AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>021237
MLTGFHCNTLPFSCLPSRRSRTRTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRF
SKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGK
KFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQN
VTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVY
NQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFL
ASIIQSEGTVESFKV

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G29700 AT1G29700 AT1G29700	protein from Arabidopsis thaliana	8.6e-104
BLAST match view associations BLAST with BAS2092 BAS2092 BAS2092 Uncharacterized protein	protein from Bacillus anthracis	0.00047
BLAST match view associations BLAST with BA_2247 BA_2247 BA_2247 conserved hypothetical protein	protein from Bacillus anthracis str. Ames	0.00047

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021237
        (315 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2013723 - symbol:AT1G29700 "AT1G29700" species...  1028  8.6e-104  1
UNIPROTKB|Q81R12 - symbol:BAS2092 "Uncharacterized protei...   114  0.00047   1
TIGR_CMR|BA_2247 - symbol:BA_2247 "conserved hypothetical...   114  0.00047   1


>TAIR|locus:2013723 [details] [associations]
            symbol:AT1G29700 "AT1G29700" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
            biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC068667
            eggNOG:COG2220 EMBL:AC079288 EMBL:AY042829 EMBL:AY072516
            IPI:IPI00538940 PIR:D86420 RefSeq:NP_564334.1 UniGene:At.24951
            ProteinModelPortal:Q9C535 STRING:Q9C535 PaxDb:Q9C535 PRIDE:Q9C535
            EnsemblPlants:AT1G29700.1 GeneID:839847 KEGG:ath:AT1G29700
            TAIR:At1g29700 HOGENOM:HOG000232903 InParanoid:Q9C535 OMA:LYYEPHG
            PhylomeDB:Q9C535 ProtClustDB:CLSN2688084 Genevestigator:Q9C535
            Uniprot:Q9C535
        Length = 350

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 201/315 (63%), Positives = 241/315 (76%)

Query:     6 HCNTLPFSCLPXXXXXXXXXDIILSALSKTPRFTSACRS-SVPIHPTAFNFPTRRFSKVV 64
             H N+LP S                   S TP   S  RS S+ + P        R   VV
Sbjct:    16 HANSLPLSINTKSRVLSASA---FPLFSSTPHLPS--RSLSIRLSPNV-----SRSLTVV 65

Query:    65 SALVSEENAV-----ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAG 119
             S+++SE+ A       TD FKLTYLEGNSWLW+  G+K+LVDPILVGNLDFGIPWL+DA 
Sbjct:    66 SSVLSEDRATNVSGSGTDAFKLTYLEGNSWLWETAGLKILVDPILVGNLDFGIPWLYDAA 125

Query:   120 KKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQ 179
             K++LK+F+L DLP+VDCLLITQSLDDHCHL TL+PLS+ SP +KVIATPNAK LLDPLF 
Sbjct:   126 KRYLKAFKLDDLPEVDCLLITQSLDDHCHLNTLRPLSEKSPGIKVIATPNAKPLLDPLFS 185

Query:   180 NVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239
             NVTY+EPG S E+  RNGSK+RVKATAGPVLGPPWQRPENGYL+ S + Q++LYYEPHCV
Sbjct:   186 NVTYLEPGDSFELNARNGSKVRVKATAGPVLGPPWQRPENGYLLVSPEDQISLYYEPHCV 245

Query:   240 YNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGF 299
              N   L+ ER+DI+ITPVIKQLLP+FTLVSGQEDAV+LAKLL AKF+VPM+NG+L++KG 
Sbjct:   246 CNMELLKNERADIVITPVIKQLLPRFTLVSGQEDAVQLAKLLKAKFVVPMQNGELEAKGL 305

Query:   300 LASIIQSEGTVESFK 314
             LAS+++ EGT+ESFK
Sbjct:   306 LASLVKKEGTIESFK 320


>UNIPROTKB|Q81R12 [details] [associations]
            symbol:BAS2092 "Uncharacterized protein" species:1392
            "Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001279
            InterPro:IPR024884 PIRSF:PIRSF038896 SMART:SM00849 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
            GO:GO:0070290 HOGENOM:HOG000267495 RefSeq:NP_844638.1
            RefSeq:YP_018894.1 RefSeq:YP_028355.1 ProteinModelPortal:Q81R12
            DNASU:1087581 EnsemblBacteria:EBBACT00000008325
            EnsemblBacteria:EBBACT00000014254 EnsemblBacteria:EBBACT00000020202
            GeneID:1087581 GeneID:2814472 GeneID:2852520 KEGG:ban:BA_2247
            KEGG:bar:GBAA_2247 KEGG:bat:BAS2092 OMA:GIGAYKP
            ProtClustDB:CLSK873512 BioCyc:BANT260799:GJAJ-2160-MONOMER
            BioCyc:BANT261594:GJ7F-2236-MONOMER Uniprot:Q81R12
        Length = 324

 Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
 Identities = 57/245 (23%), Positives = 103/245 (42%)

Query:    53 FNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGI 112
             F+F   + S V  +   + N   T V   T++  +++L   +G+ +L DP+    L   +
Sbjct:    34 FSFLVEQ-SPVKQSAFLQNNVKKTTV---TWIGHSTFLIQTNGLNILTDPVWANKLKL-V 88

Query:   113 PWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKT 172
             P L + G        + +LP++D +L++    DH    TL+ L+     L ++     K 
Sbjct:    89 PRLTEPG------LSIKELPKIDIVLLSHGHYDHLDFSTLRQLN--DDVLYLVPIGLKKL 140

Query:   173 LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTL 232
                  F NV   +  +S+ I+  +   +  +      L         G+++ +   + T+
Sbjct:   141 FTRKKFNNVEEYKWWESTTIDNVSFHFVPAQHWTRRSLFDMNTSHWGGWIIKNDNMEETI 200

Query:   233 YYEPHCVYNQNFLE--KERS-DIIITPVIKQLLPKFTLVS--GQEDAVKLAKLLHAKFIV 287
             Y+     Y Q F E  K  S DI + P+       F  +S    E+AV+    LHA   +
Sbjct:   201 YFCGDSGYFQGFKEIGKRFSIDIALMPIGAYEPEWFMKISHVSPEEAVQAYLDLHATHFI 260

Query:   288 PMKNG 292
             PM  G
Sbjct:   261 PMHYG 265


>TIGR_CMR|BA_2247 [details] [associations]
            symbol:BA_2247 "conserved hypothetical protein"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001279 InterPro:IPR024884 PIRSF:PIRSF038896
            SMART:SM00849 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0008270 GO:GO:0070290
            HOGENOM:HOG000267495 RefSeq:NP_844638.1 RefSeq:YP_018894.1
            RefSeq:YP_028355.1 ProteinModelPortal:Q81R12 DNASU:1087581
            EnsemblBacteria:EBBACT00000008325 EnsemblBacteria:EBBACT00000014254
            EnsemblBacteria:EBBACT00000020202 GeneID:1087581 GeneID:2814472
            GeneID:2852520 KEGG:ban:BA_2247 KEGG:bar:GBAA_2247 KEGG:bat:BAS2092
            OMA:GIGAYKP ProtClustDB:CLSK873512
            BioCyc:BANT260799:GJAJ-2160-MONOMER
            BioCyc:BANT261594:GJ7F-2236-MONOMER Uniprot:Q81R12
        Length = 324

 Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
 Identities = 57/245 (23%), Positives = 103/245 (42%)

Query:    53 FNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGI 112
             F+F   + S V  +   + N   T V   T++  +++L   +G+ +L DP+    L   +
Sbjct:    34 FSFLVEQ-SPVKQSAFLQNNVKKTTV---TWIGHSTFLIQTNGLNILTDPVWANKLKL-V 88

Query:   113 PWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKT 172
             P L + G        + +LP++D +L++    DH    TL+ L+     L ++     K 
Sbjct:    89 PRLTEPG------LSIKELPKIDIVLLSHGHYDHLDFSTLRQLN--DDVLYLVPIGLKKL 140

Query:   173 LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTL 232
                  F NV   +  +S+ I+  +   +  +      L         G+++ +   + T+
Sbjct:   141 FTRKKFNNVEEYKWWESTTIDNVSFHFVPAQHWTRRSLFDMNTSHWGGWIIKNDNMEETI 200

Query:   233 YYEPHCVYNQNFLE--KERS-DIIITPVIKQLLPKFTLVS--GQEDAVKLAKLLHAKFIV 287
             Y+     Y Q F E  K  S DI + P+       F  +S    E+AV+    LHA   +
Sbjct:   201 YFCGDSGYFQGFKEIGKRFSIDIALMPIGAYEPEWFMKISHVSPEEAVQAYLDLHATHFI 260

Query:   288 PMKNG 292
             PM  G
Sbjct:   261 PMHYG 265


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      315       306   0.00099  115 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  215 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.38u 0.17s 24.55t   Elapsed:  00:00:01
  Total cpu time:  24.38u 0.17s 24.55t   Elapsed:  00:00:01
  Start:  Sat May 11 08:25:25 2013   End:  Sat May 11 08:25:26 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data