Query 021237
Match_columns 315
No_of_seqs 311 out of 2185
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3798 Predicted Zn-dependent 100.0 1E-41 2.2E-46 296.4 14.1 228 76-313 78-330 (343)
2 PRK11709 putative L-ascorbate 100.0 5.6E-35 1.2E-39 275.5 22.8 215 72-297 31-289 (355)
3 COG2220 Predicted Zn-dependent 100.0 2.9E-32 6.2E-37 248.0 21.5 201 75-297 3-219 (258)
4 PRK00685 metal-dependent hydro 100.0 4.9E-31 1.1E-35 235.1 21.2 187 79-296 1-198 (228)
5 PF13483 Lactamase_B_3: Beta-l 99.9 3.8E-27 8.3E-32 199.8 14.4 158 80-290 1-163 (163)
6 PF12706 Lactamase_B_2: Beta-l 99.8 1.1E-19 2.4E-24 157.2 12.3 147 130-291 26-194 (194)
7 PRK11244 phnP carbon-phosphoru 99.8 1.9E-18 4E-23 156.5 19.1 175 85-293 36-223 (250)
8 TIGR02651 RNase_Z ribonuclease 99.8 2.4E-18 5.2E-23 159.5 15.7 181 85-293 17-269 (299)
9 PRK02113 putative hydrolase; P 99.8 1.2E-17 2.7E-22 151.2 16.9 173 86-293 35-225 (252)
10 TIGR03307 PhnP phosphonate met 99.8 3E-17 6.5E-22 147.5 18.7 174 86-293 27-213 (238)
11 TIGR02649 true_RNase_BN ribonu 99.7 8.2E-17 1.8E-21 149.8 16.8 183 84-294 15-272 (303)
12 PRK00055 ribonuclease Z; Revie 99.7 1.2E-16 2.6E-21 145.5 12.1 189 79-294 2-236 (270)
13 PRK05184 pyrroloquinoline quin 99.7 8.5E-15 1.8E-19 136.2 19.0 193 85-293 38-271 (302)
14 PRK02126 ribonuclease Z; Provi 99.6 4.1E-14 9E-19 133.1 18.0 190 82-304 12-325 (334)
15 TIGR02108 PQQ_syn_pqqB coenzym 99.6 3.3E-14 7E-19 132.1 16.8 195 86-294 38-272 (302)
16 TIGR03675 arCOG00543 arCOG0054 99.6 1.7E-13 3.6E-18 138.6 19.5 192 76-289 172-409 (630)
17 TIGR00649 MG423 conserved hypo 99.6 1.3E-13 2.8E-18 134.1 16.9 191 84-292 12-227 (422)
18 PRK04286 hypothetical protein; 99.5 4.6E-13 1E-17 124.4 17.0 204 86-303 15-262 (298)
19 COG1234 ElaC Metal-dependent h 99.5 3.4E-13 7.4E-18 124.8 15.3 70 225-296 186-262 (292)
20 smart00849 Lactamase_B Metallo 99.5 1.6E-13 3.5E-18 116.6 10.6 169 82-290 2-183 (183)
21 COG0595 mRNA degradation ribon 99.4 9.6E-12 2.1E-16 123.2 15.9 195 77-289 7-233 (555)
22 PRK11921 metallo-beta-lactamas 99.4 2.3E-12 4.9E-17 124.3 10.4 196 86-308 33-243 (394)
23 COG1782 Predicted metal-depend 99.4 4.1E-11 8.8E-16 114.5 17.7 190 77-289 179-415 (637)
24 PLN02962 hydroxyacylglutathion 99.3 7.1E-12 1.5E-16 113.4 7.9 164 84-291 21-192 (251)
25 TIGR03413 GSH_gloB hydroxyacyl 99.3 4E-11 8.7E-16 108.6 11.3 157 87-295 11-169 (248)
26 COG1236 YSH1 Predicted exonucl 99.3 4.1E-10 9E-15 109.5 18.7 148 84-257 12-188 (427)
27 PLN02469 hydroxyacylglutathion 99.3 9.3E-11 2E-15 106.7 13.3 162 84-295 9-179 (258)
28 COG0426 FpaA Uncharacterized f 99.2 8E-12 1.7E-16 117.8 5.7 192 86-307 36-241 (388)
29 PF00753 Lactamase_B: Metallo- 99.2 4.1E-12 8.9E-17 107.7 3.3 180 83-290 3-194 (194)
30 PLN02398 hydroxyacylglutathion 99.2 1.3E-10 2.8E-15 108.9 12.8 160 86-295 87-249 (329)
31 PRK05452 anaerobic nitric oxid 99.2 1.2E-10 2.5E-15 114.9 13.0 194 87-305 36-244 (479)
32 PRK10241 hydroxyacylglutathion 99.1 2.6E-10 5.6E-15 103.5 10.5 155 87-294 13-169 (251)
33 TIGR02650 RNase_Z_T_toga ribon 99.1 1.2E-09 2.6E-14 99.4 13.9 168 131-305 38-258 (277)
34 COG2248 Predicted hydrolase (m 99.1 1.5E-09 3.3E-14 95.8 11.8 200 87-307 16-265 (304)
35 KOG1136 Predicted cleavage and 99.0 1.4E-08 3.1E-13 92.9 15.7 181 84-289 15-239 (501)
36 COG1237 Metal-dependent hydrol 99.0 2.9E-09 6.3E-14 94.9 10.4 194 88-304 24-244 (259)
37 COG1235 PhnP Metal-dependent h 99.0 4.1E-09 9E-14 96.5 11.3 157 132-298 61-242 (269)
38 TIGR00361 ComEC_Rec2 DNA inter 99.0 3E-08 6.6E-13 101.7 18.1 182 77-289 438-630 (662)
39 PRK11539 ComEC family competen 98.9 3.6E-08 7.7E-13 102.5 17.4 158 76-259 498-667 (755)
40 KOG0813 Glyoxylase [General fu 98.9 4.2E-09 9.1E-14 94.8 8.9 94 130-242 48-144 (265)
41 KOG1137 mRNA cleavage and poly 98.9 7.2E-09 1.6E-13 100.0 10.2 151 84-257 25-207 (668)
42 COG0491 GloB Zn-dependent hydr 98.8 1.3E-08 2.9E-13 90.3 9.3 132 86-243 25-173 (252)
43 KOG2121 Predicted metal-depend 98.8 1.7E-09 3.7E-14 107.7 3.6 198 77-292 441-687 (746)
44 COG2333 ComEC Predicted hydrol 98.8 2.6E-07 5.7E-12 85.2 16.5 143 79-241 44-194 (293)
45 KOG1135 mRNA cleavage and poly 98.3 5.9E-06 1.3E-10 82.1 11.8 150 86-256 15-197 (764)
46 PF14597 Lactamase_B_5: Metall 98.0 6.3E-05 1.4E-09 63.9 9.3 169 84-304 21-196 (199)
47 KOG0814 Glyoxylase [General fu 97.9 9E-06 2E-10 68.4 3.7 153 94-282 31-216 (237)
48 KOG1361 Predicted hydrolase in 97.6 0.00033 7.2E-09 68.2 9.8 131 133-281 112-252 (481)
49 PF02112 PDEase_II: cAMP phosp 97.3 0.0041 8.9E-08 58.6 11.9 146 133-281 79-277 (335)
50 KOG4736 Uncharacterized conser 96.1 0.011 2.3E-07 54.1 5.5 168 82-301 92-265 (302)
51 COG2015 Alkyl sulfatase and re 93.8 0.074 1.6E-06 51.9 4.3 69 87-168 127-201 (655)
52 COG5212 PDE1 Low-affinity cAMP 93.7 0.21 4.6E-06 45.4 6.7 105 132-242 111-236 (356)
53 PF07521 RMMBL: RNA-metabolisi 80.0 2.3 5.1E-05 27.4 3.0 27 266-292 15-41 (43)
54 PF13691 Lactamase_B_4: tRNase 77.5 4.1 8.8E-05 28.8 3.8 46 86-147 12-61 (63)
55 KOG1137 mRNA cleavage and poly 61.2 35 0.00076 34.4 7.5 30 267-296 397-426 (668)
56 KOG3798 Predicted Zn-dependent 56.4 5 0.00011 36.4 0.8 62 90-155 98-160 (343)
57 KOG3592 Microtubule-associated 53.2 6.3 0.00014 40.6 1.0 47 87-147 49-95 (934)
58 TIGR00649 MG423 conserved hypo 46.6 19 0.00042 35.0 3.3 43 265-308 358-400 (422)
59 PF00478 IMPDH: IMP dehydrogen 37.5 25 0.00054 33.6 2.4 45 133-178 120-170 (352)
60 COG3669 Alpha-L-fucosidase [Ca 33.8 59 0.0013 31.5 4.2 29 268-296 53-83 (430)
61 TIGR01305 GMP_reduct_1 guanosi 29.9 62 0.0013 30.7 3.6 46 132-178 120-171 (343)
62 PRK05096 guanosine 5'-monophos 25.5 55 0.0012 31.1 2.4 46 132-178 121-172 (346)
63 COG1724 Predicted RNA binding 25.1 1.3E+02 0.0028 21.4 3.6 27 282-308 38-64 (66)
64 PF07522 DRMBL: DNA repair met 23.0 88 0.0019 24.2 2.9 24 266-289 82-105 (110)
65 COG4090 Uncharacterized protei 22.6 1.7E+02 0.0036 23.9 4.3 76 219-301 45-135 (154)
66 PRK13703 conjugal pilus assemb 22.0 1.8E+02 0.004 26.3 5.1 77 230-306 147-240 (248)
67 PF01050 MannoseP_isomer: Mann 21.8 2.2E+02 0.0048 23.6 5.2 21 133-157 11-31 (151)
68 PF09897 DUF2124: Uncharacteri 21.6 82 0.0018 26.1 2.5 52 249-303 80-132 (147)
69 PF00797 Acetyltransf_2: N-ace 21.5 1.1E+02 0.0023 27.0 3.5 25 83-107 85-109 (240)
No 1
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=100.00 E-value=1e-41 Score=296.36 Aligned_cols=228 Identities=21% Similarity=0.326 Sum_probs=189.8
Q ss_pred CCceEEEEEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCcccc-CCCCCCCCCCCCEEEEcCCCCCCCChhcHHH
Q 021237 76 TDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL-KSFQLSDLPQVDCLLITQSLDDHCHLKTLKP 154 (315)
Q Consensus 76 ~~~~~itwlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~-~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 154 (315)
..++--||+||||.++..+|.++++||+|+.++++ .. .+|+|.. |+..++++|++|.+++||+||||+|..++++
T Consensus 78 ~~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if--~s--~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~ 153 (343)
T KOG3798|consen 78 ESDLFATWLGHATVLVDLEGVKFVTDPVWADRASF--TS--FGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKK 153 (343)
T ss_pred cCcHHHhhhcceeEEEeccCcEEecchhhccchhh--cc--cCcccccCCchhhccCCCCceeccccccccccchHHHHh
Confidence 45567799999999999999999999999988763 22 2566644 4677899999999999999999999999999
Q ss_pred hhhhCCCceEEEcCChHH-HHhhcC-CceEEeCCCceEEecccCCCcEEEEEeecCCcC-CC-CCCC---ccEEEEEecC
Q 021237 155 LSKMSPNLKVIATPNAKT-LLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PP-WQRP---ENGYLVNSSQ 227 (315)
Q Consensus 155 l~~~~p~~~v~~~p~~~~-~l~~~~-~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g-~~-~~~~---~~g~~i~~~~ 227 (315)
+..+. .++.++|++.. ++.+.+ ..+.++.||++.++- +++..++|.++|++|++ |+ ++.| |+||.+...+
T Consensus 154 ~~~~~--~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~v-kn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~ 230 (343)
T KOG3798|consen 154 ITDRN--PQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFV-KNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGEN 230 (343)
T ss_pred hhccC--ccceeehhhhhheecCCCCCceeEeeccchhcee-cCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCC
Confidence 98764 45577888876 666655 568999999887763 34567999999999765 54 3433 9999999865
Q ss_pred CceeEEEcCCCCCcc-ccccc----cCCcEEEeccCCCcCCCccc---cCCHHHHHHHHHHcCCCEEEEeeccccccc--
Q 021237 228 GQLTLYYEPHCVYNQ-NFLEK----ERSDIIITPVIKQLLPKFTL---VSGQEDAVKLAKLLHAKFIVPMKNGDLDSK-- 297 (315)
Q Consensus 228 ~~~~i~~sGDt~~~~-~~~~~----~~~Dl~i~~~~g~~~p~~~~---h~~~eea~~~~~~l~~k~~ip~H~g~f~~~-- 297 (315)
.++||+|||||++ .|.+| |++|||.+|| |||.|+|.| |.+|+||+++++++++|.++.+|||||.++
T Consensus 231 --nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPi-GaYePrWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf~l~~E 307 (343)
T KOG3798|consen 231 --NRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPI-GAYEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTFHLGSE 307 (343)
T ss_pred --ceEEecCCCCcccHHHHHHHHhcCCcceeeccc-cccCchhhcccccCCHHHHHHHHHHHhhhcceeEeeeeeecccc
Confidence 4999999999998 77776 4999999998 999997766 999999999999999999999999999987
Q ss_pred ------chhHHHHhhcC-ccccc
Q 021237 298 ------GFLASIIQSEG-TVESF 313 (315)
Q Consensus 298 ------~~~~~~~~~~g-~~~~~ 313 (315)
..|+.++++.| -.++|
T Consensus 308 yyLEP~~KL~el~e~~glkd~~f 330 (343)
T KOG3798|consen 308 YYLEPRDKLKELMEAEGLKDTSF 330 (343)
T ss_pred eecCcHHHHHHHHHhcCCCCceE
Confidence 47888999977 44444
No 2
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=100.00 E-value=5.6e-35 Score=275.47 Aligned_cols=215 Identities=18% Similarity=0.242 Sum_probs=163.1
Q ss_pred cccCCCceEEEEEeCeEEEEEe-CCcEEEEccccCCCCCC--CCCc--------cccCCcc------ccC-CCCCCCCCC
Q 021237 72 NAVATDVFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLDF--GIPW--------LFDAGKK------FLK-SFQLSDLPQ 133 (315)
Q Consensus 72 ~~~~~~~~~itwlGhss~lI~~-~g~~ILiDP~~~g~~s~--p~~~--------~~~~~~~------~~~-~~~~~~lp~ 133 (315)
..++++.++++||||||++|++ +|.+||||++++ +++. ..++ ...|+++ ..| .+.++++++
T Consensus 31 ~~~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~-~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~ 109 (355)
T PRK11709 31 EVVPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCG-TGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIRE 109 (355)
T ss_pred cccCCCcEEEEEecceEEEEEcCCCcEEEEeecCC-CCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCC
Confidence 3446788999999999999998 689999997664 3320 0011 0112222 122 456678999
Q ss_pred CCEEEEcCCCCCCCChhcHHHhhhhC-CCceEEEcCCh-HHHHhhcC---CceEEeCCCceEEecccCCCcEEEEEeecC
Q 021237 134 VDCLLITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNA-KTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGP 208 (315)
Q Consensus 134 iD~VlISH~H~DHld~~tl~~l~~~~-p~~~v~~~p~~-~~~l~~~~---~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~ 208 (315)
||+|||||.|+||+|..+++.|.+.. +++++++ |.+ ..++.+++ .++++++||++++++ +++|+++|+.
T Consensus 110 IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~-p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig-----~v~It~lpa~ 183 (355)
T PRK11709 110 IDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIG-PQACVDLWIGWGVPKERCIVVKPGDVVKVK-----DIKIHALDSF 183 (355)
T ss_pred CCEEEECCCcccccChHHHHHHHhhcCCCcEEEE-cHHHHHHHHhcCCCcceEEEecCCCcEEEC-----CEEEEEEecc
Confidence 99999999999999999999987654 2455555 554 44777775 479999999999997 8999999983
Q ss_pred C-----------cC---CC---CCCCccEEEEEecCCceeEEEcCCCCCcccccccc---CCcEEEeccCCCcCC-Cccc
Q 021237 209 V-----------LG---PP---WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE---RSDIIITPVIKQLLP-KFTL 267 (315)
Q Consensus 209 ~-----------~g---~~---~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~---~~Dl~i~~~~g~~~p-~~~~ 267 (315)
+ +. +. ....++||+|+.++ .+|||+|||+|.+.|.+++ ++|++++++ |+ +| +...
T Consensus 184 h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~--~tvy~sGDT~~~~~~~~i~~~~~iDvall~i-G~-~p~~~~~ 259 (355)
T PRK11709 184 DRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPG--GNIYHSGDSHYSNYFAKHGNDHQIDVALGSY-GE-NPRGITD 259 (355)
T ss_pred ccccccccccccccccccccccCCcceEEEEEEeCC--eEEEEeCCCCccHHHHHHHhcCCCCEEEecC-CC-CCCCCcC
Confidence 2 11 11 11236899999865 5999999999998887653 799999998 66 45 4346
Q ss_pred cCCHHHHHHHHHHcCCCEEEEeeccccccc
Q 021237 268 VSGQEDAVKLAKLLHAKFIVPMKNGDLDSK 297 (315)
Q Consensus 268 h~~~eea~~~~~~l~~k~~ip~H~g~f~~~ 297 (315)
||+++||+++++++++++++|+||++|...
T Consensus 260 hm~p~ea~~~a~~l~ak~vIpiH~dtf~~~ 289 (355)
T PRK11709 260 KMTSIDILRMAESLNAKVVIPVHHDIWSNF 289 (355)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEChhhcccc
Confidence 999999999999999999999999999765
No 3
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=248.03 Aligned_cols=201 Identities=22% Similarity=0.295 Sum_probs=158.4
Q ss_pred CCCceEEEEEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHH
Q 021237 75 ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKP 154 (315)
Q Consensus 75 ~~~~~~itwlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 154 (315)
....|+|||+||||++|++++++|||||+++++.+ +..+.. ......++++|+|+|||+|+||+|..++..
T Consensus 3 ~~~~m~itwlGha~~lie~~~~~iliDP~~~~~~~-~~~~~~--------~~~~~~~~~~D~ilitH~H~DHl~~~~~~~ 73 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGGKRILIDPVLSGAPS-PSNFPG--------GLFEDLLPPIDYILITHDHYDHLDDETLIA 73 (258)
T ss_pred CCcCceEEEecceEEEEEECCEEEEECcccCCCCC-cccccC--------cCChhhcCCCCEEEEeCCCccccCHHHHHH
Confidence 35689999999999999999999999999998766 322110 123455678999999999999999999888
Q ss_pred hhhhCCCceEEEcCChHH-HHhhcC---CceEEeCCCceEEecccCCCcEEEEEeecCCcC-CCC-------CCCccEEE
Q 021237 155 LSKMSPNLKVIATPNAKT-LLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PPW-------QRPENGYL 222 (315)
Q Consensus 155 l~~~~p~~~v~~~p~~~~-~l~~~~---~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g-~~~-------~~~~~g~~ 222 (315)
+... ++++++.|.+.. .+.+++ .++.+++||+.++++ +++|+++++.++. +.. ...|+||+
T Consensus 74 ~~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~v 146 (258)
T COG2220 74 LRTN--KAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELG-----DLEITAVPAYHVSARHLPGRGIRPTGLWVGYV 146 (258)
T ss_pred HhcC--CCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEec-----CcEEEEEEeecccccccCCCCccccCCceEEE
Confidence 8742 477888899885 666775 469999999999997 8998888887432 222 13499999
Q ss_pred EEecCCceeEEEcCCCCCccccccc---cCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEeecc-ccccc
Q 021237 223 VNSSQGQLTLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNG-DLDSK 297 (315)
Q Consensus 223 i~~~~~~~~i~~sGDt~~~~~~~~~---~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H~g-~f~~~ 297 (315)
++..+ .++|++|||+| ..+... +++|++++|+ |.|.. ..+|++++++++.+.++++.++|+||+ ++...
T Consensus 147 i~~~g--~~iyh~GDt~~-~~~~~~~~~~~~DvallPi-g~~~~--~~~~~~~~~~~~~~~l~~~~viP~Hy~~~~~~~ 219 (258)
T COG2220 147 IETPG--GRVYHAGDTGY-LFLIIEELDGPVDVALLPI-GGYPN--ATMMPPEAAVAAAEVLRPKRVIPMHYGPTFPPI 219 (258)
T ss_pred EEeCC--ceEEeccCccH-HHHhhhhhcCCccEEEecc-CCCCC--CccCCHHHHHHHHHHhcCCeEEeecccccCccc
Confidence 99965 59999999999 322221 3689999998 76653 236789999999999999999999999 76654
No 4
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.98 E-value=4.9e-31 Score=235.12 Aligned_cols=187 Identities=22% Similarity=0.339 Sum_probs=147.8
Q ss_pred eEEEEEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhh
Q 021237 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM 158 (315)
Q Consensus 79 ~~itwlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~ 158 (315)
|+++|+||||++|+.+|.+|||||++++.... .+..+++ ++|+|||||.|+||++ .+..+..+
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~~~~~--------------~~~~~~~-~id~vliTH~H~DH~~--~~~~~~~~ 63 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITGNPLA--------------DLKPEDV-KVDYILLTHGHGDHLG--DTVEIAKR 63 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCCCCCC--------------CCChhcC-cccEEEeCCCCccccc--cHHHHHHh
Confidence 68999999999999999999999988753221 1223344 8999999999999985 34444433
Q ss_pred CCCceEEEcCChHHHHhhcC-CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCC-------CCCccEEEEEecCCce
Q 021237 159 SPNLKVIATPNAKTLLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW-------QRPENGYLVNSSQGQL 230 (315)
Q Consensus 159 ~p~~~v~~~p~~~~~l~~~~-~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~-------~~~~~g~~i~~~~~~~ 230 (315)
+++++++++....++++.+ .++.+++++++++++ +++|+++|+.|..... ..+++||+|+.++ .
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~--~ 135 (228)
T PRK00685 64 -TGATVIANAELANYLSEKGVEKTHPMNIGGTVEFD-----GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG--K 135 (228)
T ss_pred -CCCEEEEeHHHHHHHHhcCCCceeeccCCCcEEEC-----CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC--e
Confidence 3788888776666777664 488999999999996 8999999987643211 1236899999854 5
Q ss_pred eEEEcCCCCCccccccc---cCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEeecccccc
Q 021237 231 TLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDS 296 (315)
Q Consensus 231 ~i~~sGDt~~~~~~~~~---~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H~g~f~~ 296 (315)
+|||+|||+|.+++.++ .++|++++++ |. ..||+++||+++++.++||+++|+||++|..
T Consensus 136 ~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~-~~-----~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~ 198 (228)
T PRK00685 136 TIYHAGDTGLFSDMKLIGELHKPDVALLPI-GD-----NFTMGPEDAALAVELIKPKIVIPMHYNTFPL 198 (228)
T ss_pred EEEEecCccchhHHHHHHHhhCCCEEEEec-CC-----ccccCHHHHHHHHHhhCCCEEEEeccCCCcC
Confidence 99999999998876554 4799999998 42 2489999999999999999999999999865
No 5
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.95 E-value=3.8e-27 Score=199.83 Aligned_cols=158 Identities=27% Similarity=0.501 Sum_probs=107.4
Q ss_pred EEEEEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhC
Q 021237 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (315)
Q Consensus 80 ~itwlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~ 159 (315)
+|||+|||||+|+.+|++||+||+.+. .. .. ....++|+|+|||.|+||++..+++.+.+
T Consensus 1 ~It~lgha~~~ie~~g~~iliDP~~~~-~~----~~-------------~~~~~~D~IlisH~H~DH~~~~~l~~~~~-- 60 (163)
T PF13483_consen 1 KITWLGHASFLIETGGKRILIDPWFSS-VG----YA-------------PPPPKADAILISHSHPDHFDPETLKRLDR-- 60 (163)
T ss_dssp EEEEEETTEEEEEETTEEEEES--TTT-------T--------------TSS-B-SEEEESSSSTTT-CCCCCCCHHT--
T ss_pred CEEEEEeeEEEEEECCEEEEECCCCCc-cC----cc-------------cccCCCCEEEECCCccccCChhHhhhccc--
Confidence 689999999999999999999997641 11 00 01148999999999999999877766621
Q ss_pred CCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCC--CCCCccEEEEEecCCceeEEEcCC
Q 021237 160 PNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP--WQRPENGYLVNSSQGQLTLYYEPH 237 (315)
Q Consensus 160 p~~~v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~--~~~~~~g~~i~~~~~~~~i~~sGD 237 (315)
++..+.++++++++ +++|+.+++.+.... -....++|+++.+ +.+||+.||
T Consensus 61 --------------------~~~vv~~~~~~~~~-----~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~--g~~i~~~Gd 113 (163)
T PF13483_consen 61 --------------------DIHVVAPGGEYRFG-----GFKITAVPAYHDGPGGHPRGENVGYLIEVG--GVTIYHAGD 113 (163)
T ss_dssp --------------------SSEEE-TTEEEECT-----TEEEEEEEEEE-STGTS-TTCCEEEEEEET--TEEEEE-TT
T ss_pred --------------------ccEEEccceEEEEe-----eeEEEEEeeeccccCCCCcCCeEEEEEEeC--CCEEEEECC
Confidence 34445557788886 899999998743211 1123789999994 379999999
Q ss_pred CCCc---cccccccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 021237 238 CVYN---QNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (315)
Q Consensus 238 t~~~---~~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H 290 (315)
++.. +.+.+.+++|+++++++| ...|++++|+++++.++||+++|+|
T Consensus 114 ~~~~~~~~~~~~~~~vDvl~~p~~g------~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 114 TGFPPDDEQLKQLGKVDVLFLPVGG------PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp --S---HHHHHHH-S-SEEEEE--T------TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CccCCCHHHHhcccCCCEEEecCCC------CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 9984 334455699999999955 3356999999999999999999999
No 6
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.82 E-value=1.1e-19 Score=157.18 Aligned_cols=147 Identities=26% Similarity=0.391 Sum_probs=112.8
Q ss_pred CCCCCCEEEEcCCCCCC-CChhcHHHhhhhCCCceEEEcCChHHHHh--hcC----------CceEEeCCCceEEecccC
Q 021237 130 DLPQVDCLLITQSLDDH-CHLKTLKPLSKMSPNLKVIATPNAKTLLD--PLF----------QNVTYVEPGQSSEIEGRN 196 (315)
Q Consensus 130 ~lp~iD~VlISH~H~DH-ld~~tl~~l~~~~p~~~v~~~p~~~~~l~--~~~----------~~i~~l~~~~~~~l~~~~ 196 (315)
+++++|+|+|||.|+|| +++.++.......++ ++|+++...+.++ .++ ..+.++..++.++++
T Consensus 26 ~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (194)
T PF12706_consen 26 DLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIG--- 101 (194)
T ss_dssp SSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEET---
T ss_pred ccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEec---
Confidence 55699999999999999 776677666554434 8888887777776 332 357888888888886
Q ss_pred CCcEEEEEeecCCcCCCCCCCccE----EEEEecCCceeEEEcCCCCCccccccccCCcEEEeccCCCcC----C-Cccc
Q 021237 197 GSKLRVKATAGPVLGPPWQRPENG----YLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLL----P-KFTL 267 (315)
Q Consensus 197 g~~l~i~~~p~~~~g~~~~~~~~g----~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~i~~~~g~~~----p-~~~~ 267 (315)
+++|+++|+.|... ..+ |+|+.++ .+|+|+||+.+ .+.++.++|++++++...+. + ....
T Consensus 102 --~~~i~~~~~~H~~~-----~~~~~~g~~i~~~~--~~i~~~gD~~~--~~~~~~~~D~li~~~~~~~~~~~~~~~~~~ 170 (194)
T PF12706_consen 102 --DFRITPFPANHGPP-----SYGGNKGFVIEPDG--KKIFYSGDTNY--DFEELKNIDLLILECGYIDEEEEPPARGPG 170 (194)
T ss_dssp --TEEEEEEEEESSSC-----CEEECCEEEEEETT--EEEEEETSSSS--CHHHHTTBSEEEEEBCBSSGGHHCHHCCTT
T ss_pred --eEEEEEEecccccc-----ccccCceEEEecCC--cceEEeeccch--hhhhhccCCEEEEeCCCcchhhcccccCCC
Confidence 89999999975432 233 9999754 69999999999 35455689999999832211 1 2246
Q ss_pred cCCHHHHHHHHHHcCCCEEEEeec
Q 021237 268 VSGQEDAVKLAKLLHAKFIVPMKN 291 (315)
Q Consensus 268 h~~~eea~~~~~~l~~k~~ip~H~ 291 (315)
|+++++++++++++++++++++||
T Consensus 171 h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 171 HMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp SBBHHHHHHHHHHHTTSEEEEESB
T ss_pred CCCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999997
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.81 E-value=1.9e-18 Score=156.51 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=123.8
Q ss_pred eCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhh-hCCCce
Q 021237 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLK 163 (315)
Q Consensus 85 Ghss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~-~~p~~~ 163 (315)
..+|++|+.++.+||||| |... + .+. +.. .+||+|||||.|.||+ .++..+.. +.+.++
T Consensus 36 ~~~s~li~~~~~~iLiD~---G~~~-----~----~~~---~~~---~~i~~i~iTH~H~DHi--~gl~~l~~~~~~~i~ 95 (250)
T PRK11244 36 RPCSALIEFNGARTLIDA---GLPD-----L----AER---FPP---GSLQQILLTHYHMDHV--QGLFPLRWGVGDPIP 95 (250)
T ss_pred ceeEEEEEECCCEEEEEC---CChH-----H----hhc---CCc---ccCCEEEEccCchhhh--ccHHHHHhhcCCcee
Confidence 357899999999999999 4221 1 111 112 3789999999999995 56655532 223678
Q ss_pred EEEcCChHH---HHhhcC-Cce-EEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCC
Q 021237 164 VIATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHC 238 (315)
Q Consensus 164 v~~~p~~~~---~l~~~~-~~i-~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt 238 (315)
+|+++.... .++..+ .+. .++++++.++++ +++|+++|..|+.+ ..||+|+.++ .+|+|+|||
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~I~~~~~~H~~~-----s~g~~i~~~~--~~i~ysgDt 163 (250)
T PRK11244 96 VYGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDLG-----GLQVTPLPLNHSKL-----TFGYLLETAH--SRVAYLTDT 163 (250)
T ss_pred EEeCCchhhHHHHhcCccccccccccCCCCCeeEC-----CEEEEEEeeCCCcc-----eeEEEEecCC--eEEEEEcCC
Confidence 888665322 222111 122 457889999996 89999999876432 5799999754 699999999
Q ss_pred CCcc-ccccc---cCCcEEEeccCCCcCCC---ccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 021237 239 VYNQ-NFLEK---ERSDIIITPVIKQLLPK---FTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (315)
Q Consensus 239 ~~~~-~~~~~---~~~Dl~i~~~~g~~~p~---~~~h~~~eea~~~~~~l~~k~~ip~H~g~ 293 (315)
++.. .+.+. .++|++++++. +.+. ...|+++++++++++.+++++++++|++.
T Consensus 164 ~~~~~~~~~~~~~~~~Dlli~e~~--~~~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 164 VGLPEDTLKFLRNNQPDLLVLDCS--HPPQEDAPRNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred CCCCHHHHHHHhcCCCCEEEEeCc--CCCCCCCCCCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 9754 33332 47999999973 3221 23499999999999999999999999965
No 8
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.79 E-value=2.4e-18 Score=159.50 Aligned_cols=181 Identities=19% Similarity=0.175 Sum_probs=128.3
Q ss_pred eCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhh------h
Q 021237 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK------M 158 (315)
Q Consensus 85 Ghss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~------~ 158 (315)
+++|++|+.++.+||||| |.... +++..... ++.++|+|||||.|+||+ .++..+.. +
T Consensus 17 ~~~~~~v~~~~~~iLiD~---G~g~~----------~~l~~~~~-~~~~i~~IfiTH~H~DH~--~Gl~~l~~~~~~~~~ 80 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDC---GEGTQ----------RQMLRSGI-SPMKIDRIFITHLHGDHI--LGLPGLLSTMSFQGR 80 (299)
T ss_pred CCceEEEEECCeEEEEEC---CHHHH----------HHHHHcCC-CHHHCcEEEEECCchhhh--cChHHHHHhhccCCC
Confidence 468999999999999999 54321 11100111 234789999999999995 66655532 1
Q ss_pred CCCceEEEcCChHHHHhhc--------C--CceEEeCCCc-eEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecC
Q 021237 159 SPNLKVIATPNAKTLLDPL--------F--QNVTYVEPGQ-SSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQ 227 (315)
Q Consensus 159 ~p~~~v~~~p~~~~~l~~~--------~--~~i~~l~~~~-~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~ 227 (315)
...++||+++.....++.. . .++.++++++ .++.+ +++|+++|..|.. ...||.|+.++
T Consensus 81 ~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~H~~-----~~~gy~i~~~~ 150 (299)
T TIGR02651 81 KEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDD-----GFKVEAFPLDHSI-----PSLGYRFEEKD 150 (299)
T ss_pred CceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecC-----CEEEEEEEcCCCC-----ceEEEEEEECC
Confidence 1246677766655555432 1 2457788887 46665 8999999997643 25688887531
Q ss_pred ------------------------------------------------CceeEEEcCCCCCccccccc-cCCcEEEeccC
Q 021237 228 ------------------------------------------------GQLTLYYEPHCVYNQNFLEK-ERSDIIITPVI 258 (315)
Q Consensus 228 ------------------------------------------------~~~~i~~sGDt~~~~~~~~~-~~~Dl~i~~~~ 258 (315)
++.+|+|+|||++.+.+.+. .++|++++++.
T Consensus 151 ~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~~dlLi~E~~ 230 (299)
T TIGR02651 151 RPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNADLLIHEAT 230 (299)
T ss_pred CCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHHHcCCCEEEEECC
Confidence 13589999999998877665 48999999972
Q ss_pred CCcCC---C---ccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 021237 259 KQLLP---K---FTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (315)
Q Consensus 259 g~~~p---~---~~~h~~~eea~~~~~~l~~k~~ip~H~g~ 293 (315)
|.. . ...|++++||++++++.++++++.+|++.
T Consensus 231 --~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~ 269 (299)
T TIGR02651 231 --FLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISP 269 (299)
T ss_pred --CCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 332 1 13599999999999999999999999985
No 9
>PRK02113 putative hydrolase; Provisional
Probab=99.77 E-value=1.2e-17 Score=151.16 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=124.4
Q ss_pred CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhh--hCCCce
Q 021237 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK--MSPNLK 163 (315)
Q Consensus 86 hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~--~~p~~~ 163 (315)
.+|++|+.+|.+||||+ |.... .++.. .++.++|+|||||.|+||+ .++..+.. +...++
T Consensus 35 ~~s~li~~~~~~iLiD~---G~g~~----------~~l~~---~~~~~id~I~lTH~H~DH~--~gl~~l~~~~~~~~~~ 96 (252)
T PRK02113 35 RTSALVETEGARILIDC---GPDFR----------EQMLR---LPFGKIDAVLITHEHYDHV--GGLDDLRPFCRFGEVP 96 (252)
T ss_pred eeEEEEEECCeEEEEEC---CchHH----------HHHHh---cCccccCEEEECCCChhhh--CCHHHHHHhccCCCce
Confidence 58899999999999999 64321 11101 1345889999999999994 56554421 123678
Q ss_pred EEEcCChHHHHhhcC--------------CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCc
Q 021237 164 VIATPNAKTLLDPLF--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQ 229 (315)
Q Consensus 164 v~~~p~~~~~l~~~~--------------~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~ 229 (315)
||+++...+.+++.. .+++++++++.++++ +++|++++..|... ...||.+ +
T Consensus 97 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~i~~~~~~H~~~----~~~gy~i---~-- 162 (252)
T PRK02113 97 IYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN-----HTEVTPLRVMHGKL----PILGYRI---G-- 162 (252)
T ss_pred EEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-----CeEEEEEEecCCCc----cEEEEEe---C--
Confidence 888776666654321 246788899999986 89999999865321 2468877 2
Q ss_pred eeEEEcCCCCCcc-ccccc-cCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 021237 230 LTLYYEPHCVYNQ-NFLEK-ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (315)
Q Consensus 230 ~~i~~sGDt~~~~-~~~~~-~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H~g~ 293 (315)
++.|+||+++.+ ...+. .+.|++++++. +......|+++++++++++++++|+++.+|++.
T Consensus 163 -~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~--~~~~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~ 225 (252)
T PRK02113 163 -KMAYITDMLTMPEEEYEQLQGIDVLVMNAL--RIAPHPTHQSLEEALENIKRIGAKETYLIHMSH 225 (252)
T ss_pred -CEEEccCCCCCCHHHHHHhcCCCEEEEhhh--cCCCCCCcCCHHHHHHHHHHhCCCEEEEEcccc
Confidence 699999998643 33332 48999999862 222233599999999999999999999999975
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.77 E-value=3e-17 Score=147.51 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=122.4
Q ss_pred CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhh-CCCceE
Q 021237 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLKV 164 (315)
Q Consensus 86 hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~-~p~~~v 164 (315)
.+|++|+.+|.+||||| |... + .+. +. ..+||+|||||.|+||+ .++..+... ..+++|
T Consensus 27 ~~s~~i~~~~~~iliD~---G~~~-----~----~~~---~~---~~~id~i~iTH~H~DHi--~gl~~l~~~~~~~~~v 86 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDA---GLTD-----L----AER---FP---PGSLQAILLTHYHMDHV--QGLFPLRWGVGEPIPV 86 (238)
T ss_pred ceEEEEEECCcEEEEEC---CChh-----H----hhc---cC---ccCCCEEEEecCchhhh--cchHHHHHhcCCceeE
Confidence 46789999999999999 4221 1 111 11 23789999999999995 555444322 236788
Q ss_pred EEcCChHH---HHhhcC-Cce-EEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCC
Q 021237 165 IATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (315)
Q Consensus 165 ~~~p~~~~---~l~~~~-~~i-~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~ 239 (315)
|+++.... .++..+ .++ .++.+++.++++ +++|+++|..|..+ ..||+|+.++ .+++|+||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~H~~~-----~~g~~i~~~~--~~i~y~gDt~ 154 (238)
T TIGR03307 87 YGPPDEEGCDDLFKHPGILDFSKPLEAFEPFDLG-----GLRVTPLPLVHSKL-----TFGYLLETDG--QRVAYLTDTA 154 (238)
T ss_pred EeCchHhhHHHHhcCcccccccccccCCceEEEC-----CEEEEEEecCCCCc-----ceEEEEecCC--cEEEEEecCC
Confidence 88665422 222111 122 347788889986 89999999976532 5799998754 5999999998
Q ss_pred Ccc-ccccc---cCCcEEEeccCCCcCC---CccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 021237 240 YNQ-NFLEK---ERSDIIITPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (315)
Q Consensus 240 ~~~-~~~~~---~~~Dl~i~~~~g~~~p---~~~~h~~~eea~~~~~~l~~k~~ip~H~g~ 293 (315)
+.. .+.+. .++|++++++. +.+ ....|+++++++++++.+++++++++|++.
T Consensus 155 ~~~~~~~~~~~~~~~D~li~e~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil~H~~~ 213 (238)
T TIGR03307 155 GLPPDTEAFLKNHPLDVLILDCS--HPPQSDAPRNHNDLTRALAINEQLRPKQVILTHISH 213 (238)
T ss_pred CCCHHHHHHHhcCCCCEEEEeCC--cCccccCCCCcCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 754 33332 37999999973 322 123599999999999999999999999975
No 11
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.74 E-value=8.2e-17 Score=149.82 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=127.4
Q ss_pred EeCeEEEEEeC----CcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhh--
Q 021237 84 LEGNSWLWDLD----GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-- 157 (315)
Q Consensus 84 lGhss~lI~~~----g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~-- 157 (315)
-+.+|++|+.+ +.++|||| |.... +++....+ ++.+||+|+|||.|+||+ .++..|..
T Consensus 15 r~~s~~lv~~~~~~~~~~iLiD~---G~g~~----------~~l~~~~i-~~~~id~IfiTH~H~DHi--~Gl~~ll~~~ 78 (303)
T TIGR02649 15 RNVTAILLNLQHPTQSGLWLFDC---GEGTQ----------HQLLHTAF-NPGKLDKIFISHLHGDHL--FGLPGLLCSR 78 (303)
T ss_pred CCccEEEEEccCCCCCCEEEEEC---CccHH----------HHHHHhCC-CHHHCcEEEEeCCChhhc--CCHHHHHHHH
Confidence 34689999974 37899999 64431 11111111 234789999999999995 66655421
Q ss_pred ----hCCCceEEEcCChHHHHhhc---------C-CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEE
Q 021237 158 ----MSPNLKVIATPNAKTLLDPL---------F-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLV 223 (315)
Q Consensus 158 ----~~p~~~v~~~p~~~~~l~~~---------~-~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i 223 (315)
+...++||+++...+.++.. + .++.+++.++.++.+ +++|+++|..|.. ...||.|
T Consensus 79 ~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~v~~~~~~H~~-----~~~gy~i 148 (303)
T TIGR02649 79 SMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDG-----LRKVTAYPLEHPL-----ECYGYRI 148 (303)
T ss_pred HhcCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecC-----CeEEEEEEccCcc-----ceEEEEE
Confidence 11246788776655555432 1 245677777766654 7999999986542 2578888
Q ss_pred EecC------------------------------------------------CceeEEEcCCCCCccccccc-cCCcEEE
Q 021237 224 NSSQ------------------------------------------------GQLTLYYEPHCVYNQNFLEK-ERSDIII 254 (315)
Q Consensus 224 ~~~~------------------------------------------------~~~~i~~sGDt~~~~~~~~~-~~~Dl~i 254 (315)
+..+ ++.+|.|+|||++.+.+.+. .+.|+++
T Consensus 149 ~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~adlLi 228 (303)
T TIGR02649 149 EEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMV 228 (303)
T ss_pred eccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHHHHhcCCCEEE
Confidence 7532 24689999999998776654 4999999
Q ss_pred eccCCCcCC--C----ccccCCHHHHHHHHHHcCCCEEEEeecccc
Q 021237 255 TPVIKQLLP--K----FTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 294 (315)
Q Consensus 255 ~~~~g~~~p--~----~~~h~~~eea~~~~~~l~~k~~ip~H~g~f 294 (315)
+++ .|.. . ...|++++||+++++++++++++.+|++.-
T Consensus 229 ~Ea--t~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~ 272 (303)
T TIGR02649 229 HEA--TLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSR 272 (303)
T ss_pred Eec--cCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccc
Confidence 997 2432 1 124999999999999999999999999864
No 12
>PRK00055 ribonuclease Z; Reviewed
Probab=99.70 E-value=1.2e-16 Score=145.49 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=114.6
Q ss_pred eEEEEEe-----------CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCcccc--CCCCCCCCCCCCEEEEcCCCCC
Q 021237 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL--KSFQLSDLPQVDCLLITQSLDD 145 (315)
Q Consensus 79 ~~itwlG-----------hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~--~~~~~~~lp~iD~VlISH~H~D 145 (315)
|+|+.+| .+|++|+.++.+||||| |.... +++ ..+. +.++|+|+|||.|.|
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~---G~g~~----------~~l~~~~~~---~~~i~~i~lTH~H~D 65 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDC---GEGTQ----------RQLLKTGIK---PRKIDKIFITHLHGD 65 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEEC---CHHHH----------HHHHHcCCC---HHHCCEEEEeCCCch
Confidence 6777777 78999999999999999 54321 111 1222 237899999999999
Q ss_pred CCChhcHHHhhh------hCCCceEEEcCChHHHHhhc---C----CceEEeCCCceEE--------ec-cc----CCCc
Q 021237 146 HCHLKTLKPLSK------MSPNLKVIATPNAKTLLDPL---F----QNVTYVEPGQSSE--------IE-GR----NGSK 199 (315)
Q Consensus 146 Hld~~tl~~l~~------~~p~~~v~~~p~~~~~l~~~---~----~~i~~l~~~~~~~--------l~-~~----~g~~ 199 (315)
| ..+|..|.. +...++||+++.....++.. . ..+.+-+....+. +. +. -..+
T Consensus 66 H--i~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (270)
T PRK00055 66 H--IFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRG 143 (270)
T ss_pred h--hCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCC
Confidence 9 577765542 12246688766655555431 0 0111100000000 00 00 0001
Q ss_pred EEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCccccccc-cCCcEEEeccCCCcCC-C-----ccccCCHH
Q 021237 200 LRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEK-ERSDIIITPVIKQLLP-K-----FTLVSGQE 272 (315)
Q Consensus 200 l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~-~~~Dl~i~~~~g~~~p-~-----~~~h~~~e 272 (315)
.++........ ....+|.++.++ .+|+|+|||++.+.+.+. .++|++++++ . |.. . ...|++++
T Consensus 144 ~~~~~~~~~~i-----~~~~~~~~~~~g--~~~~y~~Dt~~~~~~~~~~~~~d~li~E~-~-~~~~~~~~~~~~~H~~~~ 214 (270)
T PRK00055 144 EDVTLEDGRII-----NPADVLGPPRKG--RKVAYCGDTRPCEALVELAKGADLLVHEA-T-FGDEDEELAKEYGHSTAR 214 (270)
T ss_pred CeEEeCCCcEE-----eHHHeeccCCCC--cEEEEeCCCCCcHHHHHHhCCCCEEEEec-c-CCcchhhHHhhcCCCCHH
Confidence 11111000000 013467776643 589999999998877654 4899999997 2 322 1 13499999
Q ss_pred HHHHHHHHcCCCEEEEeecccc
Q 021237 273 DAVKLAKLLHAKFIVPMKNGDL 294 (315)
Q Consensus 273 ea~~~~~~l~~k~~ip~H~g~f 294 (315)
++++++++++++.++++|++.-
T Consensus 215 ~a~~~~~~~~~~~~vl~H~~~~ 236 (270)
T PRK00055 215 QAAEIAKEAGVKRLILTHFSPR 236 (270)
T ss_pred HHHHHHHHcCCCEEEEEeeccc
Confidence 9999999999999999999753
No 13
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.65 E-value=8.5e-15 Score=136.20 Aligned_cols=193 Identities=16% Similarity=0.112 Sum_probs=124.1
Q ss_pred eCeEEEEEeCCc-EEEEccccCCCCCCCCCccccCCccccCCCCCC---CCCCCCEEEEcCCCCCCCChhcHHHhhhhCC
Q 021237 85 EGNSWLWDLDGV-KVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLS---DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (315)
Q Consensus 85 Ghss~lI~~~g~-~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~---~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (315)
..+|++|+.+|. +||||+ |+... .. + .+...+.+. ++.++|+|||||.|+|| +.+|..|... .
T Consensus 38 ~~ss~li~~~g~~~iLiD~---G~g~~-~q-l-----~~~~~~~~~~g~~~~~ldav~lTH~H~DH--i~Gl~~l~~~-~ 104 (302)
T PRK05184 38 TQSSIAVSADGEDWVLLNA---SPDIR-QQ-I-----QATPALQPARGLRDTPIAAVVLTDGQIDH--TTGLLTLREG-Q 104 (302)
T ss_pred cccEEEEEcCCCEEEEEEC---ChhHH-HH-H-----HhchhcCccccCCcccccEEEEeCCchhh--hhChHhhccC-C
Confidence 368899987664 699999 65431 10 0 011011111 23478999999999999 6788887654 3
Q ss_pred CceEEEcCChHHHHhhc---C--------CceEEeCCCceEEecccCCCcEEEEEeecCCcCCC--------CCCCccEE
Q 021237 161 NLKVIATPNAKTLLDPL---F--------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP--------WQRPENGY 221 (315)
Q Consensus 161 ~~~v~~~p~~~~~l~~~---~--------~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~--------~~~~~~g~ 221 (315)
.++||+++...+.+++. + .+++++..++.++++. .++++|+++|..|.-+. ......||
T Consensus 105 ~l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~--~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gy 182 (302)
T PRK05184 105 PFPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPG--LPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGL 182 (302)
T ss_pred CeEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecC--CCCcEEEEEEcCCCCCcccccccCCCCCCeEEE
Confidence 78899887776666543 1 1345677777777730 13799999998643111 11236799
Q ss_pred EEEecCCceeEEEcCCC-CCccccccc-cCCcEEEeccCCCcCC-------------CccccCCH---HHHHHHHHHcCC
Q 021237 222 LVNSSQGQLTLYYEPHC-VYNQNFLEK-ERSDIIITPVIKQLLP-------------KFTLVSGQ---EDAVKLAKLLHA 283 (315)
Q Consensus 222 ~i~~~~~~~~i~~sGDt-~~~~~~~~~-~~~Dl~i~~~~g~~~p-------------~~~~h~~~---eea~~~~~~l~~ 283 (315)
.|+...++++++|++|+ .+.+.+.+. .+.|++++++ .-|.. ....||+. .++++.++..++
T Consensus 183 ri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da-~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~ 261 (302)
T PRK05184 183 RIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDG-TLWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPI 261 (302)
T ss_pred EEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeC-CCCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCC
Confidence 99621133578888665 666665543 4899999986 22221 11247774 457778888889
Q ss_pred CEEEEeeccc
Q 021237 284 KFIVPMKNGD 293 (315)
Q Consensus 284 k~~ip~H~g~ 293 (315)
++++.+|...
T Consensus 262 k~l~ltHl~h 271 (302)
T PRK05184 262 ARKILIHINN 271 (302)
T ss_pred CcEEEEEcCC
Confidence 9999999973
No 14
>PRK02126 ribonuclease Z; Provisional
Probab=99.60 E-value=4.1e-14 Score=133.12 Aligned_cols=190 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred EEEeCeEEEEEe--CCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhh-
Q 021237 82 TYLEGNSWLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM- 158 (315)
Q Consensus 82 twlGhss~lI~~--~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~- 158 (315)
.-+..||++|.. +|.++|||| |. . .+ + ...++.+||+|||||.|+||+ .++..|...
T Consensus 12 g~~~dn~~~l~~~~~~~~iLiD~---G~-~----------~~-l---~~~~~~~i~~I~iTH~H~DHi--~Gl~~l~~~~ 71 (334)
T PRK02126 12 GPFDDPGLYVDFLFERRALLFDL---GD-L----------HH-L---PPRELLRISHIFVSHTHMDHF--IGFDRLLRHC 71 (334)
T ss_pred CCCCCcEEEEEECCCCeEEEEcC---CC-H----------HH-H---hhcCCCccCEEEEcCCChhHh--CcHHHHHHHh
Confidence 345678999886 489999999 64 1 01 1 112455899999999999994 666666432
Q ss_pred ---CCCceEEEcCChHHHHhhcC--------------CceEEeC--C--------------------------CceEEec
Q 021237 159 ---SPNLKVIATPNAKTLLDPLF--------------QNVTYVE--P--------------------------GQSSEIE 193 (315)
Q Consensus 159 ---~p~~~v~~~p~~~~~l~~~~--------------~~i~~l~--~--------------------------~~~~~l~ 193 (315)
.+.+++|+++...+.++... ..+..++ . +..++.
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE- 150 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC-
Confidence 23578888777665554321 1122121 1 111222
Q ss_pred ccCCCcEEEEEeecCCcCCCCCCCccEEEEEec-----------------------------------------------
Q 021237 194 GRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS----------------------------------------------- 226 (315)
Q Consensus 194 ~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~----------------------------------------------- 226 (315)
++++|+++|..|.-+ ..||.|+.+
T Consensus 151 ----~~~~V~a~~~~H~vp-----~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~ 221 (334)
T PRK02126 151 ----PWFRVRAAFLDHGIP-----CLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGG 221 (334)
T ss_pred ----CCEEEEEEEccCCCc-----eeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCc
Confidence 489999999976422 457777631
Q ss_pred ------------------CCceeEEEcCCCCCccc----cccc-cCCcEEEeccCCCcCCC------ccccCCHHHHHHH
Q 021237 227 ------------------QGQLTLYYEPHCVYNQN----FLEK-ERSDIIITPVIKQLLPK------FTLVSGQEDAVKL 277 (315)
Q Consensus 227 ------------------~~~~~i~~sGDt~~~~~----~~~~-~~~Dl~i~~~~g~~~p~------~~~h~~~eea~~~ 277 (315)
.++.+|.|+|||++.+. +.+. .++|++++++ .|... ...|+++++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Ea--t~~~~~~~~a~~~gH~t~~~a~~l 299 (334)
T PRK02126 222 EHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVELAAGVDLLFIEA--VFLDEDAEKARRKNHLTARQAGRL 299 (334)
T ss_pred cceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHHHHcCCCEEEEEc--ccChHHhhhcccCCCCCHHHHHHH
Confidence 13568999999999874 3332 4899999986 23321 1249999999999
Q ss_pred HHHcCCCEEEEeecccccccchhHHHH
Q 021237 278 AKLLHAKFIVPMKNGDLDSKGFLASII 304 (315)
Q Consensus 278 ~~~l~~k~~ip~H~g~f~~~~~~~~~~ 304 (315)
++..+++.++.+|+..-..... +.++
T Consensus 300 A~~a~vk~LvLtH~sp~~~~~~-~~l~ 325 (334)
T PRK02126 300 AREAGVKRLLPFHFSPRYQGRG-AELY 325 (334)
T ss_pred HHHcCCCEEEEEecCcccCCcH-HHHH
Confidence 9999999999999996543333 4443
No 15
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.60 E-value=3.3e-14 Score=132.12 Aligned_cols=195 Identities=13% Similarity=0.065 Sum_probs=123.7
Q ss_pred CeEEEEEe-CCcEEEEccccCCCCCCCCCccccCCccccCCCC---CCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCC
Q 021237 86 GNSWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ---LSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (315)
Q Consensus 86 hss~lI~~-~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~---~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~ 161 (315)
.+|++|+. ++.+||||+ |.... ..+ .+...+. --++.+||+|||||.|+|| +.+|..|.++. .
T Consensus 38 rss~ll~~~g~~~iLID~---Gpd~r--~ql-----~~~~~~~~~~gl~~~~IdaI~lTH~H~DH--i~GL~~L~~~~-~ 104 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNA---SPDIR--QQI-----QATPALHPQRGLRHTPIAGVVLTDGEIDH--TTGLLTLREGQ-P 104 (302)
T ss_pred ccEEEEEeCCCEEEEEEC---CHHHH--HHH-----HhCcccccccCCCcccCCEEEEeCCCcch--hhCHHHHcCCC-C
Confidence 57889976 446899999 53220 000 0111110 0123478999999999999 67888887553 7
Q ss_pred ceEEEcCChHHHHhhc--CC-------ceEEeCCCceEEecccCCCcEEEEEeecCCc---------CCCCCCCccEEEE
Q 021237 162 LKVIATPNAKTLLDPL--FQ-------NVTYVEPGQSSEIEGRNGSKLRVKATAGPVL---------GPPWQRPENGYLV 223 (315)
Q Consensus 162 ~~v~~~p~~~~~l~~~--~~-------~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~---------g~~~~~~~~g~~i 223 (315)
++||+++...+.|++. +. +...+..++.+++.....++++|+++|..|. |+.......||.|
T Consensus 105 lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i 184 (302)
T TIGR02108 105 FTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKI 184 (302)
T ss_pred ceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEE
Confidence 9999999988777531 11 1245566666666410113599999998632 2111123679999
Q ss_pred EecCCceeEEEcCCCCCcc-ccccc-cCCcEEEeccCCCcCC-------------CccccCCHH---HHHHHHHHcCCCE
Q 021237 224 NSSQGQLTLYYEPHCVYNQ-NFLEK-ERSDIIITPVIKQLLP-------------KFTLVSGQE---DAVKLAKLLHAKF 285 (315)
Q Consensus 224 ~~~~~~~~i~~sGDt~~~~-~~~~~-~~~Dl~i~~~~g~~~p-------------~~~~h~~~e---ea~~~~~~l~~k~ 285 (315)
+.++.+.++.|++|+++.+ ...+. .+.|++++++ .-|.. ....|++.+ ++++.+...++++
T Consensus 185 ~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida-~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~ 263 (302)
T TIGR02108 185 EDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDG-TLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIAR 263 (302)
T ss_pred EeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeC-CCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCc
Confidence 8752146999999998544 33333 4799999996 21221 112366654 6666777789999
Q ss_pred EEEeecccc
Q 021237 286 IVPMKNGDL 294 (315)
Q Consensus 286 ~ip~H~g~f 294 (315)
++.+|...-
T Consensus 264 ~~l~Hl~h~ 272 (302)
T TIGR02108 264 KVLIHINNT 272 (302)
T ss_pred EEEEecCCC
Confidence 999999863
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.57 E-value=1.7e-13 Score=138.56 Aligned_cols=192 Identities=16% Similarity=0.200 Sum_probs=122.3
Q ss_pred CCceEEEEEe------CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCC--CCCCCCEEEEcCCCCCCC
Q 021237 76 TDVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLS--DLPQVDCLLITQSLDDHC 147 (315)
Q Consensus 76 ~~~~~itwlG------hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~--~lp~iD~VlISH~H~DHl 147 (315)
.+.|+++.+| .||++|+.++.+||+||++..... . ...++.+... ++.++|+|||||.|.||
T Consensus 172 ~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~-~--------~~~~p~l~~~~~~~~~IDaVlITHaH~DH- 241 (630)
T TIGR03675 172 DRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGAN-G--------DNAYPYLDVPEFQLDELDAVVITHAHLDH- 241 (630)
T ss_pred CCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCcccc-c--------hhhcccccccCCCHHHCcEEEECCCCHHH-
Confidence 3458999997 489999999999999995432110 0 0111211111 24589999999999999
Q ss_pred ChhcHHHhhhhCCCceEEEcCChHHHHh----h-------cC--------------CceEEeCCCceEEecccCCCcEEE
Q 021237 148 HLKTLKPLSKMSPNLKVIATPNAKTLLD----P-------LF--------------QNVTYVEPGQSSEIEGRNGSKLRV 202 (315)
Q Consensus 148 d~~tl~~l~~~~p~~~v~~~p~~~~~l~----~-------~~--------------~~i~~l~~~~~~~l~~~~g~~l~i 202 (315)
.+.|..|.+...+.+||+++.+...++ + .+ .++..+++++.+++. ++++|
T Consensus 242 -iG~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~----~~i~v 316 (630)
T TIGR03675 242 -SGLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA----PDIKL 316 (630)
T ss_pred -HhhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec----CCEEE
Confidence 588988876433678999887544221 0 01 246788999999885 48999
Q ss_pred EEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCcccc-c-----cccCCcEEEeccCCCcCCCccccCCHHHHHH
Q 021237 203 KATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNF-L-----EKERSDIIITPVIKQLLPKFTLVSGQEDAVK 276 (315)
Q Consensus 203 ~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~-~-----~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~ 276 (315)
++.++-|.- ..+.+.+...+++.+|+|+||.++.... . ...++|+++++. .|-..-..|...+++.+
T Consensus 317 t~~~AGHil-----Gsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ES--TYg~~~~~~~~r~~~e~ 389 (630)
T TIGR03675 317 TFYNAGHIL-----GSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMES--TYGGRDDYQPSREEAEK 389 (630)
T ss_pred EEecCcccc-----CceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeC--ccCCCCCCCCCHHHHHH
Confidence 999875531 1345666654334699999999875432 1 123789999986 23222122334433333
Q ss_pred ----HHHH---cCCCEEEEe
Q 021237 277 ----LAKL---LHAKFIVPM 289 (315)
Q Consensus 277 ----~~~~---l~~k~~ip~ 289 (315)
.+++ -+.+++||+
T Consensus 390 ~l~~~I~~tl~~gG~VLIP~ 409 (630)
T TIGR03675 390 ELIKVVNETIKRGGKVLIPV 409 (630)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 2222 267888886
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.55 E-value=1.3e-13 Score=134.11 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=123.9
Q ss_pred EeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCC--CCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCC
Q 021237 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ--LSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (315)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~--~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~ 161 (315)
+|.||++|+.++..|||||.. .. +-.-. .+.....|.+. .+...++|+|+|||.|.|| ++++..|....+.
T Consensus 12 iG~n~~ll~~~~~~iliD~G~---~~-~~~~~-~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DH--iggl~~l~~~~~~ 84 (422)
T TIGR00649 12 IGKNMYVVEIDDDVFIFDAGI---LF-PEDAM-LGVDGVIPDFSYLQENQDKVKGIFITHGHEDH--IGAVPYLFHTVGF 84 (422)
T ss_pred cCCeEEEEEECCeEEEEeCCC---CC-Ccccc-cCCccccCCHHHHHhccccCCEEEECCCChHH--hCcHHHHHHhCCC
Confidence 467999999999999999943 21 10000 00011112111 1123489999999999999 6889888776544
Q ss_pred ceEEEcCChHHHHhhc--------CCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEE
Q 021237 162 LKVIATPNAKTLLDPL--------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLY 233 (315)
Q Consensus 162 ~~v~~~p~~~~~l~~~--------~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~ 233 (315)
+++|+++.+...++.. ..++.+++.++.++++ ++++|+++++.|+.+ ..+||.+++++ .+++
T Consensus 85 ~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig----~~~~v~~~~~~H~~p----~s~g~~i~~~~--~~iv 154 (422)
T TIGR00649 85 PPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETG----ENHTIEFIRITHSIP----DSVGFALHTPL--GYIV 154 (422)
T ss_pred CeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeC----CceEEEEEECCCCCc----ceEEEEEEeCC--cEEE
Confidence 6899988876655431 1346788899999984 369999999976532 25789998754 4899
Q ss_pred EcCCCCCcc--------c---cccc--cCCcEEEeccCCCcCCCcc--ccCCHHHHHHHHHHcCCCEEEEeecc
Q 021237 234 YEPHCVYNQ--------N---FLEK--ERSDIIITPVIKQLLPKFT--LVSGQEDAVKLAKLLHAKFIVPMKNG 292 (315)
Q Consensus 234 ~sGDt~~~~--------~---~~~~--~~~Dl~i~~~~g~~~p~~~--~h~~~eea~~~~~~l~~k~~ip~H~g 292 (315)
|+||+.+.. . +.+. .++|+++.+......+... -|...++..+.+++.+.+ ++..|++
T Consensus 155 ytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~~-viv~~fa 227 (422)
T TIGR00649 155 YTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAKGR-VIVATFA 227 (422)
T ss_pred ECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCCE-EEEEEcc
Confidence 999997632 1 1122 2689999986322223222 144556666666666544 7778886
No 18
>PRK04286 hypothetical protein; Provisional
Probab=99.52 E-value=4.6e-13 Score=124.36 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=106.6
Q ss_pred CeEEEEEeCCcEEEEccccCCC-CCCCCCccccCCcccc----CCCCCCCCCCCCEEEEcCCCCCCCChhcHHHh---hh
Q 021237 86 GNSWLWDLDGVKVLVDPILVGN-LDFGIPWLFDAGKKFL----KSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL---SK 157 (315)
Q Consensus 86 hss~lI~~~g~~ILiDP~~~g~-~s~p~~~~~~~~~~~~----~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l---~~ 157 (315)
+||++|+.++.+|||||+.+.. -..+.+... ...+.. ..+ .+.+.++|+|||||.|+||++.-..... .+
T Consensus 15 ~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~-~~~~~~~~~~~~i-~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~ 92 (298)
T PRK04286 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHP-IELERLEEVREKI-LEYAKKADVITISHYHYDHHTPFYEDPYELSDE 92 (298)
T ss_pred eeEEEEEECCeEEEEcCCCCcCccccCCCCcc-hhHHHHHHHHHHh-hcccccCCEEEecCCccccCCCccccccccccc
Confidence 5899999999999999964310 000111000 000100 011 3445689999999999999742221100 11
Q ss_pred hCCCceEEEcCChH-----------HHHhhc--------CCceEEeCCCceEEecccCCCcEEEEEe-ecCCcCCCCCCC
Q 021237 158 MSPNLKVIATPNAK-----------TLLDPL--------FQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRP 217 (315)
Q Consensus 158 ~~p~~~v~~~p~~~-----------~~l~~~--------~~~i~~l~~~~~~~l~~~~g~~l~i~~~-p~~~~g~~~~~~ 217 (315)
+. ..+++..+... ...+.. ......+..++.+.++ +++|+++ |..|... ..
T Consensus 93 ~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-----~~~V~~~~~v~H~~~---~~ 163 (298)
T PRK04286 93 EI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-----GTTIEFSPPVPHGAD---GS 163 (298)
T ss_pred cc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-----CEEEEEeccCCCCCC---CC
Confidence 10 12232221111 011001 0123556778888886 7999876 4434211 01
Q ss_pred ccEE----EEEecCCceeEEEcCCCC--Cccccccc---cCCcEEEeccCCCcC--CCc---cccCCHHHHHHHHHHcCC
Q 021237 218 ENGY----LVNSSQGQLTLYYEPHCV--YNQNFLEK---ERSDIIITPVIKQLL--PKF---TLVSGQEDAVKLAKLLHA 283 (315)
Q Consensus 218 ~~g~----~i~~~~~~~~i~~sGDt~--~~~~~~~~---~~~Dl~i~~~~g~~~--p~~---~~h~~~eea~~~~~~l~~ 283 (315)
..|| .|+.+ +.+++|+||++ +.+...+. .++|++++..--.|. ++. ..|+..+.+.+++.. ++
T Consensus 164 ~~Gy~i~~ri~~g--g~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~-~~ 240 (298)
T PRK04286 164 KLGYVIMVRISDG--DESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN-TP 240 (298)
T ss_pred ccceEEEEEEEeC--CEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHHHhc-CC
Confidence 3344 44553 46999999999 44444332 388999985311122 111 124444444444444 99
Q ss_pred CEEEEe-ecccc-cccchhHHH
Q 021237 284 KFIVPM-KNGDL-DSKGFLASI 303 (315)
Q Consensus 284 k~~ip~-H~g~f-~~~~~~~~~ 303 (315)
|+++.+ |.+.- +...+...+
T Consensus 241 k~liLtHHls~~~n~~~~~~~l 262 (298)
T PRK04286 241 ETLILDHHLLRDKNYREKLKEL 262 (298)
T ss_pred CEEEEeccccccCCcHHHHHHH
Confidence 999999 55532 233455554
No 19
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.51 E-value=3.4e-13 Score=124.78 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=56.2
Q ss_pred ecCCceeEEEcCCCCCcccccccc-CCcEEEeccCCCcCCC------ccccCCHHHHHHHHHHcCCCEEEEeecccccc
Q 021237 225 SSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLPK------FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDS 296 (315)
Q Consensus 225 ~~~~~~~i~~sGDt~~~~~~~~~~-~~Dl~i~~~~g~~~p~------~~~h~~~eea~~~~~~l~~k~~ip~H~g~f~~ 296 (315)
...+|.+|.|+|||.+++.+.+.. +.|+++.++ .+.+. ...|++.+||++++++.++|.++.+|....-.
T Consensus 186 ~~~~G~~v~ysGDT~p~~~~~~~a~~aDlLiHEa--t~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~ 262 (292)
T COG1234 186 EPRKGKSVVYSGDTRPCDELIDLAKGADLLIHEA--TFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYP 262 (292)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhcCCCEEEEec--cCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeeccccc
Confidence 333457999999999999887764 999999997 23221 11299999999999999999999999986553
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.49 E-value=1.6e-13 Score=116.60 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=108.0
Q ss_pred EEEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCC
Q 021237 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (315)
Q Consensus 82 twlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~ 161 (315)
.+.+++|++|+.++.+|||||..+... ... +.+..+. ..++|+|+|||.|.|| ++++..+.++ ++
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~~----~~~-----~~l~~~~---~~~i~~i~iTH~H~DH--~~g~~~~~~~-~~ 66 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEAE----DLL-----AELKKLG---PKDIDAIILTHGHPDH--IGGLPELLEA-PG 66 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChhH----HHH-----HHHHHcC---chhhcEEEecccCcch--hccHHHHHhC-CC
Confidence 367899999999999999999432110 000 0011122 3489999999999999 6888888765 57
Q ss_pred ceEEEcCChHHHHhh---------c----CCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCC
Q 021237 162 LKVIATPNAKTLLDP---------L----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 228 (315)
Q Consensus 162 ~~v~~~p~~~~~l~~---------~----~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~ 228 (315)
+++|+++...+.++. . ..++..++.+++++++ +.+++.++...+.. ...++.+..
T Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~----~~~~~~~~~--- 134 (183)
T smart00849 67 APVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-----GLELEVIHTPGHTP----GSIVLYLPE--- 134 (183)
T ss_pred CcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEeC-----CceEEEEECCCCCC----CcEEEEECC---
Confidence 889987777766652 1 2456778889999986 45555555421111 134555543
Q ss_pred ceeEEEcCCCCCccccccccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 021237 229 QLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (315)
Q Consensus 229 ~~~i~~sGDt~~~~~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H 290 (315)
.+++|+||+.+...... .. ..+....+....++++.+.+.+.++++|.|
T Consensus 135 -~~vl~~gD~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 135 -GKILFTGDLLFSGGIGR------TD------DDGGDASASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred -CCEEEECCeeeccCCCC------cc------cCCCCccHHHHHHHHHHhhcCCccEeecCC
Confidence 48999999987665300 00 011111123456777777788889899887
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.38 E-value=9.6e-12 Score=123.15 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=133.8
Q ss_pred CceEEEEE------eCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCC--CCCCCCCCCEEEEcCCCCCCCC
Q 021237 77 DVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSF--QLSDLPQVDCLLITQSLDDHCH 148 (315)
Q Consensus 77 ~~~~itwl------Ghss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~--~~~~lp~iD~VlISH~H~DHld 148 (315)
+.+++.-+ |.|+++++.++.-+++|+... +|-... .+..-..|.+ -.+...++++|+|||.|.||
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~----fp~~~~-~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDH-- 79 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLK----FPEDDL-LGVDLIIPDFSYLEENKDKVKGIFLTHGHEDH-- 79 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccc----cCcccc-ccccEEecChHHhhhccccceEEEecCCchhh--
Confidence 44555555 579999999999999999442 121111 0112233422 22333589999999999999
Q ss_pred hhcHHHhhhhCCCceEEEcCChHHHHhhc------C---CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCcc
Q 021237 149 LKTLKPLSKMSPNLKVIATPNAKTLLDPL------F---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (315)
Q Consensus 149 ~~tl~~l~~~~p~~~v~~~p~~~~~l~~~------~---~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~ 219 (315)
+++|.+|..+...+++|+++.+.+.++.. . .++++++.+++++++ +++|+++|..||-+ ..+
T Consensus 80 IGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~-----~~~v~f~~vtHSIP----ds~ 150 (555)
T COG0595 80 IGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFG-----SFEVEFFPVTHSIP----DSL 150 (555)
T ss_pred ccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeC-----cEEEEEEeecccCc----cce
Confidence 69999998766459999999988765433 1 478999999999996 89999999987744 368
Q ss_pred EEEEEecCCceeEEEcCCCCCcc-----------cccccc--CCcEEEeccCCCcCCCccc--cCCHHHHHHHHHHcCCC
Q 021237 220 GYLVNSSQGQLTLYYEPHCVYNQ-----------NFLEKE--RSDIIITPVIKQLLPKFTL--VSGQEDAVKLAKLLHAK 284 (315)
Q Consensus 220 g~~i~~~~~~~~i~~sGDt~~~~-----------~~~~~~--~~Dl~i~~~~g~~~p~~~~--h~~~eea~~~~~~l~~k 284 (315)
|++|+++.+ .|.|+||-.++. .+.+++ ++++++.+..-+..|.+.. +--.+...++++..+.+
T Consensus 151 g~~i~Tp~G--~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a~gr 228 (555)
T COG0595 151 GIVIKTPEG--NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNAKGR 228 (555)
T ss_pred EEEEECCCc--cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 999999764 899999975443 123334 6888888875555564432 11234444455555666
Q ss_pred EEEEe
Q 021237 285 FIVPM 289 (315)
Q Consensus 285 ~~ip~ 289 (315)
+++.+
T Consensus 229 VIv~t 233 (555)
T COG0595 229 VIVTT 233 (555)
T ss_pred EEEEE
Confidence 66644
No 22
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.37 E-value=2.3e-12 Score=124.31 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=111.3
Q ss_pred CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCceEE
Q 021237 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (315)
Q Consensus 86 hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (315)
-|||||+. +.++||||+...... .++ ..+.. .-++.+||+|++||.|.|| .+++..|.+++|+++++
T Consensus 33 ~NsyLI~~-~~~vLIDtg~~~~~~---~~~-----~~l~~--~~~~~~Id~IilTH~H~DH--iggl~~l~~~~p~a~V~ 99 (394)
T PRK11921 33 YNSYLIKD-EKTVLIDTVWQPFAK---EFV-----ENLKK--EIDLDKIDYIVANHGEIDH--SGALPELMKEIPDTPIY 99 (394)
T ss_pred EEEEEEeC-CCEEEEeCCCCCcHH---HHH-----HHHHh--hcCcccCCEEEeCCCCCch--hhHHHHHHHHCCCCEEE
Confidence 37999974 678999995432111 011 11101 1123479999999999999 68999998877889999
Q ss_pred EcCChHHHHhhcC---CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCcc
Q 021237 166 ATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 242 (315)
Q Consensus 166 ~~p~~~~~l~~~~---~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~ 242 (315)
+++.....++... .++..++.+++++++ +..+++..+|+.|+.. .+.+.+. + .+|+|+||+. +.
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG---~~~l~~i~tP~~H~p~-----~~~~y~~--~--~~vLFsgD~f-G~ 166 (394)
T PRK11921 100 CTKNGAKSLKGHYHQDWNFVVVKTGDRLEIG---SNELIFIEAPMLHWPD-----SMFTYLT--G--DNILFSNDAF-GQ 166 (394)
T ss_pred ECHHHHHHHHHHhCCCCceEEeCCCCEEeeC---CeEEEEEeCCCCCCCC-----ceEEEEc--C--CCEEEecCcc-cc
Confidence 9888766665432 256778999999997 2234444446523211 2223232 2 3799999962 22
Q ss_pred ccccccCCc------EEEeccCCCcCCCc--cccCCHHHHHHHHH--HcCCCEEEEeeccccccc--chhHHHHhhcC
Q 021237 243 NFLEKERSD------IIITPVIKQLLPKF--TLVSGQEDAVKLAK--LLHAKFIVPMKNGDLDSK--GFLASIIQSEG 308 (315)
Q Consensus 243 ~~~~~~~~D------l~i~~~~g~~~p~~--~~h~~~eea~~~~~--~l~~k~~ip~H~g~f~~~--~~~~~~~~~~g 308 (315)
++....-+| ..+.+. -.|+-.. ........+++.++ ++.++.++|.|...++.. ..++...+++.
T Consensus 167 ~~~~~~~~~d~~~~~~~~~~~-~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~~~~~~~~~~~Y~~~~~ 243 (394)
T PRK11921 167 HYASELMYNDLVDQGELYQEA-IKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIWRDNPLQIVEKYLEWAA 243 (394)
T ss_pred cccCcccccccccchhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEEeCCHHHHHHHHHHHhh
Confidence 211100000 000000 0111000 00113467777777 457999999996666543 45555555543
No 23
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.36 E-value=4.1e-11 Score=114.47 Aligned_cols=190 Identities=19% Similarity=0.248 Sum_probs=125.3
Q ss_pred CceEEEEEe------CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCC--CCCEEEEcCCCCCCCC
Q 021237 77 DVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP--QVDCLLITQSLDDHCH 148 (315)
Q Consensus 77 ~~~~itwlG------hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp--~iD~VlISH~H~DHld 148 (315)
.-.+||.|| .||+|+++...+||+||..+..+. | ...+|-+...++. .+|+|+|||.|.||+
T Consensus 179 ~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~-~--------~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~- 248 (637)
T COG1782 179 RWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGN-G--------EDAFPYLDVPEFQPDELDAVIITHAHLDHC- 248 (637)
T ss_pred ceEEEEeeccchhccceeEEEecCCceEEEeccccCCCC-c--------cccCcccccccccccccceEEEeecccccc-
Confidence 336888886 599999999999999997653221 1 1233322222221 589999999999996
Q ss_pred hhcHHHhhhhCCCceEEEcCChHHH---Hhh--------cC--------------CceEEeCCCceEEecccCCCcEEEE
Q 021237 149 LKTLKPLSKMSPNLKVIATPNAKTL---LDP--------LF--------------QNVTYVEPGQSSEIEGRNGSKLRVK 203 (315)
Q Consensus 149 ~~tl~~l~~~~p~~~v~~~p~~~~~---l~~--------~~--------------~~i~~l~~~~~~~l~~~~g~~l~i~ 203 (315)
+.|..|-+-.-+-+||+++.+.+. |+. .| ...+.||.++..++. .+++++
T Consensus 249 -G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa----PDirLT 323 (637)
T COG1782 249 -GFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA----PDIRLT 323 (637)
T ss_pred -cchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC----CccEEE
Confidence 778887654336799999987552 111 11 245789999988886 589998
Q ss_pred EeecCC-cCCCCCCCccEEEEEecCCceeEEEcCCCCCcccc-cc-----ccCCcEEEeccCCCcCCCccccCCHHHHHH
Q 021237 204 ATAGPV-LGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNF-LE-----KERSDIIITPVIKQLLPKFTLVSGQEDAVK 276 (315)
Q Consensus 204 ~~p~~~-~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~-~~-----~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~ 276 (315)
+.-+-| .|. +.--+..+++.+.|.|+||-.|...- .+ ...++.++++. .|-..-+.+..-+||-+
T Consensus 324 f~NAGHILGS------A~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEs--TYGg~~d~q~~R~eaE~ 395 (637)
T COG1782 324 FYNAGHILGS------AMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMES--TYGGRDDVQPPREEAEK 395 (637)
T ss_pred Eecccchhcc------eeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeee--ccCCccccCccHHHHHH
Confidence 876643 232 22223333456899999999886532 22 23778888885 33333344556677766
Q ss_pred HHHHc-------CCCEEEEe
Q 021237 277 LAKLL-------HAKFIVPM 289 (315)
Q Consensus 277 ~~~~l-------~~k~~ip~ 289 (315)
.+.++ +.|++||+
T Consensus 396 ~L~~vi~~t~~rGGKvLIP~ 415 (637)
T COG1782 396 ELIKVINDTLKRGGKVLIPV 415 (637)
T ss_pred HHHHHHHHHHhcCCeEEEEe
Confidence 55544 78888886
No 24
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.29 E-value=7.1e-12 Score=113.45 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=98.7
Q ss_pred EeCeEEEEEe----CCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhC
Q 021237 84 LEGNSWLWDL----DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (315)
Q Consensus 84 lGhss~lI~~----~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~ 159 (315)
++++||+|-. .+..+|||| +... . ..+ ...+....+ +|.+||+||.|.|| ++++..|++++
T Consensus 21 ~~~~~Yll~d~~~~~~~avlIDP---~~~~-~-~~~-------l~~l~~~g~-~i~~Il~TH~H~DH--igg~~~l~~~~ 85 (251)
T PLN02962 21 SSTYTYLLADVSHPDKPALLIDP---VDKT-V-DRD-------LSLVKELGL-KLIYAMNTHVHADH--VTGTGLLKTKL 85 (251)
T ss_pred ceeEEEEEEeCCCCCCEEEEECC---CCCc-H-HHH-------HHHHHHCCC-eeEEEEcCCCCchh--HHHHHHHHHHC
Confidence 3678999864 367899999 3211 0 001 011112223 67899999999999 78999998877
Q ss_pred CCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEec--CCceeEEEcCC
Q 021237 160 PNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS--QGQLTLYYEPH 237 (315)
Q Consensus 160 p~~~v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~--~~~~~i~~sGD 237 (315)
+++++++..... ...-..++.++.+.++ +..+++..+|+|..| ..+|++... ....+++|+||
T Consensus 86 ~~a~v~~~~~~~------~~~d~~l~~g~~i~~g---~~~l~vi~tPGHT~g------~v~~~~~d~~~~~~~~~lftGD 150 (251)
T PLN02962 86 PGVKSIISKASG------SKADLFVEPGDKIYFG---DLYLEVRATPGHTAG------CVTYVTGEGPDQPQPRMAFTGD 150 (251)
T ss_pred CCCeEEeccccC------CCCCEEeCCCCEEEEC---CEEEEEEECCCCCcC------cEEEEeccCCCCCccceEEECC
Confidence 788888755321 0112347788888886 334666777875432 467766431 11236999999
Q ss_pred CCCccccccccCCcEEEeccCCCcCCCccccCCHHHHHH-HHHHcCCC-EEEEeec
Q 021237 238 CVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVK-LAKLLHAK-FIVPMKN 291 (315)
Q Consensus 238 t~~~~~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~-~~~~l~~k-~~ip~H~ 291 (315)
+.+.... +..|+ + +| .. ...-++++ .+..+..+ +++|.|.
T Consensus 151 ~Lf~~g~---Gr~d~---~-~g----~~---~~l~~Sl~~~l~~L~~~~~i~PGHg 192 (251)
T PLN02962 151 ALLIRGC---GRTDF---Q-GG----SS---DQLYKSVHSQIFTLPKDTLIYPAHD 192 (251)
T ss_pred eeccCCc---CCCCC---C-CC----CH---HHHHHHHHHHHHcCCCCeEEECCCC
Confidence 8765432 22231 1 11 00 01234553 55667665 5899997
No 25
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.26 E-value=4e-11 Score=108.55 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=96.0
Q ss_pred eEEEEEeC-CcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCceEE
Q 021237 87 NSWLWDLD-GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (315)
Q Consensus 87 ss~lI~~~-g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (315)
.+|+|..+ +..+|||| |... .+ . +. +....+ ++++|++||.|.|| ++++..|.+++ +++||
T Consensus 11 ~~yli~~~~~~~ilID~---g~~~-~i--~-----~~---l~~~g~-~l~~Il~TH~H~DH--igG~~~l~~~~-~~~V~ 72 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDP---GEAE-PV--L-----DA---LEARGL-TLTAILLTHHHHDH--VGGVAELLEAF-PAPVY 72 (248)
T ss_pred EEEEEEcCCCCEEEEcC---CChH-HH--H-----HH---HHHcCC-eeeEEEeCCCCccc--cCCHHHHHHHC-CCeEE
Confidence 45777654 48999999 4322 10 1 11 111122 68999999999999 68999998876 48888
Q ss_pred EcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCccccc
Q 021237 166 ATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFL 245 (315)
Q Consensus 166 ~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~ 245 (315)
+++.. .+ ......+..+++++++ +..+++..+|+|..| ..+|.+.. .+++|+||+.+....
T Consensus 73 ~~~~~--~~---~~~~~~v~~g~~~~~g---~~~i~v~~tpGHT~g------~i~~~~~~----~~~lftGDtl~~~g~- 133 (248)
T TIGR03413 73 GPAEE--RI---PGITHPVKDGDTVTLG---GLEFEVLAVPGHTLG------HIAYYLPD----SPALFCGDTLFSAGC- 133 (248)
T ss_pred ecccc--cC---CCCcEEeCCCCEEEEC---CEEEEEEECCCCCcc------cEEEEECC----CCEEEEcCccccCCc-
Confidence 86643 11 1224668888899986 234555556664322 45676653 279999999765421
Q ss_pred cccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCE-EEEeeccccc
Q 021237 246 EKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDLD 295 (315)
Q Consensus 246 ~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~-~ip~H~g~f~ 295 (315)
|.... .+ ....-++++.++.+.++. ++|.|..+.+
T Consensus 134 -------------g~~~~-~~-~~~~~~Sl~~l~~l~~~~~i~pGH~~~~~ 169 (248)
T TIGR03413 134 -------------GRLFE-GT-PEQMYDSLQRLAALPDDTLVYCAHEYTLS 169 (248)
T ss_pred -------------CCCCC-CC-HHHHHHHHHHHHcCCCCeEEECCCCchHH
Confidence 11000 00 012245666677777775 7899986654
No 26
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.1e-10 Score=109.45 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=102.5
Q ss_pred EeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCce
Q 021237 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (315)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~ 163 (315)
.|.+|.+|+.++.+||+||.+.. .. +. ..+| +.. ..+++|+|+|||.|.|| .+.+..+....-+.+
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~-~~-~~--------~~~p-~~~-~~~~vDavllTHaHlDH--~g~lp~l~~~~~~~~ 77 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFP-GD-PS--------PERP-LLP-PFPKVDAVLLTHAHLDH--IGALPYLVRNGFEGP 77 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCc-Cc-CC--------ccCC-CCC-CCCCcCEEEeccCchhh--hcccHHHHHhccCCc
Confidence 46799999999999999995532 11 00 1112 221 23379999999999999 688888765322478
Q ss_pred EEEcCChHHHHh----hc--------------------CCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCcc
Q 021237 164 VIATPNAKTLLD----PL--------------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (315)
Q Consensus 164 v~~~p~~~~~l~----~~--------------------~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~ 219 (315)
+|+++.+...++ +. ..+++.++.++.++++ +++|++.++-|.- ..+
T Consensus 78 v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-----~~~v~~~~AGHil-----Gsa 147 (427)
T COG1236 78 VYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-----GVKVTFYNAGHIL-----GSA 147 (427)
T ss_pred eeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-----eEEEEEecCCCcc-----cee
Confidence 999998754322 11 1356679999999997 6999999986421 257
Q ss_pred EEEEEecCCceeEEEcCCCCCccccc----cc-cCCcEEEecc
Q 021237 220 GYLVNSSQGQLTLYYEPHCVYNQNFL----EK-ERSDIIITPV 257 (315)
Q Consensus 220 g~~i~~~~~~~~i~~sGDt~~~~~~~----~~-~~~Dl~i~~~ 257 (315)
+|.++..+ .+|+|+||......-. +. ..+|++++|.
T Consensus 148 ~~~le~~~--~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~Es 188 (427)
T COG1236 148 AILLEVDG--GRILYTGDVKRRKDRLLNGAELPPCIDVLIVES 188 (427)
T ss_pred EEEEEeCC--ceEEEEeccCCCcCCCCCccccCCCCcEEEEec
Confidence 89998755 3799999987543311 11 2369999996
No 27
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.25 E-value=9.3e-11 Score=106.72 Aligned_cols=162 Identities=16% Similarity=0.184 Sum_probs=99.6
Q ss_pred EeCe-EEEEEeC--CcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCC
Q 021237 84 LEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (315)
Q Consensus 84 lGhs-s~lI~~~--g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (315)
+..| +|||..+ +..+|||| +.+. ++ + . .+....+ ++++||+||.|+|| .+++..|.++++
T Consensus 9 ~~dNy~Yli~d~~~~~~vlIDp---~~~~-~i--l-----~---~l~~~g~-~l~~Il~TH~H~DH--~gG~~~l~~~~~ 71 (258)
T PLN02469 9 LEDNYAYLIIDESTKDAAVVDP---VDPE-KV--L-----Q---AAHEHGA-KIKLVLTTHHHWDH--AGGNEKIKKLVP 71 (258)
T ss_pred ccceEEEEEEeCCCCeEEEECC---CChH-HH--H-----H---HHHHcCC-cccEEEecCCCCcc--ccCHHHHHHHCC
Confidence 3455 8999754 47899999 4322 11 1 0 1111223 78999999999999 699999998877
Q ss_pred CceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCC-cEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCC
Q 021237 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGS-KLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (315)
Q Consensus 161 ~~~v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~-~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~ 239 (315)
+++||+..... +. + ....+..++.++++ +. .+++..+|+|..| ..+|.+....+...++|+||+.
T Consensus 72 ~~~V~~~~~~~--~~--~-~~~~v~~gd~i~lg---~~~~~~vi~tPGHT~g------hi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 72 GIKVYGGSLDN--VK--G-CTHPVENGDKLSLG---KDVNILALHTPCHTKG------HISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred CCEEEEechhc--CC--C-CCeEeCCCCEEEEC---CceEEEEEECCCCCCC------CEEEEeccCCCCCCEEEecCcc
Confidence 89998865321 11 1 12457788888885 11 4677778886433 4677775321113699999997
Q ss_pred CccccccccCCcEEEeccCCCcCCCccccCCHHH---HHH-HHHHc-CCCEEEEeeccccc
Q 021237 240 YNQNFLEKERSDIIITPVIKQLLPKFTLVSGQED---AVK-LAKLL-HAKFIVPMKNGDLD 295 (315)
Q Consensus 240 ~~~~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~ee---a~~-~~~~l-~~k~~ip~H~g~f~ 295 (315)
+.... |... .-++++ +++ .+..+ ...+++|.|..+.+
T Consensus 138 f~~g~--------------Gr~~-----~g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~ 179 (258)
T PLN02469 138 FIAGC--------------GKFF-----EGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVK 179 (258)
T ss_pred cCCCc--------------CCCC-----CCCHHHHHHHHHHHHHcCCCCeEEEcCCCCchh
Confidence 64321 2110 012333 443 33345 35689999997765
No 28
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.24 E-value=8e-12 Score=117.80 Aligned_cols=192 Identities=18% Similarity=0.253 Sum_probs=120.7
Q ss_pred CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCceEE
Q 021237 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (315)
Q Consensus 86 hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (315)
-|||||+ +++++||||+ ..++--.++ .++. ..-++.+||+|+++|.-.|| .++|..|.+..|+++++
T Consensus 36 yNSYLI~-~~k~aLID~~---~~~~~~~~l-----~~l~--~~id~k~iDYIi~~H~ePDh--sg~l~~ll~~~p~a~ii 102 (388)
T COG0426 36 YNSYLIV-GDKTALIDTV---GEKFFDEYL-----ENLS--KYIDPKEIDYIIVNHTEPDH--SGSLPELLELAPNAKII 102 (388)
T ss_pred eeeEEEe-CCcEEEECCC---CcchHHHHH-----HHHH--hhcChhcCeEEEECCCCcch--hhhHHHHHHhCCCCEEE
Confidence 3899999 9999999993 332100011 1111 12233469999999999999 79999999988999999
Q ss_pred EcCChHHHHhhcC---CceEEeCCCceEEecccCCCcEEEEEeecC--CcCCCCCCCccEEEEEecCCceeEEEcCCCC-
Q 021237 166 ATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGP--VLGPPWQRPENGYLVNSSQGQLTLYYEPHCV- 239 (315)
Q Consensus 166 ~~p~~~~~l~~~~---~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~--~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~- 239 (315)
++..+++.|+..+ ..+..++.|++++++ +=+++++|++ ||.. +++..... .+|+||+|.+
T Consensus 103 ~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlG-----g~tL~Fi~ap~LHWPd-------~m~TYd~~--~kILFS~D~fG 168 (388)
T COG0426 103 CSKLAARFLKGFYHDPEWFKIVKTGDTLDLG-----GHTLKFIPAPFLHWPD-------TMFTYDPE--DKILFSCDAFG 168 (388)
T ss_pred eeHHHHHHHHHhcCCccceeecCCCCEeccC-----CcEEEEEeCCCCCCCC-------ceeEeecC--CcEEEcccccc
Confidence 9999999888774 237889999999997 5566666665 4422 22222221 3799999964
Q ss_pred --Cccc--cccccCCcEEEeccCCCcCCCccc--cCCHHHHHHHHHHcCCCEEEEeecccccc--cchhHHHHhhc
Q 021237 240 --YNQN--FLEKERSDIIITPVIKQLLPKFTL--VSGQEDAVKLAKLLHAKFIVPMKNGDLDS--KGFLASIIQSE 307 (315)
Q Consensus 240 --~~~~--~~~~~~~Dl~i~~~~g~~~p~~~~--h~~~eea~~~~~~l~~k~~ip~H~g~f~~--~~~~~~~~~~~ 307 (315)
++.. |-+ .++ .+++-.-.|+-...+ +.....+++.+.+++.+.+.|.|...|.. .++++.+.++.
T Consensus 169 ~h~~~~~~fde--d~~-~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~ 241 (388)
T COG0426 169 AHVCDDYRFDE--DIE-ELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWA 241 (388)
T ss_pred ccccchhcccc--CHH-HHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHH
Confidence 1211 101 111 011100001101111 11245666666677899999999998875 46666666653
No 29
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.24 E-value=4.1e-12 Score=107.74 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=97.5
Q ss_pred EEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCc
Q 021237 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (315)
Q Consensus 83 wlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~ 162 (315)
+.+.|||+|+.++..|||||....... ... ....... ...+|++||+||.|+|| ++++..+.++.+..
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~----~~~---~~~~~~~---~~~~i~~vi~TH~H~DH--~ggl~~~~~~~~~~ 70 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFA----KEL---ELALLGI---SGEDIDAVILTHAHPDH--IGGLPELLEAGPVV 70 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHH----HHH---HHHHHHH---TGGGEEEEEESSSSHHH--HTTHHHHHHHTTEE
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhh----HHh---hhhHhhc---cCCCeEEEEECcccccc--ccccccccccccee
Confidence 567899999999999999994432111 000 0000012 22388999999999999 79999999886434
Q ss_pred eEEEcCChHHHHhhcC------------CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCce
Q 021237 163 KVIATPNAKTLLDPLF------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQL 230 (315)
Q Consensus 163 ~v~~~p~~~~~l~~~~------------~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~ 230 (315)
.+.............. .........+..... +...+...+.+.++ .+++++...+ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~--~ 138 (194)
T PF00753_consen 71 IIYSSADAAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIG----GDRILFIIPGPGHG------SDSLIIYLPG--G 138 (194)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEE----TTEEEEEEESSSSS------TTEEEEEETT--T
T ss_pred eeeccccccccccccccccccccccccccccceeeeccccccc----ccccccceeccccC------CcceEEEeCC--C
Confidence 3333332222211110 111222222333332 24555555554222 4567776644 4
Q ss_pred eEEEcCCCCCccccccccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 021237 231 TLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (315)
Q Consensus 231 ~i~~sGDt~~~~~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H 290 (315)
+++|+||..+........ .+ ....+.............++++.++.+++++++|.|
T Consensus 139 ~vlftGD~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 139 KVLFTGDLLFSNEHPNPD-PD---LPLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TEEEEETTSCTTTSSSSS-TS---HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred cEEEeeeEeccCCccccc-cc---cccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 899999998765432210 00 000000000000012345666777788999999987
No 30
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.22 E-value=1.3e-10 Score=108.87 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=100.7
Q ss_pred CeEEEEEeC--CcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCce
Q 021237 86 GNSWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (315)
Q Consensus 86 hss~lI~~~--g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~ 163 (315)
+.+|+|... +..++||| +.+. ++ + . .+....+ ++++||+||.|+|| .+++..|.+++ +++
T Consensus 87 Ny~Yli~d~~t~~~~vVDP---~~a~-~v--l-----~---~l~~~g~-~L~~ILlTH~H~DH--~GG~~~L~~~~-ga~ 148 (329)
T PLN02398 87 NYAYLLHDEDTGTVGVVDP---SEAV-PV--I-----D---ALSRKNR-NLTYILNTHHHYDH--TGGNLELKARY-GAK 148 (329)
T ss_pred eEEEEEEECCCCEEEEEcC---CCHH-HH--H-----H---HHHhcCC-CceEEEECCCCchh--hCCHHHHHHhc-CCE
Confidence 349999643 56899999 5433 21 1 1 1112223 78999999999999 69999998876 689
Q ss_pred EEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCccc
Q 021237 164 VIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN 243 (315)
Q Consensus 164 v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~ 243 (315)
||++......+.. .-..++.++.+.++ +..+++..+|+|..| ..+|.+.. ..++|+||+.+...
T Consensus 149 V~g~~~~~~~i~~---~d~~v~dGd~i~lg---g~~l~vi~tPGHT~G------hI~~~~~~----~~vLFtGDtLf~~g 212 (329)
T PLN02398 149 VIGSAVDKDRIPG---IDIVLKDGDKWMFA---GHEVLVMETPGHTRG------HISFYFPG----SGAIFTGDTLFSLS 212 (329)
T ss_pred EEEehHHhhhccC---CcEEeCCCCEEEEC---CeEEEEEeCCCcCCC------CEEEEECC----CCEEEECCCcCCCC
Confidence 9887664443321 12457788888886 335666778886433 45666542 26899999987543
Q ss_pred cccccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCE-EEEeeccccc
Q 021237 244 FLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDLD 295 (315)
Q Consensus 244 ~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~-~ip~H~g~f~ 295 (315)
. |... ..+ .-..-++++.+..+..+. ++|.|..+.+
T Consensus 213 ~--------------Gr~f-eg~-~~~~~~SL~rL~~L~~~t~VypGHgyt~~ 249 (329)
T PLN02398 213 C--------------GKLF-EGT-PEQMLSSLQKIISLPDDTNIYCGHEYTLS 249 (329)
T ss_pred c--------------CCCC-CCC-HHHHHHHHHHHHcCCCCeEEECCCCChhc
Confidence 2 1100 000 002235566666677664 6699998653
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.22 E-value=1.2e-10 Score=114.90 Aligned_cols=194 Identities=16% Similarity=0.228 Sum_probs=108.2
Q ss_pred eEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCceEEE
Q 021237 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (315)
Q Consensus 87 ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~ 166 (315)
|||||+ ++..+||||+ ...+...++ ..+. ..-++.+||+|++||.|.|| .+++..|.+++|++++++
T Consensus 36 NsYLI~-~~~~vLIDtg---~~~~~~~~l-----~~l~--~~~~~~~Id~IilTH~H~DH--~Ggl~~Ll~~~p~a~V~~ 102 (479)
T PRK05452 36 NSYLIR-EEKNVLIDTV---DHKFSREFV-----QNLR--NEIDLADIDYIVINHAEEDH--AGALTELMAQIPDTPIYC 102 (479)
T ss_pred EEEEEE-CCCEEEEeCC---CcccHHHHH-----HHHH--hcCCHhhCCEEEeCCCCcch--hchHHHHHHHCCCCEEEE
Confidence 899998 5689999994 221100011 1110 01123479999999999999 589999988777899999
Q ss_pred cCChHHHHhhcC----CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCC---
Q 021237 167 TPNAKTLLDPLF----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV--- 239 (315)
Q Consensus 167 ~p~~~~~l~~~~----~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~--- 239 (315)
++.+...+.... .++..++.++++++++ +..+++..+|+-|+.. ...+.+.. .+++|+||..
T Consensus 103 s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~--~~~l~~i~tP~~H~pg-----s~~~y~~~----~~vLFsgD~fG~~ 171 (479)
T PRK05452 103 TANAIDSINGHHHHPEWNFNVVKTGDTLDIGN--GKQLIFVETPMLHWPD-----SMMTYLTG----DAVLFSNDAFGQH 171 (479)
T ss_pred CHHHHHHHHHhhcCCcCeEEEeCCCCEEecCC--CcEEEEEECCCCCCCC-----ceEEEEcC----CCEEEecccccCC
Confidence 888877665431 2567889999999961 1135666666423311 22232332 3799999952
Q ss_pred Cccc--cccccCCcEEEeccCCCcCCCcc--ccCCHHHHHHHHH--HcCCCEEEEeeccccccc--chhHHHHh
Q 021237 240 YNQN--FLEKERSDIIITPVIKQLLPKFT--LVSGQEDAVKLAK--LLHAKFIVPMKNGDLDSK--GFLASIIQ 305 (315)
Q Consensus 240 ~~~~--~~~~~~~Dl~i~~~~g~~~p~~~--~h~~~eea~~~~~--~l~~k~~ip~H~g~f~~~--~~~~~~~~ 305 (315)
+... |......+.+.-+. ..|+.... +.....++++.++ +|.++.++|.|...++.. ..++..++
T Consensus 172 ~~~~~~f~d~~~~~~~~~~~-~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~~i~p~HG~i~r~~~~~~l~~Y~~ 244 (479)
T PRK05452 172 YCDEHLFNDEVDQTELFEQC-QRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLK 244 (479)
T ss_pred CCchhhhcccCchHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHhhcCCCCCEEECCCCceEeCCHHHHHHHHHH
Confidence 1111 11000000000000 00110000 0011256677776 457999999997776643 34444433
No 32
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.14 E-value=2.6e-10 Score=103.47 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=93.8
Q ss_pred eEEEEEe-CCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCceEE
Q 021237 87 NSWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (315)
Q Consensus 87 ss~lI~~-~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (315)
-+|+|.. ++..+|||| |.+. ++ + . .+....+ ++++|++||.|+|| .+++..|.++++.++||
T Consensus 13 y~~li~~~~~~~ilIDp---g~~~-~v--l-----~---~l~~~g~-~l~~IllTH~H~DH--igG~~~l~~~~~~~~V~ 75 (251)
T PRK10241 13 YIWVLNDEAGRCLIVDP---GEAE-PV--L-----N---AIAENNW-QPEAIFLTHHHHDH--VGGVKELVEKFPQIVVY 75 (251)
T ss_pred EEEEEEcCCCcEEEECC---CChH-HH--H-----H---HHHHcCC-ccCEEEeCCCCchh--hccHHHHHHHCCCCEEE
Confidence 3466643 568999999 4332 11 1 1 1111122 57899999999999 68999999888778888
Q ss_pred EcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCccccc
Q 021237 166 ATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFL 245 (315)
Q Consensus 166 ~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~ 245 (315)
++..... ......+..++++.++ +..+++..+|+|..| ..+|.. . .++|+||+.+....
T Consensus 76 ~~~~~~~-----~~~~~~v~~g~~i~ig---~~~~~vi~tPGHT~g------hi~~~~---~---~~lFtGDtlf~~g~- 134 (251)
T PRK10241 76 GPQETQD-----KGTTQVVKDGETAFVL---GHEFSVFATPGHTLG------HICYFS---K---PYLFCGDTLFSGGC- 134 (251)
T ss_pred ecccccc-----cCCceEeCCCCEEEeC---CcEEEEEEcCCCCcc------ceeeec---C---CcEEEcCeeccCCc-
Confidence 7544211 1123567788888886 335677778886433 345532 1 47899998765432
Q ss_pred cccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCE-EEEeecccc
Q 021237 246 EKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDL 294 (315)
Q Consensus 246 ~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~-~ip~H~g~f 294 (315)
|..... + ....-++++.+..+.++. ++|.|-.+.
T Consensus 135 -------------gr~f~g-~-~~~~~~Sl~kl~~l~~~t~i~pgH~y~~ 169 (251)
T PRK10241 135 -------------GRLFEG-T-ASQMYQSLKKINALPDDTLICCAHEYTL 169 (251)
T ss_pred -------------CCCCCC-C-HHHHHHHHHHHHcCCCCEEEECCCCChh
Confidence 110000 0 012245666666777776 457787664
No 33
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.12 E-value=1.2e-09 Score=99.36 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=103.1
Q ss_pred CCCCCEEEEcCCCCCCCChhcHHHhhh-------hCCCceEEEcCChHHHHhhc------------C-CceEEeCCCceE
Q 021237 131 LPQVDCLLITQSLDDHCHLKTLKPLSK-------MSPNLKVIATPNAKTLLDPL------------F-QNVTYVEPGQSS 190 (315)
Q Consensus 131 lp~iD~VlISH~H~DHld~~tl~~l~~-------~~p~~~v~~~p~~~~~l~~~------------~-~~i~~l~~~~~~ 190 (315)
+..++.|||||.|.|| ++++..+.- +.+...||++|...+.++.+ + .++..+..++.+
T Consensus 38 ~~~l~~vFlTH~H~DH--i~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 115 (277)
T TIGR02650 38 VAAFKVFFLHGGHDDH--AAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDERF 115 (277)
T ss_pred HhhcCEEEeecCchhh--hcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEE
Confidence 3478999999999999 577733211 22345677766645555521 1 122223333333
Q ss_pred EecccCCCcEEEEEeecCCcCCCCCCCccEEEEEe------------------------------cCCceeEEEcCCCCC
Q 021237 191 EIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNS------------------------------SQGQLTLYYEPHCVY 240 (315)
Q Consensus 191 ~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~------------------------------~~~~~~i~~sGDt~~ 240 (315)
.+. ..|..+.|++++..|.-. .....||+|.. +....+|.|+|||.+
T Consensus 116 ~~r-~~~~~~~V~~f~t~H~v~--~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~ 192 (277)
T TIGR02650 116 FLD-AAGFFKRVQPFFRKHHAS--EESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLA 192 (277)
T ss_pred Eee-cCCccEEEecCccccccC--ccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCC
Confidence 332 012247778887765421 00134665531 112368999999998
Q ss_pred ccccccccCCcEEEeccCCCcCC---CccccCCHHHHHHHHHHcCCCEEEEeecccccccchhHHHHh
Q 021237 241 NQNFLEKERSDIIITPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQ 305 (315)
Q Consensus 241 ~~~~~~~~~~Dl~i~~~~g~~~p---~~~~h~~~eea~~~~~~l~~k~~ip~H~g~f~~~~~~~~~~~ 305 (315)
... ....+.|+++.++. -... .-..|++.+|+++.+++.+.+.++.+|+..-...+.++.+++
T Consensus 193 ~~~-~~a~~adlLIhEaT-f~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry~~~~~~~~~~ 258 (277)
T TIGR02650 193 ADD-EEEEGGEELIHECC-FFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHISRRIIRILKSIIK 258 (277)
T ss_pred CCh-HHhcCCCEEEEecc-cccccccccCCCCCHHHHHHHHHHcCCCEEEEEeecccccHHHHHHHHH
Confidence 864 23358999999972 1111 122499999999999999999999999987766555544443
No 34
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.07 E-value=1.5e-09 Score=95.80 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=109.9
Q ss_pred eEEEEEeCCcEEEEccccCCCCCCCCCccccCCcc-ccCCC--CCC----------C-CCCCCEEEEcCCCCCCCCh---
Q 021237 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKK-FLKSF--QLS----------D-LPQVDCLLITQSLDDHCHL--- 149 (315)
Q Consensus 87 ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~-~~~~~--~~~----------~-lp~iD~VlISH~H~DHld~--- 149 (315)
-+.+|++.+.+|||||..| . +|+| .+|+- .++ + ..+.|.|.|||.||||.+.
T Consensus 16 mAt~vet~dv~ILiDpGVs----L-------aPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~ 84 (304)
T COG2248 16 MATFVETKDVGILIDPGVS----L-------APKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFD 84 (304)
T ss_pred hhheeecCCeeEEECCccc----c-------CccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCcccc
Confidence 3668999999999999332 1 1222 12221 111 1 2478999999999999874
Q ss_pred ----h---cHHHhhhhCCCceEEEcCCh----------HHHHhhcC--CceEEeCCCceEEecccCCCcEEEEEeecCCc
Q 021237 150 ----K---TLKPLSKMSPNLKVIATPNA----------KTLLDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVL 210 (315)
Q Consensus 150 ----~---tl~~l~~~~p~~~v~~~p~~----------~~~l~~~~--~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~ 210 (315)
. +-+.|-+ .+.-.+-.|.. .+.|++.+ .+-.+...+++++++ +.+|.+-|.-.+
T Consensus 85 ~~y~~s~e~~~eiY~--gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG-----~t~IefS~pvpH 157 (304)
T COG2248 85 GIYEASGETAKEIYK--GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFG-----GTVIEFSPPVPH 157 (304)
T ss_pred chhhhcccchHHHhc--CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeC-----CEEEEecCCCCC
Confidence 2 3333332 12333334421 11333332 234566778899996 889988887777
Q ss_pred CCCCCCCccEEEEEe--cCCceeEEEcCCCC-C--cccc--ccccCCcEEEeccCCCcCCCccc-cCCHHHHHHHH----
Q 021237 211 GPPWQRPENGYLVNS--SQGQLTLYYEPHCV-Y--NQNF--LEKERSDIIITPVIKQLLPKFTL-VSGQEDAVKLA---- 278 (315)
Q Consensus 211 g~~~~~~~~g~~i~~--~~~~~~i~~sGDt~-~--~~~~--~~~~~~Dl~i~~~~g~~~p~~~~-h~~~eea~~~~---- 278 (315)
|+.- .-.||++.. .++..+|.|+.|+- . .+.. .....+|++++.---.|+-.+.. -.+.|.+++=+
T Consensus 158 G~eG--skLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii 235 (304)
T COG2248 158 GREG--SKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII 235 (304)
T ss_pred CCcc--cccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH
Confidence 7732 245666532 22447999999974 2 2222 22248999998521122221111 12344444433
Q ss_pred HHcCCCEEEEeecccc--cccchhHHHHhhc
Q 021237 279 KLLHAKFIVPMKNGDL--DSKGFLASIIQSE 307 (315)
Q Consensus 279 ~~l~~k~~ip~H~g~f--~~~~~~~~~~~~~ 307 (315)
....++ ++.-|.-.= ++...++.+-++.
T Consensus 236 ~~~~~~-lViDHHllRD~~y~e~l~~l~~~~ 265 (304)
T COG2248 236 EETNAT-LVIDHHLLRDKNYREFLEELFERA 265 (304)
T ss_pred HhCcce-EEEeehhhcCCCHHHHHHHHHhhH
Confidence 333444 555555433 3345666655554
No 35
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.01 E-value=1.4e-08 Score=92.92 Aligned_cols=181 Identities=18% Similarity=0.320 Sum_probs=112.0
Q ss_pred EeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCC----CCC-CCCCEEEEcCCCCCCCChhcHHHhhhh
Q 021237 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL----SDL-PQVDCLLITQSLDDHCHLKTLKPLSKM 158 (315)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~----~~l-p~iD~VlISH~H~DHld~~tl~~l~~~ 158 (315)
+|.||+||.++|++|++||... - + + ...||+|.++. ..+ .-||+|+|||.|.||+ ++|..+.+-
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMH---M-G--~---nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHc--GaLPyfsEv 83 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMH---M-G--F---NDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHC--GALPYFSEV 83 (501)
T ss_pred cCceEEEEEECCcEEEEecccc---c-c--c---CccccCCCceeecCCCCcccceeEEEEeeeccccc--ccccchHhh
Confidence 5689999999999999999432 1 1 1 12467774321 122 2699999999999996 777777653
Q ss_pred C-CCceEEEcCChHH----HHhhc--------C--------------CceEEeCCCceEEecccCCCcEEEEEeecCC-c
Q 021237 159 S-PNLKVIATPNAKT----LLDPL--------F--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPV-L 210 (315)
Q Consensus 159 ~-p~~~v~~~p~~~~----~l~~~--------~--------------~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~-~ 210 (315)
. -+-++|.+-.+.. .|++. | .+|..++-.|++.++ .++.|++.-+-| .
T Consensus 84 ~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD----~dl~IrayYAGHVL 159 (501)
T KOG1136|consen 84 VGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD----EDLQIRAYYAGHVL 159 (501)
T ss_pred hCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec----ccceeeeeeccccc
Confidence 1 1456666544321 22221 1 367888888999997 689998876642 2
Q ss_pred CCCCCCCccEEEEEecCCceeEEEcCCCCCcc--cc----ccccCCcEEEeccCCCcCCCc-c-ccCCHHHHHHHHH---
Q 021237 211 GPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ--NF----LEKERSDIIITPVIKQLLPKF-T-LVSGQEDAVKLAK--- 279 (315)
Q Consensus 211 g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~--~~----~~~~~~Dl~i~~~~g~~~p~~-~-~h~~~eea~~~~~--- 279 (315)
| ..-|.+..++ .+|.|+||-...+ ++ .+...+||++.+. .|.--. + --..-.+-+++.-
T Consensus 160 G------AaMf~ikvGd--~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsES--TYattiRdskr~rERdFLk~VhecV 229 (501)
T KOG1136|consen 160 G------AAMFYIKVGD--QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISES--TYATTIRDSKRCRERDFLKKVHECV 229 (501)
T ss_pred c------eeEEEEEecc--eeEEEecCccCCcccccchhhhccccCceEEeec--cceeeeccccchhHHHHHHHHHHHH
Confidence 3 2445566533 6999999966543 22 2335899999885 232200 0 0111233344333
Q ss_pred HcCCCEEEEe
Q 021237 280 LLHAKFIVPM 289 (315)
Q Consensus 280 ~l~~k~~ip~ 289 (315)
.-+.|.+||+
T Consensus 230 a~GGkvlIPv 239 (501)
T KOG1136|consen 230 ARGGKVLIPV 239 (501)
T ss_pred hcCCeEEEEe
Confidence 3378888887
No 36
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.99 E-value=2.9e-09 Score=94.91 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=104.4
Q ss_pred EEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhh-hCCCceEEE
Q 021237 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLKVIA 166 (315)
Q Consensus 88 s~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~-~~p~~~v~~ 166 (315)
|+||+.++.+||+|. |..+ ..++.+ ...+.+ ++.+||+|+|||.|||| .++|..+.+ ..+++++|+
T Consensus 24 S~LVE~~~~riLFDt---G~~~--~~ll~N-----a~~lgv-d~~did~vvlSHgH~DH--~GGL~~~~~~~~~~i~v~a 90 (259)
T COG1237 24 SALVEDEGTRILFDT---GTDS--DVLLHN-----ARLLGV-DLRDIDAVVLSHGHYDH--TGGLPYLLEENNPGIPVYA 90 (259)
T ss_pred EEEEEcCCeEEEEeC---CCCc--HHHHHH-----HHHcCC-CcccCcEEEEeCCCccc--cCchHhHHhccCCCceEEe
Confidence 679999999999999 5322 122321 111222 23478999999999999 689998866 447899999
Q ss_pred cCChHHHHhhc----CCc-------eEEeCCCceEEecccCCCcEEEE-Eee-----c--CC-cCCCC-CCCccEEEEEe
Q 021237 167 TPNAKTLLDPL----FQN-------VTYVEPGQSSEIEGRNGSKLRVK-ATA-----G--PV-LGPPW-QRPENGYLVNS 225 (315)
Q Consensus 167 ~p~~~~~l~~~----~~~-------i~~l~~~~~~~l~~~~g~~l~i~-~~p-----~--~~-~g~~~-~~~~~g~~i~~ 225 (315)
+|...+..... +.. +...+.. .++. .++-.. ..| . .+ .|+.- -....+.++++
T Consensus 91 hp~af~~~~~~~~~~gi~e~~~~~~~~~~~~~--~~I~----~g~~~~Gei~~~~~e~~~~~~dg~~D~~~de~aLi~~~ 164 (259)
T COG1237 91 HPDAFKAKIEVFREIGIPELEELARLILSEEP--DEIV----EGVITLGEIPKVTFEKGGYFEDGEPDPVLDEQALIVET 164 (259)
T ss_pred ChHHHhhhccccccccchhhhhccceeecCCC--ceee----cCeEEecccCccccccccccccCCCCCcCCceEEEEec
Confidence 99886522111 111 1111111 1111 011110 011 0 01 12110 01246777877
Q ss_pred cCCceeEEEcCCCCCccc-----cccccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEeecccccccchh
Q 021237 226 SQGQLTLYYEPHCVYNQN-----FLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFL 300 (315)
Q Consensus 226 ~~~~~~i~~sGDt~~~~~-----~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H~g~f~~~~~~ 300 (315)
+.+ -|..+|-+...-. .++..+ |=+..=++|-...... -.-.++.++.+++++++.++|+|..-+.....+
T Consensus 165 ~~G--lvvItGCsH~GI~niv~~~~~~~g-~rv~~ViGGFHL~~~~-~~~l~~~~~~l~el~v~~i~pcHCTg~~a~~~l 240 (259)
T COG1237 165 EKG--LVVITGCSHPGIVNIVEWAKERSG-DRVKAVIGGFHLIGAS-EERLEEVADYLKELGVEKIYPCHCTGEKAKRYL 240 (259)
T ss_pred CCc--eEEEEcCCcccHHHHHHHHHHhcc-ceeEEEeeeeccCCCc-HHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHH
Confidence 532 6888886543321 122223 3222222331111000 012357888999999999999999888776555
Q ss_pred HHHH
Q 021237 301 ASII 304 (315)
Q Consensus 301 ~~~~ 304 (315)
.+.+
T Consensus 241 ~~~~ 244 (259)
T COG1237 241 RRVF 244 (259)
T ss_pred HHHc
Confidence 5543
No 37
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.98 E-value=4.1e-09 Score=96.51 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=89.6
Q ss_pred CCCCEEEEcCCCCCCCChhcHHHhhhhCCCceEEEcCChHHH-----HhhcCC--ceEEeCCCceEEecccCCCcEEEEE
Q 021237 132 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTL-----LDPLFQ--NVTYVEPGQSSEIEGRNGSKLRVKA 204 (315)
Q Consensus 132 p~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~~p~~~~~-----l~~~~~--~i~~l~~~~~~~l~~~~g~~l~i~~ 204 (315)
+.+|+||+||.|+|| +.++..|++.+ ...+++.+..... +...+. ........+...+. +++++.
T Consensus 61 ~~idai~~TH~H~DH--i~Gl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 132 (269)
T COG1235 61 SDLDAILLTHEHSDH--IQGLDDLRRAY-TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIG-----GLEVTP 132 (269)
T ss_pred cccCeEEEecccHHh--hcChHHHHHHh-cCCcccccceecccchhhhhccchhhhcCCCCcccccccc-----ceeeec
Confidence 479999999999999 68999888754 3344444333221 121110 01111122222332 444444
Q ss_pred eecCCcC------------CC-CCCCccEEEEEecCCceeEEEcCCCCCcccccc-----ccCCcEEEeccCCCcCCCcc
Q 021237 205 TAGPVLG------------PP-WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE-----KERSDIIITPVIKQLLPKFT 266 (315)
Q Consensus 205 ~p~~~~g------------~~-~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~-----~~~~Dl~i~~~~g~~~p~~~ 266 (315)
.+..+.- .. ......||.++... ..+.|.+|+.+.+...+ ....++.+......-.....
T Consensus 133 ~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~ 210 (269)
T COG1235 133 FPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRI--GDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLS 210 (269)
T ss_pred CCCCCccccCCCcccccCcccccccccceeeeeeee--ccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCC
Confidence 3322110 00 01124577765533 37889999987664432 23556666543211111234
Q ss_pred ccCCHHHHHHHHHHcCCCEEEEeecccccccc
Q 021237 267 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKG 298 (315)
Q Consensus 267 ~h~~~eea~~~~~~l~~k~~ip~H~g~f~~~~ 298 (315)
.|+..++++++++++++++++.+|.+......
T Consensus 211 ~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~ 242 (269)
T COG1235 211 NHLSAEEALELIEKLKPKRLVLTHLSHKNDDE 242 (269)
T ss_pred CchhHHHHHHHHHhCCcceEEEEecCCCCCHH
Confidence 58899999999999999999999999776643
No 38
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.96 E-value=3e-08 Score=101.73 Aligned_cols=182 Identities=12% Similarity=0.119 Sum_probs=111.3
Q ss_pred CceEEEEE--eC-eEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHH
Q 021237 77 DVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (315)
Q Consensus 77 ~~~~itwl--Gh-ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 153 (315)
+..+|+++ |+ .|++|+.+++++|||+ |... +.... +.+...|.+....+. +|+|+|||.|.|| .+++.
T Consensus 438 ~~~~v~~lDVGqGdaili~~~~~~iLIDt---G~~~-~~~~~--~~~~l~p~L~~~Gi~-ID~lilTH~d~DH--iGGl~ 508 (662)
T TIGR00361 438 SSWQVDMLDVGQGLAMFIGANGKGILYDT---GEPW-REGSL--GEKVIIPFLTAKGIK-LEALILSHADQDH--IGGAE 508 (662)
T ss_pred CCEEEEEEecCCceEEEEEECCeEEEEeC---CCCC-CCCCc--cHHHHHHHHHHcCCC-cCEEEECCCchhh--hCcHH
Confidence 35788887 43 6889999999999999 4321 10000 111122333334454 9999999999999 79999
Q ss_pred HhhhhCCCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEe-ecCCcCCCCCCCc--cEEEEEecCCce
Q 021237 154 PLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPE--NGYLVNSSQGQL 230 (315)
Q Consensus 154 ~l~~~~p~~~v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~-p~~~~g~~~~~~~--~g~~i~~~~~~~ 230 (315)
.+.++++-.+++. +.+.. .....+.++..|+..+++ +++++++ |...... ..|. +.+.++. ++.
T Consensus 509 ~ll~~~~v~~i~~-~~~~~---~~~~~~~~~~~G~~~~~~-----~~~~~vL~P~~~~~~--~~N~~S~vl~i~~--~~~ 575 (662)
T TIGR00361 509 IILKHHPVKRLVI-PKGFV---EEGVAIEECKRGDVWQWQ-----GLQFHVLSPEAPDPA--SKNNHSCVLWVDD--GGN 575 (662)
T ss_pred HHHHhCCccEEEe-ccchh---hCCCceEecCCCCEEeEC-----CEEEEEECCCCccCC--CCCCCceEEEEEE--CCe
Confidence 9988775445554 43321 112345667778888886 7888776 3221111 2243 4444555 447
Q ss_pred eEEEcCCCCCcccc--ccc---cCCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEe
Q 021237 231 TLYYEPHCVYNQNF--LEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPM 289 (315)
Q Consensus 231 ~i~~sGDt~~~~~~--~~~---~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~ 289 (315)
+++++||.....+- .+. .+.|++.++-.|... .+ +.+.++.++|+.++-.
T Consensus 576 ~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~~HHGS~~------Ss---s~~fl~~v~P~~aiiS 630 (662)
T TIGR00361 576 SWLLTGDLEAEGEQEVMRVFPNIKADVLQVGHHGSKT------ST---SEELIQQVQPKVAIIS 630 (662)
T ss_pred eEEEecCCCHHHHHHHHhcccCcCccEEEeCCCCCCC------CC---hHHHHHhcCCCEEEEE
Confidence 99999999764331 121 267788887644211 11 2366778888887754
No 39
>PRK11539 ComEC family competence protein; Provisional
Probab=98.93 E-value=3.6e-08 Score=102.55 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=93.6
Q ss_pred CCceEEEEE--eC-eEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcH
Q 021237 76 TDVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTL 152 (315)
Q Consensus 76 ~~~~~itwl--Gh-ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl 152 (315)
+.+.+|+.+ || .+.+|+.+|+++|+|+ |... +.... +.+...|.+....+ ++|+|+|||.|.|| .+++
T Consensus 498 ~~~~~v~~lDVGqG~a~li~~~~~~lLiDt---G~~~-~~~~~--~~~~i~P~L~~~Gi-~lD~lilSH~d~DH--~GGl 568 (755)
T PRK11539 498 EYEWRVDMLDVGHGLAVVIERNGKAILYDT---GNAW-PTGDS--AQQVIIPWLRWHGL-TPEGIILSHEHLDH--RGGL 568 (755)
T ss_pred CCcEEEEEEEccCceEEEEEECCEEEEEeC---CCCC-CCCcc--hHHHHHHHHHHcCC-CcCEEEeCCCCccc--CCCH
Confidence 456788887 55 6778999999999999 5321 10000 11112233344455 58999999999999 6899
Q ss_pred HHhhhhCCCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEe-ecCCcCCCCCCC--ccEEEEEecCCc
Q 021237 153 KPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRP--ENGYLVNSSQGQ 229 (315)
Q Consensus 153 ~~l~~~~p~~~v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~-p~~~~g~~~~~~--~~g~~i~~~~~~ 229 (315)
..+.+++|..+++.+.... +......|+..+.+ +++++++ |..+..+ ..| .|.+.++. ++
T Consensus 569 ~~Ll~~~~~~~i~~~~~~~--------~~~~~~~g~~~~~~-----~~~~~vL~P~~~~~~--~~N~~S~Vl~i~~--~~ 631 (755)
T PRK11539 569 ASLLHAWPMAWIRSPLNWA--------NHLPCVRGEQWQWQ-----GLTFSVHWPLEQSND--AGNNDSCVIRVDD--GK 631 (755)
T ss_pred HHHHHhCCcceeeccCccc--------CcccccCCCeEeEC-----CEEEEEEecCcccCC--CCCCccEEEEEEE--CC
Confidence 9998887666666532111 11223456667775 6777666 3222211 223 34444554 45
Q ss_pred eeEEEcCCCCCcccc--cc----ccCCcEEEeccCC
Q 021237 230 LTLYYEPHCVYNQNF--LE----KERSDIIITPVIK 259 (315)
Q Consensus 230 ~~i~~sGDt~~~~~~--~~----~~~~Dl~i~~~~g 259 (315)
.+++++||.....+- .+ ..+.|++.+|-.|
T Consensus 632 ~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vpHHG 667 (755)
T PRK11539 632 HSILLTGDLEAQAEQKLLSRYWQQLAATLLQVPHHG 667 (755)
T ss_pred EEEEEEeCCChHHHHHHHhcCccCcCCCEEEeCCCC
Confidence 799999998654321 11 1256666666433
No 40
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.92 E-value=4.2e-09 Score=94.77 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCCCCCEEEEcCCCCCCCChhcHHHhhhhCC-CceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEE--ee
Q 021237 130 DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP-NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKA--TA 206 (315)
Q Consensus 130 ~lp~iD~VlISH~H~DHld~~tl~~l~~~~p-~~~v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~--~p 206 (315)
...++++||.||.|+|| .+++..|.+.++ ++++|.... +....+ -..++.++.+.++ +++|++ +|
T Consensus 48 ~~~~l~~Il~THhH~DH--sGGn~~i~~~~~~~~~v~g~~~--~r~~~i---~~~~~~~e~~~~~-----g~~v~~l~TP 115 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDH--SGGNEDIKREIPYDIKVIGGAD--DRIPGI---TRGLKDGETVTVG-----GLEVRCLHTP 115 (265)
T ss_pred ccCceeEEEeccccccc--cCcHHHHHhhccCCcEEecCCh--hcCccc---cccCCCCcEEEEC-----CEEEEEEeCC
Confidence 34589999999999999 689999988754 677777641 111111 1237888999997 566655 55
Q ss_pred cCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCcc
Q 021237 207 GPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 242 (315)
Q Consensus 207 ~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~ 242 (315)
+|.. ...+|.+.. ..+.+..|+||+.+..
T Consensus 116 gHT~------~hi~~~~~~-~~~e~~iFtGDtlf~~ 144 (265)
T KOG0813|consen 116 GHTA------GHICYYVTE-STGERAIFTGDTLFGA 144 (265)
T ss_pred CccC------CcEEEEeec-CCCCCeEEeCCceeec
Confidence 5422 356777774 2234788999986643
No 41
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.90 E-value=7.2e-09 Score=100.02 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=101.1
Q ss_pred EeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhC-CCc
Q 021237 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS-PNL 162 (315)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~-p~~ 162 (315)
+|.||.++|..|++|+.||.....-+ + . ...|-++.-|++.||.++|||.|.||+ ..+..+.++. -.-
T Consensus 25 VGRSC~ile~kGk~iMld~gvhpays-g---~-----aslpf~d~vd~s~id~llIthFhldh~--aslp~~~qkTsf~g 93 (668)
T KOG1137|consen 25 VGRSCHILEYKGKTIMLDCGVHPAYS-G---M-----ASLPFYDEVDLSAIDPLLITHFHLDHA--ASLPFTLQKTSFIG 93 (668)
T ss_pred cCceEEEEEecCeEEEeccccCcccc-c---c-----ccccchhhcccccccHHHHhhhhhhhc--ccccceeeeccccc
Confidence 45799999999999999994432111 1 1 223345566788999999999999995 7777775542 134
Q ss_pred eEEEcCChH---HHHhhc----------------------CCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCC
Q 021237 163 KVIATPNAK---TLLDPL----------------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRP 217 (315)
Q Consensus 163 ~v~~~p~~~---~~l~~~----------------------~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~ 217 (315)
++|.+-.+. ++|-+- ..++..+|..+.+++. ++++.+..+-|-+ .
T Consensus 94 rvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~-----gIkf~p~~aGhVl-----g 163 (668)
T KOG1137|consen 94 RVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN-----GIKFWPYHAGHVL-----G 163 (668)
T ss_pred eeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC-----CeEEEeeccchhh-----h
Confidence 555554432 233211 1356667777777776 8999988764322 2
Q ss_pred ccEEEEEecCCceeEEEcCCCC--Ccccccc--c--cCCcEEEecc
Q 021237 218 ENGYLVNSSQGQLTLYYEPHCV--YNQNFLE--K--ERSDIIITPV 257 (315)
Q Consensus 218 ~~g~~i~~~~~~~~i~~sGDt~--~~~~~~~--~--~~~Dl~i~~~ 257 (315)
.|-|+++..+ .+|+|+||-. ++.+... . ..+|+++.+.
T Consensus 164 acMf~veiag--v~lLyTGd~sreeDrhl~aae~P~~~~dvli~es 207 (668)
T KOG1137|consen 164 ACMFMVEIAG--VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITES 207 (668)
T ss_pred heeeeeeece--EEEEeccccchhhcccccchhCCCCCccEEEEEe
Confidence 5789999854 7999999954 4445432 2 3789999875
No 42
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=90.33 Aligned_cols=132 Identities=21% Similarity=0.267 Sum_probs=77.3
Q ss_pred CeEEEEEeCC-cEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCceE
Q 021237 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (315)
Q Consensus 86 hss~lI~~~g-~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v 164 (315)
.+++++..++ .++|||+....... +.....+..... +|++|++||.|+|| .+++..+.+..+.+++
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~----------~~~~~~l~~~~~-~i~~vilTH~H~DH--~gg~~~~~~~~~~~~~ 91 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADA----------EALLEALAALGL-DVDAILLTHGHFDH--IGGAAVLKEAFGAAPV 91 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHH----------HHHHHHHHHcCC-ChheeeecCCchhh--hccHHHHHhhcCCceE
Confidence 3445555444 79999994432100 010011111122 78999999999999 6899999876433666
Q ss_pred EEcCChHHHHhhc------------C----CceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCC
Q 021237 165 IATPNAKTLLDPL------------F----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 228 (315)
Q Consensus 165 ~~~p~~~~~l~~~------------~----~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~ 228 (315)
+..+......... . .....+..++.+.++ +.++++..+|+|..| ..+|.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~tpGHT~g------~~~~~~~~~-- 160 (252)
T COG0491 92 IAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG---GLELEVLHTPGHTPG------HIVFLLEDG-- 160 (252)
T ss_pred EccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEec---CeEEEEEECCCCCCC------eEEEEECCc--
Confidence 3333322222111 0 123344466677775 235888888886443 467777652
Q ss_pred ceeEEEcCCCCCccc
Q 021237 229 QLTLYYEPHCVYNQN 243 (315)
Q Consensus 229 ~~~i~~sGDt~~~~~ 243 (315)
+++|+||..+...
T Consensus 161 --~~l~~gD~~~~~~ 173 (252)
T COG0491 161 --GVLFTGDTLFAGD 173 (252)
T ss_pred --cEEEecceeccCC
Confidence 4999999887654
No 43
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.84 E-value=1.7e-09 Score=107.69 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=119.2
Q ss_pred CceEEEEEeC-----------eEEEEEeCCcE-EEEccccCCCCCCCCCccccCCccccC-CCCCCCCCCCCEEEEcCCC
Q 021237 77 DVFKLTYLEG-----------NSWLWDLDGVK-VLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQSL 143 (315)
Q Consensus 77 ~~~~itwlGh-----------ss~lI~~~g~~-ILiDP~~~g~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~H 143 (315)
+.+.|..||. ++++|+++... ||.|| |.++++ .+ .|++- ......+.++.+|+|||.|
T Consensus 441 ~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDC---GEgTlg--ql----~R~YG~~~~~~~lr~LraI~ISHlH 511 (746)
T KOG2121|consen 441 KDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDC---GEGTLG--QL----VRHYGVENVDTALRKLRAIFISHLH 511 (746)
T ss_pred CCcEEEEecCCccCCCcccceEEEEEeccCCccEEeec---CCchHH--HH----HHHhhhcchHHHHHhHHHHHHHhhc
Confidence 5688999984 78999996554 99999 777631 11 12221 1111224578899999999
Q ss_pred CCCCChhcHHHhhhh---CC---CceE-EEcCCh-HHHHhhcC-------CceEEeC-CCceEE-----------ecc--
Q 021237 144 DDHCHLKTLKPLSKM---SP---NLKV-IATPNA-KTLLDPLF-------QNVTYVE-PGQSSE-----------IEG-- 194 (315)
Q Consensus 144 ~DHld~~tl~~l~~~---~p---~~~v-~~~p~~-~~~l~~~~-------~~i~~l~-~~~~~~-----------l~~-- 194 (315)
.||. .+-+..|+++ .+ .-++ +..|.- .++|+.+- ..+.-+. .++.+. +..
T Consensus 512 ADHh-~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l 590 (746)
T KOG2121|consen 512 ADHH-LGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLL 590 (746)
T ss_pred cccc-ccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHH
Confidence 9995 3333334332 11 1222 233332 33666541 0000011 111110 000
Q ss_pred cCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCcccccccc-CCcEEEeccCCCcCCC------ccc
Q 021237 195 RNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLPK------FTL 267 (315)
Q Consensus 195 ~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~-~~Dl~i~~~~g~~~p~------~~~ 267 (315)
...+...|...|..|-. ..+|..|.... +.+|.|+|||..++.+.+++ +.||+|.|.. ..-. -.-
T Consensus 591 ~~~~l~~i~tc~viHCp-----~syg~~i~~~~-~~Ki~YSGDTrP~~~~v~~g~datlLIHEAT--~ED~l~EeAv~k~ 662 (746)
T KOG2121|consen 591 RELGLESIQTCPVIHCP-----QSYGCSITHGS-GWKIVYSGDTRPCEDLVKAGKDATLLIHEAT--LEDDLEEEAVEKG 662 (746)
T ss_pred HhcCceeEEecCcEecC-----hhhceeEeccc-ceEEEEcCCCCCchhHhhhccCCceEEeehh--hchhHHHHHHHhC
Confidence 01124555556664321 23566666532 46999999999999999887 8999999862 1110 123
Q ss_pred cCCHHHHHHHHHHcCCCEEEEeecc
Q 021237 268 VSGQEDAVKLAKLLHAKFIVPMKNG 292 (315)
Q Consensus 268 h~~~eea~~~~~~l~~k~~ip~H~g 292 (315)
|.+..||++..+..+++.+|.+|++
T Consensus 663 HST~sEAi~V~~~m~ar~liLTHFS 687 (746)
T KOG2121|consen 663 HSTTSEAISVAKKMNAKRLILTHFS 687 (746)
T ss_pred CCCHHHHHHHHHhccchhhhhhhhh
Confidence 9999999999999999999999997
No 44
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.80 E-value=2.6e-07 Score=85.16 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=89.6
Q ss_pred eEEEEE--eC-eEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHh
Q 021237 79 FKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (315)
Q Consensus 79 ~~itwl--Gh-ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 155 (315)
.++..+ |+ .+++|+.++.++|+|+ +... +.+..+|-+....+.+||.+++||.|.|| ++++..+
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dt---g~~~--------~~~~iip~Lk~~GV~~iD~lIlTH~d~DH--iGg~~~v 110 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDT---GNSM--------GQDVIIPYLKSLGVRKLDQLILTHPDADH--IGGLDEV 110 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeec---Cccc--------CceeehhhHhHcCCccccEEEeccCCccc--cCCHHHH
Confidence 455665 44 5889999999999999 4311 11233454555566689999999999999 7999999
Q ss_pred hhhC--CCceEEEcCChHH--HHhhcCCceEEeCCCceEEecccCCCcEEEEEe-ecCCcCCCCCCCccEEEEEecCCce
Q 021237 156 SKMS--PNLKVIATPNAKT--LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQL 230 (315)
Q Consensus 156 ~~~~--p~~~v~~~p~~~~--~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~-p~~~~g~~~~~~~~g~~i~~~~~~~ 230 (315)
.+.+ |.+-+........ .+++.+..+....-|+...++ ++.++++ |....++..+...|...++. ++.
T Consensus 111 l~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-----~~~f~vl~P~~~~~~~~N~~S~Vl~v~~--g~~ 183 (293)
T COG2333 111 LKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWG-----GVVFQVLSPVGGVSDDLNNDSCVLRVTF--GGN 183 (293)
T ss_pred HhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEEC-----CeEEEEEcCCccccccccCcceEEEEEe--CCe
Confidence 8743 2222222222111 244445667788888899987 6777655 33222332221234444555 457
Q ss_pred eEEEcCCCCCc
Q 021237 231 TLYYEPHCVYN 241 (315)
Q Consensus 231 ~i~~sGDt~~~ 241 (315)
+++++||..-.
T Consensus 184 s~LlTGD~e~~ 194 (293)
T COG2333 184 SFLLTGDLEEK 194 (293)
T ss_pred eEEEecCCCch
Confidence 99999997543
No 45
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.31 E-value=5.9e-06 Score=82.08 Aligned_cols=150 Identities=20% Similarity=0.257 Sum_probs=99.4
Q ss_pred CeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhC-CCceE
Q 021237 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS-PNLKV 164 (315)
Q Consensus 86 hss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~-p~~~v 164 (315)
--|+++|++|.+|||||+|..... .+.+ +++ ...++.||+|||||...=| +++|.....+. =+++|
T Consensus 15 ~~cyllqiD~~~iLiDcGwd~~f~--~~~i--------~~l-~~~i~~iDaILLShpd~~h--lGaLpY~~~k~gl~~~V 81 (764)
T KOG1135|consen 15 PLCYLLQIDGVRILIDCGWDESFD--MSMI--------KEL-KPVIPTIDAILLSHPDILH--LGALPYAVGKLGLNAPV 81 (764)
T ss_pred cceEEEEEcCeEEEEeCCCcchhc--cchh--------hhh-hcccccccEEEecCCChHH--hccchhhHhhCCccceE
Confidence 358999999999999998864322 2222 122 2245789999999997778 68888876543 25788
Q ss_pred EEcCChHH--------HHhh-----------------cCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCcc
Q 021237 165 IATPNAKT--------LLDP-----------------LFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (315)
Q Consensus 165 ~~~p~~~~--------~l~~-----------------~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~ 219 (315)
|++-...+ ++.+ .|.+|..|...|.+.+.+ ++.|++|++.++-|. . ..+
T Consensus 82 YAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~g-k~~Gl~itaynAGhm---i--GGs 155 (764)
T KOG1135|consen 82 YATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKG-KGSGLTITAYNAGHM---I--GGS 155 (764)
T ss_pred EEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEecc-ccCceEEeeecCCCc---c--Cce
Confidence 88765421 1222 135899999999988863 246899999988532 1 135
Q ss_pred EEEEEecCCceeEEEcCCCCCcccc-------ccccCCcEEEec
Q 021237 220 GYLVNSSQGQLTLYYEPHCVYNQNF-------LEKERSDIIITP 256 (315)
Q Consensus 220 g~~i~~~~~~~~i~~sGDt~~~~~~-------~~~~~~Dl~i~~ 256 (315)
-|.|...+ .+|.|+=|-....+- -....+-++|..
T Consensus 156 IWkI~k~~--E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITd 197 (764)
T KOG1135|consen 156 IWKISKVG--EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITD 197 (764)
T ss_pred EEEEEecC--ceEEEEEecccchhcccCCccccccCCcceEEec
Confidence 57776643 589999886643321 112367777754
No 46
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.95 E-value=6.3e-05 Score=63.92 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=85.9
Q ss_pred EeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCCce
Q 021237 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (315)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~ 163 (315)
++-+|+++..++.+||||| -+.+. -.+ + .+..+..+++|+|||. || ....+.+++++ .++
T Consensus 21 ~dfng~~~~~p~GnilIDP---~~ls~-~~~------~-----~l~a~ggv~~IvLTn~--dH--vR~A~~ya~~~-~a~ 80 (199)
T PF14597_consen 21 LDFNGHAWRRPEGNILIDP---PPLSA-HDW------K-----HLDALGGVAWIVLTNR--DH--VRAAEDYAEQT-GAK 80 (199)
T ss_dssp EEEEEEEE--TT--EEES--------H-HHH------H-----HHHHTT--SEEE-SSG--GG---TTHHHHHHHS---E
T ss_pred cCceeEEEEcCCCCEEecC---ccccH-HHH------H-----HHHhcCCceEEEEeCC--hh--HhHHHHHHHHh-CCe
Confidence 3456777777888999999 33221 000 0 1234468999999998 99 68889999887 899
Q ss_pred EEEcCChHHHHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCc-CCCCCCCccEEEEEecCCceeEEEcCCCCCcc
Q 021237 164 VIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVL-GPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 242 (315)
Q Consensus 164 v~~~p~~~~~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~-g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~ 242 (315)
|+++......+. ...-..++.|+ ++- +++++..+|++.+ | ...+.++. +++++||...+.
T Consensus 81 i~~p~~d~~~~p--~~~D~~l~dge--~i~----~g~~vi~l~G~ktpG------E~ALlled-----~vLi~GDl~~~~ 141 (199)
T PF14597_consen 81 IYGPAADAAQFP--LACDRWLADGE--EIV----PGLWVIHLPGSKTPG------ELALLLED-----RVLITGDLLRSH 141 (199)
T ss_dssp EEEEGGGCCC-S--S--SEEE-TT---BSS----TTEEEEEE-SSSSTT------EEEEEETT-----TEEEESSSEEBS
T ss_pred eeccHHHHhhCC--CCCccccccCC--Ccc----CceEEEEcCCCCCCc------eeEEEecc-----ceEEecceeeec
Confidence 999776543221 01224566676 332 4899999999632 2 33444442 699999953322
Q ss_pred ccccccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHc----CCCEEEEeec-cccccc-chhHHHH
Q 021237 243 NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL----HAKFIVPMKN-GDLDSK-GFLASII 304 (315)
Q Consensus 243 ~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l----~~k~~ip~H~-g~f~~~-~~~~~~~ 304 (315)
.+-++.++|- ++. +++.++.+.++.| +-+.+++.|. ..|+.+ ..+.+++
T Consensus 142 -----~~g~l~lLpd--~k~------~d~~~a~~sl~RLa~~~~fe~lLvGdGwpi~~~~r~rl~~L~ 196 (199)
T PF14597_consen 142 -----PAGSLSLLPD--EKL------YDPTEARASLRRLAAYPDFEWLLVGDGWPIFRDARQRLRELV 196 (199)
T ss_dssp -----STTS-EE--G--GG-------S-HHHHHHHHHHHHT-TT--EEEESBB--B-S-HHHHHHHHH
T ss_pred -----CCCCeEECCh--HHc------CCHHHHHHHHHHHhccccccEEeecCCchhhhhHHHHHHHHH
Confidence 2345667664 221 2667777666555 6788888874 456544 3555544
No 47
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.92 E-value=9e-06 Score=68.43 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=89.3
Q ss_pred CCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCC-CCCEEEEcCCCCCCCChhcHHHhhhhCCCceEEEcCChHH
Q 021237 94 DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKT 172 (315)
Q Consensus 94 ~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~~p~~~~ 172 (315)
.|..+|||||+.. ++ |-.+ -+.||. ++-+-+-||.|.||+ -+-..|+...|.++-+++....
T Consensus 31 ~~~AviIDPV~et-~~-----------RD~q--likdLgl~LiYa~NTH~HADHi--TGtg~Lkt~~pg~kSVis~~SG- 93 (237)
T KOG0814|consen 31 TGKAVIIDPVLET-VS-----------RDAQ--LIKDLGLDLIYALNTHVHADHI--TGTGLLKTLLPGCKSVISSASG- 93 (237)
T ss_pred CCceEEecchhhc-cc-----------chHH--HHHhcCceeeeeecceeecccc--cccchHHHhcccHHHHhhhccc-
Confidence 6889999998852 32 1000 023332 456889999999995 4445555444555433322210
Q ss_pred HHhhcCCceEEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCCCcc-----cccc-
Q 021237 173 LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ-----NFLE- 246 (315)
Q Consensus 173 ~l~~~~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~-----~~~~- 246 (315)
...-.-++.|+.++++ +-.+++.++|++..| +..|++.. .+..|+||+.... .|.+
T Consensus 94 -----akAD~~l~~Gd~i~~G---~~~le~ratPGHT~G------C~TyV~~d----~~~aFTGDalLIRgCGRTDFQqG 155 (237)
T KOG0814|consen 94 -----AKADLHLEDGDIIEIG---GLKLEVRATPGHTNG------CVTYVEHD----LRMAFTGDALLIRGCGRTDFQQG 155 (237)
T ss_pred -----cccccccCCCCEEEEc---cEEEEEecCCCCCCc------eEEEEecC----cceeeecceeEEeccCccchhcc
Confidence 1223456789999997 345677889986433 34565543 3688999974322 2221
Q ss_pred ------------c--cCCcEEEeccCCCcCC------Cccc------cCCHHHHHHHHHHcC
Q 021237 247 ------------K--ERSDIIITPVIKQLLP------KFTL------VSGQEDAVKLAKLLH 282 (315)
Q Consensus 247 ------------~--~~~Dl~i~~~~g~~~p------~~~~------h~~~eea~~~~~~l~ 282 (315)
| .|=|.++-|. -.|.. |-.. ..+-||-++++..|+
T Consensus 156 ~~~~LyesVH~kIFTLP~d~~iYpa-HdY~G~~~stV~EEk~~NPRLTk~~eeFv~IM~NLn 216 (237)
T KOG0814|consen 156 CPASLYESVHSKIFTLPEDYLIYPA-HDYKGFLVSTVWEEKNLNPRLTKSKEEFVKIMKNLN 216 (237)
T ss_pred ChHHHHHHHhHHheeCCCceEEeec-cccCceEeeehhhhhccCcccccCHHHHHHHHHhcC
Confidence 1 2668888775 44543 1111 235688888888874
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.62 E-value=0.00033 Score=68.20 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=89.3
Q ss_pred CCCEEEEcCCCCCCCChhcHHHhhhhCCCceEEEcCChHHHHhhc----CCceEEeCCCceEEecccCCCcEEEEEeecC
Q 021237 133 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 208 (315)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~~p~~~~~l~~~----~~~i~~l~~~~~~~l~~~~g~~l~i~~~p~~ 208 (315)
..-+=++||.|.|| +.+|..-.. +.++|+++.+++.+... ...++.++-++.+++. ++.++++++.
T Consensus 112 ~~s~yFLsHFHSDH--y~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~-----~~~vt~ldAn 181 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDH--YIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIP-----GIQVTLLDAN 181 (481)
T ss_pred ccceeeeecccccc--ccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeec-----ceEEEEeccc
Confidence 56788999999999 555544332 33499999998855433 2567888888899987 7999999996
Q ss_pred CcCCCCCCCccEEEEEecCCceeEEEcCCCCCcccccc------ccCCcEEEeccCCCcCCCccccCCHHHHHHHHHHc
Q 021237 209 VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE------KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL 281 (315)
Q Consensus 209 ~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~------~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l 281 (315)
|- + ....|+++...+ ..++++||..+.+...+ ...+|.+.+++ -.-+|.+.. ...+++++...++
T Consensus 182 HC-P----Ga~mf~F~~~~~-~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDt-Tycnp~y~F-psq~esvq~v~~~ 252 (481)
T KOG1361|consen 182 HC-P----GAVMFLFELSFG-PCILHTGDFRASADMSKEPALTLEQTIDILYLDT-TYCNPKYDF-PSQEESVQEVVDV 252 (481)
T ss_pred cC-C----CceEEEeecCCC-ceEEecCCcccChhhhhChHHhcCCccceEEEee-cccCCCCCC-ccHHHHHHHHHHH
Confidence 42 2 135666766543 58999999998876543 13789999987 444443221 1345666655544
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.25 E-value=0.0041 Score=58.61 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=82.7
Q ss_pred CCCEEEEcCCCCCCCChhcHHHhhhhC-----CCceEEEcCChHHHHhhc-C-------------------CceEEeCCC
Q 021237 133 QVDCLLITQSLDDHCHLKTLKPLSKMS-----PNLKVIATPNAKTLLDPL-F-------------------QNVTYVEPG 187 (315)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~l~~~~-----p~~~v~~~p~~~~~l~~~-~-------------------~~i~~l~~~ 187 (315)
.|...+|||.|.||+ .+|---.... .+-+||+.|.+.+.|++. | .+...+..+
T Consensus 79 ~I~~ylItH~HLDHi--~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 79 HIKGYLITHPHLDHI--AGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPG 156 (335)
T ss_pred hhheEEecCCchhhH--HHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccc
Confidence 689999999999994 5553211110 245688888888777652 1 023344444
Q ss_pred ceEEeccc--------CCCcEEEEEeecCCcCCCCC-CCccEEEEEecCCceeEEEcCCCCCccc--------cc-----
Q 021237 188 QSSEIEGR--------NGSKLRVKATAGPVLGPPWQ-RPENGYLVNSSQGQLTLYYEPHCVYNQN--------FL----- 245 (315)
Q Consensus 188 ~~~~l~~~--------~g~~l~i~~~p~~~~g~~~~-~~~~g~~i~~~~~~~~i~~sGDt~~~~~--------~~----- 245 (315)
+...+..+ ......++++|..|.+.... -..++|+|+....+..|+|.||++.+.- ..
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap 236 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAP 236 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHh
Confidence 33333200 00123344566643221100 1157999988654568999999997531 11
Q ss_pred --cccCCcEEEeccCCCcC--CC--ccccCCHHHHHHHHHHc
Q 021237 246 --EKERSDIIITPVIKQLL--PK--FTLVSGQEDAVKLAKLL 281 (315)
Q Consensus 246 --~~~~~Dl~i~~~~g~~~--p~--~~~h~~~eea~~~~~~l 281 (315)
..+...-.++|| .--+ |. -..|++|.-.++.++.|
T Consensus 237 ~I~~~~LkaI~IEc-S~~~~~~d~~LyGHLtP~~Li~EL~~L 277 (335)
T PF02112_consen 237 KIASGKLKAIFIEC-SYPNSQPDSQLYGHLTPKHLIEELKVL 277 (335)
T ss_pred hccccccCEEEEEe-CCCCCCCchHhhccCCHHHHHHHHHHH
Confidence 124778889998 3111 11 12399998777776665
No 50
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.011 Score=54.08 Aligned_cols=168 Identities=18% Similarity=0.134 Sum_probs=93.4
Q ss_pred EEEeCeEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhhCCC
Q 021237 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (315)
Q Consensus 82 twlGhss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~ 161 (315)
...|.++ ++..++..+++|..++.-+ ++ .++++ .||.|+|||.|.+|+ +.+..+..
T Consensus 92 ~~~~~~t-l~~d~~~v~v~~~gls~la-----------k~---~vt~d---~i~~vv~t~~~~~hl--gn~~~f~~---- 147 (302)
T KOG4736|consen 92 SLQGQIT-LVVDGGDVVVVDTGLSVLA-----------KE---GVTLD---QIDSVVITHKSPGHL--GNNNLFPQ---- 147 (302)
T ss_pred hhhcccc-eeecCCceEEEecCCchhh-----------hc---CcChh---hcceeEEeccCcccc--cccccccC----
Confidence 3445555 4455677899999554111 12 34444 789999999999995 56555442
Q ss_pred ceEEEcCChHHHHhhcCCce--EEeCCCceEEecccCCCcEEEEEeecCCcCCCCCCCccEEEEEecCCceeEEEcCCCC
Q 021237 162 LKVIATPNAKTLLDPLFQNV--TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (315)
Q Consensus 162 ~~v~~~p~~~~~l~~~~~~i--~~l~~~~~~~l~~~~g~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~ 239 (315)
.+++. .-++..+.++ ++++....+++. .++.|..+|++ ..+ ..+.++...+...+++++||..
T Consensus 148 sp~l~-----~s~e~~gr~~~pt~l~e~~~~~l~----~~~~V~~TpGh-t~~-----~isvlv~n~~~~GTv~itGDLf 212 (302)
T KOG4736|consen 148 SPILY-----HSMEYIGRHVTPTELDERPYLKLS----PNVEVWKTPGH-TQH-----DISVLVHNVDLYGTVAITGDLF 212 (302)
T ss_pred CHHHh-----hhhhhcCCccChhhhccCCccccC----CceeEeeCCCC-CCc-----ceEEEEEeecccceEEEEeecc
Confidence 22211 1111112222 456666777885 58999999995 221 3344554333334999999976
Q ss_pred CccccccccCCcEEEeccCCCcCCCccccCCHHHHHHHHH--H--cCCCEEEEeecccccccchhH
Q 021237 240 YNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAK--L--LHAKFIVPMKNGDLDSKGFLA 301 (315)
Q Consensus 240 ~~~~~~~~~~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~--~--l~~k~~ip~H~g~f~~~~~~~ 301 (315)
..++-. -..|.++.+. +. +..+++.=. . .=+++++|+|...|+...-..
T Consensus 213 ~~~~dl--de~d~i~~~e-~s----------~d~~~kr~~r~~~v~l~D~ivpgHg~~f~v~~~~~ 265 (302)
T KOG4736|consen 213 PREEDL--DEKDDIMSQE-GS----------EDNAAKRQSRNRYVCLADWIVPGHGPPFRVLPNVR 265 (302)
T ss_pred cCCccc--cchhhhhhhc-cC----------CchhhhhhhhhcEEEEeeeeecCCCCceeechhcc
Confidence 544321 1233222322 21 122222211 1 138999999999997754333
No 51
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.85 E-value=0.074 Score=51.87 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=42.1
Q ss_pred eEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccC--CCCCCCCCCCCEEEEcCCCCCCCChhcHHHhhhh----CC
Q 021237 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM----SP 160 (315)
Q Consensus 87 ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~--~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~----~p 160 (315)
|-.+|+.+-.-|+|||..+.... +..+. .-..-+. +|-+|+.||.|.|| +++++-+.+. ..
T Consensus 127 NITfveGdtg~IViDpL~t~~tA----------~aAldl~~~~~g~r-PV~aVIYtHsH~DH--fGGVkGiv~eadV~sG 193 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETA----------KAALDLYNQHRGQR-PVVAVIYTHSHSDH--FGGVKGIVSEADVKSG 193 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHH----------HHHHHHHHHhcCCC-CeEEEEeecccccc--cCCeeeccCHHHcccC
Confidence 45577877778999996653221 11000 0011122 78899999999999 5777766431 23
Q ss_pred CceEEEcC
Q 021237 161 NLKVIATP 168 (315)
Q Consensus 161 ~~~v~~~p 168 (315)
+++|+++.
T Consensus 194 kV~iiAP~ 201 (655)
T COG2015 194 KVQIIAPA 201 (655)
T ss_pred ceeEecch
Confidence 67776643
No 52
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=93.72 E-value=0.21 Score=45.38 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCCCEEEEcCCCCCCCChhcH---HHhhhhCCCceEEEcCChHHHHhhc-------------C---CceEEeCCCceEEe
Q 021237 132 PQVDCLLITQSLDDHCHLKTL---KPLSKMSPNLKVIATPNAKTLLDPL-------------F---QNVTYVEPGQSSEI 192 (315)
Q Consensus 132 p~iD~VlISH~H~DHld~~tl---~~l~~~~p~~~v~~~p~~~~~l~~~-------------~---~~i~~l~~~~~~~l 192 (315)
..|.--+|||.|.||.. +.+ ..+-++. +-++|+.+.+.+.|++. + .+...+++-+...+
T Consensus 111 Q~I~~y~ITH~HLDHIs-GlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHIS-GLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchh-ceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeee
Confidence 36888899999999962 221 1122222 45788888888777653 1 23455666655554
Q ss_pred cccCCCcEEEEEeecCCcCCCCCCC--ccEEEEEecCCceeEEEcCCCCCcc
Q 021237 193 EGRNGSKLRVKATAGPVLGPPWQRP--ENGYLVNSSQGQLTLYYEPHCVYNQ 242 (315)
Q Consensus 193 ~~~~g~~l~i~~~p~~~~g~~~~~~--~~g~~i~~~~~~~~i~~sGDt~~~~ 242 (315)
. --.+++..+|.+ +|..+... ...|++.......-+.+.||+..+.
T Consensus 189 t---~t~l~~~pfpv~-Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~ 236 (356)
T COG5212 189 T---LTRLTGEPFPVS-HGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDD 236 (356)
T ss_pred e---eeeecceeeecc-CCcccCCcccceEEEEecCCCcceEEEecCCCcch
Confidence 3 013556667774 44322212 3456666542234677889998654
No 53
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=80.00 E-value=2.3 Score=27.37 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=23.5
Q ss_pred cccCCHHHHHHHHHHcCCCEEEEeecc
Q 021237 266 TLVSGQEDAVKLAKLLHAKFIVPMKNG 292 (315)
Q Consensus 266 ~~h~~~eea~~~~~~l~~k~~ip~H~g 292 (315)
..|.+.++.+++++.++|+.++++|..
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 348899999999999999999999974
No 54
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=77.45 E-value=4.1 Score=28.77 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=33.6
Q ss_pred CeEEEEEeCCcEEEE-ccccCCCCCCCCCccccCCccccC--CCCCCCCCCCCEEEEcCCC-CCCC
Q 021237 86 GNSWLWDLDGVKVLV-DPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSL-DDHC 147 (315)
Q Consensus 86 hss~lI~~~g~~ILi-DP~~~g~~s~p~~~~~~~~~~~~~--~~~~~~lp~iD~VlISH~H-~DHl 147 (315)
+.|++|..+..+.|+ ++ +... .|.+. .+. +.++..|++|+.. +|++
T Consensus 12 ~p~l~l~~d~~rYlFGn~---gEGt----------QR~~~e~~ik---l~kl~~IFlT~~~~w~~~ 61 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNC---GEGT----------QRACNEHKIK---LSKLNDIFLTGLSSWENI 61 (63)
T ss_pred CCEEEEEeCCceEEeccC---CcHH----------HHHHHHcCCC---ccccceEEECCCCccccc
Confidence 378999999999999 88 5543 12222 233 3588999999999 8874
No 55
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=61.18 E-value=35 Score=34.39 Aligned_cols=30 Identities=0% Similarity=-0.058 Sum_probs=25.9
Q ss_pred ccCCHHHHHHHHHHcCCCEEEEeecccccc
Q 021237 267 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDS 296 (315)
Q Consensus 267 ~h~~~eea~~~~~~l~~k~~ip~H~g~f~~ 296 (315)
.|.+..+..++++++.|+.++.+|...-..
T Consensus 397 Ahvdy~q~s~fi~~i~~~~lilVHGE~neM 426 (668)
T KOG1137|consen 397 AHVDYLQNSEFIADITPPHLILVHGEANEM 426 (668)
T ss_pred echhhhhhHHHHHHhCCCeEEEEecccchh
Confidence 488999999999999999999999854433
No 56
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=56.39 E-value=5 Score=36.36 Aligned_cols=62 Identities=6% Similarity=-0.184 Sum_probs=43.2
Q ss_pred EEEeCCcEEEEccccCCCCCCCCCccccCCccccC-CCCCCCCCCCCEEEEcCCCCCCCChhcHHHh
Q 021237 90 LWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (315)
Q Consensus 90 lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 155 (315)
+..+.+-..+.||.|+.. + |..+. ++++... ..+++.++.++.++++|+|+||.++.++...
T Consensus 98 ~~~~tdpvf~d~~if~s~-g-Pkry~--~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~ 160 (343)
T KOG3798|consen 98 VKFVTDPVWADRASFTSF-G-PKRYR--PPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQ 160 (343)
T ss_pred cEEecchhhccchhhccc-C-ccccc--CCchhhccCCCCceeccccccccccchHHHHhhhccCcc
Confidence 444566678889999865 4 54333 3444333 4567777899999999999999987765443
No 57
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=53.17 E-value=6.3 Score=40.62 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=31.7
Q ss_pred eEEEEEeCCcEEEEccccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEcCCCCCCC
Q 021237 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC 147 (315)
Q Consensus 87 ss~lI~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl 147 (315)
.+-|+-++|++||+|-.- .+-+ ++ |-. +.-|.+||+||+||--.|-|
T Consensus 49 daALFavnGf~iLv~Ggs-erKS-~f-wkl-----------VrHldrVdaVLLthpg~dNL 95 (934)
T KOG3592|consen 49 DAALFAVNGFNILVNGGS-ERKS-CF-WKL-----------VRHLDRVDAVLLTHPGADNL 95 (934)
T ss_pred cceeEeecceEEeecCCc-cccc-ch-HHH-----------HHHHhhhhhhhhcccccCcc
Confidence 355778899999998722 2222 11 211 22345899999999999996
No 58
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=46.58 E-value=19 Score=34.97 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=31.3
Q ss_pred ccccCCHHHHHHHHHHcCCCEEEEeecccccccchhHHHHhhcC
Q 021237 265 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEG 308 (315)
Q Consensus 265 ~~~h~~~eea~~~~~~l~~k~~ip~H~g~f~~~~~~~~~~~~~g 308 (315)
+..|.+.+|..++++.++||+++|+|...-.+..+ +.+++..|
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~-~~~a~~~g 400 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINH-TKLAEEEG 400 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHH-HHHHHHcC
Confidence 34589999999999999999999999764333333 33445555
No 59
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=37.49 E-value=25 Score=33.58 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=34.2
Q ss_pred CCCEEEE--cCCCCCCCChhcHHHhhhhCCCceEEEc----CChHHHHhhcC
Q 021237 133 QVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLF 178 (315)
Q Consensus 133 ~iD~VlI--SH~H~DHld~~tl~~l~~~~p~~~v~~~----p~~~~~l~~~~ 178 (315)
.+|+|+| +|.|..|. ...++.|++.+|+++|++. +++...|.++|
T Consensus 120 gvD~ivID~a~g~s~~~-~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG 170 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHV-IDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG 170 (352)
T ss_dssp T-SEEEEE-SSTTSHHH-HHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT
T ss_pred CCCEEEccccCccHHHH-HHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC
Confidence 6788888 89999998 7889999999988888754 34455565554
No 60
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=33.83 E-value=59 Score=31.48 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHcCCCEEEEe--ecccccc
Q 021237 268 VSGQEDAVKLAKLLHAKFIVPM--KNGDLDS 296 (315)
Q Consensus 268 h~~~eea~~~~~~l~~k~~ip~--H~g~f~~ 296 (315)
+.+|+|-++++++.+||++|++ |..-|.+
T Consensus 53 ~wDP~eWar~fK~aGAKyvilvakHHDGFaL 83 (430)
T COG3669 53 NWDPREWARLFKEAGAKYVILVAKHHDGFAL 83 (430)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeeeecCCeee
Confidence 6799999999999999999998 8888866
No 61
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.92 E-value=62 Score=30.71 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCCCEEE--EcCCCCCCCChhcHHHhhhhCCCceEEEc----CChHHHHhhcC
Q 021237 132 PQVDCLL--ITQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLF 178 (315)
Q Consensus 132 p~iD~Vl--ISH~H~DHld~~tl~~l~~~~p~~~v~~~----p~~~~~l~~~~ 178 (315)
+.+|+|+ ++|.|.++. +..++++++.+|+..+++. +++...|..+|
T Consensus 120 ~~~d~iviD~AhGhs~~~-i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG 171 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHF-VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG 171 (343)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC
Confidence 3577766 589999997 7889999998887776654 45555565554
No 62
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.49 E-value=55 Score=31.10 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=33.7
Q ss_pred CCCCEEE--EcCCCCCCCChhcHHHhhhhCCCceEEEc----CChHHHHhhcC
Q 021237 132 PQVDCLL--ITQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLF 178 (315)
Q Consensus 132 p~iD~Vl--ISH~H~DHld~~tl~~l~~~~p~~~v~~~----p~~~~~l~~~~ 178 (315)
+.+|+|+ ++|.|.++. +..++.+++.+|++.+++. +++.+.|..+|
T Consensus 121 ~g~D~iviD~AhGhs~~~-i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG 172 (346)
T PRK05096 121 PALNFICIDVANGYSEHF-VQFVAKAREAWPDKTICAGNVVTGEMVEELILSG 172 (346)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC
Confidence 3577766 589999997 7889999999988887653 44455565554
No 63
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=25.14 E-value=1.3e+02 Score=21.40 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCCEEEEeecccccccchhHHHHhhcC
Q 021237 282 HAKFIVPMKNGDLDSKGFLASIIQSEG 308 (315)
Q Consensus 282 ~~k~~ip~H~g~f~~~~~~~~~~~~~g 308 (315)
+.++++|.|-+.--..+.|..+++.++
T Consensus 38 ~~~vtVP~Hp~~dl~~Gtl~~Ilkqa~ 64 (66)
T COG1724 38 GGRVTVPFHPGEDLPPGTLRSILKQAG 64 (66)
T ss_pred CCEEEecCCCccccCcHHHHHHHHHhc
Confidence 356889999988888899999999876
No 64
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=23.01 E-value=88 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.1
Q ss_pred cccCCHHHHHHHHHHcCCCEEEEe
Q 021237 266 TLVSGQEDAVKLAKLLHAKFIVPM 289 (315)
Q Consensus 266 ~~h~~~eea~~~~~~l~~k~~ip~ 289 (315)
..|.+..|..+.++.++++.++|+
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEcc
Confidence 459999999999999999999996
No 65
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.61 E-value=1.7e+02 Score=23.92 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=49.1
Q ss_pred cEEEEEecCCceeEEEcCCCCCcccc----ccc---------c-CCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCC
Q 021237 219 NGYLVNSSQGQLTLYYEPHCVYNQNF----LEK---------E-RSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAK 284 (315)
Q Consensus 219 ~g~~i~~~~~~~~i~~sGDt~~~~~~----~~~---------~-~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k 284 (315)
.+|.+... ..||+.|+.+...- .+. . ..|++++- +|-..|... .+|+++.++.+++.++
T Consensus 45 ~~favRDk----e~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLl-GGLaMP~~g--v~~d~~kel~ee~~~k 117 (154)
T COG4090 45 LAFAVRDK----EQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLL-GGLAMPKIG--VTPDDAKELLEELGNK 117 (154)
T ss_pred HHHHhhch----heeecCCcChhHhheeeeeccceecCCccccccccEEEEE-cccccCcCC--CCHHHHHHHHHhcCCC
Confidence 36777752 57788887653311 111 2 58877765 365555333 3899999999999999
Q ss_pred EEEEeec-ccccccchhH
Q 021237 285 FIVPMKN-GDLDSKGFLA 301 (315)
Q Consensus 285 ~~ip~H~-g~f~~~~~~~ 301 (315)
.++.+-+ ..|..+++-+
T Consensus 118 kliGvCfm~mF~ragW~e 135 (154)
T COG4090 118 KLIGVCFMNMFERAGWDE 135 (154)
T ss_pred ceEEeeHHHHHHHcCcch
Confidence 8887754 4666665443
No 66
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=22.01 E-value=1.8e+02 Score=26.27 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=50.9
Q ss_pred eeEEEcCCCCCccccccc-------cCCcEEEeccCCCcCCCccc-cCCHHHHHHHH---------HHcCCCEEEEeecc
Q 021237 230 LTLYYEPHCVYNQNFLEK-------ERSDIIITPVIKQLLPKFTL-VSGQEDAVKLA---------KLLHAKFIVPMKNG 292 (315)
Q Consensus 230 ~~i~~sGDt~~~~~~~~~-------~~~Dl~i~~~~g~~~p~~~~-h~~~eea~~~~---------~~l~~k~~ip~H~g 292 (315)
.-+||-||+.|+..+..+ .++.+.-+.+.|.-.|.+.- -.+..++.+.- -+.+.+.+.|+.+|
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeec
Confidence 457888999999876543 48888888877766664321 12233332211 12245678999999
Q ss_pred cccccchhHHHHhh
Q 021237 293 DLDSKGFLASIIQS 306 (315)
Q Consensus 293 ~f~~~~~~~~~~~~ 306 (315)
..+..++.++++.-
T Consensus 227 ~iS~deL~~Ri~~v 240 (248)
T PRK13703 227 FITQDDLAKRFLNV 240 (248)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999988854
No 67
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=21.80 E-value=2.2e+02 Score=23.58 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCCCCChhcHHHhhh
Q 021237 133 QVDCLLITQSLDDHCHLKTLKPLSK 157 (315)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~l~~ 157 (315)
.-|+||++|- |+ ...++.+.+
T Consensus 11 t~DaiLV~~k--~~--~q~vK~~v~ 31 (151)
T PF01050_consen 11 TPDAILVADK--DR--SQDVKEVVE 31 (151)
T ss_pred CCCEEEEECc--HH--hhhhHHHHH
Confidence 5689999987 66 456666654
No 68
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=21.58 E-value=82 Score=26.12 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCcEEEeccCCCcCCCccccCCHHHHHHHHHHcCCCEEEEee-cccccccchhHHH
Q 021237 249 RSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK-NGDLDSKGFLASI 303 (315)
Q Consensus 249 ~~Dl~i~~~~g~~~p~~~~h~~~eea~~~~~~l~~k~~ip~H-~g~f~~~~~~~~~ 303 (315)
.+|++++- +|--.|.. ..++|++.+++.++.++.++.+- ++.|.-+++.+.+
T Consensus 80 ~~D~vVlm-GGLAMP~~--~v~~e~v~~li~ki~~~~iiGiCFms~F~kagW~~~I 132 (147)
T PF09897_consen 80 HPDVVVLM-GGLAMPKS--GVTPEDVNELIKKISPKKIIGICFMSMFEKAGWDDKI 132 (147)
T ss_dssp -EEEEEEE-GGGGSTTT--S--HHHHHHHHHHHEEEEEEEEEETTHHHHTTHHHHS
T ss_pred CCCEEEEE-cccccCCC--CCCHHHHHHHHHHhCcCCEEEEehHHHHHHcCCcccc
Confidence 58877765 36444433 45899999999999999888875 4577777776654
No 69
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=21.49 E-value=1.1e+02 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=20.2
Q ss_pred EEeCeEEEEEeCCcEEEEccccCCC
Q 021237 83 YLEGNSWLWDLDGVKVLVDPILVGN 107 (315)
Q Consensus 83 wlGhss~lI~~~g~~ILiDP~~~g~ 107 (315)
...|-..+|+.+|.+.|+|..|.+.
T Consensus 85 ~~~H~~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 85 PRTHLVLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp SEEEEEEEEEETTEEEEE-SSSTTC
T ss_pred CCceEEEEEEECCEEEEEeccCCCc
Confidence 4568999999999999999977543
Done!