Query 021236
Match_columns 315
No_of_seqs 219 out of 693
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1.1E-85 2.4E-90 602.3 19.1 218 27-247 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 2.8E-83 6.1E-88 586.2 18.3 216 28-248 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 5.3E-83 1.1E-87 586.9 17.6 214 28-248 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 2.4E-79 5.2E-84 558.9 8.8 212 32-248 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 8.1E-60 1.7E-64 412.6 14.2 155 28-247 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 9.1E-52 2E-56 359.9 13.7 149 28-248 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 8.7E-51 1.9E-55 354.4 14.1 152 28-246 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.8 0.00041 9E-09 61.4 12.4 36 111-146 72-110 (155)
9 cd09216 GH64-LPHase-like glyco 95.3 0.097 2.1E-06 52.1 9.3 111 27-147 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 91.9 0.5 1.1E-05 47.4 7.1 80 60-147 62-146 (369)
11 PF07172 GRP: Glycine rich pro 69.4 3.4 7.3E-05 33.9 2.0 28 1-28 1-28 (95)
12 cd09214 GH64-like glycosyl hyd 57.3 9 0.00019 37.8 2.8 31 115-147 125-155 (319)
13 PRK02710 plastocyanin; Provisi 53.6 34 0.00074 28.4 5.4 14 55-68 48-61 (119)
14 cd09214 GH64-like glycosyl hyd 51.1 7.3 0.00016 38.4 1.1 22 210-231 276-299 (319)
15 cd05468 pVHL von Hippel-Landau 47.1 28 0.0006 30.2 4.0 51 24-80 7-57 (141)
16 cd09220 GH64-GluB-like glycosi 46.9 9.4 0.0002 38.5 1.2 22 210-231 321-344 (369)
17 cd09216 GH64-LPHase-like glyco 40.5 14 0.00029 37.1 1.2 22 210-231 310-333 (353)
18 PHA03094 dUTPase; Provisional 37.5 32 0.00069 29.8 2.9 28 55-82 35-68 (144)
19 PF01847 VHL: von Hippel-Linda 35.7 31 0.00067 30.9 2.5 51 22-78 11-61 (156)
20 PF08194 DIM: DIM protein; In 31.0 62 0.0014 22.2 2.8 17 18-34 16-32 (36)
21 PRK09918 putative fimbrial cha 24.9 2.2E+02 0.0048 26.4 6.4 45 24-68 40-90 (230)
22 PF11142 DUF2917: Protein of u 24.8 73 0.0016 23.9 2.6 23 56-78 2-29 (63)
23 PF06282 DUF1036: Protein of u 24.2 1E+02 0.0023 25.7 3.7 41 25-66 3-44 (115)
24 PF05991 NYN_YacP: YacP-like N 24.1 25 0.00054 31.1 -0.1 10 133-142 2-11 (166)
25 PF09604 Potass_KdpF: F subuni 24.1 75 0.0016 20.1 2.1 21 294-314 2-22 (25)
26 PRK14759 potassium-transportin 24.0 75 0.0016 20.9 2.1 22 293-314 5-26 (29)
27 KOG4063 Major epididymal secre 20.2 84 0.0018 28.2 2.4 15 1-15 1-15 (158)
28 cd07557 trimeric_dUTPase Trime 20.1 1.2E+02 0.0026 23.4 3.1 27 55-81 13-45 (92)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1.1e-85 Score=602.26 Aligned_cols=218 Identities=62% Similarity=1.202 Sum_probs=208.7
Q ss_pred EEEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCC
Q 021236 27 SFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAG 106 (315)
Q Consensus 27 tfti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d~~G~~~C~TGDCgsg~l~C~g 106 (315)
+|||+|||+||||||+++++|++++..+||+|+||++++|++|++|+|||||||+|++|+.|+++|+||||+ |+|+|+|
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCg-g~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCG-GGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCC-CeeecCC
Confidence 599999999999999999999999989999999999999999999999999999999999999999999999 9999998
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCccccccch
Q 021236 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (315)
Q Consensus 107 ~g~~pPaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~C~Sa 186 (315)
.+++||+|||||||++.+++|||||||||||||||+|+|+++. +.|+..+|.+|||..||.|||+++++ |.+||||||
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~-~~C~~~~C~~din~~CP~~L~v~~~~-g~vv~C~Sa 157 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGS-GGCRTAGCVADLNAVCPAELQVKNSG-GRVVACKSA 157 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCC-CCCCCCcccCcccccCCHHHeeccCC-CcEeeecCH
Confidence 8889999999999998778999999999999999999998654 47999999999999999999998654 569999999
Q ss_pred hhhcCCCcccccCCCCCCCCCCCcchhhHHhhcCCCcccccCCCCCCceeecC-CCeEEEec
Q 021236 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFC 247 (315)
Q Consensus 187 C~a~~~~~yCC~G~~~~p~tC~pt~ys~~FK~~CP~AYsYayDD~tstftC~~-~~Y~ItFC 247 (315)
|++|++|||||+|+|++|++|+|+.||++||++||+||+|||||++|+|+|++ ++|+||||
T Consensus 158 C~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 158 CLAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HHhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999997 99999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=2.8e-83 Score=586.17 Aligned_cols=216 Identities=54% Similarity=1.065 Sum_probs=206.3
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCc-eeeeeecccccCCCCcccccCCCCCCCccccCC
Q 021236 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTHHQNQTFSCVTGDCGSQKLECAG 106 (315)
Q Consensus 28 fti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~Ws-GriWaRTgCs~d~~G~~~C~TGDCgsg~l~C~g 106 (315)
|||+|||+|||||||+++ |++++..+||+|+||+++++++|++|+ |||||||+|++|++|+++|+||||+ |+|+|++
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCg-G~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCG-GVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCC-CeeecCC
Confidence 799999999999999998 999888899999999999999999996 9999999999999999999999999 9999999
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCccccccch
Q 021236 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (315)
Q Consensus 107 ~g~~pPaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~C~Sa 186 (315)
.+++||+|||||||++.+++|||||||||||||||+|.|+++. +.|+..+|.+|||..||.|||++++ |.|||||||
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~-~~C~~~~C~~d~~~~CP~~L~v~~~--g~vv~C~Sa 155 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGS-GDCKGAGCTADLNAQCPAELQVPGG--GSVVACNSA 155 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCC-CCcCCCcCCCcccccCCHHHccccC--CcccccccH
Confidence 8889999999999998778999999999999999999998643 4799999999999999999999842 569999999
Q ss_pred hhhcCCCcccccCCCCCCCCCCCcchhhHHhhcCCCcccccCCCCCCceeecC-CCeEEEecC
Q 021236 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFCP 248 (315)
Q Consensus 187 C~a~~~~~yCC~G~~~~p~tC~pt~ys~~FK~~CP~AYsYayDD~tstftC~~-~~Y~ItFCP 248 (315)
|++|++|||||+|+|++|++|+|+.||++||++||+||+|||||++++|+|++ ++|+|+|||
T Consensus 156 C~~f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 156 CTVFGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred hhccCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998 999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=5.3e-83 Score=586.93 Aligned_cols=214 Identities=43% Similarity=0.900 Sum_probs=199.4
Q ss_pred EEEEeCCCCcccceeecCCCCC---CCCCCCceecCCCEEEEecCCCCc-eeeeeecccccC-CCCcccccCCCCCCCcc
Q 021236 28 FKMVNKCRRTVWPGLLSGANSP---PLPTTGFELKSGKSRTITIPKSWS-GRIWARTLCTHH-QNQTFSCVTGDCGSQKL 102 (315)
Q Consensus 28 fti~N~C~~tVWpgi~~~~g~~---~l~~~G~~L~pG~s~s~~vp~~Ws-GriWaRTgCs~d-~~G~~~C~TGDCgsg~l 102 (315)
|||+|||+|||||||++++|++ ++..+||+|+||++++|++|++|+ |||||||+|+|| ..|+++|+||||| |+|
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-GGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-cee
Confidence 7999999999999999999988 677899999999999999999997 999999999999 5699999999999 999
Q ss_pred ccCCCCCCCCcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCcccc
Q 021236 103 ECAGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVA 182 (315)
Q Consensus 103 ~C~g~g~~pPaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~ 182 (315)
+|++ ++.||+|||||||++. ++|||||||||||||||+|.|.. .|+.++|.+|||..||.|||++.+.+|.+||
T Consensus 80 ~C~~-~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~----~C~~~~C~~dln~~CP~~L~v~~~~~g~~va 153 (229)
T cd09219 80 TCEN-SDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI----TCPQPQCQVDLNVLCPALLRGPLDQKGVNLG 153 (229)
T ss_pred ecCC-CCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC----CCCCCcccCCCcccCCHHHccccCCCCccce
Confidence 9995 5689999999999976 78999999999999999999931 6999999999999999999998543467999
Q ss_pred ccchhhh-cCC--CcccccCCCCCCCCCCC--cchhhHHhhcCCCcccccCCCCC--CceeecC---CCeEEEecC
Q 021236 183 CKSACEA-FGD--PRYCCSEAYATPDTCFP--SVYSLFFKHVCPRAYSYAYDDKT--STYTCGS---ADYVIIFCP 248 (315)
Q Consensus 183 C~SaC~a-~~~--~~yCC~G~~~~p~tC~p--t~ys~~FK~~CP~AYsYayDD~t--stftC~~---~~Y~ItFCP 248 (315)
|||||++ |++ |||||+|+|++|++|+| ++||++||++||+||||||||++ |||||++ ++|+|||||
T Consensus 154 C~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 154 CISPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred ecCHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 9999999 655 99999999999999999 88999999999999999999999 6799996 899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=2.4e-79 Score=558.87 Aligned_cols=212 Identities=59% Similarity=1.179 Sum_probs=177.5
Q ss_pred eCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCCCCCCC
Q 021236 32 NKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAGGGAAP 111 (315)
Q Consensus 32 N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d~~G~~~C~TGDCgsg~l~C~g~g~~p 111 (315)
|||+||||||+++++|++++..+||+|+||+++++.+|++|+|||||||+|++|+.|+++|+||||+ |+++|++.++.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCg-g~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCG-GRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-ST-TBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCC-cccccccccCcc
Confidence 9999999999999999888888999999999999999999999999999999999999999999999 999999878899
Q ss_pred CcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCccccccchhhhcC
Q 021236 112 PATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSACEAFG 191 (315)
Q Consensus 112 PaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~C~SaC~a~~ 191 (315)
|+|||||+|++.+++|||||||||||||||+|+|.+ +..|+..+|.+|||..||.|||++..++ +|+|+|+|.+|+
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~--~~~C~~~~C~~di~~~CP~~l~v~~~~~--vv~C~SaC~~~~ 155 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG--GSNCRSPGCPADINSWCPSELQVKNSDG--VVGCKSACDAFN 155 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS--SSSSSSEEE-S-HHHHE-CCCEEETTSS--TTEE--HHHHH-
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCC--CCccccccCccccccccchhheeeccCc--eeeecccceecc
Confidence 999999999877899999999999999999999995 3589999999999999999999977653 999999999999
Q ss_pred CCcccccCCCCCCCCCCCcchhhHHhhcCCCcccccCCCCCCceeecC-CCeEEEecC
Q 021236 192 DPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFCP 248 (315)
Q Consensus 192 ~~~yCC~G~~~~p~tC~pt~ys~~FK~~CP~AYsYayDD~tstftC~~-~~Y~ItFCP 248 (315)
++||||+|+|++|++|+++.|+++||++||+||+|||||.+|+|+|++ ++|+|||||
T Consensus 156 ~~~~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 156 TDEYCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp SHHHHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred CCccccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999999999999999999999999999999998 999999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=8.1e-60 Score=412.58 Aligned_cols=155 Identities=51% Similarity=1.087 Sum_probs=142.3
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCceeeeeecccccCC-CCcccccCCCCCCCccccCC
Q 021236 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQ-NQTFSCVTGDCGSQKLECAG 106 (315)
Q Consensus 28 fti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d~-~G~~~C~TGDCgsg~l~C~g 106 (315)
|||+|||+|||||||++++|++ +..+||+|+||+++++.+|++|+|||||||+|++|+ .|+++|+||||+ |+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~g 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQG 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecCC
Confidence 7999999999999999999986 778999999999999999999999999999999998 799999999999 9999998
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCccccccch
Q 021236 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (315)
Q Consensus 107 ~g~~pPaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~C~Sa 186 (315)
++.||+|||||||++.+++|||||||||||||||+|.|++ +.|+..+|.+
T Consensus 79 -~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~---~~C~~~~C~~-------------------------- 128 (157)
T cd09215 79 -TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP---GECPTPICAA-------------------------- 128 (157)
T ss_pred -CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC---CCCCCCcccc--------------------------
Confidence 5579999999999987788999999999999999999964 2455433331
Q ss_pred hhhcCCCcccccCCCCCCCCCCCcchhhHHhhcCCCcccccCCCCCCceeecC-CCeEEEec
Q 021236 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFC 247 (315)
Q Consensus 187 C~a~~~~~yCC~G~~~~p~tC~pt~ys~~FK~~CP~AYsYayDD~tstftC~~-~~Y~ItFC 247 (315)
||+||||||||++|+|||++ ++|+||||
T Consensus 129 ---------------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ---------------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ---------------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999998 99999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=9.1e-52 Score=359.94 Aligned_cols=149 Identities=52% Similarity=1.015 Sum_probs=132.6
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCC-CceeeeeecccccCCCCcccccCCCCCCCccccCC
Q 021236 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKS-WSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAG 106 (315)
Q Consensus 28 fti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~-WsGriWaRTgCs~d~~G~~~C~TGDCgsg~l~C~g 106 (315)
|+|+|||+||||||+++. .+||+|+||+++++++|++ |+|||||||+|++|+.|+++|+||||+ |+++|++
T Consensus 1 ~~~~N~C~~tvWp~~~~~-------~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCg-g~l~C~~ 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPV-------GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCG-GVLSCTG 72 (151)
T ss_pred CEEEeCCCCcccceEecC-------CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCC-CeeecCC
Confidence 789999999999999862 4799999999999999997 999999999999999999999999999 9999995
Q ss_pred CCCCCCcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCccccccch
Q 021236 107 GGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSA 186 (315)
Q Consensus 107 ~g~~pPaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~C~Sa 186 (315)
++.||+||+||||+. +++||||||+||||||||.|.|++ ..|+..+|..
T Consensus 73 -~g~pp~Tl~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~---~~C~~~~C~~-------------------------- 121 (151)
T cd09217 73 -SGKPPATLAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTG---GGCHAIPCAA-------------------------- 121 (151)
T ss_pred -CCCCCceeEEEEecC-CCCccEEEEeecccccceEEecCC---CCCCCCcCCC--------------------------
Confidence 568999999999986 578999999999999999999963 1354333331
Q ss_pred hhhcCCCcccccCCCCCCCCCCCcchhhHHhhcCCCcccccCCCCCCceeecC-CCeEEEecC
Q 021236 187 CEAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIFCP 248 (315)
Q Consensus 187 C~a~~~~~yCC~G~~~~p~tC~pt~ys~~FK~~CP~AYsYayDD~tstftC~~-~~Y~ItFCP 248 (315)
. ||+||+|++|| .++|+|+. ++|+|||||
T Consensus 122 -----------------------d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 -----------------------N---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred -----------------------C---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 0 99999999995 79999998 999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=8.7e-51 Score=354.45 Aligned_cols=152 Identities=45% Similarity=0.746 Sum_probs=136.6
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCCC
Q 021236 28 FKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAGG 107 (315)
Q Consensus 28 fti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d~~G~~~C~TGDCgsg~l~C~g~ 107 (315)
|||+|||+|||||+|+++++++.+..+||+|+||++++|++|+.|+||||+||+|+++..|++.|+||||+ + +.|.+.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcg-g-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPG-V-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCC-C-cccCCC
Confidence 68999999999999999988887778999999999999999999999999999999998899999999998 6 788877
Q ss_pred CCCCCcceEEEEecCCCCcccccccccCccccceeeeeCCCCCCCCCCccccccccccCCccccccccCCCccccccchh
Q 021236 108 GAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKGGRGGGCGATGCLVDLNGACPAELKVAREGRGGSVACKSAC 187 (315)
Q Consensus 108 g~~pPaTLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~gs~~~C~~~~C~~dln~~CP~eL~v~~~~gg~vv~C~SaC 187 (315)
++.||+|||||||++.+++||||||+||||||||.|+|+++.+ .|+
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g-------------------------------~C~--- 124 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDG-------------------------------TCL--- 124 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCC-------------------------------Ccc---
Confidence 7899999999999976788999999999999999999964321 122
Q ss_pred hhcCCCcccccCCCCCCCCCCCcchhhHHhhcCCCcccccCCCCCCceeecC-CCeEEEe
Q 021236 188 EAFGDPRYCCSEAYATPDTCFPSVYSLFFKHVCPRAYSYAYDDKTSTYTCGS-ADYVIIF 246 (315)
Q Consensus 188 ~a~~~~~yCC~G~~~~p~tC~pt~ys~~FK~~CP~AYsYayDD~tstftC~~-~~Y~ItF 246 (315)
+.. |||+|||||+.++|+|++ .+|.|||
T Consensus 125 ---------------------~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 125 ---------------------STG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ---------------------ccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 111 999999999889999988 8999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.81 E-value=0.00041 Score=61.36 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=28.6
Q ss_pred CCcceEEEEecCCCCcccccccccCccc---cceeeeeC
Q 021236 111 PPATLAEFTLNGAGGLDFYDVSLVDGYN---LPMLVVPK 146 (315)
Q Consensus 111 pPaTLAEFtl~~~~g~d~YDVSlVdGyN---lPm~I~P~ 146 (315)
.|.|..||+|...+.+-|||+|-|.|+. =++.|.|.
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps 110 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPS 110 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecC
Confidence 5789999999876678999999999983 34556664
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.33 E-value=0.097 Score=52.06 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=66.0
Q ss_pred EEEEEeCCCC--cccceeecCC---CC------------CCCC----C--C--Ccee-cCCCEEEEecCCCCceeeeeec
Q 021236 27 SFKMVNKCRR--TVWPGLLSGA---NS------------PPLP----T--T--GFEL-KSGKSRTITIPKSWSGRIWART 80 (315)
Q Consensus 27 tfti~N~C~~--tVWpgi~~~~---g~------------~~l~----~--~--G~~L-~pG~s~s~~vp~~WsGriWaRT 80 (315)
.|+|+||=+. +||..|++.. |. +..+ . . ...| ++|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4789999877 8998887642 21 0000 0 1 1233 468889999998 999999543
Q ss_pred ccccCCCCcccccCCCCCCCccccCCCCCC-CCc----ceEEEEecCCCCcccccccccCccccceeeeeCC
Q 021236 81 LCTHHQNQTFSCVTGDCGSQKLECAGGGAA-PPA----TLAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKG 147 (315)
Q Consensus 81 gCs~d~~G~~~C~TGDCgsg~l~C~g~g~~-pPa----TLAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~ 147 (315)
+ ..=.|.=.. +.+-.+=.....+ |-. ..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 81 g----~~L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 G----SKLRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred C----CeeEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccceeeeccceEEEEec
Confidence 2 101122111 1122222111111 111 358999985 34589999999999999998765
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.85 E-value=0.5 Score=47.35 Aligned_cols=80 Identities=30% Similarity=0.419 Sum_probs=49.7
Q ss_pred CCCEEEEecCCCCceeeeeecccccCCCCcccccCCCCCCCccccCCCCC-CCCc----ceEEEEecCCCCccccccccc
Q 021236 60 SGKSRTITIPKSWSGRIWARTLCTHHQNQTFSCVTGDCGSQKLECAGGGA-APPA----TLAEFTLNGAGGLDFYDVSLV 134 (315)
Q Consensus 60 pG~s~s~~vp~~WsGriWaRTgCs~d~~G~~~C~TGDCgsg~l~C~g~g~-~pPa----TLAEFtl~~~~g~d~YDVSlV 134 (315)
+|++.++++|.-++||||=-.+ ..=.|. ...+ |.+-++=.-... -|-. ..+|||++. ..-|=++|.|
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g----~~L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~V 133 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVD----DKLTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISYV 133 (369)
T ss_pred CCCceeEEcccccceEEEEEcC----CeEEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccce
Confidence 5889999999989999995432 111121 1111 222232221111 1111 358999985 4468999999
Q ss_pred CccccceeeeeCC
Q 021236 135 DGYNLPMLVVPKG 147 (315)
Q Consensus 135 dGyNlPm~I~P~~ 147 (315)
|-|.+||.|+-.+
T Consensus 134 D~~~~P~~l~l~~ 146 (369)
T cd09220 134 DFVGLPLGLSLTT 146 (369)
T ss_pred eeeccCeEEEEEc
Confidence 9999999998654
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.38 E-value=3.4 Score=33.85 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=13.6
Q ss_pred CcchhhhHHHHHHHHHHHHhccccceEE
Q 021236 1 MDRRRLLSATFLSLLALCFISETEPASF 28 (315)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~a~a~tf 28 (315)
|.+|.++++.|++.++|+.++.++++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6666655544333233334445555544
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=57.26 E-value=9 Score=37.79 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=27.0
Q ss_pred eEEEEecCCCCcccccccccCccccceeeeeCC
Q 021236 115 LAEFTLNGAGGLDFYDVSLVDGYNLPMLVVPKG 147 (315)
Q Consensus 115 LAEFtl~~~~g~d~YDVSlVdGyNlPm~I~P~~ 147 (315)
.+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 125 f~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 58999985 56899999999999999998765
No 13
>PRK02710 plastocyanin; Provisional
Probab=53.59 E-value=34 Score=28.37 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=10.1
Q ss_pred CceecCCCEEEEec
Q 021236 55 GFELKSGKSRTITI 68 (315)
Q Consensus 55 G~~L~pG~s~s~~v 68 (315)
-.++++|++.++..
T Consensus 48 ~i~v~~Gd~V~~~N 61 (119)
T PRK02710 48 TLTIKAGDTVKWVN 61 (119)
T ss_pred EEEEcCCCEEEEEE
Confidence 46788888877643
No 14
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=51.11 E-value=7.3 Score=38.40 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.4
Q ss_pred cchhhHHhhcCC--CcccccCCCC
Q 021236 210 SVYSLFFKHVCP--RAYSYAYDDK 231 (315)
Q Consensus 210 t~ys~~FK~~CP--~AYsYayDD~ 231 (315)
+.|++++++... .||.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 458999999997 8999999994
No 15
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=47.11 E-value=28 Score=30.17 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=38.5
Q ss_pred cceEEEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCceeeeeec
Q 021236 24 EPASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWART 80 (315)
Q Consensus 24 ~a~tfti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~WsGriWaRT 80 (315)
....++|+|+++.+|-+-+....|..... ..|+||+.+.++ .+.|..|=-+
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~~r 57 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWLFR 57 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEEEE
Confidence 45789999999999999998877765432 379999997664 4567777543
No 16
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=46.93 E-value=9.4 Score=38.45 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=19.6
Q ss_pred cchhhHHhhcCC--CcccccCCCC
Q 021236 210 SVYSLFFKHVCP--RAYSYAYDDK 231 (315)
Q Consensus 210 t~ys~~FK~~CP--~AYsYayDD~ 231 (315)
+.|+++++..-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 469999999998 8899999995
No 17
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=40.47 E-value=14 Score=37.13 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.1
Q ss_pred cchhhHHhhcCC--CcccccCCCC
Q 021236 210 SVYSLFFKHVCP--RAYSYAYDDK 231 (315)
Q Consensus 210 t~ys~~FK~~CP--~AYsYayDD~ 231 (315)
+.|+++++..-. +||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 459999999987 7899999994
No 18
>PHA03094 dUTPase; Provisional
Probab=37.53 E-value=32 Score=29.83 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.9
Q ss_pred CceecCCCEEE------EecCCCCceeeeeeccc
Q 021236 55 GFELKSGKSRT------ITIPKSWSGRIWARTLC 82 (315)
Q Consensus 55 G~~L~pG~s~s------~~vp~~WsGriWaRTgC 82 (315)
.+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 47899999877 68999999999999654
No 19
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=35.73 E-value=31 Score=30.88 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=30.7
Q ss_pred cccceEEEEEeCCCCcccceeecCCCCCCCCCCCceecCCCEEEEecCCCCceeeee
Q 021236 22 ETEPASFKMVNKCRRTVWPGLLSGANSPPLPTTGFELKSGKSRTITIPKSWSGRIWA 78 (315)
Q Consensus 22 ~a~a~tfti~N~C~~tVWpgi~~~~g~~~l~~~G~~L~pG~s~s~~vp~~WsGriWa 78 (315)
+-....++|.|+++.+|-+-++.-.|.+... -.|+||+.+.++ .+.|..|=
T Consensus 11 S~~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~---TY~tHpW~ 61 (156)
T PF01847_consen 11 SREPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQN---TYVTHPWV 61 (156)
T ss_dssp --SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EEE
T ss_pred CCCceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEcc---cccCCcEE
Confidence 3445789999999999988887766665433 369999998886 35566664
No 20
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=31.03 E-value=62 Score=22.25 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=9.9
Q ss_pred HHhccccceEEEEEeCC
Q 021236 18 CFISETEPASFKMVNKC 34 (315)
Q Consensus 18 ~~~~~a~a~tfti~N~C 34 (315)
+.+.-+.+-+++|.=+|
T Consensus 16 ~~a~~~~pG~ViING~C 32 (36)
T PF08194_consen 16 AAAVPATPGNVIINGKC 32 (36)
T ss_pred HhcccCCCCeEEECcee
Confidence 33333557777776665
No 21
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=24.90 E-value=2.2e+02 Score=26.41 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=24.6
Q ss_pred cceEEEEEeCCCCccccee--ecCCCC--CCC--CCCCceecCCCEEEEec
Q 021236 24 EPASFKMVNKCRRTVWPGL--LSGANS--PPL--PTTGFELKSGKSRTITI 68 (315)
Q Consensus 24 ~a~tfti~N~C~~tVWpgi--~~~~g~--~~l--~~~G~~L~pG~s~s~~v 68 (315)
.+.+|+|.|+=..++-.-. ...... .++ .+-=|+|+||++..+.+
T Consensus 40 ~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRi 90 (230)
T PRK09918 40 GEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRF 90 (230)
T ss_pred CeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence 4578999998876522211 111111 111 11237899999887754
No 22
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=24.80 E-value=73 Score=23.93 Aligned_cols=23 Identities=35% Similarity=0.757 Sum_probs=18.1
Q ss_pred ceecCCCEEEEecCCCC-----ceeeee
Q 021236 56 FELKSGKSRTITIPKSW-----SGRIWA 78 (315)
Q Consensus 56 ~~L~pG~s~s~~vp~~W-----sGriWa 78 (315)
|+|+||+..++....+. +|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 68889999888887764 488885
No 23
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.24 E-value=1e+02 Score=25.73 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=30.1
Q ss_pred ceEEEEEeCCCCcccceeecCCCCCCCCCCCc-eecCCCEEEE
Q 021236 25 PASFKMVNKCRRTVWPGLLSGANSPPLPTTGF-ELKSGKSRTI 66 (315)
Q Consensus 25 a~tfti~N~C~~tVWpgi~~~~g~~~l~~~G~-~L~pG~s~s~ 66 (315)
.+-|+|-|+-++.|+.+|--..+. .-..-|| .|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~-~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGG-GWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCC-CcEEeeeEEeCCCceEEe
Confidence 456899999999999999654433 2223454 8899988776
No 24
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=24.15 E-value=25 Score=31.08 Aligned_cols=10 Identities=60% Similarity=0.962 Sum_probs=7.5
Q ss_pred ccCcccccee
Q 021236 133 LVDGYNLPML 142 (315)
Q Consensus 133 lVdGyNlPm~ 142 (315)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899997543
No 25
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=24.13 E-value=75 Score=20.11 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHhccccc
Q 021236 294 FTACAASILTAIFLFWPLIFP 314 (315)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~ 314 (315)
.+.+++++++.++|+.-|+.|
T Consensus 2 ~l~~~v~~~L~~YL~~aLl~P 22 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFYALLRP 22 (25)
T ss_pred hHHHHHHHHHHHHHHHHHhCc
Confidence 356788899999999999887
No 26
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=24.00 E-value=75 Score=20.90 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHhccccc
Q 021236 293 HFTACAASILTAIFLFWPLIFP 314 (315)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~ 314 (315)
-.++|++++.+.+.|+.-|+-|
T Consensus 5 ~~l~~~va~~L~vYL~~ALlrP 26 (29)
T PRK14759 5 YSLAGAVSLGLLIYLTYALLRP 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 3678999999999999988876
No 27
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=20.19 E-value=84 Score=28.20 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=10.0
Q ss_pred CcchhhhHHHHHHHH
Q 021236 1 MDRRRLLSATFLSLL 15 (315)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (315)
||++++..+.+++|+
T Consensus 1 m~ms~~~~v~l~all 15 (158)
T KOG4063|consen 1 MMMSFLKTVILLALL 15 (158)
T ss_pred CchHHHHHHHHHHHH
Confidence 888888876555433
No 28
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=20.13 E-value=1.2e+02 Score=23.35 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=20.6
Q ss_pred CceecCCCEEE------EecCCCCceeeeeecc
Q 021236 55 GFELKSGKSRT------ITIPKSWSGRIWARTL 81 (315)
Q Consensus 55 G~~L~pG~s~s------~~vp~~WsGriWaRTg 81 (315)
.+.|.|+++.- +.+|.++.|.|++|.+
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs 45 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSS 45 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCch
Confidence 47778877544 4678899999999954
Done!