+.+++.|||+|+.++.. |++ ..+. ++++.+. ...|++++++.|+ .+.
T Consensus 86 G~~~~ivvp~~~~--------~~~~~~l~~~GA~V~~~~~~-~~~-----~~~~-a~~~~~~-~~~~~~~~~~~n~~~~~ 149 (319)
T PRK06381 86 GLKAVIFIPRSYS--------NSRVKEMEKYGAEIIYVDGK-YEE-----AVER-SRKFAKE-NGIYDANPGSVNSVVDI 149 (319)
T ss_pred CCcEEEEECCCCC--------HHHHHHHHHcCCEEEEcCCC-HHH-----HHHH-HHHHHHH-cCcEecCCCCCCcchHh
Confidence 9999999998764 35799999999999999863 543 2222 3333333 2467776655465 688
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcC------CCCCeEEEEeccCCch
Q 021235 199 WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TLKAKVHAFSVCDDPD 260 (315)
Q Consensus 199 ~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~------~~~~rVigV~~~g~~~ 260 (315)
+||.+++.||++|+. ..||+||+|+|||||++|++.++++. ++.+||++|++.+.+.
T Consensus 150 ~G~~t~a~Ei~~ql~-----~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~ 212 (319)
T PRK06381 150 EAYSAIAYEIYEALG-----DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQ 212 (319)
T ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCH
Confidence 999999999999985 36999999999999999999999998 7899999999998654
No 39
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=7.3e-38 Score=309.49 Aligned_cols=236 Identities=18% Similarity=0.124 Sum_probs=186.8
Q ss_pred cCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC----CEEEecCCchhHHHHHHHH
Q 021235 41 SLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~----~~vVt~g~s~GNhg~alA~ 114 (315)
....++|||++ +++|+. |++||+|+|++|| +||||+|++.+++.+++++|. ++||++ |+||||+|+|+
T Consensus 6 ~~~~~~TPl~~--~~~l~~~~~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~--ssGN~g~alA~ 79 (454)
T TIGR01137 6 IDLIGNTPLVR--LNKVSKGIKCELLAKCEFFNP--GGSVKDRIALRMIEDAEASGRLKPGDTIIEP--TSGNTGIGLAL 79 (454)
T ss_pred HHhcCCCceEE--ccccCCCCCceEEEEEhhcCC--CcchHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHHHHHHHH
Confidence 34568999999 788877 6799999999999 699999999999999999887 778876 67999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCCCC
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 193 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~ 193 (315)
+|+++|++|++|||+..+ ..|+..++.|||+|+.++.. .++.. ... .+.++++.+++++ ++++.++.
T Consensus 80 ~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~~~--~~~-~~~a~~l~~~~~~-~~~~~~~~ 147 (454)
T TIGR01137 80 VAAIKGYKCIIVLPEKMS--------NEKVDVLKALGAEIVRTPTAAAFDSP--ESH-IGVAKRLVREIPG-AHILDQYN 147 (454)
T ss_pred HHHHcCCeEEEEeCCCcC--------HHHHHHHHHCCCEEEEcCCccCCCch--HHH-HHHHHHHHHhCCC-cEecccCC
Confidence 999999999999998874 35899999999999999752 23321 112 2234456655444 45666666
Q ss_pred chhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHH------
Q 021235 194 NSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT------ 266 (315)
Q Consensus 194 n~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i------ 266 (315)
|+.+. .||.+++.||++|++ .+||+||+|+|||||++|++.++|+.+|++||+||+++++..+....+
T Consensus 148 ~~~~~~~~~~t~~~Ei~~q~~-----~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~ 222 (454)
T TIGR01137 148 NPSNPLAHYDGTGPEILEQCE-----GKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRT 222 (454)
T ss_pred ChhhHHHHHHhhHHHHHHHhC-----CCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCC
Confidence 66654 589999999999995 369999999999999999999999999999999999999865432211
Q ss_pred HHHHhhhcCC--------CCCCCeEEecCCcccchHHHHHH
Q 021235 267 QGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 267 ~~l~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
...+++++.+ ...|+++.|+|.+....+..++.
T Consensus 223 ~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~ 263 (454)
T TIGR01137 223 PYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIK 263 (454)
T ss_pred CccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHH
Confidence 1245555532 13578999999988888777665
No 40
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.2e-38 Score=305.74 Aligned_cols=232 Identities=22% Similarity=0.260 Sum_probs=183.6
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa 116 (315)
++++.+++|||++ +++|++ |++||+|+|++|| +||||+|++.+++.++.++|.++||++ |+||||+|+|++|
T Consensus 21 ~~~l~~G~TPL~~--~~~l~~~~g~~l~~K~E~~np--tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~AlA~~a 94 (351)
T PRK06352 21 MISLAEGNTPLIP--LPNLSKELGVTLYGKYEGLNP--TGSFKDRGMVMAVAKAKEEGAEAVICA--STGNTSAAAAAYA 94 (351)
T ss_pred ccccCCCCCCeeE--cHhhHHHhCCeEEEEecCCCC--ccChHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHH
Confidence 6889999999999 788876 7899999999999 799999999999999999999999976 6799999999999
Q ss_pred HHcCCeEEEEecCCC-cccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 117 KYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~-~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
+++|++|+||||+.. + ..|+.++++|||+|+.++. .|++ . .+.++++.++. ..+++ +..|+
T Consensus 95 a~~G~~~~ivvp~~~~~--------~~k~~~~~a~GA~V~~~~~-~~~~-----~-~~~a~~~~~~~-~~~~~--~~~n~ 156 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVA--------LGKLAQAVMYGADIISIQG-NFDE-----A-LKSVRELAETE-AVTLV--NSVNP 156 (351)
T ss_pred HHcCCcEEEEEeCCCCc--------HHHHHHHHhcCCEEEEECC-CHHH-----H-HHHHHHHHHhc-Ccccc--cCCCc
Confidence 999999999999863 3 3579999999999999986 3543 2 22344455432 22333 34588
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCC-----CeEEEEeccCCchhhHHH----H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK-----AKVHAFSVCDDPDYFYDY----T 266 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~-----~rVigV~~~g~~~~~~~~----i 266 (315)
.+.+||.+++.||++|+. ..||+||+|+|||||++|+++++|+.+++ +|||||++.+++.....+ .
T Consensus 157 ~~~~G~~t~~~EI~~Q~~-----~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~ 231 (351)
T PRK06352 157 YRLEGQKTAAFEICEQLG-----SAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNP 231 (351)
T ss_pred cceeeHHHHHHHHHHHcC-----CCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCC
Confidence 899999999999999985 36999999999999999999999998776 899999999876432211 1
Q ss_pred HHHHhhhcCC-------------CCCCCeEEecCCcccchHHHHHH
Q 021235 267 QGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 267 ~~l~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
+.+.+++... ....+++.|+|.+.+..+..+..
T Consensus 232 ~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~ 277 (351)
T PRK06352 232 ETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAA 277 (351)
T ss_pred CcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 1222332211 01123899999998888877765
No 41
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.4e-38 Score=312.14 Aligned_cols=237 Identities=18% Similarity=0.188 Sum_probs=184.9
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++....++|||++ +++|++ |++||+|+|++|| +||||+|.+.+++.++. +.+.++||++ |+||||+++|++
T Consensus 18 ~i~~~i~~TPl~~--~~~ls~~~g~~l~~K~E~~~p--tGSfK~RgA~~~i~~l~~~~~~~~Vv~a--SsGN~g~alA~~ 91 (420)
T PRK08639 18 RLKDVVPETPLQR--NDYLSEKYGANVYLKREDLQP--VRSYKLRGAYNAISQLSDEELAAGVVCA--SAGNHAQGVAYA 91 (420)
T ss_pred HHhCcCcCCCccc--hHHHHHHhCCEEEEEecCCCC--CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHHHHHH
Confidence 6777889999999 788876 8899999999999 79999999999988742 3345678875 569999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc--CCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCC
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS--KEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 193 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~--~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~ 193 (315)
|+++|++|+||||+.+| ..|+..+|.|||+|+.|. ...|++ .++. ++++.++.+ .+++++ +.
T Consensus 92 a~~~G~~~~IvmP~~~~--------~~k~~~~r~~GA~vv~v~~~g~~~~~-----a~~~-a~~~a~~~g-~~~~~~-~~ 155 (420)
T PRK08639 92 CRHLGIPGVIFMPVTTP--------QQKIDQVRFFGGEFVEIVLVGDTFDD-----SAAA-AQEYAEETG-ATFIPP-FD 155 (420)
T ss_pred HHHcCCCEEEEECCCCh--------HHHHHHHHHcCCCeeEEEEeCcCHHH-----HHHH-HHHHHHhcC-CcccCC-CC
Confidence 99999999999999875 247999999999754332 223543 2333 334444332 344433 34
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH----------
Q 021235 194 NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY---------- 263 (315)
Q Consensus 194 n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~---------- 263 (315)
|+....||.+++.||++|++.. ..+|+||+|+|||||++|++.++|+.+|++|||||++.+++.+..
T Consensus 156 ~~~~~~G~~tig~EI~eq~~~~---~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~ 232 (420)
T PRK08639 156 DPDVIAGQGTVAVEILEQLEKE---GSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTL 232 (420)
T ss_pred ChhHhcchhHHHHHHHHhcccc---CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeC
Confidence 7788889999999999998620 029999999999999999999999999999999999999876431
Q ss_pred HHHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 264 DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 264 ~~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+.+..+++|+++. ...|+++.|+|.+++.++..++.+
T Consensus 233 ~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~ 280 (420)
T PRK08639 233 EKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNK 280 (420)
T ss_pred CCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 1234566776641 247999999999999999888753
No 42
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=4.9e-38 Score=298.27 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=187.0
Q ss_pred cccCCCCCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++.+..++|||++ +++|+. | .+||+|+|++|| +||||+|++.+++.++.++|.++||+. |+||||+|+|++
T Consensus 15 ~~~l~~g~TPl~~--~~~l~~~~g~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~vv~~--SsGN~g~alA~~ 88 (324)
T cd01563 15 IVSLGEGNTPLVR--APRLGERLGGKNLYVKDEGLNP--TGSFKDRGMTVAVSKAKELGVKAVACA--STGNTSASLAAY 88 (324)
T ss_pred cccCCCCCCceee--chhhHhhcCCCceEEEecCCCC--cccHHHhhHHHHHHHHHHcCCCEEEEe--CCCHHHHHHHHH
Confidence 6889999999999 788875 4 799999999999 799999999999999999999999975 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+.+|++|++|||...+ ..|+.+++.+||+|+.++. .|++ ..+ .++++.++. .+++ .++.|+
T Consensus 89 a~~~G~~~~ivvp~~~~--------~~k~~~l~~~GA~Vi~~~~-~~~~-----~~~-~a~~~~~~~--~~~~-~~~~n~ 150 (324)
T cd01563 89 AARAGIKCVVFLPAGKA--------LGKLAQALAYGATVLAVEG-NFDD-----ALR-LVRELAEEN--WIYL-SNSLNP 150 (324)
T ss_pred HHHcCCceEEEEeCCCC--------HHHHHHHHHcCCEEEEECC-cHHH-----HHH-HHHHHHHhc--Ceec-cCCCCc
Confidence 99999999999999874 3589999999999999986 3543 222 344555543 3333 335788
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCC------CCCeEEEEeccCCchhhHH-----
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT------LKAKVHAFSVCDDPDYFYD----- 264 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~------~~~rVigV~~~g~~~~~~~----- 264 (315)
.+.+||.+++.||++|+.. ..+|+||+|+|||||++|++.++|... ++++||||++.+++.....
T Consensus 151 ~~~~g~~t~~~Ei~~q~~~----~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~ 226 (324)
T cd01563 151 YRLEGQKTIAFEIAEQLGW----EVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGK 226 (324)
T ss_pred ceecchhhhHHHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCC
Confidence 8889999999999999851 259999999999999999999999864 5899999999987544321
Q ss_pred -------HHHHHHhhhcCC-------------CCCCCeEEecCCcccchHHHHHHH
Q 021235 265 -------YTQGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 265 -------~i~~l~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
....++++++.. ...++++.|+|.+.+.++..+...
T Consensus 227 ~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 282 (324)
T cd01563 227 DDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLART 282 (324)
T ss_pred CccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhc
Confidence 112223344321 123689999999999998887764
No 43
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=8.5e-38 Score=300.09 Aligned_cols=233 Identities=19% Similarity=0.212 Sum_probs=182.8
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa 116 (315)
++.+.+++|||++ ++.|++ |++||+|+|++|| +||||+|++.+++.++.++|.++||++ |+||||+|+|++|
T Consensus 21 ~~~l~~G~TPl~~--l~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~alA~~a 94 (352)
T PRK06721 21 DVSLMEGNTPLIP--LLNISKQLGIQLYGKYEGANP--TGSFKDRGMVMAVAKAKEEGSEAIICA--STGNTSASAAAYA 94 (352)
T ss_pred ccccCcCCCCeeE--chhhHHHhCCeEEEEecCCCC--ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHH
Confidence 5778889999999 788875 7899999999999 799999999999999999999999976 6799999999999
Q ss_pred HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchh
Q 021235 117 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI 196 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~ 196 (315)
+++|++|++|||+... + ..|+++++.+||+|+.++. .|++ .. +.++++.++. ..+++ +..|+.
T Consensus 95 a~~G~~~~vvvp~~~~-----~--~~k~~~~~~~GA~V~~~~~-~~~~-----~~-~~a~~~~~~~-~~~~~--~~~n~~ 157 (352)
T PRK06721 95 ARLGMKCIIVIPEGKI-----A--HGKLAQAVAYGAEIISIEG-NFDD-----AL-KAVRNIAAEE-PITLV--NSVNPY 157 (352)
T ss_pred HHCCCcEEEEECCCCC-----C--HHHHHHHHHcCCEEEEECC-CHHH-----HH-HHHHHHHHhC-Cceec--cCCCch
Confidence 9999999999998641 0 3589999999999999986 3543 22 2334444432 23444 345888
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHH----HHHhcCC-CCCeEEEEeccCCchhhHHH----HH
Q 021235 197 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLS----LGSWLGT-LKAKVHAFSVCDDPDYFYDY----TQ 267 (315)
Q Consensus 197 ~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~----~~~k~~~-~~~rVigV~~~g~~~~~~~~----i~ 267 (315)
..+||.+++.||++|+. ..+|+||+|+||||+++|++ .++|..+ |++||||||+.+++.....+ ..
T Consensus 158 ~~~G~~t~~~Ei~eq~~-----~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~ 232 (352)
T PRK06721 158 RIEGQKTAAFEICDQLQ-----RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPE 232 (352)
T ss_pred hhhhhhhHHHHHHHHhC-----CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCC
Confidence 89999999999999985 35999999999999999855 4455554 89999999999876543221 11
Q ss_pred HHHhhhcC-------------CCCCCCeEEecCCcccchHHHHHH
Q 021235 268 GLLDGLNA-------------GVDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 268 ~l~~g~~~-------------~~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
.+.++++. ....|+++.|+|.+....+..+..
T Consensus 233 tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~ 277 (352)
T PRK06721 233 TIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAK 277 (352)
T ss_pred ceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHH
Confidence 23333332 114678999999999988887764
No 44
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.7e-38 Score=298.59 Aligned_cols=233 Identities=17% Similarity=0.195 Sum_probs=184.2
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHH-cCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~-~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |++||+|+|++|| +||||+|.+.+++.++.+ .+.++||+. |+||||+++|++
T Consensus 20 ~i~~~i~~TPlv~--~~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~i~~~~~~~~~~~vv~~--SsGN~g~alA~~ 93 (333)
T PRK08638 20 RLAGRIRKTPLPR--SNYLSERCKGEIFLKLENMQR--TGSFKIRGAFNKLSSLTDAEKRKGVVAC--SAGNHAQGVALS 93 (333)
T ss_pred HhhCcCcCCCcee--chhhHHhhCCeEEEEeccCCc--cCCcHHHHHHHHHHhccHHhcCCeEEEe--CCcHHHHHHHHH
Confidence 6667789999999 788876 7899999999999 699999999999987654 456778875 559999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+.+|++|+||||+..+ ..|+.++|.|||+|+.++. .|++ .++ .++++.++. ..|+++ ++.|+
T Consensus 94 aa~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----~~~-~a~~~a~~~-g~~~~~-~~~~~ 156 (333)
T PRK08638 94 CALLGIDGKVVMPKGAP--------KSKVAATCGYGAEVVLHGD-NFND-----TIA-KVEEIVEEE-GRTFIP-PYDDP 156 (333)
T ss_pred HHHcCCCEEEEeCCCCc--------HHHHHHHHHcCCEEEEECc-CHHH-----HHH-HHHHHHHhc-CCEEcC-cCCCc
Confidence 99999999999999875 3479999999999999975 3543 223 233444433 235444 34578
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
...+||.+++.||++|+. ++|+||+|+|||||++|++.++|+.+|++||+|||+.+++.+... .
T Consensus 157 ~~~~g~~t~a~Ei~~q~~------~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~ 230 (333)
T PRK08638 157 KVIAGQGTIGLEILEDLW------DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRT 230 (333)
T ss_pred chhccccHHHHHHHhhcC------CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCC
Confidence 889999999999999984 489999999999999999999999999999999999987542211 1
Q ss_pred HHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...+.++++.. ...|+++.|+|.+.+..+..++.+
T Consensus 231 ~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~ 276 (333)
T PRK08638 231 TGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQR 276 (333)
T ss_pred CCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 11233443321 257899999999999998888754
No 45
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-37 Score=304.04 Aligned_cols=233 Identities=17% Similarity=0.169 Sum_probs=188.3
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHH-cCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~-~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++...+++|||++ +++|++ |.+||+|+|++|| +||||+|.+.+++.++.+ .+.++||++ |+||||+|+|++
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~KdR~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 89 (403)
T PRK07334 16 RLAGQVLRTPCVH--SRTLSQITGAEVWLKFENLQF--TASFKERGALNKLLLLTEEERARGVIAM--SAGNHAQGVAYH 89 (403)
T ss_pred HHhCCCCCCCccc--hHHHHHhhCCeEEEEeccCCC--CCCchHHHHHHHHHhcCHHHhCCcEEEE--CCcHHHHHHHHH
Confidence 5666779999999 788876 8899999999999 699999999999887543 345668865 569999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|++|||...+ ..|+.+++.|||+|+.++. .|++ . .+.++++.++. ..|+++ ++.|+
T Consensus 90 a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~v~~~~~-~~~~-----~-~~~a~~l~~~~-~~~~~~-~~~~~ 152 (403)
T PRK07334 90 AQRLGIPATIVMPRFTP--------TVKVERTRGFGAEVVLHGE-TLDE-----A-RAHARELAEEE-GLTFVH-PYDDP 152 (403)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEECc-CHHH-----H-HHHHHHHHHhc-CCEecC-CCCCH
Confidence 99999999999999875 3589999999999999875 3543 2 22455566543 345443 45578
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHH--------HH
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY--------TQ 267 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~--------i~ 267 (315)
....||.+++.||++|++ .+|+||+|+|||||++|++.++|+.+|++||+||++++++.+.... ..
T Consensus 153 ~~~~g~~t~~~Ei~~q~~------~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~ 226 (403)
T PRK07334 153 AVIAGQGTVALEMLEDAP------DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGS 226 (403)
T ss_pred HHHHhHHHHHHHHHhcCC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCC
Confidence 889999999999999984 5899999999999999999999999999999999999987654321 12
Q ss_pred HHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 268 GLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 268 ~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.++++++.. ...|+++.|+|.+.+.++..++.+
T Consensus 227 ~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~ 270 (403)
T PRK07334 227 TIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEI 270 (403)
T ss_pred CccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 356666631 357999999999999999888764
No 46
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.4e-37 Score=298.68 Aligned_cols=232 Identities=19% Similarity=0.237 Sum_probs=183.2
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa 116 (315)
++.+++++|||++ ++.|+. |++||+|+|++|| +||||+|++.+++.+++++|.++||++ |+||||+++|++|
T Consensus 24 ~~~l~~g~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGSfKdR~a~~~l~~a~~~g~~~iv~a--SsGN~g~alA~~a 97 (353)
T PRK07409 24 VVTLGEGNTPLIP--APNLSELLGVEVYVKYEGLNP--TGSFKDRGMTMAVTKAKEEGAKAVICA--STGNTSASAAAYA 97 (353)
T ss_pred cccCCCCCCCEEE--chhhHHHhCCeEEEEecCCCC--ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHH
Confidence 6789999999999 788876 7899999999999 699999999999999999999999875 6799999999999
Q ss_pred HHcCCeEEEEecCCC-cccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 117 KYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~-~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
+.+|++|+||||+.. + ..|++.++.|||+|+.++. .|++. .+.++++.++.+ .++++ ..|+
T Consensus 98 ~~~G~~~~ivvP~~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~~------~~~a~~l~~~~~-~~~~~--~~n~ 159 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIA--------LGKLAQAVMYGAEIIQIDG-NFDDA------LEIVRELAEKYP-VTLVN--SVNP 159 (353)
T ss_pred HHcCCCEEEEEcCCCCc--------hhhHHHHHhcCCEEEEECC-CHHHH------HHHHHHHHHhcC-ceecC--CCCc
Confidence 999999999999873 2 2479999999999999986 46532 233445554432 34443 3589
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCC------CCeEEEEeccCCchhhHHH----
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDYFYDY---- 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~------~~rVigV~~~g~~~~~~~~---- 265 (315)
.+++||.+++.||++|+. ..+|+||+|+|||||++|++.++++..+ .+||+|||+.++..+...+
T Consensus 160 ~~~~g~~t~~~EI~~q~~-----~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~ 234 (353)
T PRK07409 160 YRIEGQKTAAFEIVDALG-----DAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKN 234 (353)
T ss_pred hhhhhHHHHHHHHHHHhC-----CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCC
Confidence 999999999999999985 3699999999999999999999987633 5899999999875442111
Q ss_pred HHHHHhhhcCC-------------CCCCCeEEecCCcccchHHHHHH
Q 021235 266 TQGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 266 i~~l~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
...+.++++.+ ...++++.|+|.+...++..+..
T Consensus 235 ~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~ 281 (353)
T PRK07409 235 PETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLAR 281 (353)
T ss_pred CcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 12233333321 12246889999888888776664
No 47
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=3.2e-37 Score=299.50 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=182.7
Q ss_pred CCCCCCCccccCCCCCCC--C--------CeEEEEeCCCCCCCCchhHHHHHHHHHHH-----HHHcCC-----------
Q 021235 42 LGHFPTPIHKWNLPNLPH--N--------TEVWLKRDDLSGMQLSGNKVRKLEFLMAD-----AVAQGA----------- 95 (315)
Q Consensus 42 ~~~~~TPL~~~~~~~L~~--g--------~~v~vKrEdl~~~~~gg~K~R~l~~ll~~-----a~~~G~----------- 95 (315)
+++++|||++ +++|++ | .+||+|+|++||. +||||+|++.+++.. +++.|.
T Consensus 48 ~~~~~TPLv~--~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~-tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~ 124 (404)
T cd06447 48 HGIIESPLLP--IPRMKQALEKLYHQPIKGRLLLKADSHLPI-SGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLA 124 (404)
T ss_pred CCccCCCcee--hHHHHHHhccccccCcCceEEEEecCCCCC-CCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhh
Confidence 4589999999 677654 3 7999999999983 499999999888864 555554
Q ss_pred ----------CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCccccc
Q 021235 96 ----------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKI 165 (315)
Q Consensus 96 ----------~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~ 165 (315)
.+||++ |+||||+++|++|+.+|++|+||||..++ ..|+..+|.|||+|+.++. .|++
T Consensus 125 ~~~~~~~~~~~~VV~a--SsGN~G~alA~~a~~~G~~~~IvvP~~~~--------~~K~~~ira~GAeVv~v~~-~~~~- 192 (404)
T cd06447 125 SEKFRKLFSQYSIAVG--STGNLGLSIGIMAAALGFKVTVHMSADAK--------QWKKDKLRSKGVTVVEYET-DYSK- 192 (404)
T ss_pred hhhhhhcccCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHCCCEEEEECC-CHHH-
Confidence 368865 67999999999999999999999999885 3589999999999999986 4543
Q ss_pred ChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCC---CCCCCeEEEeCCchhhHHHHHHHHh
Q 021235 166 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG---GVKFDDIVVACGSGGTIAGLSLGSW 242 (315)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~---~~~~D~ivv~vGtGGt~aGl~~~~k 242 (315)
..+ .++++.++.+..|+++. +.++....||.+++.||++|+...+. ...||+||+|+|+||+++|+++++|
T Consensus 193 ----a~~-~a~~la~~~~~~~~v~~-~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK 266 (404)
T cd06447 193 ----AVE-EGRKQAAADPMCYFVDD-ENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLK 266 (404)
T ss_pred ----HHH-HHHHHHHHCCCeEeCCC-CCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHH
Confidence 222 34455554334566654 44566788999999999999962100 0135689999999999999999999
Q ss_pred cC-CCCCeEEEEeccCCchhhHH----------------HHHHHHhhhcCC-----------CCCCCeEEecCCcccchH
Q 021235 243 LG-TLKAKVHAFSVCDDPDYFYD----------------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTF 294 (315)
Q Consensus 243 ~~-~~~~rVigV~~~g~~~~~~~----------------~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~ 294 (315)
+. .|+++||+|++.+++.+... ....+++|++.. ...|+++.|+|.+++..+
T Consensus 267 ~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~ 346 (404)
T cd06447 267 LIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLL 346 (404)
T ss_pred HhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHH
Confidence 86 78999999999987654211 023466666652 357999999999999998
Q ss_pred HHHHH
Q 021235 295 KNILM 299 (315)
Q Consensus 295 ~~~~~ 299 (315)
..+..
T Consensus 347 r~La~ 351 (404)
T cd06447 347 AMLKD 351 (404)
T ss_pred HHHHH
Confidence 88775
No 48
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=292.62 Aligned_cols=233 Identities=20% Similarity=0.201 Sum_probs=184.2
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHH-cCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~-~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++....++|||++ +++|++ |++||+|+|++|| +||||+|.+.+++.+..+ .+.++||+. |+||||+|+|++
T Consensus 13 ~~~~~i~~TPLv~--~~~l~~~~g~~i~~K~E~~np--tgS~KdR~a~~~~~~l~~~~~~~~vv~a--SsGN~g~alA~~ 86 (317)
T PRK06815 13 RLRPQVRVTPLEH--SPLLSQHTGCEVYLKCEHLQH--TGSFKFRGASNKLRLLNEAQRQQGVITA--SSGNHGQGVALA 86 (317)
T ss_pred HhhCCCCCCCccc--cHhHHHhhCCeEEEEecCCCC--CCCcHHHHHHHHHHhcchhhcCceEEEE--CCChHHHHHHHH
Confidence 5556679999999 788876 8899999999999 699999999988876432 234568864 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|++|||+..+ ..|+..++.+||+|+.++.. |++. ...++++.++.+..|+.|. .|+
T Consensus 87 a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~~------~~~a~~~~~~~~~~~~~~~--~~~ 149 (317)
T PRK06815 87 AKLAGIPVTVYAPEQAS--------AIKLDAIRALGAEVRLYGGD-ALNA------ELAARRAAEQQGKVYISPY--NDP 149 (317)
T ss_pred HHHhCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHHH------HHHHHHHHHhcCCEEecCC--CCh
Confidence 99999999999998874 35899999999999999863 5431 2334455554433444443 467
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----H------
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----Y------ 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----~------ 265 (315)
....||.+++.||++|++ .+|+||+|+||||+++|++.++++.++++||+||++.+++.+... +
T Consensus 150 ~~~~g~~t~a~Ei~~q~~------~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~ 223 (317)
T PRK06815 150 QVIAGQGTIGMELVEQQP------DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAE 223 (317)
T ss_pred hhhcchhHHHHHHHHhcC------CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCC
Confidence 777899999999999985 489999999999999999999999999999999999998765432 1
Q ss_pred HHHHHhhhcCC------------CCCCCeEEecCCcccchHHHHHHH
Q 021235 266 TQGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i~~l~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
.+.++++++.. ...++++.|+|.+.+.++..+...
T Consensus 224 ~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~ 270 (317)
T PRK06815 224 QPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAET 270 (317)
T ss_pred CCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 11255555321 246899999999999998888763
No 49
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=3.1e-37 Score=302.45 Aligned_cols=236 Identities=16% Similarity=0.142 Sum_probs=186.7
Q ss_pred CcccCCCCCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHH
Q 021235 38 HVFSLGHFPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 38 ~r~~~~~~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~ 114 (315)
.++++..++|||++ +++|++ | .+||+|+|++|| +||||+|++.+++.+|.+.|.++|++. |+||||+|+|+
T Consensus 81 ~~v~l~eG~TPLv~--~~~l~~~lG~~~l~~K~E~~nP--tGSfKdRga~~~v~~A~~~g~~~vv~a--SsGN~g~alA~ 154 (421)
T PRK07591 81 NPVDLGPGFTPLVK--ADRLARELGLKNLYIKDDSVNP--THSFKDRVVSVALTAARELGFTTVACA--STGNLANSVAA 154 (421)
T ss_pred CCCcCCCCCCcceE--hHHHHHHhCCCcEEEEeCCCCC--ccChHHHHHHHHHHHHHHcCCCEEEEe--CCCHHHHHHHH
Confidence 36889999999999 788875 6 499999999998 699999999999999999999998864 67999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
+|+++|++|+||||+..+ .+|+.+++.|||+|+.++. .|++ . .++++++.++.+..|+++. ..|
T Consensus 155 ~aa~~Gl~~~I~vP~~~~--------~~k~~~~~~~GA~Vi~v~g-~~d~-----a-~~~a~~~~~~~~~~~~~n~-~~~ 218 (421)
T PRK07591 155 HAARAGLDSCVFIPADLE--------AGKIVGTLVYGPTLVAVDG-NYDD-----V-NRLCSELANEHEGWGFVNI-NLR 218 (421)
T ss_pred HHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----H-HHHHHHHHHhcCCEEEecC-CCC
Confidence 999999999999999764 3589999999999999986 4653 2 2334444443323455543 346
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcC-------CCCCeEEEEeccCCchhhHH---
Q 021235 195 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFYD--- 264 (315)
Q Consensus 195 ~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~-------~~~~rVigV~~~g~~~~~~~--- 264 (315)
|...+|+.+++.||++|+. +..||+||+|+|+||+++|++.+|+++ ++.+||++||+++.......
T Consensus 219 p~~ieG~~Tia~Ei~eQl~----~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~ 294 (421)
T PRK07591 219 PYYAEGSKTLGYEVAEQLG----WRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKE 294 (421)
T ss_pred cccccchHHHHHHHHHHcC----CCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHc
Confidence 7778999999999999985 224999999999999999999999986 57899999999985443221
Q ss_pred --------HHHHHHhhhcCCC-------------CCCCeEEecCCcccchHHHHHH
Q 021235 265 --------YTQGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 265 --------~i~~l~~g~~~~~-------------~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
..+.+++++.... ...+++.|+|.++...+..+..
T Consensus 295 g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~ 350 (421)
T PRK07591 295 GRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLAR 350 (421)
T ss_pred CCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 1233444443211 2346999999998888877764
No 50
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=7.9e-37 Score=299.95 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=186.3
Q ss_pred CcCcccCCCCCCCccccCCCCCCC--C--------CeEEEEeCCCCCCCCchhHHHHHHHHHHH-----HHHcCC-----
Q 021235 36 PSHVFSLGHFPTPIHKWNLPNLPH--N--------TEVWLKRDDLSGMQLSGNKVRKLEFLMAD-----AVAQGA----- 95 (315)
Q Consensus 36 p~~r~~~~~~~TPL~~~~~~~L~~--g--------~~v~vKrEdl~~~~~gg~K~R~l~~ll~~-----a~~~G~----- 95 (315)
|.++..++.++|||++ ++.|++ | .+||+|+|++||. +||||+|++.+++.. +++.|.
T Consensus 65 ~~~~~~~~~~~TPL~~--~~~l~~~~g~~~~~~~~~~V~lK~E~~np~-tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~ 141 (441)
T PRK02991 65 PETAATGGIIESPLVA--IPAMQKALEKEYGQPISGRLLLKKDSHLPI-SGSIKARGGIYEVLKHAEKLALEAGLLTLDD 141 (441)
T ss_pred ccccccCCccCCCcee--hHHHHHHhcccccCCcCceEEEEEcCCCCC-cCChHHHHHHHHHHHhhHHHHHHhCCCCcCc
Confidence 3334456789999999 677754 4 6999999999983 499999999888764 445663
Q ss_pred ----------------CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 96 ----------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 96 ----------------~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.+||++ |+||||+|+|++|+.+|++|+||||+.++ ..|+..++.|||+|+.++.
T Consensus 142 ~~~~l~~~~~~~~~~~~~VV~a--SsGN~G~alA~aA~~~G~~~tIvvP~~a~--------~~K~~~ir~~GAeVi~~~~ 211 (441)
T PRK02991 142 DYSKLASPEFRQFFSQYSIAVG--STGNLGLSIGIMSAALGFKVTVHMSADAR--------QWKKDKLRSHGVTVVEYEG 211 (441)
T ss_pred chhhhcchhhhhhccCcEEEEE--CCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC
Confidence 357764 67999999999999999999999999875 3589999999999999986
Q ss_pred CcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCC--C-CCCCeEEEeCCchhhHHH
Q 021235 160 EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG--G-VKFDDIVVACGSGGTIAG 236 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~--~-~~~D~ivv~vGtGGt~aG 236 (315)
.|++. .+.++++.++.+..|+++. +.++..+.||.|++.||++|+...+. + ..||+||+|+|+||+++|
T Consensus 212 -~~~~a------~~~A~~la~~~~~~~~~~~-~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaG 283 (441)
T PRK02991 212 -DYGVA------VEEGRKAAESDPNCYFIDD-ENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGG 283 (441)
T ss_pred -CHHHH------HHHHHHHHHhcCCeEeCCC-CCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHH
Confidence 46542 2334455544334565543 35677789999999999999962100 0 136799999999999999
Q ss_pred HHHHHhcC-CCCCeEEEEeccCCchhhHH----------------HHHHHHhhhcCC-----------CCCCCeEEecCC
Q 021235 237 LSLGSWLG-TLKAKVHAFSVCDDPDYFYD----------------YTQGLLDGLNAG-----------VDSRDIVNIQNV 288 (315)
Q Consensus 237 l~~~~k~~-~~~~rVigV~~~g~~~~~~~----------------~i~~l~~g~~~~-----------~~~~dvv~v~e~ 288 (315)
++.++|+. .+++|||+||+.+++.+... ....++++++.. ...|+++.|+|.
T Consensus 284 ia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ 363 (441)
T PRK02991 284 VAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDE 363 (441)
T ss_pred HHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHH
Confidence 99999987 68899999999998654221 012456666652 257999999999
Q ss_pred cccchHHHHHHH
Q 021235 289 SVYMTFKNILMN 300 (315)
Q Consensus 289 ~~~~~~~~~~~~ 300 (315)
++..++..+..+
T Consensus 364 ei~~a~~~L~~~ 375 (441)
T PRK02991 364 TLYRLLGLLADT 375 (441)
T ss_pred HHHHHHHHHHHh
Confidence 999998887753
No 51
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=7.3e-37 Score=292.10 Aligned_cols=225 Identities=18% Similarity=0.191 Sum_probs=183.4
Q ss_pred cccCCCCCCCccccCCCCCCCCCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCC-EEEecCCchhHHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGAD-CIITIGGIQSNHCRAAAVAAK 117 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~-~vVt~g~s~GNhg~alA~aa~ 117 (315)
|+...+.+|||++ ++.| +||+|+|++|| +||||+|++.+++..+.+.|.. .||++ |+||||+|+|++|+
T Consensus 32 ~i~~~i~~TPL~~--~~~l----~v~lK~E~~np--tGSfK~RgA~~~l~~a~~~~~~~~VV~a--SsGN~G~alA~aa~ 101 (349)
T PRK08813 32 RLRRYLSPTPLHY--AERF----GVWLKLENLQR--TGSYKVRGALNALLAGLERGDERPVICA--SAGNHAQGVAWSAY 101 (349)
T ss_pred HHhCcCCCCCeEE--CCCC----cEEEEecCCCC--cCCCHHHHHHHHHHHHHHcCCCCeEEEE--CCCHHHHHHHHHHH
Confidence 7778889999999 5555 59999999999 6999999999999999988854 67764 67999999999999
Q ss_pred HcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhh
Q 021235 118 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIG 197 (315)
Q Consensus 118 ~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~ 197 (315)
.+|++|+||||...+ ..|+..++.|||+|+.++. .|++. .+.++++.++. ..|+++. +.|+..
T Consensus 102 ~~Gi~~~IvvP~~~~--------~~K~~~i~~~GAeVv~~g~-~~~~a------~~~a~~la~~~-g~~~v~~-~~np~~ 164 (349)
T PRK08813 102 RLGVQAITVMPHGAP--------QTKIAGVAHWGATVRQHGN-SYDEA------YAFARELADQN-GYRFLSA-FDDPDV 164 (349)
T ss_pred HcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHHH------HHHHHHHHHhc-CCEEcCc-cCChHH
Confidence 999999999999875 3589999999999999976 46542 23445565543 3566653 467889
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH---------HHHH
Q 021235 198 TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD---------YTQG 268 (315)
Q Consensus 198 ~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~---------~i~~ 268 (315)
.+||.|++.||++| .||+||+|+|+||+++|++.++|+ +.+||||||+++.+.+... ....
T Consensus 165 i~G~~Tig~EI~e~--------~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~t 234 (349)
T PRK08813 165 IAGQGTVGIELAAH--------APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVAT 234 (349)
T ss_pred HHHHHHHHHHHHcC--------CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCc
Confidence 99999999999876 279999999999999999999996 5799999999997654221 1235
Q ss_pred HHhhhcCC-----------CCCCCeEEecCCcccchHHHHHHH
Q 021235 269 LLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 269 l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
+++|++.. ...|+++.|+|.+++.++..|+.+
T Consensus 235 iadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~ 277 (349)
T PRK08813 235 LADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALE 277 (349)
T ss_pred eecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 66666641 257999999999999999888864
No 52
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=3.4e-37 Score=289.58 Aligned_cols=231 Identities=20% Similarity=0.225 Sum_probs=183.1
Q ss_pred ccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC-CCEEEecCCchhHHHHHHHHHH
Q 021235 40 FSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG-ADCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 40 ~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G-~~~vVt~g~s~GNhg~alA~aa 116 (315)
+...+++|||++ +++|+. |++||+|+|++|| +||||+|.+.+++.++++.| .++||++ |+||||+|+|++|
T Consensus 11 i~~~ig~TPl~~--~~~l~~~~g~~i~~K~E~~np--tgS~Kdr~a~~~l~~~~~~~~~~~iv~~--ssGN~g~alA~~a 84 (304)
T cd01562 11 IKPVVRRTPLLT--SPTLSELLGAEVYLKCENLQK--TGSFKIRGAYNKLLSLSEEERAKGVVAA--SAGNHAQGVAYAA 84 (304)
T ss_pred HhCcCCCCCccc--chhhHHHhCCeEEEEeccCCC--cCCcHHHhHHHHHHhcCHhhcCCcEEEE--CCCHHHHHHHHHH
Confidence 445679999999 788876 8899999999999 69999999999999988776 5678876 4599999999999
Q ss_pred HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchh
Q 021235 117 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI 196 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~ 196 (315)
+++|++|++|+|...+ ..|+.+++.+||+|+.++.. |++ . ...++++.++. ..|++ .++.|+.
T Consensus 85 ~~~G~~~~ivvp~~~~--------~~k~~~l~~~Ga~vi~~~~~-~~~-----~-~~~a~~la~~~-~~~~~-~~~~n~~ 147 (304)
T cd01562 85 KLLGIPATIVMPETAP--------AAKVDATRAYGAEVVLYGED-FDE-----A-EAKARELAEEE-GLTFI-HPFDDPD 147 (304)
T ss_pred HHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-HHH-----H-HHHHHHHHHhc-CCEEe-CCCCCcc
Confidence 9999999999998764 34799999999999999874 543 2 23345566554 33443 3345677
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHH----------H
Q 021235 197 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY----------T 266 (315)
Q Consensus 197 ~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~----------i 266 (315)
...||.+++.||++|+. .||+||+|+|||||++|++.++|..++++|||||++.+++.+.... .
T Consensus 148 ~~~g~~~~~~Ei~~q~~------~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~ 221 (304)
T cd01562 148 VIAGQGTIGLEILEQVP------DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEV 221 (304)
T ss_pred hhccHHHHHHHHHHhcC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCC
Confidence 78899999999999985 3999999999999999999999999999999999999876543210 1
Q ss_pred HHHHhhhcC-----------CCCCCCeEEecCCcccchHHHHHH
Q 021235 267 QGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 267 ~~l~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
..+..+++. ....++++.|+|.+...++..+..
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 265 (304)
T cd01562 222 DTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFE 265 (304)
T ss_pred CcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 223334332 124678999999988888877754
No 53
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=4.7e-37 Score=290.23 Aligned_cols=240 Identities=20% Similarity=0.154 Sum_probs=184.1
Q ss_pred CCChhhhcCCCCcCcccCCCCCCCccccCCCCCCC-CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCC
Q 021235 25 PPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH-NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGG 103 (315)
Q Consensus 25 ~p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~-g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~ 103 (315)
||++.+.....+ ++...+++|||++ ++.|+. +.+||+|+|++|| +||||+|++.+++.++.+ +.++||+.
T Consensus 4 ~~~~~~i~~a~~--~i~~~i~~TPl~~--~~~l~~~~~~i~~K~E~~np--tGS~K~R~a~~~~~~~~~-~~~~vv~a-- 74 (310)
T PRK08246 4 MITRSDVRAAAQ--RIAPHIRRTPVLE--ADGAGFGPAPVWLKLEHLQH--TGSFKARGAFNRLLAAPV-PAAGVVAA-- 74 (310)
T ss_pred CCCHHHHHHHHH--HHhCcCCCCCeee--ccccccCCCEEEEEECCCCC--CCCCHHHHHHHHHHhhcc-cCCeEEEe--
Confidence 445444444444 6777789999999 788876 6899999999999 699999999998887766 56788865
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCC
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGR 183 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (315)
|+||||+++|++|+++|++|+||||+..+ ..|+.+++.|||+|+.++. .|++ .++ .++++.++.
T Consensus 75 SsGN~g~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----~~~-~a~~~~~~~- 138 (310)
T PRK08246 75 SGGNAGLAVAYAAAALGVPATVFVPETAP--------PAKVARLRALGAEVVVVGA-EYAD-----ALE-AAQAFAAET- 138 (310)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHCCCEEEEeCC-CHHH-----HHH-HHHHHHHhc-
Confidence 56999999999999999999999998874 3479999999999999986 3543 223 233444432
Q ss_pred CcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH
Q 021235 184 RPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY 263 (315)
Q Consensus 184 ~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~ 263 (315)
..| .+.++.|+....||.+++.||++|+. .||+||+|+|||||++|++.+++. ++||+||++.+++.+..
T Consensus 139 g~~-~~~~~~n~~~i~g~~t~~~Ei~eq~~------~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~ 208 (310)
T PRK08246 139 GAL-LCHAYDQPEVLAGAGTLGLEIEEQAP------GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHA 208 (310)
T ss_pred CCE-eCCCCCChhhhcchHHHHHHHHHhcC------CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHH
Confidence 234 44456688889999999999999984 599999999999999999999974 48999999999876432
Q ss_pred H-----HHH----H-HHhhhcC-----------CCCCCCeEEecCCcccchHHHHHH
Q 021235 264 D-----YTQ----G-LLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 264 ~-----~i~----~-l~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
. .+. . ..++++. ....++++.|+|.+.+..+..+..
T Consensus 209 s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~ 265 (310)
T PRK08246 209 ALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWE 265 (310)
T ss_pred HHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 1 111 1 1112221 125789999999998888777654
No 54
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.3e-36 Score=297.43 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=186.6
Q ss_pred CCCcCcccCCCCCCCccccCCCCCCC----------CCeEEEEeCCCCCCCCchhHHHHHHHHHHH-----HHHcCC---
Q 021235 34 PIPSHVFSLGHFPTPIHKWNLPNLPH----------NTEVWLKRDDLSGMQLSGNKVRKLEFLMAD-----AVAQGA--- 95 (315)
Q Consensus 34 ~~p~~r~~~~~~~TPL~~~~~~~L~~----------g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~-----a~~~G~--- 95 (315)
.||...-.+++.+|||++ +++|++ +.+||+|+|++||. +||||+|++.+++.. |++.|.
T Consensus 58 ~fp~~~~~~~~~~TPL~~--~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~-tGSfKdRGA~~~i~~~~~~~A~~~G~l~~ 134 (431)
T TIGR02035 58 VFPETAATGGIIESPLVE--IFNMQKELEKKYQQEIPGRLLLKMDSHLPI-SGSIKARGGIYEVLKHAEELALEAGLLKL 134 (431)
T ss_pred hCccccccCCccCCCccc--hHHHHHHhhhcccCCcCceEEEEecccCCc-cCCcHHHHHHHHHHHhhHHHHHHcCCCCc
Confidence 355444456999999999 777653 46999999999983 599999999998864 666665
Q ss_pred ------------------CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 96 ------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 96 ------------------~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
.+||+. |+||||+++|++|+.+|++|+||||++++ ..|+..+|.|||+|+.+
T Consensus 135 ~~~~~~l~e~~~~~~~~~~~Vv~a--SsGN~G~slA~~Aa~lG~~~~IvmP~~a~--------~~K~~~ir~~GAeVv~~ 204 (431)
T TIGR02035 135 DDDYSILAEKKFKDFFSRYSIAVG--STGNLGLSIGIISAALGFQVTVHMSADAK--------QWKKDKLRSKGVTVVEY 204 (431)
T ss_pred CcchhhhcchhhhhcccCceEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEE
Confidence 356654 67999999999999999999999999885 35899999999999999
Q ss_pred cCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch-hhHHHHHHHHHHHHHHHhcCC---CCCCCCeEEEeCCchhh
Q 021235 158 SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS-IGTWGYIEAIKEIEQQLQTGT---GGVKFDDIVVACGSGGT 233 (315)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~-~~~~G~~t~a~EI~~Q~~~~~---~~~~~D~ivv~vGtGGt 233 (315)
+. .|++ .++ .++++.++.+..|++.. .|+ ....||.+++.||++|+.... +...||+|++++|+||+
T Consensus 205 ~~-~~~~-----a~~-~A~~la~~~~~~~~~d~--~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGl 275 (431)
T TIGR02035 205 ES-DYGV-----AVE-EGRKNADADPMCYFVDD--ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGG 275 (431)
T ss_pred CC-CHHH-----HHH-HHHHHHHhcCCeEECCC--CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHH
Confidence 87 4654 222 34455554334455432 332 335899999999999995210 00257899999999999
Q ss_pred HHHHHHHHhcC-CCCCeEEEEeccCCchhhHHH---------H-------HHHHhhhcCC-----------CCCCCeEEe
Q 021235 234 IAGLSLGSWLG-TLKAKVHAFSVCDDPDYFYDY---------T-------QGLLDGLNAG-----------VDSRDIVNI 285 (315)
Q Consensus 234 ~aGl~~~~k~~-~~~~rVigV~~~g~~~~~~~~---------i-------~~l~~g~~~~-----------~~~~dvv~v 285 (315)
++|++.++|+. ++++|||+||+.+++.+...- + ..+++|+++. ...|+++.|
T Consensus 276 i~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~V 355 (431)
T TIGR02035 276 PGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTV 355 (431)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEE
Confidence 99999999997 899999999999987543210 1 2456666652 257999999
Q ss_pred cCCcccchHHHHHHH
Q 021235 286 QNVSVYMTFKNILMN 300 (315)
Q Consensus 286 ~e~~~~~~~~~~~~~ 300 (315)
+|.+++..+..|+.+
T Consensus 356 sD~ei~~a~~~L~~~ 370 (431)
T TIGR02035 356 DDYTLYDLLRILAES 370 (431)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998888764
No 55
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.8e-36 Score=294.98 Aligned_cols=234 Identities=16% Similarity=0.111 Sum_probs=184.1
Q ss_pred cccCCCCCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
.++++.++|||++ +++|++ | .+||+|+|++|| +||||+|++.+++.+|+++|.++||+. |+||||+|+|++
T Consensus 72 ~vslgeG~TPL~~--~~~l~~~~G~~~l~~K~E~~nP--tGSfKdRga~~~i~~a~~~g~~~vv~a--SsGN~g~alA~~ 145 (394)
T PRK08197 72 IVSLGEGMTPLLP--LPRLGKALGIGRLWVKDEGLNP--TGSFKARGLAVGVSRAKELGVKHLAMP--TNGNAGAAWAAY 145 (394)
T ss_pred CCccCcCCCCceE--hHHHHHHhCCCcEEEEeCCCCC--CcCcHHhHHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHH
Confidence 4789999999999 777765 6 499999999999 799999999999999999999999964 679999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+++|++|+||||...+ ..|+.+++++||+|+.++. .|++ . .++++++.++. ..|++ .++.||
T Consensus 146 aa~~G~~~~v~vp~~~~--------~~k~~~~~~~GA~Vi~v~~-~~~~-----~-~~~a~~~~~~~-g~~~~-~~~~np 208 (394)
T PRK08197 146 AARAGIRATIFMPADAP--------EITRLECALAGAELYLVDG-LISD-----A-GKIVAEAVAEY-GWFDV-STLKEP 208 (394)
T ss_pred HHHcCCcEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----H-HHHHHHHHHhc-Ccccc-cCCCCc
Confidence 99999999999999874 3589999999999999986 3543 2 22333443332 24444 445688
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcC-------CCCCeEEEEeccCCchhhHH----
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFYD---- 264 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~-------~~~~rVigV~~~g~~~~~~~---- 264 (315)
...+||.+++.||++|+.. ..||+||+|+|+||+++|++++|+++ ++.+||++|++.++..+...
T Consensus 209 ~~ieG~~t~a~Ei~eQl~~----~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g 284 (394)
T PRK08197 209 YRIEGKKTMGLELAEQLGW----RLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEG 284 (394)
T ss_pred cchhcHHHHHHHHHHHcCC----CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcC
Confidence 8999999999999999852 35999999999999999999999986 48899999999987654321
Q ss_pred --------HHHHHHhhhcCCC-------------CCCCeEEecCCcccchHHHHHH
Q 021235 265 --------YTQGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 265 --------~i~~l~~g~~~~~-------------~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
....+++++.... ...+++.|+|.++..++..+..
T Consensus 285 ~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~ 340 (394)
T PRK08197 285 KEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAR 340 (394)
T ss_pred CCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHh
Confidence 0122333433211 2234688999888888777654
No 56
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=8.4e-36 Score=271.92 Aligned_cols=183 Identities=26% Similarity=0.278 Sum_probs=157.4
Q ss_pred CCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcC---CCEEEecCCchhHHHHHHHHHHHHcCC
Q 021235 47 TPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQG---ADCIITIGGIQSNHCRAAAVAAKYLNL 121 (315)
Q Consensus 47 TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G---~~~vVt~g~s~GNhg~alA~aa~~lGl 121 (315)
|||++ +++|++ +.+||+|+|++|| +||||+|++.+++..++++| .++||++ |+||||+|+|++|+++|+
T Consensus 1 TPl~~--~~~l~~~~~~~l~~K~e~~~p--tgS~K~R~a~~~l~~a~~~g~~~~~~vv~~--ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVR--LKRLSKLGGANIYLKLEFLNP--TGSFKDRGALNLILLAEEEGKLPKGVIIES--TGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeE--ccccccccCCEEEEEecccCC--cCCcHHHHHHHHHHHHHHcCCCCCCEEEEe--CCcHHHHHHHHHHHHcCC
Confidence 89998 788876 7899999999999 59999999999999999988 5777765 459999999999999999
Q ss_pred eEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHH
Q 021235 122 DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGY 201 (315)
Q Consensus 122 ~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~ 201 (315)
+|++|+|...+ ..|+++++.+||+|+.++.. |++ . .+.++++.++.++.|+++. +.|+.+.+||
T Consensus 75 ~~~v~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~-~~~-----~-~~~a~~~~~~~~~~~~~~~-~~n~~~~~g~ 138 (244)
T cd00640 75 KCTIVMPEGAS--------PEKVAQMRALGAEVVLVPGD-FDD-----A-IALAKELAEEDPGAYYVNQ-FDNPANIAGQ 138 (244)
T ss_pred CEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHH-----H-HHHHHHHHHhCCCCEecCC-CCCHHHHHHH
Confidence 99999998864 35899999999999999874 543 2 2344556655445677764 4789999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEec
Q 021235 202 IEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 255 (315)
Q Consensus 202 ~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~ 255 (315)
.+++.||.+|+.. ..+|+||+|+||||+++|++.+++..+|.+|||+|++
T Consensus 139 ~~~~~Ei~~q~~~----~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 139 GTIGLEILEQLGG----QKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred HHHHHHHHHHcCC----CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 9999999999862 2599999999999999999999999999999999999
No 57
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=5.6e-36 Score=286.97 Aligned_cols=225 Identities=16% Similarity=0.069 Sum_probs=179.5
Q ss_pred cccCCCCCCCccccCCCCCCCCCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 118 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~ 118 (315)
.+.++.+.|||++ + +.+||+|+|++|| +||||+|++..++.+|.+.|.++||+. |+||||+|+|++|++
T Consensus 57 ~~sl~eg~Tpl~~--~-----~~~l~~K~E~~nP--tGSfKdRga~~~i~~a~~~g~~~vv~a--SsGN~g~alA~~aa~ 125 (347)
T PRK08329 57 LPHLTPPITPTVK--R-----SIKVYFKLDYLQP--TGSFKDRGTYVTVAKLKEEGINEVVID--SSGNAALSLALYSLS 125 (347)
T ss_pred CCcCCCCCCcccc--C-----CCeEEEEeCCCCC--CcCCHHHHHHHHHHHHHHcCCCEEEEE--CCCcHHHHHHHHHHH
Confidence 3678999999998 3 3599999999999 699999999999999999999999976 569999999999999
Q ss_pred cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhH
Q 021235 119 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 198 (315)
Q Consensus 119 lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~ 198 (315)
+|++|+||||++.+ ..|+.+++.|||+|+.++.. |++ . .+.++++.++... +++. .+.||...
T Consensus 126 ~G~~~~v~vp~~~~--------~~k~~~~~~~GA~v~~v~~~-~~~-----~-~~~a~~l~~~~~~-~~~~-~~~np~~~ 188 (347)
T PRK08329 126 EGIKVHVFVSYNAS--------KEKISLLSRLGAELHFVEGD-RME-----V-HEEAVKFSKRNNI-PYVS-HWLNPYFL 188 (347)
T ss_pred cCCcEEEEECCCCh--------HHHHHHHHHcCCEEEEECCC-HHH-----H-HHHHHHHHHhcCC-eecc-CCCCchhh
Confidence 99999999999874 36899999999999999863 543 1 2334455554322 3333 34689999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCC------CCCeEEEEeccCCchhhHH--HHHHHH
Q 021235 199 WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT------LKAKVHAFSVCDDPDYFYD--YTQGLL 270 (315)
Q Consensus 199 ~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~------~~~rVigV~~~g~~~~~~~--~i~~l~ 270 (315)
+||.+++.||++|+. .||+||+|+|+||+++|++++++++. +.+||++|++.+....... ....++
T Consensus 189 eG~~t~~~Ei~eql~------~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a 262 (347)
T PRK08329 189 EGTKTIAYEIYEQIG------VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLA 262 (347)
T ss_pred ccchhHHHHHHHHcC------CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCcee
Confidence 999999999999984 59999999999999999999999863 5689999999986544321 223345
Q ss_pred hhhcCCC-------------CCCCeEEecCCcccchHHHH
Q 021235 271 DGLNAGV-------------DSRDIVNIQNVSVYMTFKNI 297 (315)
Q Consensus 271 ~g~~~~~-------------~~~dvv~v~e~~~~~~~~~~ 297 (315)
++++... ..++++.|+|.++...+..+
T Consensus 263 ~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l 302 (347)
T PRK08329 263 DGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWL 302 (347)
T ss_pred eeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence 5555421 23457899999999888765
No 58
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.5e-35 Score=282.86 Aligned_cols=223 Identities=15% Similarity=0.110 Sum_probs=176.0
Q ss_pred cccCCCCCCCccccCCCCCCCCCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 118 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~ 118 (315)
.+.+++++|||++ . .+||+|+|++|| +||||||.+..++.++.++|.++|++. |+||||.|+|++|++
T Consensus 51 ~vslgeG~TPLv~--~------~~l~~K~E~~nP--TGSfKDRga~~~i~~a~~~g~~~vv~a--SsGN~g~slA~~aa~ 118 (338)
T PRK06450 51 FISLGEGRTPLIK--K------GNIWFKLDFLNP--TGSYKDRGSVTLISYLAEKGIKQISED--SSGNAGASIAAYGAA 118 (338)
T ss_pred CCCCCCCCCCcee--c------CCEEEEecCCCC--cCCCHHHHHHHHHHHHHHcCCCEEEEE--CCcHHHHHHHHHHHH
Confidence 5789999999998 2 379999999999 799999999999999999999998875 669999999999999
Q ss_pred cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhH
Q 021235 119 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 198 (315)
Q Consensus 119 lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~ 198 (315)
+|++|+||||+..+ ..|+.+++.|||+|+.++. .|++. .++ .++. ..+++ .+..||...
T Consensus 119 ~G~~~~i~vP~~~~--------~~k~~~i~~~GA~vi~v~~-~~~~~------~~~----a~~~-g~~~~-~~~~np~~i 177 (338)
T PRK06450 119 AGIEVKIFVPETAS--------GGKLKQIESYGAEVVRVRG-SREDV------AKA----AENS-GYYYA-SHVLQPQFR 177 (338)
T ss_pred cCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHHH------HHH----HHhc-CeEec-cCCCCccHH
Confidence 99999999999875 3589999999999999986 35431 222 2221 23444 334589999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCC------CCeEEEEeccCCchhhHH--------
Q 021235 199 WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDYFYD-------- 264 (315)
Q Consensus 199 ~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~------~~rVigV~~~g~~~~~~~-------- 264 (315)
+||.+++.||++|+. +..||+||+|+|+||+++|++++|+++.+ .+|||+||+.+.......
T Consensus 178 eG~kTia~EI~eql~----~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~ 253 (338)
T PRK06450 178 DGIRTLAYEIAKDLD----WKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTP 253 (338)
T ss_pred HHHHHHHHHHHHHcC----CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCC
Confidence 999999999999985 23599999999999999999999998653 379999999986543211
Q ss_pred --HHHHHHhhhcCC--C----------CCCCeEEecCCcccchHHHHH
Q 021235 265 --YTQGLLDGLNAG--V----------DSRDIVNIQNVSVYMTFKNIL 298 (315)
Q Consensus 265 --~i~~l~~g~~~~--~----------~~~dvv~v~e~~~~~~~~~~~ 298 (315)
....+++++... . ..++++.|+|.++...+..+.
T Consensus 254 ~~~~~tia~~l~~~~p~~~~~~~~~i~~~g~~v~V~d~ei~~a~~~La 301 (338)
T PRK06450 254 PDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDNEIVEAWKELA 301 (338)
T ss_pred CCCCCcceeeeecCCCCCHHHHHHHHHhcCcEEEECHHHHHHHHHHHH
Confidence 112233333321 0 125899999999999887663
No 59
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.7e-36 Score=291.71 Aligned_cols=233 Identities=19% Similarity=0.218 Sum_probs=183.1
Q ss_pred cccCCCCCCCccccCCCCCCC--CC-eEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NT-EVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~-~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
+++++.++|||++ +++|++ |. +||+|+|++|| +||||+|++.+++.+++++|.++||+. |+||||+|+|++
T Consensus 60 ~v~l~~G~TPLv~--~~~l~~~~g~~~l~~K~E~~nP--TGSfKdRga~~~v~~a~~~g~~~vv~a--SsGN~g~alA~~ 133 (397)
T PRK06260 60 IVSLNEGGTPLYR--CPNLEKELGVKELYVKHEGANP--TGSFKDRGMTVGVTKALELGVKTVACA--STGNTSASLAAY 133 (397)
T ss_pred cccCCCCCCCeEE--chhhHHHhCCCcEEEEeCCCCC--CcCcHHHHHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHH
Confidence 6889999999999 788876 76 99999999999 699999999999999999999998864 679999999999
Q ss_pred HHHcCCeEEEEecCC-CcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 116 AKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 116 a~~lGl~~~ivvp~~-~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
|+++|++|+||||.. .+ ..|+.+++.|||+|+.++. .|++ . .+.++++.++. ..|+++ + .|
T Consensus 134 aa~~G~~~~i~vP~~~~~--------~~k~~~~~~~GA~vi~v~~-~~~~-----~-~~~a~~~~~~~-g~y~~~-~-~n 195 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVA--------LGKLAQALLHGAKVLEVDG-NFDD-----A-LDMVVELAKEG-KIYLLN-S-IN 195 (397)
T ss_pred HHHcCCcEEEEEeCCCcc--------HHHHHHHHhcCCEEEEECC-cHHH-----H-HHHHHHHHhhC-CEEeec-C-CC
Confidence 999999999999986 33 3578899999999999986 4653 2 22344454433 356554 3 38
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCC------CCCeEEEEeccCCchhhHHH---
Q 021235 195 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT------LKAKVHAFSVCDDPDYFYDY--- 265 (315)
Q Consensus 195 ~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~------~~~rVigV~~~g~~~~~~~~--- 265 (315)
+...+||.+++.||++|+. +..||+||+|+|+||+++|++.+|+++. ..+|||||++.++.......
T Consensus 196 p~~~~G~~t~a~Ei~eQl~----~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g 271 (397)
T PRK06260 196 PFRLEGQKTIGFEIADQLG----WEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKG 271 (397)
T ss_pred chhhcchhhHHHHHHHHhC----CCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcC
Confidence 9999999999999999995 2269999999999999999999999864 33699999999976532110
Q ss_pred ---------HHHHHhhhcC--C-----------CCCCCeEEecCCcccchHHHHHH
Q 021235 266 ---------TQGLLDGLNA--G-----------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 266 ---------i~~l~~g~~~--~-----------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
...+++++.. . ...++++.|+|.++..++..+..
T Consensus 272 ~~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~ 327 (397)
T PRK06260 272 KDEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLAR 327 (397)
T ss_pred CCcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
Confidence 1112222221 1 12256899999988888877765
No 60
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=7.4e-36 Score=290.84 Aligned_cols=235 Identities=17% Similarity=0.170 Sum_probs=177.4
Q ss_pred cCCCCCCCccccCCCCCCC--C-CeEEEEeCCCC-CCCCchhHHHHHHHHHHHHH--HcCC-------------------
Q 021235 41 SLGHFPTPIHKWNLPNLPH--N-TEVWLKRDDLS-GMQLSGNKVRKLEFLMADAV--AQGA------------------- 95 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~~L~~--g-~~v~vKrEdl~-~~~~gg~K~R~l~~ll~~a~--~~G~------------------- 95 (315)
.....+|||++ +++|++ | .+||+|+|+++ | +||||+|++.+.+..+. +.+.
T Consensus 39 ~~~~~~TPL~~--~~~l~~~~G~~~v~~K~E~~q~p--tgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (399)
T PRK08206 39 FPGYAPTPLVA--LPDLAAELGVGSILVKDESYRFG--LNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKL 114 (399)
T ss_pred CCCCCCCCCcc--hHHHHHHhCCCcEEEecccCcCC--CCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhc
Confidence 45778999999 788876 7 59999999985 8 79999999877766654 2222
Q ss_pred C--EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHH
Q 021235 96 D--CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNI 173 (315)
Q Consensus 96 ~--~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~ 173 (315)
+ +|| ++|+||||+|+|++|+.+|++|+||||+..+ ..|+..++.|||+|+.++. .|++ .++.
T Consensus 115 ~~~~vv--~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~--------~~k~~~i~~~GA~Vi~v~~-~~~~-----~~~~ 178 (399)
T PRK08206 115 GDITFA--TATDGNHGRGVAWAAQQLGQKAVIYMPKGSS--------EERVDAIRALGAECIITDG-NYDD-----SVRL 178 (399)
T ss_pred cCCEEE--EeCCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCC-CHHH-----HHHH
Confidence 1 355 4578999999999999999999999999875 2478899999999999996 4543 2233
Q ss_pred HHHHHHHhCCCcEEeCC----CCC--chhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCC--
Q 021235 174 LKEKLLKEGRRPYVIPV----GGS--NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT-- 245 (315)
Q Consensus 174 ~~~~l~~~~~~~y~ip~----g~~--n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~-- 245 (315)
+. ++.++. ..|+++. ++. ++...+||.+++.||++|+... +..||+||+|+|+|||++|++.++++.+
T Consensus 179 a~-~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~--~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~ 254 (399)
T PRK08206 179 AA-QEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEM--GVPPTHVFLQAGVGSLAGAVLGYFAEVYGE 254 (399)
T ss_pred HH-HHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhc--CCCCCEEEEcCCccHHHHHHHHHHHHHcCC
Confidence 33 333332 2455542 233 3677899999999999999621 1259999999999999999999999874
Q ss_pred CCCeEEEEeccCCchhhHHH-----------HHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHH
Q 021235 246 LKAKVHAFSVCDDPDYFYDY-----------TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 246 ~~~rVigV~~~g~~~~~~~~-----------i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
+.+||++||+.++..+...- ...++++++.. ...|+++.|+|.+++..+..|..
T Consensus 255 ~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~ 330 (399)
T PRK08206 255 QRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILAN 330 (399)
T ss_pred CCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhc
Confidence 47899999999987643210 02344555431 24699999999999999988874
No 61
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.4e-35 Score=287.10 Aligned_cols=192 Identities=17% Similarity=0.165 Sum_probs=161.9
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa 116 (315)
++.+..++|||++ ++ +++ |.+||+|+|++|| +||||+|++.+++.+|++.|.++||+. |+||||+|+|++|
T Consensus 59 ~v~l~~G~TPLv~--~~-~~~~~g~~l~~K~E~~nP--tGSfKdR~a~~~i~~a~~~g~~~vv~a--SsGN~g~alA~~a 131 (442)
T PRK05638 59 IISLGEGGTPLIR--AR-ISEKLGENVYIKDETRNP--TGSFRDRLATVAVSYGLPYAANGFIVA--SDGNAAASVAAYS 131 (442)
T ss_pred ccccCCCCCcEEc--cc-chHHhCCeEEEEeCCCCC--CCChHHHHHHHHHHHHHHcCCCEEEEe--CCChHHHHHHHHH
Confidence 5788999999999 53 544 7899999999999 799999999999999999999999874 6799999999999
Q ss_pred HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchh
Q 021235 117 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI 196 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~ 196 (315)
+++|++|+||||+..+ ..|+.+++.|||+|+.++. .|++ .++ .++++.++ ...|+++ ++.||.
T Consensus 132 a~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~vi~v~~-~~~~-----~~~-~a~~~~~~-~~~~~~~-~~~np~ 194 (442)
T PRK05638 132 ARAGKEAFVVVPRKVD--------KGKLIQMIAFGAKIIRYGE-SVDE-----AIE-YAEELARL-NGLYNVT-PEYNII 194 (442)
T ss_pred HHcCCCEEEEEeCCCC--------HHHHHHHHhcCcEEEEECC-CHHH-----HHH-HHHHHHHh-CCeEecC-CCCChh
Confidence 9999999999999874 3589999999999999986 4543 222 34445443 3456665 456899
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCC------CCeEEEEeccCCchh
Q 021235 197 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDY 261 (315)
Q Consensus 197 ~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~------~~rVigV~~~g~~~~ 261 (315)
..+||.+++.||++|+. ||+||+|+|+||+++|++.+|+++.+ .+||+||++++....
T Consensus 195 ~~eG~~t~a~Ei~eq~~-------pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~ 258 (442)
T PRK05638 195 GLEGQKTIAFELWEEIN-------PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPI 258 (442)
T ss_pred HhhhHHHHHHHHHHHHC-------cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHH
Confidence 99999999999999983 99999999999999999999998654 369999999876543
No 62
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2e-35 Score=280.86 Aligned_cols=232 Identities=16% Similarity=0.157 Sum_probs=182.4
Q ss_pred cccCCCCCCCccccCCCCCCC--CC-eEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NT-EVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~-~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
++.+..++|||++ +++|+. |. +||+|+|++|| +||||+|++.+++.++.++|..+||+. |+||||+|+|++
T Consensus 16 ~~~l~~g~TPl~~--~~~l~~~~g~~~i~~K~E~~np--tGSfKdR~a~~~l~~a~~~g~~~vv~a--SsGN~g~a~A~~ 89 (328)
T TIGR00260 16 LVDLGEGVTPLFR--SPALVANVGIKNLYVLELFHNP--TLSFKDRGMAVALTKALELGNDTVLCA--STGNTGAAAAAY 89 (328)
T ss_pred hhhhccCCccCcc--chHHHHhcCCccEEehhhccCC--chhhHhhhHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHH
Confidence 5778889999999 777765 66 99999999999 799999999999999999998888874 679999999999
Q ss_pred HHHcCCeEEEEecCC-CcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 116 AKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 116 a~~lGl~~~ivvp~~-~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
|+.+|++|++|||+. .+ ..|+..++.+||+|+.++. .|++. .+.++++.++.+ .| +.+..|
T Consensus 90 a~~~g~~~~v~~p~~~~s--------~~k~~~~~~~GA~Vi~~~~-~~~~~------~~~~~~~~~~~~-~~--~~~~~n 151 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKIS--------LGKLAQALGYNAEVVAIDG-NFDDA------QRLVKQLFGDKE-AL--GLNSVN 151 (328)
T ss_pred hccCCCcEEEEECCCCCC--------HHHHHHHHhcCcEEEEecC-CHHHH------HHHHHHHHhhcC-ee--ecccCC
Confidence 999999999999997 53 3589999999999999986 46532 233444444321 22 333445
Q ss_pred --hhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcC-------CCCCeEEEEeccCCchhhHHH
Q 021235 195 --SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFYDY 265 (315)
Q Consensus 195 --~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~-------~~~~rVigV~~~g~~~~~~~~ 265 (315)
+...+||.+++.||++|+.. ..+|+||+++||||+++|++.++++. .| +|++|++.+++......
T Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~~----~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~ 225 (328)
T TIGR00260 152 SIPYRLEGQKTYAFEAVEQLGW----EAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAF 225 (328)
T ss_pred CCCeEeeeehhHHHHHHHHhCC----CCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChHHHHH
Confidence 78889999999999999952 36999999999999999999999973 34 99999999985443221
Q ss_pred H-----------HHHHhhhcCC-------------CCCCCeEEecCCcccchHHHHHHH
Q 021235 266 T-----------QGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 266 i-----------~~l~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
. ..+.++++.. ...++++.|+|.+.+.++..+...
T Consensus 226 ~~~g~~~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 284 (328)
T TIGR00260 226 LESGQWEPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLARE 284 (328)
T ss_pred HcCCCcCcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHh
Confidence 1 2233333211 246789999999999998887653
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=3.9e-34 Score=277.68 Aligned_cols=202 Identities=19% Similarity=0.165 Sum_probs=153.2
Q ss_pred cCCCCCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHH
Q 021235 41 SLGHFPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAK 117 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~ 117 (315)
.++..+|||++ +++|++ | .+||+|+|++|| +||||+|.+..++..+.+.|.+++|+. +++||||+|+|++|+
T Consensus 45 ~~~~~~TPL~~--~~~l~~~~g~~~iy~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~vi~e-~ssGN~G~alA~~a~ 119 (385)
T TIGR00263 45 NYAGRPTPLTF--APNLTEALGGAKIYLKREDLNH--TGAHKINNALGQALLAKRMGKKRIIAE-TGAGQHGVATATAAA 119 (385)
T ss_pred HhCCCCCCcee--hHHHHHHhCCCeEEEEeCCCCC--CccchHHHHHHHHHHHHHcCCCEEEEE-cCcHHHHHHHHHHHH
Confidence 34557999999 788876 5 799999999999 699999999999988888888777753 356999999999999
Q ss_pred HcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC--cccccChHHHHHHHHHHHHHhCCCcEEeCCCCC--
Q 021235 118 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-- 193 (315)
Q Consensus 118 ~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~-- 193 (315)
++|++|+||||+.... ....|+++++.+||+|+.++.. .|+ +.++++++++.++.++.+++..+..
T Consensus 120 ~~Gl~~~Iv~p~~~~~-----~~~~~~~~~~~~GA~Vv~v~~~~~~~~-----~a~~~~~~~~~~~~~~~~y~~~~~~~~ 189 (385)
T TIGR00263 120 LLGLDCEVYMGAEDVE-----RQKPNVFRMELLGAKVIPVTSGSGTLK-----DAVNEALRDWVTSVDDTHYVLGSAVGP 189 (385)
T ss_pred HcCCCEEEEecCCccc-----ccchHHHHHHHcCCEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCceEEeCCcCCC
Confidence 9999999999975211 1135789999999999999752 232 2223444444444333444432221
Q ss_pred c--hhh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCc
Q 021235 194 N--SIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 194 n--~~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~ 259 (315)
+ +.. ..|+.+++.||++|+.+. .+..||+||+|+|||||++|++.++.. .|++|||||++.++.
T Consensus 190 ~p~~~~~~~~~~t~g~Ei~~Ql~~~-~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~ 256 (385)
T TIGR00263 190 HPFPTMVRDFQSVIGEEAKEQILEQ-EGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLG 256 (385)
T ss_pred CCchHHHHHHhhHHHHHHHHHHHhh-hCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCc
Confidence 2 222 367889999999998531 013589999999999999999998865 699999999999864
No 64
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=261.47 Aligned_cols=227 Identities=19% Similarity=0.198 Sum_probs=180.3
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHH-HcCCCEEEecCCchhHHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 115 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~-~~G~~~vVt~g~s~GNhg~alA~a 115 (315)
|++.-...||+.. ...|.+ |.+||+|||++|. +|+||+|++.+.+..+. ++..+.||++ |+||||+|+|++
T Consensus 18 rik~~ihkTpVlT--S~~ln~~~g~~vfFKcE~fQK--tGaFKfRGAlNav~~l~~ek~~kgvith--SSGNHaqAlala 91 (323)
T KOG1251|consen 18 RIKPFIHKTPVLT--SENLNEKVGRHVFFKCENFQK--TGAFKFRGALNAVSSLKAEKRAKGVITH--SSGNHAQALALA 91 (323)
T ss_pred HHHhhhccCceec--hhhHHHHhhhheEeehhhhhh--ccceehhhhHHHHHHhhHhhhcCceEee--cCCcHHHHHHHH
Confidence 7777778899988 667755 8999999999998 69999999988877765 5667889998 459999999999
Q ss_pred HHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 116 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 116 a~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
|+.+|++|+||||.++|. -|+..++.|||+|+++++ |.+. .+.+++++.++.+ .|.||++ .+|
T Consensus 92 Ak~~giPa~IVvP~~AP~--------~Kv~a~~~Yga~ii~~e~--~~~s-----RE~va~~ltee~g-~~~i~Py-~~p 154 (323)
T KOG1251|consen 92 AKILGIPATIVVPKDAPI--------CKVAATRGYGANIIFCEP--TVES-----RESVAKDLTEETG-YYLIHPY-NHP 154 (323)
T ss_pred HHhcCCCeEEEecCCChH--------HHHHHHHhcCceEEEecC--ccch-----HHHHHHHHHHhcC-cEEeCCC-CCc
Confidence 999999999999999864 379999999999999986 3331 1456667766543 4555543 234
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH----------H
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 265 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~----------~ 265 (315)
....|+.|++.|+.+|.+ .+|++|+|+|+||+++|++.+.+.+.|+++|++|++++....... .
T Consensus 155 ~vIaGqgTiA~ElleqVg------~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~t 228 (323)
T KOG1251|consen 155 SVIAGQGTIALELLEQVG------EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDT 228 (323)
T ss_pred ceeeccchHHHHHHHhhC------ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCC
Confidence 444555699999999995 599999999999999999999999999999999999876543322 2
Q ss_pred HHHHHhhhcCC-----------CCCCCeEEecCCcccchH
Q 021235 266 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTF 294 (315)
Q Consensus 266 i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~ 294 (315)
-+.++||.-.. ..+|||+.|+|.++-..+
T Consensus 229 p~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~l 268 (323)
T KOG1251|consen 229 PKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEAL 268 (323)
T ss_pred chhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHH
Confidence 24567766552 368999999998665443
No 65
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=2.4e-34 Score=278.00 Aligned_cols=233 Identities=17% Similarity=0.154 Sum_probs=179.7
Q ss_pred CCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHc-----------------------CCCEE
Q 021235 45 FPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQ-----------------------GADCI 98 (315)
Q Consensus 45 ~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~-----------------------G~~~v 98 (315)
.+|||++ ++.|++ | .+||+|+|++|++ +||||+|++.+.+..+.+. |..+|
T Consensus 21 ~~TPL~~--~~~l~~~~g~~~v~~K~E~~~~~-tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (376)
T TIGR01747 21 RPTPLCA--LDHLANLLGLKKILVKDESKRFG-LNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATF 97 (376)
T ss_pred CCCCCcc--hHHHHHHhCCCcEEEeeCCCCCC-CCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEE
Confidence 7899999 788866 7 4999999999853 6899999998888776442 35678
Q ss_pred EecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHH
Q 021235 99 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKL 178 (315)
Q Consensus 99 Vt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l 178 (315)
|+. |+||||+++|++|+.+|++|+||||+..+ ..|+..++.|||+|+.++. .|++. .+.++++
T Consensus 98 v~a--SsGN~g~a~A~~Aa~~G~~~~I~vP~~~~--------~~k~~~i~~~GAeVi~v~~-~~~~a------~~~a~~~ 160 (376)
T TIGR01747 98 ATA--TDGNHGRGVAWAAQQLGQKAVVYMPKGSA--------QERVENILNLGAECTITDM-NYDDT------VRLAMQM 160 (376)
T ss_pred EEE--CccHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHHH------HHHHHHH
Confidence 865 67999999999999999999999999875 3589999999999999986 46542 2223344
Q ss_pred HHhCCCcEEeCC----CC--CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCC-CC-CeE
Q 021235 179 LKEGRRPYVIPV----GG--SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT-LK-AKV 250 (315)
Q Consensus 179 ~~~~~~~y~ip~----g~--~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~-~~-~rV 250 (315)
.++. ..|+++. ++ .++..++||.+++.||++|+... .+..||+||+|+|+||+++|++.++++.. ++ ++|
T Consensus 161 ~~~~-g~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~-~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~v 238 (376)
T TIGR01747 161 AQQH-GWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREM-GSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHS 238 (376)
T ss_pred HHhc-CcEEeccccccccccCCchHHHHHHHHHHHHHHHhhcc-CCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEE
Confidence 4432 2566652 23 33667899999999999999621 02369999999999999999999997653 43 699
Q ss_pred EEEeccCCchhhHHH-------------HHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHH
Q 021235 251 HAFSVCDDPDYFYDY-------------TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 251 igV~~~g~~~~~~~~-------------i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
++|++.+++.+.... ...++++++.. ...+++|.|+|..++..+..|..
T Consensus 239 i~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~ 311 (376)
T TIGR01747 239 IVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGA 311 (376)
T ss_pred EEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhc
Confidence 999999988764331 23466666642 25789999999999988877664
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=3.7e-34 Score=277.56 Aligned_cols=214 Identities=19% Similarity=0.196 Sum_probs=159.5
Q ss_pred CChhhhcCCCCcCcccCCCCCCCccccCCCCCCC---CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecC
Q 021235 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH---NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIG 102 (315)
Q Consensus 26 p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~---g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g 102 (315)
|.+..++..+-+. +.-.+|||.+ +++|++ |.+||+||||+|| +||+|+|.+...+..|++.|.+.+|+.
T Consensus 41 ~~f~~~~~~~~~~---~~grpTPL~~--~~~Ls~~~gg~~IylK~Edlnp--tGS~K~r~al~~~l~A~~~Gk~~vIae- 112 (397)
T PRK04346 41 PEFQAELDYLLKN---YVGRPTPLYF--AERLSEHLGGAKIYLKREDLNH--TGAHKINNVLGQALLAKRMGKKRIIAE- 112 (397)
T ss_pred HHHHHHHHHHHHH---hcCCCCCceE--hHHHHHHcCCCeEEEEECCCCC--ccchHHHHHHHHHHHHHHcCCCeEEEe-
Confidence 4555555443321 3445899999 788876 5799999999999 699999999999988999998888763
Q ss_pred CchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC--cccccChHHHHHHHHHHHHH
Q 021235 103 GIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 103 ~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~ 180 (315)
.++||||+|+|++|+++|++|+||||+.... ....|+.+|+++||+|+.|+.+ .+. +.+.++.+.+.+
T Consensus 113 tgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~-----rq~~nv~~m~~lGA~Vv~v~~g~~~l~-----da~~ea~~~~~~ 182 (397)
T PRK04346 113 TGAGQHGVATATAAALLGLECVIYMGAEDVE-----RQALNVFRMKLLGAEVVPVTSGSRTLK-----DAVNEALRDWVT 182 (397)
T ss_pred cCcHHHHHHHHHHHHHcCCcEEEEecCCchh-----hhhhHHHHHHHCCCEEEEECCCCCCHH-----HHHHHHHHHHHH
Confidence 3569999999999999999999999985311 1135899999999999999853 222 222333433443
Q ss_pred hCC-CcEEeCCC-CCch--hh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEec
Q 021235 181 EGR-RPYVIPVG-GSNS--IG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 255 (315)
Q Consensus 181 ~~~-~~y~ip~g-~~n~--~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~ 255 (315)
+.. ..|+++.. +.+| .. ..|+.+++.||.+|+.+.. +..||+||+|+|+||+++|++.+|+. .+++||||||+
T Consensus 183 ~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~-g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~ 260 (397)
T PRK04346 183 NVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKE-GRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEA 260 (397)
T ss_pred hCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhh-CCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEec
Confidence 322 34554321 2233 22 3588899999999985321 24699999999999999999999975 78999999999
Q ss_pred cCCc
Q 021235 256 CDDP 259 (315)
Q Consensus 256 ~g~~ 259 (315)
.++.
T Consensus 261 ~G~~ 264 (397)
T PRK04346 261 AGKG 264 (397)
T ss_pred CCCc
Confidence 9863
No 67
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.2e-34 Score=278.38 Aligned_cols=254 Identities=18% Similarity=0.195 Sum_probs=180.2
Q ss_pred CChhhhcCCCCcCcccCCCCCCCccccCCCCCCC---CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecC
Q 021235 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH---NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIG 102 (315)
Q Consensus 26 p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~---g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g 102 (315)
|.|.+++..+-+ .+.-.+|||++ +++|++ |.+||+||||+|| +||+|+|.+...+..|++.|.+.+|+.
T Consensus 45 ~~f~~~~~~~~~---~~~g~pTPL~~--~~~Ls~~~Gg~~IylK~Edlnp--tGS~K~r~al~~~l~A~~~G~~~vI~e- 116 (402)
T PRK13028 45 PDFIAELRYLLK---HYVGRPTPLYH--AKRLSEELGGAQIYLKREDLNH--TGAHKINNCLGQALLAKRMGKKRLIAE- 116 (402)
T ss_pred HHHHHHHHHHHH---HhCCCCCCeee--hHHhHhhcCCCeEEEEECCCCC--CcchHHHHHHHHHHHHHHcCCCeEEEe-
Confidence 445555544321 24446899999 788877 5799999999999 699999999999988999998877753
Q ss_pred CchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC--cccccChHHHHHHHHHHHHH
Q 021235 103 GIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 103 ~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~ 180 (315)
+++||||+|+|++|+++|++|+||||+..+. ....|+.+|+++||+|+.|+.+ .++ +.++.+.+.+.+
T Consensus 117 tgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~-----~q~~nv~~mr~~GAeVi~v~~g~~~~~-----~a~~~a~~~~~~ 186 (402)
T PRK13028 117 TGAGQHGVATATAAALFGLECEIYMGEVDIE-----RQHPNVFRMKLLGAEVVPVTRGGRTLK-----EAVDSAFEDYLK 186 (402)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEECCCcch-----hhHHHHHHHHHcCCEEEEEcCCCCCHH-----HHHHHHHHHHHH
Confidence 3569999999999999999999999986431 1135899999999999999852 233 222333333343
Q ss_pred h-CCCcEEeCCC-C--CchhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEec
Q 021235 181 E-GRRPYVIPVG-G--SNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 255 (315)
Q Consensus 181 ~-~~~~y~ip~g-~--~n~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~ 255 (315)
+ ....|+++.. + .++... +|+.+++.||.+|+.++. +..||+||+|+|+||+++|++.+|++ .+++|||||++
T Consensus 187 ~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~-g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~ 264 (402)
T PRK13028 187 DPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMT-GRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEP 264 (402)
T ss_pred hcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhh-CCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEec
Confidence 3 2234554322 1 223333 578899999999985311 24699999999999999999999986 48999999999
Q ss_pred cC--------CchhhH-H--------------------HHHHHHhhhcC-----------CCCCCCeEEecCCcccchHH
Q 021235 256 CD--------DPDYFY-D--------------------YTQGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFK 295 (315)
Q Consensus 256 ~g--------~~~~~~-~--------------------~i~~l~~g~~~-----------~~~~~dvv~v~e~~~~~~~~ 295 (315)
.+ +..... . ....+.+++.. +...++++.|+|.+....+.
T Consensus 265 ~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~ 344 (402)
T PRK13028 265 AGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFF 344 (402)
T ss_pred CCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHH
Confidence 88 332211 0 01223333322 12346899999998888877
Q ss_pred HHHH
Q 021235 296 NILM 299 (315)
Q Consensus 296 ~~~~ 299 (315)
.|..
T Consensus 345 ~La~ 348 (402)
T PRK13028 345 LLSR 348 (402)
T ss_pred HHHH
Confidence 7664
No 68
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=6.2e-34 Score=274.60 Aligned_cols=242 Identities=17% Similarity=0.144 Sum_probs=175.7
Q ss_pred CCCCCCccccCCCCCCC---CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHc
Q 021235 43 GHFPTPIHKWNLPNLPH---NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL 119 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~---g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~l 119 (315)
...+|||++ +++|++ +.+||+|+|++|| +||||+|.+..++..+.++|++++|+.+ |+||||+|+|++|+++
T Consensus 31 ~~~~TPL~~--l~~l~~~~g~~~l~~K~E~~np--tgS~K~R~a~~~~~~a~~~g~~~vv~~~-ssGN~g~alA~~a~~~ 105 (365)
T cd06446 31 VGRPTPLYR--AKRLSEYLGGAKIYLKREDLNH--TGAHKINNALGQALLAKRMGKKRVIAET-GAGQHGVATATACALF 105 (365)
T ss_pred CCCCCCcee--hHHHHHhhCCceEEEEeccCCC--ccchhHHHHHHHHHHHHHcCCCeEEEec-CchHHHHHHHHHHHHh
Confidence 346899999 788876 5799999999999 6899999999999989999998888743 5599999999999999
Q ss_pred CCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhC-CCcEEeCCC-CCch--
Q 021235 120 NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYVIPVG-GSNS-- 195 (315)
Q Consensus 120 Gl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~-~~~y~ip~g-~~n~-- 195 (315)
|++|+||||+..+. ....|+.+++++||+|+.++.. ++. ..+.+..+++.+.++. ...|++... ++++
T Consensus 106 G~~~~ivvp~~~~~-----~~~~~~~~~~~~GAeV~~~~~~-~~~--~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 106 GLECEIYMGAVDVE-----RQPLNVFRMELLGAEVVPVPSG-SGT--LKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred CCCeEEEEcCCccc-----cccchHHHHHHCCCEEEEeCCC-CCc--HHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 99999999986431 1135889999999999999853 210 1122223333333332 234443211 1122
Q ss_pred -hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHH--------
Q 021235 196 -IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT-------- 266 (315)
Q Consensus 196 -~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i-------- 266 (315)
....||.+++.||++|+...+ +..||+||+|+|||||++|++.+++. .+++|||||++.+++.+...+.
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~-~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~ 255 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKE-GELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTA 255 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCc
Confidence 236788899999999996311 13699999999999999999998887 4699999999998766532100
Q ss_pred ---------------------HHHHhhhcC-----------CCCCCCeEEecCCcccchHHHHHH
Q 021235 267 ---------------------QGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 267 ---------------------~~l~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
..++++++. ....|+++.|+|.++...+..+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~ 320 (365)
T cd06446 256 GVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLAR 320 (365)
T ss_pred ceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHH
Confidence 112223331 124578999999998888877765
No 69
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=9.3e-34 Score=275.39 Aligned_cols=203 Identities=19% Similarity=0.139 Sum_probs=153.5
Q ss_pred cccCCC-CCCCccccCCCCCCC--------CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHH
Q 021235 39 VFSLGH-FPTPIHKWNLPNLPH--------NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHC 109 (315)
Q Consensus 39 r~~~~~-~~TPL~~~~~~~L~~--------g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg 109 (315)
++...+ .+|||++ +++|++ |++||+||||+|| +||||+|.+...+..|++.|.+++|+.+ ++||||
T Consensus 58 ~l~~~vGr~TPL~~--~~~Ls~~~g~~~~~g~~IylK~E~lnp--tGS~K~R~a~~~~l~A~~~g~~~vIaes-gaGNhG 132 (410)
T PLN02618 58 ILKDYVGRETPLYF--AERLTEHYKRADGEGPEIYLKREDLNH--TGAHKINNAVAQALLAKRLGKKRIIAET-GAGQHG 132 (410)
T ss_pred HHHHhcCCCCceeE--hhhHHHHhccccCCCCEEEEEeCCCCC--ccchHHHHHHHHHHHHHHcCCCEEEEEc-CcHHHH
Confidence 344455 4999999 788875 4899999999999 6999999998888888889988888653 459999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC--cccccChHHHHHHHHHHHHHhCCCcEE
Q 021235 110 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLKEGRRPYV 187 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~~~~~~y~ 187 (315)
+|+|++|+++|++|+||||+.... ....|+.+|++|||+|+.|+.+ .+++ .+.++.+++.++....++
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~-----~~~~nv~~mr~lGA~Vi~v~~g~~~~~d-----A~~ea~~~~~~~~~~~~y 202 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDME-----RQALNVFRMRLLGAEVRPVHSGTATLKD-----ATSEAIRDWVTNVETTHY 202 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchh-----hhhhhHHHHHHCCCEEEEEeCCCCCHHH-----HHHHHHHHHHhccCCCEE
Confidence 999999999999999999985321 0135899999999999999532 2322 222333344443223444
Q ss_pred eCCC--CCch---hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCC
Q 021235 188 IPVG--GSNS---IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 258 (315)
Q Consensus 188 ip~g--~~n~---~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~ 258 (315)
+... +++| ...+++.+++.||.+|+.+.. +..||+||+|+|+||+++|++.+|+. .+++|||||++.|+
T Consensus 203 i~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~-g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 203 ILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKW-GGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred EecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHh-CCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 5322 1222 234777899999999974311 24699999999999999999999975 69999999999986
No 70
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=7.1e-34 Score=276.39 Aligned_cols=233 Identities=17% Similarity=0.113 Sum_probs=175.2
Q ss_pred CCCCccccCCCCCCC--C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHH--cC---------------------CCEE
Q 021235 45 FPTPIHKWNLPNLPH--N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVA--QG---------------------ADCI 98 (315)
Q Consensus 45 ~~TPL~~~~~~~L~~--g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~--~G---------------------~~~v 98 (315)
.+|||++ ++.|++ | .+||+|+|++|++ +||||+|++.+.+..+.+ .| ..+|
T Consensus 40 ~~TPL~~--~~~L~~~~g~~~v~lK~E~~q~~-tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 40 QPTPLAE--LDNLAKHLGVGSILVKDESYRFG-LNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred cCCCCcc--hHHHHHHhCCCcEEEeeCCCCCC-cCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 7899999 788876 7 5999999999853 699999998888876422 22 2367
Q ss_pred EecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHH
Q 021235 99 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKL 178 (315)
Q Consensus 99 Vt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l 178 (315)
|+. |+||||+++|++|+++|++|+||||+..+ ..|+..++.|||+|+.++. .|++ . .+.++++
T Consensus 117 v~a--SsGN~g~alA~~aa~~Gi~~~IvvP~~~~--------~~K~~~ir~~GAeVi~~~~-~~~~-----a-~~~a~~~ 179 (396)
T TIGR03528 117 VTA--TDGNHGRGVAWAANQLGQKSVVYMPKGSA--------QIRLENIRAEGAECTITDL-NYDD-----A-VRLAWKM 179 (396)
T ss_pred EEE--CccHHHHHHHHHHHHcCCCEEEEEeCCCc--------HHHHHHHHhcCCEEEEECC-CHHH-----H-HHHHHHH
Confidence 764 67999999999999999999999999875 3589999999999999986 4553 2 2234444
Q ss_pred HHhCCCcEEeCC----CCCc--hhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhc-CCCC-CeE
Q 021235 179 LKEGRRPYVIPV----GGSN--SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-GTLK-AKV 250 (315)
Q Consensus 179 ~~~~~~~y~ip~----g~~n--~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~-~~~~-~rV 250 (315)
.++. ..|++.+ ++.| +..+.||.+++.||++|+...+ +..||+||+|+|+||+++|++.++++ ..++ .||
T Consensus 180 a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~-~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~v 257 (396)
T TIGR03528 180 AQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQG-VEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPIT 257 (396)
T ss_pred HHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcC-CCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEE
Confidence 4432 3455532 3333 6667899999999999996321 13699999999999999999998854 3444 499
Q ss_pred EEEeccCCchhhHH-------------HHHHHHhhhcCC-----------CCCCCeEEecCCcccchHHHHHH
Q 021235 251 HAFSVCDDPDYFYD-------------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 251 igV~~~g~~~~~~~-------------~i~~l~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
++||+.+.+.+... ....++++++.. ...|+++.|+|.++...+..+..
T Consensus 258 i~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~ 330 (396)
T TIGR03528 258 VIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGN 330 (396)
T ss_pred EEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhc
Confidence 99999987765432 123466666531 25799999999999988877754
No 71
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2.3e-34 Score=269.55 Aligned_cols=234 Identities=25% Similarity=0.321 Sum_probs=175.7
Q ss_pred cCCCCCCCccccCCC--CCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHH
Q 021235 41 SLGHFPTPIHKWNLP--NLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 116 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~--~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa 116 (315)
.+++++|||++ ++ .+++ +.+||+|||++|| +||||+|++.+++.+++++|.++|+. +|+||||+|+|++|
T Consensus 2 ~~~~~~TPl~~--~~~~~~~~~~~~~i~~K~E~~~p--tgs~K~R~a~~~l~~a~~~~~~~vv~--assGN~g~a~A~~a 75 (306)
T PF00291_consen 2 SLGIGPTPLVR--LPSRLLSELGGANIYLKREDLNP--TGSFKDRGAYYLLSRAKEKGGRTVVG--ASSGNHGRALAYAA 75 (306)
T ss_dssp GGGSSSS-EEE--EHEHHHHHCTTSEEEEEEGGGST--TSBTHHHHHHHHHHHHHHTTTSEEEE--ESSSHHHHHHHHHH
T ss_pred cCCCcCCCEEE--CccccchhccCCeEEEEECCCCC--cCCcccccchhhhhhccccccceeee--eccCCceehhhhhh
Confidence 46789999999 44 2222 7899999999997 79999999999999999999898874 57799999999999
Q ss_pred HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHH----HHHhCCCcEEeCCCC
Q 021235 117 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEK----LLKEGRRPYVIPVGG 192 (315)
Q Consensus 117 ~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~----l~~~~~~~y~ip~g~ 192 (315)
+.+|++|++|+|...+ ..|+.+++.+||+|+.+... +++. .+.+.+.+++ +... ... +..+
T Consensus 76 ~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~--~~~-~~~~- 140 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVS--------PEKLKQMRALGAEVILVPGD-VEGA--FDDAQELAKERAELLSPF--NGE-LNQY- 140 (306)
T ss_dssp HHHTCEEEEEEETTSH--------HHHHHHHHHTTCEEEEESST-HHHH--HHHHHHHHHHHHHHHHHS--TTE-ESTT-
T ss_pred hhccccceeeeccccc--------cccccceeeecceEEEcccc-cccc--cccccccccccccccccc--ccc-cCcc-
Confidence 9999999999999864 35899999999999988763 3211 1111222221 2211 112 3333
Q ss_pred CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhc--CCCCCeEEEEeccCCchhhHHHH----
Q 021235 193 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL--GTLKAKVHAFSVCDDPDYFYDYT---- 266 (315)
Q Consensus 193 ~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~--~~~~~rVigV~~~g~~~~~~~~i---- 266 (315)
.++....||.+++.||.+|+.. .++|+||+|+|||||++|++.+++. . |++||+||++.+++.+....-
T Consensus 141 ~~~~~~~g~~~~~~Ei~~q~~~----~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~ 215 (306)
T PF00291_consen 141 NNPNVIAGYATIGLEIYEQLGK----PDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKP 215 (306)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTT----ESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSC
T ss_pred cchhhhhhhhhcchhccccccc----ccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCcccccccccccc
Confidence 6888999999999999999951 2345599999999999999999999 7 899999999988765431111
Q ss_pred -----HHHHhhhcCCC-------------CCCCeEEecCCcccchHHHHHHH
Q 021235 267 -----QGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNILMN 300 (315)
Q Consensus 267 -----~~l~~g~~~~~-------------~~~dvv~v~e~~~~~~~~~~~~~ 300 (315)
...+.+++... ..++++.|+|.+.+.++..+...
T Consensus 216 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 267 (306)
T PF00291_consen 216 IRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAER 267 (306)
T ss_dssp EHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHH
T ss_pred ccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 12333555422 23456899999999988887764
No 72
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=6.9e-33 Score=270.86 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=157.9
Q ss_pred cccCCCCCCCccccCCCCCCC--C--CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--N--TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAV 114 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g--~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~ 114 (315)
++.+..++|||++ +++|++ | ++||+|+|++|| +||||+|.+..++..+.+.|.+++|+.. ++||||+|+|+
T Consensus 61 ~~~l~g~pTPL~r--~~~L~~~lg~~~~Iy~K~E~~nP--tGS~K~R~A~~~~~~a~~~G~~~~vtet-ssGN~G~alA~ 135 (419)
T TIGR01415 61 RYAQIGRPTPLIR--AKGLEELLGTPARIYYKYESVSP--TGSHKINTAIAQAYYAKIEGAKRLVTET-GAGQWGSALSL 135 (419)
T ss_pred HHHhcCCCCCeEE--ccchhhhhCCCceEEEEECCCCC--CCCcHHHHHHHHHHHHHHcCCCeEEEec-CchHHHHHHHH
Confidence 3455657999999 788876 4 699999999999 6999999999999999999999988753 45999999999
Q ss_pred HHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChH-------------HHHHHHHHHHHHh
Q 021235 115 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV-------------TLTNILKEKLLKE 181 (315)
Q Consensus 115 aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~-------------~~~~~~~~~l~~~ 181 (315)
+|+.+|++|+||||...+..+ ..++.++++|||+|+.++.. +++.... ..++.+.+...++
T Consensus 136 aaa~~Gl~~~V~mp~~s~~~k-----~~k~~~m~~~GA~Vi~~~~~-~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~ 209 (419)
T TIGR01415 136 AGALFGLECKVFMVRVSFNQK-----PYRKYLMELYGAEVIPSPSE-FTEFGREVLKEDPDHPGSLGIAISEAIEYALSD 209 (419)
T ss_pred HHHHcCCcEEEEEeCCCcccC-----HHHHHHHHHcCCEEEEECCc-hhhHHHHhhhcccccccchHHHHHHHHHHHHhC
Confidence 999999999999998553211 24689999999999999863 4432110 0123334333333
Q ss_pred CCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhc---CC-CCCeEEEEeccC
Q 021235 182 GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL---GT-LKAKVHAFSVCD 257 (315)
Q Consensus 182 ~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~---~~-~~~rVigV~~~g 257 (315)
+...|+. .+..|+. ..|+.+++.||++|+... +..||+||+++|+||+++|++.+|.. .+ +++|||+||+++
T Consensus 210 ~~~~y~~-~~~~n~~-~~h~~~ig~Ei~~Ql~~~--g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~ 285 (419)
T TIGR01415 210 EDTKYSL-GSVLNHV-LLHQTVIGLEAKKQMEEA--GEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKA 285 (419)
T ss_pred CCCEEEe-CCCCcHH-HHHHHHHHHHHHHHHHhc--CCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 3344544 3334443 347779999999999631 23699999999999999999988732 23 589999999998
Q ss_pred Cchhh
Q 021235 258 DPDYF 262 (315)
Q Consensus 258 ~~~~~ 262 (315)
.+.+.
T Consensus 286 ~~~l~ 290 (419)
T TIGR01415 286 CPTLT 290 (419)
T ss_pred Chhhh
Confidence 76543
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=7.1e-33 Score=283.01 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=168.0
Q ss_pred CChhhhcCCCCcCcccCCCC-CCCccccCCCCCCC------C--CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCC
Q 021235 26 PSWASHLAPIPSHVFSLGHF-PTPIHKWNLPNLPH------N--TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGAD 96 (315)
Q Consensus 26 p~~~~~l~~~p~~r~~~~~~-~TPL~~~~~~~L~~------g--~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~ 96 (315)
|.|..++..+-+ ..++ ||||++ +++|++ | .+||+||||+|| +||||+|.+..++..|++.|.+
T Consensus 309 ~~f~~e~~~~~~----~~iGrpTPL~~--~~~Ls~~l~~~~G~g~~IylK~E~lNp--TGS~KdR~Al~~i~~A~~~G~~ 380 (695)
T PRK13802 309 PEFHKELATLNQ----RYVGRPSPLTE--APRFAERVKEKTGLDARVFLKREDLNH--TGAHKINNALGQALLVKRMGKT 380 (695)
T ss_pred HHHHHHHHHHHH----hcCCCCCceeE--chhhhhhhHhhcCCCceEEEEEccCCC--cCCcHHHHHHHHHHHHHHcCCC
Confidence 445555544432 2245 999999 677652 3 799999999999 6999999999999999999987
Q ss_pred EEE-ecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHH
Q 021235 97 CII-TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 175 (315)
Q Consensus 97 ~vV-t~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~ 175 (315)
.+| ++ ++||||+|+|++|+++|++|+||||+..... ...|+.+|++|||+|+.++.+.. ...+.+.+++
T Consensus 381 ~~Ivet--ssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~-----~~~nv~~mr~lGAeVi~v~~g~~---~l~~Ai~ea~ 450 (695)
T PRK13802 381 RVIAET--GAGQHGVATATVCAMLGLKCRIYMGQIDARR-----QALNVARMRMLGAEVVEVTLGDR---ILKDAINEAL 450 (695)
T ss_pred CEEEEE--CcHHHHHHHHHHHHHcCCCEEEEEeCCcccc-----cHHHHHHHHHcCCEEEEECCCCC---cHHHHHHHHH
Confidence 544 44 4599999999999999999999999864211 14689999999999999984321 1112223344
Q ss_pred HHHHHhCC-CcEEeCCC-CCchh---hHHHHHHHHHHHHHHHhcCCCC-CCCCeEEEeCCchhhHHHHHHHHhcCCCCCe
Q 021235 176 EKLLKEGR-RPYVIPVG-GSNSI---GTWGYIEAIKEIEQQLQTGTGG-VKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 249 (315)
Q Consensus 176 ~~l~~~~~-~~y~ip~g-~~n~~---~~~G~~t~a~EI~~Q~~~~~~~-~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~r 249 (315)
+++.++.+ ..|+++.. +.+|. ...|+.++|.||++|+.+.. + ..||+||+|+||||+++|++.+|++ .+++|
T Consensus 451 ~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~-g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vk 528 (695)
T PRK13802 451 RDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWY-GIDHPDAICACVGGGSNAIGVMNAFLD-DERVN 528 (695)
T ss_pred HHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEcCCchHHHHHHHHHHHh-CCCce
Confidence 44444322 34555543 23333 34788899999999996310 1 2699999999999999999999976 68999
Q ss_pred EEEEeccCCchhhHHHHHHHHhhhcC
Q 021235 250 VHAFSVCDDPDYFYDYTQGLLDGLNA 275 (315)
Q Consensus 250 VigV~~~g~~~~~~~~i~~l~~g~~~ 275 (315)
||||++.+.......+...+.++.|.
T Consensus 529 ligVE~~g~g~~~g~h~~~~~~g~g~ 554 (695)
T PRK13802 529 LYGYEAGGNGPESGKHAIRFAPGTGE 554 (695)
T ss_pred EEEEEecCCCccccchhhhhhhccCC
Confidence 99999999765555666666665443
No 74
>PLN02569 threonine synthase
Probab=100.00 E-value=1.3e-32 Score=273.11 Aligned_cols=231 Identities=15% Similarity=0.114 Sum_probs=178.0
Q ss_pred cccCCCCCCCccccCCCCCCC---C-CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC-----CEEEecCCchhHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH---N-TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHC 109 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~---g-~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~-----~~vVt~g~s~GNhg 109 (315)
.+.++.++|||++ +++|.+ | .+||+|+|.+|| +||||||++..++..+.+.|. ..|++. |+||||
T Consensus 126 ~vsl~eG~TPLv~--~~~l~~~~~G~~~l~~K~E~~nP--TGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~A--SSGN~G 199 (484)
T PLN02569 126 IVSLFEGNSNLFW--AERLGKEFLGMNDLWVKHCGISH--TGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCA--STGDTS 199 (484)
T ss_pred ceecCCCCCceeE--hhhhhHhhcCCccEEEEECCCCC--CcCHHHHHHHHHHHHHHHhhhccCCccEEEEe--CCcHHH
Confidence 3789999999999 787754 4 389999999999 799999999999999888665 456754 679999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeC
Q 021235 110 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIP 189 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip 189 (315)
.|+|++|+.+|++|+||||+.... ..|+.+++.|||+|+.++. .|++. .++++++.++. ..|+++
T Consensus 200 aAlAayaa~~Gl~~~I~vP~~~~~-------~~k~~qi~a~GA~Vi~v~g-~~d~a------~~~a~e~~~~~-~~~~~n 264 (484)
T PLN02569 200 AALSAYCAAAGIPSIVFLPADKIS-------IAQLVQPIANGALVLSIDT-DFDGC------MRLIREVTAEL-PIYLAN 264 (484)
T ss_pred HHHHHHHHhcCCeEEEEEcCCCCC-------HHHHHHHHhcCCEEEEECC-CHHHH------HHHHHHHHHHc-CCEecC
Confidence 999999999999999999986321 3589999999999999987 47642 23344444432 256555
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcC------CCCCeEEEEeccCCchhhH
Q 021235 190 VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TLKAKVHAFSVCDDPDYFY 263 (315)
Q Consensus 190 ~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~------~~~~rVigV~~~g~~~~~~ 263 (315)
. . |+...+||.+++.||++|+. +..||+||+|+|+||+++|++++|+++ .+..||++||++++.....
T Consensus 265 ~-~-Np~~ieG~kT~a~EI~eQl~----~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~ 338 (484)
T PLN02569 265 S-L-NSLRLEGQKTAAIEILQQFD----WEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYR 338 (484)
T ss_pred C-C-CcchhHhHHHHHHHHHHHcC----CCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHH
Confidence 3 3 89999999999999999985 234999999999999999999999975 2456999999999754321
Q ss_pred HH------------HHHHHhhhcCCC-------------CCCCeEEecCCcccchHHH
Q 021235 264 DY------------TQGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKN 296 (315)
Q Consensus 264 ~~------------i~~l~~g~~~~~-------------~~~dvv~v~e~~~~~~~~~ 296 (315)
.. ...++++++... ..+.++.|+|.++..++..
T Consensus 339 a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~ 396 (484)
T PLN02569 339 AYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE 396 (484)
T ss_pred HHHcCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 10 122444544321 1233699999988888776
No 75
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=9.3e-32 Score=263.37 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=155.1
Q ss_pred CCCCCCccccCCCCCCC--C--CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHH
Q 021235 43 GHFPTPIHKWNLPNLPH--N--TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 118 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~--g--~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~ 118 (315)
..++|||++ +++|++ | .+||+|+|++|| +||||+|++..++..+.++|.+++++.. ++||||+|+|++|++
T Consensus 74 ~~~~TPL~~--~~~L~~~lg~~~~Iy~K~E~~nP--tGS~K~R~A~~~a~~a~~~G~~~~vtet-gsGN~G~alA~aaa~ 148 (427)
T PRK12391 74 LWRPTPLIR--ARRLEKALGTPAKIYYKYEGVSP--TGSHKPNTAVAQAYYNKKEGIKRLTTET-GAGQWGSALALACAL 148 (427)
T ss_pred ccCCCCeeE--chhhHhhhCCCceEEEEEcCCCC--CCChHHHHHHHHHHHHHHCCCCEEEEcc-CchHHHHHHHHHHHH
Confidence 347999999 788865 4 699999999999 6999999999999899999998888753 459999999999999
Q ss_pred cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccCh-------------HHHHHHHHHHHHHhCCCc
Q 021235 119 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGS-------------VTLTNILKEKLLKEGRRP 185 (315)
Q Consensus 119 lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 185 (315)
+|++|+||||......+ ..+..++|.|||+|+.++.. +++.+. ...+..+++...+.+...
T Consensus 149 ~Gl~~~V~mp~~s~~~k-----~~r~~~mr~~GA~Vi~~~~~-~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~ 222 (427)
T PRK12391 149 FGLECTVFMVRVSYEQK-----PYRRSLMETYGAEVIPSPSD-LTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTK 222 (427)
T ss_pred cCCcEEEEEecCCcccC-----HHHHHHHHHCCCEEEEECCc-hhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcE
Confidence 99999999997432211 24688999999999998753 332111 012333343333333334
Q ss_pred EEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHH---hcCC-CCCeEEEEeccCCchh
Q 021235 186 YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGS---WLGT-LKAKVHAFSVCDDPDY 261 (315)
Q Consensus 186 y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~---k~~~-~~~rVigV~~~g~~~~ 261 (315)
|+++.. .|. ...||.+++.||.+|+... +..||+||+|+|+||+++|++.++ +..+ +++|||||++.+++..
T Consensus 223 y~~~s~-~~~-~~~~~~~ig~Ei~~Ql~~~--g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l 298 (427)
T PRK12391 223 YALGSV-LNH-VLLHQTVIGLEAKKQLELA--GEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTL 298 (427)
T ss_pred EEcCCC-CcH-HHhhHHHHHHHHHHHHHhc--CCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhh
Confidence 554432 222 3457888999999999632 346999999999999999999977 3345 8899999999988654
Q ss_pred h
Q 021235 262 F 262 (315)
Q Consensus 262 ~ 262 (315)
.
T Consensus 299 ~ 299 (427)
T PRK12391 299 T 299 (427)
T ss_pred c
Confidence 3
No 76
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.5e-32 Score=277.23 Aligned_cols=215 Identities=17% Similarity=0.164 Sum_probs=158.6
Q ss_pred CChhhhcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCC
Q 021235 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGG 103 (315)
Q Consensus 26 p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~ 103 (315)
|.+.++|..+-+ .+...||||++ +++|++ |.+||+||||+|| +||||+|.+...+..|++.|.+++|+..
T Consensus 254 ~~~~~~~~~~~~---~~~grpTPL~~--~~~Ls~~~G~~IylK~E~lnp--tGS~K~r~al~~~~~a~~~g~~~vi~e~- 325 (610)
T PRK13803 254 NEFQKTFKRLLQ---NYAGRPTPLTE--AKRLSDIYGARIYLKREDLNH--TGSHKINNALGQALLAKRMGKTRIIAET- 325 (610)
T ss_pred HHHHHHHHHHHH---HhCCCCCccee--HHHHHHhhCCEEEEEeCCCCC--cccHHHHHHHHHHHHHHHcCCCEEEEec-
Confidence 444445433321 23446999999 788876 8999999999999 6999999998888888889988887643
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCC
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGR 183 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (315)
++||||+|+|++|+++|++|+||||..... ....|+.+|+++||+|+.|+.+. +. ..+.+.++.+++..+.+
T Consensus 326 gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~-----~~~~nv~~m~~~GA~Vi~v~~~~-~~--~~~a~~~a~~~~~~~~~ 397 (610)
T PRK13803 326 GAGQHGVATATACALFGLKCTIFMGEEDIK-----RQALNVERMKLLGANVIPVLSGS-KT--LKDAVNEAIRDWVASVP 397 (610)
T ss_pred ChHHHHHHHHHHHHHcCCcEEEEEeCCccc-----chhhHHHHHHHCCCEEEEECCCC-CC--HHHHHHHHHHHHHHhCC
Confidence 459999999999999999999999976421 11358999999999999998532 11 11222333444422223
Q ss_pred CcEEeCCC--CCc--hhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCC
Q 021235 184 RPYVIPVG--GSN--SIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 258 (315)
Q Consensus 184 ~~y~ip~g--~~n--~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~ 258 (315)
+.++++.. +.+ +... .|+.+++.||.+|+.+. .+..||+||+|+||||+++|++.+|+. ++++||||||+.++
T Consensus 398 ~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~-~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 398 DTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQ-TGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred CcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHh-hCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 34444322 122 3333 47888999999998531 124699999999999999999999964 78999999999985
No 77
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.98 E-value=9.1e-33 Score=255.90 Aligned_cols=225 Identities=20% Similarity=0.135 Sum_probs=176.1
Q ss_pred cCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC-----CEEEecCCchhHHHHHHH
Q 021235 41 SLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHCRAAA 113 (315)
Q Consensus 41 ~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~-----~~vVt~g~s~GNhg~alA 113 (315)
...+++|||+. +..+.. .++|++|+|.+|| .||.|+|-+..|+.+|++.|. ++|| ++++||+|.++|
T Consensus 47 ~~liG~TPlv~--ln~i~~g~~~~i~~K~E~~~p--~~SvKdRia~sMi~~Ae~~G~i~pg~stli--EpTSGNtGigLA 120 (362)
T KOG1252|consen 47 RDLIGNTPLVK--LNKIAGGCVARIAAKLEYMNP--GGSVKDRIAWSMIEDAEKKGLITPGKSTLI--EPTSGNTGIGLA 120 (362)
T ss_pred HHHhCCCceEE--eccccCCccceEEEEeeecCC--cccHHHHHHHHHHHHHHHcCCccCCceEEE--ecCCCchHHHHH
Confidence 35679999999 677755 4699999999999 699999999999999999884 3455 568899999999
Q ss_pred HHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCCC
Q 021235 114 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 192 (315)
Q Consensus 114 ~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 192 (315)
+.|+..|+||+++||+..+ .+|...+++|||+|++++.. .++ . .+..-..++++.++-++.| +.+++
T Consensus 121 ~~~a~~Gyk~i~tmP~~ms--------~Ek~~~l~a~Gaeii~tp~a~~~~--~-~e~ai~~a~~l~~~~pna~-~l~Qf 188 (362)
T KOG1252|consen 121 YMAALRGYKCIITMPEKMS--------KEKRILLRALGAEIILTPPAAGMK--G-PESAIGKAEELLNKTPNAY-ILDQF 188 (362)
T ss_pred HHHHHcCceEEEEechhhh--------HHHHHHHHHcCCEEEecChHHccC--C-hHHHHHHHHHHHHhCCChH-HHHHh
Confidence 9999999999999999885 35799999999999999853 122 1 2333445667777777776 44555
Q ss_pred Cchhh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHH---H
Q 021235 193 SNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQ---G 268 (315)
Q Consensus 193 ~n~~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~---~ 268 (315)
.||-+ ..+|.+++.||++|+. .++|.+|.++|||||++|+.+++|+.+++++|++||+..+..+-...-. -
T Consensus 189 ~np~Np~~hy~ttg~EI~~q~~-----g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~ 263 (362)
T KOG1252|consen 189 HNPGNPLAHYETTGPEIWRQLD-----GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFH 263 (362)
T ss_pred cCCCCcccccccccHHHHHHhc-----CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCcc
Confidence 55433 2578899999999995 5899999999999999999999999999999999999988654321111 3
Q ss_pred HHhhhcCCC--------CCCCeEEecCC
Q 021235 269 LLDGLNAGV--------DSRDIVNIQNV 288 (315)
Q Consensus 269 l~~g~~~~~--------~~~dvv~v~e~ 288 (315)
.++|+|.++ .+|+++.+++.
T Consensus 264 ~I~GIGyg~~p~~ld~~~vd~~~~~~~d 291 (362)
T KOG1252|consen 264 KIQGIGYGFIPTTLDTKLVDEVLKVSSD 291 (362)
T ss_pred ceeccccCcCccccchHHHHHHHHhCCH
Confidence 455666532 34555555544
No 78
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=234.72 Aligned_cols=232 Identities=16% Similarity=0.133 Sum_probs=175.8
Q ss_pred cccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCC---CEEEecCCchhHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGA---DCIITIGGIQSNHCRAAA 113 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~---~~vVt~g~s~GNhg~alA 113 (315)
-+...+++|||++ ...|++ ||+|+.|+|.+|| .||.|||.+.++++.|++.|. ...|+ +|+.||+|+++|
T Consensus 42 Gv~~~IGnTplir--i~sLs~aTGcnIlaK~Ef~NP--ggS~KDRvAl~iir~Aee~GkL~~gg~v~-EGtaGsTgIslA 116 (391)
T KOG1481|consen 42 GVEGAIGNTPLIR--INSLSNATGCNILAKAEFLNP--GGSVKDRVALYIIRTAEEKGKLVRGGTVV-EGTAGSTGISLA 116 (391)
T ss_pred hhHHhhCCCceEE--eeccccccccchhhhhhccCC--CCChhhhhHHHHHHHHHHcCCcccCceEE-ecCCCccchhHH
Confidence 3446779999999 788988 9999999999999 799999999999999999885 23443 568899999999
Q ss_pred HHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccC-hHHHHHHHHHHHHHh--CCCcEEeCC
Q 021235 114 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG-SVTLTNILKEKLLKE--GRRPYVIPV 190 (315)
Q Consensus 114 ~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~-~~~~~~~~~~~l~~~--~~~~y~ip~ 190 (315)
.+|+.+|++|+|+||.+.+ .+|.+.++.+||+|..|....+.+.+ .....++.++++.++ +.+.|+ ..
T Consensus 117 ~v~~a~Gyk~~I~mPddqs--------~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~f-Ad 187 (391)
T KOG1481|consen 117 HVARALGYKCHIYMPDDQS--------QEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWF-AD 187 (391)
T ss_pred HhhhhcCcceEEECCChHH--------HHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccch-hh
Confidence 9999999999999999875 35899999999999999864332211 111122333333332 222333 34
Q ss_pred CCCchhhH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCC-CeEEEEeccCCchh-------
Q 021235 191 GGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK-AKVHAFSVCDDPDY------- 261 (315)
Q Consensus 191 g~~n~~~~-~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~-~rVigV~~~g~~~~------- 261 (315)
+..|+.++ .+|.+++.|||.|.. +++|++++++|||||++|+.+++|+..+. +.+.-.++-|+..|
T Consensus 188 QFeN~AN~~aHyetTGPEIw~Qtk-----GniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GV 262 (391)
T KOG1481|consen 188 QFENVANWLAHYETTGPEIWHQTK-----GNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGV 262 (391)
T ss_pred hhcCHHHHHHHhcCcCcHHHHhhc-----CCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhh
Confidence 55677766 457889999999996 58999999999999999999999998764 78888888888432
Q ss_pred --h---------HHHHHHHHhhhcCC----------CCCCCeEEecCCc
Q 021235 262 --F---------YDYTQGLLDGLNAG----------VDSRDIVNIQNVS 289 (315)
Q Consensus 262 --~---------~~~i~~l~~g~~~~----------~~~~dvv~v~e~~ 289 (315)
. ..+++.+..|+|.. ...||-..|.|.+
T Consensus 263 my~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deq 311 (391)
T KOG1481|consen 263 MYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQ 311 (391)
T ss_pred hhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHH
Confidence 1 33556677777761 2356666666653
No 79
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.97 E-value=2.1e-29 Score=245.20 Aligned_cols=230 Identities=13% Similarity=0.033 Sum_probs=172.8
Q ss_pred CCCCCCCccccCCCCCCC--CC-eEEE-------EeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHH
Q 021235 42 LGHFPTPIHKWNLPNLPH--NT-EVWL-------KRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRA 111 (315)
Q Consensus 42 ~~~~~TPL~~~~~~~L~~--g~-~v~v-------KrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~a 111 (315)
+..+.|||.+ .+.|++ |+ +||+ |+|++|| +||||+|++..++.++.+.|.+.||+. |+||||+|
T Consensus 58 ~~~g~tpl~~--~~~L~~~lG~~~v~~K~e~~~~K~E~~np--TGSFKdRga~~~i~~a~~~g~~~Vv~a--SsGN~g~a 131 (398)
T TIGR03844 58 RTRGGPVTYK--SEGLARELGLSDLYITFSGYWPERGAFMR--TCSFKELEALPTMQRLKERGGKTLVVA--SAGNTGRA 131 (398)
T ss_pred CCCCCCceee--hHHHHHHhCCCeEEEEecCcccchhccCC--ccccHHHHHHHHHHHHHHcCCCEEEEE--CCCHHHHH
Confidence 4556789988 678766 77 9999 6666999 799999999999999999998888875 66999999
Q ss_pred HHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCC
Q 021235 112 AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVG 191 (315)
Q Consensus 112 lA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 191 (315)
+|++|+++|++|+||||...+. . +....+.+||+|+.++. .|+++ .+.++++.++. . ++.+.+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~-------~-~~~~~~~~ga~vv~v~g-~~d~a------~~~a~~~a~~~-g-~~~~~~ 194 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSAD-------R-LWTTEPASSVLLVTVDG-DYTDA------IALADRIATLP-G-FVPEGG 194 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHH-------H-HHHHhhCCcEEEEECCC-CHHHH------HHHHHHHHHhC-C-ccccCC
Confidence 9999999999999999987531 1 22234789999999886 46542 22344444432 2 344454
Q ss_pred CCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcC-------CCCCeEEEEeccCCchhhHH
Q 021235 192 GSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFYD 264 (315)
Q Consensus 192 ~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~-------~~~~rVigV~~~g~~~~~~~ 264 (315)
..|+...+|+.|++.||++|++ ..||+||+|+|+|+...|++.+++++ ..-.|+++||+++.+.....
T Consensus 195 ~~~p~~ieG~~Ti~~Ei~eql~-----~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a 269 (398)
T TIGR03844 195 ARNVARRDGMGTVMLDAAVTIG-----SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNA 269 (398)
T ss_pred CCCHHHHhhHHHHHHHHHHHcC-----CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHH
Confidence 5589999999999999999985 24899999999999899999998873 12358899999997654311
Q ss_pred H-----H---------------HHHHhhhcCC---------------CCCCCeEEecCCcccchHHHHHH
Q 021235 265 Y-----T---------------QGLLDGLNAG---------------VDSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 265 ~-----i---------------~~l~~g~~~~---------------~~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
. . +.+++++... ...+++|.|+|.++...+..|..
T Consensus 270 ~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~ 339 (398)
T TIGR03844 270 WQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEE 339 (398)
T ss_pred HHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 0 0 2344444221 13468999999999988887654
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.90 E-value=2.3e-23 Score=191.84 Aligned_cols=225 Identities=19% Similarity=0.198 Sum_probs=164.0
Q ss_pred CChhhhcCCCCcCcccCCCCCCCccccCCCCCCC--CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCC
Q 021235 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGG 103 (315)
Q Consensus 26 p~~~~~l~~~p~~r~~~~~~~TPL~~~~~~~L~~--g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~ 103 (315)
|.|.++|..+-+. ..-+||||.. ..+|++ |++||+||||||+ +|++|+..+..-..-|++.|.+.||...|
T Consensus 39 ~~F~~el~~~l~~---Y~GRptpLy~--a~~Lt~~~gakiyLKREDL~H--tGAHKiNN~lGQ~LLAkrMGK~riIAETG 111 (396)
T COG0133 39 PEFQAELDYLLKD---YAGRPTPLYF--AERLTEHLGAKIYLKREDLNH--TGAHKINNALGQALLAKRMGKTRIIAETG 111 (396)
T ss_pred HHHHHHHHHHHHH---hCCCCChhHH--HHHHHHhhCceEEEehhhhcc--cchhhHHHHHHHHHHHHHhCCceEEeecC
Confidence 4555555443321 4558999998 789988 8999999999999 69999998877777788999999996555
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCC
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGR 183 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (315)
+ |-||.|.|.+|+++|++|+|||-...-. + ..-|+..|+.+||+|+.|..+.-. ..+.+.++.+.+..+-.
T Consensus 112 A-GQHGVAtAta~A~fgl~C~iYMGa~Dv~----R-Q~~NVfRM~LlGA~V~pV~sGs~T---LKDA~neAlRdWvtn~~ 182 (396)
T COG0133 112 A-GQHGVATATAAALFGLECVIYMGAEDVE----R-QALNVFRMRLLGAEVVPVTSGSGT---LKDAINEALRDWVTNVE 182 (396)
T ss_pred C-CcccHHHHHHHHHhCCceEEEecchhhh----h-cccchhhhhhcCceEEEeccCCch---HHHHHHHHHHHHHhccc
Confidence 3 8999999999999999999999764321 1 135899999999999999865311 12233333333443322
Q ss_pred Cc-EEeC-CCCC--chhhHHHHHH-HHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCC
Q 021235 184 RP-YVIP-VGGS--NSIGTWGYIE-AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 258 (315)
Q Consensus 184 ~~-y~ip-~g~~--n~~~~~G~~t-~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~ 258 (315)
.. |++- .-+. .|..+.-+.. ++.|..+|+.+.. +.-||+||.++|+|+.+.|++..|-. .+++++|||++.|.
T Consensus 183 ~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~e-grlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~ 260 (396)
T COG0133 183 DTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKE-GRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 260 (396)
T ss_pred cceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHh-CCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcC
Confidence 33 4442 1122 3555666654 7999999976532 46799999999999999999988874 37899999999987
Q ss_pred chhhHHHHHH
Q 021235 259 PDYFYDYTQG 268 (315)
Q Consensus 259 ~~~~~~~i~~ 268 (315)
.....++...
T Consensus 261 Gi~t~~HaAt 270 (396)
T COG0133 261 GIETGKHAAT 270 (396)
T ss_pred ccCCCcccee
Confidence 6555444433
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.88 E-value=5.9e-22 Score=192.20 Aligned_cols=234 Identities=20% Similarity=0.213 Sum_probs=175.9
Q ss_pred cccCCCCCCCccccCCCCCCC--C---CeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHH
Q 021235 39 VFSLGHFPTPIHKWNLPNLPH--N---TEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAA 113 (315)
Q Consensus 39 r~~~~~~~TPL~~~~~~~L~~--g---~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA 113 (315)
...+..+.||+.+ .+.++. + .++|+|.|.+|| ++|||||.+..++..+.+.|..+|++ +|+||+|.++|
T Consensus 69 ~~~l~eg~tp~~~--~~~~~~~l~~~~~~lyvk~~~~nP--T~SFKDrg~~~~~~~~~~~g~~~I~~--ASSGnTgAs~a 142 (411)
T COG0498 69 AVSLGEGGTPLYK--APALAAPLGVLNDNLYVKELGHNP--TGSFKDRGMTVLVSLAKELGAKTILC--ASSGNTGASAA 142 (411)
T ss_pred hhhhhhccCcccc--CcccchhhccCCcceehhhhccCC--CcchhhhhHHHHHHHHHHhcCCEEEE--eCCchHHHHHH
Confidence 4467888999998 566654 4 359999999999 79999999999999999888666664 47799999999
Q ss_pred HHHHHcCCeEEEEecCC-CcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCC
Q 021235 114 VAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 192 (315)
Q Consensus 114 ~aa~~lGl~~~ivvp~~-~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 192 (315)
+++++.|++|+|++|.. .+ .+++.+|..+||+++.+.. .||++ .++++++.++. .++-..+.
T Consensus 143 aya~rag~~v~Vl~P~g~vs--------~~k~~q~~~~ga~~i~v~G-~fDda------~~~vk~~~~~~--~~~~~~ns 205 (411)
T COG0498 143 AYAARAGLKVFVLYPKGKVS--------PGKLAQMLTLGAHVIAVDG-NFDDA------QELVKEAANRE--GLLSAVNS 205 (411)
T ss_pred HHhccCCCeEEEEecCCCCC--------HHHHHHHHhcCCEEEEEcC-cHHHH------HHHHHHHHhhC--Cceeeccc
Confidence 99999999999999998 43 3689999999999999987 47753 33444454432 22334456
Q ss_pred CchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCC------CCeEEEEeccCCchhhHH--
Q 021235 193 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDYFYD-- 264 (315)
Q Consensus 193 ~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~------~~rVigV~~~g~~~~~~~-- 264 (315)
.||...+|+++.+.||++|+. +..||+|++|+|+||.+.|++.|+++..+ -++..+|++++......+
T Consensus 206 iNp~rlegq~t~~fe~~~ql~----~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~ 281 (411)
T COG0498 206 INPYRLEGQKTYAFEIAEQLG----WKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWK 281 (411)
T ss_pred cCHHHhhhhhhhHhHHHHHhC----CCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcc
Confidence 789999999999999999996 35799999999999999999999998643 346677887774432222
Q ss_pred ----HHHHHHhhhcCCC-------------CCCCeEEecCCcccchHHHHHH
Q 021235 265 ----YTQGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNILM 299 (315)
Q Consensus 265 ----~i~~l~~g~~~~~-------------~~~dvv~v~e~~~~~~~~~~~~ 299 (315)
...++.+.+.... .-.-.+.|+|.++..++..+..
T Consensus 282 ~~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~ 333 (411)
T COG0498 282 EGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAE 333 (411)
T ss_pred cccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHH
Confidence 2222333333210 1123778888888888777665
No 82
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.81 E-value=4.8e-20 Score=171.67 Aligned_cols=207 Identities=19% Similarity=0.158 Sum_probs=144.5
Q ss_pred CCCCCCCccccCCCCCCC----CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHH
Q 021235 42 LGHFPTPIHKWNLPNLPH----NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAK 117 (315)
Q Consensus 42 ~~~~~TPL~~~~~~~L~~----g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~ 117 (315)
..-+||||++ .++|.+ |.+||+||||+|+ .||+|+..+....--|.+.|.+.||+..|+ |-||.|+|.+|+
T Consensus 118 y~gRpspL~~--AkRLte~~q~ga~IylKrEdlnh--~GsHKiNnav~QallakrlGkknviaETGA-GQhGvatA~a~a 192 (477)
T KOG1395|consen 118 YLGRPSPLIR--AKRLTEHCQTGARIYLKREDLNH--TGSHKINNAVAQALLAKRLGKKNVIAETGA-GQHGVATATACA 192 (477)
T ss_pred HcCCCchhHH--HHHHHHHhCCCCEEEEEecCCCc--cccCCcccHHHHHHHHHHhcccceeeccCC-CccchHHHHHHH
Confidence 4457999998 777755 7899999999999 799999987655555778899999976554 899999999999
Q ss_pred HcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCccccc-ChHHHHHHHHHHHHHhCCCcEEeC-CCCCch
Q 021235 118 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKI-GSVTLTNILKEKLLKEGRRPYVIP-VGGSNS 195 (315)
Q Consensus 118 ~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~-~~~~~~~~~~~~l~~~~~~~y~ip-~g~~n~ 195 (315)
++|++|+|||-...-+. ..-|+.+||.+||+|+-|..+.-... ...+..+.....++. ..|.+- .-+..|
T Consensus 193 ~FGl~C~v~mgAed~~r-----qalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~et---t~y~~gs~~gphp 264 (477)
T KOG1395|consen 193 KFGLDCTVYMGAEDYRR-----QALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSET---THYAAGSAIGPHP 264 (477)
T ss_pred HhCCceEEEechhHHHH-----HHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhhe---eeeeecccCCCCC
Confidence 99999999997543221 13489999999999999976421100 011111222222211 112221 112222
Q ss_pred h--hHHH-HHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhH
Q 021235 196 I--GTWG-YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY 263 (315)
Q Consensus 196 ~--~~~G-~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~ 263 (315)
. ...- +..++.|-..|..+. .+..||.||.++|+|...+|++.-|.. ...++.+||+..+......
T Consensus 265 ~pt~vr~fhsvIg~Et~~Q~me~-~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp 333 (477)
T KOG1395|consen 265 YPTVVRTFHSVIGKETKIQQMEK-FGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTP 333 (477)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHH-hCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecccccCCc
Confidence 2 2222 346788888776542 356799999999999999999998874 3567899999988765443
No 83
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.67 E-value=7.4e-16 Score=142.84 Aligned_cols=202 Identities=20% Similarity=0.175 Sum_probs=141.4
Q ss_pred CCCCCCccccCCCCCCC----CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHH
Q 021235 43 GHFPTPIHKWNLPNLPH----NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 118 (315)
Q Consensus 43 ~~~~TPL~~~~~~~L~~----g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~ 118 (315)
.-+||||++ ..+|.+ .++||.|.|...| +||+|...+....--++..|+..|+|..|+ |-+|.|++.+|+.
T Consensus 75 ~gRPTPL~R--A~~LE~~L~tparIYyK~Eg~tp--tGSHKiNTAlAqaYyak~eg~~rl~TETGA-GQWGsAlslA~al 149 (432)
T COG1350 75 IGRPTPLIR--AKNLEEALGTPARIYYKYEGVTP--TGSHKINTALAQAYYAKKEGAKRLTTETGA-GQWGSALSLAAAL 149 (432)
T ss_pred hCCCCchhh--hhhHHHHhCCCcEEEEEecccCC--CCCCCcchHHHHHHHHHhcCceeeecccCC-chHHHHHHHHHHH
Confidence 337999999 777755 5799999999999 699999988554445678899999986654 8999999999999
Q ss_pred cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccCh-------------HHHHHHHHHHHHHhCCCc
Q 021235 119 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGS-------------VTLTNILKEKLLKEGRRP 185 (315)
Q Consensus 119 lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 185 (315)
+|++|+|||-...=.++ | -..-+|+++||+|+--+.. ..+.++ .-.+.++.++..+++ +.
T Consensus 150 f~lk~~V~Mvr~Sy~qK--p---yRk~lM~~yGa~V~pSPS~-~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~-~~ 222 (432)
T COG1350 150 FGLKATVFMVRVSYYQK--P---YRKYLMELYGAEVVPSPSE-LTEFGRKILKEDPDHPGSLGIAISEAIEYALKNE-NT 222 (432)
T ss_pred hCceeEEEEEehhhhcc--h---HHHHHHHHhCCeecCCCcc-hhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCC-Cc
Confidence 99999999976432222 2 2466899999999876532 111110 112233333333333 33
Q ss_pred EEeCCCCCchhh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHh---cCCC-CCeEEEEeccCCch
Q 021235 186 YVIPVGGSNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW---LGTL-KAKVHAFSVCDDPD 260 (315)
Q Consensus 186 y~ip~g~~n~~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k---~~~~-~~rVigV~~~g~~~ 260 (315)
.+.+ |+-... ..+..-+|.|...|+... +..||+++-+||+|..++|+.--|- +.+. .+++|+|++...+.
T Consensus 223 kY~l--GSVlnhvllhQTViGlEakkQle~~--~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~ 298 (432)
T COG1350 223 KYSL--GSVLNHVLLHQTVIGLEAKKQLEQA--GEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPK 298 (432)
T ss_pred eecc--hhHHHHHHHHHHHHhHHHHHHHHhc--CCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCc
Confidence 3343 222111 233344899998888753 4679999999999999999986663 3333 38999999987665
No 84
>PRK09225 threonine synthase; Validated
Probab=99.63 E-value=9.7e-15 Score=144.58 Aligned_cols=181 Identities=13% Similarity=0.018 Sum_probs=128.9
Q ss_pred CCCccccCCCCCCCCCeEEEEeCCCCCCCCchhHHHHHHH---HHHHHHHcCCCEEEecCCchhHHHHHH-HHHHHHcCC
Q 021235 46 PTPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEF---LMADAVAQGADCIITIGGIQSNHCRAA-AVAAKYLNL 121 (315)
Q Consensus 46 ~TPL~~~~~~~L~~g~~v~vKrEdl~~~~~gg~K~R~l~~---ll~~a~~~G~~~vVt~g~s~GNhg~al-A~aa~~lGl 121 (315)
.+||.+ + +-++|+.--+++| +++||||.+.. ++..+++.+..+|++ +|+||+|.|+ |+++.+.|+
T Consensus 88 ~~pl~~--l-----~~~~~~lELfhGP--T~sFKD~a~~~l~~~l~~a~~~~~~~Il~--ATSGdtG~Aa~aaf~~~~gi 156 (462)
T PRK09225 88 IAPLVQ--L-----DDNLYVLELFHGP--TLAFKDFALQFLAQLLEYVLKGEKITILG--ATSGDTGSAAAEAFRGKPNV 156 (462)
T ss_pred ccceEE--e-----CCCceeHhhccCC--ccchhhhHHHHHHHHHHHHHhCCCcEEEE--cCCCcHHHHHHHHHhCcCCC
Confidence 467666 2 2367887667777 79999999988 788888733556664 4779999999 799999999
Q ss_pred eEEEEecCC-CcccCCCCCccchHHHHHhC-CCEE--EEEcCCcccccChHHHHHHHHH--HHHHhCCCcEEeCCCCCch
Q 021235 122 DCYLILRTS-KVLVDQDPGLIGNLLVERLV-GAHI--ELISKEEYSKIGSVTLTNILKE--KLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 122 ~~~ivvp~~-~~~~~~~p~~~~n~~~~r~~-GAeV--~~v~~~~~~~~~~~~~~~~~~~--~l~~~~~~~y~ip~g~~n~ 195 (315)
+|+|++|+. .+. .+..+|..+ |++| +.|+. .||++ ...+.++.. .+++. ...+. .+..|+
T Consensus 157 ~~~V~~P~g~vs~--------~q~~Qm~t~~g~nv~vi~V~G-~fDD~--q~~vk~~~~d~~~~~~-~~l~s--aNSiN~ 222 (462)
T PRK09225 157 RVVILYPKGKVSP--------VQEKQMTTLQGDNIHVVAVEG-NFDDC--QALVKAAFNDEELKEK-LKLSS--ANSINI 222 (462)
T ss_pred EEEEEEcCCCCCH--------HHHHHHHhhcCCCeEEEEeCC-CHHHH--HHHHHHHhhchhhhhc-CceEE--EeccCH
Confidence 999999986 542 357778888 9976 66665 57753 112222111 11111 12222 233588
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCC-eEEEEe
Q 021235 196 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFS 254 (315)
Q Consensus 196 ~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~-rVigV~ 254 (315)
....|+++.+.|+++|+... ...+|.|+||+|+||.+.|.+.+ ++++..+ |+|+++
T Consensus 223 ~Ri~gQ~~yyfea~~ql~~~--~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~ 279 (462)
T PRK09225 223 GRLLAQIVYYFYAYLQLGIE--AGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHHHHHHHHHHHHhccc--cCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe
Confidence 88999999999999999520 13589999999999999999999 5566555 888876
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.62 E-value=1.9e-14 Score=142.50 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=126.8
Q ss_pred CeEEEEeCCCCCCCCchhHHHHHHHH---HHHHHHc--CCCEEEecCCchhHHHHH-HHHHHHHcCCeEEEEecCC-Ccc
Q 021235 61 TEVWLKRDDLSGMQLSGNKVRKLEFL---MADAVAQ--GADCIITIGGIQSNHCRA-AAVAAKYLNLDCYLILRTS-KVL 133 (315)
Q Consensus 61 ~~v~vKrEdl~~~~~gg~K~R~l~~l---l~~a~~~--G~~~vVt~g~s~GNhg~a-lA~aa~~lGl~~~ivvp~~-~~~ 133 (315)
-++|++-.+++| +++||||.+..+ +..++++ +..+|++ +|+||+|.| +|+.+.+.|++|+|++|.. .+
T Consensus 95 ~~~~~lELfhGP--T~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~--ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs- 169 (460)
T cd01560 95 DNLYVLELFHGP--TLAFKDMALQFLGRLLEYFLKRRNERITILV--ATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVS- 169 (460)
T ss_pred CCcEEeeeeeCC--CcchHHhHHHHHHHHHHHHHHhcCCCeEEEE--cCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC-
Confidence 378999999999 799999998765 6777655 5566775 477999999 5899999999999999986 54
Q ss_pred cCCCCCccchHHHHHhCCC---EEEEEcCCcccccChHHHHHHHHHHHHHhC---CCcEEeCCCCCchhhHHHHHHHHHH
Q 021235 134 VDQDPGLIGNLLVERLVGA---HIELISKEEYSKIGSVTLTNILKEKLLKEG---RRPYVIPVGGSNSIGTWGYIEAIKE 207 (315)
Q Consensus 134 ~~~~p~~~~n~~~~r~~GA---eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~---~~~y~ip~g~~n~~~~~G~~t~a~E 207 (315)
..+..+|..+|+ +++.|+. .||++ +.+++++-+.. ...-+...+..|+....|+.+.+.|
T Consensus 170 -------~~Q~~Qm~t~g~~Nv~vi~V~G-~fDd~------q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri~~Q~~yyf~ 235 (460)
T cd01560 170 -------PIQELQMTTLPADNVHVVAVEG-DFDDC------QSLVKALFADEDFNKKLKLSSANSINWARILAQIVYYFY 235 (460)
T ss_pred -------HHHHHHHHhhCCCceEEEEEcC-CHHHH------HHHHHHHhcChhhHhcceEEEEeccCHHHHHHHHHHHHH
Confidence 246788899997 7888876 47753 22222321110 0011222233588889999999999
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCC-eEEEEecc
Q 021235 208 IEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFSVC 256 (315)
Q Consensus 208 I~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~-rVigV~~~ 256 (315)
+++|+... ....++.|+||+|+||.+.|.+.+.+ ++.++ |+|++.-+
T Consensus 236 a~~ql~~~-~~~~p~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~a~n~ 283 (460)
T cd01560 236 AYLQLLKR-GEGEKVEFSVPTGNFGNILAGYYAKK-MGLPIKKLIVATNE 283 (460)
T ss_pred HHHHhccc-cCCCCCEEEEECCcHHHHHHHHHHHH-cCCCCccEEEEeCC
Confidence 99998521 01268999999999999999999965 55444 78775443
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.15 E-value=4.5e-10 Score=103.85 Aligned_cols=210 Identities=16% Similarity=0.170 Sum_probs=148.9
Q ss_pred CCCCcCcccCCCCCCCccccCCCC----CCC------CCeEEEEeCCCCCCCCchhHHHHH-HHHHHHH----HHcCC--
Q 021235 33 APIPSHVFSLGHFPTPIHKWNLPN----LPH------NTEVWLKRDDLSGMQLSGNKVRKL-EFLMADA----VAQGA-- 95 (315)
Q Consensus 33 ~~~p~~r~~~~~~~TPL~~~~~~~----L~~------g~~v~vKrEdl~~~~~gg~K~R~l-~~ll~~a----~~~G~-- 95 (315)
..+|...-.-++..+||+++ +. |.+ .-++|+|+|...|. .||+|.|+- +..+.+| ++.|.
T Consensus 65 k~FPeT~~~~GiIES~lv~i--~~mq~~Le~~Y~~~i~G~llLK~DshLpI-sGSIKARGGIYEVL~hAE~LAle~Gll~ 141 (443)
T COG3048 65 KAFPETAATGGIIESPLVEI--PAMQKRLEKEYQQPIPGRLLLKKDSHLPI-SGSIKARGGIYEVLKHAEKLALEAGLLT 141 (443)
T ss_pred HhCccccccCCeeccchhhh--HHHHHHHHHHhcCCCCcceeeeccCCCCc-ccceeccccHHHHHHHHHHHHHhcCccc
Confidence 66776555567788999873 32 211 34999999999884 588999974 3344443 44553
Q ss_pred ------------------CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 96 ------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 96 ------------------~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
+.-|.. ||.||.|.++-...+.+|+++++-|..++. .=|..++|+.|.+|+..
T Consensus 142 ~~DDYs~L~~~~f~~FFs~ysIaV-GSTGNLGlSIGI~sA~lGF~vtVHMSADAr--------~WKKd~LRs~gV~ViEY 212 (443)
T COG3048 142 LEDDYSILLSEEFKDFFSRYSIAV-GSTGNLGLSIGIMSAALGFKVTVHMSADAR--------AWKKDKLRSHGVTVVEY 212 (443)
T ss_pred ccchHHHhhcHHHHHHHHhheEee-cccCccceehhhhhhhhcceEEEEecchHH--------HHHHHHHHhcCceEEEe
Confidence 122444 467999999999999999999999987763 23688999999999887
Q ss_pred cCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCC---CCCCCeEEEeCCchhhH
Q 021235 158 SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG---GVKFDDIVVACGSGGTI 234 (315)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~---~~~~D~ivv~vGtGGt~ 234 (315)
.. +|.. .+++=. +-++..+.+|||-.-.+ ..-..||...+.-|..|+.+++- ...|=.|.+|||-||.-
T Consensus 213 e~-DY~~-----AVeeGR-k~a~~DP~c~FiDDE~S-~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgP 284 (443)
T COG3048 213 EQ-DYGV-----AVEEGR-KEAESDPNCFFIDDENS-RTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGP 284 (443)
T ss_pred cc-hhhH-----HHHHhh-hhhccCCceEEecccch-hhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCc
Confidence 76 3642 222211 22334677888854322 33458998889999999875321 12456789999999999
Q ss_pred HHHHHHHhcC-CCCCeEEEEeccCCchhh
Q 021235 235 AGLSLGSWLG-TLKAKVHAFSVCDDPDYF 262 (315)
Q Consensus 235 aGl~~~~k~~-~~~~rVigV~~~g~~~~~ 262 (315)
-|++-++|.. +.++.+.-+++..++-++
T Consensus 285 GGVafGLKl~fgd~VhcfFaEPthsPcMl 313 (443)
T COG3048 285 GGVAFGLKLAFGDHVHCFFAEPTHSPCML 313 (443)
T ss_pred chhhhhhHhhhcCceEEEEecCCCChHHH
Confidence 9999999975 568888899998887654
No 87
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=94.32 E-value=5 Score=38.34 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCC------CCCccchH---HHHHhCC---C
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQ------DPGLIGNL---LVERLVG---A 152 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~------~p~~~~n~---~~~r~~G---A 152 (315)
.+++.++++|++.|+.. ....+........|+..|++++.+-....+.... +....|.. .+.+.+| .
T Consensus 71 ~~i~~li~~~vdgIiv~-~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~g 149 (336)
T PRK15408 71 QLINNFVNQGYNAIIVS-AVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDKA 149 (336)
T ss_pred HHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 45778888999998864 3445555666677888999999875432110000 00001221 2333444 4
Q ss_pred EEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchh
Q 021235 153 HIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGG 232 (315)
Q Consensus 153 eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGG 232 (315)
+|.++.... ......++.+...+.+.+..+..-++.....+.....++ ....++++.- .++|.||++ +..
T Consensus 150 ki~il~g~~-~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~-~~~~~lL~~~------pdi~aI~~~--~~~ 219 (336)
T PRK15408 150 KVAFFYSSP-TVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSL-QTAEGILKAY------PDLDAIIAP--DAN 219 (336)
T ss_pred EEEEEECCC-CCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHH-HHHHHHHHHC------CCCcEEEEC--CCc
Confidence 665554311 111112222333334444444444555444444444444 2444555442 468999987 344
Q ss_pred hHHHHHHHHhcCCC-CCeEEEEe
Q 021235 233 TIAGLSLGSWLGTL-KAKVHAFS 254 (315)
Q Consensus 233 t~aGl~~~~k~~~~-~~rVigV~ 254 (315)
.+.|++.+++..+. ++.|+|++
T Consensus 220 ~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 220 ALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred cHHHHHHHHHhCCCCCEEEEEeC
Confidence 55678888887654 67788876
No 88
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=83.92 E-value=38 Score=31.82 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=45.4
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCC-CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchHHHHH
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNIL 298 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~-~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~ 298 (315)
++|+||++ +..++.|+..++++.+. ++.|+|++-.....+.. -++. .--.|..+-........+++
T Consensus 225 ~~~ai~~~--~d~~A~gvl~al~~~Gl~~vpVvg~D~~~~~~~~~------~~g~-----~~ttv~~~~~~~G~~a~~~l 291 (330)
T PRK15395 225 KIEVVIAN--NDAMAMGAVEALKAHNKSSIPVFGVDALPEALALV------KSGA-----MAGTVLNDANNQAKATFDLA 291 (330)
T ss_pred CeeEEEEC--CchHHHHHHHHHHhcCCCCCeEEeeCCCHHHHHHH------HhCC-----ceEEEecCHHHHHHHHHHHH
Confidence 47877754 66778899999999887 77888886543221111 1111 11133333333333444677
Q ss_pred HHHHhcCCCCCCCC
Q 021235 299 MNILMNGKQPTPPT 312 (315)
Q Consensus 299 ~~~~~~~~~~~~~~ 312 (315)
.+++ +|+.++|.+
T Consensus 292 ~~~l-~~~~~~~~~ 304 (330)
T PRK15395 292 KNLA-DGKGAAEGT 304 (330)
T ss_pred HHHh-cCCCCCcCC
Confidence 7766 677776543
No 89
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=78.98 E-value=8.3 Score=28.36 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.7
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
|+..|| |..|.-+|...+.+|.+++++.+....
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 444576 899999999999999999999887654
No 90
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=78.33 E-value=5.6 Score=34.93 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=42.2
Q ss_pred HHHcCCCEEEecCCchhHHHH-HHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 90 AVAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 90 a~~~G~~~vVt~g~s~GNhg~-alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
..++|+++|+.+| ...|+|. ++|..|..+|++++++.+.......+ .....++.++..|++|+
T Consensus 133 L~~~~i~~lii~G-~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~--~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 133 LRERGIDRVDVVG-LATDYCVKATALDALKAGFEVRVLEDACRAVDPE--TIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHCCCCEEEEEE-ecccHHHHHHHHHHHHCCCEEEEeccccCCCCHH--HHHHHHHHHHHccCEEC
Confidence 3467999999876 5566665 67888888999999988766542111 01233666777787763
No 91
>PRK12743 oxidoreductase; Provisional
Probab=76.77 E-value=44 Score=29.83 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=33.5
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
++..|+ +|.-|.++|......|.+.+++.+...... ..-...++.+|.++..+.
T Consensus 5 vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 5 AIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGA------KETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred EEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHH------HHHHHHHHhcCCceEEEE
Confidence 443454 478999999999999998877654332110 011334455777776654
No 92
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=74.45 E-value=29 Score=32.34 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=45.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHH
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 175 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~ 175 (315)
..||| | ++|.-|.++|..-++.|.+.+++-+...... .-..++-+.+|-+|....-+ +.+ .+.++++.
T Consensus 8 ~~lIT-G-ASsGIG~~~A~~lA~~g~~liLvaR~~~kL~------~la~~l~~~~~v~v~vi~~D-Ls~---~~~~~~l~ 75 (265)
T COG0300 8 TALIT-G-ASSGIGAELAKQLARRGYNLILVARREDKLE------ALAKELEDKTGVEVEVIPAD-LSD---PEALERLE 75 (265)
T ss_pred EEEEE-C-CCchHHHHHHHHHHHCCCEEEEEeCcHHHHH------HHHHHHHHhhCceEEEEECc-CCC---hhHHHHHH
Confidence 34555 5 4578999999999999999999988654221 11223334457777666542 222 12335555
Q ss_pred HHHHHh
Q 021235 176 EKLLKE 181 (315)
Q Consensus 176 ~~l~~~ 181 (315)
+++...
T Consensus 76 ~~l~~~ 81 (265)
T COG0300 76 DELKER 81 (265)
T ss_pred HHHHhc
Confidence 566654
No 93
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=74.13 E-value=13 Score=31.22 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHcCCCEEEecCCchhHHH-HHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 91 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg-~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++.|.++||.+|-. .|.| .++|.-|..+|++++++.+....... ..+...+..|+..|++|+
T Consensus 84 ~~~gi~~lii~G~~-T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~--~~h~~al~~~~~~~~~v~ 146 (157)
T cd01012 84 KATGRKQVVLAGLE-THVCVLQTALDLLEEGYEVFVVADACGSRSK--EDHELALARMRQAGAVLT 146 (157)
T ss_pred HhcCCCEEEEEEee-ccHHHHHHHHHHHHCCCEEEEEeeCCCCCCH--HHHHHHHHHHHHCCCEEe
Confidence 35789999887644 4555 57888889999999999887654211 012234677778888875
No 94
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=72.83 E-value=13 Score=35.22 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHc-CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC
Q 021235 82 KLEFLMADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 160 (315)
Q Consensus 82 ~l~~ll~~a~~~-G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~ 160 (315)
.++.||.+-... .-+.||--| +.|--|+++-..|+.+|++.+=+++.+... ..-...++.+||+-++.+..
T Consensus 147 TAyrmL~dfv~L~~GD~vIQNg-anS~VG~~ViQlaka~GiktinvVRdR~~i-------eel~~~Lk~lGA~~ViTeee 218 (354)
T KOG0025|consen 147 TAYRMLKDFVQLNKGDSVIQNG-ANSGVGQAVIQLAKALGIKTINVVRDRPNI-------EELKKQLKSLGATEVITEEE 218 (354)
T ss_pred HHHHHHHHHHhcCCCCeeeecC-cccHHHHHHHHHHHHhCcceEEEeecCccH-------HHHHHHHHHcCCceEecHHH
Confidence 345555554432 237788654 456788999999999999999999876421 22356778899998876643
No 95
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=72.57 E-value=20 Score=31.71 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=43.1
Q ss_pred HHcCCCEEEecCCchhHHH-HHHHHHHHHcCCeEEEEecCCCcccCCCCC-ccchHHHHHhCCCEEEE
Q 021235 91 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIEL 156 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg-~alA~aa~~lGl~~~ivvp~~~~~~~~~p~-~~~n~~~~r~~GAeV~~ 156 (315)
.+.|+++||.+| ...|.| .++|..|..+|++++++-+...... .++. ....+..++..|++|+-
T Consensus 138 ~~~gi~~lii~G-~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~-~~~~~~~~al~~~~~~~~~v~t 203 (212)
T PRK11609 138 REHGITELIVMG-LATDYCVKFTVLDALALGYQVNVITDGCRGVN-LQPQDSAHAFMEMSAAGATLYT 203 (212)
T ss_pred HHcCCCEEEEEE-eccCHHHHHHHHHHHHCCCEEEEEeeccCCCC-CCchhHHHHHHHHHHCCCEEEE
Confidence 367999998876 445655 5788889999999999987665421 0111 12246677778888763
No 96
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=72.07 E-value=24 Score=27.88 Aligned_cols=39 Identities=15% Similarity=-0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
|+.++..|+.+|.+.+++. .. ..+.+.++.+||+.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~--~~---------~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATD--RS---------EEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEE--SS---------HHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEE--CC---------HHHHHHHHhhcccccccc
Confidence 5666777777773333332 11 236777777777666544
No 97
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.37 E-value=59 Score=27.85 Aligned_cols=96 Identities=17% Similarity=0.048 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHc-CCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCccc
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYS 163 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~l-Gl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~ 163 (315)
.++..+.+.+. .|...|++.+....+.+...+++ |++++-+.+...... +...-+..++..++++++|+-+...
T Consensus 39 ~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~----~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 39 DLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEE----EEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred HHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChh----hHHHHHHHHHHcCCCEEEEECCCCH
Confidence 33555555554 45556888888887777777776 777776655432110 0123366778888888888764321
Q ss_pred ccChHHHHHHHHHHHHHhCCCcEEeCCCC
Q 021235 164 KIGSVTLTNILKEKLLKEGRRPYVIPVGG 192 (315)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 192 (315)
+ +....++.+..+...++..|+
T Consensus 114 Q-------E~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 114 Q-------ERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred H-------HHHHHHHHHHCCCCEEEEECc
Confidence 1 223334444444445565554
No 98
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=69.30 E-value=18 Score=32.26 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHcCCCEEEecCCchhHHHH-HHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 91 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~-alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++.|+++|+.+| ...|+|. ++|.-+..+|++++++-+......++ ....-+..++.+|++|+
T Consensus 142 ~~~gi~~lvi~G-~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~--~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 142 KAHGVRRVFICG-LAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPD--AISKQRAELLEAGVILL 204 (212)
T ss_pred HHCCCCEEEEEE-eccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHH--HHHHHHHHHHHCCCEEE
Confidence 457899998876 5567775 67888888999999998765542211 12234677888898875
No 99
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=68.15 E-value=1.2e+02 Score=30.66 Aligned_cols=132 Identities=16% Similarity=0.060 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCeEEEEe-------cCCCcccCCCCCccchHHHHHhCCCEEEEEcCCc----ccccChHHHHHHHHHHH
Q 021235 110 RAAAVAAKYLNLDCYLIL-------RTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE----YSKIGSVTLTNILKEKL 178 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivv-------p~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~----~~~~~~~~~~~~~~~~l 178 (315)
..+..+|+..|+++.+.. ....|. +.....+.....-|++.+..+.+. |-. ...+.+.+++++.
T Consensus 260 ~~ii~aaraag~pvi~atqmLeSM~~~p~PT----RAe~~dv~~~v~~G~d~v~ls~eta~G~yP~-~~v~~m~~I~~~~ 334 (473)
T TIGR01064 260 KKMIRKCNRAGKPVITATQMLDSMIKNPRPT----RAEVSDVANAILDGTDAVMLSGETAKGKYPV-EAVKMMAKIAKEA 334 (473)
T ss_pred HHHHHHHHHcCCCEEEEChhhhhhhcCCCCC----cccHHHHHHHHHcCCCEEEEcchhhcCCCHH-HHHHHHHHHHHHH
Confidence 346778999999988765 322221 111234556667799998886532 211 1223444444444
Q ss_pred HHhCCCc--EEeCC--CCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEe
Q 021235 179 LKEGRRP--YVIPV--GGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFS 254 (315)
Q Consensus 179 ~~~~~~~--y~ip~--g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~ 254 (315)
++..... |..+. ..............+.++.+.+ +.+.||+.+-||.|+--+++. .|+..|+++.
T Consensus 335 E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~-------~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT 403 (473)
T TIGR01064 335 EKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKL-------DAKAIVVLTESGRTARLLSKY----RPNAPIIAVT 403 (473)
T ss_pred HhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhc-------CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEc
Confidence 3311100 10110 0000011123334555666654 478999999999998877764 4888999888
Q ss_pred ccC
Q 021235 255 VCD 257 (315)
Q Consensus 255 ~~g 257 (315)
+..
T Consensus 404 ~~~ 406 (473)
T TIGR01064 404 PNE 406 (473)
T ss_pred CCH
Confidence 753
No 100
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.46 E-value=1.1e+02 Score=28.15 Aligned_cols=36 Identities=6% Similarity=-0.158 Sum_probs=26.7
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCC----CCCeEEEEecc
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGT----LKAKVHAFSVC 256 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~----~~~rVigV~~~ 256 (315)
.++|.||+ .+...+.|+..++++.+ .++.|+|++-.
T Consensus 201 ~~~~ai~~--~~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 201 PDVRLIWA--ANDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred CCccEEEE--CCchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 35898886 45677889999999876 35777777654
No 101
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=65.47 E-value=8.6 Score=32.42 Aligned_cols=84 Identities=20% Similarity=0.128 Sum_probs=49.7
Q ss_pred CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHH-HHHHHHHHHcCCeEEEEecCCCcccCCCC
Q 021235 60 NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDP 138 (315)
Q Consensus 60 g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg-~alA~aa~~lGl~~~ivvp~~~~~~~~~p 138 (315)
+-.++.|.. . ++|---.+... .+++|.++|+.+|-. .+.| .++|..|..+|++++++.+...... +
T Consensus 86 ~~~vi~K~~-~-----saf~~t~L~~~---L~~~gi~~vil~G~~-t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~---~ 152 (174)
T PF00857_consen 86 GDPVIEKNR-Y-----SAFFGTDLDEI---LRKRGIDTVILCGVA-TDVCVLATARDAFDRGYRVIVVEDACASYS---P 152 (174)
T ss_dssp TSEEEEESS-S-----STTTTSSHHHH---HHHTTESEEEEEEES-TTTHHHHHHHHHHHTT-EEEEEEEEEEBSS---H
T ss_pred ccceEEeec-c-----ccccccccccc---ccccccceEEEcccc-cCcEEehhHHHHHHCCCEEEEEChhhcCCC---H
Confidence 456777873 2 22211123222 345889999887644 4555 5788889999999999987644321 1
Q ss_pred C-ccchHHHHHhCCCEEEE
Q 021235 139 G-LIGNLLVERLVGAHIEL 156 (315)
Q Consensus 139 ~-~~~n~~~~r~~GAeV~~ 156 (315)
+ +...+..++..|++|+-
T Consensus 153 ~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 153 EAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHHHHHHHHHHHTSEEE-
T ss_pred HHHHHHHHHHHhCCCEEEe
Confidence 1 12346666777777753
No 102
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=64.89 E-value=76 Score=25.89 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=35.1
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
++..|+ ++.-|+++|..-.+.|-+.++++..+... +........++..|.++..+.-
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~----~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDS----EGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHH----HHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccc----cccccccccccccccccccccc
Confidence 444454 47999999999999977666666544100 0011224455677888777763
No 103
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.38 E-value=9.2 Score=32.23 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=26.0
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
|..+|+ ||.|.|+|...+..|.+++++.++.
T Consensus 2 I~ViGa--G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGA--GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESS--SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECc--CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 334576 9999999999999999999997753
No 104
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=63.85 E-value=99 Score=26.86 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC-CcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 86 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 86 ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~-~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.+..+.+.|.+-|++..-+...+-..+...|+++|+++.+-+... ++ ......+..+|++++-+..
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~--------~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDK--------VKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCCh--------HHHHHHHHHcCCCEEEEcC
Confidence 356677889997776544333345677888999999999876432 21 1234555667999888764
No 105
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=62.34 E-value=40 Score=28.94 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEe
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 188 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~i 188 (315)
|..+..+++.+|.++.--++...- ...=+..+...|-.|.+++... +.++++++.+.+..++.-++
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl-------~~~l~~~~~~~~~~ifllG~~~-------~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL-------FPDLLRRAEQRGKRIFLLGGSE-------EVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH-------HHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHHHHHHHCCCeEEE
Confidence 478899999999877322221110 0111334445577888887631 23455666777765443222
Q ss_pred C--CCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 189 P--VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 189 p--~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
- .++-++. --.+|.+++.. ..+|.|+++.|+-.-=
T Consensus 79 g~~~g~f~~~-------~~~~i~~~I~~----~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 79 GYHHGYFDEE-------EEEAIINRINA----SGPDIVFVGLGAPKQE 115 (172)
T ss_pred EecCCCCChh-------hHHHHHHHHHH----cCCCEEEEECCCCHHH
Confidence 1 1111111 12334444432 4699999999997544
No 106
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.56 E-value=1e+02 Score=28.49 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=23.5
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+++..|+ +|--|.++|...++.|.+++++.+.
T Consensus 42 ~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILLTGA-SSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3443454 4788999999999999988777554
No 107
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.38 E-value=1.4e+02 Score=27.83 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCC-CEEEEEc
Q 021235 80 VRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-AHIELIS 158 (315)
Q Consensus 80 ~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~G-AeV~~v~ 158 (315)
.++.+.+++++.+.|.+.|+..-=. =-+..-+-.+|+++|+..+.+++.+++. ..+..+.... .-++.++
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi~~I~lvaPtt~~--------~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLP-PEESDELLKAAEKHGIDPIFLVAPTTPD--------ERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHhCCCcEEEEe
Confidence 3566667777888888877654322 3566677777888888888887776642 1233333333 3466665
Q ss_pred CCccc--ccChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 159 KEEYS--KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 159 ~~~~~--~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
...-. +......+.+..+++++....+..+-+|-+++
T Consensus 179 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~ 217 (265)
T COG0159 179 RMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSP 217 (265)
T ss_pred cccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCH
Confidence 41100 00000113444445555434455555655544
No 108
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=61.09 E-value=1.4e+02 Score=27.67 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCC-CEEEEEcC
Q 021235 81 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-AHIELISK 159 (315)
Q Consensus 81 R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~G-AeV~~v~~ 159 (315)
++.+.+++++.+.|++.|+...=+ -.+..-+...|++.|+..+.++...++. ..+..+.... .=|..|+.
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT~~--------eri~~i~~~a~gFIY~vS~ 176 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTSSK--------SRIQKIARAAPGCIYLVST 176 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCCCH--------HHHHHHHHhCCCcEEEEcC
Confidence 467777888889999888765533 3677788889999999999888776642 1233333333 24566554
Q ss_pred Cccccc--ChHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 021235 160 EEYSKI--GSVTLTNILKEKLLKEGRRPYVIPVGGSNS 195 (315)
Q Consensus 160 ~~~~~~--~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~ 195 (315)
.+..-. .....+.+..+++++....+..+-+|-+++
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~ 214 (263)
T CHL00200 177 TGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTS 214 (263)
T ss_pred CCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCH
Confidence 221100 111223444555555444566665554444
No 109
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=60.22 E-value=55 Score=29.94 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCC---chhhHHHHHHHHhhh
Q 021235 197 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD---PDYFYDYTQGLLDGL 273 (315)
Q Consensus 197 ~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~---~~~~~~~i~~l~~g~ 273 (315)
+..|-..+..++.+-.. ..+|.+++.+|-=|++-++..++- ++.||||.+.=. ..-.......+++..
T Consensus 154 GVAGiHRLl~~l~r~~~-----~~~~~lIVvAGMEGaLPsvvagLv----D~PVIavPTsVGYG~g~gGiaaLltMLqSC 224 (254)
T COG1691 154 GVAGIHRLLSALKRLKI-----EDADVLIVVAGMEGALPSVVAGLV----DVPVIAVPTSVGYGAGGGGIAALLTMLQSC 224 (254)
T ss_pred ccchHHhhhhHHHHHHh-----hCCCeEEEEcccccchHHHHHhcc----CCCeEecccccccCcCCccHHHHHHHHHhc
Confidence 34554456555554433 369999999999999999999885 689999988632 112345556666666
Q ss_pred cCCCCCCCeEEecCCcccchHHHHHHHH
Q 021235 274 NAGVDSRDIVNIQNVSVYMTFKNILMNI 301 (315)
Q Consensus 274 ~~~~~~~dvv~v~e~~~~~~~~~~~~~~ 301 (315)
..++ -||.|++|-|...+--.+...
T Consensus 225 spGv---~VVNIdNGfGAa~~A~~I~r~ 249 (254)
T COG1691 225 SPGV---GVVNIDNGFGAAVLAVQILRR 249 (254)
T ss_pred CCCe---EEEEccCchHHHHHHHHHHHH
Confidence 5544 379999998888765555443
No 110
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=59.72 E-value=1.5e+02 Score=28.14 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=35.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
++|+..|+ +|.-|..+...|+.+|. +++++-.+. .|.+.++.+||+.+..
T Consensus 144 ~~VLV~ga-aGgVG~~aiQlAk~~G~-~~v~~~~s~----------~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGA-AGGVGSAAIQLAKALGA-TVVAVVSSS----------EKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecC-CchHHHHHHHHHHHcCC-cEEEEecCH----------HHHHHHHhcCCCEEEc
Confidence 45655554 47899999999999999 444433321 3566999999987663
No 111
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=59.53 E-value=23 Score=31.81 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=32.7
Q ss_pred HHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc
Q 021235 91 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
+.+-+++|...+|-+|=+-.+||.+|++.|+++.+++....|
T Consensus 38 lWREATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~p 79 (207)
T PF11814_consen 38 LWREATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGP 79 (207)
T ss_pred HHHHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCCC
Confidence 345567877555666778899999999999999999977653
No 112
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.36 E-value=1.3e+02 Score=26.61 Aligned_cols=205 Identities=13% Similarity=0.055 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcc-c-------CCCCCccch---HHHHHhC
Q 021235 82 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVL-V-------DQDPGLIGN---LLVERLV 150 (315)
Q Consensus 82 ~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~-~-------~~~p~~~~n---~~~~r~~ 150 (315)
+...++..+..++.+.||..+. ..+........++..|++++++-...... . ..+....+. ..+.+.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~-~~~~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~ 122 (275)
T cd06317 44 RQAAQVEDLIAQKVDGIILWPT-DGQAYIPGLRKAKQAGIPVVITNSNISEKGFEFIKSFTGPDDISQGERSAEAMCKAL 122 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEecC-CccccHHHHHHHHHCCCcEEEeCCCCCCCccchhhhhccccHHHHHHHHHHHHHHHc
Confidence 3334466677788998876532 22333344455678999998764321100 0 000000111 1122332
Q ss_pred -CC-EEEEEcC-CcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEe
Q 021235 151 -GA-HIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 227 (315)
Q Consensus 151 -GA-eV~~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~ 227 (315)
|. +|..+.. ..+. ....+.+...+.+++.+.....+.....+.....++ ....++.++- ..++|.||+
T Consensus 123 ~g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-----~~~~~ai~~- 193 (275)
T cd06317 123 GGKGQIVVIAGQPGNG--TAIERQKGFEDELAEVCPGVEVLDTQPADWDREKAQ-VAMEALITKF-----GDDIDGVYA- 193 (275)
T ss_pred CCCceEEEEecCCCCc--hHHHHHHHHHHHHHhhCCCCEEEeccCCCCCHHHHH-HHHHHHHHhC-----CCCccEEEE-
Confidence 53 5665532 2221 111222333444544443322221111111111233 2334444431 025889885
Q ss_pred CCchhhHHHHHHHHhcCCC--CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchHHHHHHHHHhcC
Q 021235 228 CGSGGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNG 305 (315)
Q Consensus 228 vGtGGt~aGl~~~~k~~~~--~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~~~ 305 (315)
++...+.|+..++++.+. ++.|+|++....... .+. .+. .--.+..+-........++|++.+ +|
T Consensus 194 -~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~~~~~~-------~i~-~~~---~~ttv~~~~~~~g~~a~~~l~~~l-~~ 260 (275)
T cd06317 194 -GDDNMARGALNAAKEAGLAGGIVIVGANNFAVGYE-------AIR-AGK---YYGTIYQSPVDDGEAALQTAMDVL-NG 260 (275)
T ss_pred -CCCcHHHHHHHHHHhcCCcCCcEEEEeCCCHHHHH-------HHH-cCC---ceEEEecCHHHHHHHHHHHHHHHh-cC
Confidence 445567899999998775 788888876532111 000 010 112233333455566677777765 66
Q ss_pred CCCC
Q 021235 306 KQPT 309 (315)
Q Consensus 306 ~~~~ 309 (315)
+.+.
T Consensus 261 ~~~~ 264 (275)
T cd06317 261 KDVP 264 (275)
T ss_pred CCCC
Confidence 5543
No 113
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=59.15 E-value=24 Score=31.12 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=39.7
Q ss_pred HHcCCCEEEecCCchhHHH-HHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 91 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg-~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++.|+++||.+|-. +|.| .++|.-|..+|++++++-+......++ .+...+..++..+|+|+
T Consensus 138 r~~gi~~lii~Gv~-T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~--~h~~al~~l~~~~a~v~ 200 (203)
T cd01013 138 KESGRDQLIITGVY-AHIGCLSTAVDAFMRDIQPFVVADAIADFSLE--EHRMALKYAATRCAMVV 200 (203)
T ss_pred HHcCCCEEEEEEec-cChhHHHHHHHHHHCCCeEEEeccccCCCCHH--HHHHHHHHHHhheeEee
Confidence 46789999887654 4554 577888888999998887765542110 01223555555666654
No 114
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=59.01 E-value=34 Score=33.04 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCC-chhhHHH----HHHHHhcCCCCCeEEEEeccCCchhhHHHHHHHHhhhcC-CC
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAG----LSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA-GV 277 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aG----l~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g~~~-~~ 277 (315)
...||.+++... .....|.||+..| +|||=+| ++..+++.++ ..++++-+.........+..+-..++.. ..
T Consensus 82 ~~e~I~~~le~~-~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~ 159 (349)
T cd02202 82 DLEEVMRAIDDR-GTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPAREEGERYSANAARSLDALSE 159 (349)
T ss_pred HHHHHHHHHhcc-ccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCCCCCchhhHHHHHHHHHHHH
Confidence 344566666420 0012889998887 4555555 4445565555 4456666655432211111111112211 12
Q ss_pred CCCCeEEecCCcc
Q 021235 278 DSRDIVNIQNVSV 290 (315)
Q Consensus 278 ~~~dvv~v~e~~~ 290 (315)
..|-++.+++.++
T Consensus 160 ~~D~viv~dNd~L 172 (349)
T cd02202 160 EADAIILFDNDAW 172 (349)
T ss_pred hCCEEEEEehHHH
Confidence 4566676766554
No 115
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=58.70 E-value=38 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=35.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|..++..|+.+|.+.++++.... .+..+++.+|++.+.
T Consensus 122 ~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~----------~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 122 RRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSP----------DRRELALSFGATALA 170 (280)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHcCCcEec
Confidence 45555554 67999999999999998555553221 367888999997544
No 116
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=58.67 E-value=30 Score=32.55 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=33.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |-.|.+++..|+.+|.+.+++.+. . .+.++++.+||+.+.
T Consensus 167 ~~VlV~G~--g~iG~~a~~~a~~~G~~vi~~~~~-~----------~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 167 GRLGLYGF--GGSAHLTAQVALAQGATVHVMTRG-A----------AARRLALALGAASAG 214 (329)
T ss_pred CEEEEEcC--CHHHHHHHHHHHHCCCeEEEEeCC-h----------HHHHHHHHhCCceec
Confidence 45555553 567888999999999974444322 1 268889999998654
No 117
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=58.31 E-value=31 Score=29.52 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=41.4
Q ss_pred CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHH-HHHHHHHHcCCeEEEEecCCC
Q 021235 60 NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 60 g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~-alA~aa~~lGl~~~ivvp~~~ 131 (315)
+-.++-|.- .+. +.+ ..+..+| ++.|+++||.+| ...|.|. ++|.-|..+|++++++-+...
T Consensus 88 ~~~v~~K~~-~sa--F~~---t~L~~~L---~~~gi~~vvi~G-~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 88 DEMVLVKKY-ASA--FFG---TSLAATL---TARGVDTLIVAG-CSTSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred CCEEEecCc-cCC--ccC---CcHHHHH---HHcCCCEEEEee-ecccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 445777763 222 222 2333333 468999998776 4557666 889999999999999887654
No 118
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=58.01 E-value=43 Score=31.70 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=34.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch--HHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n--~~~~r~~GAeV~~v~~ 159 (315)
++|+|+|-| ....++-..|++.|.++.+++.++.|.. .|. ...+...|-++.++.+
T Consensus 117 ~~ILT~~~S--~tv~~~l~~a~~~~~~f~V~v~EsrP~~------~G~~~a~~L~~~gI~vtlI~D 174 (301)
T TIGR00511 117 DVVMTHCNS--EAALSVIKTAFEQGKDIEVIATETRPRK------QGHITAKELRDYGIPVTLIVD 174 (301)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCcEEEEEecCCCcc------hHHHHHHHHHHCCCCEEEEeh
Confidence 567777532 3444445566667888888887776532 232 4445556877877765
No 119
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.85 E-value=97 Score=26.50 Aligned_cols=120 Identities=13% Similarity=-0.012 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCcc-chHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEE
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLI-GNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYV 187 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~-~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ 187 (315)
|..++.+++.+|.+..--++... .. .=+..+...+..|.+++... +.++++++.+++..++.-+
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~d--------l~~~ll~~~~~~~~~v~llG~~~-------~~~~~~~~~l~~~yp~l~i 75 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSD--------LMPALLELAAQKGLRVFLLGAKP-------EVLEKAAERLRARYPGLKI 75 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHH--------HHHHHHHHHHHcCCeEEEECCCH-------HHHHHHHHHHHHHCCCcEE
Confidence 47899999999998322222211 11 11333444578899987631 2345556667776554433
Q ss_pred eC--CCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEec
Q 021235 188 IP--VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 255 (315)
Q Consensus 188 ip--~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~ 255 (315)
+- .++.... .-.+|.+++.. ..+|.|+++.|+---=. .+...+...+..-+++|-.
T Consensus 76 ~g~~~g~~~~~-------~~~~i~~~I~~----~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 76 VGYHHGYFGPE-------EEEEIIERINA----SGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred EEecCCCCChh-------hHHHHHHHHHH----cCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEece
Confidence 31 1111111 11235555543 46999999999965442 2333333333333444433
No 120
>PRK07109 short chain dehydrogenase; Provisional
Probab=56.67 E-value=1.8e+02 Score=27.48 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=35.2
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
+++..|+ +|--|.++|....+.|.+++++.+.... .......++..|+++..+.-
T Consensus 10 ~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~-------l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 10 VVVITGA-SAGVGRATARAFARRGAKVVLLARGEEG-------LEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHHHHHHHHcCCcEEEEEe
Confidence 3443454 4789999999999999988777653221 01123445667888776653
No 121
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=56.54 E-value=27 Score=30.80 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
.+|+.|..++.+....+.+.+++++.... .....++..|++++.+
T Consensus 6 atG~~G~~v~~~L~~~~~~V~~l~R~~~~---------~~~~~l~~~g~~vv~~ 50 (233)
T PF05368_consen 6 ATGNQGRSVVRALLSAGFSVRALVRDPSS---------DRAQQLQALGAEVVEA 50 (233)
T ss_dssp TTSHHHHHHHHHHHHTTGCEEEEESSSHH---------HHHHHHHHTTTEEEES
T ss_pred CccHHHHHHHHHHHhCCCCcEEEEeccch---------hhhhhhhcccceEeec
Confidence 45899999999999999999999886531 1355667788887643
No 122
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=55.49 E-value=54 Score=31.13 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=35.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch--HHHHHhCCCEEEEEcCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 160 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n--~~~~r~~GAeV~~v~~~ 160 (315)
++|+|+|-| ....++-..|.+.|.++.+++.++.|.. .|. ...+...|-++.++.+.
T Consensus 122 ~~ILT~~~S--~tv~~~l~~A~~~~k~~~V~v~EsrP~~------~G~~~a~~L~~~GI~vtlI~Ds 180 (310)
T PRK08535 122 DVIMTHCNS--SAALSVIKTAHEQGKDIEVIATETRPRN------QGHITAKELAEYGIPVTLIVDS 180 (310)
T ss_pred CEEEEeCCc--HHHHHHHHHHHHCCCeEEEEEecCCchh------hHHHHHHHHHHCCCCEEEEehh
Confidence 467777532 3444444566667888888888776532 232 34555678888877653
No 123
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=55.08 E-value=20 Score=31.40 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
|+|-.|.++|-.+..+|..++++....
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 579999999999999999999998663
No 124
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=54.46 E-value=22 Score=28.16 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=49.3
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
+++.+.+|++|+.+.... +. .+. +++-|-. .++.....+ ...+|.+... +..+|.
T Consensus 7 ~q~ak~~G~~vi~~~~~~-------~k-~~~---~~~~Ga~-~~~~~~~~~---------~~~~i~~~~~----~~~~d~ 61 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRSE-------EK-LEL---AKELGAD-HVIDYSDDD---------FVEQIRELTG----GRGVDV 61 (130)
T ss_dssp HHHHHHTTSEEEEEESSH-------HH-HHH---HHHTTES-EEEETTTSS---------HHHHHHHHTT----TSSEEE
T ss_pred HHHHHHcCCEEEEEECCH-------HH-HHH---HHhhccc-ccccccccc---------cccccccccc----cccceE
Confidence 678899999998887632 12 222 2232423 344332222 2334544433 246999
Q ss_pred EEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccC
Q 021235 224 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 257 (315)
Q Consensus 224 ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g 257 (315)
+|-++|++.++.-....++ +.-+++-+...+
T Consensus 62 vid~~g~~~~~~~~~~~l~---~~G~~v~vg~~~ 92 (130)
T PF00107_consen 62 VIDCVGSGDTLQEAIKLLR---PGGRIVVVGVYG 92 (130)
T ss_dssp EEESSSSHHHHHHHHHHEE---EEEEEEEESSTS
T ss_pred EEEecCcHHHHHHHHHHhc---cCCEEEEEEccC
Confidence 9999998887765555544 444555555544
No 125
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=53.01 E-value=48 Score=31.19 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=35.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++.+..|+.+|.+-++++.... .++++.+.+||+.++
T Consensus 171 ~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~----------~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSP----------RSLSLAREMGADKLV 219 (343)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCH----------HHHHHHHHcCCcEEe
Confidence 45555553 78999999999999997555554322 267888999998654
No 126
>PRK07478 short chain dehydrogenase; Provisional
Probab=52.63 E-value=1.1e+02 Score=27.01 Aligned_cols=31 Identities=32% Similarity=0.191 Sum_probs=22.5
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
.+|| |+ +|.-|.++|..-.+.|.+++++.+.
T Consensus 9 ~lIt-Ga-s~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 9 AIIT-GA-SSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred EEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444 54 4788999999989999987776543
No 127
>PLN02621 nicotinamidase
Probab=52.62 E-value=39 Score=29.55 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHcCCCEEEecCCchhHHHH-HHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 91 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~-alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++.|.++||.+| ...|.|. .+|..|..+|++++++.+......++ .+...+..++..+++|.
T Consensus 123 ~~~gi~~lvi~G-v~T~~CV~~Ta~~a~~~gy~v~v~~Da~as~~~~--~h~~al~~~~~~~~~v~ 185 (197)
T PLN02621 123 RKIGVKEVIVTG-VMTNLCCETTAREAFVRGFRVFFSTDATATANEE--LHEATLKNLAYGFAYLV 185 (197)
T ss_pred HHCCCCEEEEEe-cccchhHHHHHHHHHHCCCEEEEeccccCCCCHH--HHHHHHHHHHhhceEee
Confidence 467899998775 4566665 66778888999999988766542111 11233555656666664
No 128
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=52.44 E-value=1.7e+02 Score=26.12 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=22.9
Q ss_pred CEEEecCCc-hhHHHHHHHHHHHHcCCeEEEEe
Q 021235 96 DCIITIGGI-QSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 96 ~~vVt~g~s-~GNhg~alA~aa~~lGl~~~ivv 127 (315)
..+|| |++ ++--|+++|....+.|.++++..
T Consensus 8 ~~lIt-Gas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 8 KALVT-GIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred EEEEe-CCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 34554 553 36789999999999999987654
No 129
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=52.33 E-value=71 Score=29.91 Aligned_cols=57 Identities=23% Similarity=0.103 Sum_probs=34.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch--HHHHHhCCCEEEEEcCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 160 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n--~~~~r~~GAeV~~v~~~ 160 (315)
++|+|++.| -...++-..|...|.++.+++.++.|.. .|. ...+...|-.+.++.+.
T Consensus 111 ~~ILTh~~S--~tv~~~l~~A~~~gk~~~V~v~EsrP~~------qG~~la~eL~~~GI~vtlI~Ds 169 (275)
T PRK08335 111 DVIITHSFS--SAVLEILKTAKRKGKRFKVILTESAPDY------EGLALANELEFLGIEFEVITDA 169 (275)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCceEEEEecCCCch------hHHHHHHHHHHCCCCEEEEecc
Confidence 467777532 2344444566778888888888776532 222 33344568888777653
No 130
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=51.71 E-value=1.8e+02 Score=26.01 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=47.7
Q ss_pred EecCCchhHHHHHHHHHHHHcCC--eEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHH
Q 021235 99 ITIGGIQSNHCRAAAVAAKYLNL--DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKE 176 (315)
Q Consensus 99 Vt~g~s~GNhg~alA~aa~~lGl--~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~ 176 (315)
|..+|++|| .++++-+|+.-.+ +...|+..... ..-+...+.+|-....+....|.. ..++-+++.+
T Consensus 5 VlaSG~GSN-lqaiida~~~~~~~a~i~~Visd~~~--------A~~lerA~~~gIpt~~~~~k~~~~--r~~~d~~l~~ 73 (200)
T COG0299 5 VLASGNGSN-LQAIIDAIKGGKLDAEIVAVISDKAD--------AYALERAAKAGIPTVVLDRKEFPS--REAFDRALVE 73 (200)
T ss_pred EEEeCCccc-HHHHHHHHhcCCCCcEEEEEEeCCCC--------CHHHHHHHHcCCCEEEeccccCCC--HHHHHHHHHH
Confidence 344555445 4677777764333 33334433321 113667777777666666545542 2233344555
Q ss_pred HHHHhCCCcEEeCCCCCchhhHHHHHH-HHHHHHHHHh
Q 021235 177 KLLKEGRRPYVIPVGGSNSIGTWGYIE-AIKEIEQQLQ 213 (315)
Q Consensus 177 ~l~~~~~~~y~ip~g~~n~~~~~G~~t-~a~EI~~Q~~ 213 (315)
.+.+.+.+.. + ..||+. ++.++.++..
T Consensus 74 ~l~~~~~dlv-v---------LAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 74 ALDEYGPDLV-V---------LAGYMRILGPEFLSRFE 101 (200)
T ss_pred HHHhcCCCEE-E---------EcchHHHcCHHHHHHhh
Confidence 5655443322 2 245655 4667776664
No 131
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=51.41 E-value=2.7e+02 Score=28.07 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHcCCeEEEEec
Q 021235 106 SNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 106 GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+.|.++|..-...|++++++=+
T Consensus 10 G~MG~~lA~nL~~~G~~V~v~dr 32 (470)
T PTZ00142 10 AVMGQNLALNIASRGFKISVYNR 32 (470)
T ss_pred hHHHHHHHHHHHHCCCeEEEEeC
Confidence 89999999999999999888743
No 132
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=51.16 E-value=51 Score=30.59 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=35.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
++|+..|+ .|--|++++..|+.+|.+.+.+.+.. .+...++.+|++.++.
T Consensus 140 ~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~-----------~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 140 ETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSD-----------EKVAYLKKLGFDVAFN 189 (325)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCCEEEe
Confidence 45655554 37789999999999999866554332 2577788999975543
No 133
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=50.80 E-value=27 Score=33.65 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
-..++.+| ++.+|.+..+... ..++++.+.+++.+-...+...-..++.. ....|+.+++.. .++|
T Consensus 15 ~~~l~~~g-r~lvVt~~~~~~~---~~~~~v~~~L~~~~i~~~~~~~~~~~p~~-----~~v~~~~~~~~~----~~~D- 80 (366)
T PF00465_consen 15 GEELKRLG-RVLVVTDPSLSKS---GLVDRVLDALEEAGIEVQVFDGVGPNPTL-----EDVDEAAEQARK----FGAD- 80 (366)
T ss_dssp HHHHHCTT-EEEEEEEHHHHHH---THHHHHHHHHHHTTCEEEEEEEESSS-BH-----HHHHHHHHHHHH----TTSS-
T ss_pred HHHHHhcC-CEEEEECchHHhC---ccHHHHHHHHhhCceEEEEEecCCCCCcH-----HHHHHHHHHHHh----cCCC-
Confidence 34567778 8877765433321 13456666676655433222211233321 234466666653 3566
Q ss_pred EEEeCCchhhHHHHHHHHhc--C----------------CCCCeEEEEeccCC
Q 021235 224 IVVACGSGGTIAGLSLGSWL--G----------------TLKAKVHAFSVCDD 258 (315)
Q Consensus 224 ivv~vGtGGt~aGl~~~~k~--~----------------~~~~rVigV~~~g~ 258 (315)
+|+++|+|..+ -+++++.. . .+..+++.|....+
T Consensus 81 ~IIaiGGGS~~-D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 81 CIIAIGGGSVM-DAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp EEEEEESHHHH-HHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred EEEEcCCCCcC-cHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 67888887654 33444332 1 12378999988643
No 134
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=50.57 E-value=2.1e+02 Score=26.52 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc
Q 021235 80 VRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 80 ~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
-++.+.+++++.+.|++.|+...=. =.....+.-+|++.|+..+.++...++
T Consensus 101 ~~G~e~F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 101 QYGIERFFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HH-HHHHHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred ccchHHHHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3456666667777777766654322 133445566677777777777666553
No 135
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.53 E-value=1.8e+02 Score=25.73 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=23.9
Q ss_pred EEEecCCch-hHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~-GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+++..|+++ |.-|.++|..-...|.+.+++.+.
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 344446654 579999999999999987776543
No 136
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.92 E-value=1.8e+02 Score=25.47 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=32.4
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+++..|+ +|.-|+++|..-...|.+.+++........ ..-...++..|.++..+.
T Consensus 6 ~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~------~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 6 VALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAA------EETAEEIEALGRKALAVK 60 (250)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHH------HHHHHHHHhcCCeEEEEE
Confidence 3444454 478999999999999998776443222110 111234455677766654
No 137
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=49.71 E-value=43 Score=30.82 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=34.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ +|--|+++...|+.+|.+.+.+.+.. .+...++.+|++-++
T Consensus 145 ~~vlI~ga-~g~vG~~aiqlA~~~G~~vi~~~~s~-----------~~~~~l~~~Ga~~vi 193 (329)
T cd08294 145 ETVVVNGA-AGAVGSLVGQIAKIKGCKVIGCAGSD-----------DKVAWLKELGFDAVF 193 (329)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCCEEE
Confidence 56655554 47889999999999999855554322 257788889997554
No 138
>PRK08227 autoinducer 2 aldolase; Validated
Probab=49.52 E-value=71 Score=29.74 Aligned_cols=98 Identities=18% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEE---ecCCchhHH----HHHHHHHHHHcCCeEEEEecCCCc
Q 021235 60 NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCII---TIGGIQSNH----CRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 60 g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vV---t~g~s~GNh----g~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
+..+.+|...-+.. ........+..-+++|.+.|++.|. ..|+..-+. ...++..|.++|++..++.|....
T Consensus 74 ~~~lil~ls~~t~~-~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~ 152 (264)
T PRK08227 74 NKPVVLRASGGNSI-LKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKD 152 (264)
T ss_pred CCcEEEEEcCCCCC-CCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCC
Confidence 45688888764431 1111233344448899999998663 244322111 235677899999999987765432
Q ss_pred ccCCCCC-ccchHHHHHhCCCEEEEEcC
Q 021235 133 LVDQDPG-LIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 133 ~~~~~p~-~~~n~~~~r~~GAeV~~v~~ 159 (315)
..+ ++. ...-....-.+||+++-+..
T Consensus 153 ~~~-~~~~ia~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 153 MVR-DARYFSLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred cCc-hHHHHHHHHHHHHHHcCCEEecCC
Confidence 111 111 11113455578999998764
No 139
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=49.26 E-value=60 Score=32.24 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=38.7
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|| ||.|.-+|..+.++|.+++++.+..... .+.....+..++..|.+++.
T Consensus 273 k~VvVIGg--G~~a~d~A~~l~~~G~~Vtlv~~~~~~~---~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 273 KSVVVIGG--GNTAVDSARTALRLGAEVHCLYRRTRED---MTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCEEEEEeecCccc---CCCCHHHHHHHHhCCCEEEe
Confidence 45666777 8999999999999999999887654211 11111224556777887765
No 140
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=49.22 E-value=1.9e+02 Score=25.54 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc------ccCCCCCccch---HHHHHhC-C-CE
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV------LVDQDPGLIGN---LLVERLV-G-AH 153 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~------~~~~~p~~~~n---~~~~r~~-G-Ae 153 (315)
..+.....++++.+|..+. ..+....+...+...|++++.+-..... ....+....+. ..+.+.+ | .+
T Consensus 47 ~~i~~l~~~~vdgiii~~~-~~~~~~~~~~~l~~~~iPvv~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~ 125 (272)
T cd06301 47 SQVENFIAQGVDAIIVVPV-DTAATAPIVKAANAAGIPLVYVNRRPENAPKGVAYVGSDEVVAGRLQAEYVADKLGGKGN 125 (272)
T ss_pred HHHHHHHHcCCCEEEEecC-chhhhHHHHHHHHHCCCeEEEecCCCCCCCCeeEEEecChHHHHHHHHHHHHHHhCCCcc
Confidence 3466667788999886543 2333345555678899998877532111 01111101112 1133332 3 46
Q ss_pred EEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhh
Q 021235 154 IELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 233 (315)
Q Consensus 154 V~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 233 (315)
+.++....... ....+.+-..+.+.+.+ ..........+.....++ ....++.++. .++|+||+.. ...
T Consensus 126 i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~------~~~~ai~~~~--d~~ 194 (272)
T cd06301 126 VAILMGPLGQS-AQIDRTKGVEEVLAKYP-DIKVVEEQTANWSRAEAM-DLMENWLSSG------GKIDAVVANN--DEM 194 (272)
T ss_pred EEEEECCCCCc-cHHHHHHHHHHHHHHCC-CcEEEecCCCCccHHHHH-HHHHHHHHhC------CCCCEEEECC--Cch
Confidence 76664321111 11122233344454433 222222111111112233 2333443321 3578887643 345
Q ss_pred HHHHHHHHhcCCC---CCeEEEEecc
Q 021235 234 IAGLSLGSWLGTL---KAKVHAFSVC 256 (315)
Q Consensus 234 ~aGl~~~~k~~~~---~~rVigV~~~ 256 (315)
+.|+..++++.+. ++.|+|++-.
T Consensus 195 a~~~~~~l~~~g~~~~di~ivg~d~~ 220 (272)
T cd06301 195 ALGAIMALKAAGKSDKDVPVAGIDGT 220 (272)
T ss_pred HHHHHHHHHHcCCCCCCcEEEeeCCC
Confidence 6688888887663 6788887654
No 141
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=48.96 E-value=1.1e+02 Score=31.39 Aligned_cols=50 Identities=20% Similarity=0.056 Sum_probs=36.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+++..|+ |..|++.+..++.+|.+++++ +.+. .+++..+.+|++.+.++
T Consensus 165 akVlViGa--G~iGl~Aa~~ak~lGA~V~v~-d~~~----------~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 165 AKVLVIGA--GVAGLAAIGAANSLGAIVRAF-DTRP----------EVKEQVQSMGAEFLELD 214 (511)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEEE-eCCH----------HHHHHHHHcCCeEEecc
Confidence 35555665 899999999999999874444 3322 25778888999987765
No 142
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=48.83 E-value=62 Score=30.63 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=37.2
Q ss_pred EEEecCC-chhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGG-IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~-s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+|..+|- ..+|.+++++.+++++|++++++.|..-.. | ..-+..++..|+++....
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~----~--~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRM----P--KEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccC----C--HHHHHHHHHcCCEEEEEC
Confidence 4444443 237999999999999999999999876411 1 112344555677776543
No 143
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=48.54 E-value=40 Score=31.96 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=24.8
Q ss_pred HHHHHHHcCCeEEEEecCCCcccCCCCCccc---hHHHHHhCCCEEEEEcC
Q 021235 112 AAVAAKYLNLDCYLILRTSKVLVDQDPGLIG---NLLVERLVGAHIELISK 159 (315)
Q Consensus 112 lA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~---n~~~~r~~GAeV~~v~~ 159 (315)
+-..|.+.|.++.+++.++.|.. .| ....+...|-++.++.+
T Consensus 142 ~l~~A~~~g~~~~V~v~EsrP~~------~G~~~~a~~L~~~gI~vtlI~D 186 (303)
T TIGR00524 142 VIRSAWEDGKRIRVIACETRPRN------QGSRLTAWELMQDGIDVTLITD 186 (303)
T ss_pred HHHHHHHcCCceEEEECCCCCcc------chHHHHHHHHHHCCCCEEEECh
Confidence 33446667777777777665431 23 23445556777777654
No 144
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=48.21 E-value=2.1e+02 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
...|+.+++.+ .++| +|+++|+|..+
T Consensus 71 ~v~~~~~~~~~----~~~d-~IIaiGGGS~~ 96 (374)
T cd08189 71 NVEAGLALYRE----NGCD-AILAVGGGSVI 96 (374)
T ss_pred HHHHHHHHHHh----cCCC-EEEEeCCccHH
Confidence 34455555543 2455 56778876643
No 145
>PRK06139 short chain dehydrogenase; Provisional
Probab=48.16 E-value=1.1e+02 Score=28.96 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=34.6
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+++..|+ +|--|+++|...++.|.+.+++.+..... ..-...++..|+++..+.
T Consensus 9 ~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l-------~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 9 VVVITGA-SSGIGQATAEAFARRGARLVLAARDEEAL-------QAVAEECRALGAEVLVVP 62 (330)
T ss_pred EEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHH-------HHHHHHHHhcCCcEEEEE
Confidence 4444454 47899999999999999977765432210 112345566788876554
No 146
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=48.06 E-value=35 Score=32.98 Aligned_cols=90 Identities=22% Similarity=0.118 Sum_probs=51.2
Q ss_pred Cchhh-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCC-chhhHHHHH----HHHhcCCCCCeEEEEeccCCchhhHHHH
Q 021235 193 SNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLS----LGSWLGTLKAKVHAFSVCDDPDYFYDYT 266 (315)
Q Consensus 193 ~n~~~-~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl~----~~~k~~~~~~rVigV~~~g~~~~~~~~i 266 (315)
.||.. .....+--.||.+.+. ..|.+|+.+| +|||-+|.+ ..+|+ ...-+++|-+...........
T Consensus 73 a~P~vG~~aAee~~~~I~~~l~------g~dmvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~EG~~r~ 144 (338)
T COG0206 73 ANPEVGRAAAEESIEEIEEALK------GADMVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSFEGSPRM 144 (338)
T ss_pred CCcHHHHHHHHHHHHHHHHHhc------cCCeEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchhcCchHH
Confidence 44443 2333344556666664 4788888777 555555533 33444 467788888876655444444
Q ss_pred HHHHhhhcC-CCCCCCeEEecCCcc
Q 021235 267 QGLLDGLNA-GVDSRDIVNIQNVSV 290 (315)
Q Consensus 267 ~~l~~g~~~-~~~~~dvv~v~e~~~ 290 (315)
..-..++.. ...+|.++.+++.+.
T Consensus 145 ~~A~~gi~~L~~~~DtlIvi~Ndkl 169 (338)
T COG0206 145 ENAEEGIEELREVVDTLIVIPNDKL 169 (338)
T ss_pred HHHHHHHHHHHHhCCcEEEEecHHH
Confidence 444444443 235677887777544
No 147
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.04 E-value=2e+02 Score=25.50 Aligned_cols=204 Identities=14% Similarity=0.019 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc--------ccCCCCCccchH--HHHHh-
Q 021235 81 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV--------LVDQDPGLIGNL--LVERL- 149 (315)
Q Consensus 81 R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~--------~~~~~p~~~~n~--~~~r~- 149 (315)
.+...++..+..++.+.+|.... ..+........++..|++++.+-..... ....+....++. ..+..
T Consensus 44 ~~~~~~i~~l~~~~vdgiii~~~-~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~ 122 (271)
T cd06312 44 ADMARLIEAAIAAKPDGIVVTIP-DPDALDPAIKRAVAAGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAEL 122 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCC-ChHHhHHHHHHHHHCCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHHh
Confidence 34445566777788998887543 2222223334457789998887432211 000010001111 11112
Q ss_pred CCC-EEEEEcC-CcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEe
Q 021235 150 VGA-HIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 227 (315)
Q Consensus 150 ~GA-eV~~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~ 227 (315)
.|. ++.++.. ..+. ...++.+...+.+++.+-. ........+.. .++ ....++.++. .++|+||+.
T Consensus 123 ~g~~~i~~i~g~~~~~--~~~~r~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~l~~~------~~~~aI~~~ 190 (271)
T cd06312 123 KGGKNVLCVIHEPGNV--TLEDRCAGFADGLGGAGIT-EEVIETGADPT--EVA-SRIAAYLRAN------PDVDAVLTL 190 (271)
T ss_pred cCCCeEEEEecCCCCc--cHHHHHHHHHHHHHhcCce-eeEeecCCCHH--HHH-HHHHHHHHhC------CCccEEEEe
Confidence 332 4555532 1111 1112333333444443211 11111111211 222 2334443321 358888877
Q ss_pred CCchhhHHHHHHHHhcCCC--CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchHHHHHHHHHhcC
Q 021235 228 CGSGGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNG 305 (315)
Q Consensus 228 vGtGGt~aGl~~~~k~~~~--~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~~~ 305 (315)
. +.++.|+..++++.+. ++.|+|++-.... ...+..+.- .-.|..+-........++|.+.+-+|
T Consensus 191 ~--d~~a~g~~~al~~~g~~~di~vvg~d~~~~~------~~~l~~g~~-----~~tv~~~~~~~g~~a~~~l~~~~~~~ 257 (271)
T cd06312 191 G--APSAAPAAKALKQAGLKGKVKLGGFDLSPAT------LQAIKAGYI-----QFAIDQQPYLQGYLPVSLLWLYKRYG 257 (271)
T ss_pred C--CccchHHHHHHHhcCCCCCeEEEEecCCHHH------HHHHhcCce-----EEEEecCchhhhHHHHHHHHHHHhcC
Confidence 6 4567788888888764 6778777654211 111111111 11233444566667788888888888
Q ss_pred CCCCC
Q 021235 306 KQPTP 310 (315)
Q Consensus 306 ~~~~~ 310 (315)
|-|+.
T Consensus 258 ~~~~~ 262 (271)
T cd06312 258 LLPGS 262 (271)
T ss_pred CCCCc
Confidence 87753
No 148
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=48.02 E-value=2.1e+02 Score=25.78 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCEE-EecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 80 VRKLEFLMADAVAQGADCI-ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 80 ~R~l~~ll~~a~~~G~~~v-Vt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.-.+..+.....+.|.+.| ||.-+. -...++...+++++ ++.| -..+-. + ....+.....||+.++-+
T Consensus 24 ~e~a~~~a~Ali~gGi~~IEITl~sp--~a~e~I~~l~~~~p-~~lI--GAGTVL---~---~~q~~~a~~aGa~fiVsP 92 (211)
T COG0800 24 VEEALPLAKALIEGGIPAIEITLRTP--AALEAIRALAKEFP-EALI--GAGTVL---N---PEQARQAIAAGAQFIVSP 92 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCCC--CHHHHHHHHHHhCc-ccEE--cccccc---C---HHHHHHHHHcCCCEEECC
Confidence 3344455555567788776 566443 46778888899988 4444 222211 1 234778888999998866
Q ss_pred C
Q 021235 159 K 159 (315)
Q Consensus 159 ~ 159 (315)
.
T Consensus 93 ~ 93 (211)
T COG0800 93 G 93 (211)
T ss_pred C
Confidence 4
No 149
>PRK08862 short chain dehydrogenase; Provisional
Probab=47.99 E-value=1.7e+02 Score=25.87 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=32.6
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+++..|++ +.-|+++|...++.|.+++++-+.... .....+.++..|.+++.+.
T Consensus 7 ~~lVtGas-~GIG~aia~~la~~G~~V~~~~r~~~~-------l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 7 IILITSAG-SVLGRTISCHFARLGATLILCDQDQSA-------LKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred EEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHH-------HHHHHHHHHhcCCCeEEEE
Confidence 34434544 678999999999999987766433211 1112344556677765443
No 150
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.92 E-value=55 Score=33.41 Aligned_cols=50 Identities=20% Similarity=0.042 Sum_probs=36.8
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
++|+..|+ |.-|++.+..|+.+|-+ +++++.+. .+++..+.+||+.+.+.
T Consensus 166 ~kVlViGa--G~iGL~Ai~~Ak~lGA~-V~a~D~~~----------~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGA--GVAGLAAIGAAGSLGAI-VRAFDTRP----------EVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCE-EEEEeCCH----------HHHHHHHHcCCeEEEec
Confidence 45666676 89999999999999985 44444332 36888999999965543
No 151
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=47.76 E-value=61 Score=27.77 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHHH
Q 021235 206 KEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLL 270 (315)
Q Consensus 206 ~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l~ 270 (315)
.|+.++..+ ..++.|++..|.-+.+.|+..++- ...||||.+..+..........++
T Consensus 43 ~~~~~~a~~----~g~~viIa~AG~aa~Lpgvva~~t----~~PVIgvP~~~~~l~G~daLlS~v 99 (156)
T TIGR01162 43 LEYAKEAEE----RGIKVIIAGAGGAAHLPGMVAALT----PLPVIGVPVPSKALSGLDSLLSIV 99 (156)
T ss_pred HHHHHHHHH----CCCeEEEEeCCccchhHHHHHhcc----CCCEEEecCCccCCCCHHHHHHHh
Confidence 455555442 247899999999899999988764 578999998765433444444444
No 152
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=47.49 E-value=61 Score=30.62 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=34.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++|+..|+ |.-|+..+..|+.+|.+.+++.+.... ..+..+++.+||+.+
T Consensus 174 ~~vlI~G~--G~vG~~a~q~ak~~G~~vi~~~~~~~~--------~~~~~~~~~~Ga~~v 223 (355)
T cd08230 174 RRALVLGA--GPIGLLAALLLRLRGFEVYVLNRRDPP--------DPKADIVEELGATYV 223 (355)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEe
Confidence 34554553 789999999999999975555442211 236788899999864
No 153
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.29 E-value=1.4e+02 Score=25.69 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 86 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 86 ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+..+.+.|++.+++...+..+....+...|+..|++..+.++.... + .........|++.+.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t-----~---~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVED-----P---EKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCC-----H---HHHHHHHHCCCCEEEEc
Confidence 45667788999888765433345677888899999999885443221 1 12334566789887763
No 154
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=47.16 E-value=2e+02 Score=25.19 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=32.8
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
+++..|+ +|.-|.++|..-.+.|.++++........ .......++..+.++..+..
T Consensus 4 ~ilItGa-s~giG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGA-SRGIGRATAVLAAARGWSVGINYARDAAA------AEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCCHHH------HHHHHHHHHhcCCcEEEEEe
Confidence 3444454 47899999999999999876654322110 01123344556767666543
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=47.01 E-value=35 Score=32.98 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=25.5
Q ss_pred CeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCc
Q 021235 222 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 222 D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~ 259 (315)
|-+|+.||.|+-+-.+..+.. -..+|++|+...-.
T Consensus 61 dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA 95 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH
Confidence 789999999965555554433 36799999987533
No 156
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=46.93 E-value=48 Score=31.03 Aligned_cols=49 Identities=6% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHh-CCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~-~GAeV~~ 156 (315)
++|+..|+ +|.-|++++..|+.+|.+.+...+.. .+...++. +|++-++
T Consensus 153 ~~VlI~Ga-~G~vG~~aiqlAk~~G~~Vi~~~~~~-----------~~~~~~~~~lGa~~vi 202 (338)
T cd08295 153 ETVFVSAA-SGAVGQLVGQLAKLKGCYVVGSAGSD-----------EKVDLLKNKLGFDDAF 202 (338)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHhcCCceeE
Confidence 45655554 47889999999999999855544332 25777777 9996544
No 157
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.84 E-value=1.4e+02 Score=25.83 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccc-hHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEE
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIG-NLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYV 187 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~-n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ 187 (315)
|..+..+++.+|.+..--++.. ++.. =+......|..|.+++... +.++++++.+++..+..-+
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~--------dl~~~l~~~~~~~~~~vfllG~~~-------~v~~~~~~~l~~~yP~l~i 77 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGP--------DLMEELCQRAGKEKLPIFLYGGKP-------DVLQQLKVKLIKEYPKLKI 77 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChH--------HHHHHHHHHHHHcCCeEEEECCCH-------HHHHHHHHHHHHHCCCCEE
Confidence 3678899999987642222211 1111 1233345677888887531 2345666777776544322
Q ss_pred eC-CCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchh
Q 021235 188 IP-VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGG 232 (315)
Q Consensus 188 ip-~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGG 232 (315)
.- .++-++. --.+|.+++.+ ..+|.|+|+.|+--
T Consensus 78 ~g~~g~f~~~-------~~~~i~~~I~~----s~~dil~VglG~Pk 112 (177)
T TIGR00696 78 VGAFGPLEPE-------ERKAALAKIAR----SGAGIVFVGLGCPK 112 (177)
T ss_pred EEECCCCChH-------HHHHHHHHHHH----cCCCEEEEEcCCcH
Confidence 21 2222221 11345555543 46999999999864
No 158
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.84 E-value=65 Score=27.52 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=31.6
Q ss_pred CEEEecCCchhHHHHHHHHHH--HHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAA--KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa--~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
..+|.+ |++-|-|-+++++- +..|+++++++-...... ++....++..++.+|.+++.
T Consensus 27 ~v~il~-G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 27 RVLILC-GPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKL--SEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp EEEEEE--SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSST--SHHHHHHHHHHHHTT-EEES
T ss_pred eEEEEE-CCCCChHHHHHHHHHHHHCCCeEEEEEEeccccC--CHHHHHHHHHHHhcCCcEee
Confidence 344555 45556555555544 458999998554322111 12234567788888866654
No 159
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=46.57 E-value=83 Score=29.11 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.4
Q ss_pred CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 94 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 94 G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
+.+.+|..++ .|--|++++..|+.+|.+.+++.+.. .+...++.+|++-++.
T Consensus 143 ~~~vlv~~~g-~g~vG~~a~q~a~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 143 GAKAVVHTAA-ASALGRMLVRLCKADGIKVINIVRRK-----------EQVDLLKKIGAEYVLN 194 (324)
T ss_pred CCcEEEEccC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEEEE
Confidence 4344453233 36789999999999999855543321 2577778899976554
No 160
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.86 E-value=56 Score=32.45 Aligned_cols=47 Identities=9% Similarity=0.038 Sum_probs=33.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++|+..|. |.-|+.+|..++.+|.++++ +.... .+....+.+|++++
T Consensus 203 ktVvViG~--G~IG~~va~~ak~~Ga~ViV-~d~d~----------~R~~~A~~~G~~~~ 249 (413)
T cd00401 203 KVAVVAGY--GDVGKGCAQSLRGQGARVIV-TEVDP----------ICALQAAMEGYEVM 249 (413)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEE-EECCh----------hhHHHHHhcCCEEc
Confidence 45666665 89999999999999997544 43321 24667778888653
No 161
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=45.83 E-value=18 Score=30.03 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.1
Q ss_pred EecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 99 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 99 Vt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
+.+|+ |.-++++|..++.+|++++++=|..
T Consensus 2 ~I~Ga--G~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGA--GHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES---STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEEeC--cHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 34565 7889999999999999999997764
No 162
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=45.09 E-value=2.2e+02 Score=25.17 Aligned_cols=159 Identities=13% Similarity=0.020 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc----ccCCCCCccchH--H-HHHhC-CC-EEE
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV----LVDQDPGLIGNL--L-VERLV-GA-HIE 155 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~----~~~~~p~~~~n~--~-~~r~~-GA-eV~ 155 (315)
.++..++.++++.+|... ..++........++..|++++.+-+.... ....+....+.. . +.+.+ |. ++.
T Consensus 48 ~~i~~l~~~~vdgiIi~~-~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~ 126 (275)
T cd06320 48 SIAENMINKGYKGLLFSP-ISDVNLVPAVERAKKKGIPVVNVNDKLIPNATAFVGTDNKANGVRGAEWIIDKLAEGGKVA 126 (275)
T ss_pred HHHHHHHHhCCCEEEECC-CChHHhHHHHHHHHHCCCeEEEECCCCCCccceEEecCcHHHHHHHHHHHHHHhCCCceEE
Confidence 345566677899887643 22333334455667899999877432211 000010001111 1 22222 43 665
Q ss_pred EEcC-CcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 156 LISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 156 ~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
++.. .... ....+.+...+.+++. +..-++.....+.....++ ....++.++- .++|.||+. +...+
T Consensus 127 ~l~~~~~~~--~~~~r~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~------~~~~ai~~~--~d~~a 194 (275)
T cd06320 127 IIEGKAGAF--AAEQRTEGFTEAIKKA-SGIEVVASQPADWDREKAY-DVATTILQRN------PDLKAIYCN--NDTMA 194 (275)
T ss_pred EEeCCCCCc--cHHHHHHHHHHHHhhC-CCcEEEEecCCCccHHHHH-HHHHHHHHhC------CCccEEEEC--CchhH
Confidence 5532 1111 1122333344445544 1121121111111111222 2233333321 357777655 55667
Q ss_pred HHHHHHHhcCCC--CCeEEEEecc
Q 021235 235 AGLSLGSWLGTL--KAKVHAFSVC 256 (315)
Q Consensus 235 aGl~~~~k~~~~--~~rVigV~~~ 256 (315)
.|+..++++.+. ++.|+|++-.
T Consensus 195 ~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 195 LGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCC
Confidence 789999988765 6677776654
No 163
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=44.79 E-value=1.8e+02 Score=26.60 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=51.1
Q ss_pred HHHHHHHh--CCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEE
Q 021235 174 LKEKLLKE--GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVH 251 (315)
Q Consensus 174 ~~~~l~~~--~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVi 251 (315)
+.+++++. -+.++++|....+..........+.+...++- +.+. ++++|.|.|+.-++..+.. .+...+.
T Consensus 9 Le~~L~~~fgLk~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l------~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~ 80 (255)
T PF04198_consen 9 LEEELKEKFGLKEVIVVPSPSDDEDILESLGEAAAEYLSELL------KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVT 80 (255)
T ss_dssp HHHHHHHHHTSSEEEEESSSTTTHHHHHHHHHHHHHHHHHH--------TTE-EEEE-TSHHHHHHHHTS---SSSSCEE
T ss_pred HHHHHHHHhCCCEEEEecCCCChHHHHHHHHHHHHHHHHHhC------CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcE
Confidence 34445543 24577888665433333333344444444432 2333 8999999999999998876 4455667
Q ss_pred EEeccCCchh----h-HHHHHHHHhhhcC
Q 021235 252 AFSVCDDPDY----F-YDYTQGLLDGLNA 275 (315)
Q Consensus 252 gV~~~g~~~~----~-~~~i~~l~~g~~~ 275 (315)
-|+..|+... . ..-+.+++..++.
T Consensus 81 vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~ 109 (255)
T PF04198_consen 81 VVPLIGGVGNSNSYQANEIARRLAEKLGG 109 (255)
T ss_dssp EEESBSBTTTSSGGSHHHHHHHHHHHHTS
T ss_pred EEECCCCCCCCCCcCHHHHHHHHHHHhCC
Confidence 7787775331 1 2233456666664
No 164
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=44.06 E-value=1.7e+02 Score=29.18 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=44.0
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCe-EEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHH
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLD-CYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 175 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~-~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~ 175 (315)
.|+..+|++ +|+-..++.+-=+ -+|++.. |...+-+..++.+|++++-|+.+ ++.-..+.+++.
T Consensus 157 ~IiiT~G~q----~al~l~~~~l~~pGd~v~vE~--------PtY~~~~~~~~~~g~~~~~vp~d--~~G~~~e~le~~- 221 (459)
T COG1167 157 QIVITSGAQ----QALDLLLRLLLDPGDTVLVED--------PTYPGALQALEALGARVIPVPVD--EDGIDPEALEEA- 221 (459)
T ss_pred eEEEeCCHH----HHHHHHHHHhCCCCCEEEEcC--------CCcHHHHHHHHHcCCcEEecCCC--CCCCCHHHHHHH-
Confidence 454444544 4555666665444 3344332 22345688999999999998753 111122333332
Q ss_pred HHHHHhCCC-cEEeCCCCCchhhH
Q 021235 176 EKLLKEGRR-PYVIPVGGSNSIGT 198 (315)
Q Consensus 176 ~~l~~~~~~-~y~ip~g~~n~~~~ 198 (315)
+++...+ .|++|. +.||.+.
T Consensus 222 --~~~~~~k~~y~~P~-~qNPtG~ 242 (459)
T COG1167 222 --LAQWKPKAVYVTPT-FQNPTGV 242 (459)
T ss_pred --HhhcCCcEEEECCC-CCCCCCC
Confidence 3322223 466664 4677653
No 165
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.04 E-value=2.3e+02 Score=25.02 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=73.3
Q ss_pred HHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc-----ccCCCCCccchH---HHHHhC-----C-
Q 021235 86 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV-----LVDQDPGLIGNL---LVERLV-----G- 151 (315)
Q Consensus 86 ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~-----~~~~~p~~~~n~---~~~r~~-----G- 151 (315)
.+..+...+.+.+|..+ ..++........++..|++.+++-..... ....+....++. .+.+.+ |
T Consensus 47 ~i~~~~~~~~dgiii~~-~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~ 125 (277)
T cd06319 47 NLRTAIDKGVSGIIISP-TNSSAAVTLLKLAAQAKIPVVIADIGAEGGDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWAD 125 (277)
T ss_pred HHHHHHhcCCCEEEEcC-CchhhhHHHHHHHHHCCCCEEEEecCCCCCceEEEEeeccHHHHHHHHHHHHHHHHhhCCCC
Confidence 45556677889887643 33444445556677889999877532111 010010000111 122221 2
Q ss_pred CEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEe-CCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCc
Q 021235 152 AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI-PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGS 230 (315)
Q Consensus 152 AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~i-p~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGt 230 (315)
.++.++.... .......+.+...+.+++.+.....+ ..+..+. ..++ ....++.++- .++|.||+..
T Consensus 126 ~~i~~i~~~~-~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~------~~~~ai~~~~-- 193 (277)
T cd06319 126 GKVGMVAIPQ-KRKNGQKRTKGFKEAMKEAGCDLAGIRQQKDFSY--QETF-DYTNDLLTAN------PDIRAIWLQG-- 193 (277)
T ss_pred CcEEEEeccC-CCccHHHHHHHHHHHHHhcCCceEeeccCCCCCH--HHHH-HHHHHHHHhC------CCCCEEEECC--
Confidence 3565554211 10011123333344455443221111 1111111 2333 2333443332 3578887754
Q ss_pred hhhHHHHHHHHhcCCC--CCeEEEEec
Q 021235 231 GGTIAGLSLGSWLGTL--KAKVHAFSV 255 (315)
Q Consensus 231 GGt~aGl~~~~k~~~~--~~rVigV~~ 255 (315)
...+.|+..++++.+. ++.|+|++-
T Consensus 194 d~~a~g~~~al~~~g~~~di~vvg~d~ 220 (277)
T cd06319 194 SDRYQGALDAIATAGKTGKVLLICFDA 220 (277)
T ss_pred CccchHHHHHHHHcCCCCCEEEEEcCC
Confidence 3446799999988764 466777765
No 166
>PRK12831 putative oxidoreductase; Provisional
Probab=44.02 E-value=79 Score=31.61 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=37.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
+.|+..|| ||.|.-+|..+.++|.+++++.+...... +.....+..++..|.+++.
T Consensus 282 k~VvVIGg--G~va~d~A~~l~r~Ga~Vtlv~r~~~~~m---~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 282 KKVAVVGG--GNVAMDAARTALRLGAEVHIVYRRSEEEL---PARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred CeEEEECC--cHHHHHHHHHHHHcCCEEEEEeecCcccC---CCCHHHHHHHHHcCCEEEe
Confidence 45666777 89999999999999999888876542111 1111223445667877654
No 167
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=44.02 E-value=1.7e+02 Score=28.27 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=33.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
+.|+..||+ |--|.++...|+.+|+ ++++.-.+. .++++.+.+||+-+.
T Consensus 159 ~~vLv~ggs-ggVG~~aiQlAk~~~~-~~v~t~~s~----------e~~~l~k~lGAd~vv 207 (347)
T KOG1198|consen 159 KSVLVLGGS-GGVGTAAIQLAKHAGA-IKVVTACSK----------EKLELVKKLGADEVV 207 (347)
T ss_pred CeEEEEeCC-cHHHHHHHHHHHhcCC-cEEEEEccc----------chHHHHHHcCCcEee
Confidence 456656654 6788899999999993 333322221 368999999998665
No 168
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=43.93 E-value=56 Score=29.22 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=31.9
Q ss_pred HHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 91 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
+++|+++||.+|-+.-.-..++|.-|..+|++++++-+...
T Consensus 147 r~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 147 RARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred HHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 46899999988755444445788899999999999987654
No 169
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.62 E-value=2.2e+02 Score=24.80 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=26.2
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEecc
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVC 256 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~~ 256 (315)
.+|+||++. ..++.|+..++++.+. ++.|+|++-.
T Consensus 178 ~~~ai~~~~--d~~a~g~~~~l~~~g~~vp~di~v~g~d~~ 216 (267)
T cd06283 178 KKTAIFAAN--GLILLEVLKALKELGIRIPEDVGLIGFDDT 216 (267)
T ss_pred CCCEEEEcC--cHHHHHHHHHHHHcCCCCccceEEEEeCCc
Confidence 589999874 5667789999987763 5678888743
No 170
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=43.28 E-value=64 Score=30.04 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=33.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++..|+.+|.+-++++.... .+...++.+|++.++
T Consensus 165 ~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~----------~~~~~~~~~ga~~~i 213 (339)
T cd08239 165 DTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSP----------ERLELAKALGADFVI 213 (339)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHhCCCEEE
Confidence 45544553 78999999999999999444443322 256777889996554
No 171
>PRK05867 short chain dehydrogenase; Provisional
Probab=43.15 E-value=1.9e+02 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=22.0
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
.+|| |+ +|.-|.++|..-.+.|.+++++-+
T Consensus 12 vlVt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 12 ALIT-GA-STGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCEEEEEcC
Confidence 3454 54 468899999999999998766644
No 172
>PRK06202 hypothetical protein; Provisional
Probab=43.13 E-value=30 Score=30.86 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCc
Q 021235 221 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 221 ~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~ 259 (315)
...+=+++|+|....-++...+..+++.+|+||+.....
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~ 100 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRA 100 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHH
Confidence 356778888888777676666666788899999997643
No 173
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=43.05 E-value=25 Score=30.79 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=34.1
Q ss_pred EEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHH
Q 021235 224 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQ 267 (315)
Q Consensus 224 ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~ 267 (315)
-++-+|||+-+=|+..++.. |+.+++-||+.+....+.+++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~ 92 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVV 92 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHH
T ss_pred eEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHH
Confidence 49999999999999999874 9999999999987654444433
No 174
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=42.86 E-value=1.5e+02 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCC----EEEecCCchh--HHHHHHHHHHHHcCCe---EEEEecCCC
Q 021235 82 KLEFLMADAVAQGAD----CIITIGGIQS--NHCRAAAVAAKYLNLD---CYLILRTSK 131 (315)
Q Consensus 82 ~l~~ll~~a~~~G~~----~vVt~g~s~G--Nhg~alA~aa~~lGl~---~~ivvp~~~ 131 (315)
.+..++..+++.|.. ++++-||.+| +|..++.-.|++.|++ .|+|++.+.
T Consensus 93 ~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD 151 (501)
T TIGR01307 93 ALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRD 151 (501)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCC
Confidence 455567777665532 4667777665 8999999999999995 677887654
No 175
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=42.66 E-value=86 Score=29.19 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| .|..|++++..|+.+|.+.+++.+.. .+...++.+|++-++
T Consensus 165 ~~vlV~g--~g~iG~~~~~~a~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~i 212 (333)
T cd08296 165 DLVAVQG--IGGLGHLAVQYAAKMGFRTVAISRGS-----------DKADLARKLGAHHYI 212 (333)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHCCCeEEEEeCCh-----------HHHHHHHHcCCcEEe
Confidence 5666665 38999999999999999855543321 256777889986444
No 176
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=42.64 E-value=1.3e+02 Score=29.18 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 172 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 172 ~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
+++.+.+++.+-...+......||.. +...|+.+++.+ .++| +|+++|+|..+
T Consensus 48 ~~v~~~L~~~g~~~~~~~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIaiGGGS~i 100 (382)
T PRK10624 48 AKVTDVLDAAGLAYEIYDGVKPNPTI-----EVVKEGVEVFKA----SGAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcCH-----HHHHHHHHHHHh----cCCC-EEEEeCChHHH
Confidence 44455565544332222222234431 233445455442 2466 67888887654
No 177
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=42.51 E-value=2.8e+02 Score=25.72 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCeEEecCCcccchHHHHHHHHHhcC
Q 021235 262 FYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNG 305 (315)
Q Consensus 262 ~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~~~ 305 (315)
..+.+..+++.++.. .+.++++-+ .|.+....++.|.++-+
T Consensus 140 ~~~~~~~~l~~~~~~--~~~~~~~G~-~G~~~~~K~~~n~l~~~ 180 (298)
T TIGR00872 140 AFARAEPLFADVAPE--EQGYLYCGP-CGSGHFVKMVHNGIEYG 180 (298)
T ss_pred HHHHHHHHHHHhcCc--CCCEEEECC-ccHhHHHHHHHHHHHHH
Confidence 345566677777652 235788876 48888888888877644
No 178
>PRK09206 pyruvate kinase; Provisional
Probab=42.49 E-value=3.7e+02 Score=27.23 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCeEEEEe---cCCCcccCCCCCc--cchHHHHHhCCCEEEEEcCC----cccccChHHHHHHHHHHHHH
Q 021235 110 RAAAVAAKYLNLDCYLIL---RTSKVLVDQDPGL--IGNLLVERLVGAHIELISKE----EYSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivv---p~~~~~~~~~p~~--~~n~~~~r~~GAeV~~v~~~----~~~~~~~~~~~~~~~~~l~~ 180 (315)
.-+...|+++|.++++-. .+-... +.|+. ..-+.-.-.-|++-+..+.+ .|-. ...+.+.+++++.++
T Consensus 261 k~ii~~~~~~gkpvI~ATqmLeSM~~n--p~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPv-eaV~~m~~I~~~~E~ 337 (470)
T PRK09206 261 KMMIEKCNRARKVVITATQMLDSMIKN--PRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPL-EAVSIMATICERTDR 337 (470)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhC--CCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHH-HHHHHHHHHHHHHHh
Confidence 456788999999988843 211110 01221 12244444569998887643 2321 123344555544433
Q ss_pred hCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 181 EGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 181 ~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
..+..+..................+.++.+.+ +.++||+.+=||.|+--++++ .|...|+++.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l-------~a~aIv~~T~sG~tA~~is~~----RP~~pIia~t~~ 402 (470)
T PRK09206 338 VMNSRLESNNDNRKLRITEAVCRGAVETAEKL-------DAPLIVVATQGGKSARSVRKY----FPDATILALTTN 402 (470)
T ss_pred hcchhhhhhccccCCChHHHHHHHHHHHHhcC-------CCCEEEEECCCcHHHHHHHhh----CCCCCEEEECCC
Confidence 21111111110100111233334566666665 378999999999998777653 478888888765
No 179
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.43 E-value=71 Score=30.13 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=34.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |-.|.+++.+|+.+|.+.+ ++.... .++..++.+|++.++
T Consensus 168 ~~VlV~G~--G~vG~~a~~~a~~~G~~vi-~~~~~~----------~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 168 DLVIVIGA--GGVGGYMVQTAKAMGAAVV-AIDIDP----------EKLEMMKGFGADLTL 215 (349)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCeEE-EEcCCH----------HHHHHHHHhCCceEe
Confidence 46666654 8899999999999999743 333221 257788889997654
No 180
>PRK08643 acetoin reductase; Validated
Probab=42.10 E-value=2.2e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=21.6
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+|+ |+ +|--|.++|....+.|.+.+++.+
T Consensus 6 lIt-Ga-s~giG~~la~~l~~~G~~v~~~~r 34 (256)
T PRK08643 6 LVT-GA-GQGIGFAIAKRLVEDGFKVAIVDY 34 (256)
T ss_pred EEE-CC-CChHHHHHHHHHHHCCCEEEEEeC
Confidence 443 54 467999999999999998766644
No 181
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=42.06 E-value=62 Score=26.94 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc
Q 021235 91 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
++.|.++|+.+|-....--.++|.-|..+|++++++.+....
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~s 136 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACAT 136 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEecccccC
Confidence 467889998887655555668899999999999998766543
No 182
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=41.95 E-value=23 Score=32.29 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=47.1
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCc---hh----------hHHHHHHHHhhhcCCC-CCCCeEEe
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP---DY----------FYDYTQGLLDGLNAGV-DSRDIVNI 285 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~---~~----------~~~~i~~l~~g~~~~~-~~~dvv~v 285 (315)
.-|.|++..|+.|+.+.-..+- ..|+.+|.-++..-++ .+ .++..+-+++++++.. .-+|+|.|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~--~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYedegdYVVV 153 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAK--NRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDEGDYVVV 153 (328)
T ss_pred ccceEEECCCccccceeeeeec--cCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccCCCEEEE
Confidence 4699999999998876544443 3588888877765332 12 2555666899999853 44677777
Q ss_pred cCCccc
Q 021235 286 QNVSVY 291 (315)
Q Consensus 286 ~e~~~~ 291 (315)
--...+
T Consensus 154 KHAALF 159 (328)
T KOG2960|consen 154 KHAALF 159 (328)
T ss_pred eeHHHH
Confidence 665443
No 183
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=41.94 E-value=1.5e+02 Score=28.38 Aligned_cols=58 Identities=28% Similarity=0.255 Sum_probs=31.8
Q ss_pred HHHcCCCEEEecCCchhHHH-----------HHHHHHHHHcCCeEEEEecCCCcccCCCCCccch-HHHHHhCCCEEEEE
Q 021235 90 AVAQGADCIITIGGIQSNHC-----------RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIELI 157 (315)
Q Consensus 90 a~~~G~~~vVt~g~s~GNhg-----------~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n-~~~~r~~GAeV~~v 157 (315)
|.+.|+++||. |||| -+|.-.-+..+=+..++++.... .|+ +...-++||+-+++
T Consensus 240 Ave~G~~GIIV-----SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR--------~G~DVlKALALGAk~Vfi 306 (363)
T KOG0538|consen 240 AVEAGVAGIIV-----SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVR--------RGTDVLKALALGAKGVFI 306 (363)
T ss_pred HHHhCCceEEE-----eCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcc--------cchHHHHHHhcccceEEe
Confidence 44566666663 4665 23444444455556666666552 122 55556667777777
Q ss_pred cCC
Q 021235 158 SKE 160 (315)
Q Consensus 158 ~~~ 160 (315)
+++
T Consensus 307 GRP 309 (363)
T KOG0538|consen 307 GRP 309 (363)
T ss_pred cCc
Confidence 653
No 184
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.20 E-value=2.7e+02 Score=25.15 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=23.5
Q ss_pred CEEEecCCch-hHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~-GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..||| |+++ +.-|+++|...++.|.+++++-+
T Consensus 9 ~~lVT-Gas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 9 RGLIM-GVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 34554 5553 37899999999999999877643
No 185
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=40.77 E-value=2.9e+02 Score=25.28 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=7.2
Q ss_pred HHHHHhCCCEEEEEc
Q 021235 144 LLVERLVGAHIELIS 158 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~ 158 (315)
+..+...|+++++|+
T Consensus 150 ~~~I~~s~~dil~Vg 164 (243)
T PRK03692 150 FERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHhcCCCEEEEE
Confidence 344444455555554
No 186
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=40.72 E-value=2.2e+02 Score=25.09 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=22.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..+|| |+ +|.-|.++|....+.|.+++++-+
T Consensus 11 ~~lIt-Ga-s~giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 11 NILIT-GS-AQGIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred EEEEE-CC-CChHHHHHHHHHHHcCCEEEEEcC
Confidence 34554 54 478999999999999987776543
No 187
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.55 E-value=2.8e+02 Score=25.09 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=23.1
Q ss_pred CEEEecCCc-hhHHHHHHHHHHHHcCCeEEEEe
Q 021235 96 DCIITIGGI-QSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 96 ~~vVt~g~s-~GNhg~alA~aa~~lGl~~~ivv 127 (315)
..+|| |++ ++--|.++|....+.|.+.++.-
T Consensus 12 ~~lIt-Gas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 12 RGLIL-GVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34454 554 46799999999999999876653
No 188
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=40.42 E-value=88 Score=28.06 Aligned_cols=46 Identities=24% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCCCCCeEE-EeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIV-VACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~iv-v~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
..+||.-+++ ||.|+ +++-.||.+.=.+.-++..+++.+|+||+..
T Consensus 23 ~~qeli~~~k-------Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 23 AYQELIWELK-------PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHhC-------CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 3467777764 77776 5666788877666667777899999999994
No 189
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=40.42 E-value=2.1e+02 Score=26.39 Aligned_cols=43 Identities=7% Similarity=-0.010 Sum_probs=25.4
Q ss_pred hHHHHHHHHhcC-CCCCeEEEEeccCCc-------------hhhHHHHHHHHhhhcC
Q 021235 233 TIAGLSLGSWLG-TLKAKVHAFSVCDDP-------------DYFYDYTQGLLDGLNA 275 (315)
Q Consensus 233 t~aGl~~~~k~~-~~~~rVigV~~~g~~-------------~~~~~~i~~l~~g~~~ 275 (315)
.+..++++++.+ +..-.++...-.|+. ..+...+.-++..+|.
T Consensus 122 S~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~ 178 (259)
T COG0623 122 SFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVAKAALEASVRYLAADLGK 178 (259)
T ss_pred hHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHHHHHHHHHHHHHHHHHhCc
Confidence 456677777653 445566666666652 1245555667777775
No 190
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=40.15 E-value=1.7e+02 Score=28.74 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=8.9
Q ss_pred CCCeEEEeCCchhhH
Q 021235 220 KFDDIVVACGSGGTI 234 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~ 234 (315)
++| +|+++|+|..+
T Consensus 106 ~~D-~IiavGGGS~i 119 (395)
T PRK15454 106 GCD-GVIAFGGGSVL 119 (395)
T ss_pred CcC-EEEEeCChHHH
Confidence 354 56788877654
No 191
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.77 E-value=2.9e+02 Score=24.96 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=21.7
Q ss_pred CEEEecCCch-hHHHHHHHHHHHHcCCeEEEEe
Q 021235 96 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 96 ~~vVt~g~s~-GNhg~alA~aa~~lGl~~~ivv 127 (315)
..||| |+++ +.-|+++|....+.|.+.++.-
T Consensus 8 ~~lIT-Gas~~~GIG~aia~~la~~G~~vil~~ 39 (262)
T PRK07984 8 RILVT-GVASKLSIAYGIAQAMHREGAELAFTY 39 (262)
T ss_pred EEEEe-CCCCCccHHHHHHHHHHHCCCEEEEEe
Confidence 34454 5543 3688899999999999876553
No 192
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=39.75 E-value=1.6e+02 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
...|+.+++.+ .++| +|+++|+|..+
T Consensus 71 ~v~~~~~~~~~----~~~D-~IIaiGGGs~i 96 (376)
T cd08193 71 VVEAAVEAARA----AGAD-GVIGFGGGSSM 96 (376)
T ss_pred HHHHHHHHHHh----cCCC-EEEEeCCchHH
Confidence 34455555543 3465 67888887654
No 193
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=39.69 E-value=47 Score=28.70 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 101 IGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 101 ~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
.|+ |..|.++|+.++..|++++++-+.
T Consensus 5 iGa--G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGA--GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES---SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 365 899999999999999999999654
No 194
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=39.63 E-value=43 Score=28.39 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=27.4
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
|...|-..+|.+++++.+++++|+.++++.|..
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 444454458999999999999999999998877
No 195
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=39.62 E-value=36 Score=32.94 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=22.0
Q ss_pred EecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 99 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 99 Vt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|..|+ |..|.+.|..|++.|.+++++=..
T Consensus 3 vVIG~--G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 3 VVIGG--GLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEE-S--SHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEECC--CHHHHHHHHHHhhhcCeEEEEEee
Confidence 33566 899999999999999988887543
No 196
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=39.61 E-value=1e+02 Score=29.91 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=34.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++|+..|+ |--|++++..|+.+|.+.+++..... .+..+.+.+||+.+
T Consensus 187 ~~VlV~G~--G~iG~~aiqlAk~~Ga~~vi~~d~~~----------~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYIAGA--GPVGLAAAASAQLLGAAVVIVGDLNP----------ARLAQARSFGCETV 234 (393)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCH----------HHHHHHHHcCCeEE
Confidence 45554443 78899999999999998777543321 36888899999853
No 197
>PRK08278 short chain dehydrogenase; Provisional
Probab=39.42 E-value=2.5e+02 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=24.4
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
+++..|+ +|--|.++|....+.|.+++++.+..
T Consensus 8 ~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 8 TLFITGA-SRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEeccc
Confidence 3443454 46889999999999999888776543
No 198
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=39.41 E-value=2.9e+02 Score=24.99 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCC-CccchH--------HHHHhC--CC
Q 021235 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP-GLIGNL--------LVERLV--GA 152 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p-~~~~n~--------~~~r~~--GA 152 (315)
...+..+++++++.||..+ ............++..|++++.+-....+...... ....+. .+++.+ +.
T Consensus 46 ~~~i~~l~~~~vdgiIi~~-~~~~~~~~~l~~~~~~giPvV~~~~~~~~~~~~~~v~~~Dn~~~g~~aa~~l~~~l~~~~ 124 (302)
T TIGR02637 46 IEVVNSLIAQKVDAIAISA-NDPDALVPALKKAMKRGIKVVTWDSGVAPEGRNLFLNQASADLIGRTQVQLAAEQIGNGG 124 (302)
T ss_pred HHHHHHHHHcCCCEEEEeC-CChHHHHHHHHHHHHCCCEEEEeCCCCCCCceeEEEecCCHHHHHHHHHHHHHHHcCCCc
Confidence 3456777788999988653 22222233334467789998877532211000000 000121 233333 24
Q ss_pred EEEEEcCCcccccChHHHHHHHHHHHHHhC-CCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCch
Q 021235 153 HIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 231 (315)
Q Consensus 153 eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~-~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 231 (315)
+|.++.... .......+.+...+.+.+.+ +...++.....+.....++ ....+++++ ..++|.||++. .
T Consensus 125 ~I~~i~g~~-~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~------~~~~~ai~~~~--d 194 (302)
T TIGR02637 125 EIAILSAAS-TATNQNAWIEIMKKELKDPKYPKVKLVATVYGDDDAQKSY-QEAQGLLKS------YPNLKGIIAPT--T 194 (302)
T ss_pred EEEEEECCC-CCccHHHHHHHHHHHHhhccCCCCEEEeeecCCchHHHHH-HHHHHHHHh------CCCccEEEeCC--C
Confidence 776664321 11111122232333333321 1222221111112222233 233344332 24689999854 4
Q ss_pred hhHHHHHHHHhcCCC--CCeEEEEec
Q 021235 232 GTIAGLSLGSWLGTL--KAKVHAFSV 255 (315)
Q Consensus 232 Gt~aGl~~~~k~~~~--~~rVigV~~ 255 (315)
..+.|+..++++.+. ++.|+|++.
T Consensus 195 ~~a~ga~~al~~~g~~~~i~vvg~d~ 220 (302)
T TIGR02637 195 VGIKAAAQAVSDAKLIGKVKLTGLGL 220 (302)
T ss_pred chHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 556778888887653 567777764
No 199
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=39.35 E-value=85 Score=29.44 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=35.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| . |..|++++..|+.+|.+.++++.... .+...++.+|++-++
T Consensus 162 ~~vlV~G-~-g~vG~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 162 KNVIIIG-A-GTIGLLAIQCAVALGAKSVTAIDINS----------EKLALAKSLGAMQTF 210 (347)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEECCCH----------HHHHHHHHcCCceEe
Confidence 4555555 3 77999999999999998665554332 256778889997544
No 200
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=39.34 E-value=3.6e+02 Score=26.01 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=5.8
Q ss_pred eEEEeCCchhh
Q 021235 223 DIVVACGSGGT 233 (315)
Q Consensus 223 ~ivv~vGtGGt 233 (315)
.+|+++|+|..
T Consensus 86 ~~IIAvGGGsv 96 (355)
T cd08197 86 SVIVALGGGVV 96 (355)
T ss_pred cEEEEECCcHH
Confidence 45555655443
No 201
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.34 E-value=4.1e+02 Score=26.60 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHHHHH----c---------CCCEEEecCCchh----HHHHHHHHHHHHcCCeEEEEecCCCcccCCCC
Q 021235 76 SGNKVRKLEFLMADAVA----Q---------GADCIITIGGIQS----NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP 138 (315)
Q Consensus 76 gg~K~R~l~~ll~~a~~----~---------G~~~vVt~g~s~G----Nhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p 138 (315)
|-||.|-...++-+.+. . +...||.+-|-|| ..|--+|++=++.|++|-+++-..-.
T Consensus 68 G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR------ 141 (483)
T KOG0780|consen 68 GVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR------ 141 (483)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc------
Confidence 56888876665544321 1 2234554333433 46888999999999999999865431
Q ss_pred CccchHHHHHhCC--CEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCC
Q 021235 139 GLIGNLLVERLVG--AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGT 216 (315)
Q Consensus 139 ~~~~n~~~~r~~G--AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~ 216 (315)
.+-...++..+ +.|-+++ .|.+.+......+-.+++.+++-...++-..|.+.. -..+..|+.+-...
T Consensus 142 --agAfDQLkqnA~k~~iP~yg--syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~q----e~sLfeEM~~v~~a-- 211 (483)
T KOG0780|consen 142 --AGAFDQLKQNATKARVPFYG--SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQ----EASLFEEMKQVSKA-- 211 (483)
T ss_pred --cchHHHHHHHhHhhCCeeEe--cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhh----hHHHHHHHHHHHhh--
Confidence 23455555554 3344443 355554434444455667776544444432222211 12467776443332
Q ss_pred CCCCCCe--EEEeCCchhhHHHHHHHHhcC
Q 021235 217 GGVKFDD--IVVACGSGGTIAGLSLGSWLG 244 (315)
Q Consensus 217 ~~~~~D~--ivv~vGtGGt~aGl~~~~k~~ 244 (315)
..||- +|+.++.|-.+.-.+++|++.
T Consensus 212 --i~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 212 --IKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred --cCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 34654 567888999999999999963
No 202
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=39.12 E-value=83 Score=29.93 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=34.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |.-|++++..|+.+|.+-++.+.... .+...++.+||+.++
T Consensus 188 ~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~----------~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINP----------DKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCCEEE
Confidence 45555553 78999999999999995445443322 257778889997554
No 203
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=38.97 E-value=3.8e+02 Score=26.10 Aligned_cols=71 Identities=15% Similarity=0.053 Sum_probs=41.5
Q ss_pred CCeEEEEeCCCC-CCCCchhHHHHHH--HHHHHHH-HcCCCEEEec-CCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 60 NTEVWLKRDDLS-GMQLSGNKVRKLE--FLMADAV-AQGADCIITI-GGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 60 g~~v~vKrEdl~-~~~~gg~K~R~l~--~ll~~a~-~~G~~~vVt~-g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
|+.+ +|.+-.+ ...+-.++.|... ..+.++. +.|...++.. .+....-.+..|..|+..|..++++.+...
T Consensus 159 GvD~-Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 159 GIDL-IKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred CCCe-eeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 4544 5555433 2235667777643 3344443 2354433321 122347888999999999999999887644
No 204
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=38.96 E-value=2.1e+02 Score=27.52 Aligned_cols=45 Identities=13% Similarity=-0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch---HHHHHhCCCEEEEEcC
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISK 159 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n---~~~~r~~GAeV~~v~~ 159 (315)
..++=..|++.|.++++++.++.|. ..|. ...+...|-++.++.+
T Consensus 167 al~~l~~A~~~g~~~~V~v~EsrP~------~qG~rlta~~L~~~GI~vtlI~D 214 (331)
T TIGR00512 167 ALGVIRSAHEKGRLEHVYADETRPR------LQGARLTAWELVQEGIPATLITD 214 (331)
T ss_pred HHHHHHHHHHcCCceEEEECCCCch------hhHHHHHHHHHHHCCCCEEEEcc
Confidence 3444455667788888888776643 1232 2345566777777665
No 205
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=38.93 E-value=95 Score=28.09 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHcCC--CEEE-e-cCCchhHHHHHHHHHHHHcCCeEEEEecCCCc
Q 021235 90 AVAQGA--DCII-T-IGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 90 a~~~G~--~~vV-t-~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
|++.|. +-+| + ++++..-+.+|||.+|++-|=+.++++|+...
T Consensus 35 AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~ 81 (218)
T PF07279_consen 35 ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS 81 (218)
T ss_pred HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh
Confidence 556663 4444 2 22222346899999999999999999998653
No 206
>PRK09330 cell division protein FtsZ; Validated
Probab=38.87 E-value=99 Score=30.42 Aligned_cols=79 Identities=16% Similarity=0.072 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCC-chhhHHHHHHHH----hcCCCCCeEEEEeccCCchhhHHHHHHHHhhhcC-CC
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA-GV 277 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl~~~~----k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g~~~-~~ 277 (315)
...||.+++. ..|.||+.+| +|||=+|.+--+ |+++ .-+++|-+.........+...-..++.. ..
T Consensus 87 ~~e~I~~~l~------~~D~vfI~AGmGGGTGTGaapvIA~iake~g--~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~ 158 (384)
T PRK09330 87 SREEIREALE------GADMVFITAGMGGGTGTGAAPVVAEIAKELG--ILTVAVVTKPFSFEGKKRMKQAEEGIEELRK 158 (384)
T ss_pred HHHHHHHHHc------CCCEEEEEecCCCcccHHHHHHHHHHHHHcC--CcEEEEEecCccccchhHHHHHHHHHHHHHH
Confidence 3445555553 4799999888 456655555433 3433 5677777754322222222222222221 12
Q ss_pred CCCCeEEecCCcc
Q 021235 278 DSRDIVNIQNVSV 290 (315)
Q Consensus 278 ~~~dvv~v~e~~~ 290 (315)
.+|-++.+++.+.
T Consensus 159 ~~D~vIvi~Nd~L 171 (384)
T PRK09330 159 HVDTLIVIPNDKL 171 (384)
T ss_pred HCCEEEEEecHHH
Confidence 4566777776544
No 207
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=38.84 E-value=1.6e+02 Score=28.38 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 205 IKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 205 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
..|+.++..+ .++|. |+++|+|..+
T Consensus 70 v~~~~~~~~~----~~~d~-IIaiGGGSvi 94 (370)
T cd08192 70 VEAGLAAYRA----GGCDG-VIAFGGGSAL 94 (370)
T ss_pred HHHHHHHHHh----cCCCE-EEEeCCchHH
Confidence 3455555543 24554 6788887653
No 208
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.81 E-value=55 Score=23.46 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecC
Q 021235 106 SNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 106 GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|=.|.+.|+..++.|++++|+=..
T Consensus 5 G~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 5 GISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CHHHHHHHHHHHHCCCcEEEEecC
Confidence 567999999999999998888433
No 209
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=38.76 E-value=2.7e+02 Score=24.35 Aligned_cols=157 Identities=20% Similarity=0.191 Sum_probs=79.9
Q ss_pred HHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccC-CC-------CC--ccc--hHHHHHhCC--C
Q 021235 87 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVD-QD-------PG--LIG--NLLVERLVG--A 152 (315)
Q Consensus 87 l~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~-~~-------p~--~~~--n~~~~r~~G--A 152 (315)
+.+..+++++.||. ..++....+++..+...|++.+.+........+ .. +. ... -...++..| .
T Consensus 59 ~~~l~~~~v~~iig--~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (298)
T cd06268 59 ARELVDDGVDAVIG--PLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVK 136 (298)
T ss_pred HHHHHhCCceEEEc--CCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCC
Confidence 45555668877773 333445567788899999988765432211000 00 00 001 123344444 4
Q ss_pred EEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCch
Q 021235 153 HIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 231 (315)
Q Consensus 153 eV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 231 (315)
+|.++... .+. ....+...+.+++.+... ......+. ....+.....+|.+ ..+|.|++. +.+
T Consensus 137 ~i~~v~~~~~~~----~~~~~~~~~~~~~~g~~i--~~~~~~~~-~~~~~~~~~~~l~~--------~~~~~vi~~-~~~ 200 (298)
T cd06268 137 KVAIIYDDYAYG----RGLAAAFREALKKLGGEV--VAEETYPP-GATDFSPLIAKLKA--------AGPDAVFLA-GYG 200 (298)
T ss_pred EEEEEEcCCchh----HHHHHHHHHHHHHcCCEE--EEEeccCC-CCccHHHHHHHHHh--------cCCCEEEEc-ccc
Confidence 66666432 221 123344444455544221 11110000 00112223333322 247777665 555
Q ss_pred hhHHHHHHHHhcCCCCCeEEEEeccCCchh
Q 021235 232 GTIAGLSLGSWLGTLKAKVHAFSVCDDPDY 261 (315)
Q Consensus 232 Gt~aGl~~~~k~~~~~~rVigV~~~g~~~~ 261 (315)
..+.++...++..+.++++++.+.......
T Consensus 201 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 230 (298)
T cd06268 201 GDAALFLKQAREAGLKVPIVGGDGAAAPAL 230 (298)
T ss_pred chHHHHHHHHHHcCCCCcEEecCccCCHHH
Confidence 788899999998888889998887765543
No 210
>PRK13018 cell division protein FtsZ; Provisional
Probab=38.71 E-value=59 Score=31.92 Aligned_cols=80 Identities=20% Similarity=0.087 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCC-chhhHHHHHHHH----hcCCCCCeEEEEeccCCchhhHHHHHHHHhhhcC-CCC
Q 021235 205 IKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA-GVD 278 (315)
Q Consensus 205 a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl~~~~----k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g~~~-~~~ 278 (315)
..||.+++. ..|.||+.+| +|||=+|.+..+ ++.+ ..+++|-+..-......+...-..++.. ...
T Consensus 103 ~d~I~~~le------~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~ 174 (378)
T PRK13018 103 RDEIKEVLK------GADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTKPFKFEGRARMQKAEEGIERLREA 174 (378)
T ss_pred HHHHHHHhc------CCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEcCcccccHhHHHHHHHHHHHHHHh
Confidence 345555553 4788888887 556666666544 3333 4566765554332222222222222222 124
Q ss_pred CCCeEEecCCcccc
Q 021235 279 SRDIVNIQNVSVYM 292 (315)
Q Consensus 279 ~~dvv~v~e~~~~~ 292 (315)
+|-++.+++.+...
T Consensus 175 ~D~vividNd~L~~ 188 (378)
T PRK13018 175 ADTVIVIDNNRLLD 188 (378)
T ss_pred CCEEEEEecHHHHH
Confidence 56677777665543
No 211
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.55 E-value=2.8e+02 Score=24.56 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=23.2
Q ss_pred EEEecCCch-hHHHHHHHHHHHHcCCeEEEEe
Q 021235 97 CIITIGGIQ-SNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 97 ~vVt~g~s~-GNhg~alA~aa~~lGl~~~ivv 127 (315)
+++..|++. +.-|.++|......|.++++..
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTY 39 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence 344346653 5899999999999999877753
No 212
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=38.54 E-value=1.2e+02 Score=29.25 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCC-C-EEEEEcCCcccccChHHHHHHHHHHHHHhCC
Q 021235 106 SNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-A-HIELISKEEYSKIGSVTLTNILKEKLLKEGR 183 (315)
Q Consensus 106 GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~G-A-eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (315)
|-.+..+.-.|+..|++.++|+...... .-+.|+ | +++++++ |.+ ....+++++|++.
T Consensus 26 SHSaL~Il~GAK~EGF~Ti~v~~~gr~~------------~Y~~f~~a~e~i~v~~--f~d----il~~~iqe~L~~~-- 85 (361)
T COG1759 26 SHSALQILDGAKEEGFRTIAVCQRGREK------------PYEKFPVADEVIIVDK--FSD----ILNEEIQEELREL-- 85 (361)
T ss_pred cchHHHHhhhHHhcCCcEEEEEecCccc------------hHHhhchhheEEEech--hHH----HhhHHHHHHHHHc--
Confidence 4568899999999999999999765421 122233 3 8888875 432 1224456667663
Q ss_pred CcEEeCCC
Q 021235 184 RPYVIPVG 191 (315)
Q Consensus 184 ~~y~ip~g 191 (315)
+..+||.+
T Consensus 86 n~I~IP~g 93 (361)
T COG1759 86 NAIFIPHG 93 (361)
T ss_pred CeEEecCC
Confidence 47788865
No 213
>PRK11440 putative hydrolase; Provisional
Probab=38.52 E-value=82 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=31.6
Q ss_pred HHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 91 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
++.|+++||.+|-....--.++|.-|..+|++++++.+...
T Consensus 117 ~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~a 157 (188)
T PRK11440 117 RRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 157 (188)
T ss_pred HHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhc
Confidence 35799999988655444456889999999999999877554
No 214
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=38.38 E-value=2.8e+02 Score=26.33 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=17.2
Q ss_pred eEEEeCCchhhH--HHHHHHHhcCCCCCeEEEEec
Q 021235 223 DIVVACGSGGTI--AGLSLGSWLGTLKAKVHAFSV 255 (315)
Q Consensus 223 ~ivv~vGtGGt~--aGl~~~~k~~~~~~rVigV~~ 255 (315)
.+|+++|+|..+ ++.+..... ..++++.|.+
T Consensus 83 d~IIavGGGsv~D~aK~iA~~~~--~~~p~i~VPT 115 (344)
T TIGR01357 83 STIIALGGGVVGDLAGFVAATYM--RGIRFIQVPT 115 (344)
T ss_pred CEEEEEcChHHHHHHHHHHHHHc--cCCCEEEecC
Confidence 577888877654 333322222 3456666666
No 215
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=38.37 E-value=1.3e+02 Score=27.52 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=33.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
.+|+..|+ .|--|++++..|+.+|.+.+++.+... +...++.+|++-++
T Consensus 141 ~~vlI~g~-~g~ig~~~~~~a~~~G~~v~~~~~~~~-----------~~~~~~~~g~~~~~ 189 (324)
T cd08292 141 QWLIQNAA-GGAVGKLVAMLAAARGINVINLVRRDA-----------GVAELRALGIGPVV 189 (324)
T ss_pred CEEEEccc-ccHHHHHHHHHHHHCCCeEEEEecCHH-----------HHHHHHhcCCCEEE
Confidence 45555554 477999999999999998766655432 34555668885443
No 216
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=38.30 E-value=3.3e+02 Score=25.20 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=29.3
Q ss_pred EEEecCCchhHHHHHHHHHHHHc-----------CCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYL-----------NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~l-----------Gl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.+++.||+.+|.-...+ +..++ |=+.+++++.... ......++.+|++++.++-
T Consensus 60 ~~~t~ggt~a~~~al~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~h--------~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 60 GVFTSGGSESNLLALLA-ARDRARKRLKAGGGRGIDKLVIVCSDQAH--------VSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred EEEeCChhHHHHHHHHH-HHHHhhhhhhcccccccCCeEEEEcCcch--------hHHHHHHHHHhcCeEEeee
Confidence 56777777766633322 22221 1234666665431 1234556667999888863
No 217
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=38.01 E-value=2.5e+02 Score=24.98 Aligned_cols=53 Identities=17% Similarity=0.011 Sum_probs=31.7
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+|| |+ ++.-|.++|......|.+++++-+.... ...-...++..|+++..+.
T Consensus 13 ~lIt-Ga-~~~iG~~ia~~l~~~G~~vv~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 13 ALIT-GA-SYGIGFAIAKAYAKAGATIVFNDINQEL-------VDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred EEEe-CC-CchHHHHHHHHHHHCCCeEEEEeCCHHH-------HHHHHHHHHhcCCceEEEE
Confidence 3454 44 4789999999999999987666322110 0112334455677766554
No 218
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=37.94 E-value=2e+02 Score=26.87 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCeEE--EEeCCCCCCCCchhHHHHHHHHHHHHHHc-C----CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 60 NTEVW--LKRDDLSGMQLSGNKVRKLEFLMADAVAQ-G----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 60 g~~v~--vKrEdl~~~~~gg~K~R~l~~ll~~a~~~-G----~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+.|+ .++|+.. .-|-.-.++..+..+++. + -+++...|. |+.|+++|..++.+|.+.+++-+
T Consensus 113 gi~v~~~~~~~~va----~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~--G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 113 GVKLIELFERDDVA----IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGF--GRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred CCeEEEEEeccceE----EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcC--hHHHHHHHHHHHHCCCEEEEEeC
Confidence 55444 5555542 123344555556555543 1 145555665 89999999999999987666543
No 219
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=37.89 E-value=90 Score=29.63 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=34.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++..|+.+|.+.++++.... .+...++.+|++.++
T Consensus 189 ~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~----------~~~~~~~~~Ga~~~i 237 (369)
T cd08301 189 STVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNP----------SKFEQAKKFGVTEFV 237 (369)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCceEE
Confidence 55655653 78999999999999995444443322 257788999997544
No 220
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=3.9e+02 Score=25.89 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=57.7
Q ss_pred hHHHHHhCCCEEEEEcCCccccc-----ChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCC
Q 021235 143 NLLVERLVGAHIELISKEEYSKI-----GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG 217 (315)
Q Consensus 143 n~~~~r~~GAeV~~v~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~ 217 (315)
++...-..||+.+.++...|... -..+-+++..+...+.|...|+.- |.....+-.....+..+++.+
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~----N~~~~~~~~~~~~~~l~~l~e--- 90 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAV----NTLLHNDELETLERYLDRLVE--- 90 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEe----ccccccchhhHHHHHHHHHHH---
Confidence 34445567999999984322111 112234556666666665555442 222222222234555666654
Q ss_pred CCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEE-EEecc
Q 021235 218 GVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVH-AFSVC 256 (315)
Q Consensus 218 ~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVi-gV~~~ 256 (315)
..+|.|+++= .|+....++.+|+.+|| .+++.
T Consensus 91 -~GvDaviv~D------pg~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 91 -LGVDAVIVAD------PGLIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred -cCCCEEEEcC------HHHHHHHHHhCCCCcEEEeeeEe
Confidence 3589999864 56777888889999988 44444
No 221
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=37.75 E-value=1.5e+02 Score=28.24 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCe--EEEEecCCCcccCCCCCccchHHHHHhCCCEE
Q 021235 77 GNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLD--CYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 154 (315)
Q Consensus 77 g~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~--~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV 154 (315)
|-..+.++.-+++ ..|...++.++ +|..+..+|+.+ +|++ -.|++|.-+. ......+...|+++
T Consensus 24 g~~~~~fE~~~a~--~~g~~~~~~~~--sgt~Al~~al~~--l~~~~gdeVi~p~~t~--------~~~~~ai~~~G~~p 89 (363)
T PF01041_consen 24 GPYVEEFEKEFAE--YFGVKYAVAVS--SGTSALHLALRA--LGLGPGDEVIVPAYTF--------PATASAILWAGAEP 89 (363)
T ss_dssp SHHHHHHHHHHHH--HHTSSEEEEES--SHHHHHHHHHHH--TTGGTTSEEEEESSS---------THHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHH--HhCCCeEEEeC--ChhHHHHHHHHh--cCCCcCceEecCCCcc--------hHHHHHHHHhccEE
Confidence 5667777666644 34677888763 477888888877 6655 6777776553 34588899999999
Q ss_pred EEEcC
Q 021235 155 ELISK 159 (315)
Q Consensus 155 ~~v~~ 159 (315)
++++-
T Consensus 90 v~~Di 94 (363)
T PF01041_consen 90 VFVDI 94 (363)
T ss_dssp EEE-B
T ss_pred EEEec
Confidence 99974
No 222
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.54 E-value=2.8e+02 Score=26.40 Aligned_cols=74 Identities=20% Similarity=0.028 Sum_probs=41.4
Q ss_pred CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCC-CEEEEEcCCcccccChHHHHH
Q 021235 94 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-AHIELISKEEYSKIGSVTLTN 172 (315)
Q Consensus 94 G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~G-AeV~~v~~~~~~~~~~~~~~~ 172 (315)
|...+||-| ++-.|+++|.-.+++|-+.+++=-.... ..+....++..| |+-..++-..++ .+.
T Consensus 38 g~~vLITGg--g~GlGr~ialefa~rg~~~vl~Din~~~-------~~etv~~~~~~g~~~~y~cdis~~e------ei~ 102 (300)
T KOG1201|consen 38 GEIVLITGG--GSGLGRLIALEFAKRGAKLVLWDINKQG-------NEETVKEIRKIGEAKAYTCDISDRE------EIY 102 (300)
T ss_pred CCEEEEeCC--CchHHHHHHHHHHHhCCeEEEEeccccc-------hHHHHHHHHhcCceeEEEecCCCHH------HHH
Confidence 334566643 3679999999999999955554322221 123455666667 333444432222 235
Q ss_pred HHHHHHHHhC
Q 021235 173 ILKEKLLKEG 182 (315)
Q Consensus 173 ~~~~~l~~~~ 182 (315)
+.+++++++-
T Consensus 103 ~~a~~Vk~e~ 112 (300)
T KOG1201|consen 103 RLAKKVKKEV 112 (300)
T ss_pred HHHHHHHHhc
Confidence 5666777653
No 223
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.51 E-value=2.8e+02 Score=24.28 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCC----CCCeEEEEecc
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGT----LKAKVHAFSVC 256 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~----~~~rVigV~~~ 256 (315)
.++++||| .+..++.|+..++++.+ .++.|+|++-.
T Consensus 171 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 210 (263)
T cd06280 171 ERPEALVA--SNGLLLLGALRAVRAAGLRIPQDLALAGFDND 210 (263)
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCcEEEEEeCCh
Confidence 35888877 66677889999999876 36678887764
No 224
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=37.48 E-value=36 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=21.7
Q ss_pred EeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCc
Q 021235 226 VACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 226 v~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~ 259 (315)
+++|+|..+.-+...+ ..+++.+++||+.....
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~ 36 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISPEM 36 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-HHH
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCHHH
Confidence 5789999998888877 44577999999987543
No 225
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=37.21 E-value=90 Score=28.63 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=34.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ .|..|.+++..|+.+|.+.++..+.. .+...++.+|++-++
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~v~ 196 (326)
T cd08289 148 GPVLVTGA-TGGVGSLAVSILAKLGYEVVASTGKA-----------DAADYLKKLGAKEVI 196 (326)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCeEEEEecCH-----------HHHHHHHHcCCCEEE
Confidence 46665654 47899999999999999865554332 246667889985443
No 226
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=37.20 E-value=85 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=34.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|+.++..|+.+|.+-++++.... .+..+++.+||+.++
T Consensus 193 ~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~----------~r~~~a~~~Ga~~~i 241 (371)
T cd08281 193 QSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNE----------DKLALARELGATATV 241 (371)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCH----------HHHHHHHHcCCceEe
Confidence 45555553 77899999999999996455544322 357788899997544
No 227
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.11 E-value=57 Score=27.94 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 82 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 82 ~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
-+...+.++.+.|++.|| ||. .+.-.|+++|++++++.+
T Consensus 113 e~~~~i~~~~~~G~~viV--Gg~------~~~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 113 EIEAAIKQAKAEGVDVIV--GGG------VVCRLARKLGLPGVLIES 151 (176)
T ss_dssp HHHHHHHHHHHTT--EEE--ESH------HHHHHHHHTTSEEEESS-
T ss_pred HHHHHHHHHHHcCCcEEE--CCH------HHHHHHHHcCCcEEEEEe
Confidence 456668888899999888 441 235677999999877754
No 228
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.08 E-value=1.3e+02 Score=27.90 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.8
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++|+..|+ .|..|++++..|+.+|.+.+++.+.. +...++.+|++.+
T Consensus 179 ~~vlI~g~-~g~ig~~~~~~a~~~g~~vi~~~~~~------------~~~~~~~~g~~~~ 225 (350)
T cd08274 179 ETVLVTGA-SGGVGSALVQLAKRRGAIVIAVAGAA------------KEEAVRALGADTV 225 (350)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCch------------hhHHHHhcCCeEE
Confidence 45555554 57899999999999999965554321 3556678999743
No 229
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=37.05 E-value=3e+02 Score=24.37 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=33.1
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+++..|+ +|--|.++|....+.|.+++++.+...+.. ......++..|.++..+.
T Consensus 9 ~~lItGa-~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 9 VVVITGG-STGLGRAMAVRFGKEKAKVVINYRSDEEEA------NDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCCHHHH------HHHHHHHHHcCCeEEEEE
Confidence 3443454 468899999999999998877755432110 112333445677766554
No 230
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=37.05 E-value=1.8e+02 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
...++.+++.+ .++| +|+++|+|..+
T Consensus 68 ~v~~~~~~~~~----~~~d-~IiaiGGGs~~ 93 (370)
T cd08551 68 NVDAAVAAYRE----EGCD-GVIAVGGGSVL 93 (370)
T ss_pred HHHHHHHHHHh----cCCC-EEEEeCCchHH
Confidence 44566666653 2465 57788887654
No 231
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.99 E-value=1.3e+02 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=35.5
Q ss_pred CchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 103 GIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 103 ~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
|..| .|.---..|+.+|++++++-.... .+-..++.+|||..++..
T Consensus 189 GlGG-LGh~aVq~AKAMG~rV~vis~~~~----------kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 189 GLGG-LGHMAVQYAKAMGMRVTVISTSSK----------KKEEAIKSLGADVFVDST 234 (360)
T ss_pred cCcc-cchHHHHHHHHhCcEEEEEeCCch----------hHHHHHHhcCcceeEEec
Confidence 3445 777777889999999999965542 257789999999988765
No 232
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.98 E-value=1.1e+02 Score=25.89 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=30.6
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHH
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL 269 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l 269 (315)
.+|.||+..|.-+.+.|+..++- ...||||.+....-.....+..+
T Consensus 55 ~~~viIa~AG~~a~Lpgvva~~t----~~PVIgvP~~~~~~~g~d~l~S~ 100 (150)
T PF00731_consen 55 GADVIIAVAGMSAALPGVVASLT----TLPVIGVPVSSGYLGGLDSLLSI 100 (150)
T ss_dssp TESEEEEEEESS--HHHHHHHHS----SS-EEEEEE-STTTTTHHHHHHH
T ss_pred CCEEEEEECCCcccchhhheecc----CCCEEEeecCcccccCcccHHHH
Confidence 47899999999999999999885 57999998776543333333333
No 233
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.94 E-value=1e+02 Score=29.03 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCC
Q 021235 169 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 248 (315)
Q Consensus 169 ~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~ 248 (315)
..++++.+.+++.+...-...... . | -+.|+++++.. ..+|.|+++.|- ||+.-++.++.......
T Consensus 20 ~~~~~~~~~l~~~g~~~~~~~t~~--~----g---~a~~~a~~a~~----~~~D~via~GGD-GTv~evingl~~~~~~~ 85 (301)
T COG1597 20 KLLREVEELLEEAGHELSVRVTEE--A----G---DAIEIAREAAV----EGYDTVIAAGGD-GTVNEVANGLAGTDDPP 85 (301)
T ss_pred hHHHHHHHHHHhcCCeEEEEEeec--C----c---cHHHHHHHHHh----cCCCEEEEecCc-chHHHHHHHHhcCCCCc
Confidence 455667777777664432232211 1 2 23466666542 247766665555 77888899988765444
Q ss_pred eEEEEeccCCchh
Q 021235 249 KVHAFSVCDDPDY 261 (315)
Q Consensus 249 rVigV~~~g~~~~ 261 (315)
+|+-|.|+...
T Consensus 86 --LgilP~GT~Nd 96 (301)
T COG1597 86 --LGILPGGTAND 96 (301)
T ss_pred --eEEecCCchHH
Confidence 99999998654
No 234
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.93 E-value=2.8e+02 Score=24.10 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=22.5
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
++..|+ +|..|.++|......|.+++++.+.
T Consensus 10 vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 10 ALITGA-GRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred EEEEcC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 333454 5789999998888899987776543
No 235
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.92 E-value=2.7e+02 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=22.7
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+++..|+ +|--|.++|......|++++++.+.
T Consensus 12 ~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 12 VAVVTGA-GRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3433454 4678999998888899987776543
No 236
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=36.79 E-value=48 Score=30.37 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=26.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..++.+|+ |.-++++|..|+.+|++++++=+
T Consensus 101 ~~L~IfGa--G~va~~la~la~~lGf~V~v~D~ 131 (246)
T TIGR02964 101 PHVVLFGA--GHVGRALVRALAPLPCRVTWVDS 131 (246)
T ss_pred CEEEEECC--cHHHHHHHHHHhcCCCEEEEEeC
Confidence 56777887 88999999999999999998743
No 237
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.75 E-value=77 Score=30.07 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=33.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHH-hCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVER-LVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r-~~GAeV~~ 156 (315)
++|+..|+ +|--|++++..|+.+|.+.+.+.+. ..+...++ .+|++-++
T Consensus 160 ~~VlV~Ga-aG~vG~~aiqlAk~~G~~Vi~~~~~-----------~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 160 DSVFVSAA-SGAVGQLVGQLAKLHGCYVVGSAGS-----------SQKVDLLKNKLGFDEAF 209 (348)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEcCC-----------HHHHHHHHHhcCCCEEE
Confidence 45655554 4788999999999999985444322 12566676 79997554
No 238
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=36.70 E-value=2.9e+02 Score=24.08 Aligned_cols=35 Identities=17% Similarity=-0.043 Sum_probs=25.7
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEec
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 255 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~ 255 (315)
..+|+||++ +..++.|+..++++.+. ++.|+|++-
T Consensus 175 ~~~~ai~~~--~~~~a~g~~~al~~~g~~~p~~v~v~g~d~ 213 (267)
T cd06284 175 DRPTAIFCF--SDEMAIGAISALKELGLRVPEDISVVGFDD 213 (267)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCccceeEEEeCC
Confidence 358999986 55667899999998763 556777754
No 239
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.64 E-value=2.8e+02 Score=24.38 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=23.3
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+++..|+ +|.-|.++|....+.|.+++++-+.
T Consensus 13 ~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 13 VALVTGS-ARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred EEEEECC-CchHHHHHHHHHHHcCCeEEEEeCC
Confidence 3443454 5789999999888999987777553
No 240
>PLN02263 serine decarboxylase
Probab=36.58 E-value=3.6e+02 Score=27.31 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=35.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.+++|.|||.||...-++ ||..--+.++|++..+.. .-...++.+|.+++.|+.
T Consensus 154 ~G~vtsGGTEaNL~Al~a--ARe~~~~~vvy~S~~aH~--------Sv~KAa~llgi~~~~Vp~ 207 (470)
T PLN02263 154 WGYITNCGTEGNLHGILV--GREVFPDGILYASRESHY--------SVFKAARMYRMECVKVDT 207 (470)
T ss_pred eEEEeCcHHHHHHHHHHH--HHhhcCCcEEEEcCCccH--------HHHHHHHhcCCcceEecc
Confidence 368888888888654322 344444567888876631 124567789999988874
No 241
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.58 E-value=3.1e+02 Score=24.43 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=23.5
Q ss_pred CEEEecCCch-hHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~-GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..||| |+++ +--|.++|...++.|.+++++-+
T Consensus 12 ~~lIt-Gas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 12 RGLVV-GIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 33454 6654 47899999999999998777644
No 242
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=36.52 E-value=3e+02 Score=24.28 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc--------ccCCCCCccchH--HHHHhC--C
Q 021235 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV--------LVDQDPGLIGNL--LVERLV--G 151 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~--------~~~~~p~~~~n~--~~~r~~--G 151 (315)
...+..+..++.+.||..+ ...+........++..|++++.+-+.... ....+....++. ..+... |
T Consensus 45 ~~~i~~l~~~~vdgiIi~~-~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g 123 (273)
T cd06309 45 ISAIRSFIAQGVDVIILAP-VVETGWDPVLKEAKAAGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKATGG 123 (273)
T ss_pred HHHHHHHHHcCCCEEEEcC-CccccchHHHHHHHHCCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHHcCC
Confidence 3446667778899988653 33342233344567889999888653211 010010001111 122222 4
Q ss_pred C-EEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCc
Q 021235 152 A-HIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGS 230 (315)
Q Consensus 152 A-eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGt 230 (315)
. ++.++... ........+.+-..+.+++.+ ..........+.....++ ....++.++-+ .++|.||+. +
T Consensus 124 ~~~i~~i~~~-~~~~~~~~R~~Gf~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-----~~~~aI~~~--~ 193 (273)
T cd06309 124 KGNIVELQGT-VGSSVAIDRKKGFAEVIKKYP-NMKIVASQTGDFTRAKGK-EVMEALLKAHG-----DDIDAVYAH--N 193 (273)
T ss_pred CceEEEEeCC-CCCchHHHHHHHHHHHHHHCC-CCEEeeccCCcccHHHHH-HHHHHHHHhCC-----CCccEEEEC--C
Confidence 3 45555421 111111223333444455432 222121111111112233 23344443321 157888766 3
Q ss_pred hhhHHHHHHHHhcCCC----CCeEEEEecc
Q 021235 231 GGTIAGLSLGSWLGTL----KAKVHAFSVC 256 (315)
Q Consensus 231 GGt~aGl~~~~k~~~~----~~rVigV~~~ 256 (315)
..++.|+..++++.+. ++.|+|++-.
T Consensus 194 d~~a~g~~~a~~~~g~~ip~di~iig~d~~ 223 (273)
T cd06309 194 DEMALGAIQAIKAAGKKPGKDIKIVSIDGT 223 (273)
T ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEecCCC
Confidence 3456688999988764 4688888654
No 243
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.35 E-value=1.5e+02 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=33.1
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++|+..|+ .|..|++++..|+.+|.+.+...+.. .+...++.+|++..
T Consensus 134 ~~vli~g~-~~~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~ 181 (305)
T cd08270 134 RRVLVTGA-SGGVGRFAVQLAALAGAHVVAVVGSP-----------ARAEGLRELGAAEV 181 (305)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEE
Confidence 55665554 47899999999999999854443321 24667777998633
No 244
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.27 E-value=51 Score=33.35 Aligned_cols=35 Identities=29% Similarity=0.257 Sum_probs=29.7
Q ss_pred cCCCEEEecCCc--------------hhHHHHHHHHHHHHcCCeEEEEe
Q 021235 93 QGADCIITIGGI--------------QSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 93 ~G~~~vVt~g~s--------------~GNhg~alA~aa~~lGl~~~ivv 127 (315)
.|.+-+||.|++ +|-.|.++|.+++.+|-+++++.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 455667777764 79999999999999999999997
No 245
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=36.11 E-value=1.1e+02 Score=28.53 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=35.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+. +|+ |..|++++..|+.+|.+.++++.... .+...++.+|++.++
T Consensus 176 ~~vlI-~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVL-AGA-GPLGLGMIGAARLKNPKKLIVLDLKD----------ERLALARKFGADVVL 224 (350)
T ss_pred CEEEE-ECC-CHHHHHHHHHHHHcCCcEEEEEcCCH----------HHHHHHHHcCCcEEe
Confidence 45655 444 78999999999999998776665432 256777889987554
No 246
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=36.00 E-value=87 Score=29.08 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=25.1
Q ss_pred CCeEEEeCCchhhHHHHHHHHhcCCCCCe-EEEEeccCCchh
Q 021235 221 FDDIVVACGSGGTIAGLSLGSWLGTLKAK-VHAFSVCDDPDY 261 (315)
Q Consensus 221 ~D~ivv~vGtGGt~aGl~~~~k~~~~~~r-VigV~~~g~~~~ 261 (315)
+| +|+++|+=||+.-++.++.......+ -+||-|.|+...
T Consensus 53 ~d-~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNd 93 (293)
T TIGR03702 53 VS-TVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTAND 93 (293)
T ss_pred CC-EEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhH
Confidence 45 44567777778888888765432222 468888776543
No 247
>PLN02591 tryptophan synthase
Probab=36.00 E-value=3.5e+02 Score=24.87 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 81 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 81 R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
++...+++++.+.|++.|+...=. =....-+...|+.+|+..+.++..++
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 466777888888888887765432 25566778888888888888885544
No 248
>PRK06847 hypothetical protein; Provisional
Probab=35.97 E-value=49 Score=31.36 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.3
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
.|+..|| |=.|.++|...++.|++++|+=.
T Consensus 6 ~V~IVGa--G~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGG--GIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEec
Confidence 3555576 78899999999999999888843
No 249
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=35.88 E-value=3.2e+02 Score=24.34 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 86 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 86 ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
.+..+..++++.||.... ........-..++..|++++++-.
T Consensus 46 ~i~~~~~~~~dgiii~~~-~~~~~~~~~~~~~~~~iPvV~~~~ 87 (289)
T cd01540 46 AIDNLGAQGAKGFVICVP-DVKLGPAIVAKAKAYNMKVVAVDD 87 (289)
T ss_pred HHHHHHHcCCCEEEEccC-chhhhHHHHHHHHhCCCeEEEecC
Confidence 456667788898887532 122334445567789999998853
No 250
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=35.78 E-value=1.2e+02 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=33.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |..|++++..|+.+|++.++++.... .+..+++.+|++.++
T Consensus 174 ~~vlI~g~--g~vG~~a~q~a~~~G~~~v~~~~~~~----------~~~~~~~~~ga~~~i 222 (351)
T cd08233 174 DTALVLGA--GPIGLLTILALKAAGASKIIVSEPSE----------ARRELAEELGATIVL 222 (351)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHhCCCEEE
Confidence 45555553 68999999999999996555553322 256677789997655
No 251
>PLN02740 Alcohol dehydrogenase-like
Probab=35.71 E-value=1e+02 Score=29.57 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=34.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++..|+.+|.+-++.+.... .+++.++.+||+.++
T Consensus 200 ~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~----------~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 200 SSVAIFGL--GAVGLAVAEGARARGASKIIGVDINP----------EKFEKGKEMGITDFI 248 (381)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCCh----------HHHHHHHHcCCcEEE
Confidence 45655653 78999999999999986444443321 257788899997544
No 252
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=35.53 E-value=1.8e+02 Score=25.57 Aligned_cols=48 Identities=21% Similarity=0.044 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 105 QSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 105 ~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
++--|.++|....+.|.++++.-+...... ..-..+.+.+|.+++.++
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~------~~~~~l~~~~~~~~~~~D 52 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLA------DALEELAKEYGAEVIQCD 52 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHH------HHHHHHHHHTTSEEEESC
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHH------HHHHHHHHHcCCceEeec
Confidence 467889999999999999888765443110 011344556888864443
No 253
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=35.50 E-value=4.2e+02 Score=25.67 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=44.3
Q ss_pred CEEEecCCchhHHHHHHHHHHH------HcC----CeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCccccc
Q 021235 96 DCIITIGGIQSNHCRAAAVAAK------YLN----LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKI 165 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~------~lG----l~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~ 165 (315)
.+++|.|||.+|.-.-+|+--+ ..| -+.++|+++... + .-...++.+|-.++.|+-..-...
T Consensus 105 ~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH-----~---S~~Kaa~~lGlg~~~I~~~~~~~m 176 (373)
T PF00282_consen 105 GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH-----Y---SIEKAARILGLGVRKIPTDEDGRM 176 (373)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS------T---HHHHHHHHTTSEEEEE-BBTTSSB
T ss_pred ceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc-----c---HHHHhcceeeeEEEEecCCcchhh
Confidence 4788888888886544443222 224 357888887653 1 235667888888888864321111
Q ss_pred ChHHHHHHHHHHHHHhCCCcE
Q 021235 166 GSVTLTNILKEKLLKEGRRPY 186 (315)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~y 186 (315)
..+.+++..++..++|..++
T Consensus 177 -d~~~L~~~l~~~~~~g~~p~ 196 (373)
T PF00282_consen 177 -DIEALEKALEKDIANGKTPF 196 (373)
T ss_dssp --HHHHHHHHHHHHHTTEEEE
T ss_pred -hHHHhhhhhcccccccccce
Confidence 12233444444445454453
No 254
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=35.50 E-value=97 Score=29.54 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=33.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++.+|+.+|.+-++.+.... .+...++.+||+.++
T Consensus 187 ~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~----------~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINP----------AKFELAKKLGATDCV 235 (368)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHhCCCeEE
Confidence 45555553 78899999999999995444443321 257788889997544
No 255
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=35.49 E-value=4.9e+02 Score=26.42 Aligned_cols=133 Identities=14% Similarity=0.014 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCeEEEEe---cCCCcccCCCCCc--cchHHHHHhCCCEEEEEcCCc----ccccChHHHHHHHHHHHHH
Q 021235 110 RAAAVAAKYLNLDCYLIL---RTSKVLVDQDPGL--IGNLLVERLVGAHIELISKEE----YSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivv---p~~~~~~~~~p~~--~~n~~~~r~~GAeV~~v~~~~----~~~~~~~~~~~~~~~~l~~ 180 (315)
.-+...|+++|.++++-. .+-... +.|+. ..-+.-.-.-|++-++.+.++ |-- ...+.+.+++++.++
T Consensus 262 k~ii~~~~~~gkpvi~ATqmLeSM~~~--p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPv-eaV~~m~~I~~~aE~ 338 (480)
T cd00288 262 KMLIAKCNLAGKPVITATQMLESMIYN--PRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPV-EAVKAMARICLEAEK 338 (480)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhC--CCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHH-HHHHHHHHHHHHHHh
Confidence 447778999999888732 221110 01221 122434444599988876432 321 122344444444332
Q ss_pred hCCCc-EEeCCCCC--ch-hhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 181 EGRRP-YVIPVGGS--NS-IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 181 ~~~~~-y~ip~g~~--n~-~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
..... ++...... .. .........+.++.+.+ +.++||+++=||.|+--++++ .|+.+|++|...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l-------~akaIVv~T~SG~TA~~lS~~----RP~~pIiavT~~ 407 (480)
T cd00288 339 ALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFEL-------GAKAIVVLTTSGRTARLVSKY----RPNAPIIAVTRN 407 (480)
T ss_pred ccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhc-------CCCEEEEECCCcHHHHHHHhh----CCCCCEEEEcCC
Confidence 11000 01100000 00 11223334566666655 478999999999999766654 366777777665
No 256
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=35.34 E-value=1.8e+02 Score=26.42 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=33.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
+.|+..|+ +|-.|++++..|+.+|.+.+++.+.. .+...++.+|++-++
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 196 (325)
T cd05280 148 GPVLVTGA-TGGVGSIAVAILAKLGYTVVALTGKE-----------EQADYLKSLGASEVL 196 (325)
T ss_pred CEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHhcCCcEEE
Confidence 45665654 47899999999999999954443322 246667889986443
No 257
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=35.33 E-value=2.3e+02 Score=27.25 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHh----------------cCCCCCeEEEEeccC
Q 021235 205 IKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW----------------LGTLKAKVHAFSVCD 257 (315)
Q Consensus 205 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k----------------~~~~~~rVigV~~~g 257 (315)
..++.+++.+ .++ .+|+++|+|..+ =++++.. ...+.++++.|....
T Consensus 72 v~~~~~~~~~----~~~-D~IIavGGGSvi-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 72 IMEAVEIAKK----FNA-DFVIGIGGGSPL-DAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHh----cCC-CEEEEeCCchHH-HHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 4455555543 234 466778776643 2333221 113457788887653
No 258
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=35.14 E-value=1e+02 Score=29.36 Aligned_cols=58 Identities=17% Similarity=0.009 Sum_probs=39.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
+.|+|.+ .|-....+=..|+..|-++.+|+-++.|..+ =..-...++.+|-++.++.+
T Consensus 121 ~~IlTh~--~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e----G~~~ak~L~~~gI~~~~I~D 178 (301)
T COG1184 121 DVILTHS--FSKTVLEVLKTAADRGKRFKVIVTESRPRGE----GRIMAKELRQSGIPVTVIVD 178 (301)
T ss_pred CEEEEec--CcHHHHHHHHHhhhcCCceEEEEEcCCCcch----HHHHHHHHHHcCCceEEEec
Confidence 6778875 3567777778888888888888877765321 01235667778877777765
No 259
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.05 E-value=3.3e+02 Score=24.30 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=23.5
Q ss_pred CEEEecCCc-hhHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGI-QSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s-~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..||| |++ ++.-|.++|..-.+.|.++++.-+
T Consensus 9 ~~lIt-Ga~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 9 TYVVM-GVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred EEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 34554 655 368899999999999998776643
No 260
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=34.79 E-value=3.1e+02 Score=23.88 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=32.8
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
+++..|+ +|--|.++|......|.+++++....... ...-...++..|.++..+.-
T Consensus 8 ~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 8 VAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEA------AENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred EEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHH------HHHHHHHHHhcCCeEEEEEC
Confidence 3443454 47899999998889999877644322110 00112344556777766653
No 261
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=34.73 E-value=45 Score=32.86 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
||.+|| |=.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGg--G~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGG--GPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE----SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECc--cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 344565 6679999999999999999985543
No 262
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=34.53 E-value=3.6e+02 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.7
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEecc
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVC 256 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~~ 256 (315)
.||+||| .+..++.|+..++++.+. ++.|+|++-.
T Consensus 236 ~p~ai~~--~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~~ 274 (329)
T TIGR01481 236 LPTAVFV--ASDEMAAGILNAAMDAGIKVPEDLEVITSNNT 274 (329)
T ss_pred CCCEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 4798887 455688899999998763 5778888743
No 263
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.51 E-value=3.1e+02 Score=23.79 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=32.1
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
..+|+ |+ +|--|.++|......|.+++++.+.... .......++..|+++..+.
T Consensus 7 ~~lIt-G~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~-------~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 7 VIVIT-GG-AQGLGRAMAEYLAQKGAKLALIDLNQEK-------LEEAVAECGALGTEVRGYA 60 (253)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHHHHhcCCceEEEE
Confidence 33454 54 4789999999999999987665433211 0112333455577765554
No 264
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.50 E-value=3e+02 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=23.4
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+++..|+ +|.-|.++|....+.|.+.+++...
T Consensus 7 ~vlItG~-sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 7 VALVTGA-SRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444454 4789999999988899987666654
No 265
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.44 E-value=1.4e+02 Score=26.30 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEE
Q 021235 88 ADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 126 (315)
Q Consensus 88 ~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~iv 126 (315)
....++|.. |+..+-. -+....++...+..|-+.+.+
T Consensus 23 ~~la~~G~~-V~~~~r~-~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 23 CHFARLGAT-LILCDQD-QSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred HHHHHCCCE-EEEEcCC-HHHHHHHHHHHHhcCCCeEEE
Confidence 334456765 4434332 344445555555667665544
No 266
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=34.43 E-value=4.7e+02 Score=25.91 Aligned_cols=41 Identities=22% Similarity=0.077 Sum_probs=23.6
Q ss_pred CCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCch
Q 021235 182 GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 231 (315)
Q Consensus 182 ~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 231 (315)
+.....++.+-+++.. ...+..++.+++ +.+|.+|-++|.+
T Consensus 102 G~~a~~i~~DVss~E~---v~~lie~I~e~~------G~IDiLVnSaA~~ 142 (398)
T PRK13656 102 GLYAKSINGDAFSDEI---KQKVIELIKQDL------GQVDLVVYSLASP 142 (398)
T ss_pred CCceEEEEcCCCCHHH---HHHHHHHHHHhc------CCCCEEEECCccC
Confidence 3333445544444433 234555666654 3588888888887
No 267
>PRK07109 short chain dehydrogenase; Provisional
Probab=34.42 E-value=2.7e+02 Score=26.24 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 021235 145 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 224 (315)
Q Consensus 145 ~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~i 224 (315)
..+...|++|+.+.+.. +.++.+.+++++.+.+..+++.+-.++... ..+..++.+++ +.+|.+
T Consensus 26 ~~la~~G~~Vvl~~R~~-------~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v---~~~~~~~~~~~------g~iD~l 89 (334)
T PRK07109 26 RAFARRGAKVVLLARGE-------EGLEALAAEIRAAGGEALAVVADVADAEAV---QAAADRAEEEL------GPIDTW 89 (334)
T ss_pred HHHHHCCCEEEEEECCH-------HHHHHHHHHHHHcCCcEEEEEecCCCHHHH---HHHHHHHHHHC------CCCCEE
Confidence 34455799998887631 122444455555454555666555555433 23555665554 368999
Q ss_pred EEeCCch
Q 021235 225 VVACGSG 231 (315)
Q Consensus 225 vv~vGtG 231 (315)
|..+|.+
T Consensus 90 InnAg~~ 96 (334)
T PRK07109 90 VNNAMVT 96 (334)
T ss_pred EECCCcC
Confidence 9999864
No 268
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.35 E-value=1.7e+02 Score=26.01 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=32.9
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+|| |+ ++--|+++|....+.|.+++++-+... .......+..|.++..+.
T Consensus 11 ~lIt-Ga-s~gIG~aia~~l~~~G~~vv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 11 AIIT-GC-NTGLGQGMAIGLAKAGADIVGVGVAEA---------PETQAQVEALGRKFHFIT 61 (251)
T ss_pred EEEe-CC-CchHHHHHHHHHHHCCCEEEEecCchH---------HHHHHHHHHcCCeEEEEE
Confidence 3444 54 478999999999999999887643221 112334456777776554
No 269
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=34.30 E-value=1.1e+02 Score=27.96 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=35.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ .|-.|++++..|+.+|.+.+++.... .+...++.+|++-++
T Consensus 148 ~~vlI~ga-~g~vg~~~~~~A~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~~ 196 (324)
T cd08288 148 GPVLVTGA-AGGVGSVAVALLARLGYEVVASTGRP-----------EEADYLRSLGASEII 196 (324)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCH-----------HHHHHHHhcCCCEEE
Confidence 46666654 57899999999999999865554322 256677889985444
No 270
>PLN02743 nicotinamidase
Probab=34.27 E-value=71 Score=29.18 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=32.3
Q ss_pred HHcCCCEEEecCCchhHHHH----HHHHHHHHcCC-----eEEEEecCCC
Q 021235 91 VAQGADCIITIGGIQSNHCR----AAAVAAKYLNL-----DCYLILRTSK 131 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~----alA~aa~~lGl-----~~~ivvp~~~ 131 (315)
++.|+++||.+| ...|.|. ++|..|..+|+ +++++-+...
T Consensus 147 r~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~a 195 (239)
T PLN02743 147 NNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYSRGCA 195 (239)
T ss_pred HHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeCCccc
Confidence 468999998764 6789999 89999999999 6777665543
No 271
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=34.00 E-value=5e+02 Score=26.12 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHcCCeEEEEec
Q 021235 106 SNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 106 GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+.|.++|..-...|++++++-+
T Consensus 8 G~MG~~mA~nL~~~G~~V~v~dr 30 (467)
T TIGR00873 8 AVMGSNLALNMADHGFTVSVYNR 30 (467)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeC
Confidence 89999999999999998888743
No 272
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=33.93 E-value=3.2e+02 Score=23.84 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=32.5
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
++..|+ +|--|.++|....+.|.+.+++-+.... .......++..|.++..+.
T Consensus 3 ~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~-------~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEET-------AKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHHHHhcCCeEEEEE
Confidence 333454 4788999999999999987666543211 0112344556677776654
No 273
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=33.63 E-value=4.3e+02 Score=25.16 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=81.1
Q ss_pred HcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCccc--CCCC-------C--ccc--h-HHHHHhCCC-EEEE
Q 021235 92 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV--DQDP-------G--LIG--N-LLVERLVGA-HIEL 156 (315)
Q Consensus 92 ~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~--~~~p-------~--~~~--n-~~~~r~~GA-eV~~ 156 (315)
.+|+..|| |...|....++.-++.+.++..+...-...... .-++ . ..+ - -.+.+..|. .+.+
T Consensus 76 ~~~V~~vv--G~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~i 153 (366)
T COG0683 76 QDGVDAVV--GPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAI 153 (366)
T ss_pred hcCceEEE--EeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEE
Confidence 46777676 334455667777778888877655431111000 0000 0 000 1 123445677 6766
Q ss_pred EcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHH
Q 021235 157 ISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIA 235 (315)
Q Consensus 157 v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~a 235 (315)
+... .|.+ ...+...+.+++.|.. ...-+. .++.... +..+..+|.+. .+| +|+-.|.+...+
T Consensus 154 i~~~~~yg~----~~~~~~~~~l~~~G~~-~~~~~~-~~~~~~~-~~~~v~~i~~~--------~~d-~v~~~~~~~~~~ 217 (366)
T COG0683 154 IGDDYAYGE----GLADAFKAALKALGGE-VVVEEV-YAPGDTD-FSALVAKIKAA--------GPD-AVLVGGYGPDAA 217 (366)
T ss_pred EeCCCCcch----hHHHHHHHHHHhCCCe-EEEEEe-eCCCCCC-hHHHHHHHHhc--------CCC-EEEECCCCccch
Confidence 6542 3432 2334455566666643 211010 0111111 44555566442 477 667778888888
Q ss_pred HHHHHHhcCCCCCeEEEEeccCCc
Q 021235 236 GLSLGSWLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 236 Gl~~~~k~~~~~~rVigV~~~g~~ 259 (315)
.+.+.+++.+-+.++++.+..+..
T Consensus 218 ~~~r~~~~~G~~~~~~~~~~~~~~ 241 (366)
T COG0683 218 LFLRQAREQGLKAKLIGGDGAGTA 241 (366)
T ss_pred HHHHHHHHcCCCCccccccccCch
Confidence 999999998888888888777654
No 274
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=33.62 E-value=2.7e+02 Score=24.05 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCC-ccchHHHHHhCCCEEE
Q 021235 77 GNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIE 155 (315)
Q Consensus 77 g~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~-~~~n~~~~r~~GAeV~ 155 (315)
-|-++.++-.+++|.+.|.+++|.++ ++|-+++-++-... -.++.++|..+.--..+.+-+ ...-...++-.||+|.
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS-~tG~tA~k~lemve-g~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~ 87 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVAS-STGYTALKALEMVE-GDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVL 87 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEe-cccHHHHHHHHhcc-cCceEEEEEeecccccCCceecCHHHHHHHHHcCceee
Confidence 37888999999999999999988764 55666655443332 237777776432111000000 0123455666787776
Q ss_pred EEc
Q 021235 156 LIS 158 (315)
Q Consensus 156 ~v~ 158 (315)
.-+
T Consensus 88 ~~s 90 (186)
T COG1751 88 TQS 90 (186)
T ss_pred eeh
Confidence 543
No 275
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=33.62 E-value=1.5e+02 Score=26.05 Aligned_cols=44 Identities=9% Similarity=-0.116 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHc---CC----CEEEecCCchhHHHHHHHHHHHHcCCeEEEE
Q 021235 81 RKLEFLMADAVAQ---GA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 126 (315)
Q Consensus 81 R~l~~ll~~a~~~---G~----~~vVt~g~s~GNhg~alA~aa~~lGl~~~iv 126 (315)
|+..+.++.+.+. +. ++++..|. ||.|..+|.....+|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~--G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGL--GKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEE
Confidence 4555666665544 22 35665664 799999999999999988743
No 276
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=33.55 E-value=1.2e+02 Score=28.23 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCC-eEEEEecCCCcccCCCCCccchHHHHHh-CCCEEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIELI 157 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl-~~~ivvp~~~~~~~~~p~~~~n~~~~r~-~GAeV~~v 157 (315)
++|+..|+ +|--|+++...|+.+|. +.+.+.+.. .+...++. +|++-++.
T Consensus 156 ~~VlI~ga-~g~vG~~aiqlAk~~G~~~Vi~~~~s~-----------~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 156 QTMVVSGA-AGACGSLAGQIGRLLGCSRVVGICGSD-----------EKCQLLKSELGFDAAIN 207 (345)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCCEEEEEcCCH-----------HHHHHHHHhcCCcEEEE
Confidence 56665654 47889999999999998 455443321 24566655 99976543
No 277
>PRK05876 short chain dehydrogenase; Provisional
Probab=33.49 E-value=3.2e+02 Score=24.76 Aligned_cols=53 Identities=19% Similarity=0.027 Sum_probs=31.3
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+|| |+ +|--|.++|..-.+.|.+++++..... . ...-...++..|.++..+.
T Consensus 9 vlVT-Ga-s~gIG~ala~~La~~G~~Vv~~~r~~~-~------l~~~~~~l~~~~~~~~~~~ 61 (275)
T PRK05876 9 AVIT-GG-ASGIGLATGTEFARRGARVVLGDVDKP-G------LRQAVNHLRAEGFDVHGVM 61 (275)
T ss_pred EEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCHH-H------HHHHHHHHHhcCCeEEEEe
Confidence 3454 54 478899999999999998666543321 1 0111333445576665554
No 278
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=33.48 E-value=3.4e+02 Score=23.97 Aligned_cols=157 Identities=16% Similarity=0.132 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC-----cccCCCCCccchH---HHHHhCC---CE
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK-----VLVDQDPGLIGNL---LVERLVG---AH 153 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~-----~~~~~~p~~~~n~---~~~r~~G---Ae 153 (315)
..+....+ +++.+|... ..++.....-..+.+.|++++++-.... .....+....+.. .+.+.+| .+
T Consensus 50 ~~i~~~~~-~vdgiii~~-~~~~~~~~~i~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~~~ 127 (275)
T cd06307 50 AALLRLGA-RSDGVALVA-PDHPQVRAAVARLAAAGVPVVTLVSDLPGSPRAGYVGIDNRAAGRTAAWLIGRFLGRRPGK 127 (275)
T ss_pred HHHHHHHh-cCCEEEEeC-CCcHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeEEccChHHHHHHHHHHHHHHhCCCCCe
Confidence 34455556 888888653 2233322333455568999887753211 1111111111221 1233323 37
Q ss_pred EEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEe-C-CCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCch
Q 021235 154 IELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI-P-VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 231 (315)
Q Consensus 154 V~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~i-p-~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 231 (315)
+.++... ........+.+...+.+++.+...-.. . .+..+.. .++ ....++.++- .++|+||+.-.
T Consensus 128 i~~i~~~-~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~~~------~~~~ai~~~~d-- 195 (275)
T cd06307 128 VAVLAGS-HRFRGHEEREMGFRSVLREEFPGLRVLETLEGLDDPA--RAY-EATRKLLARH------PDLVGIYNAGG-- 195 (275)
T ss_pred EEEEecC-CCCcchHHHHHHHHHHHHhhCCCcEEEeeccCCCChH--HHH-HHHHHHHHhC------CCceEEEECCC--
Confidence 7766432 111111122233333444433221111 1 1111221 233 2334444321 35888888743
Q ss_pred hhHHHHHHHHhcCCC--CCeEEEEecc
Q 021235 232 GTIAGLSLGSWLGTL--KAKVHAFSVC 256 (315)
Q Consensus 232 Gt~aGl~~~~k~~~~--~~rVigV~~~ 256 (315)
.+ .|+..++++.+. ++.|+|++-.
T Consensus 196 ~~-~g~~~al~~~g~~~di~Ivg~d~~ 221 (275)
T cd06307 196 GN-RGVIRALREAGRAGKVVFVGHELT 221 (275)
T ss_pred Ch-HHHHHHHHHcCCCCCcEEEEecCC
Confidence 34 699999998774 6778888654
No 279
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=33.47 E-value=1.1e+02 Score=29.39 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=33.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++..|+.+|.+.+++.+... .+...++.+||+.++
T Consensus 180 ~~VlV~G~--G~vG~~avq~Ak~~Ga~Vi~~~~~~~----------~~~~~a~~lGa~~~i 228 (375)
T PLN02178 180 KRLGVNGL--GGLGHIAVKIGKAFGLRVTVISRSSE----------KEREAIDRLGADSFL 228 (375)
T ss_pred CEEEEEcc--cHHHHHHHHHHHHcCCeEEEEeCChH----------HhHHHHHhCCCcEEE
Confidence 55665543 78999999999999998555433221 135566889997544
No 280
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.38 E-value=3.5e+02 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=22.9
Q ss_pred CEEEecCC-chhHHHHHHHHHHHHcCCeEEEEe
Q 021235 96 DCIITIGG-IQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 96 ~~vVt~g~-s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
..+|| |+ +++--|+++|....+.|.++++.-
T Consensus 8 ~~lIT-Ga~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 8 KILIT-GMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34555 54 346789999999999999987753
No 281
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=33.32 E-value=39 Score=30.98 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=24.1
Q ss_pred CCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCch
Q 021235 221 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 260 (315)
Q Consensus 221 ~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~ 260 (315)
+|+|||..|+||..+.-- +-+ .++.+|.-+|.-+...
T Consensus 1 yD~iIVGsG~~G~v~A~r--Ls~-~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASR--LSE-AGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHH--HTT-STTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHH--Hhh-CCCCcEEEEEccccCc
Confidence 589999999888764322 222 3568999999887543
No 282
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=33.31 E-value=71 Score=31.25 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 101 IGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 101 ~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
.|| |-.|+.+|.+|+++|++++++-|..
T Consensus 7 lGG--GQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 7 LGG--GQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred EcC--cHHHHHHHHHHHhcCCEEEEecCCC
Confidence 476 8899999999999999999998654
No 283
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=33.18 E-value=42 Score=33.65 Aligned_cols=42 Identities=14% Similarity=-0.142 Sum_probs=30.3
Q ss_pred CCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhh
Q 021235 221 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 262 (315)
Q Consensus 221 ~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~ 262 (315)
.-.++|++|+|-+..-.+.+.+..+...+|++||........
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 347778888888887777777766778999999977544433
No 284
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.11 E-value=1.1e+02 Score=27.65 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=34.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ .|..|++++..|+.+|.+.+.+.+.. .+...++.+|++-++
T Consensus 144 ~~vlV~ga-~g~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 192 (320)
T cd08243 144 DTLLIRGG-TSSVGLAALKLAKALGATVTATTRSP-----------ERAALLKELGADEVV 192 (320)
T ss_pred CEEEEEcC-CChHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHhcCCcEEE
Confidence 45665654 57899999999999999965554332 145566779986544
No 285
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=33.02 E-value=1.2e+02 Score=27.81 Aligned_cols=57 Identities=23% Similarity=0.148 Sum_probs=33.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccc--hHHHHHhCCCEEEEEcCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIG--NLLVERLVGAHIELISKE 160 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~--n~~~~r~~GAeV~~v~~~ 160 (315)
++|+|+|-| +. -..+-..|+..|.++.+++.+..|.. .| -...+...|-+|.++.+.
T Consensus 109 ~~ILT~~~S-~~-v~~~l~~a~~~~~~~~V~v~es~P~~------eG~~~a~~L~~~gi~v~~i~d~ 167 (282)
T PF01008_consen 109 DTILTHGYS-ST-VERFLLSAKKKGKKFRVIVLESRPYN------EGRLMAKELAEAGIPVTLIPDS 167 (282)
T ss_dssp EEEEEES---SH-HHHHHHHHHHTTEEEEEEEE--TTTT------HHHTHHHHHHHTT-EEEEE-GG
T ss_pred eEEEEeCCc-hH-HHHHHHHHHHcCCeEEEEEccCCcch------hhhhHHHHhhhcceeEEEEech
Confidence 578888643 33 33333447788899999998877532 22 244556679888888753
No 286
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=32.83 E-value=59 Score=33.99 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=29.9
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhc-CCCCCeEEEEeccCCch
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWL-GTLKAKVHAFSVCDDPD 260 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~-~~~~~rVigV~~~g~~~ 260 (315)
..+|+||+..||.| +..+.++ .+|+++|.-.|+.|++.
T Consensus 56 ~~yDyIVVGgGtAG----cvlAarLSEn~~~~VLLLEaGg~~~ 94 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAG----CVLAARLSENPNWSVLLLEAGGDPP 94 (623)
T ss_pred cCCCEEEECCCchh----HHHHHhhccCCCceEEEEecCCCCc
Confidence 46999999988865 5555554 36899999999999884
No 287
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=32.81 E-value=1.1e+02 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 91 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
.+.|.++|+.+|-....=-.++|..+..+|++++++.+...
T Consensus 106 ~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~Da~~ 146 (161)
T cd00431 106 RERGIDTLVVCGIATDICVLATARDALDLGYRVIVVEDACA 146 (161)
T ss_pred HHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEEehhhcc
Confidence 45688899887654434445677888889999999876554
No 288
>PRK05650 short chain dehydrogenase; Provisional
Probab=32.81 E-value=3.4e+02 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=22.1
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
++..|+ +|.-|.++|..-...|.+.+++.+.
T Consensus 3 vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~ 33 (270)
T PRK05650 3 VMITGA-ASGLGRAIALRWAREGWRLALADVN 33 (270)
T ss_pred EEEecC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 333344 4788999998888899987766543
No 289
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=32.61 E-value=3.9e+02 Score=24.45 Aligned_cols=128 Identities=14% Similarity=0.076 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCc
Q 021235 106 SNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP 185 (315)
Q Consensus 106 GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (315)
+..+..+|.+.+..|.++.++ +.+.. ++ .....+.++.+-..+.... +.. ......+.+.+...+ ..
T Consensus 17 St~a~~la~~l~~~g~~vl~i-D~D~~----n~----~~~~~~~l~~~~~~i~~~~--~i~-~r~fD~Lve~i~~~~-~d 83 (241)
T PRK13886 17 SFIAATIAQYKASKGQKPLCI-DTDPV----NA----TFEGYKALNVRRLNIMDGD--EIN-TRNFDALVEMIASTE-GD 83 (241)
T ss_pred HHHHHHHHHHHHhCCCCEEEE-ECCCC----Cc----hhhhHHhcCCcceecccCC--ccc-hhhHHHHHHHHhccC-CC
Confidence 345677888888899987655 33321 11 2333455565544333211 111 111233444444333 23
Q ss_pred EEeCCCCCchhhHHHH--HHHHHHHHHHHhcCCCCCCCCeEEEeCCch-----hhHHHHHHHHhcCCCCCeEEEE
Q 021235 186 YVIPVGGSNSIGTWGY--IEAIKEIEQQLQTGTGGVKFDDIVVACGSG-----GTIAGLSLGSWLGTLKAKVHAF 253 (315)
Q Consensus 186 y~ip~g~~n~~~~~G~--~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG-----Gt~aGl~~~~k~~~~~~rVigV 253 (315)
.++-.+.++......| .....|+.++.+ .+.++..+=+| -|+.|+..-+.....+++++.+
T Consensus 84 vIIDngAs~~~~l~~yl~~n~l~~ll~e~g-------~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vvw 151 (241)
T PRK13886 84 VIIDNGASSFVPLSHYLISNQVPALLQDMG-------HELVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVVW 151 (241)
T ss_pred EEEECCCcchHHHHHHHHhCcHHHHHHHCC-------ceEEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEEE
Confidence 5676666666666666 234446666542 45555544344 4777776666655445666553
No 290
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=32.61 E-value=1.7e+02 Score=28.47 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCeEEEEecCCC
Q 021235 109 CRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 109 g~alA~aa~~lGl~~~ivvp~~~ 131 (315)
+.++-..|+..|.+.++|+.++.
T Consensus 180 al~vi~~A~~~gk~~~V~v~EtR 202 (356)
T PRK08334 180 VGAVLRVMHKDGTLKLLWVDETR 202 (356)
T ss_pred HHHHHHHHHHcCCeEEEEECCCC
Confidence 33444445555555555555444
No 291
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.58 E-value=4e+02 Score=24.55 Aligned_cols=38 Identities=16% Similarity=-0.002 Sum_probs=25.4
Q ss_pred HHHHHHc-CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEE
Q 021235 87 MADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 126 (315)
Q Consensus 87 l~~a~~~-G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~iv 126 (315)
.++..++ ++..|+ |+.++..+.+++-.+++.+++++..
T Consensus 58 a~~li~~~~v~aii--G~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 58 ADELVKDPEILGVV--GHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred HHHHhcccCceEEE--cCCCcHHHHHHHHHHhhcCceEEcc
Confidence 3444433 555555 6666677788888889999987754
No 292
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=32.58 E-value=1.2e+02 Score=29.49 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=28.1
Q ss_pred HHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 91 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 91 ~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
++...+.||..|+.+.|.. +|.+|+.+|++++++++.
T Consensus 86 ~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~P 122 (385)
T TIGR00215 86 KQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYISP 122 (385)
T ss_pred HhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeCC
Confidence 3456788998887666764 567889999999998643
No 293
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=32.54 E-value=1.3e+02 Score=28.50 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=34.1
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++..|+.+|.+.++++.... .+..+++.+|++-++
T Consensus 178 ~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~----------~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 178 DSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDD----------RKLEWAREFGATHTV 226 (358)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCceEE
Confidence 45555553 67899999999999997555554332 257788899996544
No 294
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=32.54 E-value=1.4e+02 Score=27.91 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=34.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |..|++++..|+.+|.+.++.+.... .+....+.+|++-++
T Consensus 168 ~~vlI~g~--g~iG~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~g~~~~v 216 (351)
T cd08285 168 DTVAVFGI--GPVGLMAVAGARLRGAGRIIAVGSRP----------NRVELAKEYGATDIV 216 (351)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCceEe
Confidence 45555543 68999999999999997555554432 257778889986443
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=32.26 E-value=1.3e+02 Score=28.78 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=37.8
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHh-CCCEEEEEcC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIELISK 159 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~-~GAeV~~v~~ 159 (315)
+|+..|. |.-|+..+++++.+|-..+++++... .++++.+. +|++++.-..
T Consensus 171 ~V~V~Ga--GpIGLla~~~a~~~Ga~~Viv~d~~~----------~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGA--GPIGLLAIALAKLLGASVVIVVDRSP----------ERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCH----------HHHHHHHHhCCCeEeecCc
Confidence 5665665 88999999999999999999986543 25777776 7777665443
No 296
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=32.24 E-value=1.4e+02 Score=28.46 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=32.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| + |.-|++++..|+.+|.+.+++..... .+....+.+||+-++
T Consensus 185 ~~VlV~G-~-G~vG~~avq~Ak~~Ga~vi~~~~~~~----------~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 185 KHLGVAG-L-GGLGHVAVKIGKAFGLKVTVISSSSN----------KEDEAINRLGADSFL 233 (360)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHCCCEEEEEeCCcc----------hhhhHHHhCCCcEEE
Confidence 4555554 3 78999999999999998555433221 124566789997544
No 297
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=32.24 E-value=1.1e+02 Score=25.80 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=35.0
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.|+..|+ ||-|.+.|..+..+|.+.+++= .. ..+....+..++..+.+.
T Consensus 22 ~vvv~G~--G~vg~gA~~~~~~lGa~v~~~d-~~----------~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGA--GRVGQGAAEIAKGLGAEVVVPD-ER----------PERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEEST--SHHHHHHHHHHHHTT-EEEEEE-SS----------HHHHHHHHHTTTEESEET
T ss_pred EEEEECC--CHHHHHHHHHHhHCCCEEEecc-CC----------HHHHHhhhcccCceEEEc
Confidence 3454554 8999999999999999977763 21 124666778888877774
No 298
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=32.17 E-value=2e+02 Score=27.88 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcC-----------------CCCCeEEEEecc
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLG-----------------TLKAKVHAFSVC 256 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~-----------------~~~~rVigV~~~ 256 (315)
++|. |+++|+|..+ =++++.... .+.+++|.|...
T Consensus 86 ~~D~-IIaiGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 86 KVDF-ILAVGGGSVI-DSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred CCCE-EEEeCChHHH-HHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 4654 6788876543 333333211 245788998874
No 299
>PRK13054 lipid kinase; Reviewed
Probab=32.07 E-value=1e+02 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCeEEEeCCchhhHHHHHHHHhcCCCCC-eEEEEeccCCchh
Q 021235 221 FDDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFSVCDDPDY 261 (315)
Q Consensus 221 ~D~ivv~vGtGGt~aGl~~~~k~~~~~~-rVigV~~~g~~~~ 261 (315)
+|. |+.+|+=||+..++.++....... -.+||-|.|+...
T Consensus 57 ~d~-vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTgNd 97 (300)
T PRK13054 57 VAT-VIAGGGDGTINEVATALAQLEGDARPALGILPLGTAND 97 (300)
T ss_pred CCE-EEEECCccHHHHHHHHHHhhccCCCCcEEEEeCCcHhH
Confidence 554 446666678888888876432121 2378888887543
No 300
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.06 E-value=2.4e+02 Score=21.79 Aligned_cols=47 Identities=9% Similarity=-0.001 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCchhhH---HHHHHHHhcCCCCCeEEEEecc
Q 021235 206 KEIEQQLQTGTGGVKFDDIVVACGSGGTI---AGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 206 ~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~---aGl~~~~k~~~~~~rVigV~~~ 256 (315)
.|+.+++.+ .+||.|.+++-.+.+. .-++...|..+|+++|+.--+.
T Consensus 41 ~~l~~~~~~----~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 41 EELVEALRA----ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHH----TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHhc----CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 345454443 3578887776444333 3344445556777777644433
No 301
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=32.05 E-value=3.6e+02 Score=23.87 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=22.5
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+++..|+ ++.-|.++|....+.|.+++++.+
T Consensus 10 ~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 10 TLVISGG-TRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEcC
Confidence 3433454 468899999999999999776644
No 302
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=31.55 E-value=1.1e+02 Score=29.20 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=34.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ .|-.|++++.+|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 195 ~~vlV~ga-~g~iG~a~~~lak~~G~~vv~~~~s~-----------~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGA-SGGLGSMAIQLARAAGANPVAVVSSE-----------EKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCeEEEEeCCH-----------HHHHHHHHcCCCEEE
Confidence 45655553 47789999999999999976554321 256677889987554
No 303
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=31.52 E-value=1.1e+02 Score=29.47 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=34.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
+.|+..|+ +|..|++++..|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 191 ~~vlV~Ga-~g~vG~~ai~~ak~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGA-AGGLGSYATQLARAGGGNPVAVVSSP-----------EKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHcCCCEEe
Confidence 45555553 57899999999999999865553221 246667779987654
No 304
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.43 E-value=1.7e+02 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCc
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 194 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n 194 (315)
.+..|.|||+|..|+.. +.+. .-++.+.+.+++..+..+++-.+.+.
T Consensus 108 ~D~~~r~ga~V~~v~~~-~G~~---~~le~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 108 ADCARRYGAEVDVVEAD-IGQA---VPLEEITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred HHHHHhhCceeeEEecC-cccC---ccHHHHHHHHHhcCCceEEEEecCcc
Confidence 67788899999888653 4332 22355666777766667777666543
No 305
>PRK08226 short chain dehydrogenase; Provisional
Probab=31.35 E-value=3.7e+02 Score=23.71 Aligned_cols=31 Identities=10% Similarity=-0.040 Sum_probs=23.1
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+++..|+ +|.-|.++|......|.+++++-+
T Consensus 8 ~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 8 TALITGA-LQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCCEEEEecC
Confidence 3443454 478999999999999999776643
No 306
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.34 E-value=3.6e+02 Score=23.65 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCEEEecCCch-hHHH-HHHHHHHHHcCCeEEEEecCCC-----cccCCCCCccch--HHHHHhCC-CEEE
Q 021235 86 LMADAVAQGADCIITIGGIQ-SNHC-RAAAVAAKYLNLDCYLILRTSK-----VLVDQDPGLIGN--LLVERLVG-AHIE 155 (315)
Q Consensus 86 ll~~a~~~G~~~vVt~g~s~-GNhg-~alA~aa~~lGl~~~ivvp~~~-----~~~~~~p~~~~n--~~~~r~~G-AeV~ 155 (315)
++.....++.+.+|..+... .... ......+...|++++.+-.... +....+....++ ...+...| .++.
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~~i~ 126 (273)
T cd06292 47 YVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGHRRIG 126 (273)
T ss_pred HHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEE
Confidence 35666677889888754211 1111 1223345678999888853211 101001000111 11222235 3566
Q ss_pred EEcCCcccccChHHHHHHHHHHHHHhCC---CcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchh
Q 021235 156 LISKEEYSKIGSVTLTNILKEKLLKEGR---RPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGG 232 (315)
Q Consensus 156 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~---~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGG 232 (315)
++.... +......+.+...+.+++.+- ..++.... .+. ..+.++.+++.. ..+|+||++ +..
T Consensus 127 ~i~~~~-~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~-~~~-------~~~~~~~~~~l~----~~~~ai~~~--~d~ 191 (273)
T cd06292 127 FASGPG-RTVPRRRKIAGFRAALEEAGLEPPEALVARGM-FSV-------EGGQAAAVELLG----SGPTAIVAA--SDL 191 (273)
T ss_pred EEeCCc-ccccHHHHHHHHHHHHHHcCCCCChhheEeCC-CCH-------HHHHHHHHHHhc----CCCCEEEEc--CcH
Confidence 664321 111112233444444544331 11122211 111 123344444432 138988866 567
Q ss_pred hHHHHHHHHhcCCC----CCeEEEEecc
Q 021235 233 TIAGLSLGSWLGTL----KAKVHAFSVC 256 (315)
Q Consensus 233 t~aGl~~~~k~~~~----~~rVigV~~~ 256 (315)
.+.|+..++++.+. ++.|+|++-.
T Consensus 192 ~a~g~~~~l~~~g~~ip~di~ii~~d~~ 219 (273)
T cd06292 192 MALGAIRAARRRGLRVPEDVSVVGYDDS 219 (273)
T ss_pred HHHHHHHHHHHcCCCCCcceEEEeeCCc
Confidence 78899999988763 5688888743
No 307
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=31.30 E-value=76 Score=23.51 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=24.1
Q ss_pred HcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 92 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 92 ~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..+...||+..|+--.|+ |..||.+|+++++=++
T Consensus 28 ~~~~~Giv~~~Gg~~SH~---aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 28 LQRVAGIVTEEGGPTSHA---AILARELGIPAIVGVG 61 (80)
T ss_dssp HTTSSEEEESSSSTTSHH---HHHHHHTT-EEEESTT
T ss_pred hhheEEEEEEcCCccchH---HHHHHHcCCCEEEeec
Confidence 355677888766444444 8899999999998765
No 308
>PRK06701 short chain dehydrogenase; Provisional
Probab=31.22 E-value=4.1e+02 Score=24.25 Aligned_cols=54 Identities=24% Similarity=0.138 Sum_probs=32.3
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+|+ |+ +|--|.++|....+.|.+++++....... .......++..|.++..+.
T Consensus 49 iLIt-Ga-sggIG~~la~~l~~~G~~V~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 49 ALIT-GG-DSGIGRAVAVLFAKEGADIAIVYLDEHED------ANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred EEEe-CC-CcHHHHHHHHHHHHCCCEEEEEeCCcchH------HHHHHHHHHhcCCeEEEEE
Confidence 3444 44 47889999999999999987775543210 0112233445576665554
No 309
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=31.12 E-value=2.8e+02 Score=26.97 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=8.8
Q ss_pred CCCeEEEeCCchhhH
Q 021235 220 KFDDIVVACGSGGTI 234 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~ 234 (315)
++|. |+++|+|..+
T Consensus 88 ~~D~-IiaiGGGS~i 101 (383)
T PRK09860 88 NCDS-VISLGGGSPH 101 (383)
T ss_pred CCCE-EEEeCCchHH
Confidence 4554 6778876654
No 310
>PRK05599 hypothetical protein; Provisional
Probab=31.11 E-value=2.8e+02 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=18.5
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+|| |+ ++.-|.++|..-.+ |.+++++-+
T Consensus 4 lIt-Ga-s~GIG~aia~~l~~-g~~Vil~~r 31 (246)
T PRK05599 4 LIL-GG-TSDIAGEIATLLCH-GEDVVLAAR 31 (246)
T ss_pred EEE-eC-ccHHHHHHHHHHhC-CCEEEEEeC
Confidence 444 54 46788888887764 877666644
No 311
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.97 E-value=2e+02 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.040 Sum_probs=23.1
Q ss_pred CCCeEEEeCC-chhhHHHHHH----HHhcCCCCCeEEEEeccCC
Q 021235 220 KFDDIVVACG-SGGTIAGLSL----GSWLGTLKAKVHAFSVCDD 258 (315)
Q Consensus 220 ~~D~ivv~vG-tGGt~aGl~~----~~k~~~~~~rVigV~~~g~ 258 (315)
..|.||+..| +|||=+|.+- .+++.+. .+++|-+...
T Consensus 84 ~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~--~~~~vvt~Pf 125 (303)
T cd02191 84 HVDMVFITAGLGGGTGTGGAPVVAEHLKRIGT--LTVAVVTLPF 125 (303)
T ss_pred CCCEEEEEeccCCccchhHHHHHHHHHHHhCC--CEEEEEeCCc
Confidence 4788888877 5566566554 3445544 5677766653
No 312
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=30.96 E-value=1.8e+02 Score=28.11 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCcccCCCCCccch---HHHHHhCCCEEEEEcC
Q 021235 111 AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISK 159 (315)
Q Consensus 111 alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n---~~~~r~~GAeV~~v~~ 159 (315)
++-..|.+.|.++++++.++.|. ..|. ...+...|-.+.++.+
T Consensus 169 ~~i~~A~~~gk~~~V~v~EsRP~------~qG~~lta~eL~~~GI~vtlI~D 214 (344)
T PRK05720 169 APIYAAKEKGIDIHVYADETRPR------LQGARLTAWELYQAGIDVTVITD 214 (344)
T ss_pred HHHHHHHHcCCceEEEEcCCCCh------hhhHHHHHHHHHHCCCCEEEEcc
Confidence 34446667788888888887653 2333 2345566888877765
No 313
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.96 E-value=3.8e+02 Score=23.83 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=55.3
Q ss_pred HHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC-Cccccc
Q 021235 87 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSKI 165 (315)
Q Consensus 87 l~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~-~~~~~~ 165 (315)
++++.+.|.+-+|+-+ .-..++.+|+++|+.+ +|.... | ..+.....+|++++.+=. +.+
T Consensus 73 a~~a~~aGA~FivsP~-----~~~~v~~~~~~~~i~~---iPG~~T-----p---tEi~~A~~~Ga~~vKlFPA~~~--- 133 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPG-----LTPELAKHAQDHGIPI---IPGVAT-----P---SEIMLALELGITALKLFPAEVS--- 133 (204)
T ss_pred HHHHHHcCCCEEECCC-----CCHHHHHHHHHcCCcE---ECCCCC-----H---HHHHHHHHCCCCEEEECCchhc---
Confidence 5667788999888653 2358889999999854 555431 1 237778889999876632 211
Q ss_pred ChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHH
Q 021235 166 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTW 199 (315)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~ 199 (315)
+-..+++ .++.--+..-++|.||-++.+..
T Consensus 134 GG~~yik----al~~plp~i~~~ptGGV~~~N~~ 163 (204)
T TIGR01182 134 GGVKMLK----ALAGPFPQVRFCPTGGINLANVR 163 (204)
T ss_pred CCHHHHH----HHhccCCCCcEEecCCCCHHHHH
Confidence 1123433 34332234557888887775543
No 314
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=30.92 E-value=2e+02 Score=21.29 Aligned_cols=42 Identities=17% Similarity=-0.004 Sum_probs=32.3
Q ss_pred CCCCeEEEeCC-chhhHHHHHHHHhcCCCCCeEEEEeccCCch
Q 021235 219 VKFDDIVVACG-SGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 260 (315)
Q Consensus 219 ~~~D~ivv~vG-tGGt~aGl~~~~k~~~~~~rVigV~~~g~~~ 260 (315)
..||.+++... .++....++..++..+++++|+.+....+..
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~ 84 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSD 84 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHH
T ss_pred cCceEEEEEeeeccccccccccccccccccccEEEecCCCCHH
Confidence 35999999975 3456667788888888999999999776643
No 315
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=30.90 E-value=3.7e+02 Score=23.61 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
...+...|++|+.+.+.. ...+...+.+.+.+.+..+++.+-.++..... +..++.+++ ..+|.
T Consensus 27 a~~l~~~G~~V~~~~r~~-------~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~---~~~~~~~~~------~~~d~ 90 (255)
T PRK07523 27 AEGLAQAGAEVILNGRDP-------AKLAAAAESLKGQGLSAHALAFDVTDHDAVRA---AIDAFEAEI------GPIDI 90 (255)
T ss_pred HHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHhcCceEEEEEccCCCHHHHHH---HHHHHHHhc------CCCCE
Q ss_pred EEEeCCch
Q 021235 224 IVVACGSG 231 (315)
Q Consensus 224 ivv~vGtG 231 (315)
||..+|.+
T Consensus 91 li~~ag~~ 98 (255)
T PRK07523 91 LVNNAGMQ 98 (255)
T ss_pred EEECCCCC
No 316
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=30.84 E-value=1.6e+02 Score=28.58 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
+.|...|. |-.|.....+|+.+|.+.+.+-... .|.++.+.+||+.+....
T Consensus 168 ~~V~I~G~--GGlGh~avQ~Aka~ga~Via~~~~~-----------~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 168 KWVAVVGA--GGLGHMAVQYAKAMGAEVIAITRSE-----------EKLELAKKLGADHVINSS 218 (339)
T ss_pred CEEEEECC--cHHHHHHHHHHHHcCCeEEEEeCCh-----------HHHHHHHHhCCcEEEEcC
Confidence 34444443 4567777888889997777775432 378899999999988765
No 317
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.77 E-value=3.7e+02 Score=23.54 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=26.4
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCC----CCCeEEEEecc
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGT----LKAKVHAFSVC 256 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~----~~~rVigV~~~ 256 (315)
.++|+||+. +..++.|+..++++.+ .++.|+|++-.
T Consensus 174 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 213 (265)
T cd06285 174 SPPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYNDI 213 (265)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 358888876 5557779999999876 35577787754
No 318
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=30.65 E-value=1.3e+02 Score=27.55 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=34.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
+.|+..| ..|..|++++..|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 142 ~~vlI~g-a~g~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 142 QSVLIHA-GASGVGTAAAQLAEKYGAATIITTSSE-----------EKVDFCKKLAAIILI 190 (334)
T ss_pred CEEEEEc-CCchHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEEE
Confidence 4565555 358999999999999999876654322 245566779986444
No 319
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=30.59 E-value=66 Score=29.06 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=23.3
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+..|| |-.|.+.|..++++|++++++=.
T Consensus 3 vvIIG~--G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 3 VIIIGA--GPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEec
Confidence 334566 78899999999999999887754
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=30.57 E-value=1.9e+02 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=27.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
+.|+..|+ |..|.-+|...+.+|.+++++.+...
T Consensus 145 ~~vvViGg--G~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGA--GTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 44555666 79999999999999999999876543
No 321
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=30.53 E-value=4.3e+02 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC-------------CCeEEEEecc
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL-------------KAKVHAFSVC 256 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~-------------~~rVigV~~~ 256 (315)
.++|+|||. +..++.|+..++++.+. ++.|+|++-.
T Consensus 242 ~~~~ai~~~--nd~~A~g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~~ 290 (342)
T PRK10014 242 PTISAVVCY--NETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDV 290 (342)
T ss_pred CCCCEEEEC--CcHHHHHHHHHHHHcCCCCCCccccccccCceEEEEecCc
Confidence 358998864 66777889888887652 5677777764
No 322
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=30.51 E-value=3.3e+02 Score=25.71 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCeEEEEecCCCcccCCCCC-ccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHh-CCCcEEe
Q 021235 111 AAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE-GRRPYVI 188 (315)
Q Consensus 111 alA~aa~~lGl~~~ivvp~~~~~~~~~p~-~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~-~~~~y~i 188 (315)
++.|.|+++|++..-++... +..++.+. +..=+..++..+..++++... +.. ..++ .+.++ +-....+
T Consensus 212 af~Yf~~~ygl~~~~~~~~~-~~~eps~~~l~~l~~~ik~~~v~~If~e~~-~~~----~~~~----~la~e~g~~v~~l 281 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVN-PEIQPGAQRLHEIRTQLVEQKATCVFAEPQ-FRP----AVIE----SVAKGTSVRMGTL 281 (311)
T ss_pred hHHHHHHhCCCceeeeeccC-CCCCCCHHHHHHHHHHHHHcCCCEEEecCC-CCh----HHHH----HHHHhcCCeEEEe
Confidence 88999999999987655322 11111221 123366778889999998863 321 2323 34443 3222333
Q ss_pred -CCCCCchhhHHHHHHHHHHHHHHHh
Q 021235 189 -PVGGSNSIGTWGYIEAIKEIEQQLQ 213 (315)
Q Consensus 189 -p~g~~n~~~~~G~~t~a~EI~~Q~~ 213 (315)
|.+.........|..+..+..+++.
T Consensus 282 dpl~~~~~~~~~~Y~~~m~~n~~~l~ 307 (311)
T PRK09545 282 DPLGTNIKLGKDSYSEFLSQLANQYA 307 (311)
T ss_pred ccccccccCCHhHHHHHHHHHHHHHH
Confidence 4432211112467777777776654
No 323
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.40 E-value=1.1e+02 Score=28.83 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=23.0
Q ss_pred CCCeEEEeCC-chhhHHHHHHHH----hcCCCCCeEEEEeccCCc
Q 021235 220 KFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCDDP 259 (315)
Q Consensus 220 ~~D~ivv~vG-tGGt~aGl~~~~----k~~~~~~rVigV~~~g~~ 259 (315)
..|.||+.+| +|||=+|.+..+ ++.+ ..+++|-+....
T Consensus 84 ~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g--~~~~~vvt~Pf~ 126 (304)
T cd02201 84 GADMVFITAGMGGGTGTGAAPVIAKIAKEMG--ALTVAVVTKPFS 126 (304)
T ss_pred CCCEEEEeeccCCCcchhHHHHHHHHHHHcC--CCEEEEEeCCcc
Confidence 4788888877 566656655443 3333 356676665543
No 324
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=30.33 E-value=1.5e+02 Score=27.80 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=32.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| + |.-|++++..|+.+|++.++++.... .+...++.+|++-++
T Consensus 179 ~~vlI~g-~-g~vG~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~g~~~vi 227 (361)
T cd08231 179 DTVVVQG-A-GPLGLYAVAAAKLAGARRVIVIDGSP----------ERLELAREFGADATI 227 (361)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCCeEE
Confidence 4555454 3 78999999999999994334332221 246677889986443
No 325
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=30.30 E-value=2.5e+02 Score=27.19 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhc-----------------CCCCCeEEEEecc
Q 021235 205 IKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-----------------GTLKAKVHAFSVC 256 (315)
Q Consensus 205 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~-----------------~~~~~rVigV~~~ 256 (315)
..++.+++.+ .++| +|+++|+|..+ =+++++.. ..+..+++.|...
T Consensus 74 v~~~~~~~~~----~~~D-~IIavGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 74 VKDGLAVFKK----EGCD-FIISIGGGSPH-DCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCcHHH-HHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 4455555543 2454 66788887653 33333211 1245788888875
No 326
>PRK07035 short chain dehydrogenase; Provisional
Probab=30.17 E-value=3.8e+02 Score=23.46 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
...+...|++|+.+.+.. +..+.+.+++.+.+....+++....+.....- +..++.+++ +++|.
T Consensus 25 ~~~l~~~G~~Vi~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~~~~~~~~------~~id~ 88 (252)
T PRK07035 25 AKLLAQQGAHVIVSSRKL-------DGCQAVADAIVAAGGKAEALACHIGEMEQIDA---LFAHIRERH------GRLDI 88 (252)
T ss_pred HHHHHHCCCEEEEEeCCH-------HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH---HHHHHHHHc------CCCCE
Q ss_pred EEEeCC
Q 021235 224 IVVACG 229 (315)
Q Consensus 224 ivv~vG 229 (315)
||..+|
T Consensus 89 li~~ag 94 (252)
T PRK07035 89 LVNNAA 94 (252)
T ss_pred EEECCC
No 327
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.10 E-value=2.2e+02 Score=27.10 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=5.3
Q ss_pred HHHHcCCeEEEEe
Q 021235 115 AAKYLNLDCYLIL 127 (315)
Q Consensus 115 aa~~lGl~~~ivv 127 (315)
..+++|-++.|+.
T Consensus 17 ~~~~~~~r~livt 29 (351)
T cd08170 17 YLARLGKRALIIA 29 (351)
T ss_pred HHHHhCCeEEEEE
Confidence 3344443443443
No 328
>PRK09242 tropinone reductase; Provisional
Probab=30.05 E-value=3.8e+02 Score=23.52 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=23.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
..+|+ |+ +|.-|.++|......|.+++++.+.
T Consensus 11 ~~lIt-Ga-~~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 11 TALIT-GA-SKGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 33454 44 4789999999999999987766543
No 329
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=30.01 E-value=1.1e+02 Score=27.86 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCC----CEEEecCCc--hhHHHHHHHHHHHHcCCe---EEEEecCCCcccCCCCCc-cchHHH----
Q 021235 81 RKLEFLMADAVAQGA----DCIITIGGI--QSNHCRAAAVAAKYLNLD---CYLILRTSKVLVDQDPGL-IGNLLV---- 146 (315)
Q Consensus 81 R~l~~ll~~a~~~G~----~~vVt~g~s--~GNhg~alA~aa~~lGl~---~~ivvp~~~~~~~~~p~~-~~n~~~---- 146 (315)
-.+..++.++++.|. -++++-||. +-+|..+++-.|++.|++ .|++++.... .|.. .+-+..
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt----~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDT----PPKSALKYLEELEEK 89 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-----TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCC----CcchHHHHHHHHHHH
Confidence 345556666665543 246677764 458999999999999988 6789987542 1321 111222
Q ss_pred HHhCC-CEEEEEcCCcccccChHHHHHHHHHHH
Q 021235 147 ERLVG-AHIELISKEEYSKIGSVTLTNILKEKL 178 (315)
Q Consensus 147 ~r~~G-AeV~~v~~~~~~~~~~~~~~~~~~~~l 178 (315)
+...| ++|-.|...-| .-+++..|+++.+.+
T Consensus 90 l~~~~~g~IAsv~GRyy-aMDRD~rWeRv~~Ay 121 (223)
T PF06415_consen 90 LAEIGIGRIASVSGRYY-AMDRDKRWERVEKAY 121 (223)
T ss_dssp HHHHTCTEEEEEEECCC-CT--TS-HHHHHHHH
T ss_pred HHhhCCceEEEEeceee-eeccccCHHHHHHHH
Confidence 22233 47766654323 333445666654443
No 330
>PRK06194 hypothetical protein; Provisional
Probab=29.85 E-value=3.9e+02 Score=23.91 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=31.9
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.+|| ||+ |.-|.++|....+.|.+++++-+.... .......+...|.++..+..
T Consensus 9 vlVt-Gas-ggIG~~la~~l~~~G~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 9 AVIT-GAA-SGFGLAFARIGAALGMKLVLADVQQDA-------LDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred EEEe-CCc-cHHHHHHHHHHHHCCCEEEEEeCChHH-------HHHHHHHHHhcCCeEEEEEC
Confidence 3454 544 788999999888999987766432211 01123334445777766553
No 331
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.84 E-value=4.4e+02 Score=24.14 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 82 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 82 ~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
+.+.++.++.+.|++.|+..--+ -.+..-+...|+++|++.++++...+
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45555666777777766544333 24555666777777777776655444
No 332
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=29.81 E-value=4.2e+02 Score=23.89 Aligned_cols=160 Identities=11% Similarity=0.026 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc-----ccCCCCCccch--HH-HHHhCC--CE
Q 021235 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV-----LVDQDPGLIGN--LL-VERLVG--AH 153 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~-----~~~~~p~~~~n--~~-~~r~~G--Ae 153 (315)
..++..+..++.+.+|..+ ............++..|++++.+-....+ ....+....++ .+ +.+..| .+
T Consensus 72 ~~~~~~l~~~~~dgiii~~-~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~~~~~ 150 (295)
T PRK10653 72 LANVQDLTVRGTKILLINP-TDSDAVGNAVKMANQANIPVITLDRGATKGEVVSHIASDNVAGGKMAGDFIAKKLGEGAK 150 (295)
T ss_pred HHHHHHHHHcCCCEEEEcC-CChHHHHHHHHHHHHCCCCEEEEccCCCCCceeeEEccChHHHHHHHHHHHHHHhCCCce
Confidence 3445666677888887643 33333334456677789998887532211 01011100111 11 223334 34
Q ss_pred EEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhh
Q 021235 154 IELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 233 (315)
Q Consensus 154 V~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 233 (315)
+..+... ........+.+...+.+++.+...+.......+. ..++. ...++.+.- .++|.||+ .+-..
T Consensus 151 i~~~~~~-~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~--~~~~~-~~~~~l~~~------~~~~ai~~--~~d~~ 218 (295)
T PRK10653 151 VIQLEGI-AGTSAARERGEGFKQAVAAHKFNVLASQPADFDR--TKGLN-VMQNLLTAH------PDVQAVFA--QNDEM 218 (295)
T ss_pred EEEEEcc-CCCccHHHHHHHHHHHHhhCCCEEEEecCCCCCH--HHHHH-HHHHHHHhC------CCcCEEEE--CCChh
Confidence 6555421 1111112233334444554432222121221111 12332 233443321 34777766 34455
Q ss_pred HHHHHHHHhcCCC-CCeEEEEecc
Q 021235 234 IAGLSLGSWLGTL-KAKVHAFSVC 256 (315)
Q Consensus 234 ~aGl~~~~k~~~~-~~rVigV~~~ 256 (315)
+.|+..++++.+. ++.|+|++-.
T Consensus 219 A~g~l~al~~~G~~dv~vig~d~~ 242 (295)
T PRK10653 219 ALGALRALQTAGKSDVMVVGFDGT 242 (295)
T ss_pred HHHHHHHHHHcCCCceEEEEeCCC
Confidence 6688999998876 7888888753
No 333
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.71 E-value=3.9e+02 Score=23.57 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=50.1
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHHHhhhcC---------------CCCCCCeE
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA---------------GVDSRDIV 283 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g~~~---------------~~~~~dvv 283 (315)
..++.++.-+|.|+-..++-.+ ..+|+.||++++...... +.+.+=++.++. +...-|.+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~---~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~dai 106 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEAL---ELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAI 106 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHH---HHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEE
Confidence 5688899999988888777766 468999999999865432 222222333333 12235566
Q ss_pred EecCCcccchHHHHHHHHH
Q 021235 284 NIQNVSVYMTFKNILMNIL 302 (315)
Q Consensus 284 ~v~e~~~~~~~~~~~~~~~ 302 (315)
-|--+.....+++.+...+
T Consensus 107 FIGGg~~i~~ile~~~~~l 125 (187)
T COG2242 107 FIGGGGNIEEILEAAWERL 125 (187)
T ss_pred EECCCCCHHHHHHHHHHHc
Confidence 6665555555666665543
No 334
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=29.69 E-value=2.7e+02 Score=26.52 Aligned_cols=13 Identities=0% Similarity=-0.003 Sum_probs=5.4
Q ss_pred HHHHHcCCeEEEE
Q 021235 114 VAAKYLNLDCYLI 126 (315)
Q Consensus 114 ~aa~~lGl~~~iv 126 (315)
..++.+|-++.+|
T Consensus 16 ~~~~~~g~~~liv 28 (349)
T cd08550 16 AILSTFGSKVAVV 28 (349)
T ss_pred HHHHHcCCeEEEE
Confidence 3344445443333
No 335
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=29.67 E-value=1.6e+02 Score=28.43 Aligned_cols=69 Identities=17% Similarity=0.031 Sum_probs=33.6
Q ss_pred CCCeEEEeCC-chhhHHHHHHHH----hcCCCCCeEEEEeccCCchhhHHHHHHHHhhhcC-CCCCCCeEEecCCcc
Q 021235 220 KFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA-GVDSRDIVNIQNVSV 290 (315)
Q Consensus 220 ~~D~ivv~vG-tGGt~aGl~~~~----k~~~~~~rVigV~~~g~~~~~~~~i~~l~~g~~~-~~~~~dvv~v~e~~~ 290 (315)
..|.||+.+| +|||=+|.+..+ ++. ...+++|-+.........+..+-..++.. ...+|-++.+++.++
T Consensus 101 ~~D~vfI~aglGGGTGSG~apvia~~ake~--~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L 175 (349)
T TIGR00065 101 GADMVFITAGMGGGTGTGAAPVVAKIAKEL--GALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKL 175 (349)
T ss_pred CCCEEEEEEeccCccchhHHHHHHHHHHHc--CCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHH
Confidence 4788888877 445655655433 333 35677776655332222111222222221 123455666666544
No 336
>PRK09126 hypothetical protein; Provisional
Probab=29.65 E-value=64 Score=30.80 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+..|| |=.|.++|.+.++.|++++++=..
T Consensus 6 viIvGg--G~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 6 IVVVGA--GPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 333465 778999999999999998887544
No 337
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=29.62 E-value=3e+02 Score=27.07 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
...++.+++.+ .++|. |+++|+|..+
T Consensus 68 ~v~~~~~~~~~----~~~D~-IIaiGGGSvi 93 (414)
T cd08190 68 SFKDAIAFAKK----GQFDA-FVAVGGGSVI 93 (414)
T ss_pred HHHHHHHHHHh----cCCCE-EEEeCCccHH
Confidence 33455555543 24554 6888887655
No 338
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=29.61 E-value=3.7e+02 Score=26.18 Aligned_cols=100 Identities=20% Similarity=0.106 Sum_probs=56.2
Q ss_pred CCeEEEEeCCCCCCCCchhH-HHHHHHHHHHHHHcCCCEEE---ecCCchhHH----HHHHHHHHHHcCCeEEEEe-cCC
Q 021235 60 NTEVWLKRDDLSGMQLSGNK-VRKLEFLMADAVAQGADCII---TIGGIQSNH----CRAAAVAAKYLNLDCYLIL-RTS 130 (315)
Q Consensus 60 g~~v~vKrEdl~~~~~gg~K-~R~l~~ll~~a~~~G~~~vV---t~g~s~GNh----g~alA~aa~~lGl~~~ivv-p~~ 130 (315)
.+.+.+|...-+... ...+ ...+..-+++|++.|++.|. -.|+..-+. ...++..|.++|++.++.+ |..
T Consensus 125 ~iplIlkln~~t~l~-~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG 203 (348)
T PRK09250 125 KIPFILKLNHNELLS-YPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRN 203 (348)
T ss_pred CCCEEEEeCCCCCCC-CCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccC
Confidence 457888887644310 1112 33344448899999998653 344322222 2356788999999988844 333
Q ss_pred CcccCC-C----CCc-cchHHHHHhCCCEEEEEcCC
Q 021235 131 KVLVDQ-D----PGL-IGNLLVERLVGAHIELISKE 160 (315)
Q Consensus 131 ~~~~~~-~----p~~-~~n~~~~r~~GAeV~~v~~~ 160 (315)
....++ + |+. ..-....-.+||+++-+...
T Consensus 204 ~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 204 SAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLP 239 (348)
T ss_pred cccCCcccccccHHHHHHHHHHHHHHcCCEEEecCC
Confidence 211111 1 111 11134555789999998753
No 339
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=29.59 E-value=1.8e+02 Score=26.94 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=31.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 154 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV 154 (315)
++|+..| .|..|++++..|+.+|+..++++.... .+...++.+|+.+
T Consensus 169 ~~vlI~g--~g~vg~~~~~~a~~~g~~~v~~~~~~~----------~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVIG--CGPVGLCAVLSAQVLGAARVFAVDPVP----------ERLERAAALGAEP 215 (344)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHcCCceEEEEcCCH----------HHHHHHHHhCCeE
Confidence 4555554 378999999999999984344443221 2466777899864
No 340
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=29.55 E-value=1.9e+02 Score=26.59 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=31.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 154 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV 154 (315)
++|+..| .|..|++++..|+.+|++.+++.+... +...++.+|++-
T Consensus 169 ~~vlV~g--~g~vg~~~~~la~~~g~~v~~~~~~~~-----------~~~~~~~~g~~~ 214 (329)
T cd08298 169 QRLGLYG--FGASAHLALQIARYQGAEVFAFTRSGE-----------HQELARELGADW 214 (329)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHCCCeEEEEcCChH-----------HHHHHHHhCCcE
Confidence 4555454 367899999999999987665544321 455667789753
No 341
>PRK07791 short chain dehydrogenase; Provisional
Probab=29.48 E-value=4.4e+02 Score=23.98 Aligned_cols=31 Identities=23% Similarity=0.019 Sum_probs=22.7
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
..||| |++ +--|.++|....+.|.+++++..
T Consensus 8 ~~lIT-Gas-~GIG~aia~~la~~G~~vii~~~ 38 (286)
T PRK07791 8 VVIVT-GAG-GGIGRAHALAFAAEGARVVVNDI 38 (286)
T ss_pred EEEEE-CCC-chHHHHHHHHHHHCCCEEEEeeC
Confidence 34554 543 67899999999999998777643
No 342
>PRK06753 hypothetical protein; Provisional
Probab=29.29 E-value=73 Score=30.18 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=23.3
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+..|| |=.|.++|...++.|++++|+=.
T Consensus 3 V~IvGg--G~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 3 IAIIGA--GIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEec
Confidence 444566 78899999999999999888743
No 343
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.27 E-value=4.1e+02 Score=23.62 Aligned_cols=201 Identities=11% Similarity=-0.026 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc-------ccCCCCCccchH---HHHHhC-CC-
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV-------LVDQDPGLIGNL---LVERLV-GA- 152 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~-------~~~~~p~~~~n~---~~~r~~-GA- 152 (315)
..+..+..++++.||.... ........-..+...|++++++-....+ ....+....++. .+++.+ |.
T Consensus 46 ~~i~~~~~~~vdgiii~~~-~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~ 124 (272)
T cd06313 46 AAIENMASQGWDFIAVDPL-GIGTLTEAVQKAIARGIPVIDMGTLIAPLQINVHSFLAPDNYFMGASVAQALCNAMGGKG 124 (272)
T ss_pred HHHHHHHHcCCCEEEEcCC-ChHHhHHHHHHHHHCCCcEEEeCCCCCCCCCceEEEECCCcHHHHHHHHHHHHHHcCCCc
Confidence 4466677788998887532 1111122224456679999888542211 011111001121 112222 42
Q ss_pred EEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchh
Q 021235 153 HIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGG 232 (315)
Q Consensus 153 eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGG 232 (315)
+|.++.... ......++.+-..+.+++.+ ..-.+.....+.....++ ....++.++- .++|.|||.. ..
T Consensus 125 ~i~~l~g~~-~~~~~~~R~~gf~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~------~~~~ai~~~n--d~ 193 (272)
T cd06313 125 KIAMLQGAL-GHTGAQGRAQGFNDVIKKYP-DIEVVDEQPANWDVSKAA-RIWETWLTKY------PQLDGAFCHN--DS 193 (272)
T ss_pred eEEEEECCC-CCcchhHHHHHHHHHHHhCC-CCEEEeccCCCCCHHHHH-HHHHHHHHhC------CCCCEEEECC--Cc
Confidence 666664321 11111123343444454432 121221111111111222 2333443331 3588888754 45
Q ss_pred hHHHHHHHHhcCCC-CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchHHHHHHHHHhcCCCC
Q 021235 233 TIAGLSLGSWLGTL-KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQP 308 (315)
Q Consensus 233 t~aGl~~~~k~~~~-~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~~~~~~ 308 (315)
++.|+..++++.+. ++.|+|++-..... ..+.++.- .-.|..+-..+......++.++...|+.+
T Consensus 194 ~a~g~~~al~~~g~~di~vvgfd~~~~~~------~~~~~g~~-----~ttv~~~~~~~g~~a~~~~~~~~~~~~~~ 259 (272)
T cd06313 194 MALAAYQIMKAAGRTKIVIGGVDGDPPAI------QAVSDGRM-----VATVRNPACRIHGGAIAAGVRIVRGGKKS 259 (272)
T ss_pred HHHHHHHHHHHcCCCceEEEeecCCHHHH------HHHHcCce-----EEEEecCHHHHHHHHHHHHHHHhcCCCCc
Confidence 77889999988764 77788777653211 11111110 01133333345555666777776665543
No 344
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.23 E-value=3.8e+02 Score=23.18 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=34.7
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
++..|+ +|..|+++|..-.+.|.+.+++.....+.. ..-...++.++.++..+.-
T Consensus 8 vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 8 AIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAA------DELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHH------HHHHHHHHhcCCeEEEEEC
Confidence 333454 478999999999999999877665432110 1123344557877776653
No 345
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.19 E-value=4.4e+02 Score=23.90 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc--c----cCCCCCccch---HHHHHhCC--C
Q 021235 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV--L----VDQDPGLIGN---LLVERLVG--A 152 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~--~----~~~~p~~~~n---~~~~r~~G--A 152 (315)
..++..+..++.+.||..+.. ..........++..|++++++-....+ . ...+....+. ..+.+..| .
T Consensus 46 ~~~i~~~~~~~~DgiIi~~~~-~~~~~~~~~~~~~~~iPvV~v~~~~~~~~~~~~~v~~D~~~~g~~a~~~l~~~~~~~~ 124 (298)
T cd06302 46 VQIIEDLIAQGVDAIAVVPND-PDALEPVLKKAREAGIKVVTHDSDVQPDNRDYDIEQADNKAIGETLMDSLAEQMGGKG 124 (298)
T ss_pred HHHHHHHHhcCCCEEEEecCC-HHHHHHHHHHHHHCCCeEEEEcCCCCCCcceeEEeccCHHHHHHHHHHHHHHHcCCCC
Confidence 344666677889998875422 121233444567889998887532111 0 0001000111 11233333 4
Q ss_pred EEEEEcCCcccccChHHHHHHHHHHHHHhC-CCcEE--eCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Q 021235 153 HIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYV--IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACG 229 (315)
Q Consensus 153 eV~~v~~~~~~~~~~~~~~~~~~~~l~~~~-~~~y~--ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vG 229 (315)
++.++....... ....+.+...+.+++.+ +..-+ +..+..+. ..++ ....++.++- .++|+||+.
T Consensus 125 ~I~~l~g~~~~~-~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~------~~~~ai~~~-- 192 (298)
T cd06302 125 EYAIFVGSLTAT-NQNAWIDAAKAYQKEKYYPMLELVDRQYGDDDA--DKSY-QTAQELLKAY------PDLKGIIGP-- 192 (298)
T ss_pred EEEEEeCCCCCc-chHHHHHHHHHHHhhcCCCCeEEeCcccCCCCH--HHHH-HHHHHHHHhC------CCceEEEEC--
Confidence 776664321111 11123333444555543 11122 11222222 2333 2333443321 357888875
Q ss_pred chhhHHHHHHHHhcCCC--CCeEEEEecc
Q 021235 230 SGGTIAGLSLGSWLGTL--KAKVHAFSVC 256 (315)
Q Consensus 230 tGGt~aGl~~~~k~~~~--~~rVigV~~~ 256 (315)
+..++.|+..++++.+. ++.|+|++-.
T Consensus 193 ~D~~A~g~~~al~~~g~~~dv~vvG~D~~ 221 (298)
T cd06302 193 TSVGIPGAARAVEEAGLKGKVAVTGLGLP 221 (298)
T ss_pred CCcchhHHHHHHHhcCCCCCEEEEEeCCC
Confidence 45678899999998764 6778888653
No 346
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.06 E-value=2.6e+02 Score=27.05 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
...|+.+++.+ .++| +|+++|+|..+
T Consensus 74 ~v~~~~~~~~~----~~~D-~IiaiGGGSvi 99 (379)
T TIGR02638 74 VVKAGVAAFKA----SGAD-YLIAIGGGSPI 99 (379)
T ss_pred HHHHHHHHHHh----cCCC-EEEEeCChHHH
Confidence 33455555542 2454 56788887655
No 347
>PRK15452 putative protease; Provisional
Probab=28.96 E-value=6e+02 Score=25.45 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=51.0
Q ss_pred hHHHHHhCCCEEEEEcCCccccc-----ChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCC
Q 021235 143 NLLVERLVGAHIELISKEEYSKI-----GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG 217 (315)
Q Consensus 143 n~~~~r~~GAeV~~v~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~ 217 (315)
++..+-.+||+-+.++...|... -..+-++++.+...+.+...|+.-+. ...........+..+++.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~----i~~e~el~~~~~~l~~l~~--- 87 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI----APHNAKLKTFIRDLEPVIA--- 87 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC----cCCHHHHHHHHHHHHHHHh---
Confidence 46666677999888865433210 00122344444444445455543111 1111222233344555543
Q ss_pred CCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEE
Q 021235 218 GVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHA 252 (315)
Q Consensus 218 ~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVig 252 (315)
..+|.|++.- .|+...+++..|+.+||+
T Consensus 88 -~gvDgvIV~d------~G~l~~~ke~~p~l~ih~ 115 (443)
T PRK15452 88 -MKPDALIMSD------PGLIMMVREHFPEMPIHL 115 (443)
T ss_pred -CCCCEEEEcC------HHHHHHHHHhCCCCeEEE
Confidence 3589998864 456677777778888875
No 348
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=28.94 E-value=68 Score=32.46 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
.+.|| .|| |-.|.++|+.+++.|+++.++=.
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 7 YDLLV-IGG--GINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEec
Confidence 35444 566 78899999999999999877744
No 349
>PRK09134 short chain dehydrogenase; Provisional
Probab=28.91 E-value=4e+02 Score=23.43 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=23.7
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
.+|| |+ +|.-|..+|....+.|.+++++...
T Consensus 12 vlIt-Ga-s~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 12 ALVT-GA-ARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred EEEe-CC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3454 54 4789999999999999988776543
No 350
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=28.83 E-value=1.9e+02 Score=26.76 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
+.|+..|+ .+..|++++..|+.+|++.+++.+... +...++.+|++-++
T Consensus 167 ~~vlV~g~-~~~vg~~~~~~a~~~g~~v~~~~~~~~-----------~~~~~~~~g~~~v~ 215 (341)
T cd08297 167 DWVVISGA-GGGLGHLGVQYAKAMGLRVIAIDVGDE-----------KLELAKELGADAFV 215 (341)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHH-----------HHHHHHHcCCcEEE
Confidence 45655554 467999999999999998666544321 35566778976544
No 351
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=28.75 E-value=4.2e+02 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=22.5
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+++..|+ +|.-|.++|....+.|.+++++-+
T Consensus 12 ~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 12 VAVITGG-GGVLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 3433454 478999999999999998776644
No 352
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=28.73 E-value=1.4e+02 Score=28.31 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=33.7
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| + |-.|.+++..|+.+|.+-++++.... .+...++.+|++-++
T Consensus 186 ~~vlV~G-~-g~vG~~~~~~a~~~G~~~Vi~~~~~~----------~~~~~~~~~ga~~~i 234 (365)
T cd08277 186 STVAVFG-L-GAVGLSAIMGAKIAGASRIIGVDINE----------DKFEKAKEFGATDFI 234 (365)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCCcEe
Confidence 4555555 3 78999999999999995444443321 257778889996444
No 353
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=28.68 E-value=2.7e+02 Score=24.10 Aligned_cols=92 Identities=11% Similarity=0.109 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhC-CCcEEe
Q 021235 110 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYVI 188 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~-~~~y~i 188 (315)
-++|-+...-|++.++|-+..-- | |--+....++-+|++...+ + ..+.++++.+.++.... +..++.
T Consensus 38 e~l~~Y~s~~g~~iivVFDA~~v-----~---g~~~~~~~~~vsvvyT~~~---E-TADs~IEr~~~el~~~~t~~V~Va 105 (173)
T COG3688 38 EALAEYQSFTGYKIIVVFDAHYV-----P---GVGREYKNHRVSVVYTKEG---E-TADSFIERYVAELRNAATHQVIVA 105 (173)
T ss_pred HHHHHhhcccCceEEEEEEcccc-----c---cccccccccceEEEEecCC---c-cHHHHHHHHHHHHhccccceEEEE
Confidence 47788888999999999876431 1 1122344567778876543 2 13467888888887432 233444
Q ss_pred CCCCCchhhHHHHHH---HHHHHHHHHh
Q 021235 189 PVGGSNSIGTWGYIE---AIKEIEQQLQ 213 (315)
Q Consensus 189 p~g~~n~~~~~G~~t---~a~EI~~Q~~ 213 (315)
-........+.|+.. -+.|++..+.
T Consensus 106 TSD~~EQ~~Ifg~GA~r~Sarel~~ev~ 133 (173)
T COG3688 106 TSDRAEQWTIFGQGALRMSARELYQEVE 133 (173)
T ss_pred eCchhhhhhhhccchHHHhHHHHHHHHH
Confidence 333333455566533 4788877664
No 354
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.62 E-value=2e+02 Score=26.58 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=34.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+.. | .|..|++++..|+.+|++.++.+.... .+..+++.+|++-++
T Consensus 170 ~~vlI~-g-~g~vg~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~ga~~v~ 218 (345)
T cd08287 170 STVVVV-G-DGAVGLCAVLAAKRLGAERIIAMSRHE----------DRQALAREFGATDIV 218 (345)
T ss_pred CEEEEE-C-CCHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHcCCceEe
Confidence 455544 4 489999999999999998666554332 256777889985443
No 355
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.61 E-value=4.6e+02 Score=23.94 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=42.9
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchH
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTF 294 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~ 294 (315)
..||+|||. +-..+.|+..++++.+- ++.|+|++-. .+ ..+. ...+. -|..+-.++...-
T Consensus 237 ~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~disv~gfd~~---~~-----~~~~---~p~lt---tv~~~~~~~g~~a 300 (328)
T PRK11303 237 PMPDALFTT--SYTLLQGVLDVLLERPGELPSDLAIATFGDN---EL-----LDFL---PCPVN---AVAQQHRLIAERA 300 (328)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEeCCh---HH-----Hhcc---CCCce---EEecCHHHHHHHH
Confidence 358999986 44667799999887653 5567776521 11 1111 11111 2344434556666
Q ss_pred HHHHHHHHhcCCCCCCC
Q 021235 295 KNILMNILMNGKQPTPP 311 (315)
Q Consensus 295 ~~~~~~~~~~~~~~~~~ 311 (315)
.++|.+.+-+++-|+|.
T Consensus 301 ~~~l~~~i~~~~~~~~~ 317 (328)
T PRK11303 301 LELALAALDEPRKPKPG 317 (328)
T ss_pred HHHHHHHhhCCCCCCCC
Confidence 77777776544444543
No 356
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=28.54 E-value=75 Score=27.00 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
+.|+..|+ ||.|.-+|......|-+++++++..
T Consensus 168 k~V~VVG~--G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGG--GNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE----SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcC--hHHHHHHHHHHHhhCCEEEEEecCC
Confidence 55666676 8999999999999999999998764
No 357
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=28.53 E-value=71 Score=30.64 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=23.8
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+..|| |-.|.++|.+-++.|+++++|=.
T Consensus 6 v~IvGg--G~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 6 IAVVGG--GMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEcC
Confidence 444566 78899999999999999998853
No 358
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=28.47 E-value=2e+02 Score=26.76 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=32.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
.+|+.. + .|..|++++..|+.+|++.+++.+.. .+...++.+|++-++
T Consensus 171 ~~vlV~-g-~g~vG~~~~~~a~~~G~~v~~~~~~~-----------~~~~~~~~~g~~~vi 218 (337)
T cd05283 171 KRVGVV-G-IGGLGHLAVKFAKALGAEVTAFSRSP-----------SKKEDALKLGADEFI 218 (337)
T ss_pred CEEEEE-C-CcHHHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHcCCcEEe
Confidence 344444 3 37899999999999999765554322 145566778986544
No 359
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=28.38 E-value=4.1e+02 Score=25.30 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=17.4
Q ss_pred eEEEeCCchhhH--HHHHHHHhcCCCCCeEEEEecc
Q 021235 223 DIVVACGSGGTI--AGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 223 ~ivv~vGtGGt~--aGl~~~~k~~~~~~rVigV~~~ 256 (315)
.+|+++|+|... +|.+..... ..++++.|.+.
T Consensus 87 d~IIaiGGGsv~D~ak~vA~~~~--rgip~i~VPTT 120 (345)
T cd08195 87 SLIIALGGGVVGDLAGFVAATYM--RGIDFIQIPTT 120 (345)
T ss_pred CeEEEECChHHHhHHHHHHHHHh--cCCCeEEcchh
Confidence 577888877543 333332222 34566666653
No 360
>PRK06247 pyruvate kinase; Provisional
Probab=28.11 E-value=6.5e+02 Score=25.56 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCeEEEEe---cCCCcccCCCCCc--cchHHHHHhCCCEEEEEcCC----cccccChHHHHHHHHHHHHH
Q 021235 110 RAAAVAAKYLNLDCYLIL---RTSKVLVDQDPGL--IGNLLVERLVGAHIELISKE----EYSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivv---p~~~~~~~~~p~~--~~n~~~~r~~GAeV~~v~~~----~~~~~~~~~~~~~~~~~l~~ 180 (315)
.-+...|+++|.++++-. .+-... +.|+. ..-+.-.-.-|++-+..+.+ .|-. ...+.+.+++++.++
T Consensus 258 k~ii~~~~~~gkpvI~ATQmLeSM~~n--p~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPv-eaV~~m~~I~~~aE~ 334 (476)
T PRK06247 258 KRIIRAARRAGKPVVVATQMLESMIEN--PVPTRAEVSDVATAVLDGADAVMLSAETASGKYPV-EAVRTMARIIRQVER 334 (476)
T ss_pred HHHHHHHHHhCCCEEEECchHHHhhcC--CCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHH-HHHHHHHHHHHHHhh
Confidence 456688999999988832 221111 01221 12244444569998888743 2321 122344444444332
Q ss_pred hCCC-cEEe-CCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 181 EGRR-PYVI-PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 181 ~~~~-~y~i-p~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
.... .++. ................+.++.+++ +.+.||+.+-||.|+--++++ .|+..|+++...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l-------~a~~Iv~~T~sG~ta~~isk~----RP~~pI~a~t~~ 401 (476)
T PRK06247 335 DPTYPPLIHAQRPQPEATKRDAISYAARDIAERL-------DLAALVAYTSSGDTALRAARE----RPPLPILALTPN 401 (476)
T ss_pred ccchhhhhhhcccccCCCHHHHHHHHHHHHHHhC-------CCCEEEEEcCCcHHHHHHHhh----CCCCCEEEECCC
Confidence 1100 0000 000000011123334566776665 378999999999998766643 478888888764
No 361
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=28.04 E-value=83 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.6
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
|+..|| |=.|.++|.+.++.|++++||=....
T Consensus 4 V~IvGa--G~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 4 VAIVGA--GPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEE----SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEECC--CHHHHHHHHHHHhcccccccchhccc
Confidence 344465 66799999999999999888865444
No 362
>PLN02827 Alcohol dehydrogenase-like
Probab=27.92 E-value=1.7e+02 Score=28.17 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=34.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ |--|++++..|+.+|.+.++.+.... .+..+++.+|++-++
T Consensus 195 ~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~----------~~~~~a~~lGa~~~i 243 (378)
T PLN02827 195 SSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINP----------EKAEKAKTFGVTDFI 243 (378)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCH----------HHHHHHHHcCCcEEE
Confidence 45555553 67899999999999987665554322 257788899997543
No 363
>PRK05434 phosphoglyceromutase; Provisional
Probab=27.83 E-value=3.7e+02 Score=27.47 Aligned_cols=50 Identities=22% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCC----CEEEecCCchh--HHHHHHHHHHHHcCC-e--EEEEecCCC
Q 021235 82 KLEFLMADAVAQGA----DCIITIGGIQS--NHCRAAAVAAKYLNL-D--CYLILRTSK 131 (315)
Q Consensus 82 ~l~~ll~~a~~~G~----~~vVt~g~s~G--Nhg~alA~aa~~lGl-~--~~ivvp~~~ 131 (315)
.+..++.++.+.+. -++++-||.+| +|..++.-.|++.|+ + .|+|++...
T Consensus 97 ~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD 155 (507)
T PRK05434 97 ALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRD 155 (507)
T ss_pred HHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCC
Confidence 34555777766553 24667777766 899999999999999 3 567877653
No 364
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.78 E-value=3.3e+02 Score=24.35 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccc
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSK 164 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~ 164 (315)
.-++.+.+.|.+-+++.+ -|. .+...|+++|+.++ |.... | + .+.....+|++++.+=....
T Consensus 78 ~~a~~a~~aGA~FivsP~---~~~--~vi~~a~~~~i~~i---PG~~T-----p--t-Ei~~a~~~Ga~~vKlFPa~~-- 139 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPG---LTP--PLLKAAQEGPIPLI---PGVST-----P--S-ELMLGMELGLRTFKFFPAEA-- 139 (212)
T ss_pred HHHHHHHHcCCCEEECCC---CCH--HHHHHHHHcCCCEe---CCCCC-----H--H-HHHHHHHCCCCEEEEccchh--
Confidence 346678889998888653 344 88899999888654 44321 1 1 26778889999877632110
Q ss_pred cChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhH
Q 021235 165 IGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 198 (315)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~ 198 (315)
.+...+++ .++.--+..-++|.||-++.+.
T Consensus 140 ~gg~~~lk----~l~~p~p~~~~~ptGGV~~~ni 169 (212)
T PRK05718 140 SGGVKMLK----ALAGPFPDVRFCPTGGISPANY 169 (212)
T ss_pred ccCHHHHH----HHhccCCCCeEEEeCCCCHHHH
Confidence 01123333 3332223345678887766443
No 365
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=27.77 E-value=2.2e+02 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhH
Q 021235 172 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 234 (315)
Q Consensus 172 ~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 234 (315)
+++.+.+.+.+-...++.....||.. ....|+.+++.+ .++| +|+++|+|..+
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIavGGGSvi 94 (375)
T cd08179 42 DKVEAYLKEAGIEVEVFEGVEPDPSV-----ETVLKGAEAMRE----FEPD-WIIALGGGSPI 94 (375)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCH-----HHHHHHHHHHHh----cCCC-EEEEeCCccHH
Confidence 44555666544333333332334432 233455555543 2454 67788887654
No 366
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.77 E-value=3.7e+02 Score=25.90 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhc--------
Q 021235 172 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-------- 243 (315)
Q Consensus 172 ~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~-------- 243 (315)
+++.+.+.+.+-...+...-..||.- ....++.+++.+ .++| +|+++|+|..+= +++++..
T Consensus 41 ~~v~~~L~~~gi~~~~~~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIaiGGGS~~D-~AKaia~~~~~~~~~ 109 (375)
T cd08194 41 DKLTDSLKKEGIESAIFDDVVSEPTD-----ESVEEGVKLAKE----GGCD-VIIALGGGSPID-TAKAIAVLATNGGSI 109 (375)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCcCH-----HHHHHHHHHHHh----cCCC-EEEEeCCchHHH-HHHHHHHHHhCCCCH
Confidence 44555666544332222222234431 233455555543 2455 577888876543 3333221
Q ss_pred ---------CCCCCeEEEEecc
Q 021235 244 ---------GTLKAKVHAFSVC 256 (315)
Q Consensus 244 ---------~~~~~rVigV~~~ 256 (315)
..+.++++.|...
T Consensus 110 ~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 110 RDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHhCcccccCCCCCEEEECCC
Confidence 2245678888765
No 367
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=27.67 E-value=1.8e+02 Score=25.33 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=31.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ ++ .|++++..|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 136 ~~vli~g~-~~-~G~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 183 (271)
T cd05188 136 DTVLVLGA-GG-VGLLAAQLAKAAGARVIVTDRSD-----------EKLELAKELGADHVI 183 (271)
T ss_pred CEEEEECC-CH-HHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHhCCceec
Confidence 34554554 45 99999999999997766664332 135566778875443
No 368
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.66 E-value=1.8e+02 Score=31.09 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=37.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCe-EEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLD-CYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~-~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++||..|| ||.|.-+|..+.++|.+ ++++.+..... -|.....+..++..|.++++
T Consensus 571 k~VvVIGg--G~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~---~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 571 KKVAVVGG--GNTAMDSARTAKRLGAERVTIVYRRSEEE---MPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CcEEEECC--cHHHHHHHHHHHHcCCCeEEEeeecCccc---CCCCHHHHHHHHHcCCEEEe
Confidence 45666777 89999999999999998 88887653211 11111223456777887655
No 369
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.63 E-value=4.2e+02 Score=23.19 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=34.7
Q ss_pred CCeEEEEeCCCCCCCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 60 NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 60 g~~v~vKrEdl~~~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|.++.+.....++ .+....+.....++++.||..... .+.....-..++..|++.+.+-.
T Consensus 29 g~~~~~~~~~~~~--------~~~~~~l~~~~~~~vdgii~~~~~-~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 29 GGDLRVYDAGGDD--------AKQADQIDQAIAQKVDAIIIQHGR-AEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred CCEEEEECCCCCH--------HHHHHHHHHHHHcCCCEEEEecCC-hhhhHHHHHHHHHcCCCEEEecC
Confidence 6777775432221 222334555667789998875322 23333444456788999887754
No 370
>PRK09492 treR trehalose repressor; Provisional
Probab=27.57 E-value=4.7e+02 Score=23.71 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=25.1
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCC-CCeEEEEec
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHAFSV 255 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~-~~rVigV~~ 255 (315)
+||+|||.. -..+.|+..++++.+. ++.|+|++-
T Consensus 232 ~~~ai~~~~--D~~A~g~~~al~~~g~~disvig~d~ 266 (315)
T PRK09492 232 ETTALVCAT--DTLALGASKYLQEQGRDDIQVAGVGN 266 (315)
T ss_pred CCCEEEEcC--cHHHHHHHHHHHHcCCCceEEEeeCc
Confidence 589888665 4677799999988764 567777654
No 371
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=27.47 E-value=2.3e+02 Score=26.40 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=33.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
+.|+..| + |-.|.+++..|+.+|.+.++++.... .+...++.+|++.+
T Consensus 177 ~~vlI~g-~-g~vg~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~g~~~~ 224 (350)
T cd08240 177 EPVVIIG-A-GGLGLMALALLKALGPANIIVVDIDE----------AKLEAAKAAGADVV 224 (350)
T ss_pred CEEEEEC-C-cHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHhCCcEE
Confidence 5566564 3 78999999999999997555554322 24666778898643
No 372
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=27.44 E-value=2.1e+02 Score=27.34 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=39.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch-HHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n-~~~~r~~GAeV~~v~~ 159 (315)
.+++-.| -..|-+.++-.+|+++|+.+++..|+.-- ++++.... ....+..|+.+.++.+
T Consensus 154 ~k~a~vG-DgNNv~nSl~~~~a~~G~dv~ia~Pk~~~---p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 154 LKLAYVG-DGNNVANSLLLAAAKLGMDVRIATPKGYE---PDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred cEEEEEc-CcchHHHHHHHHHHHhCCeEEEECCCcCC---cCHHHHHHHHHHHHhcCCeEEEecC
Confidence 3555554 34899999999999999999999998752 11111111 1123344888887754
No 373
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.28 E-value=2.3e+02 Score=27.32 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCcccCCCCCccch---HHHHHhCCCEEEEEcC
Q 021235 110 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISK 159 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n---~~~~r~~GAeV~~v~~ 159 (315)
.++-..|+..|.++.+++.++.|. ..|. ...+...|-.+.++.+
T Consensus 158 l~~l~~A~~~gk~f~V~v~EsRP~------~qG~rlta~eL~~~GI~vtlI~D 204 (329)
T PRK06371 158 LAPIRIAHRNGKNIFVFVDETRPR------LQGARLTAWELAQEGIDHAIIAD 204 (329)
T ss_pred HHHHHHHHHcCCeeEEEECCCCCc------chHHHHHHHHHHHCCCCEEEEcc
Confidence 344456777888888888877653 2332 2345667888877765
No 374
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=27.26 E-value=4.4e+02 Score=23.27 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=21.6
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+|| |+ ++.-|+++|....+.|.+++++-+
T Consensus 4 lIt-Ga-s~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 4 LVT-AS-SRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEE-cC-CcHHHHHHHHHHHHcCCEEEEEeC
Confidence 454 54 468999999999999998666543
No 375
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=27.24 E-value=3.3e+02 Score=24.11 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHHH-HHHHHhhhcCC-CCCCC
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY-TQGLLDGLNAG-VDSRD 281 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~~-i~~l~~g~~~~-~~~~d 281 (315)
...++++++.+ .+-.||.|++-++||-..+-+..-+-.. . .+..+.++.-....... -..+.+..-.+ ..-..
T Consensus 15 ~~~~lA~kI~~--s~~~PDvIiaiaRGG~~pariLsd~L~~-~--~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~Gkk 89 (192)
T COG2236 15 LCRALAEKIRA--SGFKPDVIVAIARGGLIPARILSDFLGV-K--PLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKK 89 (192)
T ss_pred HHHHHHHHHHH--cCCCCCEEEEEcCCceehHHHHHHHhCC-C--ceEEEEEEEehhhcccCCcceeecCccccccCCCe
Confidence 34445555432 2467998887777766665555444321 2 44444443211111000 11122222223 34466
Q ss_pred eEEecCCcccchHHHHHHHHHhc
Q 021235 282 IVNIQNVSVYMTFKNILMNILMN 304 (315)
Q Consensus 282 vv~v~e~~~~~~~~~~~~~~~~~ 304 (315)
|+.|+|--=.+.=|+...+-+.-
T Consensus 90 VLIVDDI~DTG~Tl~~a~~~l~~ 112 (192)
T COG2236 90 VLIVDDIVDTGETLELALEELKK 112 (192)
T ss_pred EEEEecccCchHhHHHHHHHHHh
Confidence 88888865555555555544443
No 376
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=27.23 E-value=77 Score=31.35 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=23.7
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
+|.|| .|+ |-.|.+.|+.+++.|.+++++=
T Consensus 5 ~DVvV-VG~--G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 5 VDVLV-IGG--GNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCeEEEEe
Confidence 45455 565 7889999999999999877764
No 377
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=27.16 E-value=1e+02 Score=29.68 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=25.2
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+|...|| |-.|+.+|.+|+++|++++++-+.
T Consensus 4 ~igilG~--Gql~~ml~~aa~~lG~~v~~~d~~ 34 (372)
T PRK06019 4 TIGIIGG--GQLGRMLALAAAPLGYKVIVLDPD 34 (372)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3444576 679999999999999999988765
No 378
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.13 E-value=4.5e+02 Score=26.80 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
.+.++..|-+++.++.+ ++.++++++.+ .-.+--+..++ |..++.+- .+.|.
T Consensus 433 a~~L~~~g~~vvvId~d-----------~~~~~~~~~~g--~~~i~GD~~~~-----------~~L~~a~i----~~a~~ 484 (558)
T PRK10669 433 GEKLLAAGIPLVVIETS-----------RTRVDELRERG--IRAVLGNAANE-----------EIMQLAHL----DCARW 484 (558)
T ss_pred HHHHHHCCCCEEEEECC-----------HHHHHHHHHCC--CeEEEcCCCCH-----------HHHHhcCc----cccCE
Q ss_pred EEEeCCchhhHHHHHHHHhcCCCCCeEEE
Q 021235 224 IVVACGSGGTIAGLSLGSWLGTLKAKVHA 252 (315)
Q Consensus 224 ivv~vGtGGt~aGl~~~~k~~~~~~rVig 252 (315)
++++++.--...-+....+..+++.+|++
T Consensus 485 viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 485 LLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEEcCChHHHHHHHHHHHHHCCCCeEEE
No 379
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.12 E-value=4.6e+02 Score=23.50 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc---------ccCCCCCccch---HHHHHhC-C
Q 021235 85 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV---------LVDQDPGLIGN---LLVERLV-G 151 (315)
Q Consensus 85 ~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~---------~~~~~p~~~~n---~~~~r~~-G 151 (315)
..+..+...+.+.||... +..+........++..|++++++-..... ....+....+. ..+.+.+ |
T Consensus 47 ~~l~~~~~~~~dgiii~~-~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g 125 (294)
T cd06316 47 ADIETTISQKPDIIISIP-VDPVSTAAAYKKVAEAGIKLVFMDNVPSGLEHGKDYAGIVTDDNYGNGQIAADALAKALPG 125 (294)
T ss_pred HHHHHHHHhCCCEEEEcC-CCchhhhHHHHHHHHcCCcEEEecCCCcccccCcceEEEEccCcHHHHHHHHHHHHHHhCC
Confidence 345556677889888653 22222233345567789998877532110 00011111111 1122221 3
Q ss_pred -CEEEEEcC-CcccccChHHHHHHHHHHHHHhCCCcEEe-CCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Q 021235 152 -AHIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVI-PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVAC 228 (315)
Q Consensus 152 -AeV~~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~i-p~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~v 228 (315)
.++-++.. ..+. ....+.+...+.+++.+....++ +....+. ..++ ....+++++- .++|+||+.
T Consensus 126 ~~~i~~l~~~~~~~--~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~------~~~~ai~~~- 193 (294)
T cd06316 126 KGKVGLIYHGADYF--VTNQRDQGFKETIKKNYPDITIVAEKGIDGP--SKAE-DIANAMLTQN------PDLKGIYAV- 193 (294)
T ss_pred CceEEEEeCCCCcc--cHHHHHHHHHHHHHHhCCCcEEEeecCCcch--hHHH-HHHHHHHHhC------CCeeEEEeC-
Confidence 35655532 2211 11223333444454433222222 2221211 2343 2445554432 358888876
Q ss_pred CchhhHHHHHHHHhcCCC-CCeEEEEecc
Q 021235 229 GSGGTIAGLSLGSWLGTL-KAKVHAFSVC 256 (315)
Q Consensus 229 GtGGt~aGl~~~~k~~~~-~~rVigV~~~ 256 (315)
+...+.|+..++++.+. ++.|+|++-.
T Consensus 194 -~d~~a~g~~~~l~~~g~~di~vvg~d~~ 221 (294)
T cd06316 194 -WDVPAEGVIAALRAAGRDDIKVTTVDLG 221 (294)
T ss_pred -CCchhHHHHHHHHHcCCCCceEEEeCCC
Confidence 34457899999998875 7888888753
No 380
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=27.04 E-value=5.1e+02 Score=23.99 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=22.8
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC-CCeEEE
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHA 252 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~-~~rVig 252 (315)
.++|.|++. +.|+-...+.+.++..+. ++++++
T Consensus 186 ~~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~ 219 (334)
T cd06356 186 AKPDFVMSI-LVGANHLSFYRQWAAAGLGNIPMAS 219 (334)
T ss_pred cCCCEEEEe-ccCCcHHHHHHHHHHcCCccCceee
Confidence 468988874 444456677888887776 666665
No 381
>PRK07121 hypothetical protein; Validated
Probab=27.03 E-value=78 Score=31.70 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.0
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
+|.|| .|+ |..|.+.|+.|++.|.+++++=
T Consensus 21 ~DVvV-VGa--G~AGl~AA~~aae~G~~VillE 50 (492)
T PRK07121 21 ADVVV-VGF--GAAGACAAIEAAAAGARVLVLE 50 (492)
T ss_pred cCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEe
Confidence 45444 565 8899999999999999888764
No 382
>PRK08017 oxidoreductase; Provisional
Probab=27.01 E-value=2.1e+02 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=32.4
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+++..|+ +|--|.++|....+.|.+.+++.+.. .+.+.++..|++.+.++
T Consensus 4 ~vlVtGa-sg~IG~~la~~l~~~g~~v~~~~r~~-----------~~~~~~~~~~~~~~~~D 53 (256)
T PRK08017 4 SVLITGC-SSGIGLEAALELKRRGYRVLAACRKP-----------DDVARMNSLGFTGILLD 53 (256)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCH-----------HHhHHHHhCCCeEEEee
Confidence 3444454 47899999999989999876664432 13444555677665544
No 383
>PRK07063 short chain dehydrogenase; Provisional
Probab=26.97 E-value=4.4e+02 Score=23.19 Aligned_cols=31 Identities=16% Similarity=-0.052 Sum_probs=22.0
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+++..|+ +|--|.++|..-...|.+++++-+
T Consensus 9 ~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 9 VALVTGA-AQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 3433454 467889999988899998776644
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=26.93 E-value=1.6e+02 Score=29.27 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 126 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~iv 126 (315)
++|+.+|- |+-|+.+|..++.+|.+++++
T Consensus 196 k~VvViG~--G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGY--GWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred CEEEEECC--CHHHHHHHHHHhhCcCEEEEE
Confidence 45666664 899999999999999985554
No 385
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.88 E-value=90 Score=30.69 Aligned_cols=26 Identities=27% Similarity=0.028 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+|-.|.++|..+...|.+++++...
T Consensus 209 SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 209 SSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 67889999999999999999988743
No 386
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.85 E-value=1.7e+02 Score=27.40 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=31.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 154 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV 154 (315)
.++...|. |+.|+++|..++.+|.+.+++-+.. .+....+.+|++.
T Consensus 153 ~kvlViG~--G~iG~~~a~~L~~~Ga~V~v~~r~~-----------~~~~~~~~~G~~~ 198 (296)
T PRK08306 153 SNVLVLGF--GRTGMTLARTLKALGANVTVGARKS-----------AHLARITEMGLSP 198 (296)
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCEEEEEECCH-----------HHHHHHHHcCCee
Confidence 34555564 8899999999999998666663331 1345566788764
No 387
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=26.84 E-value=81 Score=31.12 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=21.5
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
||..|| |=.|...|++++++|.++.++.
T Consensus 2 ViVVGg--G~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 2 VIVVGG--GHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEESS--SHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 344566 7789999999999999999994
No 388
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.82 E-value=1.6e+02 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=30.2
Q ss_pred HcCCCEEEecCCchhHHHH-HHHHHHHHcCCeEEEEecCCCc
Q 021235 92 AQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 92 ~~G~~~vVt~g~s~GNhg~-alA~aa~~lGl~~~ivvp~~~~ 132 (315)
++|+++|+.+| ...++|. ++|.-|..+|++++++.+....
T Consensus 130 ~~~i~~l~v~G-~~td~CV~~T~~~A~~~gy~v~v~~da~~~ 170 (205)
T COG1335 130 NLGIDTVVVCG-IATDICVLATARDAFDLGYQVTLVEDATAG 170 (205)
T ss_pred HCCCCEEEEee-eehhHHHHHHHHHHHHCCCeEEEehhhccc
Confidence 48999999876 4567776 4566666799999999876654
No 389
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=26.81 E-value=5e+02 Score=23.84 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCC----C--ccch---HHHHHhCCC--
Q 021235 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP----G--LIGN---LLVERLVGA-- 152 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p----~--~~~n---~~~~r~~GA-- 152 (315)
...+.+++.+|.+.|+.. ....+........++..|++++.+-........... + ..|. ..+.+.+|.
T Consensus 81 ~~~i~~~ia~~~daIiv~-~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g 159 (322)
T COG1879 81 IAQIEDLIAQGVDAIIIN-PVDPDALTPAVKKAKAAGIPVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGGKG 159 (322)
T ss_pred HHHHHHHHHcCCCEEEEc-CCChhhhHHHHHHHHHCCCcEEEEecCCCCCCceeEEEecCcHHHHHHHHHHHHHHhCCCC
Confidence 334667788999988764 455678888888899999999888654322100000 0 0111 223344553
Q ss_pred EEEEE-cCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCch
Q 021235 153 HIELI-SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 231 (315)
Q Consensus 153 eV~~v-~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 231 (315)
++..+ +...+. ...++..-..+.+.+..+...++.....+.....+ .++.+++-. ...+++.|+ +.++
T Consensus 160 ~v~~~~g~~~~~--~~~~R~~G~~~~l~~~~~~~~v~~~~~~~~~~~~a-----~~~~~~~L~--~~pdi~~i~--~~~d 228 (322)
T COG1879 160 KVVVLVGSPGNS--SAEERVKGFRDALKEHPPDIEVVDVQTGDWDRDKA-----LEVMEDLLA--ANPDIDGIY--AAND 228 (322)
T ss_pred eEEEEecCCCCc--hHHHHHhhHHHHHHhCCCcEEEeeccCCcccHHHH-----HHHHHHHHH--hCCCceEEE--ECCc
Confidence 34333 322221 11223333444555544322344444434443333 344444321 012344444 4445
Q ss_pred hhHHHHHHHHhcCCCC--CeEEEEec
Q 021235 232 GTIAGLSLGSWLGTLK--AKVHAFSV 255 (315)
Q Consensus 232 Gt~aGl~~~~k~~~~~--~rVigV~~ 255 (315)
+...|...+++..+.. +.|+|.+-
T Consensus 229 ~~a~ga~~A~~~~g~~~~v~v~g~D~ 254 (322)
T COG1879 229 GMALGAIQALKAAGRKGDVVVVGFDG 254 (322)
T ss_pred hhHHHHHHHHHHcCCCCceEEEEecC
Confidence 5666777888866543 44444444
No 390
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=26.77 E-value=77 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=17.1
Q ss_pred CCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 102 GGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 102 g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+ |-+|+++|+.+++.|++-++++..
T Consensus 4 Ga--G~aGl~~a~~l~~~g~~~v~v~e~ 29 (203)
T PF13738_consen 4 GA--GPAGLAAAAHLLERGIDPVVVLER 29 (203)
T ss_dssp ----SHHHHHHHHHHHHTT---EEEEES
T ss_pred Cc--CHHHHHHHHHHHhCCCCcEEEEeC
Confidence 55 788999999999999984444443
No 391
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=26.67 E-value=1.5e+02 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=32.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHc-CCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~l-Gl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ .|..|++++..|+.+ |++.+.+.+.. .+...++.+|++-++
T Consensus 150 ~~vlV~ga-~g~vg~~~~~~ak~~~G~~vi~~~~~~-----------~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 150 RALLIIGG-AGGVGSILIQLARQLTGLTVIATASRP-----------ESQEWVLELGAHHVI 199 (336)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHhCCCEEEEEcCcH-----------HHHHHHHHcCCCEEE
Confidence 45554553 467888889999988 98876664432 135566778986544
No 392
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=26.65 E-value=3.7e+02 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=25.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 101 IGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 101 ~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
.| .+|+.|..++....+.|.+.+++++...
T Consensus 4 ~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FG-ATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ET-TTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred EC-CCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 45 4589999999999999999999997643
No 393
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=26.64 E-value=77 Score=32.03 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=23.8
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
+|.|| .|+ |..|.+.|+.|++.|.+++++=
T Consensus 62 ~DVvV-VG~--G~AGl~AAi~Aa~~Ga~VivlE 91 (506)
T PRK06481 62 YDIVI-VGA--GGAGMSAAIEAKDAGMNPVILE 91 (506)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCCEEEEE
Confidence 45445 566 8999999999999999877764
No 394
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=26.61 E-value=84 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=22.2
Q ss_pred EecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 99 ITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 99 Vt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+..|| |-.|.++|+..++.|++++++=.
T Consensus 4 vIIGa--Gi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 4 IVVGA--GIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EEECC--CHHHHHHHHHHHHCCCeEEEEec
Confidence 33466 88999999999999999777643
No 395
>PRK06128 oxidoreductase; Provisional
Probab=26.57 E-value=5e+02 Score=23.71 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 94 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 94 G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
|...+|| |+ +|--|.++|..-.+.|.++++........ ........++..|.++..+.
T Consensus 55 ~k~vlIT-Ga-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 55 GRKALIT-GA-DSGIGRATAIAFAREGADIALNYLPEEEQ-----DAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CCEEEEe-cC-CCcHHHHHHHHHHHcCCEEEEEeCCcchH-----HHHHHHHHHHHcCCeEEEEe
Confidence 3344554 54 47889999999999999887754322110 00112344556677766554
No 396
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=26.57 E-value=1.8e+02 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=32.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
++|+..| + |-.|++++..|+.+|.+.+++ .... .+...++.+|++.+
T Consensus 157 ~~vlV~g-~-g~vg~~~~q~a~~~G~~vi~~-~~~~----------~~~~~~~~~g~~~~ 203 (319)
T cd08242 157 DKVAVLG-D-GKLGLLIAQVLALTGPDVVLV-GRHS----------EKLALARRLGVETV 203 (319)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCeEEEE-cCCH----------HHHHHHHHcCCcEE
Confidence 4565554 3 789999999999999994444 2221 24667777898653
No 397
>PRK06172 short chain dehydrogenase; Provisional
Probab=26.48 E-value=4.4e+02 Score=23.03 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
...+...|++|+.+.+.. +..++..+++.+.+.+..++..+-.+...... +..++.+++ +++|.
T Consensus 24 a~~l~~~G~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~---~~~~~~~~~------g~id~ 87 (253)
T PRK06172 24 ALAFAREGAKVVVADRDA-------AGGEETVALIREAGGEALFVACDVTRDAEVKA---LVEQTIAAY------GRLDY 87 (253)
T ss_pred HHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH---HHHHHHHHh------CCCCE
Q ss_pred EEEeCC
Q 021235 224 IVVACG 229 (315)
Q Consensus 224 ivv~vG 229 (315)
||..+|
T Consensus 88 li~~ag 93 (253)
T PRK06172 88 AFNNAG 93 (253)
T ss_pred EEECCC
No 398
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=26.37 E-value=4.8e+02 Score=23.45 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCC-----CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhC---CCE
Q 021235 82 KLEFLMADAVAQGA-----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLV---GAH 153 (315)
Q Consensus 82 ~l~~ll~~a~~~G~-----~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~---GAe 153 (315)
.+.++.......+. ..+.+. |.++|-+.+++|+++.++-+.... .+-+..+..+ |..
T Consensus 61 av~~~~~~l~~~~~~~~~~~~i~aV-------G~~Ta~~l~~~G~~~~~~p~~~~~--------~~l~~~l~~~~~~~~~ 125 (248)
T COG1587 61 AVRFFFEALKEQGLDALKNKKIAAV-------GEKTAEALRKLGIKVDFIPEDGDS--------EGLLEELPELLKGGKR 125 (248)
T ss_pred HHHHHHHHHHhhcccccccCeEEEE-------cHHHHHHHHHhCCCCCcCCCccch--------HHHHHHhhhhccCCCe
Confidence 33444454445552 355555 468899999999999888653332 2345555555 567
Q ss_pred EEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhh
Q 021235 154 IELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 233 (315)
Q Consensus 154 V~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 233 (315)
|.......- . ..+.+.+...|-....++..-.-+.-.. . .++.+.+.. ..+|.|++..+. +
T Consensus 126 vl~~~~~~~----r----~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~----~~~~~~~~~----~~~d~v~ftS~~--~ 186 (248)
T COG1587 126 VLILRGNGG----R----EVLEEKLEERGAEVREVEVYRTEPPPLD-E----ATLIELLKL----GEVDAVVFTSSS--A 186 (248)
T ss_pred EEEEcCCCc----h----HHHHHHHHhCCCEEEEEeeeeecCCCcc-H----HHHHHHHHh----CCCCEEEEeCHH--H
Confidence 765543221 1 2234456665544444443322221111 1 122222221 468999988654 4
Q ss_pred HHHHHHHHhcCCC----CCeEEEEeccCCchhhHHHHHHHHhhhcC
Q 021235 234 IAGLSLGSWLGTL----KAKVHAFSVCDDPDYFYDYTQGLLDGLNA 275 (315)
Q Consensus 234 ~aGl~~~~k~~~~----~~rVigV~~~g~~~~~~~~i~~l~~g~~~ 275 (315)
+..+...+...+. +.+|+.|- +...+.+..+|.
T Consensus 187 v~~~~~~~~~~~~~~~~~~~v~~IG---------~~Ta~~l~~~G~ 223 (248)
T COG1587 187 VRALLALAPESGIEFLERKRVASIG---------PRTAETLKELGI 223 (248)
T ss_pred HHHHHHHccccchhHhhCceEEEec---------HHHHHHHHHcCC
Confidence 6666666665443 24554443 233445556664
No 399
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=26.34 E-value=75 Score=30.33 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=23.8
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+..|+ |-.|.++|...++.|++++++=..
T Consensus 10 ViIVGa--G~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 10 IAVIGG--GPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred EEEECc--CHHHHHHHHHHhcCCCeEEEEeCC
Confidence 444566 788999999999999998887443
No 400
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=26.25 E-value=4.5e+02 Score=23.45 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=8.6
Q ss_pred CCCeEEEEeccC
Q 021235 246 LKAKVHAFSVCD 257 (315)
Q Consensus 246 ~~~rVigV~~~g 257 (315)
.+++|..|.+..
T Consensus 195 ~girvn~v~Pg~ 206 (278)
T PRK08277 195 VGIRVNAIAPGF 206 (278)
T ss_pred cCeEEEEEEecc
Confidence 468888887753
No 401
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=26.14 E-value=2.5e+02 Score=27.48 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=51.4
Q ss_pred ccCCCCCChhhhcCCCCcCcc-----cCCCCCCCccccCC-CC--CCC-------------CCeEEEEeCCCC-CCCCch
Q 021235 20 KTSYAPPSWASHLAPIPSHVF-----SLGHFPTPIHKWNL-PN--LPH-------------NTEVWLKRDDLS-GMQLSG 77 (315)
Q Consensus 20 ~~~~~~p~~~~~l~~~p~~r~-----~~~~~~TPL~~~~~-~~--L~~-------------g~~v~vKrEdl~-~~~~gg 77 (315)
.|-+.||++...+.. |+.-+ .+.+..-||.---. |. |+. |+. |+|.|-.+ ...+.=
T Consensus 96 ~D~~~P~~~~~~F~G-P~fGi~G~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D-~IKDDE~l~~q~~~p 173 (366)
T cd08148 96 EDLEFPEEYKKLFPG-PKFGIDGIRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLD-LIKDDETLTDQPFCP 173 (366)
T ss_pred EEeeCCHHHHhcCCC-CCCCchhHHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCC-ccccccccCCCCCCc
Confidence 556777787776655 32211 14445566653101 11 211 334 68877543 222455
Q ss_pred hHHHHHHHH--HHHHH-HcCCCEEE--ecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 78 NKVRKLEFL--MADAV-AQGADCII--TIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 78 ~K~R~l~~l--l~~a~-~~G~~~vV--t~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
++.|-...+ +.+|. +.|.+++- -..+. ..-.+.=|-.++..|.++..+-+
T Consensus 174 ~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~ 228 (366)
T cd08148 174 LRDRITEVAAALDRVQEETGEKKLYAVNVTAG-TFEIIERAERALELGANMLMVDV 228 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcceEEEEccCC-HHHHHHHHHHHHHhCCCEEEEec
Confidence 777753322 33333 34544332 11122 24556666677777776665543
No 402
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.14 E-value=2.7e+02 Score=26.88 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCcccCCCCCccch---HHHHHhCCCEEEEEcC
Q 021235 111 AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISK 159 (315)
Q Consensus 111 alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n---~~~~r~~GAeV~~v~~ 159 (315)
++-..|++.|.++.+|+.++.|. ..|. ...+...|-.+.++.+
T Consensus 170 ~~l~~A~~~gk~~~V~v~EtRP~------~qG~rlta~eL~~~GI~vtlI~D 215 (339)
T PRK06036 170 GVIRSAVEQGKEIKVIACETRPL------NQGSRLTTWELMQDNIPVTLITD 215 (339)
T ss_pred HHHHHHHHcCCceEEEEcCCCch------hhHHHHHHHHHHHcCCCEEEEeh
Confidence 44456777888888888877653 2332 1345567888877765
No 403
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=26.04 E-value=4.5e+02 Score=23.07 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=31.7
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.-+|+ |+ +|--|.++|......|.+++++.+.... .......++..+.++..+..
T Consensus 14 ~ilIt-Ga-~g~IG~~la~~l~~~G~~V~~~~r~~~~-------~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 14 TALVT-GG-SRGLGLQIAEALGEAGARVVLSARKAEE-------LEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHcCCEEEEEeCCHHH-------HHHHHHHHHhcCCeEEEEEc
Confidence 33444 54 4788999998888899987666443211 01112234456667666543
No 404
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=25.97 E-value=5.5e+02 Score=24.00 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=3.5
Q ss_pred CeEEEEec
Q 021235 248 AKVHAFSV 255 (315)
Q Consensus 248 ~rVigV~~ 255 (315)
++++.|..
T Consensus 105 ~p~i~iPT 112 (332)
T cd07766 105 LPIIIVPT 112 (332)
T ss_pred CCEEEEeC
Confidence 44444443
No 405
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=25.97 E-value=7.1e+02 Score=27.25 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=39.7
Q ss_pred EEEecCCchhHH--HHHHHHHHHHcCCeEEEE-ecCCCcc-c--CCCCCccchHHHHHhCCCEEEEEcCC
Q 021235 97 CIITIGGIQSNH--CRAAAVAAKYLNLDCYLI-LRTSKVL-V--DQDPGLIGNLLVERLVGAHIELISKE 160 (315)
Q Consensus 97 ~vVt~g~s~GNh--g~alA~aa~~lGl~~~iv-vp~~~~~-~--~~~p~~~~n~~~~r~~GAeV~~v~~~ 160 (315)
-+||.+++.+|- -+..|..|.+++-+.+++ +...... . ++......++.+.+.+||+++.+..+
T Consensus 251 ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~ 320 (890)
T COG2205 251 ILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG 320 (890)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 356766664443 356677788899988876 3222111 0 00111346788999999999988764
No 406
>PRK08589 short chain dehydrogenase; Validated
Probab=25.93 E-value=4.7e+02 Score=23.40 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=32.2
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
.+|| |++ +--|+++|......|.+++++-+. ... ......++..|.++..+.
T Consensus 9 vlIt-Gas-~gIG~aia~~l~~~G~~vi~~~r~-~~~-------~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 9 AVIT-GAS-TGIGQASAIALAQEGAYVLAVDIA-EAV-------SETVDKIKSNGGKAKAYH 60 (272)
T ss_pred EEEE-CCC-chHHHHHHHHHHHCCCEEEEEeCc-HHH-------HHHHHHHHhcCCeEEEEE
Confidence 3454 543 678999999889999988887554 211 112344455676665554
No 407
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=25.87 E-value=3.6e+02 Score=23.74 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=32.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
..+|| |+ +|.-|.++|....+.|.+++++-.... ......++..|.++..+.
T Consensus 12 ~~lIt-G~-~~gIG~a~a~~l~~~G~~vv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 12 VAVVT-GC-DTGLGQGMALGLAEAGCDIVGINIVEP---------TETIEQVTALGRRFLSLT 63 (253)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEecCcch---------HHHHHHHHhcCCeEEEEE
Confidence 33454 54 479999999999999998776522211 112344455676666554
No 408
>PRK08303 short chain dehydrogenase; Provisional
Probab=25.85 E-value=5.4e+02 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=23.0
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+++..|++ +--|.++|....+.|.+++++-+.
T Consensus 10 ~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 10 VALVAGAT-RGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCEEEEEecc
Confidence 33334554 568999999999999987776554
No 409
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.83 E-value=1.5e+02 Score=25.47 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCcEE--eCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCC
Q 021235 170 LTNILKEKLLKEGRRPYV--IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK 247 (315)
Q Consensus 170 ~~~~~~~~l~~~~~~~y~--ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~ 247 (315)
.++.+++.|.+-+ -+|- +-.-+.+|.-+ .|..++..+ ..++.|+...|+...+-|+..+.- .
T Consensus 17 ~mk~Aa~~L~~fg-i~ye~~VvSAHRTPe~m-------~~ya~~a~~----~g~~viIAgAGgAAHLPGmvAa~T----~ 80 (162)
T COG0041 17 TMKKAAEILEEFG-VPYEVRVVSAHRTPEKM-------FEYAEEAEE----RGVKVIIAGAGGAAHLPGMVAAKT----P 80 (162)
T ss_pred HHHHHHHHHHHcC-CCeEEEEEeccCCHHHH-------HHHHHHHHH----CCCeEEEecCcchhhcchhhhhcC----C
Confidence 3455566665533 2231 11223345433 344444432 358899999999999999988764 5
Q ss_pred CeEEEEeccCCchhhHHHHHHHH
Q 021235 248 AKVHAFSVCDDPDYFYDYTQGLL 270 (315)
Q Consensus 248 ~rVigV~~~g~~~~~~~~i~~l~ 270 (315)
..|+||.+.............++
T Consensus 81 lPViGVPv~s~~L~GlDSL~SiV 103 (162)
T COG0041 81 LPVIGVPVQSKALSGLDSLLSIV 103 (162)
T ss_pred CCeEeccCccccccchHHHHHHh
Confidence 78999999865544434444443
No 410
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=25.79 E-value=1.6e+02 Score=27.13 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=32.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcC-CeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLN-LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lG-l~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| .++ .|++++..|+.+| .+.+.+.+.. .+...++.+|++-++
T Consensus 169 ~~vlI~g-~~~-vg~~~~~~a~~~g~~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 217 (340)
T cd05284 169 STVVVIG-VGG-LGHIAVQILRALTPATVIAVDRSE-----------EALKLAERLGADHVL 217 (340)
T ss_pred CEEEEEc-CcH-HHHHHHHHHHHhCCCcEEEEeCCH-----------HHHHHHHHhCCcEEE
Confidence 4565565 434 9999999999999 7765553321 246677889985443
No 411
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=25.77 E-value=82 Score=31.87 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.4
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+..|| |-.|.+.|..++++|++++++.+
T Consensus 214 vvIIGg--GpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 214 VLVVGG--GPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCcEEEEec
Confidence 444566 78899999999999999999965
No 412
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=25.76 E-value=2.7e+02 Score=21.84 Aligned_cols=44 Identities=27% Similarity=0.205 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCC
Q 021235 204 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 258 (315)
Q Consensus 204 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~ 258 (315)
.+.++.++++ ...||+.+-||.|+--+++ ..|+..|++|.....
T Consensus 7 aa~~~A~~~~-------ak~Ivv~T~sG~ta~~isk----~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDLN-------AKAIVVFTESGRTARLISK----YRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHT-------ESEEEEE-SSSHHHHHHHH----T-TSSEEEEEESSHH
T ss_pred HHHHHHHhcC-------CCEEEEECCCchHHHHHHh----hCCCCeEEEEcCcHH
Confidence 4567777764 6899999999998866654 358899999987643
No 413
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=25.70 E-value=2.5e+02 Score=25.71 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=32.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| . |..|++++..|+.+|++.+++.+.. .+...++.+|++-++
T Consensus 164 ~~vlI~g-~-g~iG~~~~~~a~~~G~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 211 (330)
T cd08245 164 ERVAVLG-I-GGLGHLAVQYARAMGFETVAITRSP-----------DKRELARKLGADEVV 211 (330)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHCCCEEEEEeCCH-----------HHHHHHHHhCCcEEe
Confidence 3454444 3 4499999999999999866654432 245666778876554
No 414
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=25.69 E-value=2e+02 Score=31.79 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=27.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
++|+..|| ||.|.-+|..+.++|-+++++.+..
T Consensus 448 k~VvVIGG--G~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGG--GNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45666777 8999999999999999988887653
No 415
>PRK07806 short chain dehydrogenase; Provisional
Probab=25.62 E-value=4.5e+02 Score=22.84 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=23.1
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
.+| .|+ +|.-|.++|......|.+++++.+.
T Consensus 9 vlI-tGa-sggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 9 ALV-TGS-SRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred EEE-ECC-CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 344 454 4689999999988999998777653
No 416
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=25.60 E-value=2.2e+02 Score=26.25 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=36.7
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 157 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v 157 (315)
++|+..|+ .|.-|++++..|+.+|.+.++....... ...+...++.+|++-++-
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~~~-------~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 148 DWVIQNGA-NSAVGQAVIQLAKLLGIKTINVVRDRPD-------LEELKERLKALGADHVLT 201 (341)
T ss_pred CEEEEccc-hhHHHHHHHHHHHHcCCeEEEEEcCCCc-------chhHHHHHHhcCCCEEEe
Confidence 56666654 5789999999999999997777653210 012455667799875543
No 417
>PRK07774 short chain dehydrogenase; Provisional
Probab=25.58 E-value=4.5e+02 Score=22.83 Aligned_cols=31 Identities=16% Similarity=-0.017 Sum_probs=22.8
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
++..|+ +|--|.++|......|.+++++-+.
T Consensus 9 vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 9 AIVTGA-AGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred EEEECC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 443454 4788999999999999987776543
No 418
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.54 E-value=4.6e+02 Score=23.15 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=39.5
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
...+...|++|+.+.+.. . ....+.+.+.+.+..++..+-.++.. ...+..++.++. +++|.
T Consensus 25 a~~l~~~G~~vv~~~~~~-----~----~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~~~~~------g~iD~ 86 (251)
T PRK12481 25 AIGLAKAGADIVGVGVAE-----A----PETQAQVEALGRKFHFITADLIQQKD---IDSIVSQAVEVM------GHIDI 86 (251)
T ss_pred HHHHHHCCCEEEEecCch-----H----HHHHHHHHHcCCeEEEEEeCCCCHHH---HHHHHHHHHHHc------CCCCE
Confidence 334456799998876521 0 11223333334445556555444443 334556666655 36999
Q ss_pred EEEeCCch
Q 021235 224 IVVACGSG 231 (315)
Q Consensus 224 ivv~vGtG 231 (315)
+|..+|.+
T Consensus 87 lv~~ag~~ 94 (251)
T PRK12481 87 LINNAGII 94 (251)
T ss_pred EEECCCcC
Confidence 99998864
No 419
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=25.48 E-value=1.7e+02 Score=24.94 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=22.6
Q ss_pred CeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccC
Q 021235 222 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 257 (315)
Q Consensus 222 D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g 257 (315)
..+-+++|+|+...-++.. ..+..+|++||...
T Consensus 35 ~VLDiG~GtG~~~~~l~~~---~~~~~~v~~vDis~ 67 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQ---VGGKGRVIAVDLQP 67 (188)
T ss_pred EEEEecCCCCHHHHHHHHH---hCCCceEEEEeccc
Confidence 4677888888765544433 23566899999876
No 420
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=25.44 E-value=84 Score=30.78 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=21.8
Q ss_pred EEecCCchhHHHHHHHHHHHHcC-CeEEEEe
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLN-LDCYLIL 127 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lG-l~~~ivv 127 (315)
||..|+ |-.|.+.|+.|++.| .+++++=
T Consensus 2 VvVVG~--G~AGl~AA~~aa~~G~~~V~vlE 30 (439)
T TIGR01813 2 VVVVGS--GFAGLSAALSAKKAGAANVVLLE 30 (439)
T ss_pred EEEECC--CHHHHHHHHHHHHcCCccEEEEe
Confidence 334566 889999999999999 8776653
No 421
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.42 E-value=3.6e+02 Score=23.95 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC-ccccc
Q 021235 87 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKI 165 (315)
Q Consensus 87 l~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~-~~~~~ 165 (315)
++++.+.|.+-+|+- +.-..+..+|+++|+.+ +|.-.. | .-+.....+|++++.+=.. ..
T Consensus 69 a~~ai~aGA~FivSP-----~~~~~vi~~a~~~~i~~---iPG~~T-----p---tEi~~A~~~Ga~~vK~FPa~~~--- 129 (201)
T PRK06015 69 FEDAAKAGSRFIVSP-----GTTQELLAAANDSDVPL---LPGAAT-----P---SEVMALREEGYTVLKFFPAEQA--- 129 (201)
T ss_pred HHHHHHcCCCEEECC-----CCCHHHHHHHHHcCCCE---eCCCCC-----H---HHHHHHHHCCCCEEEECCchhh---
Confidence 567888899988864 34578899999999864 555432 2 1377788899998766321 11
Q ss_pred ChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhH
Q 021235 166 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 198 (315)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~ 198 (315)
+-..+++. ++.--++.-++|.||-++.+.
T Consensus 130 GG~~yika----l~~plp~~~l~ptGGV~~~n~ 158 (201)
T PRK06015 130 GGAAFLKA----LSSPLAGTFFCPTGGISLKNA 158 (201)
T ss_pred CCHHHHHH----HHhhCCCCcEEecCCCCHHHH
Confidence 11234343 433234455788888777544
No 422
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=25.31 E-value=3.4e+02 Score=26.59 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 76 SGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 76 gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
.|-+.|.++..+++ -.|++..|++. +|-.+..+|+.|--.|=--.|++|.-+- ......+...||+.+
T Consensus 32 ~G~~v~~FE~~~ae--~~G~k~ava~~--sgT~AL~laL~al~ig~GDeVI~ps~Tf--------vATan~i~~~Ga~PV 99 (374)
T COG0399 32 GGPFVRRFEQAFAE--YLGVKYAVAVS--SGTAALHLALLALAIGPGDEVIVPSFTF--------VATANAVLLVGAKPV 99 (374)
T ss_pred cChHHHHHHHHHHH--HhCCCeEEEec--ChHHHHHHHHHhcCCCCCCEEEecCCch--------HHHHHHHHHcCCeEE
Confidence 36788888776643 46888877663 3556666666644455556788877552 345777888999999
Q ss_pred EEcC
Q 021235 156 LISK 159 (315)
Q Consensus 156 ~v~~ 159 (315)
+|+-
T Consensus 100 FvDi 103 (374)
T COG0399 100 FVDI 103 (374)
T ss_pred EEec
Confidence 9974
No 423
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=25.27 E-value=2.1e+02 Score=26.02 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=33.5
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
.+|+..|+ +|--|++++..|+.+|.+.+++.+... +...++.+|++-++
T Consensus 140 ~~vlI~g~-~~~vg~~~~~~a~~~g~~v~~~~~~~~-----------~~~~~~~~g~~~~~ 188 (323)
T cd05282 140 DWVIQNAA-NSAVGRMLIQLAKLLGFKTINVVRRDE-----------QVEELKALGADEVI 188 (323)
T ss_pred CEEEEccc-ccHHHHHHHHHHHHCCCeEEEEecChH-----------HHHHHHhcCCCEEe
Confidence 45655554 477999999999999998766544321 35566778975433
No 424
>CHL00194 ycf39 Ycf39; Provisional
Probab=25.20 E-value=1.9e+02 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.0
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+..|+ +|.-|..++......|++++++.+.
T Consensus 3 IlVtGa-tG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGA-TGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECC-CcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 333454 5899999998888899998888865
No 425
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=25.08 E-value=1.3e+02 Score=29.86 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=53.1
Q ss_pred CCCCeEEEeCCchhhHH--HHHHHHhcCCCCCeEEEEeccCCchhhHHHHHHH----HhhhcCCCCCCCeEEecCCcc--
Q 021235 219 VKFDDIVVACGSGGTIA--GLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL----LDGLNAGVDSRDIVNIQNVSV-- 290 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~a--Gl~~~~k~~~~~~rVigV~~~g~~~~~~~~i~~l----~~g~~~~~~~~dvv~v~e~~~-- 290 (315)
.+|=.|+-++|.|=|.- .+...+.+.+|+.+|+-+.++. |..+.+..+ ++.+.... .-|++.|+|-+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~---f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~ 188 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED---FTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLA 188 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH---HHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhc
Confidence 35667888888887753 4444455678999999888764 333333332 22333333 556666666422
Q ss_pred -----cchHHHHHHHHHhcCCCC
Q 021235 291 -----YMTFKNILMNILMNGKQP 308 (315)
Q Consensus 291 -----~~~~~~~~~~~~~~~~~~ 308 (315)
-..+..++-.+..+|||.
T Consensus 189 gk~~~qeefFh~FN~l~~~~kqI 211 (408)
T COG0593 189 GKERTQEEFFHTFNALLENGKQI 211 (408)
T ss_pred CChhHHHHHHHHHHHHHhcCCEE
Confidence 455777777888888863
No 426
>PRK06475 salicylate hydroxylase; Provisional
Probab=25.05 E-value=89 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=24.0
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+..|| |=.|.++|.+.++.|++++|+=..
T Consensus 5 V~IvGg--GiaGl~~A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 5 PLIAGA--GVAGLSAALELAARGWAVTIIEKA 34 (400)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 444566 788999999999999998887543
No 427
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=25.02 E-value=2.8e+02 Score=25.20 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=32.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 154 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV 154 (315)
.+++..|+ .|-.|++++..++.+|.+.+++.+... +...++.+|++-
T Consensus 164 ~~vlI~ga-~g~vG~~~~~~a~~~g~~v~~~~~~~~-----------~~~~~~~~~~~~ 210 (332)
T cd08259 164 DTVLVTGA-GGGVGIHAIQLAKALGARVIAVTRSPE-----------KLKILKELGADY 210 (332)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCeEEEEeCCHH-----------HHHHHHHcCCcE
Confidence 45555554 468999999999999999776654321 344556678643
No 428
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=24.92 E-value=1.8e+02 Score=27.06 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=27.5
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEec
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 255 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~ 255 (315)
.+||+|||. +-.++.|+..++++.+- ++.|+|++-
T Consensus 236 ~~~~ai~~~--nD~~A~g~~~al~~~G~~vP~disVigfD~ 274 (343)
T PRK10727 236 RNFTAVACY--NDSMAAGAMGVLNDNGIDVPGEISLIGFDD 274 (343)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceeEEeecC
Confidence 458998874 66778899999998773 678888874
No 429
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=24.85 E-value=1.7e+02 Score=25.39 Aligned_cols=33 Identities=21% Similarity=0.012 Sum_probs=26.1
Q ss_pred CCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEec
Q 021235 218 GVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 255 (315)
Q Consensus 218 ~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~ 255 (315)
|-.||.|+.=.|=|-++ .+|...|++++++-.-
T Consensus 64 Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEEE
Confidence 36799999888877644 6898999999987653
No 430
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=24.84 E-value=6e+02 Score=26.90 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=46.2
Q ss_pred CeEEEEeCCCCC-----CCCchhHHHHHHHHHHHHHHcCCCEEEecCCchh-HHHHHHHHHHHHcCC--eEEEEecCC
Q 021235 61 TEVWLKRDDLSG-----MQLSGNKVRKLEFLMADAVAQGADCIITIGGIQS-NHCRAAAVAAKYLNL--DCYLILRTS 130 (315)
Q Consensus 61 ~~v~vKrEdl~~-----~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~G-Nhg~alA~aa~~lGl--~~~ivvp~~ 130 (315)
..+|+..++..+ -.+|+=|.+-+..++..+++.|...|+. -.=.+ .....+=..|++.|- ++.+|-+..
T Consensus 170 ~p~~l~~~~~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~f-DpkgD~el~~~~~~~~~~~GR~~~f~~~~~~~ 246 (643)
T TIGR03754 170 RPVYLPLGERVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVF-DPKGDADLLKRMYAEAKRAGRLDEFYVFHLGW 246 (643)
T ss_pred cceecccccccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-eCCCCHHHHHHHHHHHHHhCCCCceEEecCCC
Confidence 368887777543 1368889999999999999888654443 32222 344455566888999 677776544
No 431
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=24.84 E-value=2.9e+02 Score=24.67 Aligned_cols=48 Identities=13% Similarity=-0.036 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHH-cC----CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 81 RKLEFLMADAVA-QG----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 81 R~l~~ll~~a~~-~G----~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
|+..+.++.+.+ .+ -.+|+..|- ||-|+.+|....++|.+.+.+.+.+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGf--GnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGL--GNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECC--CHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 344455554433 22 135665553 9999999999999999999998653
No 432
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.82 E-value=89 Score=30.67 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=23.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+.|| .|| |..|.+.|..++++|++++++=.
T Consensus 5 DvvV-IGg--GpaGl~aA~~la~~g~~V~lie~ 34 (441)
T PRK08010 5 QAVI-IGF--GKAGKTLAVTLAKAGWRVALIEQ 34 (441)
T ss_pred CEEE-ECC--CHhHHHHHHHHHHCCCeEEEEcC
Confidence 4444 466 78999999999999999777643
No 433
>PRK07846 mycothione reductase; Reviewed
Probab=24.79 E-value=1.9e+02 Score=28.69 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=28.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
+.++..|| |..|.-+|...+++|.+++++.+...
T Consensus 167 ~~vvIIGg--G~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGG--GFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 45665676 89999999999999999999987654
No 434
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.71 E-value=3.4e+02 Score=26.29 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCchhh
Q 021235 205 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 233 (315)
Q Consensus 205 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 233 (315)
..++.+++.+ .++| +|+++|+|..
T Consensus 73 v~~~~~~~~~----~~~D-~IIaiGGGS~ 96 (383)
T cd08186 73 VDEAAKLGRE----FGAQ-AVIAIGGGSP 96 (383)
T ss_pred HHHHHHHHHH----cCCC-EEEEeCCccH
Confidence 3444555443 2455 5777887654
No 435
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.66 E-value=5.5e+02 Score=23.60 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc
Q 021235 82 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 132 (315)
Q Consensus 82 ~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~ 132 (315)
+.+.++.++.+.|++.++...=. =.....+...|+.+|+..+.++...++
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 55666777888888877765432 246677778888888888887766553
No 436
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.51 E-value=4.6e+02 Score=22.87 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=32.9
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
++..|+ +|.-|.++|..-...|.+.+++.+...+. .......++..+.++..+.
T Consensus 5 vlItG~-sg~iG~~la~~L~~~g~~vi~~~r~~~~~------~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 5 ALVTGG-RRGIGLGIARALAAAGFDLAINDRPDDEE------LAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEEecCchhH------HHHHHHHHHhcCCceEEEE
Confidence 333344 57999999999999999887776443211 0112334445566666654
No 437
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.49 E-value=2.4e+02 Score=27.51 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=37.7
Q ss_pred HcCCCEEEecCCch-----h--HHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch---HHHHHhCCCEEEEEcC
Q 021235 92 AQGADCIITIGGIQ-----S--NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISK 159 (315)
Q Consensus 92 ~~G~~~vVt~g~s~-----G--Nhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n---~~~~r~~GAeV~~v~~ 159 (315)
..| ++|+|++-++ + ....++-..|+..|.++.+|+.++.|. ..|. ...+...|-.+.++.+
T Consensus 165 ~dg-~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~------~qG~rlta~eL~~~GIpvtlI~D 235 (363)
T PRK05772 165 NDG-DTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPW------LQGSRLTVYELMEEGIKVTLITD 235 (363)
T ss_pred CCC-CEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCcc------chhHHHHHHHHHHCCCCEEEEeh
Confidence 344 4677775321 1 223444567778899999999887753 2343 2355667888887765
No 438
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=24.48 E-value=6.5e+02 Score=26.47 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCeEEEEeCCCCC-----CCCchhHHHHHHHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCe--EEEEecCC
Q 021235 60 NTEVWLKRDDLSG-----MQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLD--CYLILRTS 130 (315)
Q Consensus 60 g~~v~vKrEdl~~-----~~~gg~K~R~l~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~--~~ivvp~~ 130 (315)
+..||+-.++.+. -.+|+=|.+-+..++..+++.|...|+.-.--.-.....+-..|++.|-+ +.+|-+..
T Consensus 165 ~~pv~l~~~~~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~dd~~~f~~~~ 242 (634)
T TIGR03743 165 EEDVYLPLGHRVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRPDRFYYFHPAF 242 (634)
T ss_pred CeeEEeecCCCCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 4579998888653 13688899999999999999986555543221112566788889999998 77776544
No 439
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.45 E-value=2e+02 Score=28.16 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=36.8
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch-HHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n-~~~~r~~GAeV~~ 156 (315)
+.|+..|+ |..|..+|...+++|.+++++-+........++..... ...++..|.+++.
T Consensus 158 ~~vvIIGg--G~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~ 217 (438)
T PRK07251 158 ERLGIIGG--GNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLL 217 (438)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 45666676 89999999999999999999876543221111111111 2335667776553
No 440
>PRK06354 pyruvate kinase; Provisional
Probab=24.44 E-value=8.3e+02 Score=25.53 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCeEEEEe---cCCCcccCCCCCc--cchHHHHHhCCCEEEEEcCC----cccccChHHHHHHHHHHHHH
Q 021235 110 RAAAVAAKYLNLDCYLIL---RTSKVLVDQDPGL--IGNLLVERLVGAHIELISKE----EYSKIGSVTLTNILKEKLLK 180 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivv---p~~~~~~~~~p~~--~~n~~~~r~~GAeV~~v~~~----~~~~~~~~~~~~~~~~~l~~ 180 (315)
.-+...|++.|.++++-. .+-... +.|+. ..-+.-.-.-|++-++.+.+ .|-. ...+.+.+.+++.++
T Consensus 267 k~ii~~~~~~gkpvI~ATqmLeSM~~~--p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPv-eaV~~m~~I~~~aE~ 343 (590)
T PRK06354 267 KRLIKKANRLGKPVITATQMLDSMQRN--PRPTRAEASDVANAILDGTDAVMLSNETAAGDYPV-EAVQTMATIAVRIEK 343 (590)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhC--CCCCchhhHHHHHHhhhCCcEEEecccccCCCCHH-HHHHHHHHHHHHHHh
Confidence 457888999999988742 221111 01221 12244445579998888743 2321 123344555544433
Q ss_pred hCCCcEE-e-CC--CCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 181 EGRRPYV-I-PV--GGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 181 ~~~~~y~-i-p~--g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
.. .|. . .. ...++ ........+.++.+++ +.+.||+.+=||.|+--++++ .|++.|+++.+.
T Consensus 344 ~~--~~~~~~~~~~~~~~~-~~~~ia~aa~~~a~~~-------~a~~Iv~~T~sG~ta~~vsk~----Rp~~pI~a~t~~ 409 (590)
T PRK06354 344 DL--PYRDILSKRPEFTTT-ITNAISQAVSHIALQL-------DAAAIVTLTKSGATARNVSKY----RPKTPILAVTPN 409 (590)
T ss_pred cc--chhhhhhhccccCCC-HHHHHHHHHHHHHhhc-------CCCEEEEECCChHHHHHHHhh----CCCCCEEEECCC
Confidence 21 111 0 00 00111 1123334555666655 378999999999998777653 478888888764
No 441
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=24.36 E-value=89 Score=31.93 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.2
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
||..|+ |..|.+.|..|++.|.+++++-.
T Consensus 2 VlVVG~--G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 2 VVIVGA--GLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred EEEECc--cHHHHHHHHHHHHCCCcEEEEec
Confidence 334566 88999999999999999888753
No 442
>PRK07538 hypothetical protein; Provisional
Probab=24.28 E-value=96 Score=30.08 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=23.0
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+..|| |=.|.++|.+.++.|++++||=.
T Consensus 3 V~IVGa--G~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 3 VLIAGG--GIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEEc
Confidence 444465 67899999999999999888744
No 443
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=24.13 E-value=4.8e+02 Score=22.69 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=78.9
Q ss_pred HHHHHHc-CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccC--CC-------CCc----cchHHHHHhCCC
Q 021235 87 MADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVD--QD-------PGL----IGNLLVERLVGA 152 (315)
Q Consensus 87 l~~a~~~-G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~--~~-------p~~----~~n~~~~r~~GA 152 (315)
+.+..++ +++.||.. ..+.....++..++..+++.+.+......... .. +.. ..-...++.+|.
T Consensus 59 ~~~l~~~~~v~~iig~--~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (299)
T cd04509 59 ARRLCQQEGVDALVGP--VSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNW 136 (299)
T ss_pred HHHHhcccCceEEEcC--CCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCC
Confidence 4445555 78877743 22334557778888899998776543221100 00 100 111334555665
Q ss_pred -EEEEEcCC-cccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCc
Q 021235 153 -HIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGS 230 (315)
Q Consensus 153 -eV~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGt 230 (315)
++.++... .+. ....+...+.+++.+.. +...... +.....+.....+|.+ ..+|.||+ ++.
T Consensus 137 ~~v~iv~~~~~~~----~~~~~~~~~~~~~~g~~--i~~~~~~-~~~~~~~~~~~~~l~~--------~~~~~v~~-~~~ 200 (299)
T cd04509 137 KKVAILYDDDSYG----RGLLEAFKAAFKKKGGT--VVGEEYY-PLGTTDFTSLLQKLKA--------AKPDVIVL-CGS 200 (299)
T ss_pred cEEEEEecCchHH----HHHHHHHHHHHHHcCCE--EEEEecC-CCCCccHHHHHHHHHh--------cCCCEEEE-ccc
Confidence 34444332 111 12223333444444322 1111000 0011123233334422 23777766 445
Q ss_pred hhhHHHHHHHHhcCCC--CCeEEEEeccCCchh
Q 021235 231 GGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDY 261 (315)
Q Consensus 231 GGt~aGl~~~~k~~~~--~~rVigV~~~g~~~~ 261 (315)
+..+.++...++..+. +.++++.+......+
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~ 233 (299)
T cd04509 201 GEDAATILKQAAEAGLTGGYPILGITLGLSDVL 233 (299)
T ss_pred chHHHHHHHHHHHcCCCCCCcEEecccccCHHH
Confidence 5888889999988776 788999888766543
No 444
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=24.12 E-value=90 Score=29.84 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=23.4
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+..|| |-.|.++|.+.++.|++++|+=.
T Consensus 4 V~IvGg--G~~Gl~~A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 4 TVILGC--GLSGMLTALSFAQKGIKTTIFES 32 (374)
T ss_pred EEEECC--CHHHHHHHHHHHcCCCeEEEecC
Confidence 333466 78899999999999999988853
No 445
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=24.05 E-value=3e+02 Score=25.40 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHH-cCC----CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 81 RKLEFLMADAVA-QGA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 81 R~l~~ll~~a~~-~G~----~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+..+.+..+.+ .+. .+|+..|- ||-|+.+|.....+|.+.+.+.+.
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGf--GnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGS--GNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEECC
Confidence 456666666543 222 35665554 999999999999999999988764
No 446
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=24.00 E-value=5.5e+02 Score=23.37 Aligned_cols=154 Identities=8% Similarity=-0.005 Sum_probs=77.7
Q ss_pred HHHHHHHc-CCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC-------CcccC-CCCCc----cchHHHHHhCCC
Q 021235 86 LMADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-------KVLVD-QDPGL----IGNLLVERLVGA 152 (315)
Q Consensus 86 ll~~a~~~-G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~-------~~~~~-~~p~~----~~n~~~~r~~GA 152 (315)
.+.+..++ +++.||.. .++....+++..+++.+++++.+.... .+... ..+.. ..-...+...|.
T Consensus 59 ~~~~l~~~~~v~avig~--~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 136 (336)
T cd06326 59 NTRKLIEDDKVFALFGY--VGTPTTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGL 136 (336)
T ss_pred HHHHHHhhcCcEEEEeC--CCchhHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCC
Confidence 34445554 77777743 223345566777888999988763221 01000 00110 011223444566
Q ss_pred E-EEEEcCC-cccccChHHHHHHHHHHHHHhCCCc-E--EeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEe
Q 021235 153 H-IELISKE-EYSKIGSVTLTNILKEKLLKEGRRP-Y--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 227 (315)
Q Consensus 153 e-V~~v~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-y--~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~ 227 (315)
+ |.++... .|. ....+...+.+++.+... . .++.+ ...+.....+|.+ ..+|.||+.
T Consensus 137 ~~v~~l~~~~~~~----~~~~~~~~~~~~~~G~~~~~~~~~~~~------~~d~~~~~~~l~~--------~~~dav~~~ 198 (336)
T cd06326 137 KRIAVFYQDDAFG----KDGLAGVEKALAARGLKPVATASYERN------TADVAAAVAQLAA--------ARPQAVIMV 198 (336)
T ss_pred ceEEEEEecCcch----HHHHHHHHHHHHHcCCCeEEEEeecCC------cccHHHHHHHHHh--------cCCCEEEEE
Confidence 4 4444321 121 123344444555544321 1 11111 1112223334332 247888876
Q ss_pred CCchhhHHHHHHHHhcCCCCCeEEEEeccCCch
Q 021235 228 CGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 260 (315)
Q Consensus 228 vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~ 260 (315)
.- +..+.++.+.+++.+.+.+++++...+...
T Consensus 199 ~~-~~~a~~~i~~~~~~G~~~~~~~~~~~~~~~ 230 (336)
T cd06326 199 GA-YKAAAAFIRALRKAGGGAQFYNLSFVGADA 230 (336)
T ss_pred cC-cHHHHHHHHHHHhcCCCCcEEEEeccCHHH
Confidence 63 346788999999999899999887766543
No 447
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=23.98 E-value=5.8e+02 Score=23.57 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=24.4
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccch--HHHHHhCCCEEEEEcC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISK 159 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n--~~~~r~~GAeV~~v~~ 159 (315)
+.|+|+|+ |..-..+-.. + +-...+++.++.|.. .|. ...+...|-++.++.+
T Consensus 88 dvILT~s~--S~~v~~~l~~-~--~~~~~V~v~ESrP~~------eG~~~a~~L~~~GI~vtli~D 142 (253)
T PRK06372 88 SVIGTISS--SQVLKAFISS-S--EKIKSVYILESRPML------EGIDMAKLLVKSGIDVVLLTD 142 (253)
T ss_pred CEEEEeCC--cHHHHHHHHh-c--CCCCEEEEecCCCch------HHHHHHHHHHHCCCCEEEEeh
Confidence 67778863 2232222212 1 222355665655421 232 3333445777766654
No 448
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.97 E-value=4e+02 Score=23.58 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=52.5
Q ss_pred HHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC-Cccccc
Q 021235 87 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSKI 165 (315)
Q Consensus 87 l~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~-~~~~~~ 165 (315)
+.+|.+.|.+-+|+- |.-..+...|+++|+.++ |.-.. | ..+.....+|++++.+=. +.+
T Consensus 73 a~~a~~aGA~FivSP-----~~~~~v~~~~~~~~i~~i---PG~~T-----p---tEi~~A~~~G~~~vK~FPA~~~--- 133 (196)
T PF01081_consen 73 AEAAIAAGAQFIVSP-----GFDPEVIEYAREYGIPYI---PGVMT-----P---TEIMQALEAGADIVKLFPAGAL--- 133 (196)
T ss_dssp HHHHHHHT-SEEEES-----S--HHHHHHHHHHTSEEE---EEESS-----H---HHHHHHHHTT-SEEEETTTTTT---
T ss_pred HHHHHHcCCCEEECC-----CCCHHHHHHHHHcCCccc---CCcCC-----H---HHHHHHHHCCCCEEEEecchhc---
Confidence 566788898888865 356789999999999765 33221 1 136777889999876632 222
Q ss_pred ChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHH
Q 021235 166 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 200 (315)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G 200 (315)
+-..+++ .++.--++.-++|.||-++.+...
T Consensus 134 GG~~~ik----~l~~p~p~~~~~ptGGV~~~N~~~ 164 (196)
T PF01081_consen 134 GGPSYIK----ALRGPFPDLPFMPTGGVNPDNLAE 164 (196)
T ss_dssp THHHHHH----HHHTTTTT-EEEEBSS--TTTHHH
T ss_pred CcHHHHH----HHhccCCCCeEEEcCCCCHHHHHH
Confidence 1123433 344333455678999877765533
No 449
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=23.77 E-value=95 Score=31.76 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=24.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+.|| .|| |-.|.++|+.+++.|++++++=.
T Consensus 8 DVvI-IGG--Gi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 8 DVII-IGG--GATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred cEEE-ECc--CHHHHHHHHHHHHcCCeEEEEEC
Confidence 4444 566 78899999999999999887754
No 450
>PRK09701 D-allose transporter subunit; Provisional
Probab=23.70 E-value=5.7e+02 Score=23.40 Aligned_cols=203 Identities=11% Similarity=0.030 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCc------------ccCCCCCccch---HHHHH
Q 021235 84 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV------------LVDQDPGLIGN---LLVER 148 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~------------~~~~~p~~~~n---~~~~r 148 (315)
...+.....++.+.+|..+......-..+ ..+...|++++.+-..... ....+....+. ..+++
T Consensus 72 ~~~i~~l~~~~vDgiIi~~~~~~~~~~~l-~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~ 150 (311)
T PRK09701 72 LQLFEDLSNKNYKGIAFAPLSSVNLVMPV-ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIID 150 (311)
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHHHHHH-HHHHHCCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHH
Confidence 34455667788999887643221111222 3346789998877532110 00000000111 11223
Q ss_pred hCC---CEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 021235 149 LVG---AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIV 225 (315)
Q Consensus 149 ~~G---AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~iv 225 (315)
.+| .+|.++....... ....+.+-..+.+++.+ ..-+......+.....++ ....++.++- .++|+||
T Consensus 151 ~~g~~~~~i~~l~g~~~~~-~~~~R~~Gf~~al~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ll~~~------~~~~~I~ 221 (311)
T PRK09701 151 KLGAEGGEVAIIEGKAGNA-SGEARRNGATEAFKKAS-QIKLVASQPADWDRIKAL-DVATNVLQRN------PNIKAIY 221 (311)
T ss_pred HhCCCCCEEEEEECCCCCc-cHHHHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH-HHHHHHHHhC------CCCCEEE
Confidence 344 4777764321111 12233343444555433 122221111111111222 2334443331 3588877
Q ss_pred EeCCchhhHHHHHHHHhcCCC--CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchHHHHHHHHHh
Q 021235 226 VACGSGGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILM 303 (315)
Q Consensus 226 v~vGtGGt~aGl~~~~k~~~~--~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~ 303 (315)
|.- ..++.|+..++++.+. ++.|+|++-.... ....+. +. ..-.|..+-...-.....+|.+.+.
T Consensus 222 ~~~--d~~A~g~~~al~~~G~~~dv~vvg~d~~~~~-------~~~~~~-~~---i~ttv~~~~~~~G~~a~~~l~~~i~ 288 (311)
T PRK09701 222 CAN--DTMAMGVAQAVANAGKTGKVLVVGTDGIPEA-------RKMVEA-GQ---MTATVAQNPADIGATGLKLMVDAEK 288 (311)
T ss_pred ECC--cchHHHHHHHHHHcCCCCCEEEEEeCCCHHH-------HHHHHc-CC---ceEEEecCHHHHHHHHHHHHHHHHh
Confidence 544 4467788899987664 5667776654211 111110 00 1112333323444455666667777
Q ss_pred cCCCCC
Q 021235 304 NGKQPT 309 (315)
Q Consensus 304 ~~~~~~ 309 (315)
+||.|+
T Consensus 289 ~~~~~~ 294 (311)
T PRK09701 289 SGKVIP 294 (311)
T ss_pred CCCCCC
Confidence 888763
No 451
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=23.68 E-value=2.2e+02 Score=29.73 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=37.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCccc-----CCCCC-----ccchHHHHHhCCCEEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV-----DQDPG-----LIGNLLVERLVGAHIELI 157 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~-----~~~p~-----~~~n~~~~r~~GAeV~~v 157 (315)
+.|+..|| |-.|.+.|+..+++|+++++|=.....-- -+... ....+..++.+|.+++.-
T Consensus 311 kkVaIIG~--GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGA--GPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECc--CHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 45665676 78999999999999999888854432100 00000 012456778899887653
No 452
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.65 E-value=95 Score=31.27 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
.+.|| .|| |=.|.++|+.+++.|+++.++=..
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFV-IGG--GINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEE-ECC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 35445 466 788999999999999997777544
No 453
>PRK07677 short chain dehydrogenase; Provisional
Probab=23.59 E-value=5e+02 Score=22.71 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=21.6
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
+|+ |+ +|.-|.++|....+.|.+++++.+
T Consensus 5 lIt-G~-s~giG~~ia~~l~~~G~~Vi~~~r 33 (252)
T PRK07677 5 IIT-GG-SSGMGKAMAKRFAEEGANVVITGR 33 (252)
T ss_pred EEe-CC-CChHHHHHHHHHHHCCCEEEEEeC
Confidence 444 54 467999999999999997666644
No 454
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=23.52 E-value=95 Score=32.46 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
.+.|| .|| |-.|.++|+.+++.|++++++=.
T Consensus 72 ~DVvV-IGG--Gi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 72 LDVLV-VGG--GATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred cCEEE-ECC--CHHHHHHHHHHHhCCCEEEEEec
Confidence 45555 566 78899999999999999666643
No 455
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=23.34 E-value=1.4e+02 Score=26.73 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCchhhHHHHHHHH--hcCCCCCeEEEEeccC
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGS--WLGTLKAKVHAFSVCD 257 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~--k~~~~~~rVigV~~~g 257 (315)
.+||.|++++|.=-|+=-++..- ++..|.+||--|.+.+
T Consensus 33 ~ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvD 73 (203)
T PF09363_consen 33 EEPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVD 73 (203)
T ss_dssp TT-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESB
T ss_pred CCCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeE
Confidence 57999999999988877666553 4567888888787764
No 456
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=23.33 E-value=6e+02 Score=24.28 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=13.9
Q ss_pred chHHHHHhCCCEEEEEc
Q 021235 142 GNLLVERLVGAHIELIS 158 (315)
Q Consensus 142 ~n~~~~r~~GAeV~~v~ 158 (315)
+-....+.+|++++.++
T Consensus 132 ~~~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 132 NHRAIFEAAGLEVKTYP 148 (396)
T ss_pred cHHHHHHHcCCcEEEEe
Confidence 35778889999999886
No 457
>PRK05868 hypothetical protein; Validated
Probab=23.30 E-value=1.1e+02 Score=29.33 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=23.0
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
|+..|| |-.|.++|...++.|++++|+=
T Consensus 4 V~IvGg--G~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 4 VVVSGA--SVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCCEEEEc
Confidence 444565 7889999999999999988874
No 458
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=23.29 E-value=4.8e+02 Score=25.14 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=32.7
Q ss_pred HhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEe
Q 021235 148 RLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 227 (315)
Q Consensus 148 r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~ 227 (315)
+.+|-++.+|.+... . .++++.+.+++.+-...++. ...||.. +...|+.++..+ .++| +|++
T Consensus 19 ~~~~~r~livtd~~~-----~-~~~~v~~~L~~~g~~~~~~~-~~~~p~~-----~~v~~~~~~~~~----~~~D-~IIa 81 (374)
T cd08183 19 AELGRRVLLVTGASS-----L-RAAWLIEALRAAGIEVTHVV-VAGEPSV-----ELVDAAVAEARN----AGCD-VVIA 81 (374)
T ss_pred HHcCCcEEEEECCch-----H-HHHHHHHHHHHcCCeEEEec-CCCCcCH-----HHHHHHHHHHHh----cCCC-EEEE
Confidence 444656655543211 0 23444555655443322222 2224431 234455555543 3465 5788
Q ss_pred CCchhhH
Q 021235 228 CGSGGTI 234 (315)
Q Consensus 228 vGtGGt~ 234 (315)
+|+|..+
T Consensus 82 iGGGS~~ 88 (374)
T cd08183 82 IGGGSVI 88 (374)
T ss_pred ecCchHH
Confidence 8887653
No 459
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=23.29 E-value=2.2e+02 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=27.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
++|+..|| |..|..+|...+++|.+++++-+..
T Consensus 181 ~~vvIIGg--G~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGG--GVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCeEEEEEecC
Confidence 45666776 8999999999999999999886654
No 460
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.28 E-value=6.3e+02 Score=23.74 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=28.0
Q ss_pred cCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 93 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 93 ~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
+|...||| | +||--|.++|+.=++.|.+.+++.....
T Consensus 11 ~~kvVvIT-G-ASsGIG~~lA~~la~~G~~l~lvar~~r 47 (282)
T KOG1205|consen 11 AGKVVLIT-G-ASSGIGEALAYELAKRGAKLVLVARRAR 47 (282)
T ss_pred CCCEEEEe-C-CCcHHHHHHHHHHHhCCCceEEeehhhh
Confidence 45344444 4 4567899999999999999999987654
No 461
>PRK08226 short chain dehydrogenase; Provisional
Probab=23.26 E-value=5.1e+02 Score=22.73 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=8.8
Q ss_pred CCCeEEEEeccC
Q 021235 246 LKAKVHAFSVCD 257 (315)
Q Consensus 246 ~~~rVigV~~~g 257 (315)
.+++|..|.+..
T Consensus 176 ~~i~v~~i~pg~ 187 (263)
T PRK08226 176 SGIRVNAICPGY 187 (263)
T ss_pred cCcEEEEEecCc
Confidence 468888887753
No 462
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=23.26 E-value=2e+02 Score=26.99 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCeEEEEecCC
Q 021235 110 RAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 110 ~alA~aa~~lGl~~~ivvp~~ 130 (315)
..+-..|++.+.++++++-+.
T Consensus 144 l~~L~~Aa~~~~~F~V~vTEs 164 (313)
T KOG1466|consen 144 LEVLLTAAQNKKRFRVYVTES 164 (313)
T ss_pred HHHHHHHHhcCceEEEEEecC
Confidence 333344445555555555444
No 463
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=23.19 E-value=6.7e+02 Score=24.01 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=67.9
Q ss_pred cCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEEec--CCC--cc---cCCCCCccch--HHH-HHhCCCEEEEEcCC-c
Q 021235 93 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR--TSK--VL---VDQDPGLIGN--LLV-ERLVGAHIELISKE-E 161 (315)
Q Consensus 93 ~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp--~~~--~~---~~~~p~~~~n--~~~-~r~~GAeV~~v~~~-~ 161 (315)
.++.-|+ |+.+|....+++-.+++.++..+.--. ... +. ...+...... ... .+..|.++..+... .
T Consensus 67 d~v~~vi--G~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~~va~l~~d~~ 144 (374)
T TIGR03669 67 DKVDALW--AGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEYGKKIYTIAADYN 144 (374)
T ss_pred CCCCEEE--cCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcCCCeEEEEcCCcH
Confidence 4677666 555677888888889999987764210 000 00 0000000000 122 23457777666542 2
Q ss_pred ccccChHHHHHHHHHHHHHhCCCc---EEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHH
Q 021235 162 YSKIGSVTLTNILKEKLLKEGRRP---YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLS 238 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~---y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~ 238 (315)
|.. ...+...+.+++.|... ..+|.+. .-|.....+| .. .+||.||+..- |+-...+.
T Consensus 145 ~g~----~~~~~~~~~~~~~G~~vv~~~~~~~g~------~Df~~~l~~i----~~----~~pD~V~~~~~-g~~~~~~~ 205 (374)
T TIGR03669 145 FGQ----LSADWVRVIAKENGAEVVGEEFIPLSV------SQFSSTIQNI----QK----ADPDFVMSMLV-GANHASFY 205 (374)
T ss_pred HHH----HHHHHHHHHHHHcCCeEEeEEecCCCc------chHHHHHHHH----HH----cCCCEEEEcCc-CCcHHHHH
Confidence 321 12222233344444322 1223221 1222233333 32 36999997543 44456678
Q ss_pred HHHhcCCCCCeEEEE
Q 021235 239 LGSWLGTLKAKVHAF 253 (315)
Q Consensus 239 ~~~k~~~~~~rVigV 253 (315)
+.+++.+.+.++++.
T Consensus 206 kq~~~~G~~~~~~~~ 220 (374)
T TIGR03669 206 EQAASANLNLPMGTS 220 (374)
T ss_pred HHHHHcCCCCcccch
Confidence 888888777776543
No 464
>PRK08401 L-aspartate oxidase; Provisional
Probab=23.19 E-value=1.1e+02 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=23.2
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
||..|+ |..|.+.|..|++.|.+++++-.
T Consensus 4 VvVVGa--G~AGl~AAi~aae~G~~V~liek 32 (466)
T PRK08401 4 VGIVGG--GLAGLTAAISLAKKGFDVTIIGP 32 (466)
T ss_pred EEEECc--cHHHHHHHHHHHHCCCeEEEEeC
Confidence 444566 88999999999999999877743
No 465
>PRK10083 putative oxidoreductase; Provisional
Probab=23.15 E-value=2.7e+02 Score=25.74 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=34.1
Q ss_pred CEEEecCCchhHHHHHHHHHHHH-cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~-lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..| + |--|++++..|+. +|.+.++.+.... .+..+++.+|++-++
T Consensus 162 ~~vlI~g-~-g~vG~~~~~~a~~~~G~~~v~~~~~~~----------~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 162 DVALIYG-A-GPVGLTIVQVLKGVYNVKAVIVADRID----------ERLALAKESGADWVI 211 (339)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHhCCCCEEEEEcCCH----------HHHHHHHHhCCcEEe
Confidence 4666666 3 5678888888886 6998777664432 367788889996554
No 466
>PRK09620 hypothetical protein; Provisional
Probab=23.11 E-value=1.3e+02 Score=27.21 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEec
Q 021235 104 IQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 104 s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
|+|=.|..+|..+...|.+++++..
T Consensus 27 SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 27 AKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 5689999999999999999888864
No 467
>PRK06139 short chain dehydrogenase; Provisional
Probab=23.10 E-value=6.4e+02 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHcCCCEEEecCCchhHHHHHHHHHHHHcCCeEEEE
Q 021235 87 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 126 (315)
Q Consensus 87 l~~a~~~G~~~vVt~g~s~GNhg~alA~aa~~lGl~~~iv 126 (315)
.....++|.+-++ .+ -.......++..++..|.++.++
T Consensus 24 a~~la~~G~~Vvl-~~-R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 24 AEAFARRGARLVL-AA-RDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred HHHHHHCCCEEEE-EE-CCHHHHHHHHHHHHhcCCcEEEE
Confidence 4445567876444 32 22344555666677778776544
No 468
>PRK13671 hypothetical protein; Provisional
Probab=23.02 E-value=4.1e+02 Score=25.17 Aligned_cols=53 Identities=6% Similarity=0.006 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCc---cchHHHHHhCCCEEEEE
Q 021235 105 QSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVGAHIELI 157 (315)
Q Consensus 105 ~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~---~~n~~~~r~~GAeV~~v 157 (315)
+--|..-+-.+.++++...++++|...+.++..|.. ..+..+++..|+++|+-
T Consensus 13 H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViE 68 (298)
T PRK13671 13 HNGHIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIK 68 (298)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Confidence 444666666666778888887777666544433322 23466677778887663
No 469
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=23.00 E-value=2.9e+02 Score=27.64 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=33.5
Q ss_pred EEEecCC-chhHHHHHHHHHHHHc-CCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEc
Q 021235 97 CIITIGG-IQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 158 (315)
Q Consensus 97 ~vVt~g~-s~GNhg~alA~aa~~l-Gl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~ 158 (315)
+|+.+|- ..+|.+++++.+++.+ |++++++.|+.-.. + ..-+..++..|+.+....
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~----~--~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEM----P--AYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcccc----C--HHHHHHHHhcCCeEEEEc
Confidence 4444442 2378899999886654 99999998875411 1 111334445677766544
No 470
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.99 E-value=2.9e+02 Score=27.32 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=36.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCC-eEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl-~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|| ||.|.-+|..+.++|. +++++.+...... +.....+..++..|.+++.
T Consensus 274 ~~VvViGg--G~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~---~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 274 KRVVVIGG--GNTAMDAARTAKRLGAESVTIVYRRGREEM---PASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCCeEEEeeecCcccC---CCCHHHHHHHHHCCCEEEe
Confidence 45665676 8999999999999999 6777765432110 1111124556777877764
No 471
>PRK07236 hypothetical protein; Provisional
Probab=22.95 E-value=1.1e+02 Score=29.34 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=25.2
Q ss_pred EEEecCCchhHHHHHHHHHHHHcCCeEEEEecCC
Q 021235 97 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 130 (315)
Q Consensus 97 ~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~ 130 (315)
.|+..|| |=.|.++|.+-++.|++++||=...
T Consensus 8 ~ViIVGa--G~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 8 RAVVIGG--SLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3554566 7789999999999999998886543
No 472
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.95 E-value=1.1e+02 Score=29.25 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.9
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
|+..|| |=.|.++|.+.++.|++++|+=..
T Consensus 7 V~IvGa--GiaGl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 7 VLIVGG--GIGGLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred EEEECC--cHHHHHHHHHHHhCCCcEEEEeeC
Confidence 444565 678999999999999999888544
No 473
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=22.94 E-value=1e+02 Score=31.49 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
+|.|| .|+ |..|.+.|..|++.|.+++++-
T Consensus 5 ~DVvV-VG~--G~AGl~AAl~Aa~~G~~VivlE 34 (549)
T PRK12834 5 ADVIV-VGA--GLAGLVAAAELADAGKRVLLLD 34 (549)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEe
Confidence 45444 565 8999999999999999977763
No 474
>PRK06949 short chain dehydrogenase; Provisional
Probab=22.90 E-value=5.1e+02 Score=22.57 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=23.9
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
++++..|+ +|.-|.++|....+.|.+.+++.+.
T Consensus 10 k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGA-SSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34444454 4789999999999999987766543
No 475
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.90 E-value=2e+02 Score=25.72 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=31.4
Q ss_pred eEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCchhhHH
Q 021235 223 DIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD 264 (315)
Q Consensus 223 ~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~~~~~ 264 (315)
.+|+..|+|+.+-.+..+.+.-..+.+|.+|-......|..+
T Consensus 3 i~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~le 44 (200)
T COG0299 3 IAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALE 44 (200)
T ss_pred EEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH
Confidence 468888999999999988885555778888877776555433
No 476
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.89 E-value=1.7e+02 Score=25.00 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=63.7
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCCcccccChHHHHHHHH
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 175 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~ 175 (315)
.+|...|- |+-|+++|..++.+|++++.+=|...+ ......+|.+. . .. +++
T Consensus 37 ~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~-----------~~~~~~~~~~~---~--~l---------~el- 88 (178)
T PF02826_consen 37 KTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKP-----------EEGADEFGVEY---V--SL---------DEL- 88 (178)
T ss_dssp SEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHH-----------HHHHHHTTEEE---S--SH---------HHH-
T ss_pred CEEEEEEE--cCCcCeEeeeeecCCceeEEecccCCh-----------hhhccccccee---e--eh---------hhh-
Confidence 35544554 899999999999999998888665431 11233444211 1 11 211
Q ss_pred HHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHH--HHHHHhcCCCCCeEEEE
Q 021235 176 EKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAG--LSLGSWLGTLKAKVHAF 253 (315)
Q Consensus 176 ~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aG--l~~~~k~~~~~~rVigV 253 (315)
+++..--...+|.... ... -+..|..+++ +.+.+|+-+|-|+.+-- +..+++ ..++.=.+.
T Consensus 89 --l~~aDiv~~~~plt~~-T~~-----li~~~~l~~m-------k~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga~l 151 (178)
T PF02826_consen 89 --LAQADIVSLHLPLTPE-TRG-----LINAEFLAKM-------KPGAVLVNVARGELVDEDALLDALE--SGKIAGAAL 151 (178)
T ss_dssp --HHH-SEEEE-SSSSTT-TTT-----SBSHHHHHTS-------TTTEEEEESSSGGGB-HHHHHHHHH--TTSEEEEEE
T ss_pred --cchhhhhhhhhccccc-cce-----eeeeeeeecc-------ccceEEEeccchhhhhhhHHHHHHh--hccCceEEE
Confidence 2222200122343211 111 2345666666 47899999999998744 444444 345566666
Q ss_pred eccCCc
Q 021235 254 SVCDDP 259 (315)
Q Consensus 254 ~~~g~~ 259 (315)
++-...
T Consensus 152 DV~~~E 157 (178)
T PF02826_consen 152 DVFEPE 157 (178)
T ss_dssp SS-SSS
T ss_pred ECCCCC
Confidence 765543
No 477
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=22.86 E-value=3.8e+02 Score=24.71 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCEEEecCCchh-HHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcC
Q 021235 84 EFLMADAVAQGADCIITIGGIQS-NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 159 (315)
Q Consensus 84 ~~ll~~a~~~G~~~vVt~g~s~G-Nhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~ 159 (315)
.+.+.+|...|++.|+..-+.-+ .....+...|..+|+.+.+=+.... -+......|++++-+.+
T Consensus 121 ~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~-----------El~~al~~~a~iiGINn 186 (254)
T PF00218_consen 121 PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE-----------ELERALEAGADIIGINN 186 (254)
T ss_dssp HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH-----------HHHHHHHTT-SEEEEES
T ss_pred HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH-----------HHHHHHHcCCCEEEEeC
Confidence 45677888999998654333333 4448999999999999998775432 25666678999998875
No 478
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=22.84 E-value=2.9e+02 Score=27.24 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=53.0
Q ss_pred ccCCCCCChhhhcCCCCcC-----cccCCCCCCCccccCC-C--CCCC-------------CCeEEEEeCCCC-CCCCch
Q 021235 20 KTSYAPPSWASHLAPIPSH-----VFSLGHFPTPIHKWNL-P--NLPH-------------NTEVWLKRDDLS-GMQLSG 77 (315)
Q Consensus 20 ~~~~~~p~~~~~l~~~p~~-----r~~~~~~~TPL~~~~~-~--~L~~-------------g~~v~vKrEdl~-~~~~gg 77 (315)
.+-+.||+|...+.. |+. |=.+.+..-||.---. | .|+. |+. |+|.|-.+ ...+.-
T Consensus 93 ~Di~~P~~~~~~f~G-P~fGi~G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD-~IKDDE~l~~q~~~p 170 (391)
T cd08209 93 VDLRLPEEFGRAFPG-PKFGIEGIRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVD-LIKDDEILFDNPLAP 170 (391)
T ss_pred EEecCCHHHHhcCCC-CCCCchHHHHHhCCCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCC-cccccccCCCCCCCC
Confidence 556778888776655 322 2124455566653111 1 1211 344 68877543 222556
Q ss_pred hHHHHHHHH--HHHHH-HcCCCEEE--ecCCchhHHHHHHHHHHHHcCCeEEEEec
Q 021235 78 NKVRKLEFL--MADAV-AQGADCII--TIGGIQSNHCRAAAVAAKYLNLDCYLILR 128 (315)
Q Consensus 78 ~K~R~l~~l--l~~a~-~~G~~~vV--t~g~s~GNhg~alA~aa~~lGl~~~ivvp 128 (315)
++.|-...+ +.++. +.|.+++- -..+. ..-.+-=|-.++.+|.++..+-+
T Consensus 171 ~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~~ 225 (391)
T cd08209 171 ALERIRACRPVLQEVYEQTGRRTLYAVNLTGP-VFTLKEKARRLVEAGANALLFNV 225 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEec
Confidence 887754332 33433 34554331 11122 35566666667777776665543
No 479
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=22.80 E-value=1e+02 Score=29.09 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=23.6
Q ss_pred cCCchhHHHHHHHHHHHHcCCeEEEEecCCC
Q 021235 101 IGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 131 (315)
Q Consensus 101 ~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~ 131 (315)
.|+ |-.|.++|.+-++.|++++|+=....
T Consensus 5 vGa--G~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 5 VGG--GMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred ECC--CHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 465 78899999999999999988865543
No 480
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=22.77 E-value=1.2e+02 Score=31.16 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=29.7
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccCCch
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 260 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g~~~ 260 (315)
..+|+|||..|++|.+ .+.++..+..+|+-.|.-+...
T Consensus 6 ~~~D~vIVGsG~aG~~----lA~rLs~~g~~VllLEaG~~~~ 43 (542)
T COG2303 6 MEYDYVIVGSGSAGSV----LAARLSDAGLSVLVLEAGGPDR 43 (542)
T ss_pred CCCCEEEECCCchhHH----HHHHhcCCCCeEEEEeCCCCCC
Confidence 4699999999987754 4555567899999999987543
No 481
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=22.70 E-value=2.1e+02 Score=26.19 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=33.6
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+..|+ .|-.|++++..|+.+|++.+.+.+.. .+...++.+|++-++
T Consensus 142 ~~vlI~g~-~g~ig~~~~~lak~~G~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 142 EQFLFHAA-AGGVGLIACQWAKALGAKLIGTVGSA-----------QKAQRAKKAGAWQVI 190 (327)
T ss_pred CEEEEEeC-CcHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHCCCCEEE
Confidence 56665553 47899999999999999866554322 245566788985433
No 482
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=22.69 E-value=99 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEe
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 127 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivv 127 (315)
++.|| .|+ | .|.+.|+.|++.|.+++++=
T Consensus 8 ~DVvV-VG~--G-aGl~aA~~aa~~G~~V~vlE 36 (513)
T PRK12837 8 VDVLV-AGS--G-GGVAGAYTAAREGLSVALVE 36 (513)
T ss_pred cCEEE-ECc--h-HHHHHHHHHHHCCCcEEEEe
Confidence 35444 565 8 99999999999999877663
No 483
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=22.68 E-value=1.2e+02 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 98 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 98 vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+| .|| |=.|.++|...++.|++++++=..
T Consensus 4 ~I-iGa--G~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 4 VV-VGA--GPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred EE-ECC--CHHHHHHHHHHHHCCCeEEEEecc
Confidence 44 455 667999999999999998777544
No 484
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.66 E-value=5.2e+02 Score=22.55 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021235 144 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 223 (315)
Q Consensus 144 ~~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~ 223 (315)
...+...|++|+.+.+.. ....+..+++.+.+.+..++..+-+++..... ...++.++. ..+|.
T Consensus 24 a~~l~~~G~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~---~~~~~~~~~------~~~d~ 87 (262)
T PRK13394 24 ALELARAGAAVAIADLNQ-------DGANAVADEINKAGGKAIGVAMDVTNEDAVNA---GIDKVAERF------GSVDI 87 (262)
T ss_pred HHHHHHCCCeEEEEeCCh-------HHHHHHHHHHHhcCceEEEEECCCCCHHHHHH---HHHHHHHHc------CCCCE
Q ss_pred EEEeCC
Q 021235 224 IVVACG 229 (315)
Q Consensus 224 ivv~vG 229 (315)
||..+|
T Consensus 88 vi~~ag 93 (262)
T PRK13394 88 LVSNAG 93 (262)
T ss_pred EEECCc
No 485
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=22.62 E-value=2.1e+02 Score=26.64 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=28.4
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEecc
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVC 256 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~~ 256 (315)
.+||+|||. +...+.|+..++++.+. ++.|+|++-.
T Consensus 236 ~~~~ai~~~--nd~~A~g~~~al~~~G~~vP~disvigfD~~ 275 (346)
T PRK10401 236 LQLTAVFAY--NDNMAAGALTALKDNGIAIPLHLSIIGFDDI 275 (346)
T ss_pred CCCcEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEEEeCCc
Confidence 358999875 56778899999998763 6789999754
No 486
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=22.61 E-value=2.1e+02 Score=26.09 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=24.1
Q ss_pred CCEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 95 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 95 ~~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
.|.+| .|+ |=.|.+.|+.+++.|+++.++=..
T Consensus 26 ~DVvI-VGg--GpAGl~AA~~la~~G~~V~liEk~ 57 (257)
T PRK04176 26 VDVAI-VGA--GPSGLTAAYYLAKAGLKVAVFERK 57 (257)
T ss_pred CCEEE-ECc--cHHHHHHHHHHHhCCCeEEEEecC
Confidence 35555 455 667899999999999998887543
No 487
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=22.60 E-value=2.5e+02 Score=23.60 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHHHHcCC--CEEEecCCchhHHHHHHHHHHHH-cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC
Q 021235 85 FLMADAVAQGA--DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 160 (315)
Q Consensus 85 ~ll~~a~~~G~--~~vVt~g~s~GNhg~alA~aa~~-lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~ 160 (315)
..+.++...|. ..|+.||+ |++++.+|++ .|++|-++.+.... ...-+-..|+|+..+..
T Consensus 46 ~~va~~V~~~~~~~GIliCGt-----GiG~siaANK~~GIraa~~~d~~~A-----------~~ar~hNnaNvl~lG~r 108 (143)
T TIGR01120 46 KQVALAVAGGEVDGGILICGT-----GIGMSIAANKFAGIRAALCSEPYMA-----------QMSRLHNDANVLCLGER 108 (143)
T ss_pred HHHHHHHHCCCCceEEEEcCC-----cHHHHHHHhcCCCeEEEEECCHHHH-----------HHHHHhcCCcEEEECcc
Confidence 33455555552 35666653 7888988888 89999999654321 22334567899888853
No 488
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=22.56 E-value=1.5e+02 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=26.4
Q ss_pred CCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEeccC
Q 021235 221 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 257 (315)
Q Consensus 221 ~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~g 257 (315)
+|+||+. +..++.|+..++++.+ +.|+|++-..
T Consensus 184 pdaI~~~--nd~~A~gv~~al~~~g--isIvGfD~~~ 216 (265)
T cd06354 184 ADVIFAA--AGGTGNGVFQAAKEAG--VYAIGVDSDQ 216 (265)
T ss_pred CcEEEEC--CCCCchHHHHHHHhcC--CeEEEecCcc
Confidence 7887776 5567789999999887 8888887753
No 489
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=22.48 E-value=2.7e+02 Score=25.23 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=32.2
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 155 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~ 155 (315)
+.|+..|+ .|-.|.+++..|+.+|.+.+.+.+.. .+...++.+|++-+
T Consensus 144 ~~vlI~g~-~~~~g~~~~~la~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~ 191 (324)
T cd08244 144 DVVLVTAA-AGGLGSLLVQLAKAAGATVVGAAGGP-----------AKTALVRALGADVA 191 (324)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCH-----------HHHHHHHHcCCCEE
Confidence 45655554 47899999999999999854443221 13555677888543
No 490
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=22.42 E-value=2.5e+02 Score=23.61 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCC--CEEEecCCchhHHHHHHHHHHHH-cCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEEEcCC
Q 021235 84 EFLMADAVAQGA--DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 160 (315)
Q Consensus 84 ~~ll~~a~~~G~--~~vVt~g~s~GNhg~alA~aa~~-lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~v~~~ 160 (315)
...+.++...|. ..|+.||+ |++++.+|++ .|++|-++.+.... ...-+-.+|+|+..+..
T Consensus 44 a~~va~~V~~g~~~~GIliCGt-----GiG~siaANK~~GIraa~~~d~~~A-----------~~ar~hNnaNVl~lGar 107 (144)
T TIGR00689 44 AKLVADKVVAGEVSLGILICGT-----GIGMSIAANKFKGIRAALCVDEYTA-----------ALARQHNDANVLCLGSR 107 (144)
T ss_pred HHHHHHHHHcCCCceEEEEcCC-----cHHHHHHHhcCCCeEEEEECCHHHH-----------HHHHHhcCCcEEEECcc
Confidence 334555555553 35776753 7889999988 89999999654321 22334568899988853
No 491
>PRK08013 oxidoreductase; Provisional
Probab=22.40 E-value=1e+02 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=24.0
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecC
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 129 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~ 129 (315)
+.+| .|+ |=.|.++|.+-++.|++++++=..
T Consensus 5 dV~I-vGa--GpaGl~~A~~La~~G~~v~viE~~ 35 (400)
T PRK08013 5 DVVI-AGG--GMVGLAVACGLQGSGLRVAVLEQR 35 (400)
T ss_pred CEEE-ECc--CHHHHHHHHHHhhCCCEEEEEeCC
Confidence 3344 465 788999999999999998887543
No 492
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=22.38 E-value=1.2e+02 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=28.1
Q ss_pred CCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 220 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
+...+++..|++||+-..++.++.. .++|+||...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~--~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARL--DIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccC--CCCEEEEeCC
Confidence 4667888899999998888777654 4899999986
No 493
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.34 E-value=5.2e+02 Score=22.47 Aligned_cols=12 Identities=8% Similarity=-0.343 Sum_probs=8.9
Q ss_pred CCCeEEEEeccC
Q 021235 246 LKAKVHAFSVCD 257 (315)
Q Consensus 246 ~~~rVigV~~~g 257 (315)
.+++|..+.+..
T Consensus 181 ~gi~v~~i~pg~ 192 (256)
T PRK12745 181 EGIGVYEVRPGL 192 (256)
T ss_pred hCCEEEEEecCC
Confidence 468888888854
No 494
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.33 E-value=5.3e+02 Score=22.57 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=25.4
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEe
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFS 254 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~ 254 (315)
..+|.||+. +..++.|+..++++.+- ++.|+|++
T Consensus 175 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~ip~dv~iig~d 212 (269)
T cd06281 175 DRPTAIIAG--GTQVLVGVLRALREAGLRIPRDLSVISIG 212 (269)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCCcceeEEEec
Confidence 468999864 55667799999988763 56788886
No 495
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=22.29 E-value=2.5e+02 Score=26.06 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=33.3
Q ss_pred CEEEecCCchhHHHHHHHHHHHHcCCeEEEEecCCCcccCCCCCccchHHHHHhCCCEEEE
Q 021235 96 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 156 (315)
Q Consensus 96 ~~vVt~g~s~GNhg~alA~aa~~lGl~~~ivvp~~~~~~~~~p~~~~n~~~~r~~GAeV~~ 156 (315)
++|+.. +. |..|.++...|+.+|.+.++++... ..+..+++.+|++.++
T Consensus 165 ~~vlV~-~~-g~vg~~~~~la~~~G~~~v~~~~~~----------~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 165 EDVLIT-GA-GPIGIMAAAVAKHVGARHVVITDVN----------EYRLELARKMGATRAV 213 (341)
T ss_pred CeEEEE-CC-CHHHHHHHHHHHHcCCCEEEEEcCC----------HHHHHHHHHhCCcEEe
Confidence 445444 33 7899999999999999655554322 1357778889997544
No 496
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.25 E-value=5.1e+02 Score=25.05 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=9.1
Q ss_pred CCCeEEEeCCchhhH
Q 021235 220 KFDDIVVACGSGGTI 234 (315)
Q Consensus 220 ~~D~ivv~vGtGGt~ 234 (315)
++| +|+++|+|..+
T Consensus 79 ~~D-~IIaiGGGS~i 92 (386)
T cd08191 79 GPD-VIIGLGGGSCI 92 (386)
T ss_pred CCC-EEEEeCCchHH
Confidence 455 57788887653
No 497
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.21 E-value=5.3e+02 Score=22.45 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=44.6
Q ss_pred CCCCeEEEeCCchhhHHHHHHHHhcCCC----CCeEEEEeccCCchhhHHHHHHHHhhhcCCCCCCCeEEecCCcccchH
Q 021235 219 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTF 294 (315)
Q Consensus 219 ~~~D~ivv~vGtGGt~aGl~~~~k~~~~----~~rVigV~~~g~~~~~~~~i~~l~~g~~~~~~~~dvv~v~e~~~~~~~ 294 (315)
.++|+||+ +++..+.|+..++++.+. ++.|+|++-.....+ +.+++ ..+..+-.+.....
T Consensus 177 ~~~~ai~~--~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~~~~~~~-------~~~~l-------~~i~~~~~~~g~~a 240 (268)
T cd06273 177 PRPTAVIC--GNDVLALGALYEARRLGLSVPEDLSIVGFDDIDGSAE-------LEPAL-------TTVRVPAREIGRIA 240 (268)
T ss_pred CCCCEEEE--cChHHHHHHHHHHHHcCCCCCCceEEEecCChhHHhh-------cCCCc-------eeeeCCHHHHHHHH
Confidence 46899887 567778899999988653 566888774322111 11111 12444445666667
Q ss_pred HHHHHHHHhcCCC
Q 021235 295 KNILMNILMNGKQ 307 (315)
Q Consensus 295 ~~~~~~~~~~~~~ 307 (315)
.++|++.+-+++.
T Consensus 241 ~~~l~~~~~~~~~ 253 (268)
T cd06273 241 AEALLALLGGGTP 253 (268)
T ss_pred HHHHHHHhcCCCC
Confidence 7777777666543
No 498
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.16 E-value=6.5e+02 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEeCCchhhHHHHHHHHhcCCCCCeEEEEecc
Q 021235 203 EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 256 (315)
Q Consensus 203 t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~k~~~~~~rVigV~~~ 256 (315)
+...||.+.+.+ ..++.+|++|=|.++++.= .+++.. ++.|+||.+.
T Consensus 54 ~~~~~i~~~l~~----~~ik~lVIACNTASa~al~--~LR~~~-~iPVvGviPa 100 (269)
T COG0796 54 ERTLEIVDFLLE----RGIKALVIACNTASAVALE--DLREKF-DIPVVGVIPA 100 (269)
T ss_pred HHHHHHHHHHHH----cCCCEEEEecchHHHHHHH--HHHHhC-CCCEEEeccc
Confidence 345677777654 2499999999998887643 344433 7888888854
No 499
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=22.16 E-value=4.4e+02 Score=25.26 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHhCCCEEEEEcCCcccccChHHHHHHHHHHHHHhCCCcEEeCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 021235 145 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 224 (315)
Q Consensus 145 ~~~r~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n~~~~~G~~t~a~EI~~Q~~~~~~~~~~D~i 224 (315)
..++.+|-++.+|.+....+ ...+++.+.+.+.+-...+....+..+. ....|+.+++.+ .++| +
T Consensus 23 ~~l~~~g~~~livtd~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~ep~~------~~v~~~~~~~~~----~~~d-~ 87 (366)
T PRK09423 23 EYLKPLGKRALVIADEFVLG----IVGDRVEASLKEAGLTVVFEVFNGECSD------NEIDRLVAIAEE----NGCD-V 87 (366)
T ss_pred HHHHHcCCEEEEEEChhHHH----HHHHHHHHHHHhCCCeEEEEEeCCCCCH------HHHHHHHHHHHh----cCCC-E
Q ss_pred EEeCCchhhH
Q 021235 225 VVACGSGGTI 234 (315)
Q Consensus 225 vv~vGtGGt~ 234 (315)
|+++|+|..+
T Consensus 88 IIavGGGsv~ 97 (366)
T PRK09423 88 VIGIGGGKTL 97 (366)
T ss_pred EEEecChHHH
No 500
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=22.10 E-value=2.6e+02 Score=23.71 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCC--CEEEecCCchhHHHHHHHHHHHH-cCCeEEEEecCCCcccCCCCCccchHHHH-HhCCCEEEEEcC
Q 021235 84 EFLMADAVAQGA--DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVE-RLVGAHIELISK 159 (315)
Q Consensus 84 ~~ll~~a~~~G~--~~vVt~g~s~GNhg~alA~aa~~-lGl~~~ivvp~~~~~~~~~p~~~~n~~~~-r~~GAeV~~v~~ 159 (315)
...+.++...|. ..|+.||+ |++++.+|++ .|++|-++.+... ..+. +-..|+|+..+.
T Consensus 47 a~~va~~V~~g~~~~GIliCGt-----GiG~siaANK~~GIRAA~~~d~~~------------A~~ar~hNnaNVL~lG~ 109 (148)
T PRK05571 47 AKKVAEAVVAGEADRGILICGT-----GIGMSIAANKVKGIRAALCHDTYS------------AHLAREHNNANVLALGA 109 (148)
T ss_pred HHHHHHHHHcCCCCEEEEEcCC-----cHHHHHHHhcCCCeEEEEECCHHH------------HHHHHHhcCCcEEEECc
Confidence 344555555552 46777753 7888888888 8999999965432 2233 346889988875
Q ss_pred C
Q 021235 160 E 160 (315)
Q Consensus 160 ~ 160 (315)
.
T Consensus 110 r 110 (148)
T PRK05571 110 R 110 (148)
T ss_pred c
Confidence 3
Done!