Query 021238
Match_columns 315
No_of_seqs 301 out of 1942
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2.1E-22 4.6E-27 161.2 15.2 112 13-125 1-121 (121)
2 cd08376 C2B_MCTP_PRT C2 domain 99.9 5.5E-21 1.2E-25 152.0 15.2 112 15-126 1-115 (116)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 4E-21 8.6E-26 155.3 14.0 99 16-114 1-109 (126)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 2.7E-20 5.8E-25 149.3 15.1 112 15-126 1-120 (121)
5 KOG1030 Predicted Ca2+-depende 99.8 7.8E-21 1.7E-25 156.4 10.9 113 12-124 4-117 (168)
6 cd04024 C2A_Synaptotagmin-like 99.8 4.6E-20 9.9E-25 149.0 14.3 112 14-125 1-128 (128)
7 cd08379 C2D_MCTP_PRT_plant C2 99.8 3E-20 6.6E-25 149.7 13.0 99 16-114 2-111 (126)
8 cd08681 C2_fungal_Inn1p-like C 99.8 3.5E-20 7.6E-25 147.8 13.0 110 14-124 1-117 (118)
9 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.8E-20 8.3E-25 149.7 13.2 111 15-125 1-125 (127)
10 cd08377 C2C_MCTP_PRT C2 domain 99.8 1E-19 2.2E-24 145.2 15.4 111 14-124 1-117 (119)
11 cd08677 C2A_Synaptotagmin-13 C 99.8 2E-20 4.4E-25 148.0 11.1 102 8-112 8-118 (118)
12 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.6E-20 2.1E-24 146.2 14.5 109 16-124 2-120 (121)
13 cd08375 C2_Intersectin C2 doma 99.8 1.5E-19 3.2E-24 148.0 15.7 116 10-125 11-135 (136)
14 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.7E-19 3.7E-24 150.0 15.2 112 15-126 1-132 (150)
15 cd04046 C2_Calpain C2 domain p 99.8 3.5E-19 7.7E-24 143.9 16.2 114 12-126 1-122 (126)
16 cd08678 C2_C21orf25-like C2 do 99.8 1.8E-19 3.9E-24 145.6 14.4 110 16-127 1-121 (126)
17 cd04036 C2_cPLA2 C2 domain pre 99.8 1.5E-19 3.2E-24 144.6 13.6 110 16-126 2-118 (119)
18 cd08395 C2C_Munc13 C2 domain t 99.8 1.2E-19 2.6E-24 145.1 12.3 99 15-114 1-112 (120)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 2.8E-19 6E-24 143.5 14.4 109 16-124 2-120 (121)
20 cd08381 C2B_PI3K_class_II C2 d 99.8 1.2E-19 2.6E-24 145.9 12.3 99 13-112 12-121 (122)
21 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.1E-19 6.8E-24 143.5 14.4 100 15-114 1-103 (123)
22 cd08391 C2A_C2C_Synaptotagmin_ 99.8 4.1E-19 9E-24 141.9 14.6 111 14-125 1-121 (121)
23 cd04027 C2B_Munc13 C2 domain s 99.8 3.8E-19 8.2E-24 143.9 14.1 102 15-116 2-114 (127)
24 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3.9E-19 8.4E-24 144.8 13.6 111 15-125 1-132 (133)
25 cd08393 C2A_SLP-1_2 C2 domain 99.8 2E-19 4.4E-24 145.1 11.7 104 10-113 11-125 (125)
26 cd04028 C2B_RIM1alpha C2 domai 99.8 4E-19 8.6E-24 146.6 13.4 103 13-115 28-139 (146)
27 cd04029 C2A_SLP-4_5 C2 domain 99.8 4.4E-19 9.5E-24 143.2 12.2 104 10-113 11-125 (125)
28 cd08378 C2B_MCTP_PRT_plant C2 99.8 8.5E-19 1.8E-23 140.7 13.1 105 15-124 1-118 (121)
29 cd08387 C2A_Synaptotagmin-8 C2 99.8 6.7E-19 1.5E-23 141.7 12.4 104 10-113 12-123 (124)
30 cd04043 C2_Munc13_fungal C2 do 99.8 2E-18 4.3E-23 139.3 14.9 113 14-127 1-122 (126)
31 cd04015 C2_plant_PLD C2 domain 99.8 2.4E-18 5.2E-23 144.4 15.9 112 13-125 6-157 (158)
32 cd08392 C2A_SLP-3 C2 domain fi 99.8 7E-19 1.5E-23 142.5 12.0 104 10-113 11-128 (128)
33 cd08400 C2_Ras_p21A1 C2 domain 99.8 4E-18 8.8E-23 137.7 16.3 111 13-127 3-124 (126)
34 cd08394 C2A_Munc13 C2 domain f 99.8 1.8E-18 3.8E-23 138.4 13.6 105 13-122 1-113 (127)
35 cd04014 C2_PKC_epsilon C2 doma 99.8 3.7E-18 8.1E-23 139.0 15.9 113 13-127 3-130 (132)
36 cd04031 C2A_RIM1alpha C2 domai 99.8 9E-19 2E-23 140.9 12.1 104 10-113 12-125 (125)
37 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.2E-18 2.5E-23 140.3 12.7 104 10-113 12-123 (124)
38 cd04017 C2D_Ferlin C2 domain f 99.8 2.8E-18 6E-23 140.3 15.0 114 14-127 1-133 (135)
39 cd08680 C2_Kibra C2 domain fou 99.8 8.8E-19 1.9E-23 141.0 11.6 104 9-112 9-124 (124)
40 cd04041 C2A_fungal C2 domain f 99.8 6.6E-19 1.4E-23 139.2 10.3 99 14-113 1-107 (111)
41 cd08688 C2_KIAA0528-like C2 do 99.8 1.5E-18 3.3E-23 136.9 11.5 98 16-113 1-108 (110)
42 cd08388 C2A_Synaptotagmin-4-11 99.8 2.4E-18 5.2E-23 139.4 12.5 106 9-114 11-128 (128)
43 cd04010 C2B_RasA3 C2 domain se 99.8 1.2E-18 2.7E-23 144.3 11.0 100 15-116 1-124 (148)
44 cd04050 C2B_Synaptotagmin-like 99.8 2.7E-18 5.7E-23 134.3 12.3 97 15-114 1-102 (105)
45 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.9E-18 8.6E-23 137.3 13.1 105 10-114 12-125 (125)
46 cd08685 C2_RGS-like C2 domain 99.8 3.4E-18 7.3E-23 136.8 12.0 100 12-112 10-119 (119)
47 cd08382 C2_Smurf-like C2 domai 99.8 1E-17 2.2E-22 134.8 14.4 99 15-114 1-105 (123)
48 cd04039 C2_PSD C2 domain prese 99.8 4.2E-18 9.2E-23 133.9 11.8 89 14-102 1-95 (108)
49 cd08389 C2A_Synaptotagmin-14_1 99.8 4.8E-18 1E-22 136.9 12.3 105 9-114 11-124 (124)
50 cd04044 C2A_Tricalbin-like C2 99.8 7.8E-18 1.7E-22 135.1 13.3 114 14-127 2-124 (124)
51 cd04030 C2C_KIAA1228 C2 domain 99.8 5.5E-18 1.2E-22 136.8 12.3 104 10-113 12-127 (127)
52 cd04045 C2C_Tricalbin-like C2 99.8 1.3E-17 2.9E-22 133.6 14.2 101 14-114 1-103 (120)
53 cd08521 C2A_SLP C2 domain firs 99.8 7.1E-18 1.5E-22 135.3 12.4 103 10-112 10-123 (123)
54 cd08384 C2B_Rabphilin_Doc2 C2 99.8 1.3E-18 2.9E-23 141.7 8.0 109 9-117 8-124 (133)
55 cd08406 C2B_Synaptotagmin-12 C 99.8 2.7E-18 5.7E-23 140.5 9.6 107 9-115 10-124 (136)
56 cd08390 C2A_Synaptotagmin-15-1 99.8 8.8E-18 1.9E-22 134.8 12.4 105 10-114 10-123 (123)
57 cd04049 C2_putative_Elicitor-r 99.8 1.8E-17 3.9E-22 133.4 13.8 102 14-115 1-109 (124)
58 cd08676 C2A_Munc13-like C2 dom 99.8 1.1E-17 2.4E-22 139.1 12.4 100 9-112 23-153 (153)
59 cd08404 C2B_Synaptotagmin-4 C2 99.8 4.5E-18 9.7E-23 139.2 9.5 110 10-119 11-128 (136)
60 cd04011 C2B_Ferlin C2 domain s 99.7 1.6E-17 3.5E-22 131.1 12.0 99 12-114 2-110 (111)
61 cd04032 C2_Perforin C2 domain 99.7 1.9E-17 4.1E-22 133.6 12.5 93 10-103 24-118 (127)
62 cd04038 C2_ArfGAP C2 domain pr 99.7 4E-17 8.6E-22 134.9 14.6 89 14-103 2-90 (145)
63 cd04051 C2_SRC2_like C2 domain 99.7 1.9E-17 4.1E-22 133.4 11.6 110 15-124 1-124 (125)
64 cd08373 C2A_Ferlin C2 domain f 99.7 5.9E-17 1.3E-21 130.9 14.4 107 20-128 2-118 (127)
65 cd08407 C2B_Synaptotagmin-13 C 99.7 7.8E-18 1.7E-22 137.8 9.2 105 9-113 10-124 (138)
66 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2E-17 4.4E-22 139.3 11.9 104 11-114 24-138 (162)
67 cd04018 C2C_Ferlin C2 domain t 99.7 3.3E-17 7.1E-22 136.1 12.4 88 15-102 1-104 (151)
68 cd08402 C2B_Synaptotagmin-1 C2 99.7 6.5E-18 1.4E-22 138.2 8.1 107 8-114 9-123 (136)
69 cd04040 C2D_Tricalbin-like C2 99.7 5.6E-17 1.2E-21 128.6 12.4 102 16-117 1-106 (115)
70 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.4E-17 2.9E-22 136.0 8.4 110 9-118 9-126 (134)
71 cd08675 C2B_RasGAP C2 domain s 99.7 4.3E-17 9.4E-22 133.6 11.2 99 16-115 1-121 (137)
72 KOG0696 Serine/threonine prote 99.7 2.7E-18 5.8E-23 158.9 4.0 103 12-114 178-288 (683)
73 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.6E-17 3.5E-22 135.9 8.0 109 9-117 10-126 (136)
74 cd04009 C2B_Munc13-like C2 dom 99.7 6.3E-17 1.4E-21 132.0 11.4 94 10-103 12-117 (133)
75 cd08410 C2B_Synaptotagmin-17 C 99.7 3.7E-17 8E-22 133.7 9.7 110 9-118 9-127 (135)
76 cd08692 C2B_Tac2-N C2 domain s 99.7 4.4E-17 9.5E-22 132.1 9.6 107 7-113 7-122 (135)
77 KOG1032 Uncharacterized conser 99.7 8E-18 1.7E-22 166.3 5.9 103 165-283 109-214 (590)
78 cd08408 C2B_Synaptotagmin-14_1 99.7 3.7E-17 8.1E-22 134.1 8.6 110 8-117 9-128 (138)
79 cd08690 C2_Freud-1 C2 domain f 99.7 7.4E-16 1.6E-20 128.2 15.5 115 14-128 4-139 (155)
80 cd08383 C2A_RasGAP C2 domain ( 99.7 4.9E-16 1.1E-20 123.4 13.5 105 16-124 2-116 (117)
81 cd08691 C2_NEDL1-like C2 domai 99.7 5.7E-16 1.2E-20 126.7 14.2 99 15-115 2-122 (137)
82 cd04026 C2_PKC_alpha_gamma C2 99.7 2.5E-16 5.4E-21 127.9 11.7 105 14-118 13-126 (131)
83 cd04048 C2A_Copine C2 domain f 99.7 2.2E-16 4.7E-21 126.4 11.0 96 19-114 5-114 (120)
84 cd04037 C2E_Ferlin C2 domain f 99.7 3.2E-16 6.9E-21 126.3 11.7 89 15-103 1-92 (124)
85 PF02893 GRAM: GRAM domain; I 99.7 5.7E-17 1.2E-21 117.0 6.1 67 163-229 1-69 (69)
86 cd00276 C2B_Synaptotagmin C2 d 99.7 1E-16 2.2E-21 130.4 8.2 109 10-118 10-126 (134)
87 cd04021 C2_E3_ubiquitin_ligase 99.7 1.5E-15 3.3E-20 122.5 14.0 97 15-113 3-107 (125)
88 KOG1028 Ca2+-dependent phospho 99.7 1.6E-15 3.6E-20 145.6 16.4 165 10-185 163-342 (421)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1.4E-15 3E-20 122.2 12.5 102 10-112 11-121 (123)
90 cd08409 C2B_Synaptotagmin-15 C 99.7 4.4E-16 9.4E-21 127.7 9.0 104 9-113 10-123 (137)
91 cd08686 C2_ABR C2 domain in th 99.6 2.2E-15 4.7E-20 119.1 11.5 80 16-101 1-92 (118)
92 cd04013 C2_SynGAP_like C2 doma 99.6 6.8E-15 1.5E-19 121.2 14.6 99 11-114 8-113 (146)
93 cd04047 C2B_Copine C2 domain s 99.6 1.7E-15 3.6E-20 119.2 10.4 95 17-112 3-108 (110)
94 cd00275 C2_PLC_like C2 domain 99.6 1.2E-14 2.6E-19 117.2 14.7 102 14-117 2-113 (128)
95 PLN03008 Phospholipase D delta 99.6 3.6E-15 7.8E-20 149.8 13.8 119 12-131 12-182 (868)
96 cd04052 C2B_Tricalbin-like C2 99.6 5.7E-15 1.2E-19 116.6 11.7 96 31-127 9-110 (111)
97 KOG1011 Neurotransmitter relea 99.6 1.6E-15 3.5E-20 145.9 8.7 118 9-126 290-424 (1283)
98 smart00568 GRAM domain in gluc 99.6 7.1E-15 1.5E-19 103.4 6.2 59 170-228 1-60 (61)
99 PLN03200 cellulose synthase-in 99.6 1.3E-14 2.9E-19 157.6 11.2 112 12-126 1978-2100(2102)
100 PF00168 C2: C2 domain; Inter 99.5 1.7E-13 3.8E-18 101.5 10.6 81 16-96 1-85 (85)
101 cd00030 C2 C2 domain. The C2 d 99.4 4.2E-12 9E-17 95.8 11.1 97 16-112 1-102 (102)
102 smart00239 C2 Protein kinase C 99.4 8.6E-12 1.9E-16 94.6 11.3 89 16-104 2-94 (101)
103 KOG2059 Ras GTPase-activating 99.4 2.2E-12 4.7E-17 125.9 9.1 115 14-129 5-128 (800)
104 KOG1028 Ca2+-dependent phospho 99.4 1.8E-12 3.9E-17 124.7 8.3 105 8-112 292-404 (421)
105 cd08374 C2F_Ferlin C2 domain s 99.3 2.8E-11 6E-16 98.1 10.5 89 15-103 1-122 (133)
106 PLN02223 phosphoinositide phos 99.3 3.5E-11 7.6E-16 116.8 12.8 105 13-118 408-523 (537)
107 COG5038 Ca2+-dependent lipid-b 99.2 6.4E-11 1.4E-15 121.5 10.1 108 9-116 1035-1146(1227)
108 PLN02952 phosphoinositide phos 99.2 1.5E-10 3.2E-15 114.6 12.3 105 13-118 469-585 (599)
109 PLN02270 phospholipase D alpha 99.1 5.4E-10 1.2E-14 112.8 13.8 119 12-131 6-153 (808)
110 COG5038 Ca2+-dependent lipid-b 99.1 2.5E-10 5.4E-15 117.3 10.8 126 3-128 425-559 (1227)
111 PLN02230 phosphoinositide phos 99.1 3.3E-10 7.3E-15 111.9 11.4 105 13-118 468-584 (598)
112 KOG1328 Synaptic vesicle prote 99.1 1.8E-11 4E-16 119.6 2.2 93 10-102 943-1047(1103)
113 KOG1328 Synaptic vesicle prote 99.1 1.6E-11 3.5E-16 120.0 1.3 117 11-127 111-302 (1103)
114 cd08689 C2_fungal_Pkc1p C2 dom 99.1 6.1E-10 1.3E-14 85.5 8.4 82 16-102 1-86 (109)
115 PLN02222 phosphoinositide phos 99.1 1.8E-09 3.9E-14 106.6 13.5 105 13-118 451-567 (581)
116 KOG0169 Phosphoinositide-speci 99.1 5E-10 1.1E-14 111.1 9.3 104 15-119 617-731 (746)
117 PLN02228 Phosphoinositide phos 99.0 3.4E-09 7.3E-14 104.4 14.0 105 13-118 430-547 (567)
118 KOG1031 Predicted Ca2+-depende 98.9 5.7E-09 1.2E-13 100.4 8.2 112 14-125 3-135 (1169)
119 KOG1264 Phospholipase C [Lipid 98.7 5.2E-08 1.1E-12 96.9 10.1 99 13-113 1064-1170(1267)
120 KOG1326 Membrane-associated pr 98.7 1.2E-08 2.6E-13 103.4 4.0 97 5-101 603-703 (1105)
121 KOG1032 Uncharacterized conser 98.6 1.2E-07 2.5E-12 94.6 8.7 276 3-282 86-372 (590)
122 KOG2059 Ras GTPase-activating 98.6 1.7E-07 3.7E-12 92.3 8.6 105 21-126 138-276 (800)
123 KOG4347 GTPase-activating prot 98.6 3.8E-08 8.1E-13 96.2 3.6 108 157-283 5-116 (671)
124 PLN02352 phospholipase D epsil 98.5 1.3E-06 2.8E-11 88.4 12.2 112 12-131 8-135 (758)
125 KOG1327 Copine [Signal transdu 98.4 7.2E-07 1.6E-11 86.5 7.5 175 26-211 2-220 (529)
126 KOG1013 Synaptic vesicle prote 98.3 4.7E-07 1E-11 82.3 4.7 101 10-110 229-337 (362)
127 KOG0905 Phosphoinositide 3-kin 98.3 8.2E-07 1.8E-11 91.6 4.8 103 12-114 1522-1635(1639)
128 KOG1011 Neurotransmitter relea 98.1 9E-06 2E-10 79.6 8.9 101 13-114 1124-1237(1283)
129 cd08683 C2_C2cd3 C2 domain fou 97.9 2.6E-05 5.6E-10 62.1 5.5 97 16-112 1-143 (143)
130 cd08684 C2A_Tac2-N C2 domain f 97.8 2.4E-05 5.2E-10 58.1 4.2 93 17-111 2-102 (103)
131 KOG1327 Copine [Signal transdu 97.8 3.8E-05 8.3E-10 74.7 5.7 83 20-103 142-235 (529)
132 KOG2060 Rab3 effector RIM1 and 97.7 1.9E-05 4E-10 73.1 3.2 103 12-114 267-379 (405)
133 KOG1013 Synaptic vesicle prote 97.7 4.8E-06 1E-10 75.8 -0.8 93 12-104 91-192 (362)
134 KOG1326 Membrane-associated pr 97.7 5.2E-06 1.1E-10 84.8 -0.9 105 9-113 201-316 (1105)
135 PLN02964 phosphatidylserine de 97.7 7.7E-05 1.7E-09 75.1 6.6 83 13-102 53-137 (644)
136 PF14844 PH_BEACH: PH domain a 97.3 0.00041 8.9E-09 54.0 5.3 88 177-277 2-105 (106)
137 PF14470 bPH_3: Bacterial PH d 97.3 0.0071 1.5E-07 45.7 11.8 89 171-277 1-91 (96)
138 KOG1265 Phospholipase C [Lipid 96.4 0.0065 1.4E-07 62.1 6.2 93 13-114 702-805 (1189)
139 cd08693 C2_PI3K_class_I_beta_d 96.3 0.045 9.7E-07 46.5 10.1 86 15-102 9-120 (173)
140 cd08398 C2_PI3K_class_I_alpha 96.3 0.049 1.1E-06 45.5 10.1 85 14-102 8-106 (158)
141 KOG3837 Uncharacterized conser 96.0 0.0085 1.8E-07 56.6 4.4 114 13-126 366-503 (523)
142 cd08380 C2_PI3K_like C2 domain 95.9 0.071 1.5E-06 44.3 9.3 87 15-102 9-107 (156)
143 cd08397 C2_PI3K_class_III C2 d 95.8 0.058 1.3E-06 45.2 8.1 70 33-102 28-107 (159)
144 cd04012 C2A_PI3K_class_II C2 d 95.5 0.078 1.7E-06 44.9 8.2 90 13-102 7-119 (171)
145 PF15627 CEP76-C2: CEP76 C2 do 95.4 0.27 5.9E-06 40.8 10.8 93 10-102 5-115 (156)
146 cd08687 C2_PKN-like C2 domain 95.4 0.26 5.7E-06 37.1 9.5 85 33-125 7-92 (98)
147 PF12416 DUF3668: Cep120 prote 95.3 0.37 8E-06 45.3 12.5 110 16-128 2-134 (340)
148 PF07289 DUF1448: Protein of u 95.1 0.17 3.7E-06 47.1 9.5 101 170-286 150-256 (339)
149 KOG1452 Predicted Rho GTPase-a 94.6 0.097 2.1E-06 48.0 6.5 112 11-124 48-165 (442)
150 cd08399 C2_PI3K_class_I_gamma 94.6 0.39 8.4E-06 41.0 9.8 87 15-102 11-122 (178)
151 PF00792 PI3K_C2: Phosphoinosi 93.9 0.38 8.3E-06 39.3 8.1 54 49-102 23-85 (142)
152 PF11605 Vps36_ESCRT-II: Vacuo 93.5 0.51 1.1E-05 35.5 7.5 48 193-241 38-85 (89)
153 PF06115 DUF956: Domain of unk 92.4 0.75 1.6E-05 36.2 7.1 69 186-270 18-88 (118)
154 smart00142 PI3K_C2 Phosphoinos 92.0 1.3 2.8E-05 33.9 8.2 70 16-85 13-92 (100)
155 cd01201 Neurobeachin Neurobeac 91.9 0.37 8.1E-06 37.4 4.9 88 176-279 2-104 (108)
156 PF10358 NT-C2: N-terminal C2 91.9 5.7 0.00012 32.0 13.2 112 12-127 5-136 (143)
157 PF08567 TFIIH_BTF_p62_N: TFII 90.7 1.8 3.9E-05 31.7 7.4 63 193-265 14-78 (79)
158 PF14429 DOCK-C2: C2 domain in 88.6 1.8 3.9E-05 36.9 7.1 54 48-101 61-120 (184)
159 cd08694 C2_Dock-A C2 domains f 88.6 6 0.00013 34.2 10.1 55 47-101 54-115 (196)
160 cd08695 C2_Dock-B C2 domains f 88.1 5.4 0.00012 34.3 9.5 55 47-101 54-113 (189)
161 COG4687 Uncharacterized protei 87.0 1.2 2.6E-05 34.6 4.3 63 191-269 23-86 (122)
162 PF15625 CC2D2AN-C2: CC2D2A N- 86.1 9.6 0.00021 32.1 9.9 68 34-102 36-106 (168)
163 PF07289 DUF1448: Protein of u 85.5 8.1 0.00018 36.2 9.8 92 192-296 42-141 (339)
164 PF11696 DUF3292: Protein of u 82.7 3.3 7.1E-05 41.9 6.4 82 181-280 521-634 (642)
165 smart00683 DM16 Repeats in sea 82.5 6.1 0.00013 26.8 5.7 34 193-227 21-54 (55)
166 cd08679 C2_DOCK180_related C2 79.0 5.8 0.00013 33.6 6.0 53 49-101 55-115 (178)
167 KOG4471 Phosphatidylinositol 3 77.4 9.8 0.00021 38.2 7.6 100 165-279 30-134 (717)
168 cd08696 C2_Dock-C C2 domains f 77.1 11 0.00023 32.2 7.0 55 47-101 55-118 (179)
169 KOG0694 Serine/threonine prote 77.1 0.78 1.7E-05 46.4 0.0 92 33-126 26-121 (694)
170 cd08697 C2_Dock-D C2 domains f 74.8 14 0.0003 31.7 7.1 55 47-101 57-123 (185)
171 KOG1329 Phospholipase D1 [Lipi 74.4 6.3 0.00014 41.3 5.6 79 35-113 138-220 (887)
172 PF11618 DUF3250: Protein of u 70.7 12 0.00025 29.2 5.2 63 38-102 2-73 (107)
173 cd04009 C2B_Munc13-like C2 dom 64.0 21 0.00045 28.4 5.7 78 155-232 30-126 (133)
174 KOG4269 Rac GTPase-activating 62.7 6.7 0.00014 41.1 3.0 98 8-111 753-865 (1112)
175 PF06713 bPH_4: Bacterial PH d 59.5 62 0.0013 23.1 7.8 62 198-279 6-72 (74)
176 PF12068 DUF3548: Domain of un 55.0 19 0.00041 31.6 4.2 33 212-244 111-143 (213)
177 cd08385 C2A_Synaptotagmin-1-5- 54.5 52 0.0011 25.5 6.4 71 153-223 28-111 (124)
178 PF07162 B9-C2: Ciliary basal 51.7 1.4E+02 0.0031 24.9 10.4 79 16-100 4-102 (168)
179 cd04020 C2B_SLP_1-2-3-4 C2 dom 51.1 55 0.0012 27.1 6.3 73 117-189 2-83 (162)
180 cd08387 C2A_Synaptotagmin-8 C2 50.5 46 0.001 25.8 5.5 36 152-187 27-68 (124)
181 PF08512 Rtt106: Histone chape 50.1 1.1E+02 0.0023 23.0 8.4 72 192-282 12-86 (95)
182 cd08386 C2A_Synaptotagmin-7 C2 47.5 68 0.0015 24.8 6.1 69 155-223 30-112 (125)
183 PF04386 SspB: Stringent starv 46.6 38 0.00083 28.1 4.6 36 193-228 67-102 (155)
184 PF03703 bPH_2: Bacterial PH d 40.6 1.2E+02 0.0027 21.0 7.2 49 195-244 6-58 (80)
185 PF04283 CheF-arch: Chemotaxis 39.5 37 0.00081 30.0 3.7 33 192-228 27-59 (221)
186 PRK11798 ClpXP protease specif 34.7 31 0.00067 28.1 2.2 36 193-228 59-94 (138)
187 KOG2419 Phosphatidylserine dec 34.2 8.8 0.00019 38.9 -1.2 77 13-90 279-361 (975)
188 PTZ00447 apical membrane antig 33.2 4.4E+02 0.0094 25.1 11.1 109 13-128 57-173 (508)
189 PF02392 Ycf4: Ycf4; InterPro 31.1 96 0.0021 26.4 4.6 39 204-242 102-144 (180)
190 CHL00036 ycf4 photosystem I as 29.6 96 0.0021 26.5 4.3 42 201-242 101-147 (184)
191 PRK02542 photosystem I assembl 29.1 98 0.0021 26.5 4.4 40 203-242 108-151 (188)
192 PF13082 DUF3931: Protein of u 28.6 66 0.0014 21.4 2.5 15 258-272 31-45 (66)
193 PF03517 Voldacs: Regulator of 28.6 1.4E+02 0.003 24.0 5.1 49 193-242 1-52 (135)
194 cd08406 C2B_Synaptotagmin-12 C 28.3 1.2E+02 0.0026 24.3 4.7 24 151-174 25-48 (136)
195 PF06219 DUF1005: Protein of u 28.0 4.6E+02 0.01 25.6 9.0 95 34-128 35-169 (460)
196 KOG0904 Phosphatidylinositol 3 26.6 2.5E+02 0.0054 30.1 7.4 66 15-83 344-421 (1076)
197 PF14909 SPATA6: Spermatogenes 26.4 3.6E+02 0.0078 22.0 8.4 84 15-102 3-99 (140)
198 TIGR02888 spore_YlmC_YmxH spor 26.3 40 0.00086 24.4 1.3 16 210-225 52-67 (76)
199 cd04048 C2A_Copine C2 domain f 26.1 1.6E+02 0.0034 22.6 4.9 77 148-224 7-102 (120)
200 KOG0122 Translation initiation 24.5 63 0.0014 29.0 2.5 22 259-280 230-251 (270)
201 PF01060 DUF290: Transthyretin 22.1 1.4E+02 0.003 21.5 3.6 26 73-98 11-36 (80)
202 PHA02150 hypothetical protein 20.9 33 0.00071 24.0 0.0 47 165-211 23-70 (77)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=2.1e-22 Score=161.25 Aligned_cols=112 Identities=19% Similarity=0.278 Sum_probs=98.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccC-CCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~-tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~ 91 (315)
.|.|.|+|++|++|+..+ .|++||||++.++....+|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 479999999999998888 799999999999999999999876 799999999999997656789999999999999999
Q ss_pred eEEEEEEccc-C--CCcccEEEEccC-----CCceEEEEEEe
Q 021238 92 LGSVIVTVES-E--GQTGAVWYTLDS-----PSGQVCLHIKT 125 (315)
Q Consensus 92 iG~~~i~l~~-l--~~~~~~w~~L~~-----~~G~i~~~l~~ 125 (315)
||++.+++.. + +...+.|++|.+ +.|+|++++.+
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999964 4 455789999975 34888888764
No 2
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.87 E-value=5.5e-21 Score=152.00 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=101.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCceeE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~iG 93 (315)
.|+|+|++|++|+..+..+.+||||+++++....+|+++++++||.|||+|.|.+.+. ...|.|+|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999999999999999999998889999999999999999999998764 678999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCceEEEEEEee
Q 021238 94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI 126 (315)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~~~l~~~ 126 (315)
++.++|+++ +.....|++|.+..|++++.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence 999999986 455678999998789998887753
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=4e-21 Score=155.27 Aligned_cols=99 Identities=25% Similarity=0.494 Sum_probs=89.9
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC------CCcEEEEEEEecCCCCCC
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS 89 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~------~~~~L~~~V~d~d~~~~d 89 (315)
++|+|++|+||++++..|.+||||++.++..+.+|+++++++||.|||+|.|.+.. ....|.|.|||++..++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999999999999999999889999999999999999999999865 366799999999999899
Q ss_pred ceeEEEEEEcccCC----CcccEEEEccC
Q 021238 90 TVLGSVIVTVESEG----QTGAVWYTLDS 114 (315)
Q Consensus 90 d~iG~~~i~l~~l~----~~~~~w~~L~~ 114 (315)
++||++.++|.++. .....|++|.+
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999863 34678999974
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=2.7e-20 Score=149.32 Aligned_cols=112 Identities=22% Similarity=0.460 Sum_probs=98.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (315)
.|+|+|++|++|+..|..|.+||||++.++. ...+|+++.+++||.|||+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3799999999999999999999999999976 567999999999999999999999776788999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-----CceEEEEEEee
Q 021238 94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI 126 (315)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-----~G~i~~~l~~~ 126 (315)
.+.+++.++ +.....|++|.++ .|++++.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999997 4566789999632 37777777654
No 5
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.85 E-value=7.8e-21 Score=156.44 Aligned_cols=113 Identities=24% Similarity=0.402 Sum_probs=98.3
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~ 91 (315)
..|.|+|.|++|.+|..+|+.+++||||++.+++++.+|+++.+++||.|||.|+|.+.++...|+++|||+|.++.|||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 46899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcccCCCcccEEE-EccCCCceEEEEEE
Q 021238 92 LGSVIVTVESEGQTGAVWY-TLDSPSGQVCLHIK 124 (315)
Q Consensus 92 iG~~~i~l~~l~~~~~~w~-~L~~~~G~i~~~l~ 124 (315)
+|+|+|+|..+-.....|+ ......|....++.
T Consensus 84 mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~ 117 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVL 117 (168)
T ss_pred cceeeeccHHHHHHhhhhccccccCCCcEeeEEE
Confidence 9999999999755555555 22223455444333
No 6
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.84 E-value=4.6e-20 Score=149.05 Aligned_cols=112 Identities=24% Similarity=0.427 Sum_probs=98.9
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCc
Q 021238 14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd 90 (315)
|.|+|+|++|++|+..+. .+.+||||++.++....+|++++++.||.|||.|.|.+.+ ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999998 8999999999999888999999999999999999999976 5778999999999988999
Q ss_pred eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEe
Q 021238 91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT 125 (315)
Q Consensus 91 ~iG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~~~l~~ 125 (315)
+||++.+++.++. .....|++|.++ .|+++++++|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999863 335789999754 5777776654
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=3e-20 Score=149.75 Aligned_cols=99 Identities=21% Similarity=0.359 Sum_probs=90.1
Q ss_pred EEEEEEEeec---CCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC-----
Q 021238 16 IKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----- 87 (315)
Q Consensus 16 L~V~Ii~A~~---L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~----- 87 (315)
|.|+|++|++ |..+|..|.+||||+++++..+.||+++.+++||.|||+|.|.+.+....|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 88899999999999999999999999999999999999999999776779999999999874
Q ss_pred -CCceeEEEEEEcccCC--CcccEEEEccC
Q 021238 88 -KSTVLGSVIVTVESEG--QTGAVWYTLDS 114 (315)
Q Consensus 88 -~dd~iG~~~i~l~~l~--~~~~~w~~L~~ 114 (315)
+|++||++.++|.++. .....|++|..
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 8999999999999973 44568999973
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=3.5e-20 Score=147.82 Aligned_cols=110 Identities=24% Similarity=0.398 Sum_probs=95.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCce
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~ 91 (315)
|.|.|+|++|++|++.+..+.+||||++.++....+|+++. +++||.|||.|.|.+.. ..+.|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 67999999999999999999999999999988888999886 47999999999999975 4578999999999876 899
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 021238 92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK 124 (315)
Q Consensus 92 iG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~~~l~ 124 (315)
||++.+++.++ +.....|++|..+ .|+|+++++
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~ 117 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence 99999999986 4456899999753 466666665
No 9
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=3.8e-20 Score=149.69 Aligned_cols=111 Identities=21% Similarity=0.359 Sum_probs=95.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC----CcEEEEEEEecCCCC-CC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS 89 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~----~~~L~~~V~d~d~~~-~d 89 (315)
+|+|+|++|++|.+.+..|.+||||+++++...++|+++.++.||.|||.|.|.+.++ ...|.|+|||++.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 4899999999999999999999999999998899999999999999999999998642 357999999999886 89
Q ss_pred ceeEEEEEEcccCC---CcccEEEEccCC------CceEEEEEEe
Q 021238 90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT 125 (315)
Q Consensus 90 d~iG~~~i~l~~l~---~~~~~w~~L~~~------~G~i~~~l~~ 125 (315)
++||++.+++.++. .....|++|+.+ .|++.+++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999863 445789999853 4666666543
No 10
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.84 E-value=1e-19 Score=145.21 Aligned_cols=111 Identities=23% Similarity=0.465 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (315)
|.|.|+|++|++|+..+..+.+||||++++.....+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 67999999999999999999999999999988888999999999999999999999776789999999999888999999
Q ss_pred EEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 021238 94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (315)
Q Consensus 94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~~~l~ 124 (315)
++.+++.++......|++|.++ .|++.+++.
T Consensus 81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEE
Confidence 9999999987677899999642 466665554
No 11
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.84 E-value=2e-20 Score=148.04 Aligned_cols=102 Identities=17% Similarity=0.246 Sum_probs=87.7
Q ss_pred CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC----EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
.+.+..+.|+|+|++|++|+ . .|.+||||++++.. .+.+|++.++|+||.|||+|.|++.. ....|.|.|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 34567899999999999998 3 46799999999942 46699999999999999999999864 366799999
Q ss_pred EecCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (315)
||+|+++++++||++.++++++ +.+..+|..|
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999975 6667778664
No 12
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=9.6e-20 Score=146.21 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=94.1
Q ss_pred EEEEEEEeecCCCCC-CCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238 16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (315)
|+|+|++|+||++++ ..|.+||||.+.++.. ..+|+++++|+||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999974 4678999999999754 56999999999999999999999876678999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 021238 94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK 124 (315)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~~~l~ 124 (315)
.+.++++++ ....+.|++|++. .|++++++.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999998 3455789999863 477766654
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=1.5e-19 Score=148.03 Aligned_cols=116 Identities=22% Similarity=0.412 Sum_probs=100.5
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCC
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWK 88 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~ 88 (315)
....|.|+|+|++|++|++.|..|.+||||++.++....+|+++++++||.|||+|.|.+.+. ...|.|+|||+|..++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 356799999999999999999999999999999999899999999999999999999999653 5679999999999999
Q ss_pred CceeEEEEEEcccCCC-------cccEEEEccC-CCceEEEEEEe
Q 021238 89 STVLGSVIVTVESEGQ-------TGAVWYTLDS-PSGQVCLHIKT 125 (315)
Q Consensus 89 dd~iG~~~i~l~~l~~-------~~~~w~~L~~-~~G~i~~~l~~ 125 (315)
|++||++.+++.++.. ....|..|.. ..|++++++++
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999988622 2335667753 45999888875
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=1.7e-19 Score=150.04 Aligned_cols=112 Identities=17% Similarity=0.339 Sum_probs=97.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccC-CCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCcee
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL 92 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~-tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~i 92 (315)
.|.|+|++|++|+++|.+|.+||||++.++....+|+++.+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999998889999876 69999999999999653 46899999999988889999
Q ss_pred EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEee
Q 021238 93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI 126 (315)
Q Consensus 93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~~~l~~~ 126 (315)
|++.++|.++. .....|++|..+. |++++++.+.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 99999999873 2357899997532 6777777765
No 15
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.83 E-value=3.5e-19 Score=143.91 Aligned_cols=114 Identities=16% Similarity=0.309 Sum_probs=99.6
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~ 91 (315)
+...|+|+|++|++|...|..|.+||||++.++....+|++++++.||.|||.|.|.+.+....|.|+|||++.. .|++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 357899999999999999999999999999999889999999999999999999999877788999999999877 5899
Q ss_pred eEEEEEEcccCCCcccEEEEccC--------CCceEEEEEEee
Q 021238 92 LGSVIVTVESEGQTGAVWYTLDS--------PSGQVCLHIKTI 126 (315)
Q Consensus 92 iG~~~i~l~~l~~~~~~w~~L~~--------~~G~i~~~l~~~ 126 (315)
||.+.+++.+.......|++|.. ..|.+.+++.+.
T Consensus 80 lG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 80 LGQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred eEEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 99999999987777778999952 236666666544
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.83 E-value=1.8e-19 Score=145.59 Aligned_cols=110 Identities=23% Similarity=0.421 Sum_probs=94.3
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEEC--CEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCG--SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (315)
|.|+|++|++|+. ..|.+||||+++++ ....+|+++.+++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999988 67999999999996 3567999999999999999999999766778999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeec
Q 021238 94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (315)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~ 127 (315)
++.+++.++ ......|++|.++ .|++.+++.+..
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999996 3456789999754 466666666643
No 17
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.5e-19 Score=144.57 Aligned_cols=110 Identities=23% Similarity=0.373 Sum_probs=95.6
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCce
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~ 91 (315)
|+|+|++|++|+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.|+|||+|.. ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999999989999999999984 3567999999999999999999998653 55799999999988 8999
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEee
Q 021238 92 LGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI 126 (315)
Q Consensus 92 iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~~~l~~~ 126 (315)
||++.+++.++ +.....|++|.++ .|++.+++.++
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 99999999997 4567789999863 68888877653
No 18
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.2e-19 Score=145.07 Aligned_cols=99 Identities=16% Similarity=0.341 Sum_probs=84.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEE-C----C--EEEEeecccCCCCCeecceEEEEecCC----CcEEEEEEEec
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITC-G----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~----~--~~~rT~vi~~tlnP~w~e~f~f~v~~~----~~~L~~~V~d~ 83 (315)
+|+|+|++|++|+..+ .|.+||||+|++ + . .+.+|+++.+++||.|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 599999999998 2 2 345899999999999999999998632 34699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
|..+++++||++.+++.++ ++....|++|.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9888899999999999997 445667999975
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.82 E-value=2.8e-19 Score=143.52 Aligned_cols=109 Identities=25% Similarity=0.431 Sum_probs=94.5
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEE
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~ 94 (315)
|.|+|++|++|+++|..|.+||||++.++... .+|+++.+++||.|||.|.|.+.+....|.|+|||++..+++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999999999999999997654 59999999999999999999997766899999999999999999999
Q ss_pred EEEEcccCCC---cccEEEEccCC------CceEEEEEE
Q 021238 95 VIVTVESEGQ---TGAVWYTLDSP------SGQVCLHIK 124 (315)
Q Consensus 95 ~~i~l~~l~~---~~~~w~~L~~~------~G~i~~~l~ 124 (315)
+.++++++.. ..+.|++|.+. .|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999887632 36789999752 466666554
No 20
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.82 E-value=1.2e-19 Score=145.88 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=87.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEEEec
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW 83 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V~d~ 83 (315)
.+.|.|+|++|++|++++ .+.+||||++++. ..+.+|++++++.||.|||+|.|.+ .. ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 9999999999994 3467999999999999999999987 31 356899999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 021238 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (315)
|..+++++||++.++|.++ ......|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999997 3446789987
No 21
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=3.1e-19 Score=143.46 Aligned_cols=100 Identities=29% Similarity=0.574 Sum_probs=90.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCceeE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~iG 93 (315)
.|+|+|++|++|..++..+.+||||+++++....+|+++++++||.|||+|.|.+... ...|.|+|||++..+++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999999999999999999988889999999999999999999999753 578999999999999999999
Q ss_pred EEEEEcccCC--CcccEEEEccC
Q 021238 94 SVIVTVESEG--QTGAVWYTLDS 114 (315)
Q Consensus 94 ~~~i~l~~l~--~~~~~w~~L~~ 114 (315)
++.+++.++. .....|+.|.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCC
Confidence 9999999873 44678999975
No 22
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=4.1e-19 Score=141.94 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=97.4
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCC
Q 021238 14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII 86 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~------~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~ 86 (315)
|.|.|+|++|++|+..|. .|.+||||+++++....+|+++.++.||.|+|.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998875 3689999999998888999999999999999999999864 467899999999987
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEe
Q 021238 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT 125 (315)
Q Consensus 87 ~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~~~l~~ 125 (315)
++++||.+.+++.++ ....+.|++|.+ ..|++++++.|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 899999999999987 344679999985 57999887754
No 23
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.81 E-value=3.8e-19 Score=143.92 Aligned_cols=102 Identities=29% Similarity=0.558 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCC--------
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-------- 86 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~-------- 86 (315)
.|+|+|++|++|+..|..|.+||||+++++....+|+++.+++||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999999999999999998888899999999999999999999876567899999999853
Q ss_pred ---CCCceeEEEEEEcccCCCcccEEEEccCCC
Q 021238 87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPS 116 (315)
Q Consensus 87 ---~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~ 116 (315)
+++++||++.+++.++......|+.|.++.
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~ 114 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRT 114 (127)
T ss_pred ccccCCCcceEEEEEhHHccCCCCeEEECccCC
Confidence 468999999999999877788999998643
No 24
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=3.9e-19 Score=144.77 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=93.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCE-------EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-------~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~ 87 (315)
.|+|+|++|++|+..|..|.+||||++.+... ..+|++++++.||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999999999999999998543 46999999999999999999999766678999999999999
Q ss_pred CCceeEEEEEEcccCCC--------cccEEEEccCC------CceEEEEEEe
Q 021238 88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDSP------SGQVCLHIKT 125 (315)
Q Consensus 88 ~dd~iG~~~i~l~~l~~--------~~~~w~~L~~~------~G~i~~~l~~ 125 (315)
++++||++.+++.++.. ....|++|.++ .|+|++++.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 99999999999998632 23489999853 3555555543
No 25
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.81 E-value=2e-19 Score=145.13 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=89.6
Q ss_pred CCceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
....+.|.|+|++|+||+++|.. |.+||||++++. ..+.+|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34467899999999999999976 899999999983 234699999999999999999999863 346899999
Q ss_pred EecCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (315)
||++..+++++||++.++|.++ ......|++|+
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999997 34456799984
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=4e-19 Score=146.62 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=90.1
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEE-ecCC
Q 021238 13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI 85 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~-d~d~ 85 (315)
.+.|.|+|++|+||.+.+ ..|.+||||++++. . .+.||+++++++||.|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 578999999999999874 67899999999992 2 366999999999999999999999866778999999 6888
Q ss_pred CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (315)
Q Consensus 86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (315)
.+++++||++.++|+++ ......|++|.++
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 88899999999999997 4556789999864
No 27
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.80 E-value=4.4e-19 Score=143.20 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=89.8
Q ss_pred CCceeEEEEEEEEeecCCCCCC-CCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
.+..+.|.|+|++|+||++.+. .|.+||||++++. ..+.+|+++++++||.|||+|.|.+.. ....|.|.|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567889999999999998875 5889999999983 235699999999999999999999864 356799999
Q ss_pred EecCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (315)
||++..+++++||++.++|.++ ......|++|.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999999999999999997 45568899984
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=8.5e-19 Score=140.71 Aligned_cols=105 Identities=23% Similarity=0.437 Sum_probs=90.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG 93 (315)
.|.|+|++|++|+.+ .+||||++.++....+|++++++.||.|||+|.|.+.. ....|.|+|||+|.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 389999999999887 79999999998888899999999999999999999875 467899999999977 789999
Q ss_pred EEEEEcccCCC-------cccEEEEccCCC-----ceEEEEEE
Q 021238 94 SVIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIK 124 (315)
Q Consensus 94 ~~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~~~l~ 124 (315)
++.++++++.. ....|++|.+.. |+|++++.
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~ 118 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW 118 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence 99999999732 245899997643 66666654
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=6.7e-19 Score=141.72 Aligned_cols=104 Identities=22% Similarity=0.412 Sum_probs=92.0
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW 83 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~ 83 (315)
.+..+.|.|+|++|++|++++..|.+||||++++. ....+|++++++.||.|+|+|.|.+.. ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 45678999999999999999999999999999983 345799999999999999999999864 256899999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (315)
+.++++++||++.++++++ +...+.|++|+
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999997 45678899985
No 30
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.80 E-value=2e-18 Score=139.27 Aligned_cols=113 Identities=25% Similarity=0.476 Sum_probs=97.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECC---EEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCC
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKS 89 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~---~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~d 89 (315)
+.|+|+|++|++|+..+..+.+||||++.+.. ...+|+++++++||.|||+|.|.+.. ....|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 46899999999999999999999999998753 35699999999999999999999976 367899999999998899
Q ss_pred ceeEEEEEEcccC-----CCcccEEEEccCCCceEEEEEEeec
Q 021238 90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTIK 127 (315)
Q Consensus 90 d~iG~~~i~l~~l-----~~~~~~w~~L~~~~G~i~~~l~~~~ 127 (315)
++||++.++|++. +.....|++|.+ .|++++.+.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence 9999999999874 224568999986 799988887653
No 31
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=2.4e-18 Score=144.43 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=95.3
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCceEEEEEECCEE-EEeecccCCCCCee
Q 021238 13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW 61 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d------------------------------~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w 61 (315)
.|.|.|+|++|++|+.+| ..|.+||||+|+++... .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 789999999999999987 35678999999998654 59999999999999
Q ss_pred cceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccC-------CCceEEEEEEe
Q 021238 62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQVCLHIKT 125 (315)
Q Consensus 62 ~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-------~~G~i~~~l~~ 125 (315)
||+|.|.+....+.|.|.|||+|..+ +++||.+.++++++ +...+.|++|.+ ..|++++++.+
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998776778999999999875 68999999999997 455679999953 23677777664
No 32
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.80 E-value=7e-19 Score=142.53 Aligned_cols=104 Identities=18% Similarity=0.380 Sum_probs=89.7
Q ss_pred CCceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
....+.|.|+|++|+||++++.. |.+||||++++. ..+.||++++++.||.|||+|.|.+.. ....|.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 44568999999999999999875 999999999983 236699999999999999999999864 256899999
Q ss_pred EecCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~-----~~~~~w~~L~ 113 (315)
||++..+++++||++.|+|.++. .....||+|.
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999873 2456899983
No 33
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=4e-18 Score=137.74 Aligned_cols=111 Identities=22% Similarity=0.334 Sum_probs=92.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCc
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd 90 (315)
...|+|+|++|+||++. +.+||||++.++... .+|++. ++.||.|||+|.|.+.+. ...+.|.|||++..++++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 35699999999999875 478999999997644 588874 689999999999987543 357999999999999999
Q ss_pred eeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeec
Q 021238 91 VLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (315)
Q Consensus 91 ~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~ 127 (315)
+||++.++|.++ +...+.|++|.+. .|+|++++.+..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999999987 4445789999753 388999888764
No 34
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=1.8e-18 Score=138.39 Aligned_cols=105 Identities=23% Similarity=0.416 Sum_probs=88.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i 92 (315)
++.|.|+|++|++|..++ ..||||+|++++.+.+|++.+++ ||.|||.|.|.+.+....|.|+|||+|.+ .||+|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence 368999999999997654 46999999999999999999884 99999999999987777799999999865 89999
Q ss_pred EEEEEEcccCC----CcccEEEEccC----CCceEEEE
Q 021238 93 GSVIVTVESEG----QTGAVWYTLDS----PSGQVCLH 122 (315)
Q Consensus 93 G~~~i~l~~l~----~~~~~w~~L~~----~~G~i~~~ 122 (315)
|++.++|.++. ....+|++|++ +.|++.+.
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~ 113 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT 113 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence 99999999962 23478999985 45665443
No 35
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.79 E-value=3.7e-18 Score=138.96 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=98.8
Q ss_pred eeEEEEEEEEeecCCCCCCC----------CCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEEEE
Q 021238 13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~----------g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~ 81 (315)
.|.|+|+|++|++|++.|.. +.+||||++.++... .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 47899999999999998863 679999999998655 599999999999999999999974 678999999
Q ss_pred ecCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEeec
Q 021238 82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK 127 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~----~~~~~w~~L~~~~G~i~~~l~~~~ 127 (315)
|++..+++++||++.++|.++. ...+.|++|.+ .|++++++.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence 9998888999999999999863 34688999986 799999988764
No 36
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=9e-19 Score=140.94 Aligned_cols=104 Identities=21% Similarity=0.372 Sum_probs=90.1
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC----CCcEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI 80 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V 80 (315)
.+..+.|.|+|++|++|...+..+.+||||++++.. ...+|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 455788999999999999999999999999999843 46699999999999999999998643 356899999
Q ss_pred EecCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~ 113 (315)
||++..+.+++||++.++|.+. ......|++|+
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 9999998999999999999984 34457899985
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.79 E-value=1.2e-18 Score=140.28 Aligned_cols=104 Identities=23% Similarity=0.408 Sum_probs=91.4
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW 83 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~ 83 (315)
....+.|.|+|++|++|++.+..+.+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 34567899999999999999999999999999983 345699999999999999999999864 256899999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (315)
|..+++++||++.+++.++ +.....|++|.
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999999999999999997 55678999985
No 38
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=2.8e-18 Score=140.33 Aligned_cols=114 Identities=19% Similarity=0.416 Sum_probs=95.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC----------CCcEEEEEEEec
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW 83 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~----------~~~~L~~~V~d~ 83 (315)
+.|+|+|++|++|+++|..|.+||||++.+.....+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 4799999999999999999999999999999889999999999999999999997532 125699999999
Q ss_pred CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEeec
Q 021238 84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK 127 (315)
Q Consensus 84 d~~~~dd~iG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~~~l~~~~ 127 (315)
|..++|++||++.+ ++..+ ......|++|.. ..|+|.+.+.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 99999999999987 43333 245679999974 3478887777654
No 39
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=8.8e-19 Score=141.02 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=90.4
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC------CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~------~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~ 79 (315)
+.+..+.|.|+|++|+||++++..+.+||||++++- ....+|++.++++||.|||+|.|++.. ....|.|.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 456678899999999999999988999999999982 236799999999999999999999864 46789999
Q ss_pred EEecCCCCCCceeEEEEEEcccCC---CcccEEEEc
Q 021238 80 IYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTL 112 (315)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L 112 (315)
|||++..+++++||++.++|+++. .....|++|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999999872 335678875
No 40
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=6.6e-19 Score=139.17 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=87.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEEecCC
Q 021238 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI 85 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~d~d~ 85 (315)
|.|+|+|++|++|+..|.. +.+||||++++. ....+|+++++++||.|||+|.|.+.. ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999988 999999999983 345799999999999999999998754 34689999999999
Q ss_pred CCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238 86 IWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (315)
Q Consensus 86 ~~~dd~iG~~~i~l~~l~~~~~~w~~L~ 113 (315)
.++|++||++.+++.++. ....|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI-EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence 999999999999999986 446788774
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.78 E-value=1.5e-18 Score=136.85 Aligned_cols=98 Identities=21% Similarity=0.389 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCceEEEEEECCEEEEeecccCCCCCee-cceEEEEecCC---CcEEEEEEEecCCCCCCc
Q 021238 16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST 90 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w-~e~f~f~v~~~---~~~L~~~V~d~d~~~~dd 90 (315)
|.|+|++|++|+.++. .|.+||||+++++....+|+++++++||.| ||+|.|.+... ...|.|+|||++..++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 789999999999888899999999999999 99999998642 468999999999999999
Q ss_pred eeEEEEEEcccCCC-----cccEEEEcc
Q 021238 91 VLGSVIVTVESEGQ-----TGAVWYTLD 113 (315)
Q Consensus 91 ~iG~~~i~l~~l~~-----~~~~w~~L~ 113 (315)
+||++.+++.++.. ....||+|.
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999733 367799985
No 42
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=2.4e-18 Score=139.44 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=89.1
Q ss_pred CCCceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V 80 (315)
+....+.|+|+|++|+||++.+.. +.+||||++.+. ....||+++++++||.|||+|.|. +.. ....|.|.|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 345678999999999999998876 899999999883 345699999999999999999994 432 245799999
Q ss_pred EecCCCCCCceeEEEEEEcccCC----CcccEEEEccC
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDS 114 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~----~~~~~w~~L~~ 114 (315)
||+|..+++++||++.++|.++. ++...|.+|++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99999999999999999999972 44567888864
No 43
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.78 E-value=1.2e-18 Score=144.33 Aligned_cols=100 Identities=21% Similarity=0.379 Sum_probs=86.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEec---------------C-CC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP 73 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~---------------~-~~ 73 (315)
+|.|+|++|++|.. .+|.+||||+|++.. ...+|+++++++||.|||+|.|.+. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 578999999999954 5669999999999999999999984 1 12
Q ss_pred cEEEEEEEecCCCCCCceeEEEEEEcccCCC---cccEEEEccCCC
Q 021238 74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQ---TGAVWYTLDSPS 116 (315)
Q Consensus 74 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~---~~~~w~~L~~~~ 116 (315)
..|.|.|||++..+.++|||++.+++.++.. ....||+|.++.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 4699999999988899999999999999843 467899998753
No 44
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.78 E-value=2.7e-18 Score=134.31 Aligned_cols=97 Identities=26% Similarity=0.318 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG 93 (315)
.|.|+|++|++|+..+..+.+||||+++++....+|+++.++.||.|||.|.|.+.+ ....|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 378999999999999989999999999999899999999999999999999999976 36689999999886 78999
Q ss_pred EEEEEcccCC----CcccEEEEccC
Q 021238 94 SVIVTVESEG----QTGAVWYTLDS 114 (315)
Q Consensus 94 ~~~i~l~~l~----~~~~~w~~L~~ 114 (315)
++.++|.++. ...+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999862 24678999976
No 45
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=3.9e-18 Score=137.31 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=91.2
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEEe
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD 82 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~d 82 (315)
....+.|.|+|++|++|+..+..+.+||||++.+ +....+|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 4557889999999999999999999999999998 3456799999999999999999997532 24579999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
++..+++++||++.+++.++ +.....|+.|.+
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 99999999999999999987 456688999864
No 46
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.77 E-value=3.4e-18 Score=136.82 Aligned_cols=100 Identities=30% Similarity=0.457 Sum_probs=85.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecC
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d 84 (315)
..+.|.|+|++|+||++++ .|.+||||++++. ..+.+|++++++.||.|||+|.|.+.. ....|.|.|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4678999999999999998 8999999999993 235699999999999999999999854 3456899999999
Q ss_pred CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 021238 85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL 112 (315)
Q Consensus 85 ~~~-~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (315)
... .+++||++.+++.++ +.....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 875 478999999999997 3445789976
No 47
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.77 E-value=1e-17 Score=134.78 Aligned_cols=99 Identities=24% Similarity=0.401 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEEC-CEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCC--Cce
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STV 91 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~--dd~ 91 (315)
.|+|+|++|++|+.++..+.+||||+++++ ...++|+++++++||.|||+|.|.+.. ...|.|+|||++..++ +++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 378999999999999999999999999996 667899999999999999999999976 7799999999998875 589
Q ss_pred eEEEEEEcccCCC---cccEEEEccC
Q 021238 92 LGSVIVTVESEGQ---TGAVWYTLDS 114 (315)
Q Consensus 92 iG~~~i~l~~l~~---~~~~w~~L~~ 114 (315)
||++.+++.++.. ....|++|.+
T Consensus 80 lG~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 80 LGCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred EeEEEEEHHHccccCCCccceeEeec
Confidence 9999999999732 2367999954
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.77 E-value=4.2e-18 Score=133.89 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=80.1
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCCCC
Q 021238 14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW 87 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~----g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~~~ 87 (315)
|.|.|+|++|++|++.+.. +.+||||+++++...++|+++++++||.|||.|.|.+.+ ....|.|+|||+|..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999998742 358999999998888899999999999999999999854 3457999999999999
Q ss_pred CCceeEEEEEEcccC
Q 021238 88 KSTVLGSVIVTVESE 102 (315)
Q Consensus 88 ~dd~iG~~~i~l~~l 102 (315)
.|++||++.++|.++
T Consensus 81 ~dd~IG~~~l~L~~l 95 (108)
T cd04039 81 FNDYVATGSLSVQEL 95 (108)
T ss_pred CCcceEEEEEEHHHH
Confidence 999999999999986
No 49
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=4.8e-18 Score=136.91 Aligned_cols=105 Identities=19% Similarity=0.346 Sum_probs=90.2
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY 81 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V~ 81 (315)
+....+.|.|+|++|+||++.+..|.+||||++.+ ...+.+|++.++ .||.|||+|.|. +.. ....|.|.||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 44567889999999999999999999999999877 234669998887 999999999998 543 3667999999
Q ss_pred ecCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
|++..+++++||++.++|+++ ......|++|+|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 999999999999999999997 455678999975
No 50
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=7.8e-18 Score=135.12 Aligned_cols=114 Identities=21% Similarity=0.378 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCceEEEEEECC--EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCc
Q 021238 14 YLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST 90 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~~--~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd 90 (315)
|.|.|+|++|++|+..+ ..+.+||||++.++. ...+|+++.++.||.|||.|.|.+.+..+.|.|+|||++..++++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 78999999999999766 356799999999976 678999999999999999999999866789999999999988999
Q ss_pred eeEEEEEEcccCCC--cc-cEEEEcc---CCCceEEEEEEeec
Q 021238 91 VLGSVIVTVESEGQ--TG-AVWYTLD---SPSGQVCLHIKTIK 127 (315)
Q Consensus 91 ~iG~~~i~l~~l~~--~~-~~w~~L~---~~~G~i~~~l~~~~ 127 (315)
+||.+.+++.++.. .. ..|..+. ...|++++.+.+.+
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 99999999999732 22 2344444 23588888887753
No 51
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=5.5e-18 Score=136.77 Aligned_cols=104 Identities=19% Similarity=0.323 Sum_probs=90.3
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~ 81 (315)
.+..+.|+|+|++|+||+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 45678899999999999999999999999999983 456799999999999999999999853 2468999999
Q ss_pred ecCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238 82 DWDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (315)
Q Consensus 82 d~d~~--~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (315)
|++.. +++++||++.++|.++ ......|++|.
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99875 6899999999999997 45567899884
No 52
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=1.3e-17 Score=133.59 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=90.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i 92 (315)
|.|.|+|++|++|++.+..+.+||||++.++. ...+|+++.++.||.|||+|.|.+....+.|.|+|||++..+++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999999999999999999965 45799999999999999999999877678999999999999999999
Q ss_pred EEEEEEcccC-CCcccEEEEccC
Q 021238 93 GSVIVTVESE-GQTGAVWYTLDS 114 (315)
Q Consensus 93 G~~~i~l~~l-~~~~~~w~~L~~ 114 (315)
|++.+++.++ ......||.|..
T Consensus 81 G~~~~~l~~l~~~~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKKNEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCCCCCceEEecC
Confidence 9999999996 445677887754
No 53
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.76 E-value=7.1e-18 Score=135.32 Aligned_cols=103 Identities=19% Similarity=0.367 Sum_probs=89.7
Q ss_pred CCceeEEEEEEEEeecCCCCC-CCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
....+.|.|+|++|+||++.+ ..+.+||||++++. ....+|++++++.||.|||+|.|.+.+ ....|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 345788999999999999998 78899999999882 145799999999999999999999864 256899999
Q ss_pred EecCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (315)
||++..+++++||++.++|.++ +.....||+|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999999999999997 5556889987
No 54
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.76 E-value=1.3e-18 Score=141.70 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=94.3
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
+....+.|.|+|++|++|++.|..|.+||||++.+. ....+|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 456788999999999999999999999999999983 235699999999999999999999864 246799999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (315)
||+|..+++++||++.+++...+.....|+++....+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPD 124 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCC
Confidence 9999988999999999999987777778988864434
No 55
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.76 E-value=2.7e-18 Score=140.48 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=91.4
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---C--EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S--EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~--~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
+.+....|.|+|++|+||++.|..|.+||||++++. . .+.+|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 445677899999999999999999999999999982 1 24589999999999999999999864 366799999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP 115 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~ 115 (315)
||+|..+++++||++.++....+....+|..+...
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~ 124 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLAS 124 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHC
Confidence 99999999999999999887777667778776543
No 56
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.76 E-value=8.8e-18 Score=134.84 Aligned_cols=105 Identities=20% Similarity=0.333 Sum_probs=90.4
Q ss_pred CCceeEEEEEEEEeecCCCCC-CCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEe
Q 021238 10 TNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d 82 (315)
....+.|.|+|++|++|++.+ ..+.+||||++++ +....+|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 345778999999999999998 6889999999998 23456899999999999999999998642 4579999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
++..+.+++||++.++|.++ ......|++|++
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 99988899999999999997 445578999964
No 57
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.76 E-value=1.8e-17 Score=133.37 Aligned_cols=102 Identities=26% Similarity=0.455 Sum_probs=92.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccC-CCCCeecceEEEEecCC----CcEEEEEEEecCCCCC
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK 88 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~-tlnP~w~e~f~f~v~~~----~~~L~~~V~d~d~~~~ 88 (315)
|.|.|+|++|++|+..+..+.+||||+++++....+|+++.+ +.||.|||+|.|.+... ...|.|+|||.+..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 679999999999999998999999999999888889998885 89999999999999765 5689999999999889
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccCC
Q 021238 89 STVLGSVIVTVESE--GQTGAVWYTLDSP 115 (315)
Q Consensus 89 dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (315)
+++||++.+++.++ .+..+.|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999997 4567889999874
No 58
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.75 E-value=1.1e-17 Score=139.15 Aligned_cols=100 Identities=26% Similarity=0.559 Sum_probs=88.3
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----------------------------EEEEeecccCCCCC
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----------------------------EKRFSSMVPGSRYP 59 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----------------------------~~~rT~vi~~tlnP 59 (315)
..++.+.|.|+|++|++|.++|..|.+||||++.+.. ...+|+++.+++||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 5678999999999999999999999999999999842 13689999999999
Q ss_pred eecceEEEEecC-CCcEEEEEEEecCCCCCCceeEEEEEEcccCC-CcccEEEEc
Q 021238 60 MWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGSVIVTVESEG-QTGAVWYTL 112 (315)
Q Consensus 60 ~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~-~~~~~w~~L 112 (315)
.|||+|.|.+.+ ....|.|+|||++ +++||++.++++++. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 999999999975 3678999999987 889999999999974 567899987
No 59
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.75 E-value=4.5e-18 Score=139.23 Aligned_cols=110 Identities=19% Similarity=0.385 Sum_probs=93.7
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~ 81 (315)
....+.|.|+|++|++|++.|..|.+||||++++. . ...+|+++++++||.|+|+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 34577899999999999999999999999999983 2 24589999999999999999999863 3567999999
Q ss_pred ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 021238 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV 119 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~i 119 (315)
|+|..+++++||++.+++...+.....|++|....|+.
T Consensus 91 d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred ECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCe
Confidence 99999999999999999998766677899886544553
No 60
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=1.6e-17 Score=131.12 Aligned_cols=99 Identities=23% Similarity=0.480 Sum_probs=86.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-----CcEEEEEEEecCCC
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII 86 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-----~~~L~~~V~d~d~~ 86 (315)
..+.|+|+|++|++|. .|.+||||+++++..+.+|++++++.||.|||+|.|.+..+ ...|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4689999999999998 57899999999998899999999999999999999997532 35799999999999
Q ss_pred CCCceeEEEEEEcccCC-----CcccEEEEccC
Q 021238 87 WKSTVLGSVIVTVESEG-----QTGAVWYTLDS 114 (315)
Q Consensus 87 ~~dd~iG~~~i~l~~l~-----~~~~~w~~L~~ 114 (315)
+++++||++.++|+++. .....|++|..
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 88999999999999872 22567999853
No 61
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.75 E-value=1.9e-17 Score=133.64 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=83.0
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEec--CCCcEEEEEEEecCCCC
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIW 87 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~--~~~~~L~~~V~d~d~~~ 87 (315)
....+.|.|+|++|++|+. +..|.+||||+|+++....+|+++++++||.|||+|.|... +....|.|+|||++..+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4457999999999999984 67889999999999888889999999999999999999753 34778999999999999
Q ss_pred CCceeEEEEEEcccCC
Q 021238 88 KSTVLGSVIVTVESEG 103 (315)
Q Consensus 88 ~dd~iG~~~i~l~~l~ 103 (315)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999998653
No 62
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.75 E-value=4e-17 Score=134.89 Aligned_cols=89 Identities=25% Similarity=0.451 Sum_probs=84.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (315)
|.|+|+|++|++|+..+. +.+||||+++++....+|++++++.||.|||+|.|.+.++...|.|+|||++..+.|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999887 8999999999999999999999999999999999999887889999999999999999999
Q ss_pred EEEEEcccCC
Q 021238 94 SVIVTVESEG 103 (315)
Q Consensus 94 ~~~i~l~~l~ 103 (315)
.+.+++.++.
T Consensus 81 ~a~i~l~~l~ 90 (145)
T cd04038 81 EAEIDLEPLV 90 (145)
T ss_pred EEEEEHHHhh
Confidence 9999999873
No 63
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.74 E-value=1.9e-17 Score=133.39 Aligned_cols=110 Identities=22% Similarity=0.374 Sum_probs=93.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeeccc-CCCCCeecceEEEEecCC-----CcEEEEEEEecCCCC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~-~tlnP~w~e~f~f~v~~~-----~~~L~~~V~d~d~~~ 87 (315)
.|.|+|++|++|+..+..+.+||||+++++. ...+|++.. ++.||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999999999999899999999999977 778999876 589999999999999765 578999999999888
Q ss_pred CCceeEEEEEEcccCC--C-----cccEEEEccCCCceEEEEEE
Q 021238 88 KSTVLGSVIVTVESEG--Q-----TGAVWYTLDSPSGQVCLHIK 124 (315)
Q Consensus 88 ~dd~iG~~~i~l~~l~--~-----~~~~w~~L~~~~G~i~~~l~ 124 (315)
++++||++.+++.++. . ....|++|..+.|+..+.+.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 9999999999999962 1 13589999876666655543
No 64
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=5.9e-17 Score=130.95 Aligned_cols=107 Identities=20% Similarity=0.324 Sum_probs=91.0
Q ss_pred EEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCCCceeEEEE
Q 021238 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI 96 (315)
Q Consensus 20 Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~dd~iG~~~ 96 (315)
|++|++|+. ..|.+||||+++++....+|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 68899999999998888999999999999999999999964 4678999999999998999999999
Q ss_pred EEcccCC--CcccEEEEccCC-----CceEEEEEEeecC
Q 021238 97 VTVESEG--QTGAVWYTLDSP-----SGQVCLHIKTIKL 128 (315)
Q Consensus 97 i~l~~l~--~~~~~w~~L~~~-----~G~i~~~l~~~~~ 128 (315)
++++++. .....|++|..+ .|++++++.+.+.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999873 445679999632 3566666665544
No 65
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.74 E-value=7.8e-18 Score=137.85 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=88.4
Q ss_pred CCCceeEEEEEEEEeecCCCCCC--CCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC---CCcEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIV 78 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~ 78 (315)
+.+..+.|+|+|++|+||.++|. .+.+||||++++.. .+.+|+++++++||.|||+|.|.+.. ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 45667889999999999999983 35599999999832 24599999999999999999999864 3567999
Q ss_pred EEEecCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238 79 TIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (315)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~ 113 (315)
+|||+|..+++++||++.+++...+....+|..+.
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEML 124 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHH
Confidence 99999999999999999999987666666676653
No 66
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.74 E-value=2e-17 Score=139.34 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=89.8
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEE
Q 021238 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (315)
Q Consensus 11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~ 81 (315)
...+.|.|+|++|+||++.+..+.+||||++++ ....++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 367999999999999999999999999999988 2356799999999999999999998532 2457999999
Q ss_pred ecCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
|++..+++++||++.+++.++ ......|+.|.+
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999998999999999999986 345678888853
No 67
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=3.3e-17 Score=136.12 Aligned_cols=88 Identities=23% Similarity=0.368 Sum_probs=79.8
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCceEEEEEECCEEEEeecccCCCCCeecceEEEEec--CCCcEEEE
Q 021238 15 LIKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIV 78 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g--------------~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~--~~~~~L~~ 78 (315)
.|.|+|++|++|+.+|..+ .+||||+|.++....+|+++++++||.|||+|.|.+. .....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999998554 6899999999988899999999999999999999874 34568999
Q ss_pred EEEecCCCCCCceeEEEEEEcccC
Q 021238 79 TIYDWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l 102 (315)
+|||+|..++|++||.+.+++.++
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l 104 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKI 104 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHh
Confidence 999999999999999999999986
No 68
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.73 E-value=6.5e-18 Score=138.22 Aligned_cols=107 Identities=28% Similarity=0.426 Sum_probs=92.3
Q ss_pred CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCC---CcEEEEE
Q 021238 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVT 79 (315)
Q Consensus 8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~ 79 (315)
.+.++.+.|.|+|++|++|+.++..|.+||||++.+. . ...+|+++++++||.|||+|.|.+... ...|.|+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3556788999999999999999999999999999983 2 345899999999999999999998532 3479999
Q ss_pred EEecCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (315)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~ 114 (315)
|||++.++++++||++.+++...+.....|+++..
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~ 123 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA 123 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccCChHHHHHHHHHh
Confidence 99999999999999999999887766778888754
No 69
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=5.6e-17 Score=128.60 Aligned_cols=102 Identities=26% Similarity=0.483 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG 93 (315)
|+|+|++|++|+..+..+.+||||++.+.. ...+|+++.++.+|.|||+|.|.+.+ ..+.+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999889999999999954 45699999999999999999999875 4678999999999988999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCc
Q 021238 94 SVIVTVESE--GQTGAVWYTLDSPSG 117 (315)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G 117 (315)
++.+++.++ +.....|++|.+++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 999999986 445678999987544
No 70
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.72 E-value=1.4e-17 Score=135.99 Aligned_cols=110 Identities=23% Similarity=0.387 Sum_probs=92.1
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
+.+..+.|+|+|++|++|++++..|.+||||++.+. ....+|+++++++||.|+|+|.|.+.. ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 346678999999999999999999999999999983 135689999999999999999999853 234699999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
||++..+++++||++.+++...+.+...|+++....|+
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK 126 (134)
T ss_pred EECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence 99999999999999999988666666778877543343
No 71
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.72 E-value=4.3e-17 Score=133.61 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEEC----CEEEEeecccCCCCCeecceEEEEecCC----------------CcE
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ 75 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~----~~~~rT~vi~~tlnP~w~e~f~f~v~~~----------------~~~ 75 (315)
|.|+|++|++|+.+ ..|.+||||++++. ....+|+++.++.||.|+|+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999997 6678999999999999999999998542 457
Q ss_pred EEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238 76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (315)
Q Consensus 76 L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (315)
|.|+|||++..++++|||++.+++.++ ......|++|.++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988999999999999986 3456889999864
No 72
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.72 E-value=2.7e-18 Score=158.94 Aligned_cols=103 Identities=25% Similarity=0.499 Sum_probs=92.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecC
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d 84 (315)
....|+|+|.+|+||.++|.+|.|||||++++ +..+++|++++.++||+|||+|+|.+.+ .+..|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 34578899999999999999999999999999 3456799999999999999999999964 5778999999999
Q ss_pred CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 021238 85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (315)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~ 114 (315)
+.+.+||+|...+.++++ ..+.+.||.|..
T Consensus 258 rTsRNDFMGslSFgisEl~K~p~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAPVDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhcchhhHHHHhh
Confidence 999999999999999997 567889999864
No 73
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=1.6e-17 Score=135.88 Aligned_cols=109 Identities=25% Similarity=0.395 Sum_probs=92.0
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
+.+..+.|.|+|++|+||++.+..|.+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 445678999999999999999999999999999882 234589999999999999999999852 246799999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (315)
||++..+++++||++.+++.+.+.....|+++....|
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~ 126 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPR 126 (136)
T ss_pred EECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCC
Confidence 9999999999999999999987666677877754333
No 74
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.72 E-value=6.3e-17 Score=131.96 Aligned_cols=94 Identities=21% Similarity=0.409 Sum_probs=83.2
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-------CEEEEeecccCCCCCeecceEEEEecC-----CCcEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQII 77 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-------~~~~rT~vi~~tlnP~w~e~f~f~v~~-----~~~~L~ 77 (315)
....+.|+|+|++|++|+..+..|.+||||+|++. ....+|+++++|+||.|||+|.|.+.. ....|.
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 34567899999999999999989999999999984 346799999999999999999999854 245799
Q ss_pred EEEEecCCCCCCceeEEEEEEcccCC
Q 021238 78 VTIYDWDIIWKSTVLGSVIVTVESEG 103 (315)
Q Consensus 78 ~~V~d~d~~~~dd~iG~~~i~l~~l~ 103 (315)
|+|||++..+++++||++.++|+++.
T Consensus 92 ~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 92 FTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 99999999988999999999999874
No 75
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.71 E-value=3.7e-17 Score=133.70 Aligned_cols=110 Identities=21% Similarity=0.408 Sum_probs=90.7
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C-C---EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-G-S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~-~---~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
+.+..+.|.|+|++|++|+..|..|.+||||++.+ . . ...+|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34566899999999999999999999999999997 2 1 34689999999999999999999853 234799999
Q ss_pred EecCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCce
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ 118 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G~ 118 (315)
||+|..+++++||++.+.....+. ...+|..|....|+
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT 127 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence 999999999999999877766544 35778888654444
No 76
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.71 E-value=4.4e-17 Score=132.06 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=89.5
Q ss_pred CCCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCC-CCeecceEEEEecC--CCcEEEE
Q 021238 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDE--LPVQIIV 78 (315)
Q Consensus 7 ~~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tl-nP~w~e~f~f~v~~--~~~~L~~ 78 (315)
.++.+..+.|+|+|++|+||++++..+.+||||+|++- ..+++|+++++|+ ||.|||+|.|++.. .+..|.+
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 46778899999999999999998767788999999882 3466999999995 69999999999964 3456899
Q ss_pred EEEecCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 021238 79 TIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (315)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~ 113 (315)
+|||++..+++++||++.++.+.. +.+..+|.+..
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHH
Confidence 999999999999999999999774 34467777653
No 77
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.71 E-value=8e-18 Score=166.33 Aligned_cols=103 Identities=36% Similarity=0.650 Sum_probs=91.8
Q ss_pred ceeec--cCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccC-cEEEEE
Q 021238 165 LQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITIIL 241 (315)
Q Consensus 165 f~~~F--~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-~i~i~~ 241 (315)
|...+ ++|+++.|+.+|+|++.+.+.+|||||++..|+||+|+++||+++++||+.+|+-|+|++++++.| +|.|.+
T Consensus 109 ~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~t 188 (590)
T KOG1032|consen 109 LASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEITT 188 (590)
T ss_pred hhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEec
Confidence 44444 488999999999999999999999999999999999999999999999999999999999999998 677774
Q ss_pred ecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHh
Q 021238 242 RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKN 283 (315)
Q Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~ 283 (315)
+..+|.|+||.+||.+|.+|..+.+.
T Consensus 189 ----------------~~~ky~f~s~~Srda~~~~~~~~~~~ 214 (590)
T KOG1032|consen 189 ----------------GTTKYIFVSLLSRDATYKLIKLLLHK 214 (590)
T ss_pred ----------------CCCcceeeecccCccHHHHHHHhhhh
Confidence 45699999999999999977555543
No 78
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.70 E-value=3.7e-17 Score=134.13 Aligned_cols=110 Identities=19% Similarity=0.336 Sum_probs=92.6
Q ss_pred CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C----EEEEeecccCCCCCeecceEEEEecC---CCcEEEE
Q 021238 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIV 78 (315)
Q Consensus 8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~ 78 (315)
.+....+.|.|+|++|+||++++..|.+||||++.+. . .+.+|++++++.||.|||+|.|.+.. ....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4566789999999999999999999999999999982 1 24599999999999999999999863 3568999
Q ss_pred EEEecCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 021238 79 TIYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG 117 (315)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G 117 (315)
.|||++..+++++||++.+++...+. ...+|..+....+
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~ 128 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKG 128 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCC
Confidence 99999999999999999999987653 3467887754333
No 79
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=7.4e-16 Score=128.17 Aligned_cols=115 Identities=12% Similarity=0.125 Sum_probs=90.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC---------CcEEEEE
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT 79 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~---------~~~L~~~ 79 (315)
+.|+|....+-+|+..+..+.+||||++++ ...+.||+++++|+||.|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444444444444778888889999999987 24567999999999999999999999643 3469999
Q ss_pred EEecCCC-CCCceeEEEEEEcccC--CCcccEEEEcc-C---CCceEEEEEEeecC
Q 021238 80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLD-S---PSGQVCLHIKTIKL 128 (315)
Q Consensus 80 V~d~d~~-~~dd~iG~~~i~l~~l--~~~~~~w~~L~-~---~~G~i~~~l~~~~~ 128 (315)
|||.+.+ .+|++||++.++|+.+ ......|++|. + .+|++++++.....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 9999986 4799999999999998 44566799985 2 35888888876543
No 80
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.69 E-value=4.9e-16 Score=123.41 Aligned_cols=105 Identities=29% Similarity=0.427 Sum_probs=85.0
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCCCce
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~dd~ 91 (315)
|.|+|++|++|+.. +.+||||.++++.. ..+|+++.+ .||.|||+|.|.+.+ ....|.+.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999765 469999988 999999999999875 23568888898887666777
Q ss_pred eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 021238 92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (315)
Q Consensus 92 iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~~~l~ 124 (315)
+|.+.+.....+.....|++|.+. .|++++.+.
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 777766665567777899999753 477776664
No 81
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.69 E-value=5.7e-16 Score=126.72 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=83.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEEC-------------CEEEEeecccCCCCCee-cceEEEEecCCCcEEEEEE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------------SEKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI 80 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-------------~~~~rT~vi~~tlnP~w-~e~f~f~v~~~~~~L~~~V 80 (315)
...|++++|+||+ ++..|++||||++++. ...++|+++++++||.| ||+|.|.+.. ...|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4689999999998 7889999999999983 13679999999999999 9999999864 56899999
Q ss_pred EecCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 021238 81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP 115 (315)
Q Consensus 81 ~d~d~~~~---dd~iG~~~i~l~~l~-----~~~~~w~~L~~~ 115 (315)
||++..+. +++||++.+++.++. .....|++|.++
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99875443 799999999999972 235679999854
No 82
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.69 E-value=2.5e-16 Score=127.91 Aligned_cols=105 Identities=27% Similarity=0.479 Sum_probs=91.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCCC
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDII 86 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~~ 86 (315)
+.|+|+|++|++|+..+..+.+||||++.+. ....+|+++.++.+|.|||+|.|.+.+ ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999999988999999999984 356799999999999999999999864 356799999999988
Q ss_pred CCCceeEEEEEEcccCC-CcccEEEEccC-CCce
Q 021238 87 WKSTVLGSVIVTVESEG-QTGAVWYTLDS-PSGQ 118 (315)
Q Consensus 87 ~~dd~iG~~~i~l~~l~-~~~~~w~~L~~-~~G~ 118 (315)
+++++||++.+++.++. .....|++|.. +.|.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~ 126 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE 126 (131)
T ss_pred CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence 89999999999999973 45678999964 3453
No 83
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.69 E-value=2.2e-16 Score=126.43 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=82.3
Q ss_pred EEEEeecCCCCCCCCCCceEEEEEECCE-------EEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCC----C
Q 021238 19 ELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----I 86 (315)
Q Consensus 19 ~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-------~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~----~ 86 (315)
-.++|++|+..+..|.+||||++++... ..+|+++++++||.|+|+|.|.+. +....|.|+|||+|. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 4588999999999999999999999443 379999999999999999999864 446689999999997 7
Q ss_pred CCCceeEEEEEEcccCC--CcccEEEEccC
Q 021238 87 WKSTVLGSVIVTVESEG--QTGAVWYTLDS 114 (315)
Q Consensus 87 ~~dd~iG~~~i~l~~l~--~~~~~w~~L~~ 114 (315)
+++++||++.+++.++. .....|++|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 89999999999999973 45567888844
No 84
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=3.2e-16 Score=126.27 Aligned_cols=89 Identities=24% Similarity=0.492 Sum_probs=80.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEE--EEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCce
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~--~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~ 91 (315)
.|+|.|++|++|+.+|..|.+||||++.++... .+|+++++++||.|||+|.|.+.. ....|.|+|||+|..++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999999999999999999997654 478889999999999999999853 46789999999999999999
Q ss_pred eEEEEEEcccCC
Q 021238 92 LGSVIVTVESEG 103 (315)
Q Consensus 92 iG~~~i~l~~l~ 103 (315)
||++.+++++..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999864
No 85
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.68 E-value=5.7e-17 Score=117.03 Aligned_cols=67 Identities=30% Similarity=0.638 Sum_probs=48.6
Q ss_pred CCceeeccCCcccceeecceeeeee-ecccceeEEeecceeeeeecCCCcee-EEEEecCceeEEEeec
Q 021238 163 GPLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (315)
Q Consensus 163 ~~f~~~F~lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~ 229 (315)
+.|++.|++|.+|.|+.+|.|++++ .++++|+||+|.+|+||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 3589999999999999999999999 99999999999999999999999887 9999999999999964
No 86
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.68 E-value=1e-16 Score=130.39 Aligned_cols=109 Identities=26% Similarity=0.438 Sum_probs=93.7
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~ 81 (315)
.+..+.|.|+|++|++|+..+..+.+||||++.+.. ...+|+++.++.||.|||+|.|.+... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 345688999999999999999899999999999842 245999999999999999999998653 478999999
Q ss_pred ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
|.+..+++++||++.+++++.+...+.|++|....|+
T Consensus 90 d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK 126 (134)
T ss_pred ecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence 9998888999999999999976677889998754343
No 87
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.67 E-value=1.5e-15 Score=122.49 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=83.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (315)
.|.|+|++|+ |...+..+.+||||+++++.. ..+|+++.+++||.|||.|.|.+.+ ...|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 656666889999999999766 7899999999999999999999865 678999999999998999999
Q ss_pred EEEEEcccCCC-----c--ccEEEEcc
Q 021238 94 SVIVTVESEGQ-----T--GAVWYTLD 113 (315)
Q Consensus 94 ~~~i~l~~l~~-----~--~~~w~~L~ 113 (315)
++.++|.++.. . ...|++|.
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 99999998621 1 23488885
No 88
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.6e-15 Score=145.63 Aligned_cols=165 Identities=19% Similarity=0.243 Sum_probs=127.0
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW 83 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~ 83 (315)
......|+|+|++|++|+.+|..|.+||||++++. ..+.+|++.++++||.|||+|.|.+.. ....|.|.|||+
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF 242 (421)
T ss_pred cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence 34577899999999999999977789999999993 356699999999999999999999742 467899999999
Q ss_pred CCCCCCceeEEEEEEcccCC--CcccEEEEccCC-------CceEEEEEEeecCccccccccccccccccccccccccCC
Q 021238 84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQG 154 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~ 154 (315)
|+++.+++||++.++|..+. .....|.+|.+. .|++.+.+.|.+.... ....-+++..+.
T Consensus 243 drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~-----------ltv~v~kar~L~ 311 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR-----------LTVVVIKARNLK 311 (421)
T ss_pred CCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCe-----------EEEEEEEecCCC
Confidence 99999999999999998863 335789999742 2688888888776322 112223344555
Q ss_pred CcccccCCCCceeeccCCcccceeecceeee
Q 021238 155 PTVVHQKPGPLQTIFNLLPDEFVELSYSCVI 185 (315)
Q Consensus 155 ~~~~~~k~~~f~~~F~lp~~E~l~~~~~c~l 185 (315)
..+....+++|.+...++.+..+...-.+.-
T Consensus 312 ~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~ 342 (421)
T KOG1028|consen 312 SMDVGGLSDPYVKVTLLDGDKRLSKKKTSVK 342 (421)
T ss_pred cccCCCCCCccEEEEEecCCceeeeeeeecc
Confidence 5666677788988887777755554444433
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.66 E-value=1.4e-15 Score=122.20 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=85.9
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTI 80 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V 80 (315)
.+..+.|.|+|++|++|++.+..+.+||||++.+. ....+|++++++.||.|||+|.|.. .. ....|.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 34568899999999999999988999999999872 2357999999999999999999963 22 246899999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (315)
||++.. .+++||++.++++++......|+.+
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence 999988 8899999999999987665666543
No 90
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.65 E-value=4.4e-16 Score=127.68 Aligned_cols=104 Identities=17% Similarity=0.277 Sum_probs=86.3
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V 80 (315)
+.+..+.|.|+|++|+||.+.+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3456788999999999999999 88899999999831 35589999999999999999999863 246799999
Q ss_pred EecCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (315)
||++..+++++||++.++.... +.+..+|..+.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 9999999999999999986533 44456676664
No 91
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.64 E-value=2.2e-15 Score=119.07 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=70.3
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEec-------
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW------- 83 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~------- 83 (315)
|.|+|.+|+||+ +.+||||.+.++. ...+|+++++|+||.|||+|.|.+.. ...|++.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 689999999995 5699999998842 45799999999999999999999975 77999999998
Q ss_pred CCCCCCceeEEEEEEccc
Q 021238 84 DIIWKSTVLGSVIVTVES 101 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~ 101 (315)
|..++|+++|.+.+.|+.
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 566789999999999875
No 92
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=6.8e-15 Score=121.21 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=84.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEE-EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC--
Q 021238 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW-- 87 (315)
Q Consensus 11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~-rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~-- 87 (315)
.-...|.|.|++|++|++++ +|||.|.++.... ||+++.++.||.|+|.|.|........|.|.||+.+...
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 34677999999999998865 8999999988875 999999999999999999987666678999998765322
Q ss_pred --CCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 88 --~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
++++||.+.||+.++ +...+.||+|.+
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 578999999999997 456789999964
No 93
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.64 E-value=1.7e-15 Score=119.24 Aligned_cols=95 Identities=20% Similarity=0.336 Sum_probs=79.3
Q ss_pred EEEEEEeecCCCCCCCCCCceEEEEEECC------EEEEeecccCCCCCeecceEEEEecC-----CCcEEEEEEEecCC
Q 021238 17 KLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDI 85 (315)
Q Consensus 17 ~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~------~~~rT~vi~~tlnP~w~e~f~f~v~~-----~~~~L~~~V~d~d~ 85 (315)
.+-.++|++|+..|..|.+||||++++.. ..++|+++++++||.|| +|.|.+.+ ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 35567999999999999999999998843 24799999999999999 78887532 26789999999999
Q ss_pred CCCCceeEEEEEEcccCCCcccEEEEc
Q 021238 86 IWKSTVLGSVIVTVESEGQTGAVWYTL 112 (315)
Q Consensus 86 ~~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (315)
.++|++||++.++++++......++.+
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 999999999999999986555555544
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.63 E-value=1.2e-14 Score=117.22 Aligned_cols=102 Identities=23% Similarity=0.363 Sum_probs=85.4
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCceEEEEEE------CCEEEEeecccCCC-CCeecceEEEEecCC-CcEEEEEEEec
Q 021238 14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDEL-PVQIIVTIYDW 83 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d--~~g~sDPyv~v~l------~~~~~rT~vi~~tl-nP~w~e~f~f~v~~~-~~~L~~~V~d~ 83 (315)
..|+|+|++|++|+..+ ..+.+||||++++ .....+|+++.++. ||.|+|+|.|.+..+ ...|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999988 5889999999998 23457999988775 999999999998643 35699999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 021238 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (315)
+.. ++++||++.++++++.. ...|++|..+.|
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~~ 113 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSKG 113 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCCC
Confidence 987 89999999999999854 357889865333
No 95
>PLN03008 Phospholipase D delta
Probab=99.62 E-value=3.6e-15 Score=149.77 Aligned_cols=119 Identities=18% Similarity=0.331 Sum_probs=100.2
Q ss_pred ceeEEEEEEEEeecCCCCCC------------------------------------------CCCCceEEEEEECCE-EE
Q 021238 12 SAYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSE-KR 48 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~------------------------------------------~g~sDPyv~v~l~~~-~~ 48 (315)
-.|.|.|+|.+|++|+.+|. .+++||||+|.++.. ..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 47899999999999986332 246799999999765 45
Q ss_pred EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccC-------CCceE
Q 021238 49 FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQV 119 (315)
Q Consensus 49 rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-------~~G~i 119 (315)
||+++++++||+|||+|.|.+..+...|.|.|||+|.++ +++||++.+|+.++ +...+.|++|.. ..+++
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 999999999999999999999877789999999999986 58999999999997 455778999953 23688
Q ss_pred EEEEEeecCccc
Q 021238 120 CLHIKTIKLPVN 131 (315)
Q Consensus 120 ~~~l~~~~~~~~ 131 (315)
++++.+.+....
T Consensus 171 ~v~lqf~pv~~~ 182 (868)
T PLN03008 171 FIDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEEcccc
Confidence 999998877654
No 96
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=5.7e-15 Score=116.62 Aligned_cols=96 Identities=20% Similarity=0.331 Sum_probs=82.1
Q ss_pred CCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCceeEEEEEEcccC---CCc
Q 021238 31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT 105 (315)
Q Consensus 31 ~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l---~~~ 105 (315)
.+|.+||||+++++.. ..+|+++.++.||.|||.|.|.+.+. ...|.|+|||++.. ++++||.+.++|.++ ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 5788999999999764 56999999999999999999999764 56799999999998 899999999999986 233
Q ss_pred ccEEEEcc-CCCceEEEEEEeec
Q 021238 106 GAVWYTLD-SPSGQVCLHIKTIK 127 (315)
Q Consensus 106 ~~~w~~L~-~~~G~i~~~l~~~~ 127 (315)
...|++|+ .+.|++++++.+.+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 57899997 34799988888765
No 97
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.6e-15 Score=145.88 Aligned_cols=118 Identities=30% Similarity=0.502 Sum_probs=105.0
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCC--
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-- 86 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~-- 86 (315)
++.=...++++|++|++|...|-.|++||||.+.++..+.||+++...+||+|||.|.|++++....+++.|||.|..
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 344456789999999999999999999999999999999999999999999999999999999889999999998842
Q ss_pred ---------CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEee
Q 021238 87 ---------WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI 126 (315)
Q Consensus 87 ---------~~dd~iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~~~l~~~ 126 (315)
..|||+|++.|.+..+.+..+.||.|+++ +|.|++.|.++
T Consensus 370 sklrqkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence 35899999999999999999999999853 47777777654
No 98
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.56 E-value=7.1e-15 Score=103.39 Aligned_cols=59 Identities=36% Similarity=0.693 Sum_probs=56.3
Q ss_pred cCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCcee-EEEEecCceeEEEee
Q 021238 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRS 228 (315)
Q Consensus 170 ~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~ 228 (315)
+||++|.++.+|.|+|++.++++|+||+|++++||+|..+++.+ +++||+.||..|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 37899999999999999999999999999999999999999988 999999999999985
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=157.60 Aligned_cols=112 Identities=20% Similarity=0.304 Sum_probs=97.1
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCC--CcEEEEEEEecCCCCC
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDIIWK 88 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~--~~~L~~~V~d~d~~~~ 88 (315)
-.|.|+|+|++|.||. +..|.+||||++.+++. +.+|++++++.||.|||.|+|.+.++ ..+|.++|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3689999999999998 44799999999999855 77999999999999999999888764 4789999999999855
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEee
Q 021238 89 STVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI 126 (315)
Q Consensus 89 dd~iG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~~~l~~~ 126 (315)
| .+|.+.+++.++ ++....||+|.+ +.|+ +.+++.|.
T Consensus 2056 d-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2056 S-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred C-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 4 999999999997 566788999984 6788 77777764
No 100
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=1.7e-13 Score=101.53 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=72.8
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECC---EEEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCCCCCCce
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~---~~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~~~~dd~ 91 (315)
|+|+|++|++|...+..+..||||++.+.. ...+|+++.++.+|.|+|+|.|.+. .....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988889999999999955 6689999999999999999999974 345569999999999988999
Q ss_pred eEEEE
Q 021238 92 LGSVI 96 (315)
Q Consensus 92 iG~~~ 96 (315)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 101
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.39 E-value=4.2e-12 Score=95.83 Aligned_cols=97 Identities=30% Similarity=0.574 Sum_probs=84.7
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG 93 (315)
|.|.|++|++|......+..+|||.+.+.. ...+|+++.++.||.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998877778899999999976 78899999999999999999999976 6778999999999887789999
Q ss_pred EEEEEcccCC---CcccEEEEc
Q 021238 94 SVIVTVESEG---QTGAVWYTL 112 (315)
Q Consensus 94 ~~~i~l~~l~---~~~~~w~~L 112 (315)
.+.+++.++. .....|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999874 445667764
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.36 E-value=8.6e-12 Score=94.58 Aligned_cols=89 Identities=24% Similarity=0.493 Sum_probs=79.3
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECCE---EEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCce
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~---~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~ 91 (315)
|.|.|++|++|......+..+|||++.+... ..+|+++.++.||.|+|+|.|.+... ...|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999998876678999999999654 68999999999999999999999776 7889999999998878999
Q ss_pred eEEEEEEcccCCC
Q 021238 92 LGSVIVTVESEGQ 104 (315)
Q Consensus 92 iG~~~i~l~~l~~ 104 (315)
+|.+.+++.++..
T Consensus 82 ~G~~~~~l~~~~~ 94 (101)
T smart00239 82 IGQVTIPLSDLLL 94 (101)
T ss_pred eEEEEEEHHHccc
Confidence 9999999988743
No 103
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.36 E-value=2.2e-12 Score=125.89 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=101.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i 92 (315)
..|.|.|.+|+||++.+..|.+||||.|.++.+ ..||.++.+++.|-|.|.|.|.+...-..|.|-|||.| ++.|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 358999999999999999999999999999765 55999999999999999999999887888999999999 8999999
Q ss_pred EEEEEEcccC--CCcccEEEEccC------CCceEEEEEEeecCc
Q 021238 93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLP 129 (315)
Q Consensus 93 G~~~i~l~~l--~~~~~~w~~L~~------~~G~i~~~l~~~~~~ 129 (315)
|.+.|.=.++ -++.+.|+.|.+ -.|++++++.+.+..
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc
Confidence 9999988876 457889999974 248999888865443
No 104
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.8e-12 Score=124.68 Aligned_cols=105 Identities=26% Similarity=0.442 Sum_probs=86.9
Q ss_pred CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE--C---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEE
Q 021238 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--G---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (315)
Q Consensus 8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~ 79 (315)
++.+..|.|+|.|++|++|+.++..+.+||||++.+ + ..+++|.+.++++||.|||+|.|.+.. ....|.++
T Consensus 292 ~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 292 CYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred EeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 466778999999999999999999999999999988 2 345599999999999999999998863 24579999
Q ss_pred EEecCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 021238 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (315)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (315)
|||+|.++.+++||.+.+....-+....+|...
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m 404 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEM 404 (421)
T ss_pred EEEcccccccceeeEEEecCCCCchHHHHHHHH
Confidence 999999999999999888877533333444433
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=2.8e-11 Score=98.13 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=74.5
Q ss_pred EEEEEEEEeecCCC--CCCCCC--CceEEEEEEC---CEEEEeecccCCCC--CeecceEEEEecC--------------
Q 021238 15 LIKLELLAAKNLIG--ANLNGT--SDPYAIITCG---SEKRFSSMVPGSRY--PMWGEEFNFSVDE-------------- 71 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~--~d~~g~--sDPyv~v~l~---~~~~rT~vi~~tln--P~w~e~f~f~v~~-------------- 71 (315)
.|+|.|.+|++++. .+..|. +||||+..+. ..+++|.+..+++| |.||+.|.|.+.-
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 37999999999654 344674 9999999984 45679999999999 9999999987642
Q ss_pred ----------CCcEEEEEEEecCCCCCCceeEEEEEEcccCC
Q 021238 72 ----------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103 (315)
Q Consensus 72 ----------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~ 103 (315)
....|.++|||.|.+++|++||++.++|..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP 122 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence 13459999999999999999999999999873
No 106
>PLN02223 phosphoinositide phospholipase C
Probab=99.28 E-value=3.5e-11 Score=116.77 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=84.7
Q ss_pred eeEEEEEEEEeecCCC-----CCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEE
Q 021238 13 AYLIKLELLAAKNLIG-----ANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIY 81 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~-----~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~ 81 (315)
...|+|+|++|+++.. .+..+..||||+|.+ +....+|.+..|+.||.|||+|.|.+..+ -..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 123456899999998 33456788777899999999999999754 446999999
Q ss_pred ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
|+|..++++|+|++.+|+..+..+ -++++|..+.|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~ 523 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK 523 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence 999888999999999999998765 477788765654
No 107
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.20 E-value=6.4e-11 Score=121.51 Aligned_cols=108 Identities=22% Similarity=0.368 Sum_probs=93.1
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCCC
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDII 86 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~~ 86 (315)
.-.+.|.|+|.+.+|.||+..|.+|.+||||++.+... .++|+++++|+||.|||.|.+.+. .....+.+.|+|||..
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence 34578999999999999999999999999999999766 679999999999999999999997 4567899999999999
Q ss_pred CCCceeEEEEEEcccCCCcc--cEEEEccCCC
Q 021238 87 WKSTVLGSVIVTVESEGQTG--AVWYTLDSPS 116 (315)
Q Consensus 87 ~~dd~iG~~~i~l~~l~~~~--~~w~~L~~~~ 116 (315)
.+++.||.+.++|..+.+.. ..-.+|+++.
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred CCccccccccccHhhcCcCCccceeeeccCcc
Confidence 99999999999999984332 2335666543
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.19 E-value=1.5e-10 Score=114.58 Aligned_cols=105 Identities=16% Similarity=0.259 Sum_probs=85.0
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEE
Q 021238 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~------d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V 80 (315)
...|+|+|++|++|+.. +.....||||+|.+ +..+.+|+++.++.||.|||+|.|.+..+ -..|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999987531 22234599999988 34566999999999999999999998654 45699999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
||+|..+.++|+|++.+|+..+..+. +|++|..+.|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~ 585 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE 585 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence 99999889999999999999997654 69999755543
No 109
>PLN02270 phospholipase D alpha
Probab=99.14 E-value=5.4e-10 Score=112.81 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=96.6
Q ss_pred ceeEEEEEEEEeecCCCCC------------------CCCCCceEEEEEECCE-EEEeecccCC-CCCeecceEEEEecC
Q 021238 12 SAYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSE-KRFSSMVPGS-RYPMWGEEFNFSVDE 71 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d------------------~~g~sDPyv~v~l~~~-~~rT~vi~~t-lnP~w~e~f~f~v~~ 71 (315)
-.|.|.|+|++|++|+..+ ..+.+||||.|.++.. ..||+++.+. .||.|+|.|.+.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 4789999999999998632 1246799999999655 4599999885 699999999999988
Q ss_pred CCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeecCccc
Q 021238 72 LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVN 131 (315)
Q Consensus 72 ~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~ 131 (315)
....+.|.|-|.|.++. .+||.+.+|+.++ +...+.|+++... ..++++++.+.+....
T Consensus 86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 78999999999998865 5999999999997 5568899999532 2367788887765443
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=117.26 Aligned_cols=126 Identities=17% Similarity=0.332 Sum_probs=100.6
Q ss_pred CCCCCCCCCceeEEEEEEEEeecCCCCC--CCCCCceEEEEEEC-CEEEEeecccCCCCCeecceEEEEecCCCcEEEEE
Q 021238 3 QFKGDPQTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79 (315)
Q Consensus 3 ~~~~~~~~~~~g~L~V~Ii~A~~L~~~d--~~g~sDPyv~v~l~-~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~ 79 (315)
|.+.+.+....|+|.|+|.+|++|...+ ..+..|||+.+... ....+|++.++++||+|||+|.+.+.....+|.++
T Consensus 425 ~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~Ls 504 (1227)
T COG5038 425 QIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLS 504 (1227)
T ss_pred HhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEE
Confidence 3444557788999999999999999988 78999999999984 34459999999999999999999998888999999
Q ss_pred EEecCCCCCCceeEEEEEEcccCC---CcccEEEEcc---CCCceEEEEEEeecC
Q 021238 80 IYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLD---SPSGQVCLHIKTIKL 128 (315)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~---~~~G~i~~~l~~~~~ 128 (315)
|||.+...+|+.+|.+.++|..+. .....-+.+. ...|++.-.+.+.+.
T Consensus 505 lyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 505 LYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred EEeccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence 999888889999999999998761 1122233332 234677666666654
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.13 E-value=3.3e-10 Score=111.92 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=84.3
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEE
Q 021238 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~------d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V 80 (315)
...|.|+|+.+.++... +..+..||||+|.+ +..+.+|++..++.||.|||+|.|.+.-+ -..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987421 22345799999998 24456889888999999999999998643 56799999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
+|+|..++++|+|+..+|+..+..+ -+.++|..+.|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR~V~L~~~~G~ 584 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG-IHAVPLFNRKGV 584 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc-cceEeccCCCcC
Confidence 9999988999999999999999765 446788665554
No 112
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.12 E-value=1.8e-11 Score=119.61 Aligned_cols=93 Identities=25% Similarity=0.399 Sum_probs=82.6
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-------EEEEeecccCCCCCeecceEEEEecCC-----CcEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQII 77 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-------~~~rT~vi~~tlnP~w~e~f~f~v~~~-----~~~L~ 77 (315)
..+.-.|.|.|+-|+++.+.|.+|.|||||+|.+.. ..++|+|+++|+||+|+|+|+|.|... ...+.
T Consensus 943 ~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~ 1022 (1103)
T KOG1328|consen 943 NGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLH 1022 (1103)
T ss_pred eccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEE
Confidence 455677899999999999999999999999999953 345999999999999999999999642 34599
Q ss_pred EEEEecCCCCCCceeEEEEEEcccC
Q 021238 78 VTIYDWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 78 ~~V~d~d~~~~dd~iG~~~i~l~~l 102 (315)
|+|+|+|-++.+||-|++.+.|+++
T Consensus 1023 FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1023 FTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EEeeccceecccccchHHHHhhCCC
Confidence 9999999999999999999999997
No 113
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-11 Score=119.98 Aligned_cols=117 Identities=27% Similarity=0.484 Sum_probs=94.4
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC------C-------------------------EEEEeecccCCCCC
Q 021238 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------S-------------------------EKRFSSMVPGSRYP 59 (315)
Q Consensus 11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~------~-------------------------~~~rT~vi~~tlnP 59 (315)
++...+.|.+.+|++|...|.+|.||||+++.+- + -.+-|++.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 4567788999999999999999999999998761 0 01257888899999
Q ss_pred eecceEEEEecCC-CcEEEEEEEecCC---------------------------------CCC---CceeEEEEEEcccC
Q 021238 60 MWGEEFNFSVDEL-PVQIIVTIYDWDI---------------------------------IWK---STVLGSVIVTVESE 102 (315)
Q Consensus 60 ~w~e~f~f~v~~~-~~~L~~~V~d~d~---------------------------------~~~---dd~iG~~~i~l~~l 102 (315)
+|+|.|.|++.+. ...+.+-+||+|. .+. |||+|++.|||.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999999999764 5689999999982 133 89999999999998
Q ss_pred -CCcccEEEEccCCC------ceEEEEEEeec
Q 021238 103 -GQTGAVWYTLDSPS------GQVCLHIKTIK 127 (315)
Q Consensus 103 -~~~~~~w~~L~~~~------G~i~~~l~~~~ 127 (315)
..+.++||.|++++ |++++.+.+..
T Consensus 271 P~~Gld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 271 PPDGLDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred CcchHHHHhccCcccccccccceEEEEEEEee
Confidence 45678999999753 77777766543
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.08 E-value=6.1e-10 Score=85.53 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=70.2
Q ss_pred EEEEEEEeecCCCCC---CCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238 16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d---~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~ 91 (315)
|.|+|.+|+|+...+ +.+.+||||.++++.. +.||++. .||.|||+|.|++. ....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 679999999999988 6788999999999766 7788874 79999999999995 47889999999864 34568
Q ss_pred eEEEEEEcccC
Q 021238 92 LGSVIVTVESE 102 (315)
Q Consensus 92 iG~~~i~l~~l 102 (315)
||...+.++++
T Consensus 76 i~llW~~~sdi 86 (109)
T cd08689 76 VGLLWLRLSDI 86 (109)
T ss_pred eeeehhhHHHH
Confidence 99999999885
No 115
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.07 E-value=1.8e-09 Score=106.57 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=83.5
Q ss_pred eeEEEEEEEEeecCC----C--CCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEE
Q 021238 13 AYLIKLELLAAKNLI----G--ANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~----~--~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V 80 (315)
...|+|+|+.|+++. . .+.....||||+|.+ +..+.+|+++.++.||.|+|+|.|.+..+ -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 1 122345799999998 24567999999999999999999998643 46799999
Q ss_pred EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
||+|..+.++|+|++.+|+..+..+ -+.++|..+.|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~ 567 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE 567 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence 9999888899999999999999765 446677655543
No 116
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.06 E-value=5e-10 Score=111.06 Aligned_cols=104 Identities=21% Similarity=0.326 Sum_probs=83.3
Q ss_pred EEEEEEEEeecCCCCC-C---CCCCceEEEEEE-----CCEEEEeeccc-CCCCCeecceEEEEecCC-CcEEEEEEEec
Q 021238 15 LIKLELLAAKNLIGAN-L---NGTSDPYAIITC-----GSEKRFSSMVP-GSRYPMWGEEFNFSVDEL-PVQIIVTIYDW 83 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d-~---~g~sDPyv~v~l-----~~~~~rT~vi~-~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~ 83 (315)
.|+|.|+++.++.+.. . ...+||||.|.+ +....+|+++. ++.||.|+|+|+|.+..+ -..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999766532 2 245899999998 23456999555 779999999999999754 56799999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 021238 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV 119 (315)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~i 119 (315)
|..++|||+|+..+|+..+..+. +-++|..+.|+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy-RhVpL~~~~G~~ 731 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY-RHVPLLSREGEA 731 (746)
T ss_pred CCCCcccccceeeccHHHhhCce-eeeeecCCCCcc
Confidence 99999999999999999997653 456776666664
No 117
>PLN02228 Phosphoinositide phospholipase C
Probab=99.04 E-value=3.4e-09 Score=104.43 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=82.7
Q ss_pred eeEEEEEEEEeecCC---CC---CCCCCCceEEEEEE-----CCEEEEeecccCCCCCee-cceEEEEecCC-CcEEEEE
Q 021238 13 AYLIKLELLAAKNLI---GA---NLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW-GEEFNFSVDEL-PVQIIVT 79 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~---~~---d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w-~e~f~f~v~~~-~~~L~~~ 79 (315)
...|+|+|++|++|+ +. +.....||||+|.+ +..+.+|+++.++.||.| +|+|.|.+..+ -.-|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 347999999999873 11 22344799999998 334569999998899999 99999998643 4579999
Q ss_pred EEecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (315)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (315)
|+|+|..+.++|+|++.+|+..+..+ -+.++|..+.|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~ 547 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK 547 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence 99999888899999999999999654 456688654443
No 118
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=5.7e-09 Score=100.36 Aligned_cols=112 Identities=18% Similarity=0.329 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCCCCCCC-CCceEEEEEECCEEEEeecccCCCCCeec-ceEEEEecC---CCcEEEEEEEecCCCCC
Q 021238 14 YLIKLELLAAKNLIGANLNG-TSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDE---LPVQIIVTIYDWDIIWK 88 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g-~sDPyv~v~l~~~~~rT~vi~~tlnP~w~-e~f~f~v~~---~~~~L~~~V~d~d~~~~ 88 (315)
|+|.|.|..|++|+-+|..+ ..|.||.+++.+..++|.+..+++||.|| +.|.|++.+ .+.+|.+.+.|+|..+.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 68899999999999998543 47999999999999999999999999999 779999975 36789999999999999
Q ss_pred CceeEEEEEEcccC------------CCcccEEEEccC----CCceEEEEEEe
Q 021238 89 STVLGSVIVTVESE------------GQTGAVWYTLDS----PSGQVCLHIKT 125 (315)
Q Consensus 89 dd~iG~~~i~l~~l------------~~~~~~w~~L~~----~~G~i~~~l~~ 125 (315)
+|-||.+.|.++.+ +.-...|+|+-. -.|+|.+.+++
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 99999999999875 122457999853 34776655553
No 119
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.73 E-value=5.2e-08 Score=96.87 Aligned_cols=99 Identities=15% Similarity=0.260 Sum_probs=79.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEE-EeecccCCCCCeec-ceEEEEecCC-CcEEEEEEEecC
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKR-FSSMVPGSRYPMWG-EEFNFSVDEL-PVQIIVTIYDWD 84 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~-rT~vi~~tlnP~w~-e~f~f~v~~~-~~~L~~~V~d~d 84 (315)
...|.|.|+.|+.|+... .|...|||.|.+ +..++ +|.|+.|++||+|| |+|+|.+.++ -.-|+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 467899999999998543 455679999998 33444 55667799999999 9999999765 557999999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238 85 IIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (315)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l~~~~~~w~~L~ 113 (315)
.++...|||++..|+..+..+ -.-++|.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLk 1170 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLK 1170 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc-ceeeecc
Confidence 999989999999999987543 2345664
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.68 E-value=1.2e-08 Score=103.40 Aligned_cols=97 Identities=22% Similarity=0.431 Sum_probs=84.6
Q ss_pred CCCCCC-CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEE--EeecccCCCCCeecceEEEEecC-CCcEEEEEE
Q 021238 5 KGDPQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTI 80 (315)
Q Consensus 5 ~~~~~~-~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~--rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V 80 (315)
.+.++. +-...++|+|++|-+|.+.|.+|.+|||+++.++.... ++..+.+|+||+|.+.|.+...- ....|.++|
T Consensus 603 ~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~v 682 (1105)
T KOG1326|consen 603 LDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEV 682 (1105)
T ss_pred hcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEE
Confidence 344445 44677889999999999999999999999999987764 78899999999999999998764 366799999
Q ss_pred EecCCCCCCceeEEEEEEccc
Q 021238 81 YDWDIIWKSTVLGSVIVTVES 101 (315)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~ 101 (315)
||+|..++|+.||+..++|+.
T Consensus 683 yd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 683 YDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred EEeecccccchhhceehhhhh
Confidence 999999999999999999986
No 121
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=98.61 E-value=1.2e-07 Score=94.61 Aligned_cols=276 Identities=25% Similarity=0.252 Sum_probs=182.4
Q ss_pred CCCCCCCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEE
Q 021238 3 QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIY 81 (315)
Q Consensus 3 ~~~~~~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~ 81 (315)
..++.......+...+..+.+.++.....++.++|+..+..........+.....+|.|++.+.|.-... -....+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf 165 (590)
T KOG1032|consen 86 GLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPF 165 (590)
T ss_pred CCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEee
Confidence 3455555666677777777777777766677889999998877777788888899999999999975432 234455566
Q ss_pred ecCCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEeecCccccccccccccccccccccccccCCCc
Q 021238 82 DWDII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT 156 (315)
Q Consensus 82 d~d~~-~~dd~iG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~~~ 156 (315)
+++.. .+..-.|.+...+.- .......|..|..+.+.-. +.+.....+....++..+++....... .-+.+.+.
T Consensus 166 ~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~-~~~~~~~~ 244 (590)
T KOG1032|consen 166 DEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEV-NDDQQGNV 244 (590)
T ss_pred eeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCc-Cccccccc
Confidence 65432 222333433322222 2445567888887665433 222222222222222333333221111 11113345
Q ss_pred ccccCCCCceeeccCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCc
Q 021238 157 VVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA 236 (315)
Q Consensus 157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~ 236 (315)
+..+.+..+...|++|.+|.+...++|.+.+..+++|+++++....+|++..||..+++...++++..++-.......+.
T Consensus 245 ~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~ 324 (590)
T KOG1032|consen 245 DNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPR 324 (590)
T ss_pred ccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCC
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999887777776
Q ss_pred ---EEEEEecCCCCCCCCCCCCCC--CceEEEEeeecchHHHHHHHHHHHH
Q 021238 237 ---ITIILRMGAGGHGVPPLGSPD--GRVRYKFASFWNRNHALRQLQRTAK 282 (315)
Q Consensus 237 ---i~i~~~~g~~~~~~~~~~~~~--~~~~~~F~sf~~rd~~~~~l~~~~~ 282 (315)
...+...+.|+|+..+-.++. +...+.|..+... ++++....-
T Consensus 325 ~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~ 372 (590)
T KOG1032|consen 325 SGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLT 372 (590)
T ss_pred ccceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheecc
Confidence 444444444466655533333 5566777776653 444444433
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.58 E-value=1.7e-07 Score=92.26 Aligned_cols=105 Identities=24% Similarity=0.419 Sum_probs=79.5
Q ss_pred EEeecCCCCCCCCCCceEEEEEECCEE----EEeecccCCCCCeecceEEEEecCC----------------CcEEEEEE
Q 021238 21 LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI 80 (315)
Q Consensus 21 i~A~~L~~~d~~g~sDPyv~v~l~~~~----~rT~vi~~tlnP~w~e~f~f~v~~~----------------~~~L~~~V 80 (315)
++++++.|.+ ++.+|||+++...... .+|.++++|.+|.|+|.|.|.+... -..|++.+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4555666655 6679999999884332 4999999999999999999988532 23589999
Q ss_pred Ee-cCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-----------CceEEEEEEee
Q 021238 81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-----------SGQVCLHIKTI 126 (315)
Q Consensus 81 ~d-~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-----------~G~i~~~l~~~ 126 (315)
|+ ++....++|+|++.+++... ......||-|+++ -|.+++.+.+.
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 98 56666699999999999886 4566789999752 15566666544
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.57 E-value=3.8e-08 Score=96.22 Aligned_cols=108 Identities=20% Similarity=0.318 Sum_probs=90.1
Q ss_pred ccccCCCCceeeccCCcccceeecceeeeee---ecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccc
Q 021238 157 VVHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI 233 (315)
Q Consensus 157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~---~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~ 233 (315)
+.+.+++.| .+|++| |++.....|.++. ....+|+||+|.+|+||.|..+. -+.+++|+..|..|++.+....
T Consensus 5 ~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~ 80 (671)
T KOG4347|consen 5 DARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSL 80 (671)
T ss_pred hhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCcccc
Confidence 456678889 999999 9999999999987 45578999999999999999976 5899999999999999985444
Q ss_pred cC-cEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHh
Q 021238 234 NP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKN 283 (315)
Q Consensus 234 ~~-~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~ 283 (315)
++ -|.++|+ +...+.|..+.+|+..+--+..+...
T Consensus 81 ~~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~~~~ 116 (671)
T KOG4347|consen 81 FTQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLPPAR 116 (671)
T ss_pred chhhhHHhhc---------------CcceEEecchhhHHHHHHHHhchHhh
Confidence 55 5777775 45789999999999987766665543
No 124
>PLN02352 phospholipase D epsilon
Probab=98.48 E-value=1.3e-06 Score=88.43 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=83.9
Q ss_pred ceeEEEEEEEEeecCCCC----CC-CCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCC-cEEEEEEEecC
Q 021238 12 SAYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD 84 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~----d~-~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~-~~L~~~V~d~d 84 (315)
-.|.|.++|.+|+-+... +. ....||||.|.++... .|| .+..||.|+|.|.+.+.... ..+.|.|-|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 479999999999844332 11 1123999999996554 488 55669999999999997655 689999987
Q ss_pred CCCCCceeEEEEEEcccC--CCc-ccEEEEccCC-----C-ceEEEEEEeecCccc
Q 021238 85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSP-----S-GQVCLHIKTIKLPVN 131 (315)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l--~~~-~~~w~~L~~~-----~-G~i~~~l~~~~~~~~ 131 (315)
...+||.+.+|+.++ +.. .+.|+++... . .++++++.+.+....
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 367999999999997 323 7899999532 2 367788887766544
No 125
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.39 E-value=7.2e-07 Score=86.48 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCCCCCCCCCceEEEEEEC-------------------CEEEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCC
Q 021238 26 LIGANLNGTSDPYAIITCG-------------------SEKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI 85 (315)
Q Consensus 26 L~~~d~~g~sDPyv~v~l~-------------------~~~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~ 85 (315)
+...|..+++||-|.+... ....+|+++.+.+||.|.+.|.+.+. +..+.|++.++|.+.
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence 4455667777777776541 12238999999999999999999874 668889999999874
Q ss_pred C----CCCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEeecCccccccccccccccccccccccccCCC
Q 021238 86 I----WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP 155 (315)
Q Consensus 86 ~----~~dd~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~~ 155 (315)
. ..++|+|++.+.+..+......-.+|.. ..|.+.+... .....+ ...+......+++.
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~ae----e~~~~~-------~~~~~~~~~~~ld~ 150 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAE----EDESDN-------DVVQFSFRAKNLDP 150 (529)
T ss_pred ccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEee----cccccC-------ceeeeeeeeeecCc
Confidence 4 4579999999999987433332222221 2343333322 222111 11222233467789
Q ss_pred cccccCCCCceeeccCC---------cccceeecceeeeee-ecccc----eeEEeecceeeeeecCCCc
Q 021238 156 TVVHQKPGPLQTIFNLL---------PDEFVELSYSCVIER-SFLYH----GRMYVSAWHICFHSNAFSR 211 (315)
Q Consensus 156 ~~~~~k~~~f~~~F~lp---------~~E~l~~~~~c~l~~-~~~~~----G~lyis~~~~cF~s~~~g~ 211 (315)
+++..++++|...++.- ..|.+.++.++.|.. .++.+ +.+-.+...+|++.+..|+
T Consensus 151 kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 151 KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence 99999999999999553 238899999999988 55555 5556777788999888775
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=4.7e-07 Score=82.25 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=82.3
Q ss_pred CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~ 81 (315)
.....-+.|+++.|..|..+|.+|-+||||..++. ..+++|.+.+++++|.|++.|.+++.+ ....+.+.||
T Consensus 229 ~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvg 308 (362)
T KOG1013|consen 229 SSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVG 308 (362)
T ss_pred CcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeec
Confidence 34466688999999999999999999999999983 235599999999999999999999864 3567999999
Q ss_pred ecCCCCCCceeEEEEEEcccCCCcccEEE
Q 021238 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWY 110 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~ 110 (315)
|++.....+++|-....+...+.-.+.|.
T Consensus 309 d~~~G~s~d~~GG~~~g~~rr~~v~~h~g 337 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSMLGGYRRGEVHKHWG 337 (362)
T ss_pred ccCCCcCccCCCcccccccccchhhcCcc
Confidence 99987788899987776665544444443
No 127
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.26 E-value=8.2e-07 Score=91.61 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=85.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEEEe
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYD 82 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V~d 82 (315)
..|+|.|-|.-|++|.-..-+..+||||+.++. ..+.+|+++++|.||.|||....+- .. ..+.|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 468899999999999766657789999999992 3456999999999999999988872 21 24679999999
Q ss_pred cCCCCCCceeEEEEEEcccCC--CcccEEEEccC
Q 021238 83 WDIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS 114 (315)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~ 114 (315)
.+....+.|+|.+.|+|.++. .+...||.|..
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 999888999999999999864 44458999964
No 128
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=9e-06 Score=79.64 Aligned_cols=101 Identities=18% Similarity=0.318 Sum_probs=82.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C------CEEEEeecccCCCCCeecceEEEEecCC----CcEEEEEEE
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIY 81 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~------~~~~rT~vi~~tlnP~w~e~f~f~v~~~----~~~L~~~V~ 81 (315)
+..++|.|+.|.+|+-.. .|.--|||.+.+ + ..+..|+...++..|.|||+|.|-+... .-.|.|.|-
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 567889999999998764 778899999988 2 3345788888999999999999998642 235999999
Q ss_pred ecCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (315)
|+.-...|..+|.+.++|.++ .+....|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 988666789999999999997 455678999964
No 129
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.88 E-value=2.6e-05 Score=62.12 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=72.8
Q ss_pred EEEEEEEeecCCCCC-----------C--CCCCceEEEEEE----CCEEEEeecccCCCCCeecceEEEEec--------
Q 021238 16 IKLELLAAKNLIGAN-----------L--NGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD-------- 70 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d-----------~--~g~sDPyv~v~l----~~~~~rT~vi~~tlnP~w~e~f~f~v~-------- 70 (315)
|.|.|++|.+|+... . .-.-++||.+.+ +.+..+|+++.++-.|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888998887421 1 112489999986 456679999999999999999999764
Q ss_pred C--------CCcEEEEEEEecCC----------CCCCceeEEEEEEcccC---CCcccEEEEc
Q 021238 71 E--------LPVQIIVTIYDWDI----------IWKSTVLGSVIVTVESE---GQTGAVWYTL 112 (315)
Q Consensus 71 ~--------~~~~L~~~V~d~d~----------~~~dd~iG~~~i~l~~l---~~~~~~w~~L 112 (315)
+ ....+.|+||+... ..+|-.+|.+.||+.++ ..+...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 12348999999762 23466899999999996 5667889875
No 130
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.83 E-value=2.4e-05 Score=58.05 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred EEEEEEeecCCCCCCCCC-CceEEE--EEEC-CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCCC
Q 021238 17 KLELLAAKNLIGANLNGT-SDPYAI--ITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKS 89 (315)
Q Consensus 17 ~V~Ii~A~~L~~~d~~g~-sDPyv~--v~l~-~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~d 89 (315)
-|+++.|++|.-....|. +.-|++ +.+. ....+|.+.....||.|.|+|.|.+.. .+..|.|.|+. .+.+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 478999999975432222 233444 2333 445699999999999999999998853 35679999998 45678
Q ss_pred ceeEEEEEEcccCCC-cccEEEE
Q 021238 90 TVLGSVIVTVESEGQ-TGAVWYT 111 (315)
Q Consensus 90 d~iG~~~i~l~~l~~-~~~~w~~ 111 (315)
+.||++.+.++++++ +..+|.+
T Consensus 80 e~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHHHhhhhhc
Confidence 899999999999854 4566754
No 131
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.77 E-value=3.8e-05 Score=74.71 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=67.1
Q ss_pred EEEeecCCCCCCCCCCceEEEEEEC---C---EEEEeecccCCCCCeecceEEEEec-----CCCcEEEEEEEecCCCCC
Q 021238 20 LLAAKNLIGANLNGTSDPYAIITCG---S---EKRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDIIWK 88 (315)
Q Consensus 20 Ii~A~~L~~~d~~g~sDPyv~v~l~---~---~~~rT~vi~~tlnP~w~e~f~f~v~-----~~~~~L~~~V~d~d~~~~ 88 (315)
.++|++|.++|.++++|||..++-. . ..++|++++++++|.|.+ |.+... +...++.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3558999999999999999988652 1 234999999999999954 444432 456789999999999999
Q ss_pred CceeEEEEEEcccCC
Q 021238 89 STVLGSVIVTVESEG 103 (315)
Q Consensus 89 dd~iG~~~i~l~~l~ 103 (315)
+++||.+..++.++.
T Consensus 221 ~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQ 235 (529)
T ss_pred cCceeEecccHHHhc
Confidence 999999999988763
No 132
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=1.9e-05 Score=73.14 Aligned_cols=103 Identities=15% Similarity=0.249 Sum_probs=85.2
Q ss_pred ceeEEEEEEEEeecCCCCCC-CCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEE-ecC
Q 021238 12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD 84 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~-d~d 84 (315)
..|.|.|.|++|++|..+.- ...++|||+|++- . .+.+|+...+|++|.+.....|+-..+...|.+.|| |+.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 47889999999999987653 3368999999982 1 234888899999999988888887777888999999 688
Q ss_pred CCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 021238 85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS 114 (315)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~ 114 (315)
++..+.|+|.+++-+++++ .....||+|-+
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 8888999999999999973 35678999965
No 133
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=4.8e-06 Score=75.78 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=76.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe--cC--CCcEEEEEEEe
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYD 82 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v--~~--~~~~L~~~V~d 82 (315)
....+..++..|++|++++.++..|||+.+.+. ..+.+|++..+++||.|+|+-.... .+ ....+++.|.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence 455678999999999999999999999999883 2346888999999999998876653 22 13458889999
Q ss_pred cCCCCCCceeEEEEEEcccCCC
Q 021238 83 WDIIWKSTVLGSVIVTVESEGQ 104 (315)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l~~ 104 (315)
.+.+..++++|+..+++..+.+
T Consensus 171 n~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 171 NDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred CcccccccCcccchhhhhccCh
Confidence 9999999999999988887643
No 134
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.73 E-value=5.2e-06 Score=84.75 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=84.5
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEec----------CCCcEEEE
Q 021238 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIV 78 (315)
Q Consensus 9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~----------~~~~~L~~ 78 (315)
+......+++.|.+|+.|...|..+.+|||+.+..-.+.+.|.++.+|+||.|+.+..|.-. .....+.|
T Consensus 201 ~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 201 SEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred chhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 34456677888899999999999999999999999888999999999999999999988521 12334889
Q ss_pred EEEecCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 021238 79 TIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (315)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~ 113 (315)
+|||.|+.+.++|+|.......-. ..+.-.|+++-
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~ 316 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM 316 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEecCCccceEEee
Confidence 999999999999999976654332 34556787774
No 135
>PLN02964 phosphatidylserine decarboxylase
Probab=97.68 E-value=7.7e-05 Score=75.13 Aligned_cols=83 Identities=14% Similarity=0.269 Sum_probs=69.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEE-EEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCc
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYA-IITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv-~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd 90 (315)
.|.+.+++++|+ ++ ..|||. ++.++.+.+||.+.++|+||+||+...|.+.+ ...-.++.|||.+.+++++
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 688889999987 33 358864 56789999999999999999999998888854 2334699999999999999
Q ss_pred eeEEEEEEcccC
Q 021238 91 VLGSVIVTVESE 102 (315)
Q Consensus 91 ~iG~~~i~l~~l 102 (315)
++|.+.++|.+.
T Consensus 126 lv~~~e~~~t~f 137 (644)
T PLN02964 126 LVGYCELDLFDF 137 (644)
T ss_pred hhhheeecHhhc
Confidence 999999988765
No 136
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=97.33 E-value=0.00041 Score=53.97 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=62.3
Q ss_pred eeecceeeeee-ecccceeEEeecceeeeeec---------------CCCceeEEEEecCceeEEEeeccccccCcEEEE
Q 021238 177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240 (315)
Q Consensus 177 l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~---------------~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~ 240 (315)
+.-.+.|.+-. ...+.|.+.++.+++.|..+ .........+|+.||..|.+..-..=.-||+|.
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF 81 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF 81 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence 44568899987 45567999999999999876 233345688999999999987754333399999
Q ss_pred EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHH
Q 021238 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL 277 (315)
Q Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l 277 (315)
+.+| ....+.|.+...||++|+.|
T Consensus 82 ~~dg-------------~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 82 FSDG-------------RSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp ETTS--------------EEEEE-SSHHHHHHHHCCS
T ss_pred EcCC-------------cEEEEEcCCHHHHHHHHHhh
Confidence 9876 44566677778899888654
No 137
>PF14470 bPH_3: Bacterial PH domain
Probab=97.30 E-value=0.0071 Score=45.68 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCcccceeecceeeeee-ecccceeEEeecceeeeeecC-CCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCC
Q 021238 171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH 248 (315)
Q Consensus 171 lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~ 248 (315)
|.++|.+.....|.+.. .-...|-+.+|...+-|.+.. ++......|||++|.+|+..+.. +...|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~------- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET------- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence 45788899888888774 223349999999888888765 66788899999999999998654 446788888
Q ss_pred CCCCCCCCCCceEEEEeeecchHHHHHHH
Q 021238 249 GVPPLGSPDGRVRYKFASFWNRNHALRQL 277 (315)
Q Consensus 249 ~~~~~~~~~~~~~~~F~sf~~rd~~~~~l 277 (315)
+..++.|.++ +.+++-..+
T Consensus 73 ---------~~~~~~i~~i-~k~~~~~~~ 91 (96)
T PF14470_consen 73 ---------NGEKIKIDNI-QKGDVKEFY 91 (96)
T ss_pred ---------CCEEEEEEEc-CHHHHHHHH
Confidence 3479999988 565554433
No 138
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.39 E-value=0.0065 Score=62.11 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=69.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C------CEEEEeeccc-CCCCCeecc-eEEEEe--cCCCcEEEEEEE
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVP-GSRYPMWGE-EFNFSV--DELPVQIIVTIY 81 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~------~~~~rT~vi~-~tlnP~w~e-~f~f~v--~~~~~~L~~~V~ 81 (315)
.+.+.|+||++.-|.+++ ...||.|.+ + ...+||+++. ++.||+|+| .|.|.- -+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 678899999999998775 448999987 2 2345888887 679999995 488863 233567999999
Q ss_pred ecCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~ 114 (315)
+.. ..|||+-.+|++.+..+ -+.+.|..
T Consensus 778 eEg----gK~ig~RIlpvd~l~~G-Yrhv~LRs 805 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAG-YRHVCLRS 805 (1189)
T ss_pred ccC----CceeeeeccchhcccCc-ceeEEecC
Confidence 864 46999999999988654 33444543
No 139
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.30 E-value=0.045 Score=46.53 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWD 84 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d 84 (315)
.+.|+|+++.+|... ....+-||.+.+ +... ..|+.+.-+..+.|||.+.|++. +....|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 578999999999752 234566777655 4332 25555554567999999999764 24678999999975
Q ss_pred CCC----------------CCceeEEEEEEcccC
Q 021238 85 IIW----------------KSTVLGSVIVTVESE 102 (315)
Q Consensus 85 ~~~----------------~dd~iG~~~i~l~~l 102 (315)
... .+..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 322 246889998888764
No 140
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.29 E-value=0.049 Score=45.54 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEEE----EeecccCCCCCeecceEEEEec----CCCcEEEEEEEec
Q 021238 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDW 83 (315)
Q Consensus 14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~~----rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~ 83 (315)
..++|+|+++.++.-.+ .+|-||.+.+ +.... .|..+.. .++.|||...|++. +....|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 35789999999987543 4688888866 43322 4443433 67999999999874 2467899999997
Q ss_pred CCCC----CCceeEEEEEEcccC
Q 021238 84 DIIW----KSTVLGSVIVTVESE 102 (315)
Q Consensus 84 d~~~----~dd~iG~~~i~l~~l 102 (315)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 235799999998774
No 141
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.99 E-value=0.0085 Score=56.55 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=79.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CC---------cE
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LP---------VQ 75 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~---------~~ 75 (315)
.-.|.+.|+++.++.-....-..|-|+++... ..+.+|.++++|..|.|+|.|.+.+.. .. ..
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 34566777888777643222235788888762 334589999999999999999999864 11 22
Q ss_pred EEEEEEecCCC-CCCceeEEEEEEcccCCCc--ccEEEEccC----CCceEEEEEEee
Q 021238 76 IIVTIYDWDII-WKSTVLGSVIVTVESEGQT--GAVWYTLDS----PSGQVCLHIKTI 126 (315)
Q Consensus 76 L~~~V~d~d~~-~~dd~iG~~~i~l~~l~~~--~~~w~~L~~----~~G~i~~~l~~~ 126 (315)
++|++|+...+ .+|.++|.+.+.|..+... ....++|.. -.|++.+++.+.
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 89999998754 4588999999999887433 344566642 247777777654
No 142
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.89 E-value=0.071 Score=44.30 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=59.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWD 84 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d 84 (315)
.++|++....++...+ ....+-||.+.+ +... ..|.......++.|||...|++. +....|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5677888877776521 234566777655 3322 24433333468999999999863 24678999999987
Q ss_pred CCC--CCceeEEEEEEcccC
Q 021238 85 IIW--KSTVLGSVIVTVESE 102 (315)
Q Consensus 85 ~~~--~dd~iG~~~i~l~~l 102 (315)
..+ .+..||.+.++|-+-
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 554 468999999999774
No 143
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.75 E-value=0.058 Score=45.17 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238 33 GTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 33 g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (315)
..+|-||.+.+ +... .+|..+.-+..+.|||...|.+. +....|.|.|||.+..+....+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778888766 3332 25655555667899999999874 24678999999988666678999999999775
No 144
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.51 E-value=0.078 Score=44.90 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=64.0
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEEE----Eeeccc--C--CCCCeecceEEEEec----CCCcEEEE
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP--G--SRYPMWGEEFNFSVD----ELPVQIIV 78 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~~----rT~vi~--~--tlnP~w~e~f~f~v~----~~~~~L~~ 78 (315)
...+.|+|.++.+++........|-|+.+.+ +.+.. .|+... + ...+.|||...|++. +....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4567899999999988765556888888866 43332 443221 1 235789999998874 24678999
Q ss_pred EEEecCCCC---------CCceeEEEEEEcccC
Q 021238 79 TIYDWDIIW---------KSTVLGSVIVTVESE 102 (315)
Q Consensus 79 ~V~d~d~~~---------~dd~iG~~~i~l~~l 102 (315)
.+|+....+ .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 357999999998774
No 145
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.42 E-value=0.27 Score=40.85 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=69.5
Q ss_pred CCceeEEEEEEEEeecCCCCCC--CCCCceEEEEEE--CCEEEEeecccCCCCCeecceEEEEecCC-------------
Q 021238 10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITC--GSEKRFSSMVPGSRYPMWGEEFNFSVDEL------------- 72 (315)
Q Consensus 10 ~~~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l--~~~~~rT~vi~~tlnP~w~e~f~f~v~~~------------- 72 (315)
.+....|.+.|..++-...--- -+..++...+.+ .++.++|+.+..+.+|.|+|.|.|++...
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3456779999999875543211 155566666555 78899999999999999999999998532
Q ss_pred -CcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238 73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 73 -~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (315)
.+++.+.|.--|..+...++|+-.+.-..+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 245888888877776668999988887775
No 146
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.41 E-value=0.26 Score=37.08 Aligned_cols=85 Identities=13% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCceEEEEEECCEEE-EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccCCCcccEEEE
Q 021238 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT 111 (315)
Q Consensus 33 g~sDPyv~v~l~~~~~-rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~ 111 (315)
|.++-.+++++++... +|.-.. ..+..|++.|.+++.. ...|++.||=.|. ..+.|-..+-|.+.. ...-.+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~--~~~~~~ 79 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER--HEVQLD 79 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc--ccceec
Confidence 3367788999987544 664433 3578999999999976 6789999997664 246777888888742 244566
Q ss_pred ccCCCceEEEEEEe
Q 021238 112 LDSPSGQVCLHIKT 125 (315)
Q Consensus 112 L~~~~G~i~~~l~~ 125 (315)
|.| .|.+...+++
T Consensus 80 lep-qg~l~~ev~f 92 (98)
T cd08687 80 MEP-QLCLVAELTF 92 (98)
T ss_pred ccc-ccEEEEEEEe
Confidence 766 6777777765
No 147
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.29 E-value=0.37 Score=45.32 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=82.8
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC--------CCcEEEEEEEecC-CC
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II 86 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~--------~~~~L~~~V~d~d-~~ 86 (315)
+.|.|++|++.+... .-.-.+...++.....|..+..+-.|.|+....-+++. ...+|++++|..| ..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998652 34456667889999999999999999999988877642 3567999999998 55
Q ss_pred CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEeecC
Q 021238 87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL 128 (315)
Q Consensus 87 ~~dd~iG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~~~l~~~~~ 128 (315)
+..+.||.+.++|... . .....||+|..- +-++.+.+.+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 6778999999999886 2 234579999642 2345555555443
No 148
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=95.09 E-value=0.17 Score=47.07 Aligned_cols=101 Identities=24% Similarity=0.283 Sum_probs=78.6
Q ss_pred cCCcccceeecceeeeeeecc--cceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCC
Q 021238 170 NLLPDEFVELSYSCVIERSFL--YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG 247 (315)
Q Consensus 170 ~lp~~E~l~~~~~c~l~~~~~--~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~ 247 (315)
.+-++|.+.+.++-.|.-+-. --|.+++|.-.+.|++.... .-.+.|||-+|.+|....+ ++++|+.|.|....|
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne-~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~sG- 226 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNE-SFNVSIPYLQIKSIRIRDS-KFGPALVIETSESSG- 226 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCc-cccccchHhhheeeeeecc-ccceEEEEEEeccCC-
Confidence 556788999999988876221 11999999999999998754 7789999999999987766 789999999976433
Q ss_pred CCCCCCCCCCCceEEEEeeecc---h-HHHHHHHHHHHHhhhh
Q 021238 248 HGVPPLGSPDGRVRYKFASFWN---R-NHALRQLQRTAKNYHT 286 (315)
Q Consensus 248 ~~~~~~~~~~~~~~~~F~sf~~---r-d~~~~~l~~~~~~~~~ 286 (315)
.|...--++ | ++.|+-|..||+.+.+
T Consensus 227 -------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~~ 256 (339)
T PF07289_consen 227 -------------GYVLGFRVDPEERLQELFKEIQSLHKVYSA 256 (339)
T ss_pred -------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence 566655555 2 6789999999986643
No 149
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.64 E-value=0.097 Score=47.96 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=73.4
Q ss_pred CceeEEEEEEEEeecCCCCCC--CCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC
Q 021238 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (315)
Q Consensus 11 ~~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~ 87 (315)
...|.|.+.++.+++|+-..- +-.-+-||++..+.+ +.||.+.....-=.|.|+|..++.. ...+.+-||.|+.--
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 457889999999999985432 334688999988654 3477766666677889999999876 567888899998655
Q ss_pred CCceeEEEEEEcccC-CCcccEEEEc--cCCCceEEEEEE
Q 021238 88 KSTVLGSVIVTVESE-GQTGAVWYTL--DSPSGQVCLHIK 124 (315)
Q Consensus 88 ~dd~iG~~~i~l~~l-~~~~~~w~~L--~~~~G~i~~~l~ 124 (315)
.+.+.-..-+.+..+ ....+..+.| ++ .|++-+++.
T Consensus 127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~ 165 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLP 165 (442)
T ss_pred hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecc
Confidence 554432223333332 2333433433 34 577666665
No 150
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.59 E-value=0.39 Score=40.98 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=53.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE---EEeecccCCCCCeecceEEEEec--C--CCcEEEEEEEecCC
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDI 85 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~---~rT~vi~~tlnP~w~e~f~f~v~--~--~~~~L~~~V~d~d~ 85 (315)
.++|+|.++.++ ..+......-||.+.+ +... .+|....-+.+|.|||...|++. + ....|.|.||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 467788777633 2222222334555544 3322 25666666678999999888874 2 46789999999742
Q ss_pred CC----------------CCceeEEEEEEcccC
Q 021238 86 IW----------------KSTVLGSVIVTVESE 102 (315)
Q Consensus 86 ~~----------------~dd~iG~~~i~l~~l 102 (315)
.. .+..||.+.+.|-+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcC
Confidence 21 145677777776553
No 151
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.85 E-value=0.38 Score=39.26 Aligned_cols=54 Identities=30% Similarity=0.347 Sum_probs=40.3
Q ss_pred EeecccCC-CCCeecceEEEEec----CCCcEEEEEEEecCCCCCC----ceeEEEEEEcccC
Q 021238 49 FSSMVPGS-RYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE 102 (315)
Q Consensus 49 rT~vi~~t-lnP~w~e~f~f~v~----~~~~~L~~~V~d~d~~~~d----d~iG~~~i~l~~l 102 (315)
.|....-+ .++.|+|...|.+. +....|.|.||..+..... ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999999873 3477899999998766555 6999999998775
No 152
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=93.52 E-value=0.51 Score=35.49 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=34.1
Q ss_pred eeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEE
Q 021238 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL 241 (315)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~ 241 (315)
|++|+|.+.++|--........+.||+.+|..++.....+ ..+..|+.
T Consensus 38 G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l 85 (89)
T PF11605_consen 38 GRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL 85 (89)
T ss_dssp EEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred CEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence 9999999999997554433457999999999996665543 44555554
No 153
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=92.38 E-value=0.75 Score=36.16 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=51.9
Q ss_pred eeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc--ccccCcEEEEEecCCCCCCCCCCCCCCCceEEE
Q 021238 186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFINPAITIILRMGAGGHGVPPLGSPDGRVRYK 263 (315)
Q Consensus 186 ~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~--~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~ 263 (315)
...+.-+|++.+-.+-+=||.+... +--+-|||.+|..|.-.-. -..+|-..|.|++ +.+|.
T Consensus 18 ~~g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~---------------~G~f~ 81 (118)
T PF06115_consen 18 YLGLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK---------------NGKFT 81 (118)
T ss_pred EecccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEEEEEECCCEEeeEEEEECC---------------CCEEE
Confidence 3345567999999888888876543 5668999999999977654 3456778899975 24899
Q ss_pred Eeeecch
Q 021238 264 FASFWNR 270 (315)
Q Consensus 264 F~sf~~r 270 (315)
|+|--+.
T Consensus 82 Fsskd~k 88 (118)
T PF06115_consen 82 FSSKDSK 88 (118)
T ss_pred EEECChH
Confidence 9986543
No 154
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=91.96 E-value=1.3 Score=33.87 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=45.8
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecCC
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDI 85 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d~ 85 (315)
+.+.+....++........+|-||.+.+ +... ..|..+.-...+.|||...|++. +....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4566666666655433333588888866 4332 25555544556999999988764 246789999999653
No 155
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=91.88 E-value=0.37 Score=37.42 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=60.1
Q ss_pred ceeecceeeeee-ecccceeEEeecceeeeeecC----C-Cce---------eEEEEecCceeEEEeeccccccCcEEEE
Q 021238 176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SRQ---------MKVIIPIGDIDEIQRSQHAFINPAITII 240 (315)
Q Consensus 176 ~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~----~-g~~---------~~~~i~~~~i~~i~k~~~~~~~~~i~i~ 240 (315)
.++-+..|.+.. -.-+.|++-||..++.|.-+. + +.. ....+++++|.+|-+..-.+=.-|++|.
T Consensus 2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF 81 (108)
T cd01201 2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELF 81 (108)
T ss_pred CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEE
Confidence 345567788877 444569999999999999642 1 111 1237899999999887764434499999
Q ss_pred EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHH
Q 021238 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (315)
Q Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~ 279 (315)
..+| .-.|-+|-+++...+++..
T Consensus 82 ~~d~----------------~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 82 LASR----------------TSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EeCC----------------ceEEEEeCcHHHHHHHHhh
Confidence 9643 3355667777777666543
No 156
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.87 E-value=5.7 Score=31.97 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=69.2
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEE---EEeeccc-CCCCCeecceEEEEec----C-----CCcEEEE
Q 021238 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMVP-GSRYPMWGEEFNFSVD----E-----LPVQIIV 78 (315)
Q Consensus 12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~---~rT~vi~-~tlnP~w~e~f~f~v~----~-----~~~~L~~ 78 (315)
....+.|+|.+..+++. ....-||+...+... ..|.... .+..-.|+++|.+.+. . ....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45678899999998876 223345555554432 3443333 4556899999988753 1 1335889
Q ss_pred EEEecCCCCCCceeEEEEEEcccCCC----cccEEEEccCC-C--ceEEEEEEeec
Q 021238 79 TIYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSP-S--GQVCLHIKTIK 127 (315)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l~~----~~~~w~~L~~~-~--G~i~~~l~~~~ 127 (315)
.|+.....++...+|.+.++|++... ....-++|... . ..+.+.|....
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 99987533333699999999999632 33445666543 3 33455555443
No 157
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=90.68 E-value=1.8 Score=31.73 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=41.9
Q ss_pred eeEEeecce--eeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCCCCCCCCceEEEEe
Q 021238 193 GRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFA 265 (315)
Q Consensus 193 G~lyis~~~--~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~ 265 (315)
|.||+++.. +-|-..-.+....+.||+.+|...+-+....----+.|+.+.+. +.....|.|+
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~----------~~~~~~f~F~ 78 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDS----------SEESKTFVFT 78 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTSC-------------CCCEEE-
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecCC----------cccceEEEEe
Confidence 999999999 99988655544479999999999877654321115778876531 1245678886
No 158
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=88.65 E-value=1.8 Score=36.91 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=33.8
Q ss_pred EEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCC---CceeEEEEEEccc
Q 021238 48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK---STVLGSVIVTVES 101 (315)
Q Consensus 48 ~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~---dd~iG~~~i~l~~ 101 (315)
..|.+...+.+|.|+|+|.+.+.. ...-|.|++++...-.+ ...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 367777788999999999999863 35679999999653322 2699999999987
No 159
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.62 E-value=6 Score=34.20 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=40.7
Q ss_pred EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCC----CCCceeEEEEEEccc
Q 021238 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVES 101 (315)
Q Consensus 47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~----~~dd~iG~~~i~l~~ 101 (315)
..+|-+...+.+|.|+|++.+.+.. .+.-|.|++++.... .....+|-+.+||-+
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~ 115 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ 115 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence 4578888888999999999999863 356799999885421 123568888888753
No 160
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=88.11 E-value=5.4 Score=34.32 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=40.7
Q ss_pred EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCC-C-CceeEEEEEEccc
Q 021238 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIW-K-STVLGSVIVTVES 101 (315)
Q Consensus 47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~-~-dd~iG~~~i~l~~ 101 (315)
..+|-+...+.+|.|+|++.+.+.. ...-|.|++++...-. + ...+|-+.+||-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4588888889999999999999863 3566999888754221 1 2568888888754
No 161
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.96 E-value=1.2 Score=34.55 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=47.2
Q ss_pred cceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecccc-ccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecc
Q 021238 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF-INPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269 (315)
Q Consensus 191 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~-~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~ 269 (315)
-.|++.+-..-+-||-+.. .+.-+.|||.+|..|--..+.. +++...|.|.+ +.+|.|+|--+
T Consensus 23 ~~GkiliGDkgfEFYn~~n-v~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~---------------~gk~~FaSkds 86 (122)
T COG4687 23 EYGKILIGDKGFEFYNDRN-VEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDT---------------QGKVRFASKDS 86 (122)
T ss_pred hcCeEEEcccceeecCCCC-hhheeEecHHHhheeheeehhhhhcceEEEEEcC---------------CceEEEEeCCc
Confidence 3599999877777765553 3777999999999876665443 78888888863 35999999654
No 162
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=86.12 E-value=9.6 Score=32.05 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCceEEEEEECCEEE-Eeeccc--CCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238 34 TSDPYAIITCGSEKR-FSSMVP--GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 34 ~sDPyv~v~l~~~~~-rT~vi~--~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (315)
+..-|+++.++++.. +|+... ....=.|++.|.+.+..-...|.++||.... ..+..|+++.+|+-..
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 346788888876544 554443 3344556899999998778899999999876 5788999999998664
No 163
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=85.55 E-value=8.1 Score=36.19 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=67.8
Q ss_pred ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc-ccc-c--CcEEEEEecCCCCCCCCCCCCCCCceEEEEeee
Q 021238 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFI-N--PAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (315)
Q Consensus 192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~-~~~-~--~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf 267 (315)
.|+|++|.-.+.|+|...- ...+.|=|.-|..|+.... +++ + .|+.|.++-+ +.+-.|.|+..
T Consensus 42 ~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~------------~~rfEFiFt~~ 108 (339)
T PF07289_consen 42 RGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN------------NTRFEFIFTNL 108 (339)
T ss_pred eeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC------------CceEEEEeccC
Confidence 3999999999999998643 5889999999999887642 222 2 3889988643 46677778866
Q ss_pred cchH---HHHHHHHHHHHhhhh-hhhhhhhhcc
Q 021238 268 WNRN---HALRQLQRTAKNYHT-MLEAEKKVRS 296 (315)
Q Consensus 268 ~~rd---~~~~~l~~~~~~~~~-~~~~~~~~~~ 296 (315)
.... ..|..+..+|++|.. .+-.|-+.|+
T Consensus 109 ~~~~~~~~lf~~v~~v~raY~ts~lYRelklR~ 141 (339)
T PF07289_consen 109 SPNSPRQRLFTSVQAVYRAYETSRLYRELKLRG 141 (339)
T ss_pred CCCCccchHHHHHHHHHHHHHHHhHhhhhhhhe
Confidence 4333 569999999999864 4566666654
No 164
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=82.70 E-value=3.3 Score=41.95 Aligned_cols=82 Identities=13% Similarity=0.265 Sum_probs=56.9
Q ss_pred ceeeeeeecccceeEEee----cceeeeeecC------------CCceeEEEEecCceeEEEeecccc------------
Q 021238 181 YSCVIERSFLYHGRMYVS----AWHICFHSNA------------FSRQMKVIIPIGDIDEIQRSQHAF------------ 232 (315)
Q Consensus 181 ~~c~l~~~~~~~G~lyis----~~~~cF~s~~------------~g~~~~~~i~~~~i~~i~k~~~~~------------ 232 (315)
|.|-|..+ .|.+||+ .=.++|.+.- -....-+.||+.||..++|.....
T Consensus 521 F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~g 597 (642)
T PF11696_consen 521 FPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWALG 597 (642)
T ss_pred eeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeecC
Confidence 55555543 2889998 4467887751 122455999999999999976421
Q ss_pred ---ccCcEEEE-EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHH
Q 021238 233 ---INPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280 (315)
Q Consensus 233 ---~~~~i~i~-~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~ 280 (315)
+..++.|+ ++ ....|.++-...||+.|+.|-.+
T Consensus 598 ~kEv~DGL~I~g~~---------------~g~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 598 EKEVVDGLVIVGDE---------------PGQEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred CcccccceEEeccC---------------CCCEEEEEecchHHHHHHHHHhc
Confidence 12245555 44 33799999999999999988764
No 165
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=82.51 E-value=6.1 Score=26.81 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=30.2
Q ss_pred eeEEeecceeeeeecCCCceeEEEEecCceeEEEe
Q 021238 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227 (315)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k 227 (315)
|.+++|.-.+.|+|... ....+.|||..|.+|..
T Consensus 21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV 54 (55)
T ss_pred eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence 99999999999999875 37889999999999853
No 166
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=79.00 E-value=5.8 Score=33.64 Aligned_cols=53 Identities=15% Similarity=0.304 Sum_probs=38.8
Q ss_pred EeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCC-----CCCceeEEEEEEccc
Q 021238 49 FSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-----WKSTVLGSVIVTVES 101 (315)
Q Consensus 49 rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~-----~~dd~iG~~~i~l~~ 101 (315)
-+.++..+.+|.|+++|.+.+.. +..-|.|++++...- .....+|-+.+||-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444899999999999853 355699999996622 235788998888876
No 167
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.43 E-value=9.8 Score=38.19 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=72.0
Q ss_pred ceeec-cCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecccccc-C--cEEEE
Q 021238 165 LQTIF-NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN-P--AITII 240 (315)
Q Consensus 165 f~~~F-~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~-~--~i~i~ 240 (315)
+...| -|+.+..+...|-|-+.. ...|.+++|.-.+-|.+..-+..--+-+|+.=|..++|...+.-+ + .+.|+
T Consensus 30 ~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~ 107 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEIT 107 (717)
T ss_pred ccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEE
Confidence 55666 455445556667788777 667999999999999998777677889999999999998743333 3 57777
Q ss_pred EecCCCCCCCCCCCCCCCceEEEEeeecchH-HHHHHHHH
Q 021238 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRN-HALRQLQR 279 (315)
Q Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd-~~~~~l~~ 279 (315)
.++ ....+|-|..+...- +-++.|.+
T Consensus 108 CKD-------------mr~lR~~fk~~~q~r~~~~e~L~~ 134 (717)
T KOG4471|consen 108 CKD-------------MRNLRCAFKQEEQCRRDWFERLNR 134 (717)
T ss_pred ecc-------------ccceeeecCcccccHHHHHHHHHH
Confidence 754 256789998885443 55555544
No 168
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=77.11 E-value=11 Score=32.21 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=40.9
Q ss_pred EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCC------CceeEEEEEEccc
Q 021238 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK------STVLGSVIVTVES 101 (315)
Q Consensus 47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~------dd~iG~~~i~l~~ 101 (315)
...|.|...+.+|.|+|++-+.+.. ...-|.|+.++.+--.+ ...+|-+.+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4578888889999999999998863 35569999998552211 3568888888765
No 169
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.06 E-value=0.78 Score=46.43 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=59.9
Q ss_pred CCCceEEEEEECCEEE-EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC---CCcccE
Q 021238 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQTGAV 108 (315)
Q Consensus 33 g~sDPyv~v~l~~~~~-rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l---~~~~~~ 108 (315)
...|||+-|.++.... .+.+.+.+..|.|+++|.+++.. ...+.+.|+.......+.+...+.+..++. ......
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 4568999988854433 55667789999999999999765 566778888765443443333333333332 234567
Q ss_pred EEEccCCCceEEEEEEee
Q 021238 109 WYTLDSPSGQVCLHIKTI 126 (315)
Q Consensus 109 w~~L~~~~G~i~~~l~~~ 126 (315)
|..+++ .|++...+.+.
T Consensus 105 w~~~~~-~g~~~~~~~~~ 121 (694)
T KOG0694|consen 105 WVLIEE-LGTLLKPAALT 121 (694)
T ss_pred cccccc-ccceeeeeccc
Confidence 988876 57776655544
No 170
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=74.75 E-value=14 Score=31.74 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=39.9
Q ss_pred EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCC--C-------CCceeEEEEEEccc
Q 021238 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII--W-------KSTVLGSVIVTVES 101 (315)
Q Consensus 47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~--~-------~dd~iG~~~i~l~~ 101 (315)
...|.|...+.+|.|.|++-+.+.- ...-|.|+.|+..-. . ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4578888888999999999998853 355699999996521 1 13457777777654
No 171
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=74.35 E-value=6.3 Score=41.30 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=63.2
Q ss_pred CceEEEEEECCEE-EEeecccCC-CCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEE
Q 021238 35 SDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWY 110 (315)
Q Consensus 35 sDPyv~v~l~~~~-~rT~vi~~t-lnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~ 110 (315)
.++|+.+.+.... .+|..+.+. .+|.|.+.|.+.+......+.+.+-+.+..+....+|.+.++...+ +.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 4889988886544 377777777 7899999998888777788899998888777678999999999886 35677898
Q ss_pred Ecc
Q 021238 111 TLD 113 (315)
Q Consensus 111 ~L~ 113 (315)
++.
T Consensus 218 ~Il 220 (887)
T KOG1329|consen 218 PIL 220 (887)
T ss_pred eee
Confidence 874
No 172
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=70.73 E-value=12 Score=29.16 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=32.6
Q ss_pred EEEEEE-CCEEEEeecccCCCCCeecceEEEEecC--------CCcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238 38 YAIITC-GSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 38 yv~v~l-~~~~~rT~vi~~tlnP~w~e~f~f~v~~--------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (315)
||.+.+ +-+.+.|.++. ..+|.++.+-.+.|.. ....+.++++..-. .....+|.+.+++.++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhh
Confidence 455544 34455666666 7899999887777742 14569999998763 3468999999999885
No 173
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=63.99 E-value=21 Score=28.38 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=45.0
Q ss_pred CcccccCCCCceeeccCC----------cccceeecceeeeeeecccc--e-e---EEeecceeeeeecCCCc---eeEE
Q 021238 155 PTVVHQKPGPLQTIFNLL----------PDEFVELSYSCVIERSFLYH--G-R---MYVSAWHICFHSNAFSR---QMKV 215 (315)
Q Consensus 155 ~~~~~~k~~~f~~~F~lp----------~~E~l~~~~~c~l~~~~~~~--G-~---lyis~~~~cF~s~~~g~---~~~~ 215 (315)
..+...++++|.++.-.+ ..+.+.++++|.|...+.+. - . ......+.+|+.+.++. --.+
T Consensus 30 ~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~ 109 (133)
T cd04009 30 PLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEA 109 (133)
T ss_pred CcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEE
Confidence 333445567777665332 22556778888887633222 1 0 11223345666655442 2368
Q ss_pred EEecCceeEEEeecccc
Q 021238 216 IIPIGDIDEIQRSQHAF 232 (315)
Q Consensus 216 ~i~~~~i~~i~k~~~~~ 232 (315)
.||+.+|..++-..++.
T Consensus 110 ~i~l~~l~~~~~~~~~~ 126 (133)
T cd04009 110 FLPLNDIPGVEDTSSAQ 126 (133)
T ss_pred EEeHHHCCccccccccc
Confidence 89999999998876553
No 174
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=62.67 E-value=6.7 Score=41.09 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=65.3
Q ss_pred CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEe
Q 021238 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82 (315)
Q Consensus 8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d 82 (315)
.+....|.+.+.+-+|..|+. ....||...++ ..+..|.++.+|..|.||+.|++.+.+ .+.++++.++
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~e 826 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTE 826 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhc
Confidence 355668899999999988864 34667776663 345589999999999999999988755 3445566666
Q ss_pred cC----------CCCCCceeEEEEEEcccCCCcccEEEE
Q 021238 83 WD----------IIWKSTVLGSVIVTVESEGQTGAVWYT 111 (315)
Q Consensus 83 ~d----------~~~~dd~iG~~~i~l~~l~~~~~~w~~ 111 (315)
.+ ....+...|...+.+.--.....-|+.
T Consensus 827 k~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d~d~~t 865 (1112)
T KOG4269|consen 827 KSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHDADWYT 865 (1112)
T ss_pred ccchHHHhhhccchhhcccccccccccCccccccccCcc
Confidence 54 222345566666665543333334443
No 175
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=59.48 E-value=62 Score=23.07 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=40.4
Q ss_pred ecceeeeeecCCCceeEEEEecCceeEEEeeccccccC-----cEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchHH
Q 021238 198 SAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-----AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNH 272 (315)
Q Consensus 198 s~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-----~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~ 272 (315)
..+++.-++-. . ..+ ||+.||..|++.++....| .|.|... ..+....|=.++++
T Consensus 6 ~~~~L~I~~G~-~-~~~--I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~----------------~~~~i~IsP~~~~~ 65 (74)
T PF06713_consen 6 EDDYLIIKCGF-F-KKK--IPIEDIRSIRPTKNPLSSPALSLDRLEIYYG----------------KYKSILISPKDKEE 65 (74)
T ss_pred eCCEEEEEECC-c-ccE--EEhHHccEEEecCCccccccccccEEEEEEC----------------CCCEEEEECCCHHH
Confidence 44455555542 2 222 9999999999997544443 5777763 12347788888888
Q ss_pred HHHHHHH
Q 021238 273 ALRQLQR 279 (315)
Q Consensus 273 ~~~~l~~ 279 (315)
..+.|.+
T Consensus 66 FI~~L~k 72 (74)
T PF06713_consen 66 FIAELQK 72 (74)
T ss_pred HHHHHHh
Confidence 8777765
No 176
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=55.03 E-value=19 Score=31.65 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.8
Q ss_pred eeEEEEecCceeEEEeeccccccCcEEEEEecC
Q 021238 212 QMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244 (315)
Q Consensus 212 ~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g 244 (315)
...|.||+.||.+|++.+..+..+-|.+++++|
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG 143 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDG 143 (213)
T ss_pred ceEEEEEhhheeeEEecCCCCCceEEEEEecCC
Confidence 558999999999999999877667799999876
No 177
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=54.45 E-value=52 Score=25.46 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCCcccccCCCCceeeccCCcc------cceeecceeeeeeecccc---eeEE-eecceeeeeecCCCce---eEEEEec
Q 021238 153 QGPTVVHQKPGPLQTIFNLLPD------EFVELSYSCVIERSFLYH---GRMY-VSAWHICFHSNAFSRQ---MKVIIPI 219 (315)
Q Consensus 153 ~~~~~~~~k~~~f~~~F~lp~~------E~l~~~~~c~l~~~~~~~---G~ly-is~~~~cF~s~~~g~~---~~~~i~~ 219 (315)
+.+.+...++++|.+++-+|.. ....++.+|.|...+.+. ..+. ....+.+|+.+.++.. -.+.||+
T Consensus 28 L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l 107 (124)
T cd08385 28 LPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107 (124)
T ss_pred CCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEec
Confidence 3333444566777777644432 345566777776633222 1111 1233344555444322 1456666
Q ss_pred Ccee
Q 021238 220 GDID 223 (315)
Q Consensus 220 ~~i~ 223 (315)
.++.
T Consensus 108 ~~~~ 111 (124)
T cd08385 108 LTVD 111 (124)
T ss_pred Cccc
Confidence 6653
No 178
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=51.71 E-value=1.4e+02 Score=24.86 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=53.3
Q ss_pred EEEEEEEeecCCCCCCCCCCceEEEEEE----------CCE-EEEeecccC-----CCCCeecceEEEEec--CC--CcE
Q 021238 16 IKLELLAAKNLIGANLNGTSDPYAIITC----------GSE-KRFSSMVPG-----SRYPMWGEEFNFSVD--EL--PVQ 75 (315)
Q Consensus 16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l----------~~~-~~rT~vi~~-----tlnP~w~e~f~f~v~--~~--~~~ 75 (315)
+.=.|.+|.+.. ..+-||+..+ +.. ...|.+... +-.=.|+..|.+.+. .+ =-.
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 334577787553 3467888776 122 345555542 334678888888764 22 136
Q ss_pred EEEEEEecCCCCCCceeEEEEEEcc
Q 021238 76 IIVTIYDWDIIWKSTVLGSVIVTVE 100 (315)
Q Consensus 76 L~~~V~d~d~~~~dd~iG~~~i~l~ 100 (315)
|.|+||..|..+++.+.|-..+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999999998887763
No 179
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=51.06 E-value=55 Score=27.13 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=36.2
Q ss_pred ceEEEEEEeecCcccccccc-ccccccccccccccccCCCcccccCCCCceeeccCCc--------ccceeecceeeeee
Q 021238 117 GQVCLHIKTIKLPVNASRVM-NGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--------DEFVELSYSCVIER 187 (315)
Q Consensus 117 G~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~k~~~~~~~~k~~~f~~~F~lp~--------~E~l~~~~~c~l~~ 187 (315)
|++.+.+.+.+......... ..-.+.......++..+.+.+....+++|.++.-++. .+.+.++.+|.|..
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 66777777666442211100 0001111122234455555555677888888764432 23455666777765
Q ss_pred ec
Q 021238 188 SF 189 (315)
Q Consensus 188 ~~ 189 (315)
.+
T Consensus 82 ~f 83 (162)
T cd04020 82 TF 83 (162)
T ss_pred EE
Confidence 43
No 180
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=50.50 E-value=46 Score=25.80 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=20.3
Q ss_pred cCCCcccccCCCCceeeccCCcc------cceeecceeeeee
Q 021238 152 KQGPTVVHQKPGPLQTIFNLLPD------EFVELSYSCVIER 187 (315)
Q Consensus 152 k~~~~~~~~k~~~f~~~F~lp~~------E~l~~~~~c~l~~ 187 (315)
.+.+.+....+++|.++.-+|.+ +.+.++.+|.|..
T Consensus 27 ~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne 68 (124)
T cd08387 27 NLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDE 68 (124)
T ss_pred CCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCccc
Confidence 33344445567777777654432 3445666677665
No 181
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=50.12 E-value=1.1e+02 Score=23.01 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=45.0
Q ss_pred ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc-ccccC--cEEEEEecCCCCCCCCCCCCCCCceEEEEeeec
Q 021238 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFINP--AITIILRMGAGGHGVPPLGSPDGRVRYKFASFW 268 (315)
Q Consensus 192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~-~~~~~--~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~ 268 (315)
+|-+|...+.+.|-.. .--++|+++||..|+=++. ..-.- .+.|++++ .+...+.|++.-
T Consensus 12 ~g~L~pl~~~l~f~~~----kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~-------------~~~~~~~fs~I~ 74 (95)
T PF08512_consen 12 EGFLYPLEKCLLFGLE----KPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKD-------------YEGPPHEFSSID 74 (95)
T ss_dssp EEEEEEESSEEEEECS----SS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT--------------TS-EEEEEEEE
T ss_pred CEEEEEccceEEEecC----CCeEEEEhhHeeEEEEEecccCcceEEEEEEEEec-------------CCCCcEEEeeEC
Confidence 4899999987766322 2358999999999988763 22222 68888853 135789999874
Q ss_pred chHHHHHHHHHHHH
Q 021238 269 NRNHALRQLQRTAK 282 (315)
Q Consensus 269 ~rd~~~~~l~~~~~ 282 (315)
|++ +..|.+-.+
T Consensus 75 -~~e-~~~l~~~l~ 86 (95)
T PF08512_consen 75 -REE-YDNLKDFLK 86 (95)
T ss_dssp -GGG-HHHHHHHHH
T ss_pred -HHH-HHHHHHHHH
Confidence 443 445555444
No 182
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=47.50 E-value=68 Score=24.77 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=32.9
Q ss_pred CcccccCCCCceeeccCCc------ccceeecceeeeeeecccc----eeEE-eecceeeeeecCCCce---eEEEEecC
Q 021238 155 PTVVHQKPGPLQTIFNLLP------DEFVELSYSCVIERSFLYH----GRMY-VSAWHICFHSNAFSRQ---MKVIIPIG 220 (315)
Q Consensus 155 ~~~~~~k~~~f~~~F~lp~------~E~l~~~~~c~l~~~~~~~----G~ly-is~~~~cF~s~~~g~~---~~~~i~~~ 220 (315)
+.+...+.++|.++.-+|. .+...++.+|.|...+.+. ..+. ....+.+++.+.++.. -...||+.
T Consensus 30 ~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~ 109 (125)
T cd08386 30 AKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLN 109 (125)
T ss_pred CccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecc
Confidence 3334445677777654432 2345566777776643321 1111 1123344554443322 24566666
Q ss_pred cee
Q 021238 221 DID 223 (315)
Q Consensus 221 ~i~ 223 (315)
++.
T Consensus 110 ~l~ 112 (125)
T cd08386 110 KVD 112 (125)
T ss_pred ccc
Confidence 654
No 183
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=46.56 E-value=38 Score=28.07 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.9
Q ss_pred eeEEeecceeeeeecCCCceeEEEEecCceeEEEee
Q 021238 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (315)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~ 228 (315)
.+|.+...++.|....-|....++|||.-|..|--.
T Consensus 67 ~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~aiya~ 102 (155)
T PF04386_consen 67 RDLSVDNDAISFTARFGGVPESIYVPFSAVLAIYAR 102 (155)
T ss_dssp EEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEEET
T ss_pred CCcEEECCEEEEEEEECCEEEEEEEhHHhhheeecc
Confidence 678999999999999999999999999999998643
No 184
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=40.59 E-value=1.2e+02 Score=21.00 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=36.2
Q ss_pred EEeecceeeeeecCCCceeEEEEecCceeEEEeeccccc--c--CcEEEEEecC
Q 021238 195 MYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--N--PAITIILRMG 244 (315)
Q Consensus 195 lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~--~--~~i~i~~~~g 244 (315)
..++...+...+-.++ .....||+..|.+|+-+.+-.. . -+|.+.+..|
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~ 58 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGG 58 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCC
Confidence 5677788888887765 7779999999999998875322 2 2677777543
No 185
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=39.54 E-value=37 Score=29.96 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=28.6
Q ss_pred ceeEEeecceeeeeecCCCceeEEEEecCceeEEEee
Q 021238 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (315)
Q Consensus 192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~ 228 (315)
.|++.+++..+.|-.+ .-|..||+++|.+|...
T Consensus 27 ~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 27 KGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred EEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 4999999999999973 45779999999999884
No 186
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=34.69 E-value=31 Score=28.05 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=32.9
Q ss_pred eeEEeecceeeeeecCCCceeEEEEecCceeEEEee
Q 021238 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (315)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~ 228 (315)
+.+.+...++.|....-|....+.||+..|..|--.
T Consensus 59 ~~L~i~nd~I~F~ARFgG~~~~i~VP~~AV~aIyAr 94 (138)
T PRK11798 59 GNLQLGNDAISFNARFGGVPRQIYVPVAAVLAIYAR 94 (138)
T ss_pred cCeEEeccEEEEEEEECCEEEEEEEeHHHhhhhhhh
Confidence 788999999999999999999999999999998544
No 187
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=34.20 E-value=8.8 Score=38.87 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=51.0
Q ss_pred eeEEEEEEEEeecCCCCC----CCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCCC
Q 021238 13 AYLIKLELLAAKNLIGAN----LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDII 86 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d----~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~~ 86 (315)
.|....++|.|.++.+.- ..-+.+|+++..++.+..||+....+.+|.|||. .++..+ ...-|...|.+++.+
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~ 357 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCEL 357 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccccc
Confidence 344445667777664421 1234689999999999999999999999999997 555432 233455566665554
Q ss_pred CCCc
Q 021238 87 WKST 90 (315)
Q Consensus 87 ~~dd 90 (315)
.-++
T Consensus 358 ~lnd 361 (975)
T KOG2419|consen 358 DLND 361 (975)
T ss_pred cccc
Confidence 4333
No 188
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=33.18 E-value=4.4e+02 Score=25.13 Aligned_cols=109 Identities=11% Similarity=0.238 Sum_probs=69.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeec--ceEEEEecCCCcEEEEEEEecCCCCCCc
Q 021238 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG--EEFNFSVDELPVQIIVTIYDWDIIWKST 90 (315)
Q Consensus 13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~--e~f~f~v~~~~~~L~~~V~d~d~~~~dd 90 (315)
.-.|.|.|-+-.++ +-....|+.+..+....+|..+.-+..-.-+ +...+.+..-+..|++.+|-.. +.+..
T Consensus 57 kF~LLVeI~EI~~i-----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKk-Lvkk~ 130 (508)
T PTZ00447 57 TFYLLVKINEIFNI-----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTK-LTKKV 130 (508)
T ss_pred eeeEEEEehhhhcc-----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecc-cccee
Confidence 34566666654443 3346788999999998888666544333222 3333344445678999999765 44677
Q ss_pred eeEEEEEEcccC----CCcccEEEEccCCCceE--EEEEEeecC
Q 021238 91 VLGSVIVTVESE----GQTGAVWYTLDSPSGQV--CLHIKTIKL 128 (315)
Q Consensus 91 ~iG~~~i~l~~l----~~~~~~w~~L~~~~G~i--~~~l~~~~~ 128 (315)
-||.+.+.+..- .-+...||-+.. .|+. ++.+++.+.
T Consensus 131 hIgdI~InIn~dIIdk~FPKnkWy~c~k-DGq~~cRIqLSFhKL 173 (508)
T PTZ00447 131 HIGQIKIDINASVISKSFPKNEWFVCFK-DGQEICKVQMSFYKI 173 (508)
T ss_pred EEEEEEecccHHHHhccCCccceEEEec-CCceeeeEEEEehhh
Confidence 899999999862 446788999964 4443 455554444
No 189
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=31.15 E-value=96 Score=26.44 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=30.5
Q ss_pred eeecCCCc--eeEEEEecCceeEEEeeccccccC--cEEEEEe
Q 021238 204 FHSNAFSR--QMKVIIPIGDIDEIQRSQHAFINP--AITIILR 242 (315)
Q Consensus 204 F~s~~~g~--~~~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~ 242 (315)
|++-.+|+ ...+.+|++||.+|+-+-.-.++| .+.+.|+
T Consensus 102 fRwGFPGKnR~I~l~~~~~dI~sIrv~i~eg~nprr~lyl~~k 144 (180)
T PF02392_consen 102 FRWGFPGKNRRIELRYPLKDIQSIRVEIKEGFNPRRVLYLRTK 144 (180)
T ss_pred EecCCCCCCeEEEEEEehHHeEEEEEEEccCCCCcceEEEEec
Confidence 78888887 445889999999998877667777 5666664
No 190
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=29.62 E-value=96 Score=26.51 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=31.8
Q ss_pred eee-eeecCCCcee--EEEEecCceeEEEeeccccccC--cEEEEEe
Q 021238 201 HIC-FHSNAFSRQM--KVIIPIGDIDEIQRSQHAFINP--AITIILR 242 (315)
Q Consensus 201 ~~c-F~s~~~g~~~--~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~ 242 (315)
.+| |++-.+|+.. .+.+|++||.+|+-+-.-.++| .|...++
T Consensus 101 ~v~ifRwGFPGKnR~I~l~~pl~dI~sIrieikeGlnprr~iyL~~k 147 (184)
T CHL00036 101 IVCIFRWGFPGKNRRIFLRFLIKDIQSIRIEVKEGLNPRRVLYLEIK 147 (184)
T ss_pred EEEEEecCCCCCceEEEEEeEhHHeEEEEEEEecCcCcccEEEEEEc
Confidence 344 8888888744 5889999999998887777788 4666653
No 191
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=29.15 E-value=98 Score=26.51 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=30.8
Q ss_pred eeeecCCCcee--EEEEecCceeEEEeeccccccC--cEEEEEe
Q 021238 203 CFHSNAFSRQM--KVIIPIGDIDEIQRSQHAFINP--AITIILR 242 (315)
Q Consensus 203 cF~s~~~g~~~--~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~ 242 (315)
-|++-.+|++. .+.+|++||.+|+-+-.-.++| .|...++
T Consensus 108 ifRwGFPGKNRrI~l~~pl~dIqsIrveikeGlnprr~iyL~~k 151 (188)
T PRK02542 108 IFRWGFPGKNRRIEVEYPLEDIQAVKVEIREGLNPRRRLYLRLK 151 (188)
T ss_pred EEecCCCCCceEEEEEeEhHHeEEEEEEEecCcCCccEEEEEEc
Confidence 38888888744 5889999999998887667777 4666653
No 192
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=28.62 E-value=66 Score=21.45 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=11.0
Q ss_pred CceEEEEeeecchHH
Q 021238 258 GRVRYKFASFWNRNH 272 (315)
Q Consensus 258 ~~~~~~F~sf~~rd~ 272 (315)
+++.|.|+||+-..+
T Consensus 31 enktyefssfvlcge 45 (66)
T PF13082_consen 31 ENKTYEFSSFVLCGE 45 (66)
T ss_pred eCceEEEEEEEEEcc
Confidence 346899999986544
No 193
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=28.61 E-value=1.4e+02 Score=23.96 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=28.7
Q ss_pred eeEEeecceeeeeecCCCceeEEEEecCceeE--EEeecc-ccccCcEEEEEe
Q 021238 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--IQRSQH-AFINPAITIILR 242 (315)
Q Consensus 193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~--i~k~~~-~~~~~~i~i~~~ 242 (315)
|.|||+...+-|.++.. ....+-||+..|.- |.+... ..-.|.|.+.+-
T Consensus 1 g~L~Vt~~~l~w~~~~~-~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld 52 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNED-SSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLD 52 (135)
T ss_dssp EEEEEETTEEEEEET---TTEEEEESS---SEEE--SS-S-S--S--EEEEEE
T ss_pred CEEEEecCEEEEECCCc-CCcceeecCCeEEEEEeecCCCCCCCCceEEEEEe
Confidence 78999999999988311 25789999999875 766554 444567877764
No 194
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=28.31 E-value=1.2e+02 Score=24.33 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=14.4
Q ss_pred ccCCCcccccCCCCceeeccCCcc
Q 021238 151 DKQGPTVVHQKPGPLQTIFNLLPD 174 (315)
Q Consensus 151 ~k~~~~~~~~k~~~f~~~F~lp~~ 174 (315)
..+.+.+..+.+++|-++.-+|.+
T Consensus 25 ~nL~~~~~~g~~DpyVkv~l~~~~ 48 (136)
T cd08406 25 RNLVWDNGKTTADPFVKVYLLQDG 48 (136)
T ss_pred eCCCCccCCCCCCeEEEEEEEeCC
Confidence 334344445667888887766644
No 195
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=28.00 E-value=4.6e+02 Score=25.58 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=55.6
Q ss_pred CCceEEEEEECCEEEEeecccC--C--CCC-e---ecceEEEEec------CCC------cEEEEEEEecCC-----C-C
Q 021238 34 TSDPYAIITCGSEKRFSSMVPG--S--RYP-M---WGEEFNFSVD------ELP------VQIIVTIYDWDI-----I-W 87 (315)
Q Consensus 34 ~sDPyv~v~l~~~~~rT~vi~~--t--lnP-~---w~e~f~f~v~------~~~------~~L~~~V~d~d~-----~-~ 87 (315)
.+..||+|++.+-..+|..+.- . .+| . -...|.++-. .+. ..|++.||--.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 3577999999766666654431 1 111 1 1233555321 112 459999998331 2 3
Q ss_pred CCceeEEEEEEcccC---CC---cccEEEEccCC--------CceEEEEEEeecC
Q 021238 88 KSTVLGSVIVTVESE---GQ---TGAVWYTLDSP--------SGQVCLHIKTIKL 128 (315)
Q Consensus 88 ~dd~iG~~~i~l~~l---~~---~~~~w~~L~~~--------~G~i~~~l~~~~~ 128 (315)
...+||.+.++|+-. +. -...|+.+.++ ..++|+.+.+++.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 567999999999853 11 13569998643 2456777765544
No 196
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=26.64 E-value=2.5e+02 Score=30.08 Aligned_cols=66 Identities=26% Similarity=0.523 Sum_probs=41.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEE----CCEE----EEeecccCCCCCeecceEEEEec--C--CCcEEEEEEEe
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITC----GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYD 82 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l----~~~~----~rT~vi~~tlnP~w~e~f~f~v~--~--~~~~L~~~V~d 82 (315)
.++|+++.+.++. .....|-+|.|.. +... ..|.-+..+.+|.||+...|++. + ....|.+.||-
T Consensus 344 ~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 4567777766543 2234456666554 3222 24444555788999999988874 3 34568888887
Q ss_pred c
Q 021238 83 W 83 (315)
Q Consensus 83 ~ 83 (315)
.
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 5
No 197
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=26.42 E-value=3.6e+02 Score=22.03 Aligned_cols=84 Identities=10% Similarity=0.085 Sum_probs=57.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEe-c----C--------CCcEEEEEEE
Q 021238 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-D----E--------LPVQIIVTIY 81 (315)
Q Consensus 15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v-~----~--------~~~~L~~~V~ 81 (315)
.|.|.-+.|-+.- ...+.|-|..|++-+...+|+.....--=.++|.|.|+- . + ....+.++++
T Consensus 3 eL~i~aVTCPGv~---L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 3 ELEIHAVTCPGVW---LCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEEecCCeE---eCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 3566666665443 234678999999988888998776655556689998862 1 1 2456889999
Q ss_pred ecCCCCCCceeEEEEEEcccC
Q 021238 82 DWDIIWKSTVLGSVIVTVESE 102 (315)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l 102 (315)
.+.... ...++...-...+.
T Consensus 80 Ql~~~~-g~iLA~ye~n~rDf 99 (140)
T PF14909_consen 80 QLVPPA-GEILAYYEENTRDF 99 (140)
T ss_pred EEeCCC-CcEEEEEeccccce
Confidence 977654 56777777666663
No 198
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=26.32 E-value=40 Score=24.45 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.2
Q ss_pred CceeEEEEecCceeEE
Q 021238 210 SRQMKVIIPIGDIDEI 225 (315)
Q Consensus 210 g~~~~~~i~~~~i~~i 225 (315)
+++.-++|||++|..|
T Consensus 52 ~~~~~~~Ipw~~I~kI 67 (76)
T TIGR02888 52 SKGEEIEIPWDAIKKI 67 (76)
T ss_pred cCCcEEEEEhhhccEE
Confidence 4456699999999988
No 199
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=26.12 E-value=1.6e+02 Score=22.63 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=46.6
Q ss_pred cccccCCCcccccCCCCceeeccCC----------cccceeecceeeeeeeccc--ceeEEeecceeeeeecC----CCc
Q 021238 148 ASLDKQGPTVVHQKPGPLQTIFNLL----------PDEFVELSYSCVIERSFLY--HGRMYVSAWHICFHSNA----FSR 211 (315)
Q Consensus 148 l~~~k~~~~~~~~k~~~f~~~F~lp----------~~E~l~~~~~c~l~~~~~~--~G~lyis~~~~cF~s~~----~g~ 211 (315)
+++..+...+...++++|.++.-.+ ..+.+.++.+|.|...+.+ .....-...+.+|+.+. .+.
T Consensus 7 i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~ 86 (120)
T cd04048 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSD 86 (120)
T ss_pred EEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCC
Confidence 3344444555566788888877322 2366788899999874433 33333345567777765 443
Q ss_pred e---eEEEEecCceeE
Q 021238 212 Q---MKVIIPIGDIDE 224 (315)
Q Consensus 212 ~---~~~~i~~~~i~~ 224 (315)
. -...+|+.++..
T Consensus 87 ~d~iG~~~i~l~~l~~ 102 (120)
T cd04048 87 HDFLGEAECTLGEIVS 102 (120)
T ss_pred CcEEEEEEEEHHHHhc
Confidence 2 246777777753
No 200
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=24.45 E-value=63 Score=28.96 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.4
Q ss_pred ceEEEEeeecchHHHHHHHHHH
Q 021238 259 RVRYKFASFWNRNHALRQLQRT 280 (315)
Q Consensus 259 ~~~~~F~sf~~rd~~~~~l~~~ 280 (315)
.+-|-|.+|.+||+|-+.|..|
T Consensus 230 ~kGFAFVtF~sRddA~rAI~~L 251 (270)
T KOG0122|consen 230 SKGFAFVTFESRDDAARAIADL 251 (270)
T ss_pred ccceEEEEEecHHHHHHHHHHc
Confidence 3568999999999999999876
No 201
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=22.08 E-value=1.4e+02 Score=21.48 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=21.0
Q ss_pred CcEEEEEEEecCCCCCCceeEEEEEE
Q 021238 73 PVQIIVTIYDWDIIWKSTVLGSVIVT 98 (315)
Q Consensus 73 ~~~L~~~V~d~d~~~~dd~iG~~~i~ 98 (315)
....+|++|+.|....|++++.+...
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 44567999999987889999987763
No 202
>PHA02150 hypothetical protein
Probab=20.87 E-value=33 Score=23.98 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=34.6
Q ss_pred ceeeccCCcccceeecceeeeee-ecccceeEEeecceeeeeecCCCc
Q 021238 165 LQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSR 211 (315)
Q Consensus 165 f~~~F~lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g~ 211 (315)
|...|+..++-.-..+.+|.... .+-+.|.+|.|..+--|.+...|.
T Consensus 23 fa~~f~~wd~if~~ed~~~~~~sd~~ei~g~~~mssqwypf~~~dlg~ 70 (77)
T PHA02150 23 FAKHFKKWDDVFATEDLSCEGMTDWAEINGQYIMSSQWYPFVSDDLGS 70 (77)
T ss_pred HHHHhhhHhHhhhhhhcccccccceeEECcEEEEEeceecceeccccc
Confidence 55555555554556677787766 566689999999999999988883
Done!