Query 021239
Match_columns 315
No_of_seqs 362 out of 3108
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00983 recA RecA is a bacter 100.0 1E-43 2.2E-48 327.2 22.5 238 66-307 2-239 (325)
2 PRK09354 recA recombinase A; P 100.0 1.7E-43 3.8E-48 327.9 23.3 240 64-307 5-244 (349)
3 PF00154 RecA: recA bacterial 100.0 1.3E-42 2.8E-47 318.8 22.0 238 68-308 1-238 (322)
4 TIGR02012 tigrfam_recA protein 100.0 1E-42 2.2E-47 320.5 19.6 239 66-308 2-240 (321)
5 PRK09519 recA DNA recombinatio 100.0 1.1E-38 2.4E-43 320.2 24.4 239 65-307 6-244 (790)
6 COG0468 RecA RecA/RadA recombi 100.0 7.1E-36 1.5E-40 269.6 20.4 222 67-296 8-232 (279)
7 TIGR02238 recomb_DMC1 meiotic 100.0 6.4E-34 1.4E-38 263.0 21.8 224 61-293 42-282 (313)
8 PLN03187 meiotic recombination 100.0 8.5E-34 1.8E-38 264.1 22.4 224 60-293 71-311 (344)
9 PF08423 Rad51: Rad51; InterP 100.0 7.9E-33 1.7E-37 249.6 15.9 192 97-293 16-224 (256)
10 PLN03186 DNA repair protein RA 100.0 4.8E-32 1E-36 252.6 20.6 193 96-293 100-309 (342)
11 PTZ00035 Rad51 protein; Provis 100.0 1.2E-31 2.6E-36 250.4 21.2 194 96-294 95-305 (337)
12 TIGR02239 recomb_RAD51 DNA rep 100.0 2.4E-30 5.2E-35 239.9 20.6 193 96-293 73-283 (316)
13 cd01393 recA_like RecA is a b 100.0 7.2E-30 1.6E-34 226.3 18.5 186 101-294 1-203 (226)
14 TIGR02236 recomb_radA DNA repa 100.0 7.4E-29 1.6E-33 230.3 19.1 190 96-293 72-280 (310)
15 PRK09361 radB DNA repair and r 100.0 1.7E-28 3.6E-33 217.7 18.8 180 99-291 3-190 (225)
16 PRK04301 radA DNA repair and r 100.0 1.4E-28 2.9E-33 229.1 19.0 190 96-293 79-286 (317)
17 cd01123 Rad51_DMC1_radA Rad51_ 100.0 1.6E-28 3.6E-33 218.9 18.3 188 101-293 1-206 (235)
18 cd01394 radB RadB. The archaea 100.0 2.1E-28 4.5E-33 216.0 18.6 181 101-293 1-188 (218)
19 KOG1434 Meiotic recombination 100.0 2.9E-29 6.3E-34 218.1 6.8 193 96-293 92-302 (335)
20 COG1066 Sms Predicted ATP-depe 99.9 1.1E-26 2.4E-31 215.0 16.5 173 96-292 70-244 (456)
21 TIGR02237 recomb_radB DNA repa 99.9 3E-26 6.6E-31 200.9 17.5 171 108-292 1-179 (209)
22 cd01121 Sms Sms (bacterial rad 99.9 1.9E-25 4E-30 211.0 18.8 176 96-294 59-236 (372)
23 TIGR03878 thermo_KaiC_2 KaiC d 99.9 2.1E-25 4.5E-30 201.9 17.8 172 100-292 3-205 (259)
24 PRK11823 DNA repair protein Ra 99.9 4.8E-25 1E-29 213.4 18.8 173 96-291 57-231 (446)
25 TIGR03877 thermo_KaiC_1 KaiC d 99.9 5.3E-25 1.1E-29 196.9 17.6 169 99-293 1-196 (237)
26 TIGR00416 sms DNA repair prote 99.9 4.4E-25 9.6E-30 213.8 17.3 175 96-293 71-247 (454)
27 PRK04328 hypothetical protein; 99.9 3.1E-24 6.7E-29 193.3 17.3 168 99-292 3-197 (249)
28 TIGR02655 circ_KaiC circadian 99.9 5.8E-25 1.3E-29 215.4 13.2 173 98-293 242-426 (484)
29 KOG1564 DNA repair protein RHP 99.9 9.6E-24 2.1E-28 186.1 14.4 192 97-292 80-310 (351)
30 PF06745 KaiC: KaiC; InterPro 99.9 3.1E-23 6.6E-28 184.1 14.3 167 101-292 1-186 (226)
31 TIGR03600 phage_DnaB phage rep 99.9 4.1E-22 8.8E-27 192.6 22.3 186 97-294 173-391 (421)
32 PRK06321 replicative DNA helic 99.9 2.2E-21 4.7E-26 188.7 23.1 190 97-294 205-426 (472)
33 PRK08760 replicative DNA helic 99.9 1.5E-21 3.3E-26 190.4 22.1 187 97-294 208-426 (476)
34 PRK09302 circadian clock prote 99.9 9E-23 2E-27 201.5 13.6 173 97-292 251-435 (509)
35 PRK09165 replicative DNA helic 99.9 1.5E-21 3.4E-26 191.4 22.0 188 97-293 196-429 (497)
36 PRK05748 replicative DNA helic 99.9 2.7E-21 5.9E-26 188.1 22.3 188 97-294 182-402 (448)
37 TIGR00665 DnaB replicative DNA 99.9 4.9E-21 1.1E-25 185.8 23.5 187 97-294 174-392 (434)
38 PRK05595 replicative DNA helic 99.9 4.3E-21 9.3E-26 186.4 22.8 187 97-294 180-398 (444)
39 PRK08006 replicative DNA helic 99.9 5.7E-21 1.2E-25 185.9 23.4 187 97-294 203-423 (471)
40 PRK08506 replicative DNA helic 99.9 3.2E-21 6.8E-26 188.2 21.6 187 97-294 171-389 (472)
41 TIGR03881 KaiC_arch_4 KaiC dom 99.9 1.6E-21 3.4E-26 173.4 17.2 168 100-293 1-191 (229)
42 cd01122 GP4d_helicase GP4d_hel 99.9 1.6E-21 3.5E-26 177.5 17.4 188 97-294 9-231 (271)
43 PRK05636 replicative DNA helic 99.9 6.3E-21 1.4E-25 186.7 22.3 185 97-294 244-462 (505)
44 PF03796 DnaB_C: DnaB-like hel 99.9 1.5E-21 3.3E-26 176.8 16.7 183 100-295 1-218 (259)
45 PHA02542 41 41 helicase; Provi 99.9 1.8E-21 3.8E-26 189.2 17.3 189 97-294 168-389 (473)
46 PRK08840 replicative DNA helic 99.9 2.2E-20 4.7E-25 181.5 23.1 187 97-294 196-416 (464)
47 PRK05973 replicative DNA helic 99.9 1.9E-21 4.1E-26 172.5 14.2 167 69-262 24-198 (237)
48 PRK06749 replicative DNA helic 99.9 3.9E-20 8.4E-25 178.3 22.7 188 97-294 165-387 (428)
49 PRK06904 replicative DNA helic 99.9 6.3E-20 1.4E-24 178.7 22.8 187 97-294 200-421 (472)
50 PRK06067 flagellar accessory p 99.9 1.3E-20 2.7E-25 168.3 15.9 146 97-257 3-165 (234)
51 PRK07004 replicative DNA helic 99.9 2.5E-20 5.3E-25 181.3 18.1 187 97-294 192-411 (460)
52 cd00984 DnaB_C DnaB helicase C 99.8 3.7E-20 7.9E-25 165.7 15.8 177 107-294 2-210 (242)
53 PRK09302 circadian clock prote 99.8 3.3E-20 7.2E-25 183.3 16.4 150 96-258 8-178 (509)
54 TIGR03880 KaiC_arch_3 KaiC dom 99.8 6E-20 1.3E-24 162.8 16.3 164 104-290 1-177 (224)
55 TIGR02655 circ_KaiC circadian 99.8 3E-20 6.6E-25 182.2 15.1 148 99-259 1-169 (484)
56 KOG1433 DNA repair protein RAD 99.8 2.1E-20 4.5E-25 171.6 7.6 192 96-292 88-290 (326)
57 COG0305 DnaB Replicative DNA h 99.8 2.1E-18 4.6E-23 163.9 20.6 187 98-295 176-394 (435)
58 PRK07773 replicative DNA helic 99.8 1.9E-18 4.1E-23 180.3 19.5 155 97-262 196-382 (886)
59 COG0467 RAD55 RecA-superfamily 99.8 3.6E-18 7.9E-23 154.8 16.1 149 98-259 2-173 (260)
60 PRK08533 flagellar accessory p 99.7 7.7E-17 1.7E-21 143.5 15.1 169 98-292 3-186 (230)
61 PF13481 AAA_25: AAA domain; P 99.7 5.4E-18 1.2E-22 146.4 6.2 151 97-259 10-191 (193)
62 COG2874 FlaH Predicted ATPases 99.6 3.3E-15 7.2E-20 128.1 13.5 143 100-257 9-168 (235)
63 cd01124 KaiC KaiC is a circadi 99.6 5.1E-15 1.1E-19 127.0 14.5 148 122-293 1-166 (187)
64 cd01120 RecA-like_NTPases RecA 99.6 5.2E-14 1.1E-18 117.0 16.5 157 122-291 1-165 (165)
65 cd01125 repA Hexameric Replica 99.6 2.2E-14 4.7E-19 128.5 13.7 162 120-295 1-194 (239)
66 COG3598 RepA RecA-family ATPas 99.4 6.3E-12 1.4E-16 113.8 11.3 158 115-289 84-268 (402)
67 PRK04296 thymidine kinase; Pro 99.2 5.2E-10 1.1E-14 96.8 12.3 115 120-260 2-119 (190)
68 KOG2373 Predicted mitochondria 99.0 1.6E-09 3.5E-14 99.1 11.0 180 104-296 259-461 (514)
69 cd00544 CobU Adenosylcobinamid 99.0 2.4E-09 5.3E-14 90.8 8.6 119 122-254 1-123 (169)
70 PF13479 AAA_24: AAA domain 98.9 9.2E-09 2E-13 90.5 11.4 158 120-291 3-174 (213)
71 PF13401 AAA_22: AAA domain; P 98.8 5.1E-08 1.1E-12 78.4 10.0 114 118-256 2-125 (131)
72 COG1136 SalX ABC-type antimicr 98.8 5E-08 1.1E-12 85.9 10.1 70 116-185 27-102 (226)
73 COG1120 FepC ABC-type cobalami 98.7 8.4E-08 1.8E-12 86.1 9.7 125 116-258 24-200 (258)
74 PRK05800 cobU adenosylcobinami 98.7 4.5E-08 9.7E-13 83.1 7.3 119 121-256 2-125 (170)
75 COG1122 CbiO ABC-type cobalt t 98.7 1.2E-07 2.5E-12 84.6 10.2 161 116-299 26-222 (235)
76 smart00382 AAA ATPases associa 98.7 2.9E-07 6.4E-12 73.3 11.0 92 119-212 1-92 (148)
77 TIGR01618 phage_P_loop phage n 98.6 4.4E-07 9.6E-12 80.0 11.2 158 120-291 12-182 (220)
78 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 3.3E-07 7.3E-12 81.9 9.1 36 116-151 26-61 (254)
79 COG1125 OpuBA ABC-type proline 98.5 5.6E-07 1.2E-11 79.8 9.9 72 116-188 23-97 (309)
80 cd03238 ABC_UvrA The excision 98.5 9.9E-07 2.1E-11 75.3 11.3 122 117-259 18-151 (176)
81 cd03246 ABCC_Protease_Secretio 98.5 8.2E-07 1.8E-11 75.4 10.5 122 117-259 25-158 (173)
82 cd03229 ABC_Class3 This class 98.5 5E-07 1.1E-11 77.1 9.0 126 117-260 23-164 (178)
83 COG2884 FtsE Predicted ATPase 98.5 1.3E-06 2.8E-11 74.3 11.0 73 101-175 11-88 (223)
84 COG1131 CcmA ABC-type multidru 98.5 4.2E-07 9.2E-12 83.8 8.8 130 116-261 27-201 (293)
85 PRK08727 hypothetical protein; 98.5 9.9E-07 2.1E-11 78.7 10.8 131 76-256 5-135 (233)
86 cd03230 ABC_DR_subfamily_A Thi 98.5 6.6E-07 1.4E-11 76.0 8.9 124 117-260 23-158 (173)
87 PRK05642 DNA replication initi 98.5 1.9E-06 4.1E-11 76.9 12.2 135 76-257 5-140 (234)
88 cd03216 ABC_Carb_Monos_I This 98.5 5.6E-07 1.2E-11 75.8 8.1 118 117-260 23-145 (163)
89 COG3845 ABC-type uncharacteriz 98.5 5.9E-07 1.3E-11 86.2 8.9 136 104-260 16-203 (501)
90 PRK06893 DNA replication initi 98.5 1.4E-06 3.1E-11 77.4 10.9 75 76-157 2-76 (229)
91 COG3839 MalK ABC-type sugar tr 98.5 6.2E-07 1.3E-11 83.6 8.5 61 117-178 26-87 (338)
92 PRK13537 nodulation ABC transp 98.4 8.2E-07 1.8E-11 82.5 9.2 38 116-153 29-66 (306)
93 PRK08084 DNA replication initi 98.4 2.5E-06 5.4E-11 76.2 12.0 77 75-158 7-83 (235)
94 COG4555 NatA ABC-type Na+ tran 98.4 3.7E-06 8E-11 72.3 12.1 125 116-260 24-196 (245)
95 COG3842 PotA ABC-type spermidi 98.4 4.1E-07 8.9E-12 85.2 6.5 68 116-183 27-94 (352)
96 KOG2859 DNA repair protein, me 98.4 2.3E-06 5E-11 74.0 10.4 137 118-257 36-210 (293)
97 PF01695 IstB_IS21: IstB-like 98.4 1E-06 2.2E-11 75.4 8.2 77 117-210 44-120 (178)
98 cd03256 ABC_PhnC_transporter A 98.4 1.5E-06 3.3E-11 77.5 9.7 38 116-153 23-60 (241)
99 COG1126 GlnQ ABC-type polar am 98.4 2.3E-06 4.9E-11 74.3 10.0 63 116-179 24-90 (240)
100 cd03228 ABCC_MRP_Like The MRP 98.4 1.4E-06 3E-11 73.9 8.6 122 117-260 25-158 (171)
101 PRK06526 transposase; Provisio 98.4 1.6E-06 3.4E-11 78.4 9.4 40 117-156 95-134 (254)
102 cd03222 ABC_RNaseL_inhibitor T 98.4 1.5E-06 3.2E-11 74.3 8.7 113 117-260 22-135 (177)
103 cd03298 ABC_ThiQ_thiamine_tran 98.4 1.5E-06 3.2E-11 76.1 8.9 36 116-151 20-55 (211)
104 cd03259 ABC_Carb_Solutes_like 98.4 1.5E-06 3.1E-11 76.3 8.8 37 116-152 22-58 (213)
105 PRK08181 transposase; Validate 98.4 2.5E-06 5.4E-11 77.6 10.6 77 118-211 104-180 (269)
106 COG4152 ABC-type uncharacteriz 98.4 1.1E-06 2.4E-11 77.6 7.8 123 116-260 24-193 (300)
107 cd03301 ABC_MalK_N The N-termi 98.4 1.2E-06 2.6E-11 76.8 8.1 37 116-152 22-58 (213)
108 PF00004 AAA: ATPase family as 98.4 2.7E-06 5.8E-11 68.1 9.5 113 123-260 1-115 (132)
109 TIGR01277 thiQ thiamine ABC tr 98.4 1.7E-06 3.7E-11 75.9 9.0 36 117-152 21-56 (213)
110 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.4 2E-06 4.4E-11 75.6 9.3 38 116-153 26-63 (218)
111 cd03213 ABCG_EPDR ABCG transpo 98.4 1.7E-06 3.6E-11 75.0 8.7 123 116-258 31-172 (194)
112 COG4604 CeuD ABC-type enteroch 98.4 7.5E-07 1.6E-11 76.2 6.2 54 116-170 23-79 (252)
113 cd03115 SRP The signal recogni 98.4 5.6E-06 1.2E-10 70.1 11.7 88 122-210 2-94 (173)
114 cd00009 AAA The AAA+ (ATPases 98.4 3.5E-06 7.6E-11 67.7 10.0 79 119-211 18-97 (151)
115 TIGR02315 ABC_phnC phosphonate 98.4 2.5E-06 5.3E-11 76.3 9.9 37 117-153 25-61 (243)
116 PF05621 TniB: Bacterial TniB 98.4 8.9E-06 1.9E-10 74.4 13.6 132 104-254 45-187 (302)
117 TIGR01188 drrA daunorubicin re 98.4 2E-06 4.3E-11 79.7 9.5 38 116-153 15-52 (302)
118 PRK09183 transposase/IS protei 98.4 4.2E-06 9E-11 75.9 11.4 40 117-156 99-138 (259)
119 cd03214 ABC_Iron-Siderophores_ 98.4 3.3E-06 7.1E-11 72.2 10.0 126 116-260 21-161 (180)
120 PF00448 SRP54: SRP54-type pro 98.3 5.1E-06 1.1E-10 72.2 11.2 87 121-210 2-95 (196)
121 cd03261 ABC_Org_Solvent_Resist 98.3 2.7E-06 5.8E-11 75.8 9.6 37 117-153 23-59 (235)
122 cd03215 ABC_Carb_Monos_II This 98.3 2.4E-06 5.2E-11 73.1 9.0 125 116-260 22-167 (182)
123 cd03266 ABC_NatA_sodium_export 98.3 3.2E-06 6.9E-11 74.3 10.0 38 116-153 27-64 (218)
124 COG1222 RPT1 ATP-dependent 26S 98.3 9E-07 2E-11 81.9 6.5 123 115-259 180-302 (406)
125 cd03258 ABC_MetN_methionine_tr 98.3 3.4E-06 7.4E-11 75.0 10.2 38 116-153 27-64 (233)
126 cd03296 ABC_CysA_sulfate_impor 98.3 1.8E-06 3.9E-11 77.2 8.4 36 116-151 24-59 (239)
127 COG0410 LivF ABC-type branched 98.3 2.3E-06 5E-11 74.9 8.7 41 117-157 26-66 (237)
128 PRK10771 thiQ thiamine transpo 98.3 2.2E-06 4.8E-11 76.2 8.9 37 116-152 21-57 (232)
129 cd03265 ABC_DrrA DrrA is the A 98.3 3.8E-06 8.1E-11 74.1 10.2 37 116-152 22-58 (220)
130 TIGR03265 PhnT2 putative 2-ami 98.3 1.8E-06 3.9E-11 81.8 8.6 36 117-152 27-62 (353)
131 PRK08903 DnaA regulatory inact 98.3 5.4E-06 1.2E-10 73.4 11.1 77 75-157 3-79 (227)
132 PF00308 Bac_DnaA: Bacterial d 98.3 1.3E-05 2.9E-10 70.8 13.5 105 120-257 34-140 (219)
133 PRK11650 ugpC glycerol-3-phosp 98.3 1.7E-06 3.7E-11 82.0 8.3 40 116-156 26-65 (356)
134 PRK13536 nodulation factor exp 98.3 2.1E-06 4.6E-11 80.9 8.5 37 117-153 64-100 (340)
135 PRK12377 putative replication 98.3 6.4E-06 1.4E-10 74.1 11.0 75 121-211 102-176 (248)
136 cd03268 ABC_BcrA_bacitracin_re 98.3 4.5E-06 9.9E-11 72.8 9.8 36 117-152 23-58 (208)
137 cd03232 ABC_PDR_domain2 The pl 98.3 4E-06 8.6E-11 72.5 9.1 122 116-258 29-169 (192)
138 PRK11000 maltose/maltodextrin 98.3 2.7E-06 5.9E-11 81.0 8.7 36 117-152 26-61 (369)
139 TIGR02211 LolD_lipo_ex lipopro 98.3 3.8E-06 8.2E-11 74.0 9.1 38 116-153 27-64 (221)
140 COG1124 DppF ABC-type dipeptid 98.3 5.7E-06 1.2E-10 73.0 9.9 39 117-156 30-68 (252)
141 PRK09452 potA putrescine/sperm 98.3 3.8E-06 8.2E-11 80.1 9.6 36 116-151 36-71 (375)
142 PRK11432 fbpC ferric transport 98.3 2.9E-06 6.3E-11 80.3 8.6 36 116-151 28-63 (351)
143 PRK06835 DNA replication prote 98.3 7E-06 1.5E-10 76.8 11.1 77 120-211 183-259 (329)
144 cd03247 ABCC_cytochrome_bd The 98.3 3.5E-06 7.6E-11 71.8 8.4 123 116-260 24-160 (178)
145 TIGR00064 ftsY signal recognit 98.3 1.7E-05 3.8E-10 72.3 13.3 90 119-211 71-167 (272)
146 PRK10867 signal recognition pa 98.3 9.1E-06 2E-10 78.6 11.9 90 120-211 100-196 (433)
147 TIGR03258 PhnT 2-aminoethylpho 98.3 3.2E-06 6.9E-11 80.3 8.6 39 117-156 28-68 (362)
148 PF13173 AAA_14: AAA domain 98.3 6.1E-06 1.3E-10 66.5 9.2 100 120-260 2-102 (128)
149 COG4107 PhnK ABC-type phosphon 98.3 1.1E-05 2.4E-10 67.9 10.8 44 117-160 29-72 (258)
150 PRK13540 cytochrome c biogenes 98.3 7.7E-06 1.7E-10 71.0 10.3 40 117-157 24-63 (200)
151 PRK11629 lolD lipoprotein tran 98.3 4.7E-06 1E-10 74.1 9.2 36 116-151 31-66 (233)
152 PRK10584 putative ABC transpor 98.3 5E-06 1.1E-10 73.7 9.2 36 117-152 33-68 (228)
153 PTZ00454 26S protease regulato 98.3 4.8E-06 1E-10 79.9 9.7 124 115-260 174-297 (398)
154 PRK13635 cbiO cobalt transport 98.3 3.8E-06 8.3E-11 77.0 8.7 38 116-153 29-66 (279)
155 COG4608 AppF ABC-type oligopep 98.3 6.4E-06 1.4E-10 74.0 9.8 127 116-260 35-173 (268)
156 COG1135 AbcC ABC-type metal io 98.3 7E-06 1.5E-10 74.9 10.1 136 104-260 18-205 (339)
157 PRK10851 sulfate/thiosulfate t 98.3 3.7E-06 8E-11 79.6 8.8 36 117-152 25-60 (353)
158 PTZ00361 26 proteosome regulat 98.3 1.1E-05 2.4E-10 78.2 12.2 123 116-260 213-335 (438)
159 TIGR00960 3a0501s02 Type II (G 98.2 4.7E-06 1E-10 73.2 8.8 37 116-152 25-61 (216)
160 PRK11144 modC molybdate transp 98.2 4.1E-06 8.9E-11 79.3 9.0 36 117-152 21-56 (352)
161 COG1618 Predicted nucleotide k 98.2 5.2E-06 1.1E-10 68.8 8.3 34 122-155 7-40 (179)
162 cd03300 ABC_PotA_N PotA is an 98.2 5.4E-06 1.2E-10 73.7 9.2 36 117-152 23-58 (232)
163 COG1129 MglA ABC-type sugar tr 98.2 3.7E-06 8.1E-11 81.9 8.7 135 104-260 20-208 (500)
164 cd03293 ABC_NrtD_SsuB_transpor 98.2 3.3E-06 7.1E-11 74.4 7.7 36 116-151 26-61 (220)
165 PRK11247 ssuB aliphatic sulfon 98.2 4.5E-06 9.8E-11 75.6 8.7 36 116-151 34-69 (257)
166 cd00267 ABC_ATPase ABC (ATP-bi 98.2 7.6E-06 1.7E-10 68.2 9.4 118 117-260 22-143 (157)
167 TIGR03499 FlhF flagellar biosy 98.2 7.2E-06 1.6E-10 75.3 10.0 82 118-207 192-281 (282)
168 TIGR01288 nodI ATP-binding ABC 98.2 5E-06 1.1E-10 77.1 9.1 38 116-153 26-63 (303)
169 cd03292 ABC_FtsE_transporter F 98.2 7E-06 1.5E-10 71.9 9.6 36 117-152 24-59 (214)
170 PRK10416 signal recognition pa 98.2 2.7E-05 5.9E-10 72.6 13.9 91 118-211 112-209 (318)
171 PRK12724 flagellar biosynthesi 98.2 9.1E-06 2E-10 77.9 10.8 83 116-207 219-308 (432)
172 cd03237 ABC_RNaseL_inhibitor_d 98.2 6.9E-06 1.5E-10 73.9 9.6 32 115-146 20-51 (246)
173 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.4E-05 3E-10 70.5 11.3 74 77-157 2-75 (226)
174 PRK12726 flagellar biosynthesi 98.2 9.2E-06 2E-10 76.8 10.6 90 117-211 203-298 (407)
175 PRK11607 potG putrescine trans 98.2 3.9E-06 8.4E-11 80.1 8.3 39 117-156 42-80 (377)
176 cd03269 ABC_putative_ATPase Th 98.2 5E-06 1.1E-10 72.7 8.4 35 117-151 23-57 (210)
177 cd03231 ABC_CcmA_heme_exporter 98.2 7.6E-06 1.6E-10 71.2 9.5 36 117-152 23-58 (201)
178 TIGR03608 L_ocin_972_ABC putat 98.2 4.3E-06 9.3E-11 72.8 7.9 36 117-152 21-56 (206)
179 TIGR03864 PQQ_ABC_ATP ABC tran 98.2 7.4E-06 1.6E-10 73.0 9.5 37 116-152 23-59 (236)
180 cd03294 ABC_Pro_Gly_Bertaine T 98.2 5.9E-06 1.3E-10 75.3 9.0 37 116-152 46-82 (269)
181 PRK06921 hypothetical protein; 98.2 7.8E-06 1.7E-10 74.4 9.7 38 119-156 116-154 (266)
182 TIGR01184 ntrCD nitrate transp 98.2 8.1E-06 1.8E-10 72.6 9.6 36 117-152 8-43 (230)
183 TIGR03410 urea_trans_UrtE urea 98.2 7.7E-06 1.7E-10 72.5 9.5 38 116-153 22-59 (230)
184 PRK13650 cbiO cobalt transport 98.2 5.9E-06 1.3E-10 75.7 8.8 37 116-152 29-65 (279)
185 COG4586 ABC-type uncharacteriz 98.2 1.6E-05 3.4E-10 71.4 11.0 43 116-158 46-88 (325)
186 PRK10253 iron-enterobactin tra 98.2 9.7E-06 2.1E-10 73.6 10.0 37 116-152 29-65 (265)
187 TIGR02314 ABC_MetN D-methionin 98.2 5.9E-06 1.3E-10 77.9 8.8 40 116-156 27-66 (343)
188 TIGR02142 modC_ABC molybdenum 98.2 5.3E-06 1.1E-10 78.6 8.5 36 117-152 20-55 (354)
189 PRK10247 putative ABC transpor 98.2 1.3E-05 2.9E-10 70.9 10.6 37 116-152 29-65 (225)
190 PRK11264 putative amino-acid A 98.2 9.5E-06 2.1E-10 72.9 9.8 37 116-152 25-61 (250)
191 PF07088 GvpD: GvpD gas vesicl 98.2 1.7E-05 3.6E-10 74.5 11.4 134 118-260 8-160 (484)
192 PRK11153 metN DL-methionine tr 98.2 5.3E-06 1.1E-10 78.3 8.4 38 116-153 27-64 (343)
193 TIGR02673 FtsE cell division A 98.2 8.5E-06 1.8E-10 71.4 9.2 37 116-152 24-60 (214)
194 cd03225 ABC_cobalt_CbiO_domain 98.2 1E-05 2.3E-10 70.7 9.7 38 116-153 23-60 (211)
195 COG1127 Ttg2A ABC-type transpo 98.2 7.7E-06 1.7E-10 72.1 8.6 42 116-157 30-71 (263)
196 PRK09984 phosphonate/organopho 98.2 1.4E-05 3.1E-10 72.3 10.8 29 117-145 27-55 (262)
197 PRK10575 iron-hydroxamate tran 98.2 8.4E-06 1.8E-10 74.0 9.2 37 116-152 33-69 (265)
198 PRK11300 livG leucine/isoleuci 98.2 9.2E-06 2E-10 73.2 9.5 38 116-153 27-64 (255)
199 cd03219 ABC_Mj1267_LivG_branch 98.2 1.1E-05 2.4E-10 71.7 9.9 36 117-152 23-58 (236)
200 TIGR01166 cbiO cobalt transpor 98.2 1E-05 2.2E-10 69.7 9.2 37 116-152 14-50 (190)
201 TIGR00959 ffh signal recogniti 98.2 2.2E-05 4.7E-10 76.0 12.4 90 120-211 99-195 (428)
202 cd03262 ABC_HisP_GlnQ_permease 98.2 1.1E-05 2.3E-10 70.7 9.3 38 116-153 22-59 (213)
203 cd03299 ABC_ModC_like Archeal 98.2 8E-06 1.7E-10 72.8 8.7 35 117-151 22-56 (235)
204 PRK13548 hmuV hemin importer A 98.2 1E-05 2.3E-10 73.2 9.5 38 116-153 24-61 (258)
205 cd03283 ABC_MutS-like MutS-lik 98.2 1.6E-05 3.4E-10 69.3 10.2 28 117-144 22-49 (199)
206 COG3638 ABC-type phosphate/pho 98.2 1.4E-05 3.1E-10 70.3 9.8 52 103-157 15-66 (258)
207 PRK11248 tauB taurine transpor 98.2 8.1E-06 1.8E-10 73.8 8.7 37 116-152 23-59 (255)
208 COG1118 CysA ABC-type sulfate/ 98.2 3.5E-06 7.5E-11 76.7 6.0 57 116-173 24-84 (345)
209 PRK11831 putative ABC transpor 98.2 1E-05 2.3E-10 73.6 9.3 37 116-152 29-65 (269)
210 COG4181 Predicted ABC-type tra 98.2 2.5E-06 5.5E-11 71.5 4.7 64 117-180 33-102 (228)
211 TIGR00968 3a0106s01 sulfate AB 98.2 9.1E-06 2E-10 72.6 8.7 35 117-151 23-57 (237)
212 cd03233 ABC_PDR_domain1 The pl 98.2 6.4E-06 1.4E-10 71.8 7.5 30 116-145 29-58 (202)
213 cd03297 ABC_ModC_molybdenum_tr 98.2 1E-05 2.2E-10 70.9 8.9 36 117-153 21-56 (214)
214 cd03263 ABC_subfamily_A The AB 98.2 1.2E-05 2.6E-10 70.7 9.4 38 116-153 24-61 (220)
215 COG4619 ABC-type uncharacteriz 98.2 1.8E-05 3.9E-10 66.3 9.7 125 116-259 25-196 (223)
216 PRK09536 btuD corrinoid ABC tr 98.2 8.3E-06 1.8E-10 78.4 8.9 38 116-153 25-62 (402)
217 PRK03992 proteasome-activating 98.2 1.1E-05 2.4E-10 77.4 9.8 123 116-260 161-283 (389)
218 PRK13543 cytochrome c biogenes 98.1 1.5E-05 3.3E-10 70.0 9.8 35 116-150 33-67 (214)
219 PF09807 DUF2348: Uncharacteri 98.1 5E-05 1.1E-09 68.4 13.3 169 105-294 2-213 (249)
220 TIGR03005 ectoine_ehuA ectoine 98.1 1.1E-05 2.4E-10 72.6 9.1 37 116-152 22-58 (252)
221 cd03226 ABC_cobalt_CbiO_domain 98.1 6.9E-06 1.5E-10 71.6 7.4 36 116-151 22-57 (205)
222 COG0411 LivG ABC-type branched 98.1 6.3E-06 1.4E-10 72.8 7.1 50 104-155 16-65 (250)
223 PRK13652 cbiO cobalt transport 98.1 2E-05 4.3E-10 72.1 10.7 36 117-152 27-62 (277)
224 PRK08116 hypothetical protein; 98.1 2.6E-05 5.5E-10 71.1 11.3 38 120-157 114-151 (268)
225 TIGR03522 GldA_ABC_ATP gliding 98.1 1.3E-05 2.8E-10 74.3 9.5 38 116-153 24-61 (301)
226 COG4618 ArpD ABC-type protease 98.1 2.2E-05 4.7E-10 75.9 11.1 123 117-257 359-532 (580)
227 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 2E-05 4.4E-10 64.9 9.7 107 116-260 22-130 (144)
228 cd03218 ABC_YhbG The ABC trans 98.1 1.5E-05 3.2E-10 70.7 9.6 36 117-152 23-58 (232)
229 COG3840 ThiQ ABC-type thiamine 98.1 1.9E-05 4.1E-10 67.0 9.4 44 116-159 21-64 (231)
230 TIGR02324 CP_lyasePhnL phospho 98.1 1.5E-05 3.2E-10 70.4 9.5 37 117-153 31-67 (224)
231 cd03223 ABCD_peroxisomal_ALDP 98.1 3.1E-05 6.8E-10 65.3 11.0 36 116-151 23-58 (166)
232 PRK14250 phosphate ABC transpo 98.1 1.1E-05 2.3E-10 72.3 8.5 37 117-153 26-62 (241)
233 TIGR01186 proV glycine betaine 98.1 8.1E-06 1.8E-10 77.5 8.1 41 116-157 15-55 (363)
234 PRK14974 cell division protein 98.1 4E-05 8.7E-10 71.9 12.5 91 119-211 139-235 (336)
235 TIGR01189 ccmA heme ABC export 98.1 1.4E-05 3.1E-10 69.2 9.0 35 117-151 23-57 (198)
236 PRK13634 cbiO cobalt transport 98.1 1.1E-05 2.4E-10 74.4 8.6 37 116-152 29-65 (290)
237 PRK13648 cbiO cobalt transport 98.1 1.3E-05 2.8E-10 72.9 9.0 40 116-156 31-70 (269)
238 cd03235 ABC_Metallic_Cations A 98.1 1.4E-05 3E-10 70.0 8.9 36 116-151 21-56 (213)
239 PRK13640 cbiO cobalt transport 98.1 1.4E-05 3E-10 73.4 9.2 32 116-147 29-60 (282)
240 COG1134 TagH ABC-type polysacc 98.1 1.3E-05 2.8E-10 70.9 8.5 142 117-294 50-225 (249)
241 cd03267 ABC_NatA_like Similar 98.1 1.1E-05 2.5E-10 71.9 8.4 35 117-151 44-78 (236)
242 PRK10895 lipopolysaccharide AB 98.1 1.7E-05 3.6E-10 70.9 9.5 37 117-153 26-62 (241)
243 cd03257 ABC_NikE_OppD_transpor 98.1 1.2E-05 2.7E-10 71.0 8.5 37 116-152 27-63 (228)
244 PRK10908 cell division protein 98.1 1.5E-05 3.2E-10 70.3 9.0 37 116-152 24-60 (222)
245 PRK05703 flhF flagellar biosyn 98.1 1.1E-05 2.5E-10 78.0 8.9 84 118-209 219-310 (424)
246 PRK13636 cbiO cobalt transport 98.1 1.3E-05 2.8E-10 73.6 8.9 38 116-153 28-65 (283)
247 PRK13647 cbiO cobalt transport 98.1 1.3E-05 2.8E-10 73.3 8.8 37 116-152 27-63 (274)
248 PRK13538 cytochrome c biogenes 98.1 1.9E-05 4.1E-10 68.8 9.3 38 116-153 23-60 (204)
249 COG1116 TauB ABC-type nitrate/ 98.1 4.5E-05 9.7E-10 67.8 11.6 37 117-153 26-62 (248)
250 PRK13646 cbiO cobalt transport 98.1 1.5E-05 3.2E-10 73.3 9.0 38 116-153 29-66 (286)
251 PRK09544 znuC high-affinity zi 98.1 2.5E-05 5.5E-10 70.4 10.4 30 117-146 27-56 (251)
252 TIGR03873 F420-0_ABC_ATP propo 98.1 2.5E-05 5.3E-10 70.5 10.3 36 117-152 24-59 (256)
253 PRK00771 signal recognition pa 98.1 7.8E-05 1.7E-09 72.4 14.2 99 106-211 76-188 (437)
254 PRK07952 DNA replication prote 98.1 3E-05 6.5E-10 69.6 10.6 36 121-156 100-135 (244)
255 KOG0736 Peroxisome assembly fa 98.1 1.3E-05 2.9E-10 80.5 9.0 123 111-257 697-819 (953)
256 PRK09493 glnQ glutamine ABC tr 98.1 2.2E-05 4.7E-10 70.2 9.7 37 116-152 23-59 (240)
257 PRK10619 histidine/lysine/argi 98.1 1.7E-05 3.7E-10 71.6 8.9 40 116-156 27-66 (257)
258 PRK11889 flhF flagellar biosyn 98.1 2.1E-05 4.6E-10 74.7 9.7 87 120-211 241-333 (436)
259 PRK13768 GTPase; Provisional 98.1 3.8E-05 8.2E-10 69.4 11.1 41 121-161 3-43 (253)
260 cd03253 ABCC_ATM1_transporter 98.1 1.9E-05 4.2E-10 70.2 9.1 38 116-153 23-60 (236)
261 COG1484 DnaC DNA replication p 98.1 2.9E-05 6.3E-10 70.2 10.2 40 117-156 102-141 (254)
262 PRK13637 cbiO cobalt transport 98.1 1.9E-05 4.2E-10 72.6 9.2 36 116-151 29-64 (287)
263 PRK10070 glycine betaine trans 98.1 1.3E-05 2.9E-10 77.0 8.5 36 117-152 51-86 (400)
264 PRK08939 primosomal protein Dn 98.1 4.4E-05 9.6E-10 70.8 11.6 76 119-211 155-230 (306)
265 PRK15112 antimicrobial peptide 98.1 1.7E-05 3.6E-10 72.2 8.6 38 116-153 35-72 (267)
266 COG1123 ATPase components of v 98.1 2.2E-05 4.9E-10 77.1 9.8 41 117-157 314-354 (539)
267 TIGR03740 galliderm_ABC gallid 98.1 2E-05 4.4E-10 69.5 8.8 35 117-151 23-57 (223)
268 cd03234 ABCG_White The White s 98.1 1.9E-05 4.2E-10 69.8 8.7 37 116-152 29-68 (226)
269 KOG0733 Nuclear AAA ATPase (VC 98.0 1.2E-05 2.7E-10 78.9 7.8 120 115-259 218-339 (802)
270 PRK11308 dppF dipeptide transp 98.0 1.8E-05 4E-10 74.2 8.8 37 117-153 38-74 (327)
271 cd01132 F1_ATPase_alpha F1 ATP 98.0 4.1E-05 9E-10 69.5 10.7 114 95-211 47-174 (274)
272 TIGR01425 SRP54_euk signal rec 98.0 5.4E-05 1.2E-09 73.0 12.0 88 120-210 100-194 (429)
273 PRK13642 cbiO cobalt transport 98.0 2.6E-05 5.6E-10 71.4 9.5 36 117-152 30-65 (277)
274 PRK11124 artP arginine transpo 98.0 2.8E-05 6.1E-10 69.5 9.5 36 117-152 25-60 (242)
275 PRK13651 cobalt transporter AT 98.0 2.2E-05 4.8E-10 72.9 9.1 38 116-153 29-66 (305)
276 TIGR03689 pup_AAA proteasome A 98.0 3.3E-05 7.1E-10 76.2 10.7 84 115-212 211-303 (512)
277 PRK11614 livF leucine/isoleuci 98.0 2.6E-05 5.6E-10 69.5 9.2 38 116-153 27-64 (237)
278 TIGR03411 urea_trans_UrtD urea 98.0 3.1E-05 6.6E-10 69.2 9.7 38 116-153 24-61 (242)
279 TIGR01242 26Sp45 26S proteasom 98.0 1.8E-05 4E-10 75.2 8.6 123 116-260 152-274 (364)
280 CHL00195 ycf46 Ycf46; Provisio 98.0 5.7E-05 1.2E-09 74.3 12.2 78 116-212 255-332 (489)
281 PRK13633 cobalt transporter AT 98.0 1.5E-05 3.3E-10 73.0 7.7 40 116-156 32-71 (280)
282 PHA00729 NTP-binding motif con 98.0 2.4E-05 5.2E-10 69.1 8.5 72 109-211 10-95 (226)
283 PRK12727 flagellar biosynthesi 98.0 7.6E-05 1.7E-09 73.4 12.8 91 116-210 346-440 (559)
284 PRK13632 cbiO cobalt transport 98.0 2.3E-05 5.1E-10 71.4 8.7 37 116-152 31-67 (271)
285 PRK14722 flhF flagellar biosyn 98.0 2.8E-05 6.1E-10 73.8 9.4 86 117-210 134-227 (374)
286 cd03251 ABCC_MsbA MsbA is an e 98.0 3.3E-05 7.1E-10 68.6 9.4 38 116-153 24-61 (234)
287 COG1123 ATPase components of v 98.0 3.9E-05 8.4E-10 75.4 10.5 39 117-155 32-74 (539)
288 PRK11231 fecE iron-dicitrate t 98.0 3E-05 6.4E-10 70.0 9.1 36 117-152 25-60 (255)
289 PRK14086 dnaA chromosomal repl 98.0 4.6E-05 9.9E-10 76.3 11.1 103 121-256 315-419 (617)
290 PRK13643 cbiO cobalt transport 98.0 2.3E-05 5.1E-10 72.1 8.6 40 116-156 28-67 (288)
291 TIGR02770 nickel_nikD nickel i 98.0 3.2E-05 6.8E-10 68.7 9.1 30 117-146 9-38 (230)
292 cd03264 ABC_drug_resistance_li 98.0 4.5E-05 9.8E-10 66.7 9.9 36 117-153 23-58 (211)
293 PRK13539 cytochrome c biogenes 98.0 3.6E-05 7.7E-10 67.3 9.2 38 116-153 24-61 (207)
294 TIGR02769 nickel_nikE nickel i 98.0 3.1E-05 6.7E-10 70.3 9.1 36 117-152 34-69 (265)
295 TIGR03415 ABC_choXWV_ATP choli 98.0 1.2E-05 2.7E-10 76.7 6.6 39 117-156 47-85 (382)
296 cd03217 ABC_FeS_Assembly ABC-t 98.0 6E-06 1.3E-10 71.8 4.1 125 116-260 22-167 (200)
297 TIGR02868 CydC thiol reductant 98.0 2E-05 4.4E-10 78.5 8.4 35 117-151 358-392 (529)
298 COG2274 SunT ABC-type bacterio 98.0 2.6E-05 5.7E-10 79.8 9.3 58 116-173 495-554 (709)
299 PRK10419 nikE nickel transport 98.0 3.6E-05 7.8E-10 70.0 9.3 37 116-152 34-70 (268)
300 TIGR00750 lao LAO/AO transport 98.0 7E-05 1.5E-09 69.4 11.3 91 117-208 31-136 (300)
301 TIGR02982 heterocyst_DevA ABC 98.0 3.4E-05 7.4E-10 68.0 8.8 38 117-155 28-65 (220)
302 KOG0727 26S proteasome regulat 98.0 1.4E-05 3.1E-10 70.9 6.2 119 116-260 185-307 (408)
303 KOG1533 Predicted GTPase [Gene 98.0 2.9E-05 6.2E-10 68.1 7.9 117 123-256 5-137 (290)
304 cd03369 ABCC_NFT1 Domain 2 of 98.0 3.7E-05 8.1E-10 67.0 8.8 37 116-152 30-66 (207)
305 PRK15079 oligopeptide ABC tran 98.0 3E-05 6.5E-10 72.8 8.6 37 117-153 44-80 (331)
306 PRK10418 nikD nickel transport 98.0 3.2E-05 6.8E-10 69.8 8.5 29 117-145 26-54 (254)
307 PRK13639 cbiO cobalt transport 98.0 2.8E-05 6.1E-10 71.0 8.2 37 116-152 24-60 (275)
308 COG2087 CobU Adenosyl cobinami 98.0 9.6E-05 2.1E-09 61.6 10.4 127 122-260 2-134 (175)
309 PRK03695 vitamin B12-transport 98.0 4.3E-05 9.3E-10 68.7 9.2 28 117-144 19-46 (248)
310 PF05729 NACHT: NACHT domain 98.0 5.5E-05 1.2E-09 62.7 9.3 122 122-257 2-130 (166)
311 cd01133 F1-ATPase_beta F1 ATP 98.0 0.00011 2.4E-09 66.8 11.7 114 95-211 47-176 (274)
312 cd03260 ABC_PstB_phosphate_tra 98.0 4E-05 8.6E-10 67.8 8.8 37 116-152 22-63 (227)
313 PRK11176 lipid transporter ATP 98.0 5.6E-05 1.2E-09 76.2 11.0 56 117-173 366-424 (582)
314 PRK11174 cysteine/glutathione 98.0 4.1E-05 8.9E-10 77.3 10.0 55 117-173 373-430 (588)
315 PF00931 NB-ARC: NB-ARC domain 98.0 3.9E-05 8.4E-10 70.0 9.0 89 118-209 17-112 (287)
316 PRK06731 flhF flagellar biosyn 98.0 0.00015 3.2E-09 66.1 12.6 88 119-211 74-167 (270)
317 cd03224 ABC_TM1139_LivF_branch 97.9 2.2E-05 4.8E-10 69.1 7.0 38 116-153 22-59 (222)
318 cd03243 ABC_MutS_homologs The 97.9 3.7E-05 7.9E-10 67.0 8.2 27 119-145 28-54 (202)
319 PRK11701 phnK phosphonate C-P 97.9 5.2E-05 1.1E-09 68.5 9.5 37 117-153 29-65 (258)
320 PRK14088 dnaA chromosomal repl 97.9 8.9E-05 1.9E-09 72.3 11.6 75 121-211 131-207 (440)
321 PRK13649 cbiO cobalt transport 97.9 3.8E-05 8.3E-10 70.3 8.5 37 116-152 29-65 (280)
322 cd03244 ABCC_MRP_domain2 Domai 97.9 4.8E-05 1E-09 66.9 8.8 37 116-152 26-62 (221)
323 PF03029 ATP_bind_1: Conserved 97.9 3.6E-06 7.7E-11 75.4 1.6 37 125-161 1-37 (238)
324 cd00561 CobA_CobO_BtuR ATP:cor 97.9 0.00019 4.2E-09 60.0 11.9 91 122-212 4-109 (159)
325 PRK13645 cbiO cobalt transport 97.9 3E-05 6.6E-10 71.3 7.7 37 116-152 33-69 (289)
326 PRK15439 autoinducer 2 ABC tra 97.9 4E-05 8.6E-10 76.2 9.1 37 116-152 33-69 (510)
327 KOG0733 Nuclear AAA ATPase (VC 97.9 2.9E-05 6.3E-10 76.4 7.8 120 116-260 541-660 (802)
328 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.9 7E-05 1.5E-09 66.3 9.6 36 116-151 44-79 (224)
329 PRK13631 cbiO cobalt transport 97.9 5E-05 1.1E-09 71.0 9.1 38 116-153 48-85 (320)
330 COG4559 ABC-type hemin transpo 97.9 1.6E-05 3.6E-10 68.9 5.3 59 117-175 24-84 (259)
331 PRK12422 chromosomal replicati 97.9 9.4E-05 2E-09 72.2 11.1 74 121-211 142-215 (445)
332 COG4172 ABC-type uncharacteriz 97.9 0.00015 3.3E-09 68.5 11.9 48 197-260 443-490 (534)
333 PF13245 AAA_19: Part of AAA d 97.9 1.7E-05 3.8E-10 58.0 4.6 49 120-168 10-62 (76)
334 PRK15056 manganese/iron transp 97.9 3.8E-05 8.2E-10 70.1 7.8 35 116-150 29-63 (272)
335 PRK13638 cbiO cobalt transport 97.9 4.8E-05 1E-09 69.3 8.4 38 116-153 23-60 (271)
336 PRK09473 oppD oligopeptide tra 97.9 3.1E-05 6.6E-10 72.7 7.3 30 117-146 39-68 (330)
337 TIGR03771 anch_rpt_ABC anchore 97.9 0.00013 2.7E-09 64.6 10.9 34 117-150 3-36 (223)
338 TIGR01243 CDC48 AAA family ATP 97.9 9.6E-05 2.1E-09 76.7 11.6 79 115-212 207-285 (733)
339 PRK10938 putative molybdenum t 97.9 7.6E-05 1.7E-09 73.7 10.4 37 116-152 25-61 (490)
340 PRK13644 cbiO cobalt transport 97.9 4.8E-05 1E-09 69.5 8.3 36 117-152 25-60 (274)
341 PF08433 KTI12: Chromatin asso 97.9 9.2E-05 2E-09 67.5 10.0 77 122-211 3-83 (270)
342 cd03295 ABC_OpuCA_Osmoprotecti 97.9 0.0001 2.2E-09 65.9 10.2 37 116-152 23-59 (242)
343 PRK10762 D-ribose transporter 97.9 4.2E-05 9.1E-10 75.8 8.5 37 116-152 26-62 (501)
344 TIGR01978 sufC FeS assembly AT 97.9 9.7E-05 2.1E-09 65.9 10.0 28 116-143 22-49 (243)
345 cd01128 rho_factor Transcripti 97.9 4.4E-05 9.6E-10 68.7 7.7 100 106-211 5-116 (249)
346 KOG0744 AAA+-type ATPase [Post 97.9 7.6E-05 1.7E-09 68.5 9.1 133 117-261 174-311 (423)
347 cd03236 ABC_RNaseL_inhibitor_d 97.9 7E-05 1.5E-09 67.7 9.0 36 117-152 23-58 (255)
348 KOG0734 AAA+-type ATPase conta 97.9 4.4E-05 9.5E-10 74.1 7.9 78 112-211 332-409 (752)
349 TIGR03015 pepcterm_ATPase puta 97.9 5.3E-05 1.2E-09 68.5 8.2 93 117-211 39-136 (269)
350 PRK12723 flagellar biosynthesi 97.9 0.00016 3.5E-09 69.1 11.7 85 119-211 173-267 (388)
351 PRK09435 membrane ATPase/prote 97.9 0.00012 2.5E-09 68.7 10.5 92 119-210 55-160 (332)
352 PRK13547 hmuV hemin importer A 97.9 8.1E-05 1.8E-09 68.0 9.3 30 117-146 24-53 (272)
353 TIGR03797 NHPM_micro_ABC2 NHPM 97.9 5.7E-05 1.2E-09 77.7 9.2 36 117-152 476-511 (686)
354 KOG0730 AAA+-type ATPase [Post 97.9 5.9E-05 1.3E-09 74.9 8.8 117 115-256 463-579 (693)
355 PRK11022 dppD dipeptide transp 97.9 4.9E-05 1.1E-09 71.3 7.9 30 116-145 29-58 (326)
356 PRK09700 D-allose transporter 97.9 5.3E-05 1.1E-09 75.3 8.6 38 116-153 27-64 (510)
357 PRK13409 putative ATPase RIL; 97.8 0.0001 2.2E-09 74.5 10.6 37 115-151 360-396 (590)
358 TIGR01243 CDC48 AAA family ATP 97.8 9.9E-05 2.1E-09 76.5 10.8 121 116-260 483-603 (733)
359 TIGR00972 3a0107s01c2 phosphat 97.8 9.1E-05 2E-09 66.4 9.2 32 116-147 23-54 (247)
360 TIGR01241 FtsH_fam ATP-depende 97.8 4.8E-05 1E-09 75.3 8.1 117 121-260 89-206 (495)
361 COG1435 Tdk Thymidine kinase [ 97.8 0.00018 4E-09 61.6 10.4 115 118-256 2-119 (201)
362 TIGR00362 DnaA chromosomal rep 97.8 0.00015 3.4E-09 69.9 11.4 75 120-211 136-212 (405)
363 PRK13541 cytochrome c biogenes 97.8 0.00013 2.8E-09 63.1 9.8 37 116-152 22-58 (195)
364 PRK14267 phosphate ABC transpo 97.8 0.00012 2.6E-09 65.9 9.8 30 116-145 26-55 (253)
365 TIGR02857 CydD thiol reductant 97.8 8.6E-05 1.9E-09 74.0 9.6 37 116-152 344-380 (529)
366 PRK00149 dnaA chromosomal repl 97.8 0.00022 4.7E-09 69.8 12.1 75 120-211 148-224 (450)
367 cd03114 ArgK-like The function 97.8 0.00011 2.4E-09 60.8 8.6 39 123-161 2-40 (148)
368 PRK13641 cbiO cobalt transport 97.8 8E-05 1.7E-09 68.5 8.5 36 116-151 29-64 (287)
369 PRK15093 antimicrobial peptide 97.8 0.0001 2.2E-09 69.2 9.3 29 116-144 29-57 (330)
370 PRK14087 dnaA chromosomal repl 97.8 0.00016 3.5E-09 70.6 11.0 105 121-256 142-248 (450)
371 TIGR03796 NHPM_micro_ABC1 NHPM 97.8 6.3E-05 1.4E-09 77.7 8.6 36 117-152 502-537 (710)
372 COG1117 PstB ABC-type phosphat 97.8 0.0002 4.2E-09 62.4 10.1 58 115-173 28-95 (253)
373 TIGR00962 atpA proton transloc 97.8 0.00014 3E-09 71.7 10.3 114 95-211 139-266 (501)
374 PRK10790 putative multidrug tr 97.8 0.00011 2.3E-09 74.4 9.8 36 117-152 364-399 (592)
375 KOG0739 AAA+-type ATPase [Post 97.8 6.8E-05 1.5E-09 68.2 7.4 89 101-212 151-239 (439)
376 PRK13343 F0F1 ATP synthase sub 97.8 0.00011 2.4E-09 72.1 9.5 114 95-211 140-267 (502)
377 PRK10982 galactose/methyl gala 97.8 6.8E-05 1.5E-09 74.1 8.1 36 116-151 20-55 (491)
378 PRK10261 glutathione transport 97.8 8.5E-05 1.8E-09 75.6 9.0 37 117-153 347-383 (623)
379 CHL00059 atpA ATP synthase CF1 97.8 0.0001 2.2E-09 71.9 9.0 114 95-211 119-246 (485)
380 TIGR03269 met_CoM_red_A2 methy 97.8 0.0001 2.2E-09 73.4 9.4 38 116-153 22-61 (520)
381 PRK11288 araG L-arabinose tran 97.8 7E-05 1.5E-09 74.3 8.1 37 116-152 26-62 (501)
382 COG2401 ABC-type ATPase fused 97.8 0.00021 4.5E-09 67.8 10.6 127 117-260 406-571 (593)
383 TIGR03375 type_I_sec_LssB type 97.8 8E-05 1.7E-09 76.8 8.8 36 117-152 488-523 (694)
384 TIGR01842 type_I_sec_PrtD type 97.8 0.00012 2.7E-09 73.2 9.9 37 116-152 340-376 (544)
385 PRK09376 rho transcription ter 97.8 0.00013 2.8E-09 69.4 9.3 106 100-211 152-269 (416)
386 PF13604 AAA_30: AAA domain; P 97.8 0.00017 3.7E-09 62.6 9.5 110 119-257 17-131 (196)
387 cd03280 ABC_MutS2 MutS2 homolo 97.8 0.0001 2.2E-09 64.1 8.1 25 119-143 26-51 (200)
388 KOG0058 Peptide exporter, ABC 97.8 0.00019 4.2E-09 72.1 10.8 37 116-152 490-526 (716)
389 PRK13546 teichoic acids export 97.8 0.00028 6.2E-09 64.1 11.2 35 117-151 47-81 (264)
390 PRK13549 xylose transporter AT 97.8 8.2E-05 1.8E-09 73.8 8.2 30 116-145 27-56 (506)
391 PF07015 VirC1: VirC1 protein; 97.8 0.00021 4.5E-09 63.2 9.7 85 122-207 4-92 (231)
392 PRK13657 cyclic beta-1,2-gluca 97.8 0.00013 2.8E-09 73.8 9.7 35 117-151 358-392 (588)
393 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.7 0.00049 1.1E-08 59.8 12.1 126 117-257 35-203 (205)
394 KOG0061 Transporter, ABC super 97.7 0.00013 2.8E-09 74.0 9.5 32 115-146 51-82 (613)
395 PLN00020 ribulose bisphosphate 97.7 0.0003 6.5E-09 66.3 11.1 80 115-213 143-227 (413)
396 TIGR03324 alt_F1F0_F1_al alter 97.7 0.00018 3.8E-09 70.4 9.9 114 95-211 140-267 (497)
397 TIGR01193 bacteriocin_ABC ABC- 97.7 0.0001 2.2E-09 76.2 8.7 36 117-152 497-532 (708)
398 PRK11288 araG L-arabinose tran 97.7 0.0001 2.3E-09 73.0 8.5 37 117-153 276-312 (501)
399 PRK07165 F0F1 ATP synthase sub 97.7 0.00025 5.5E-09 69.4 10.9 113 95-211 121-246 (507)
400 PRK10789 putative multidrug tr 97.7 0.00019 4E-09 72.4 10.4 37 117-153 338-374 (569)
401 PF05625 PAXNEB: PAXNEB protei 97.7 0.00036 7.8E-09 66.3 11.7 176 97-293 26-278 (363)
402 PRK12608 transcription termina 97.7 0.00011 2.4E-09 69.5 7.8 104 102-211 118-233 (380)
403 TIGR02204 MsbA_rel ABC transpo 97.7 0.00024 5.2E-09 71.6 10.9 36 117-152 363-398 (576)
404 TIGR01846 type_I_sec_HlyB type 97.7 0.00017 3.8E-09 74.3 10.0 37 116-152 479-515 (694)
405 PRK14723 flhF flagellar biosyn 97.7 0.00026 5.6E-09 72.6 10.9 86 117-210 182-275 (767)
406 cd03289 ABCC_CFTR2 The CFTR su 97.7 0.00028 6E-09 64.6 10.1 39 117-157 27-65 (275)
407 cd03227 ABC_Class2 ABC-type Cl 97.7 0.00026 5.7E-09 59.4 9.2 116 119-260 20-144 (162)
408 CHL00176 ftsH cell division pr 97.7 0.00015 3.2E-09 73.7 9.0 117 120-258 216-332 (638)
409 TIGR02203 MsbA_lipidA lipid A 97.7 0.00022 4.8E-09 71.7 10.3 37 117-153 355-391 (571)
410 PRK14259 phosphate ABC transpo 97.7 0.00019 4.2E-09 65.3 8.8 29 116-144 35-63 (269)
411 KOG0652 26S proteasome regulat 97.7 0.00014 3E-09 65.0 7.5 120 115-256 200-319 (424)
412 COG0464 SpoVK ATPases of the A 97.7 0.00017 3.6E-09 71.4 9.0 120 116-260 272-391 (494)
413 PRK09087 hypothetical protein; 97.7 0.00014 2.9E-09 64.7 7.5 69 75-156 6-75 (226)
414 TIGR01192 chvA glucan exporter 97.7 0.0002 4.3E-09 72.4 9.6 36 117-152 358-393 (585)
415 PRK09700 D-allose transporter 97.7 0.00012 2.6E-09 72.7 7.9 37 117-153 286-322 (510)
416 PRK00889 adenylylsulfate kinas 97.7 7.6E-05 1.6E-09 63.3 5.6 40 118-157 2-41 (175)
417 TIGR01194 cyc_pep_trnsptr cycl 97.7 0.0002 4.4E-09 71.9 9.5 36 117-152 365-400 (555)
418 PRK13695 putative NTPase; Prov 97.7 0.00015 3.2E-09 61.5 7.3 34 122-155 2-36 (174)
419 TIGR00708 cobA cob(I)alamin ad 97.7 0.00088 1.9E-08 56.8 11.8 91 122-212 7-111 (173)
420 PRK10762 D-ribose transporter 97.7 0.00015 3.3E-09 71.9 8.4 37 117-153 275-311 (501)
421 PF09848 DUF2075: Uncharacteri 97.7 0.00017 3.8E-09 68.2 8.5 92 121-212 2-97 (352)
422 COG0552 FtsY Signal recognitio 97.7 0.00056 1.2E-08 63.3 11.4 111 119-248 138-255 (340)
423 PRK14258 phosphate ABC transpo 97.7 0.00031 6.7E-09 63.6 9.8 30 117-146 30-59 (261)
424 COG4544 Uncharacterized conser 97.7 0.00029 6.2E-09 61.5 8.9 136 97-254 31-168 (260)
425 TIGR00958 3a01208 Conjugate Tr 97.7 0.00018 4E-09 74.3 9.2 36 117-152 504-539 (711)
426 PRK10522 multidrug transporter 97.7 0.00015 3.2E-09 72.7 8.3 36 117-152 346-381 (547)
427 PRK05986 cob(I)alamin adenolsy 97.6 0.00085 1.8E-08 57.8 11.7 94 119-212 21-129 (191)
428 PRK08233 hypothetical protein; 97.6 0.00012 2.6E-09 62.0 6.5 82 120-207 3-86 (182)
429 cd02037 MRP-like MRP (Multiple 97.6 0.00025 5.5E-09 59.7 8.4 76 122-210 2-79 (169)
430 COG4175 ProV ABC-type proline/ 97.6 0.00048 1E-08 63.3 10.5 123 117-259 51-227 (386)
431 PRK11160 cysteine/glutathione 97.6 0.00022 4.7E-09 72.0 9.3 37 116-152 362-398 (574)
432 TIGR02928 orc1/cdc6 family rep 97.6 0.00045 9.7E-09 65.4 11.0 87 121-211 41-142 (365)
433 PRK14263 phosphate ABC transpo 97.6 0.00026 5.6E-09 64.2 9.0 30 116-145 30-59 (261)
434 PRK09281 F0F1 ATP synthase sub 97.6 0.0004 8.8E-09 68.4 10.8 114 95-211 140-267 (502)
435 COG0488 Uup ATPase components 97.6 0.00032 7E-09 69.7 10.2 46 116-161 25-78 (530)
436 PRK00411 cdc6 cell division co 97.6 0.00039 8.5E-09 66.6 10.6 87 121-211 56-151 (394)
437 KOG0738 AAA+-type ATPase [Post 97.6 0.00022 4.8E-09 67.0 8.4 91 100-213 229-319 (491)
438 TIGR00767 rho transcription te 97.6 0.00018 3.9E-09 68.6 8.0 102 104-211 155-268 (415)
439 COG1132 MdlB ABC-type multidru 97.6 0.00037 8.1E-09 70.1 10.9 58 116-174 351-411 (567)
440 PRK09280 F0F1 ATP synthase sub 97.6 0.00062 1.3E-08 66.2 11.9 114 95-211 122-251 (463)
441 TIGR03305 alt_F1F0_F1_bet alte 97.6 0.00056 1.2E-08 66.4 11.5 114 95-211 116-245 (449)
442 TIGR03269 met_CoM_red_A2 methy 97.6 0.00026 5.6E-09 70.5 9.6 37 117-153 307-343 (520)
443 TIGR02858 spore_III_AA stage I 97.6 0.00017 3.7E-09 65.7 7.5 123 106-257 100-229 (270)
444 PF02283 CobU: Cobinamide kina 97.6 4.7E-05 1E-09 64.4 3.6 122 123-260 1-128 (167)
445 cd00550 ArsA_ATPase Oxyanion-t 97.6 0.00036 7.8E-09 63.1 9.6 39 122-160 2-40 (254)
446 cd02034 CooC The accessory pro 97.6 0.00048 1E-08 54.7 9.2 85 123-211 2-99 (116)
447 COG1137 YhbG ABC-type (unclass 97.6 1.6E-05 3.5E-10 68.4 0.7 63 116-178 26-91 (243)
448 TIGR02633 xylG D-xylose ABC tr 97.6 0.00018 3.9E-09 71.3 8.3 30 116-145 23-52 (500)
449 TIGR01187 potA spermidine/putr 97.6 0.00013 2.9E-09 68.3 6.9 28 125-152 1-28 (325)
450 COG4148 ModC ABC-type molybdat 97.6 9.1E-05 2E-09 66.8 5.4 56 118-173 22-83 (352)
451 PRK14269 phosphate ABC transpo 97.6 0.00057 1.2E-08 61.2 10.8 28 117-144 25-52 (246)
452 PF00006 ATP-synt_ab: ATP synt 97.6 0.00036 7.9E-09 61.4 9.2 104 103-211 1-118 (215)
453 PRK10261 glutathione transport 97.6 9.1E-05 2E-09 75.4 6.2 37 116-152 38-74 (623)
454 COG0444 DppD ABC-type dipeptid 97.6 0.00014 2.9E-09 67.0 6.7 30 116-145 27-56 (316)
455 PRK09099 type III secretion sy 97.6 0.00021 4.6E-09 69.2 8.2 112 96-211 142-266 (441)
456 PTZ00185 ATPase alpha subunit; 97.6 0.00041 9E-09 67.9 10.2 114 95-211 167-302 (574)
457 TIGR01257 rim_protein retinal- 97.6 0.00021 4.5E-09 80.7 9.2 38 116-153 1961-1998(2272)
458 PRK14254 phosphate ABC transpo 97.6 0.00037 7.9E-09 64.1 9.4 28 117-144 62-89 (285)
459 PRK13545 tagH teichoic acids e 97.6 0.00043 9.4E-09 68.4 10.4 36 116-151 46-81 (549)
460 PTZ00265 multidrug resistance 97.6 0.00037 8.1E-09 77.2 11.1 38 116-153 407-444 (1466)
461 KOG0726 26S proteasome regulat 97.6 9.4E-05 2E-09 67.1 5.2 121 116-259 215-336 (440)
462 PRK10938 putative molybdenum t 97.6 0.00033 7E-09 69.3 9.6 37 117-153 283-320 (490)
463 PRK13549 xylose transporter AT 97.6 0.00018 4E-09 71.3 7.8 38 116-153 284-322 (506)
464 TIGR00955 3a01204 The Eye Pigm 97.6 0.00034 7.3E-09 71.2 9.8 31 115-145 46-76 (617)
465 COG3854 SpoIIIAA ncharacterize 97.6 0.00054 1.2E-08 60.3 9.5 108 118-257 134-253 (308)
466 COG1119 ModF ABC-type molybden 97.6 0.0014 3E-08 58.3 12.2 56 116-171 53-111 (257)
467 PRK12597 F0F1 ATP synthase sub 97.6 0.00063 1.4E-08 66.3 11.1 114 95-211 121-250 (461)
468 cd01135 V_A-ATPase_B V/A-type 97.6 0.0008 1.7E-08 61.2 11.0 114 95-211 47-179 (276)
469 PRK15134 microcin C ABC transp 97.6 0.00027 5.8E-09 70.6 8.8 36 116-152 308-343 (529)
470 PRK14247 phosphate ABC transpo 97.6 0.00044 9.5E-09 62.1 9.4 30 116-145 25-54 (250)
471 TIGR01039 atpD ATP synthase, F 97.6 0.00079 1.7E-08 65.4 11.6 114 95-211 121-250 (461)
472 PRK15439 autoinducer 2 ABC tra 97.6 0.00022 4.7E-09 71.0 8.1 36 116-151 285-320 (510)
473 COG1419 FlhF Flagellar GTP-bin 97.6 0.00033 7.1E-09 66.5 8.8 82 119-208 202-291 (407)
474 PRK09580 sufC cysteine desulfu 97.6 0.00039 8.4E-09 62.3 9.0 29 116-144 23-51 (248)
475 cd02028 UMPK_like Uridine mono 97.6 0.00025 5.5E-09 60.6 7.4 40 122-161 1-40 (179)
476 PRK07721 fliI flagellum-specif 97.6 0.001 2.2E-08 64.7 12.3 111 97-211 138-261 (438)
477 PF02492 cobW: CobW/HypB/UreG, 97.6 0.0002 4.4E-09 61.0 6.7 86 122-208 2-94 (178)
478 PRK08972 fliI flagellum-specif 97.6 0.00027 5.9E-09 68.2 8.1 112 95-211 140-265 (444)
479 COG4136 ABC-type uncharacteriz 97.5 0.00074 1.6E-08 55.7 9.4 29 117-145 25-53 (213)
480 COG4988 CydD ABC-type transpor 97.5 0.00084 1.8E-08 66.2 11.4 57 117-173 344-402 (559)
481 PRK07196 fliI flagellum-specif 97.5 0.00011 2.3E-09 71.1 5.1 47 95-144 133-179 (434)
482 PLN03232 ABC transporter C fam 97.5 0.00036 7.8E-09 77.7 9.9 39 117-156 1259-1297(1495)
483 TIGR02546 III_secr_ATP type II 97.5 0.00045 9.7E-09 66.9 9.3 113 95-211 123-248 (422)
484 PF03308 ArgK: ArgK protein; 97.5 0.00024 5.2E-09 63.7 6.8 89 119-208 28-131 (266)
485 CHL00060 atpB ATP synthase CF1 97.5 0.00077 1.7E-08 65.9 10.8 64 95-161 139-203 (494)
486 PRK05922 type III secretion sy 97.5 0.0005 1.1E-08 66.5 9.5 112 95-211 135-260 (434)
487 cd03271 ABC_UvrA_II The excisi 97.5 0.0019 4.1E-08 58.6 12.7 28 116-143 17-44 (261)
488 COG0488 Uup ATPase components 97.5 0.0007 1.5E-08 67.3 10.7 124 116-260 344-499 (530)
489 cd01131 PilT Pilus retraction 97.5 0.00043 9.4E-09 60.1 8.2 77 122-207 3-83 (198)
490 PRK13409 putative ATPase RIL; 97.5 0.00036 7.9E-09 70.5 8.8 35 117-151 96-130 (590)
491 PRK06793 fliI flagellum-specif 97.5 0.00043 9.3E-09 66.9 8.8 110 98-211 137-259 (432)
492 PRK15064 ABC transporter ATP-b 97.5 0.00033 7.1E-09 70.0 8.3 31 116-146 23-53 (530)
493 KOG1433 DNA repair protein RAD 97.5 2.1E-05 4.6E-10 72.9 -0.2 144 65-209 5-150 (326)
494 COG1703 ArgK Putative periplas 97.5 0.00081 1.8E-08 61.3 9.9 89 119-208 50-153 (323)
495 PRK14493 putative bifunctional 97.5 0.0006 1.3E-08 62.3 9.3 83 122-210 3-99 (274)
496 PRK08472 fliI flagellum-specif 97.5 0.00061 1.3E-08 65.9 9.7 112 95-211 135-259 (434)
497 TIGR02633 xylG D-xylose ABC tr 97.5 0.00024 5.1E-09 70.4 7.1 37 117-153 283-320 (500)
498 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00064 1.4E-08 59.8 9.0 25 120-144 29-53 (213)
499 cd03285 ABC_MSH2_euk MutS2 hom 97.5 0.00049 1.1E-08 61.0 8.3 29 117-145 27-55 (222)
500 PF02374 ArsA_ATPase: Anion-tr 97.5 0.001 2.2E-08 61.8 10.4 41 121-161 2-42 (305)
No 1
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=1e-43 Score=327.20 Aligned_cols=238 Identities=52% Similarity=0.772 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 66 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+.++++.+++++.+.|+++..|++.+. .....+.+|||++.||.+||+||+|+|.+++|+||||+|||+||++++.+++
T Consensus 2 ~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 2 KQKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred chHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999888763 3457889999999999999889999999999999999999999999999999
Q ss_pred hcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCCh
Q 021239 146 KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (315)
Q Consensus 146 ~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~ 225 (315)
+.|++|+||++|+++++.+++++|++.+++++.++++.+++++.+..++++..+++|||||+++++++.+++++.++.+.
T Consensus 81 ~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~ 160 (325)
T cd00983 81 KLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHV 160 (325)
T ss_pred HcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999987788887777777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeeccc
Q 021239 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNILE 305 (315)
Q Consensus 226 ~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g~~ 305 (315)
+.|+|.+.+.+++|..+++++++++|+|||++..+ +.+|+ +++.++||++|.|+++.|+.++|.+.+|++++++|++
T Consensus 161 ~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i--g~~~g-~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~ 237 (325)
T cd00983 161 GLQARLMSQALRKLTGSINKSNTTVIFINQLREKI--GVMFG-NPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNR 237 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--ccccC-CCccCCCchHHhhhcceEEEEEeecccccCCcccccE
Confidence 78888899999999999999999999999999998 55787 7899999999999999999999999999999999998
Q ss_pred ee
Q 021239 306 VV 307 (315)
Q Consensus 306 ~~ 307 (315)
++
T Consensus 238 ~~ 239 (325)
T cd00983 238 TK 239 (325)
T ss_pred EE
Confidence 54
No 2
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=1.7e-43 Score=327.86 Aligned_cols=240 Identities=52% Similarity=0.756 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++.++++.+++++.+.||++..|++.+.. ....+.+|||++.||.+||+||+|+|.+++|+||||+||||||++++.+
T Consensus 5 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~-~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 5 EEKQKALEAALKQIEKQFGKGSIMRLGDDA-AMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceEccccc-ccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467789999999999999999999887643 2368899999999999998899999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
+++.|++|+||++|+++++.+++++|++++++.+.++++.++.++.+..++++..+++|||||+++++++.+++++.++.
T Consensus 84 ~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~ 163 (349)
T PRK09354 84 AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDS 163 (349)
T ss_pred HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999878888887777
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
+.+.++|.+.+.|++|..++++++|++|+|||++.++ +.+|+ +++.|.||++|.|++++|+.++|...+|+++.++|
T Consensus 164 ~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~i--g~~~g-~pe~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G 240 (349)
T PRK09354 164 HVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKI--GVMFG-NPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIG 240 (349)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeecc--ccccC-CCCcCCCchhhHhhheeeeEEecccccccCCceec
Confidence 7778888888999999999999999999999999998 45676 78899999999999999999999999999999999
Q ss_pred ccee
Q 021239 304 LEVV 307 (315)
Q Consensus 304 ~~~~ 307 (315)
++++
T Consensus 241 ~~~r 244 (349)
T PRK09354 241 NRTK 244 (349)
T ss_pred ceEE
Confidence 9864
No 3
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=100.00 E-value=1.3e-42 Score=318.84 Aligned_cols=238 Identities=51% Similarity=0.750 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc
Q 021239 68 NALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL 147 (315)
Q Consensus 68 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~ 147 (315)
++++.++++++++||++..+++.+.......+.+|||++.||.+||+||+|+|.+++|+|++++|||||++++++++++.
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~ 80 (322)
T PF00154_consen 1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ 80 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence 46888999999999999888887644345788999999999999998999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHH
Q 021239 148 GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDA 227 (315)
Q Consensus 148 g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~ 227 (315)
++.|+|||.|.++++.+++.+|++++++.+.+|++.|+.++.++.+++.+.+++|||||+.++.|+.+++++.++.+.+.
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~ 160 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL 160 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeecccee
Q 021239 228 QSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNILEVV 307 (315)
Q Consensus 228 q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g~~~~ 307 (315)
++|.+++.++++...+.+.++++|+|||+++++ +.+|| +++.++||++|.|++++||.++|.+++|++++++|+++.
T Consensus 161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~i--g~~~g-~~~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~ 237 (322)
T PF00154_consen 161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKI--GVMFG-NPETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIK 237 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSS--SSSSS-SSSCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHH--hhccC-CCcCCCCCchhhhhhhhHHhhhcccccccCCcccccEEE
Confidence 999999999999999999999999999999999 55788 788899999999999999999999999999999999876
Q ss_pred c
Q 021239 308 N 308 (315)
Q Consensus 308 ~ 308 (315)
-
T Consensus 238 v 238 (322)
T PF00154_consen 238 V 238 (322)
T ss_dssp E
T ss_pred E
Confidence 3
No 4
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=1e-42 Score=320.47 Aligned_cols=239 Identities=50% Similarity=0.746 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 66 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+.++++.+++|++++||++..|++.+. .....+.+|||++.||.+||+||+|+|++++|+||||+||||||++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 2 KQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred hHHHHHHHHHHHHHHcCcceeEECccc-ccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999888752 2357889999999999999878999999999999999999999999999999
Q ss_pred hcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCCh
Q 021239 146 KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (315)
Q Consensus 146 ~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~ 225 (315)
+.|++|+||++|+++++.+++++|++.+++.+.++++.++.++.+..++++..+++|||||+++++++.+++++.++.+.
T Consensus 81 ~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~ 160 (321)
T TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160 (321)
T ss_pred HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccch
Confidence 99999999999999999999999999999999999999999999999998899999999999999987788887777777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeeccc
Q 021239 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNILE 305 (315)
Q Consensus 226 ~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g~~ 305 (315)
+.++|.+.+.+++|..+++++|+++|+|||++..+ +.+|+ +++.+.||++|.|+++.|+.++|...+|+++.++|++
T Consensus 161 ~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~--g~~~~-~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~ 237 (321)
T TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIREKI--GVMFG-NPETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNR 237 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecc--CcccC-CCccCcCccHHHHHHhHhHhhhhhhccccCCceeccE
Confidence 78888888999999999999999999999999988 45777 7888999999999999999999999999999999998
Q ss_pred eec
Q 021239 306 VVN 308 (315)
Q Consensus 306 ~~~ 308 (315)
++-
T Consensus 238 ~~~ 240 (321)
T TIGR02012 238 TKV 240 (321)
T ss_pred EEE
Confidence 753
No 5
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=100.00 E-value=1.1e-38 Score=320.17 Aligned_cols=239 Identities=44% Similarity=0.712 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++.+.++.++.++++.||++..+.+.+.. ......++||+++||.+||+||+++|++++|+|+||+|||+||++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a 84 (790)
T PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDEA-RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (790)
T ss_pred HHHHHHHHHHHHHHHHhccchhccccccc-ccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46668999999999999999988876632 35778999999999999976899999999999999999999999999999
Q ss_pred HhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 145 QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 145 ~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
+..|++|+||++|+++.+.+++++|++++++.+.++.+.+++++.+..++++.++++|||||+++++++.++++..++..
T Consensus 85 ~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~ 164 (790)
T PRK09519 85 QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSH 164 (790)
T ss_pred HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999888999999999999997788887766655
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeecc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNIL 304 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g~ 304 (315)
.+.|++.+.+.|++|.++++++|+++|+|||++..+ +.+|+ ++++|.||++|.|++++||.++|..++|++.+.+|+
T Consensus 165 ~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~--g~~fg-~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~ 241 (790)
T PRK09519 165 VGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI--GVMFG-SPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecC--CCcCC-CCCcCCCCcccceeccEEEEeeeccccccCccccce
Confidence 667788788999999999999999999999999998 45786 889999999999999999999999999988878887
Q ss_pred cee
Q 021239 305 EVV 307 (315)
Q Consensus 305 ~~~ 307 (315)
++.
T Consensus 242 ~~~ 244 (790)
T PRK09519 242 RTR 244 (790)
T ss_pred EEE
Confidence 653
No 6
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-36 Score=269.55 Aligned_cols=222 Identities=49% Similarity=0.725 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 67 DNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 67 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
.++....+.+....++....+.............++||+..||.+|| ||+|.|.+++|+||+|+|||++|+++++++++
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~ 86 (279)
T COG0468 8 EKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVANAQK 86 (279)
T ss_pred hhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHHhhc
Confidence 34455566677777777655444222223468999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCCChHHHHHcCCC-CCCeEEeCCCCHHHHHHHHHHHHHcCC--ccEEeehhHhhhccccccCCCccCC
Q 021239 147 LGGYCAYLDVENALDPSLAEAMGID-AENLLIAQPDSAENLLSVVDTLTKSGS--IDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 147 ~g~~v~~i~~E~~~~~~~~~~~g~~-~~~l~i~~~~~~e~~~~~i~~l~~~~~--~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
.|++|+|||+|+++++.|++.++.+ .+++++.++++.++..+++..+..... +++|||||++++++....+ +.
T Consensus 87 ~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~----d~ 162 (279)
T COG0468 87 PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE----DG 162 (279)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----cc
Confidence 9999999999999999999999999 999999999999999999988887666 9999999999999754433 24
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFK 296 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k 296 (315)
....+++.+++.++.|..++++++++||++||++.++ +.+|+ +++.|.||+++.|++++|++++|....|
T Consensus 163 ~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~--~~~f~-~~~~~~GG~~L~~~as~rl~l~k~~~~~ 232 (279)
T COG0468 163 HLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKI--GVMFG-DPETTTGGNALKFYASVRLDLRRIESLK 232 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeec--CcccC-CcccCCCchHHHhhhheEEEEeeccccc
Confidence 4567788899999999999999999999999999999 56787 8899999999999999999999997766
No 7
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=6.4e-34 Score=263.04 Aligned_cols=224 Identities=25% Similarity=0.328 Sum_probs=171.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHH
Q 021239 61 AKIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHV 140 (315)
Q Consensus 61 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~l 140 (315)
++..+..+.++.+.+.+...|.++..+.-. .....+++||+++||.+|| ||+++|++++|+|+||+|||+||+++
T Consensus 42 ls~~~~~~i~~~~~~~~~~~~~ta~~~~~~----~~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lql 116 (313)
T TIGR02238 42 LSEAKVDKIKEAASKIINPGFITAFEISQK----RKKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTL 116 (313)
T ss_pred CCHHHHHHHHHHHHhhhcccCccHHHHHHh----hccCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHH
Confidence 344444444444444444445554432111 2456789999999999999 99999999999999999999999999
Q ss_pred HHHHHh------cCCeEEEEecCCCCChH----HHHHcCCCC----CCeEEeCCCCHHHHHHHHHH---HHHcCCccEEe
Q 021239 141 IKEAQK------LGGYCAYLDVENALDPS----LAEAMGIDA----ENLLIAQPDSAENLLSVVDT---LTKSGSIDVIV 203 (315)
Q Consensus 141 a~~~~~------~g~~v~~i~~E~~~~~~----~~~~~g~~~----~~l~i~~~~~~e~~~~~i~~---l~~~~~~~lVV 203 (315)
+.+++. .+++|+|||+|+++.++ +++++|+++ +++++.++.+.+++.+.+.. .+.+.++++||
T Consensus 117 a~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvV 196 (313)
T TIGR02238 117 CVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLI 196 (313)
T ss_pred HHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEE
Confidence 988763 36799999999998774 567788875 47888888888887766655 34567899999
Q ss_pred ehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcccccccccccccc
Q 021239 204 VDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYA 283 (315)
Q Consensus 204 IDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~ 283 (315)
|||++++++ .++.+.. + ...+ .+.+.+.+..|.++++++|++||+|||++.+.+...+|..++.+|+||++|+|++
T Consensus 197 IDSisal~r-~~~~~~g-~-~~~r-~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~ 272 (313)
T TIGR02238 197 VDSIMALFR-VDFSGRG-E-LSER-QQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHAS 272 (313)
T ss_pred EEcchHhhh-hhccCcc-c-hHHH-HHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhhe
Confidence 999999984 5554321 1 1122 2337778888999999999999999999998855445644688999999999999
Q ss_pred ceEEEEEecc
Q 021239 284 ALRLRMMRTR 293 (315)
Q Consensus 284 ~~rl~l~k~~ 293 (315)
++||.++|.+
T Consensus 273 ~~Rl~l~k~~ 282 (313)
T TIGR02238 273 TTRILLRKGR 282 (313)
T ss_pred eEEEEEEecC
Confidence 9999999864
No 8
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=8.5e-34 Score=264.13 Aligned_cols=224 Identities=26% Similarity=0.329 Sum_probs=171.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHH
Q 021239 60 DAKIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALH 139 (315)
Q Consensus 60 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~ 139 (315)
+++..+.++.++.+.+.+...|.++..+... .....+++||+++||.+|| ||++.|.+++|+|+||+|||+||++
T Consensus 71 g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~----~~~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lq 145 (344)
T PLN03187 71 GLSEAKVDKICEAAEKLLNQGFITGSDALLK----RKSVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHT 145 (344)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHhh----hccCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHH
Confidence 3444444444444444455555444332111 2356789999999999999 9999999999999999999999999
Q ss_pred HHHHHHh------cCCeEEEEecCCCCChH----HHHHcCCCC----CCeEEeCCCCHHHHHHHHHH---HHHcCCccEE
Q 021239 140 VIKEAQK------LGGYCAYLDVENALDPS----LAEAMGIDA----ENLLIAQPDSAENLLSVVDT---LTKSGSIDVI 202 (315)
Q Consensus 140 la~~~~~------~g~~v~~i~~E~~~~~~----~~~~~g~~~----~~l~i~~~~~~e~~~~~i~~---l~~~~~~~lV 202 (315)
++.+++. .+++|+|||+|+++.+. +++++|+++ +++.+.++.+.+++.+.+.. .+.+.++++|
T Consensus 146 lav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~Lv 225 (344)
T PLN03187 146 LCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 (344)
T ss_pred HHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9988864 13799999999998875 466778875 57889999998877766554 4556789999
Q ss_pred eehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccc
Q 021239 203 VVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFY 282 (315)
Q Consensus 203 VIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~ 282 (315)
||||+++++ +.++.+.. ....+ .+.+.+.++.|.++++++|++||++||++.+++++..|+ ++.+|+||+.|.|+
T Consensus 226 VIDSital~-r~~~~~rg--~l~~r-q~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~-~~~~pagG~~~~h~ 300 (344)
T PLN03187 226 IVDSVIALF-RVDFTGRG--ELAER-QQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFIS-DPKKPAGGHVLAHA 300 (344)
T ss_pred EEeCcHHhh-hccccCcc--chHHH-HHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccC-CCCCCCCchhhhee
Confidence 999999998 45554331 11122 334778888899999999999999999999886655554 88899999999999
Q ss_pred cceEEEEEecc
Q 021239 283 AALRLRMMRTR 293 (315)
Q Consensus 283 ~~~rl~l~k~~ 293 (315)
+++||.++|.+
T Consensus 301 ~~~Rl~l~k~~ 311 (344)
T PLN03187 301 ATIRLMLRKGK 311 (344)
T ss_pred eeEEEEEEcCC
Confidence 99999999864
No 9
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=7.9e-33 Score=249.64 Aligned_cols=192 Identities=31% Similarity=0.442 Sum_probs=150.6
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChHH----HH
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSL----AE 166 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~~----~~ 166 (315)
....|+||++.||.+|+ ||++.|.+++|+|+||+|||+||++++.+++. .+++|+|||+|..++..| ++
T Consensus 16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 45679999999999999 99999999999999999999999999998873 267999999999999865 44
Q ss_pred HcCCC----CCCeEEeCCCCHHHHHHHHHHH---HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHH
Q 021239 167 AMGID----AENLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (315)
Q Consensus 167 ~~g~~----~~~l~i~~~~~~e~~~~~i~~l---~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L 239 (315)
+++++ .+++.+.++.+.+++.+.+..+ +.+.++++|||||+++++ +.++.+.. ....+.+.+.+.+..|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~~---~~~~R~~~L~~~~~~L 170 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGRG---DLAERQRMLARLARIL 170 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGSTT---THHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccch---hhHHHHHHHHHHHHHH
Confidence 55555 3588899998888887776554 456789999999999999 45554321 1123345688888889
Q ss_pred HHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 240 HYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 240 ~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.++|.+++++||++||+..+++++..|..+..+|+||..|+|++++||.++|.+
T Consensus 171 ~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~ 224 (256)
T PF08423_consen 171 KRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR 224 (256)
T ss_dssp HHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS
T ss_pred HHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC
Confidence 999999999999999999998776556557889999999999999999999854
No 10
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=4.8e-32 Score=252.64 Aligned_cols=193 Identities=25% Similarity=0.325 Sum_probs=156.2
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChH----HH
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LA 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~----~~ 165 (315)
.....++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++. .+++|+|||+|+++.+. .+
T Consensus 100 ~~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 100 QEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred cCcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 456789999999999999 99999999999999999999999999988763 23589999999998875 45
Q ss_pred HHcCCCC----CCeEEeCCCCHHHHHHHHHHH---HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHH
Q 021239 166 EAMGIDA----ENLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (315)
Q Consensus 166 ~~~g~~~----~~l~i~~~~~~e~~~~~i~~l---~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~ 238 (315)
++++++. +++.+.++.+.+++...+... +...++++|||||++++++ .++.+.. + ...+ .+.+.+.++.
T Consensus 179 ~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr-~~~~~~g-~-l~~r-~~~L~~~l~~ 254 (342)
T PLN03186 179 ERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYR-TEFSGRG-E-LSAR-QMHLGKFLRS 254 (342)
T ss_pred HHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHH-HHhcCCc-c-HHHH-HHHHHHHHHH
Confidence 6678776 578888888888776665543 5567899999999999984 4444321 1 1112 2347788889
Q ss_pred HHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 239 IHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 239 L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
|.++++++|++||+|||++.+++++..|+.+..+|+||++|+|++++||.|+|.+
T Consensus 255 L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~ 309 (342)
T PLN03186 255 LQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR 309 (342)
T ss_pred HHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC
Confidence 9999999999999999999888655566634459999999999999999999854
No 11
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=250.44 Aligned_cols=194 Identities=24% Similarity=0.347 Sum_probs=159.0
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChH----HH
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LA 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~----~~ 165 (315)
....+++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++. .+++|+||++|+++.+. .+
T Consensus 95 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred ccCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 457789999999999999 99999999999999999999999999988763 46799999999998764 46
Q ss_pred HHcCCCC----CCeEEeCCCCHHHHHHHHHHH---HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHH
Q 021239 166 EAMGIDA----ENLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (315)
Q Consensus 166 ~~~g~~~----~~l~i~~~~~~e~~~~~i~~l---~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~ 238 (315)
+++++++ +|+.+.++.+.+++.+.+..+ +...++++|||||+++++. .++.++. .. ..+.+.+.++++.
T Consensus 174 ~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r-~~~~~~~--~~-~~r~~~l~~~~~~ 249 (337)
T PTZ00035 174 ERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFR-VDYSGRG--EL-AERQQHLGKFLRA 249 (337)
T ss_pred HHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhh-hhccCcc--cH-HHHHHHHHHHHHH
Confidence 6678775 678888888888777766543 4467899999999999983 4444321 11 1223447788888
Q ss_pred HHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 239 IHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 239 L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
|.++++++|++||+|||++.++++..+|..++.+|+||+.|.|++++||.++|.+.
T Consensus 250 L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~ 305 (337)
T PTZ00035 250 LQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRG 305 (337)
T ss_pred HHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecCC
Confidence 99999999999999999999986545565588999999999999999999998643
No 12
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.97 E-value=2.4e-30 Score=239.87 Aligned_cols=193 Identities=25% Similarity=0.376 Sum_probs=153.9
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh---cC---CeEEEEecCCCCChH----HH
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK---LG---GYCAYLDVENALDPS----LA 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~---~g---~~v~~i~~E~~~~~~----~~ 165 (315)
.....++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++. .| ++|+||++|+.+.+. ++
T Consensus 73 ~~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred cccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 457789999999999999 99999999999999999999999999987653 22 589999999988764 46
Q ss_pred HHcCCCC----CCeEEeCCCCHHHHHHHHHHH---HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHH
Q 021239 166 EAMGIDA----ENLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (315)
Q Consensus 166 ~~~g~~~----~~l~i~~~~~~e~~~~~i~~l---~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~ 238 (315)
+++++++ +++.+.+..+.+++...+..+ +...++++|||||+++++. .++.+.. . ...+...+.+.+..
T Consensus 152 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r-~~~~~~~--~-~~~rq~~l~~~~~~ 227 (316)
T TIGR02239 152 ERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYR-TDFSGRG--E-LSARQMHLARFLRS 227 (316)
T ss_pred HHcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhh-hhcCCcc--h-HHHHHHHHHHHHHH
Confidence 6678775 467777777777766665544 4567899999999999983 4443321 1 11222336788888
Q ss_pred HHHHHhccCcEEEEEeccccccCCC-CCCCCCccccccccccccccceEEEEEecc
Q 021239 239 IHYSLCQSHTLIIFLNQVRFSAKSG-QGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 239 L~~~~~~~~i~VI~inq~~~~~~~~-~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
|.+++++++++||+|||++.++++. ..|.+++.+|+||+.|+|++++||.++|.+
T Consensus 228 L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~ 283 (316)
T TIGR02239 228 LQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGR 283 (316)
T ss_pred HHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecC
Confidence 9999999999999999999887653 235457899999999999999999999864
No 13
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.97 E-value=7.2e-30 Score=226.32 Aligned_cols=186 Identities=41% Similarity=0.589 Sum_probs=152.4
Q ss_pred cccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcC------CeEEEEecCCCCChHHHH----HcCC
Q 021239 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG------GYCAYLDVENALDPSLAE----AMGI 170 (315)
Q Consensus 101 i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g------~~v~~i~~E~~~~~~~~~----~~g~ 170 (315)
++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++..+ .+|+||++|+.++..+.. ..+.
T Consensus 1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 6899999999999 9999999999999999999999999999988777 899999999988775433 3343
Q ss_pred C----CCCeEEeCCCCHHHHHHHHHHHHH---cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHH
Q 021239 171 D----AENLLIAQPDSAENLLSVVDTLTK---SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (315)
Q Consensus 171 ~----~~~l~i~~~~~~e~~~~~i~~l~~---~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~ 243 (315)
+ .+++.+.++.+.+++.+.++.+.+ ..++++|||||++.+++ ....+.. ....+.+.+.+.++.|+.++
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~~~---~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIGRG---MLAERARLLSQALRKLLRLA 155 (226)
T ss_pred chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcCCc---hHHHHHHHHHHHHHHHHHHH
Confidence 3 567889999999988888887765 67899999999999984 2222110 01233455777888889999
Q ss_pred hccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 244 CQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 244 ~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
++++++||++||++..... .++ .+..|+||..|+|++++||.++|.+.
T Consensus 156 ~~~~~~vi~tnq~~~~~~~--~~~-~~~~p~~G~~~~~~~~~ri~l~~~~~ 203 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVDV--MFG-DPETPAGGNALAHASTTRLDLRKGRG 203 (226)
T ss_pred HHhCcEEEEEEEEeeeccc--ccC-CCccccCchhhhCcccEEEEEEecCC
Confidence 9999999999999988743 333 56789999999999999999998864
No 14
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.96 E-value=7.4e-29 Score=230.31 Aligned_cols=190 Identities=26% Similarity=0.378 Sum_probs=148.7
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChHH----H
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSL----A 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~~----~ 165 (315)
.....++||++.+|.+|+ ||++.|++++|+|+||+|||+||++++.+++. .+++|+||++|++++..+ +
T Consensus 72 ~s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 72 KTIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred ccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 456779999999999999 99999999999999999999999999999874 245999999999887754 4
Q ss_pred HHcCCCC----CCeEEeCCCCHHHH---HHHHHHHHHcC--CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHH
Q 021239 166 EAMGIDA----ENLLIAQPDSAENL---LSVVDTLTKSG--SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (315)
Q Consensus 166 ~~~g~~~----~~l~i~~~~~~e~~---~~~i~~l~~~~--~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l 236 (315)
+.+|++. +++.+..+...++. ++.+..++.+. ++++|||||+++++. .++.+.. + ...+.+.+.+.+
T Consensus 151 ~~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r-~e~~~~~-~--~~~r~~~l~~~~ 226 (310)
T TIGR02236 151 EARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFR-AEYVGRG-A--LAERQQKLNKHL 226 (310)
T ss_pred HHcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhh-HhhcCch-h--HHHHHHHHHHHH
Confidence 5567764 46777777655543 33344555544 489999999999983 4444321 1 112233466777
Q ss_pred HHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 237 RKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 237 ~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
..|..++++++++||+|||++.+.+ ..|+ ++.+|+||++|+|++++||.++|.+
T Consensus 227 ~~L~~~a~~~~~~v~~tnqv~~~~~--~~~~-~~~~~~~G~~~~h~~~~rl~l~~~~ 280 (310)
T TIGR02236 227 HDLLRLADLYNAAVVVTNQVMARPD--AFFG-DPTRPIGGHILGHAATFRVYLRKGK 280 (310)
T ss_pred HHHHHHHHHhCcEEEEeceeeecCc--cccC-ccccCCcchhhhhheeEEEEEEecC
Confidence 8888889999999999999998873 3565 7789999999999999999999853
No 15
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.96 E-value=1.7e-28 Score=217.69 Aligned_cols=180 Identities=28% Similarity=0.389 Sum_probs=142.2
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC-----CCC
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI-----DAE 173 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~-----~~~ 173 (315)
+.++||+++||++|+ ||+++|++++|+|+||+|||+||++++.+++..+++|+|+++| .+...+..++.- ..+
T Consensus 3 ~~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~ 80 (225)
T PRK09361 3 ERLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLS 80 (225)
T ss_pred ccccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhh
Confidence 469999999999999 9999999999999999999999999999999999999999999 555555444322 135
Q ss_pred CeEEeCCCCHHHHHHHHHHH---HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEE
Q 021239 174 NLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLI 250 (315)
Q Consensus 174 ~l~i~~~~~~e~~~~~i~~l---~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~V 250 (315)
++.+.++.+.+++.+.++.+ +. .++++|||||+++++. ..+.+.. ....+.+.+.+.+..|.++++++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~~---~~~~~~~~l~~~l~~L~~~a~~~~v~v 155 (225)
T PRK09361 81 NIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDEE---DNSKLNRELGRQLTHLLKLARKHDLAV 155 (225)
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCCc---cHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 67888888777665555443 33 6899999999999984 3322211 111334557777788888899999999
Q ss_pred EEEeccccccCCCCCCCCCccccccccccccccceEEEEEe
Q 021239 251 IFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMR 291 (315)
Q Consensus 251 I~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k 291 (315)
+++||+....+. ....++||..|.|+++.++.+++
T Consensus 156 i~tnq~~~~~~~------~~~~~~gg~~~~~~~d~ii~l~~ 190 (225)
T PRK09361 156 VITNQVYSDIDS------DGLRPLGGHTLEHWSKTILRLEK 190 (225)
T ss_pred EEEccceecCCC------CcccCCCcchhhhhccEEEEEEE
Confidence 999999877632 24578999999999999999998
No 16
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.96 E-value=1.4e-28 Score=229.14 Aligned_cols=190 Identities=26% Similarity=0.386 Sum_probs=149.9
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc------CCeEEEEecCCCCChH----HH
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDPS----LA 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~------g~~v~~i~~E~~~~~~----~~ 165 (315)
.....++||+++||.+|+ ||+++|.+++|+|+||+|||+||++++.+++.. +++|+||++|++++.. ++
T Consensus 79 ks~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 79 KNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred ccCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 356779999999999999 999999999999999999999999999988753 3599999999988764 45
Q ss_pred HHcCCCC----CCeEEeCCCCHHHH---HHHHHHHHHc-CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHH
Q 021239 166 EAMGIDA----ENLLIAQPDSAENL---LSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALR 237 (315)
Q Consensus 166 ~~~g~~~----~~l~i~~~~~~e~~---~~~i~~l~~~-~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~ 237 (315)
+++|+++ +++++.++.+.++. ++.+..++.+ .++++|||||+++++. .++.++. ... .+.+.+.+.+.
T Consensus 158 ~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~-~~~~~~~--~~~-~r~~~l~~~~~ 233 (317)
T PRK04301 158 EALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFR-AEYVGRG--NLA-ERQQKLNKHLH 233 (317)
T ss_pred HHcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhh-hhccCCc--cHH-HHHHHHHHHHH
Confidence 5678775 46777777665544 3444555555 6899999999999983 4443321 111 12233666777
Q ss_pred HHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 238 KIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 238 ~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.|.+++++++++||+|||+..+. +..|+ ++..|+||..|.|++++||.++|.+
T Consensus 234 ~L~~la~~~~vavl~tnqv~~~~--~~~~~-~~~~~~~G~~~~~~~~~rl~l~k~~ 286 (317)
T PRK04301 234 DLLRLADLYNAAVVVTNQVMARP--DAFFG-DPTQPIGGHILGHTATFRIYLRKSK 286 (317)
T ss_pred HHHHHHHHhCCEEEEeceEEecc--ccccC-ccccCCcchHhHhheeEEEEEEecC
Confidence 88888899999999999999876 33565 7889999999999999999999863
No 17
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.96 E-value=1.6e-28 Score=218.86 Aligned_cols=188 Identities=28% Similarity=0.434 Sum_probs=145.7
Q ss_pred cccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc------CCeEEEEecCCCCChHH----HHHcCC
Q 021239 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDPSL----AEAMGI 170 (315)
Q Consensus 101 i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~------g~~v~~i~~E~~~~~~~----~~~~g~ 170 (315)
+|||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++.. +++|+||++|+.+...+ ++.+++
T Consensus 1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence 5899999999999 999999999999999999999999999887654 38999999999877643 444555
Q ss_pred CC----CCeEEeCCCCHHHHHHH---HHHHHHcC-CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHH
Q 021239 171 DA----ENLLIAQPDSAENLLSV---VDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (315)
Q Consensus 171 ~~----~~l~i~~~~~~e~~~~~---i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~ 242 (315)
++ +++++.++.+.+++... +...+.+. ++++|||||++.++. ..+.+.. ......+.+.+.+..|.++
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~~~---~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDGRG---ELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcCCc---cHHHHHHHHHHHHHHHHHH
Confidence 43 46788887777665544 44445566 899999999999873 2332221 0123334577788888888
Q ss_pred HhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 243 LCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 243 ~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
+++++++||++||+....+++..+.....+|++|..|.|++++|+.++|.+
T Consensus 156 a~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~ 206 (235)
T cd01123 156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR 206 (235)
T ss_pred HHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC
Confidence 899999999999999876543222225668999999999999999999876
No 18
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.96 E-value=2.1e-28 Score=216.00 Aligned_cols=181 Identities=25% Similarity=0.406 Sum_probs=140.8
Q ss_pred cccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC----CCCCeE
Q 021239 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENLL 176 (315)
Q Consensus 101 i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~----~~~~l~ 176 (315)
++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++..|++|+|+++|..+.....+..+. ...++.
T Consensus 1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence 6899999999999 99999999999999999999999999999999999999999998876422222221 235777
Q ss_pred EeCCCCHHHHHHHHH---HHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 177 IAQPDSAENLLSVVD---TLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 177 i~~~~~~e~~~~~i~---~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
+.++.+.+++...+. ..++ .++++|||||++.++. .+..+.. ....+.+.+.+.+..|..++++++++||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~-~~~~~~~---~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 154 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYR-LELGDDD---TTIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhh-HHhcCcc---chHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 877777666554333 3333 3589999999999973 3332221 112344457777888888899999999999
Q ss_pred eccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 254 NQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 254 nq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
||+.....+ ...+|.||..|+|++|.+|.|++.+
T Consensus 155 ~q~~~~~~~------~~~~p~~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 155 NQVYSDVGS------GSVRPLGGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred cCCEEcCCC------CcccccCCcchhcceeEEEEEEEcC
Confidence 999877632 3567899999999999999999875
No 19
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.95 E-value=2.9e-29 Score=218.05 Aligned_cols=193 Identities=28% Similarity=0.419 Sum_probs=163.4
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChHH----H
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSL----A 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~~----~ 165 (315)
.....|+||+.+||.+|| ||++.-++++++|++|+|||+++.+++..++. .+++++|||+|.++.++| |
T Consensus 92 ~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434|consen 92 KTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred hccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence 457789999999999999 99999999999999999999999999987764 368999999999998865 5
Q ss_pred HHcCCCC----CCeEEeCCCCHHHHHHHHHHH---H-HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHH
Q 021239 166 EAMGIDA----ENLLIAQPDSAENLLSVVDTL---T-KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALR 237 (315)
Q Consensus 166 ~~~g~~~----~~l~i~~~~~~e~~~~~i~~l---~-~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~ 237 (315)
+++++++ +|+.+.+..+.++..+.+..+ + +.+..++|||||+.+++ +.+++++. .+..+| +.+.+.+.
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~grg--eLseRq-qkLn~ml~ 246 (335)
T KOG1434|consen 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGRG--ELSERQ-QKLNQMLQ 246 (335)
T ss_pred HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eecccccc--cHHHHH-HHHHHHHH
Confidence 6667765 488888888888776665543 3 34689999999999999 57777653 233343 44888899
Q ss_pred HHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 238 KIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 238 ~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
++.+++++++++|+++||+..+++.+..|...+.+|+||.+|+|++.+|+.+++.+
T Consensus 247 kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgr 302 (335)
T KOG1434|consen 247 KLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGR 302 (335)
T ss_pred HHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCC
Confidence 99999999999999999999999887777777899999999999999999999987
No 20
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-26 Score=215.04 Aligned_cols=173 Identities=27% Similarity=0.392 Sum_probs=155.6
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
.+..+++||+.+||+.|| ||+-+|++++|.|+||.|||||++|++...+.++ +|+|++.|++..+ .|++++|++.+
T Consensus 70 ~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~ 147 (456)
T COG1066 70 EEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTN 147 (456)
T ss_pred eecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCcc
Confidence 567899999999999999 9999999999999999999999999999999888 9999999999998 68999999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 174 ~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
++++....+.+++...+.+ .+|+++||||++.++ ..+.++.+|.. .|.|+.+..|.+++ ++.|++++++
T Consensus 148 ~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~-s~~~~SapGsV---sQVRe~t~~L~~~A---K~~~i~~fiV 216 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLY-SEEITSAPGSV---SQVREVAAELMRLA---KTKNIAIFIV 216 (456)
T ss_pred ceEEehhcCHHHHHHHHHh----cCCCEEEEeccceee-cccccCCCCcH---HHHHHHHHHHHHHH---HHcCCeEEEE
Confidence 9999999999988887766 589999999999999 46777777665 88888877776665 9999999999
Q ss_pred eccccccCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 254 NQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 254 nq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
-|++++- ..+|.+.+.|.+|+.|+++..
T Consensus 217 GHVTKeG-----------~IAGPrvLEHmVDtVlyFEGd 244 (456)
T COG1066 217 GHVTKEG-----------AIAGPRVLEHMVDTVLYFEGD 244 (456)
T ss_pred EEEcccc-----------cccCchheeeeeeEEEEEecc
Confidence 9998664 468999999999999999875
No 21
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.94 E-value=3e-26 Score=200.85 Aligned_cols=171 Identities=23% Similarity=0.362 Sum_probs=133.3
Q ss_pred HHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHc-----CCCCCCeEEeCCCC
Q 021239 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAM-----GIDAENLLIAQPDS 182 (315)
Q Consensus 108 LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~-----g~~~~~l~i~~~~~ 182 (315)
||.+|+ ||+++|++++|+|+||+|||+||++++.+.+..|++|+|+++|+ +...+..++ +...+++.+.++.+
T Consensus 1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence 699999 99999999999999999999999999999998999999999997 555443332 22246788888877
Q ss_pred HHHH---HHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 183 AENL---LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 183 ~e~~---~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
.+++ +..+...+...++++|||||+++++. .+..++. ..+.+.+.+.+..|.+++++++++++++||+...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~~-----~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDDR-----ISRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCcc-----HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 6665 44444555666899999999999873 3322221 1233345666777888889999999999999876
Q ss_pred cCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 260 AKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 260 ~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
.+. ....|+||..|.|+++.++.+++.
T Consensus 153 ~~~------~~~~~~gg~~~~~~~d~vi~l~~~ 179 (209)
T TIGR02237 153 VNN------GTLRPLGGHLLEHWSKVILRLEKF 179 (209)
T ss_pred cCC------CCCcCCCcchhheeeeEEEEEEec
Confidence 632 345789999999999999999976
No 22
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.94 E-value=1.9e-25 Score=211.01 Aligned_cols=176 Identities=25% Similarity=0.359 Sum_probs=143.8
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
...++++||+++||++|| ||+++|++++|+|+||+|||||+++++.+.++.+++|+|+++|++..+ .+++++|++.+
T Consensus 59 ~~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 59 EEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTE 137 (372)
T ss_pred cccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcc
Confidence 466789999999999999 999999999999999999999999999999988899999999998876 56888999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 174 ~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
++++....+.+++.+.+. ..++++|||||++.++. .+.++.++. ..|.+ +.+..|.+++++++++++++
T Consensus 138 ~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~---~~qvr---~~~~~L~~lak~~~itvilv 206 (372)
T cd01121 138 NLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYS-SELTSAPGS---VSQVR---ECTAELMRFAKERNIPIFIV 206 (372)
T ss_pred cEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhc-cccccCCCC---HHHHH---HHHHHHHHHHHHcCCeEEEE
Confidence 999888777777666553 45899999999999973 333333322 14444 34555666779999999999
Q ss_pred eccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 254 NQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 254 nq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
+|+.+.. ..+|...+.|.+|++|.+++.+.
T Consensus 207 ghvtk~g-----------~~aG~~~leh~vD~Vi~le~~~~ 236 (372)
T cd01121 207 GHVTKEG-----------SIAGPKVLEHMVDTVLYFEGDRH 236 (372)
T ss_pred eeccCCC-----------cccCcccchhhceEEEEEEcCCC
Confidence 9997543 24667899999999999987653
No 23
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.94 E-value=2.1e-25 Score=201.93 Aligned_cols=172 Identities=22% Similarity=0.324 Sum_probs=135.0
Q ss_pred ccccCcHHHHHhh--------------cCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---
Q 021239 100 VISTGSLKLDLAL--------------GIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--- 162 (315)
Q Consensus 100 ~i~TG~~~LD~~l--------------~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--- 162 (315)
+++||+++||++| + ||+|+|++++|+|+||+|||+||+|++.+.+++|++|+|+++|++...
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~ 81 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYT 81 (259)
T ss_pred CccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHH
Confidence 5899999999999 5 899999999999999999999999999999889999999999986642
Q ss_pred ---HHHHHcCCCCC----CeEEeCCCC-------HHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHH
Q 021239 163 ---SLAEAMGIDAE----NLLIAQPDS-------AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (315)
Q Consensus 163 ---~~~~~~g~~~~----~l~i~~~~~-------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q 228 (315)
.++..+|++.+ ++++.++.+ .+++...+...+++.++++|||||++.++.... .+
T Consensus 82 ~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~-----------~~ 150 (259)
T TIGR03878 82 SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKE-----------MM 150 (259)
T ss_pred HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccch-----------HH
Confidence 24567888753 566665543 456677777788888999999999998863110 12
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 229 ~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
..+.+.+|..++++.++|+++++|....... + ...+.++..+.|.+|.+|.|...
T Consensus 151 ---~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~---~---~~~~~~~~~~~~l~D~vI~L~~~ 205 (259)
T TIGR03878 151 ---AREIVRQLFNFMKKWYQTALFVSQKRSGHEE---L---SAEAAGGYAVSHIVDGTIVLAKQ 205 (259)
T ss_pred ---HHHHHHHHHHHHHHcCCeEEEEeccccCccc---c---cccccCCcceeEeeccEEEEeee
Confidence 2355666777779999999999998753311 1 11467777899999999999853
No 24
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.93 E-value=4.8e-25 Score=213.42 Aligned_cols=173 Identities=26% Similarity=0.377 Sum_probs=141.5
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
...++++||+++||++|| ||+++|++++|+|+||+|||||+++++.+.++.+++|+|+++|++..+ .+++++|++.+
T Consensus 57 ~~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 57 EEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSD 135 (446)
T ss_pred ccCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChh
Confidence 456789999999999999 999999999999999999999999999999888999999999999887 46889999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 174 ~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
++.+....+.+++.+.++ +.++++|||||++.++. .++++.++.. .|.+ +.+..|.+++++++++++++
T Consensus 136 ~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~qvr---~~~~~L~~~ak~~~itvilv 204 (446)
T PRK11823 136 NLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYS-PELESAPGSV---SQVR---ECAAELMRLAKQRGIAVFLV 204 (446)
T ss_pred cEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhcc-ccccCCCCCH---HHHH---HHHHHHHHHHHHcCCEEEEE
Confidence 988887777776666553 45899999999999983 4444333322 4444 34555666779999999999
Q ss_pred eccccccCCCCCCCCCccccccccccccccceEEEEEe
Q 021239 254 NQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMR 291 (315)
Q Consensus 254 nq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k 291 (315)
+|+.... ..+|...|.|.+|.++.+++
T Consensus 205 ~hvtk~~-----------~~ag~~~lehlvD~Vi~le~ 231 (446)
T PRK11823 205 GHVTKEG-----------AIAGPRVLEHMVDTVLYFEG 231 (446)
T ss_pred eeccCCC-----------CcCCcchhhhhCeEEEEEEc
Confidence 9997542 13556789999999999985
No 25
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.93 E-value=5.3e-25 Score=196.92 Aligned_cols=169 Identities=21% Similarity=0.301 Sum_probs=132.5
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC---
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE--- 173 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~--- 173 (315)
++++||+++||++|+ ||+++|++++|+|+||+|||+|+++++.+.+++|++|+|+++|+++.+ .+++.+|++.+
T Consensus 1 ~ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~ 79 (237)
T TIGR03877 1 KRVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYE 79 (237)
T ss_pred CccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHh
Confidence 358999999999999 999999999999999999999999999998889999999999998876 45777888753
Q ss_pred ---CeEEeC-------------------CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHH
Q 021239 174 ---NLLIAQ-------------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI 231 (315)
Q Consensus 174 ---~l~i~~-------------------~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~ 231 (315)
++.+.+ +.+.+++.+.+.+.++..++++|||||++.++... + ...+
T Consensus 80 ~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~-----~------~~~r- 147 (237)
T TIGR03877 80 EEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK-----P------AMAR- 147 (237)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC-----h------HHHH-
Confidence 333332 34567788888888888899999999999986311 0 1122
Q ss_pred HHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 232 MTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 232 i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
+.+..|.+.++++|+|+++++|..... .+.++..+.|.+|..|.|+...
T Consensus 148 --~~l~~l~~~lk~~~~t~llt~~~~~~~-----------~~~~~~~~~~~~D~vI~L~~~~ 196 (237)
T TIGR03877 148 --SIVMQLKRVLSGLGCTSIFVSQVSVGE-----------RGFGGPGVEHAVDGIIRLDLDE 196 (237)
T ss_pred --HHHHHHHHHHHhCCCEEEEEECccccc-----------ccccccceEEEEeEEEEEEEEe
Confidence 456677777799999999999986432 1122345678899999887643
No 26
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.93 E-value=4.4e-25 Score=213.81 Aligned_cols=175 Identities=23% Similarity=0.286 Sum_probs=142.1
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
.+.++++||+++||++|| ||+++|++++|+|+||+|||||+++++.+.++.+++|+|+++|++..+ .+++++|++.+
T Consensus 71 ~~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 71 EEVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP 149 (454)
T ss_pred cccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH
Confidence 456789999999999999 999999999999999999999999999999988899999999998876 46788999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 174 ~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
++++....+.+++.+.+ ++.++++|||||++.++. .+..+.++.. .|.+ +.+..|.++++++|+|++++
T Consensus 150 ~l~~~~e~~~~~I~~~i----~~~~~~~vVIDSIq~l~~-~~~~~~~g~~---~q~r---~~~~~L~~~ak~~giTvllt 218 (454)
T TIGR00416 150 NLYVLSETNWEQICANI----EEENPQACVIDSIQTLYS-PDISSAPGSV---SQVR---ECTAELMRLAKTRGIAIFIV 218 (454)
T ss_pred HeEEcCCCCHHHHHHHH----HhcCCcEEEEecchhhcc-cccccCCCCH---HHHH---HHHHHHHHHHHHhCCEEEEE
Confidence 99988887776666554 446899999999999873 3333333322 4444 34555666779999999999
Q ss_pred eccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 254 NQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 254 nq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
+|+.... ..+|...+.|.+|.+|.+++.+
T Consensus 219 ~hvtkeg-----------~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 219 GHVTKEG-----------SIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred eccccCC-----------ccCCcccEeeeceEEEEEeccC
Confidence 9997532 2356678999999999998743
No 27
>PRK04328 hypothetical protein; Provisional
Probab=99.92 E-value=3.1e-24 Score=193.25 Aligned_cols=168 Identities=22% Similarity=0.320 Sum_probs=132.2
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC---
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE--- 173 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~--- 173 (315)
++++||+++||++|+ ||+|+|++++|+|+||+|||+|+++++.+.+++|++|+|+++|+++.. ..++++|++.+
T Consensus 3 ~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~ 81 (249)
T PRK04328 3 KRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE 81 (249)
T ss_pred ceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHh
Confidence 569999999999999 999999999999999999999999999999999999999999998887 45778888653
Q ss_pred ---CeEEeC-------------------CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHH
Q 021239 174 ---NLLIAQ-------------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI 231 (315)
Q Consensus 174 ---~l~i~~-------------------~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~ 231 (315)
++.+.+ +.+.+++.+.+.+.++..+++++||||++.++.. . + ...+
T Consensus 82 ~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~-~----~------~~~r- 149 (249)
T PRK04328 82 EEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT-K----P------AMAR- 149 (249)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC-C----h------HHHH-
Confidence 233332 2345677788888888889999999999988631 1 0 1122
Q ss_pred HHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 232 MTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 232 i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
+.+..|.+.++++|+|+++++|..... .+.++..+.|.+|..|.|+..
T Consensus 150 --~~~~~l~~~lk~~g~t~llt~e~~~~~-----------~~~~~~~~~~~~D~vI~L~~~ 197 (249)
T PRK04328 150 --SIVMQLKRVLSGLGCTAIFVSQVSVGE-----------RGFGGPGVEHAVDGIIRLDLD 197 (249)
T ss_pred --HHHHHHHHHHHhCCCEEEEEECccccc-----------cccCCCCcEEEEEEEEEEEEE
Confidence 445667777799999999999986421 123345567888999988764
No 28
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.92 E-value=5.8e-25 Score=215.42 Aligned_cols=173 Identities=21% Similarity=0.183 Sum_probs=136.8
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC-
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN- 174 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~- 174 (315)
..+++||+++||++|| ||+++|++++|.||||+|||+|++|++.+.+++|++|+|+++|++..+ .+++++|++.++
T Consensus 242 ~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~ 320 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEM 320 (484)
T ss_pred ccccCCChHhHHHHhc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHH
Confidence 5579999999999999 999999999999999999999999999999999999999999999988 578899998754
Q ss_pred -----eEEeCC----CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhc
Q 021239 175 -----LLIAQP----DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ 245 (315)
Q Consensus 175 -----l~i~~~----~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~ 245 (315)
+.+.+. ...+++++.+.+.++..++++|||||++.+.. .+.. .+.+ ..+..|.+++++
T Consensus 321 ~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~--~~~~--------~~~r---~~~~~l~~~lk~ 387 (484)
T TIGR02655 321 EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR--GVSN--------NAFR---QFVIGVTGYAKQ 387 (484)
T ss_pred hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH--hcCH--------HHHH---HHHHHHHHHHhh
Confidence 555442 24578888888888888999999999999873 1211 2222 445667778899
Q ss_pred cCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 246 SHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 246 ~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.|+|+++++........ + +......+|.+|..|.|+-.+
T Consensus 388 ~~it~~~t~~~~~~~~~---~------~~~~~~~s~l~D~ii~l~~~e 426 (484)
T TIGR02655 388 EEITGFFTNTSDQFMGS---H------SITDSHISTITDTILMLQYVE 426 (484)
T ss_pred CCCeEEEeecccccccC---C------ccCCCCeeEeeeEEEEEEEEe
Confidence 99999999887643311 1 111223577888888876544
No 29
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.91 E-value=9.6e-24 Score=186.14 Aligned_cols=192 Identities=24% Similarity=0.343 Sum_probs=147.2
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChHHHHHcC-
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSLAEAMG- 169 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~~~~~~g- 169 (315)
..+.++||...||+.|+ ||++.+.+++|+|++|+|||+|++|++...+- -|+.++||.+|.+++..|..++.
T Consensus 80 ~~~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~ 158 (351)
T KOG1564|consen 80 NRSKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSH 158 (351)
T ss_pred CchhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHH
Confidence 34679999999999999 99999999999999999999999999988773 36799999999999986633321
Q ss_pred ------------C----CCCCeEEeCCCCHHHHHHHHHHH----HHcCCccEEeehhHhhhccccccCCCccCCChHHHH
Q 021239 170 ------------I----DAENLLIAQPDSAENLLSVVDTL----TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQS 229 (315)
Q Consensus 170 ------------~----~~~~l~i~~~~~~e~~~~~i~~l----~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~ 229 (315)
. .-+++++....+++.+++.+... ..+.+.++|||||+++.+ +.+++..+.+.. ..+
T Consensus 159 ~~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~--~r~ 235 (351)
T KOG1564|consen 159 TLPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLK--KRA 235 (351)
T ss_pred hcccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhh--hHH
Confidence 1 11247888888888888887764 356789999999999999 677775432211 223
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCC-C----C-------CCccccccccccccccceEEEEEec
Q 021239 230 RIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQG-L----G-------RMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 230 r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~-~----~-------~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
+.+.+.-.+|..++.+++++||++||+.+....+-. + + .-...|+.|..|++.+++||.+.|.
T Consensus 236 ~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~ 310 (351)
T KOG1564|consen 236 RHLFRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRS 310 (351)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeec
Confidence 334455555666679999999999999988432110 1 0 1126799999999999999999994
No 30
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.90 E-value=3.1e-23 Score=184.07 Aligned_cols=167 Identities=29% Similarity=0.394 Sum_probs=126.7
Q ss_pred cccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHHcCCCCC----
Q 021239 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAMGIDAE---- 173 (315)
Q Consensus 101 i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~~g~~~~---- 173 (315)
|+||+++||++|+ ||+|+|++++|.|+||+|||+|++|++.+.+++ |++|+|+++|+++.. ..++.+|++.+
T Consensus 1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 6899999999999 999999999999999999999999999999999 999999999999876 45777888754
Q ss_pred --CeEEeC---------CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHH
Q 021239 174 --NLLIAQ---------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (315)
Q Consensus 174 --~l~i~~---------~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~ 242 (315)
++.+.+ +.+.+++...+.+.++..++++|||||++.+.. .. +. . .+...++.+...
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~--~~-------~---~~r~~l~~l~~~ 146 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YD--DP-------E---ELRRFLRALIKF 146 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SS--SG-------G---GHHHHHHHHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cC--CH-------H---HHHHHHHHHHHH
Confidence 355443 346788888888888888889999999999931 11 11 1 133567777777
Q ss_pred HhccCcEEEEEeccccccCCCCCCCCCcccccccccccc-ccceEEEEEec
Q 021239 243 LCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKF-YAALRLRMMRT 292 (315)
Q Consensus 243 ~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~-~~~~rl~l~k~ 292 (315)
+++.|++++++.|..... .+.....+.+ .+|..|.++..
T Consensus 147 l~~~~~t~llt~~~~~~~-----------~~~~~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 147 LKSRGVTTLLTSEMPSGS-----------EDDGTFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHTTEEEEEEEEESSSS-----------SSSSSTSHHHHHSSEEEEEEEE
T ss_pred HHHCCCEEEEEEccccCc-----------ccccccchhhhcccEEEEEEEE
Confidence 899999999999975432 1234455665 78888887764
No 31
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.90 E-value=4.1e-22 Score=192.55 Aligned_cols=186 Identities=21% Similarity=0.252 Sum_probs=141.0
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecCCCCChHH----HHHcCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSL----AEAMGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E~~~~~~~----~~~~g~~ 171 (315)
...+++||++.||++++ |+.+|++++|+|+||+|||+|+++++.+++ ..|.+|+||++|++..+.. +...|++
T Consensus 173 ~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGIN 250 (421)
T ss_pred CCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35789999999999997 999999999999999999999999998887 6789999999999887632 2223443
Q ss_pred CC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccCC
Q 021239 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 172 ~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
.. ++++.+. .+.+++...++++.... ++++||||+++.+... .+ .
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~---~~---~- 323 (421)
T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT---RG---R- 323 (421)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC---CC---C-
Confidence 21 3455544 46788888888887655 7999999999988631 11 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++..+.+.+|+.+.+.|...
T Consensus 324 ---~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~ 391 (421)
T TIGR03600 324 ---DRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGY 391 (421)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccc
Confidence 11234677778888888999999999999998774321111011123577889999999999999865
No 32
>PRK06321 replicative DNA helicase; Provisional
Probab=99.89 E-value=2.2e-21 Score=188.70 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=141.2
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHH----cCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA----MGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~----~g~~ 171 (315)
...+++||++.||++++ |+++|++++|+|+||+|||+|+++++.+++. .|.+|+||++||+..+...+- .+++
T Consensus 205 ~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~ 282 (472)
T PRK06321 205 MISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVE 282 (472)
T ss_pred CCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCC
Confidence 35689999999999997 9999999999999999999999999999874 588999999999987632221 1222
Q ss_pred CC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.. ++++.+. .+.+++...++++...+++++||||+|+.+........ .
T Consensus 283 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~--~--- 357 (472)
T PRK06321 283 SKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRN--S--- 357 (472)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCC--c---
Confidence 11 3344432 36788999999888888899999999998752111110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
..+..++..+.+.|+.+|++++|+||+++|+++.+.......+.-.--.++..+...+|+.+.+.|.+.
T Consensus 358 -~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~ 426 (472)
T PRK06321 358 -ESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREY 426 (472)
T ss_pred -chHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhh
Confidence 123345788888899999999999999999998875321100000112467789999999999998654
No 33
>PRK08760 replicative DNA helicase; Provisional
Probab=99.89 E-value=1.5e-21 Score=190.37 Aligned_cols=187 Identities=19% Similarity=0.168 Sum_probs=139.5
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHH--c--CCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA--M--GID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~--~--g~~ 171 (315)
...+++||+++||.+++ |+++|++++|.|+||+|||+|++++|.+++. .|.+|+||++||+..+...+- . +++
T Consensus 208 ~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~ 285 (476)
T PRK08760 208 NITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRIN 285 (476)
T ss_pred CCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCc
Confidence 45789999999999986 8999999999999999999999999999875 488999999999987632221 1 122
Q ss_pred C-------------------------CCeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 A-------------------------ENLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~-------------------------~~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
. .++++.+. .+++++...++++...+++++||||+++.+..... .+
T Consensus 286 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~--~~----- 358 (476)
T PRK08760 286 AQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN--SE----- 358 (476)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCC--Cc-----
Confidence 1 13455443 35789999999988888899999999997752111 00
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++..+.+.+|+++.+.|...
T Consensus 359 --~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~ 426 (476)
T PRK08760 359 --NRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDY 426 (476)
T ss_pred --ccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhh
Confidence 12234677778888888999999999999998874321110000112467889999999999998653
No 34
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.89 E-value=9e-23 Score=201.54 Aligned_cols=173 Identities=22% Similarity=0.234 Sum_probs=135.2
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN 174 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~ 174 (315)
..+.++||+++||.+|+ ||+++|++++|.|+||+|||+|+.+++.+.+..|++|+|+++|+++++ ..++.+|++.++
T Consensus 251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~ 329 (509)
T PRK09302 251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK 329 (509)
T ss_pred ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence 35689999999999999 999999999999999999999999999999999999999999998776 467788987653
Q ss_pred ------eEEeC----CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHh
Q 021239 175 ------LLIAQ----PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (315)
Q Consensus 175 ------l~i~~----~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~ 244 (315)
+.+.. ....++++..+.+.+++.++++|||||++.+..... ...+.+.++.|.+.++
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~-------------~~~~~~~l~~l~~~~k 396 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGS-------------LNEFRQFVIRLTDYLK 396 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCC-------------HHHHHHHHHHHHHHHH
Confidence 22222 124567788888888888999999999999873111 1124566777888889
Q ss_pred ccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 245 QSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 245 ~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
++|+++++++|....... .+... ..+.|.+|..|.|+..
T Consensus 397 ~~~~t~l~t~~~~~~~g~------~~~~~---~~~~~l~D~vI~L~~~ 435 (509)
T PRK09302 397 SEEITGLFTNLTPDFMGS------HSITE---SHISSLTDTWILLQYV 435 (509)
T ss_pred hCCCeEEEEeccccccCC------CCCCc---CceEEeeeEEEEEEEe
Confidence 999999999998654311 11111 2367888888888864
No 35
>PRK09165 replicative DNA helicase; Provisional
Probab=99.89 E-value=1.5e-21 Score=191.36 Aligned_cols=188 Identities=20% Similarity=0.240 Sum_probs=140.7
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc---------------CCeEEEEecCCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL---------------GGYCAYLDVENALD 161 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~---------------g~~v~~i~~E~~~~ 161 (315)
...+++||+++||.++| |+.+|++++|.|+||+|||+|+++++.+++.. |.+|+||++||+..
T Consensus 196 ~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 196 HLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 45789999999999996 99999999999999999999999999988753 68999999999998
Q ss_pred hHHH----HHcCCCCC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhh
Q 021239 162 PSLA----EAMGIDAE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 162 ~~~~----~~~g~~~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l 210 (315)
+... ...+++.. ++++.+. .+.+++...++++...+++++||||+++.+
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli 353 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLI 353 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence 7322 22344321 2444443 367899999998888889999999999987
Q ss_pred ccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEE
Q 021239 211 IPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMM 290 (315)
Q Consensus 211 ~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~ 290 (315)
..... . ... ....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++..+...+|+.+.+.
T Consensus 354 ~~~~~-~--~~~----~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 354 RGSSK-R--SSD----NRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred cCCCC-C--CCC----chHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEe
Confidence 63111 0 001 1223477778888888899999999999999987432111001112356788999999999999
Q ss_pred ecc
Q 021239 291 RTR 293 (315)
Q Consensus 291 k~~ 293 (315)
|..
T Consensus 427 R~~ 429 (497)
T PRK09165 427 REE 429 (497)
T ss_pred ehh
Confidence 864
No 36
>PRK05748 replicative DNA helicase; Provisional
Probab=99.88 E-value=2.7e-21 Score=188.09 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=139.5
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHH---c-CCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA---M-GID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~---~-g~~ 171 (315)
...+++||++.||.+++ |+++|++++|.|+||+|||+|+++++.+++. .|.+|+||++||+..+...+. . +++
T Consensus 182 ~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~ 259 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNID 259 (448)
T ss_pred CCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999999874 588999999999988732221 1 221
Q ss_pred CC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccCC
Q 021239 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 172 ~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
.. ++++.+. .+.+++...++++.... ++++||||+++.+... . ..++
T Consensus 260 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~-~---~~~~- 334 (448)
T PRK05748 260 AQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGS-G---RSGE- 334 (448)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCC-C---CCCc-
Confidence 11 3445433 36788989998888776 7999999999988521 1 1001
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++..+.+.+|..+.+.|...
T Consensus 335 ---~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~ 402 (448)
T PRK05748 335 ---NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDY 402 (448)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccc
Confidence 12335778888888889999999999999998763321100000112466788999999999998764
No 37
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.88 E-value=4.9e-21 Score=185.77 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=139.0
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHH--H--HHcCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSL--A--EAMGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~--~--~~~g~~ 171 (315)
...+++||++.||.+++ |+++|++++|.|+||+|||+|+++++.+++. .|.+|+||++|++..+.. + ...+++
T Consensus 174 ~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~ 251 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVD 251 (434)
T ss_pred CCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999999875 588999999999887632 1 112222
Q ss_pred CC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.. ++++.+. .+.+++...++++...+++++||||+++.+..... .+
T Consensus 252 ~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~--~~----- 324 (434)
T TIGR00665 252 SQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR--SE----- 324 (434)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC--CC-----
Confidence 11 2444332 36788999999888888899999999998852111 10
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+...-..++..+.+.+|..+.+.|...
T Consensus 325 --~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~ 392 (434)
T TIGR00665 325 --NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEY 392 (434)
T ss_pred --CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccc
Confidence 12234667778888888999999999999998763311100011123466788999999999998753
No 38
>PRK05595 replicative DNA helicase; Provisional
Probab=99.88 E-value=4.3e-21 Score=186.43 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=139.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecCCCCChHH----HHHcCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSL----AEAMGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E~~~~~~~----~~~~g~~ 171 (315)
...+++||++.||.+++ |+.+|++++|.|+||+|||+|+++++.+++ ..|.+|+||++||+..+.. +...+++
T Consensus 180 ~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 180 ETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVD 257 (444)
T ss_pred CCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 35689999999999985 999999999999999999999999998765 5689999999999887632 2222332
Q ss_pred CC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.. ++++.+. .+.+++...++++....++++||||+++.+..... . +
T Consensus 258 ~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~--~---~-- 330 (444)
T PRK05595 258 MLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKG--S---E-- 330 (444)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCC--C---c--
Confidence 11 3445443 35778888888888778899999999998752111 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++..+.+.+|+.+.+.|...
T Consensus 331 --~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~ 398 (444)
T PRK05595 331 --SRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEY 398 (444)
T ss_pred --cHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccc
Confidence 12234677788888888999999999999998874321111011123467789999999999998764
No 39
>PRK08006 replicative DNA helicase; Provisional
Probab=99.88 E-value=5.7e-21 Score=185.85 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=139.4
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHHc----CCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEAM----GID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~~----g~~ 171 (315)
...+++||+++||.+++ |+.+|++++|+|+||+|||+|++++|.+++. .|.+|+||++||+..+...+-+ +++
T Consensus 203 ~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~ 280 (471)
T PRK08006 203 GVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVD 280 (471)
T ss_pred CCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCC
Confidence 35789999999999986 9999999999999999999999999999874 5889999999999876322111 111
Q ss_pred --------------------------CCCeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccC
Q 021239 172 --------------------------AENLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPING 222 (315)
Q Consensus 172 --------------------------~~~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~ 222 (315)
-.++++.+. .+..++...++++..++ ++++||||+|+.+..... . +
T Consensus 281 ~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~--~---~ 355 (471)
T PRK08006 281 QTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL--S---D 355 (471)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCC--C---C
Confidence 124455543 36788988888887665 699999999998752111 1 0
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 223 ~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.+..++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++-.+...+|..+.+.|...
T Consensus 356 ----~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~ 423 (471)
T PRK08006 356 ----NRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEV 423 (471)
T ss_pred ----CcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecccc
Confidence 11234777888888888999999999999999875421110011123467789999999999998754
No 40
>PRK08506 replicative DNA helicase; Provisional
Probab=99.88 E-value=3.2e-21 Score=188.19 Aligned_cols=187 Identities=19% Similarity=0.195 Sum_probs=139.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHH----HcCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAE----AMGIDA 172 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~----~~g~~~ 172 (315)
...+++||++.||.+++ |+++|++++|.|+||+|||+|+++++.+++..|.+|+||++||+..+...+ ..+++.
T Consensus 171 ~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~ 248 (472)
T PRK08506 171 DIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL 248 (472)
T ss_pred CCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 35689999999999985 999999999999999999999999999998889999999999998763221 123321
Q ss_pred -------------------------CCeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccCCC
Q 021239 173 -------------------------ENLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 173 -------------------------~~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.++++.+. .+.+++...++++.... ++++||||+|+.+.......
T Consensus 249 ~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~------- 321 (472)
T PRK08506 249 QNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFK------- 321 (472)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCC-------
Confidence 13555543 36888999998887653 68999999999775211100
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.+..++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++.++.+.+|+++.+.|...
T Consensus 322 --~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~ 389 (472)
T PRK08506 322 --DRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDV 389 (472)
T ss_pred --CHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccc
Confidence 12234677778888888999999999999998874321111011113467789999999999999753
No 41
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.88 E-value=1.6e-21 Score=173.41 Aligned_cols=168 Identities=26% Similarity=0.320 Sum_probs=126.9
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC----
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE---- 173 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~---- 173 (315)
+++||+++||++++ ||+++|++++|+|+||+|||+|+.+++.+.+.+|.+|+|+++|++... .+++.+|++.+
T Consensus 1 ri~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~ 79 (229)
T TIGR03881 1 RLSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE 79 (229)
T ss_pred CcCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence 37999999999999 999999999999999999999999999988888999999999998876 35777888754
Q ss_pred --CeEEeC-------------CCCHHHHHHHHHHHHHcC--CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHH
Q 021239 174 --NLLIAQ-------------PDSAENLLSVVDTLTKSG--SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (315)
Q Consensus 174 --~l~i~~-------------~~~~e~~~~~i~~l~~~~--~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l 236 (315)
++.+.+ ..+.+++...+++.++.. +++++||||++.+... ++ ...+ +.+
T Consensus 80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~-----~~------~~~r---~~~ 145 (229)
T TIGR03881 80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD-----KP------AMAR---KYS 145 (229)
T ss_pred cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc-----Ch------HHHH---HHH
Confidence 233332 235677888888777653 5789999999998631 11 1222 345
Q ss_pred HHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 237 RKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 237 ~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
..|.+.+++.|+|+|+++|...... ...+....|.+|..|.++...
T Consensus 146 ~~l~~~l~~~~~tvil~~~~~~~~~-----------~~~~~~~~~l~D~vI~L~~~~ 191 (229)
T TIGR03881 146 YYLKRVLNRWNFTILLTSQYAITTS-----------QAFGFGIEHVADGIIRFRKVV 191 (229)
T ss_pred HHHHHHHHhCCCEEEEEecccccCC-----------CCcccceEEEEeEEEEEEEec
Confidence 5666677899999999999643221 111234678889888888654
No 42
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.88 E-value=1.6e-21 Score=177.49 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=137.9
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChH--HHHH--cCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS--LAEA--MGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~--~~~~--~g~~ 171 (315)
+.+.+|||++.||.++| |+++|++++|.|+||+|||+|+.+++.+++.. |.+|+||++|++.... ++.. .|++
T Consensus 9 ~~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~ 86 (271)
T cd01122 9 SNEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKR 86 (271)
T ss_pred cccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCC
Confidence 44589999999999985 99999999999999999999999999999877 9999999999977552 2211 1332
Q ss_pred C------------------------CCeEEeCCC---CHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 A------------------------ENLLIAQPD---SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~------------------------~~l~i~~~~---~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
. .++++.+.. +.+++.+.++.++...++++||||+++.+........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~------ 160 (271)
T cd01122 87 LHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASG------ 160 (271)
T ss_pred cccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCch------
Confidence 2 124444322 5778888888888888999999999999873211000
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCC-CCC--ccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGL-GRM--DEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~-~~~--~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.....+.++++.|+.++++++|+|++++|+++........ +.+ .....|+..+.+.+|.+|.|.+...
T Consensus 161 --~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~ 231 (271)
T cd01122 161 --DERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ 231 (271)
T ss_pred --hHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCc
Confidence 1122355667778888899999999999998754221000 001 1224677788999999999998764
No 43
>PRK05636 replicative DNA helicase; Provisional
Probab=99.88 E-value=6.3e-21 Score=186.71 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=140.6
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecCCCCChHHHHHc----CCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAEAM----GID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E~~~~~~~~~~~----g~~ 171 (315)
...+++||++.||.+++ |+.+|++++|.|+||+|||+|++++|.+++ +.+.+|+||++||+..+...+-+ +++
T Consensus 244 ~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~ 321 (505)
T PRK05636 244 IATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVR 321 (505)
T ss_pred CCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCC
Confidence 35789999999999875 999999999999999999999999999877 45789999999999876322211 111
Q ss_pred -------------------------CCCeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 -------------------------AENLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 -------------------------~~~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
-.++++.+. .+.+++...++++..++++++||||+|+.+.......
T Consensus 322 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~------- 394 (505)
T PRK05636 322 LSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVE------- 394 (505)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCC-------
Confidence 114555543 3578899999988888899999999999875211100
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcc--ccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDE--VTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~--~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.+..++..+.+.|+.+|++++|+||+++|+++........ .|. --.++-.+.+.+|+.+.+.|...
T Consensus 395 --~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dk--rP~lsDLreSG~IEqdAD~vl~l~R~~~ 462 (505)
T PRK05636 395 --SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDK--RPQLADLRESGSLEQDADMVMLLYRPDS 462 (505)
T ss_pred --cHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCC--CCcHHHHhhcccccccCCEEEEEecccc
Confidence 1223578888899999999999999999999987542110 111 12467789999999999998754
No 44
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.88 E-value=1.5e-21 Score=176.78 Aligned_cols=183 Identities=22% Similarity=0.258 Sum_probs=132.3
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHH----HHHcCCCCC-
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSL----AEAMGIDAE- 173 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~----~~~~g~~~~- 173 (315)
+|+||++.||+++| |+.+|++++|.|+||+|||+|++++|.+++.. +.+|+||++|++..... +...+++..
T Consensus 1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~ 78 (259)
T PF03796_consen 1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK 78 (259)
T ss_dssp SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence 48999999999996 99999999999999999999999999999987 58999999999987632 222233211
Q ss_pred ------------------------CeEEeC--CCCHHHHHHHHHHHHHc-CCccEEeehhHhhhccccccCCCccCCChH
Q 021239 174 ------------------------NLLIAQ--PDSAENLLSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (315)
Q Consensus 174 ------------------------~l~i~~--~~~~e~~~~~i~~l~~~-~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~ 226 (315)
.+++.+ ..+.+++.+.++.+... .++++||||+++.+.+.....+ .
T Consensus 79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~------~- 151 (259)
T PF03796_consen 79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDN------R- 151 (259)
T ss_dssp HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSC------C-
T ss_pred hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCC------H-
Confidence 234433 23678888888888776 8899999999998874321111 1
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCc--cccccccccccccceEEEEEecccc
Q 021239 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMD--EVTSGGNALKFYAALRLRMMRTRLF 295 (315)
Q Consensus 227 ~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~--~~~~gG~~~~~~~~~rl~l~k~~~~ 295 (315)
...+....+.|+.+|++++++||+++|+++...... ...| ....++-.+.+.+|+.+.+.|.+..
T Consensus 152 --~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~--~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~ 218 (259)
T PF03796_consen 152 --RQEIGEISRELKALAKELNIPVIALSQLNREAEDRE--DKRPSLSDLRESGAIEQDADVVLFLHRDEKY 218 (259)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSS--SCS--HHHHCSTSSHHHH-SEEEEEEEHCHC
T ss_pred --HHHHHHHHHHHHHHHHHcCCeEEEccccChhhhccc--ccccchhhhhhhHHHHHHHhhhhhhccchhh
Confidence 123556677777778999999999999998763311 1011 1124677899999999999998754
No 45
>PHA02542 41 41 helicase; Provisional
Probab=99.87 E-value=1.8e-21 Score=189.18 Aligned_cols=189 Identities=15% Similarity=0.123 Sum_probs=140.9
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH--HH--HHcCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--LA--EAMGIDA 172 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~--~~--~~~g~~~ 172 (315)
...+++||++.||.+++ ||+.+|++++|+|+||+|||+|++++|.++++.|.+|+||++||+..+. |+ ...+++.
T Consensus 168 ~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~ 246 (473)
T PHA02542 168 KANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSL 246 (473)
T ss_pred CCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCH
Confidence 36789999999999997 8999999999999999999999999999998889999999999998863 21 2233332
Q ss_pred C-----------------------CeEEeC----CCCHHHHHHHHHHHHHcCC--ccEEeehhHhhhccccccCCCccCC
Q 021239 173 E-----------------------NLLIAQ----PDSAENLLSVVDTLTKSGS--IDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 173 ~-----------------------~l~i~~----~~~~e~~~~~i~~l~~~~~--~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
+ ++++.. ..+..++...++++....+ +++||||+++.+.+ ....... +
T Consensus 247 ~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~-~~~~~~~-~- 323 (473)
T PHA02542 247 DDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICAS-SRLRVSS-E- 323 (473)
T ss_pred HHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccC-CcccCCC-C-
Confidence 1 233332 1256788888888765444 89999999998862 1111111 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++....... +.-.-..++..+.+.+|..+.+.|...
T Consensus 324 ---nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~d--P~lsDLreSG~IEqdAD~vl~l~r~~~ 389 (473)
T PHA02542 324 ---NSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPATADFMLAVIETEE 389 (473)
T ss_pred ---ChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCC--CcchhcccccchHhhcCEEEEEecCcc
Confidence 123357788888888889999999999999998754221 111223567788999999999988653
No 46
>PRK08840 replicative DNA helicase; Provisional
Probab=99.87 E-value=2.2e-20 Score=181.50 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=139.2
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHH----cCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA----MGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~----~g~~ 171 (315)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++. .|.+|+||++||+..+...+- -+++
T Consensus 196 ~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~ 273 (464)
T PRK08840 196 GVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVD 273 (464)
T ss_pred CCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 45789999999999996 8999999999999999999999999999874 588999999999987632211 1221
Q ss_pred C--------------------------CCeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccC
Q 021239 172 A--------------------------ENLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPING 222 (315)
Q Consensus 172 ~--------------------------~~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~ 222 (315)
. .++++.+. .+..++...++++..++ ++++||||+|+.+..... .+
T Consensus 274 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~--~~--- 348 (464)
T PRK08840 274 QTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL--SD--- 348 (464)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC--CC---
Confidence 1 14555543 35778888888887654 589999999998752111 00
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 223 ~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++..+...+|+.+.+.|...
T Consensus 349 ----~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~ 416 (464)
T PRK08840 349 ----NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEV 416 (464)
T ss_pred ----chHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecccc
Confidence 12235778888888889999999999999998874421110001113467789999999999999754
No 47
>PRK05973 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.9e-21 Score=172.53 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcC
Q 021239 69 ALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG 148 (315)
Q Consensus 69 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g 148 (315)
.+|.+|++++..-|-..+.-+.. . .+-..| .|++. ||+++|++++|+|+||+|||+|+++++.+++++|
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~----~----~~~~~p-~~~l~--GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAA----K----AAATTP-AEELF--SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHH----h----ccCCCC-HHHhc--CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 57889999987655544422221 1 111112 67755 5999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCh--HHHHHcCCCCCCe----EEeC--CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCc
Q 021239 149 GYCAYLDVENALDP--SLAEAMGIDAENL----LIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPI 220 (315)
Q Consensus 149 ~~v~~i~~E~~~~~--~~~~~~g~~~~~l----~i~~--~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~ 220 (315)
++|+||++|++..+ .++..+|++.+++ .+.. ..+.++ .+++++...++++|||||++.+... ...
T Consensus 93 e~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~---ii~~l~~~~~~~lVVIDsLq~l~~~--~~~-- 165 (237)
T PRK05973 93 RTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADY---IIARLASAPRGTLVVIDYLQLLDQR--REK-- 165 (237)
T ss_pred CeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHH---HHHHHHHhhCCCEEEEEcHHHHhhc--ccc--
Confidence 99999999999876 5777888886643 2222 223333 4455555567899999999988521 110
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCC
Q 021239 221 NGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKS 262 (315)
Q Consensus 221 ~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~ 262 (315)
.++...++.|+.+++++|+|||+++|+.+..+.
T Consensus 166 ---------~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~ 198 (237)
T PRK05973 166 ---------PDLSVQVRALKSFARERGLIIVFISQIDRSFDP 198 (237)
T ss_pred ---------hhHHHHHHHHHHHHHhCCCeEEEEecCcccccc
Confidence 124455677888889999999999999988754
No 48
>PRK06749 replicative DNA helicase; Provisional
Probab=99.86 E-value=3.9e-20 Score=178.29 Aligned_cols=188 Identities=20% Similarity=0.190 Sum_probs=138.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHc----CCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAM----GIDA 172 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~----g~~~ 172 (315)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++..|.+|+||++||+..+...+-+ +++.
T Consensus 165 ~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~~ 242 (428)
T PRK06749 165 EITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVSG 242 (428)
T ss_pred CCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCCH
Confidence 45789999999999986 99999999999999999999999999999988899999999999876322211 1110
Q ss_pred ---------------------------CCeEEeCC--CCHHHHHHHHHHHHHcCC--ccEEeehhHhhhccccccCCCcc
Q 021239 173 ---------------------------ENLLIAQP--DSAENLLSVVDTLTKSGS--IDVIVVDSVAALIPKCEIGVPIN 221 (315)
Q Consensus 173 ---------------------------~~l~i~~~--~~~e~~~~~i~~l~~~~~--~~lVVIDsl~~l~~~~~~~~~~~ 221 (315)
-++++.+. .+.+++...++++...++ +.+||||+|+.+..... . .
T Consensus 243 ~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~-~---~ 318 (428)
T PRK06749 243 GRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPK-H---K 318 (428)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCC-C---C
Confidence 02445443 256788888888876655 55999999998752111 0 0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 222 ~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
+ ....++..+.+.|+.+|++++|+||+++|+++...+.....+.-.--.++..+...+|..+.+.|...
T Consensus 319 ~----~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~ 387 (428)
T PRK06749 319 G----NRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDY 387 (428)
T ss_pred C----CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeeccc
Confidence 0 12335778888888889999999999999999875421110000112367788999999999999764
No 49
>PRK06904 replicative DNA helicase; Validated
Probab=99.86 E-value=6.3e-20 Score=178.74 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=138.4
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHHc----CCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEAM----GID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~~----g~~ 171 (315)
...+++||+++||.+++ |+++|++++|+|+||+|||+|++++|.+++. .|.+|+||++||+..+...+-+ +++
T Consensus 200 ~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~ 277 (472)
T PRK06904 200 GVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVD 277 (472)
T ss_pred CCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 46789999999999986 9999999999999999999999999999875 5889999999999876322111 111
Q ss_pred ---------------------------CCCeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCcc
Q 021239 172 ---------------------------AENLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPIN 221 (315)
Q Consensus 172 ---------------------------~~~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~ 221 (315)
..++++.+. .+..++...++++.... ++++||||+|+.+... ...+
T Consensus 278 ~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~-~~~~--- 353 (472)
T PRK06904 278 QTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP-GFED--- 353 (472)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC-CCCC---
Confidence 113555543 36778888888876654 6999999999987531 1100
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 222 ~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.+.......+.-.--.++-.+...+|..+.+.|...
T Consensus 354 -----~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~ 421 (472)
T PRK06904 354 -----NRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEV 421 (472)
T ss_pred -----cHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEecccc
Confidence 12234677888888888999999999999998874421110000113467788999999999999754
No 50
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.86 E-value=1.3e-20 Score=168.26 Aligned_cols=146 Identities=25% Similarity=0.328 Sum_probs=111.7
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN 174 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~ 174 (315)
..+.++||++.||.+|+ ||+|+|++++|+|+||+|||+|+.+++.+.+++|++|+|+++|+++.. ..++++|++...
T Consensus 3 ~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~ 81 (234)
T PRK06067 3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81 (234)
T ss_pred CceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhH
Confidence 45679999999999999 999999999999999999999999999999889999999999998776 456778887653
Q ss_pred e------EEeC---------CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHH
Q 021239 175 L------LIAQ---------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (315)
Q Consensus 175 l------~i~~---------~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L 239 (315)
. .+.. ....++++..+.+.+++.+++++||||++.+... .. ...+.+++..+
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~~-----------~~~~~~~l~~l 148 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--AE-----------EDDILNFLTEA 148 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--CC-----------HHHHHHHHHHH
Confidence 2 2211 2344678888888888889999999999977521 00 01133444434
Q ss_pred HHHHhccCcEEEEEeccc
Q 021239 240 HYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 240 ~~~~~~~~i~VI~inq~~ 257 (315)
..+ ++.+++++++.|..
T Consensus 149 ~~l-~~~g~tvllt~~~~ 165 (234)
T PRK06067 149 KNL-VDLGKTILITLHPY 165 (234)
T ss_pred HHH-HhCCCEEEEEecCC
Confidence 322 45689999998864
No 51
>PRK07004 replicative DNA helicase; Provisional
Probab=99.85 E-value=2.5e-20 Score=181.28 Aligned_cols=187 Identities=16% Similarity=0.195 Sum_probs=139.4
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecCCCCChHHHHHc----CCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAEAM----GID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E~~~~~~~~~~~----g~~ 171 (315)
...+++||++.||++++ |+++|++++|+|+||+|||+|+++++.+++ ..|.+|+||++||+..+...+.+ +++
T Consensus 192 ~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~ 269 (460)
T PRK07004 192 DVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLD 269 (460)
T ss_pred CCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCC
Confidence 35689999999999986 999999999999999999999999999876 46889999999999887332221 121
Q ss_pred C-------------------------CCeEEeCC--CCHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccCC
Q 021239 172 A-------------------------ENLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 172 ~-------------------------~~l~i~~~--~~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
. .++++.+. .+..++...++++..+. ++++||||+|+.+..... +.
T Consensus 270 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~-----~~- 343 (460)
T PRK07004 270 QHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQ-----GE- 343 (460)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCC-----CC-
Confidence 1 13455443 35678888888887654 589999999998863211 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+.+.|+.+|++++|+||+++|+++.........+.-.--.++.++...+|.++.+.|...
T Consensus 344 ---~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~ 411 (460)
T PRK07004 344 ---NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEV 411 (460)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccc
Confidence 12345788888899999999999999999998874321110001112466779999999999999764
No 52
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.84 E-value=3.7e-20 Score=165.73 Aligned_cols=177 Identities=20% Similarity=0.258 Sum_probs=130.4
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHHH----HHcCCCCC--------
Q 021239 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLA----EAMGIDAE-------- 173 (315)
Q Consensus 107 ~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~~----~~~g~~~~-------- 173 (315)
+||.+++ |+++|++++|+|+||+|||+|+++++.+++.+ |.+|+||++|++....+. ...+++..
T Consensus 2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 6899986 99999999999999999999999999999987 999999999998876322 22344321
Q ss_pred -----------------CeEEeC--CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHH
Q 021239 174 -----------------NLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (315)
Q Consensus 174 -----------------~l~i~~--~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~ 234 (315)
++++.. ..+.+++.+.++.+++..++++|||||++.+.... .. . .....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~---~----~~~~~~~~ 150 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KK---G----NRQQEVAE 150 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CC---C----CHHHHHHH
Confidence 223322 24678888888888888899999999999876321 00 0 11233566
Q ss_pred HHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 235 ALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 235 ~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
+++.|+.+++++|+++|+++|+.+.......-.+......|+..+.+.+|..+.+.+.+.
T Consensus 151 ~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~ 210 (242)
T cd00984 151 ISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEY 210 (242)
T ss_pred HHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccc
Confidence 777888888999999999999987642211000011234567788999999999999863
No 53
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.84 E-value=3.3e-20 Score=183.32 Aligned_cols=150 Identities=23% Similarity=0.284 Sum_probs=118.7
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHHcCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAMGIDA 172 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~~g~~~ 172 (315)
...++++||+++||++|+ ||+|+|++++|+|+||+|||+|+++++.+.+.+ |++|+||++|++..+ ..+..+|++.
T Consensus 8 ~~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDL 86 (509)
T ss_pred CCCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCH
Confidence 356789999999999999 999999999999999999999999999998887 999999999999887 4677788875
Q ss_pred CC------eEEeCC------------CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHH
Q 021239 173 EN------LLIAQP------------DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (315)
Q Consensus 173 ~~------l~i~~~------------~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~ 234 (315)
++ +.+.+. .+.+++++.+.+.+...+++.|||||++.+... .+.. . .+.+
T Consensus 87 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--~d~~-------~---~~r~ 154 (509)
T PRK09302 87 QKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSG--FSNE-------A---VVRR 154 (509)
T ss_pred HHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhh--ccCH-------H---HHHH
Confidence 43 333221 134567778888888889999999999987631 1110 1 1234
Q ss_pred HHHHHHHHHhccCcEEEEEecccc
Q 021239 235 ALRKIHYSLCQSHTLIIFLNQVRF 258 (315)
Q Consensus 235 ~l~~L~~~~~~~~i~VI~inq~~~ 258 (315)
.+.++.+.+++.|+|++++.|...
T Consensus 155 ~l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 155 ELRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred HHHHHHHHHHhCCCEEEEEECCcc
Confidence 566666667889999999998754
No 54
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.84 E-value=6e-20 Score=162.76 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=118.0
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC-----CeE
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE-----NLL 176 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~-----~l~ 176 (315)
|+++||++++ ||+++|++++|.|+||+|||+||++++.+.+++|++|+|+++|+++.. .++..+|++.+ ++.
T Consensus 1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 7899999999 999999999999999999999999999999999999999999998876 56777887754 255
Q ss_pred EeCCCC------HHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEE
Q 021239 177 IAQPDS------AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLI 250 (315)
Q Consensus 177 i~~~~~------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~V 250 (315)
+.+..+ .+++...++..+++.+++++||||++.+.+ ..... .. ..+.+..+.+.+++.|+++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~~-------~~---~r~~l~~l~~~lk~~~~tv 147 (224)
T TIGR03880 80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDDD-------AE---RRTELFRFYSSLRETGVTT 147 (224)
T ss_pred EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCCH-------HH---HHHHHHHHHHHHHhCCCEE
Confidence 554332 334555566677778899999999998842 11110 11 1123334444447889999
Q ss_pred EEEeccccccCCCCCCCCCccccccccccccccceEEEEE
Q 021239 251 IFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMM 290 (315)
Q Consensus 251 I~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~ 290 (315)
+++.|...... + .. . -....+.+|..+.++
T Consensus 148 ll~s~~~~~~~----~---~~-~--~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 148 ILTSEADKTNV----F---AS-K--YGLIEYLADGVIILK 177 (224)
T ss_pred EEEEcccCCCC----C---cc-C--CCceEEEEeEEEEEe
Confidence 99999864210 0 00 0 122567777777775
No 55
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.84 E-value=3e-20 Score=182.19 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=113.5
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHHcCCCCC--
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAMGIDAE-- 173 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~~g~~~~-- 173 (315)
++++||+++||++|+ ||+++|++++|.|+||+|||+||+|++.+.+.+ |++|+|+++|++... ..++++|++.+
T Consensus 1 ~r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~ 79 (484)
T TIGR02655 1 AKIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKL 79 (484)
T ss_pred CcCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHH
Confidence 358999999999999 999999999999999999999999999988776 899999999998877 46888998765
Q ss_pred ----CeEEeCC------------CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHH
Q 021239 174 ----NLLIAQP------------DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALR 237 (315)
Q Consensus 174 ----~l~i~~~------------~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~ 237 (315)
++.+.+. ...+++.+.+...+...+++.|+|||+..+....+ .. .. ..+.+.
T Consensus 80 ~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~--~~-------~~---~r~~l~ 147 (484)
T TIGR02655 80 VDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD--AV-------SV---VRREIF 147 (484)
T ss_pred hhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC--ch-------HH---HHHHHH
Confidence 3444332 23456666777777888999999999998763111 10 11 112333
Q ss_pred HHHHHHhccCcEEEEEeccccc
Q 021239 238 KIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 238 ~L~~~~~~~~i~VI~inq~~~~ 259 (315)
.+.+.+++.|+|+++++|....
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHHHHCCCEEEEEecCccc
Confidence 4444447789999999998654
No 56
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.81 E-value=2.1e-20 Score=171.65 Aligned_cols=192 Identities=23% Similarity=0.329 Sum_probs=147.3
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh----HHHHHcCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP----SLAEAMGID 171 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~----~~~~~~g~~ 171 (315)
.....++||+.+||.+|+ ||++.|.+++|+||||+|||+||+.++..+.-.+++++|+|.+..+.. .++.+.+..
T Consensus 88 ~~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~ 166 (326)
T KOG1433|consen 88 SELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLR 166 (326)
T ss_pred ccceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhh
Confidence 356779999999999999 999999999999999999999998888887555679999999986543 455666554
Q ss_pred CC----CeEEeCCCCHHHHH---HHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHh
Q 021239 172 AE----NLLIAQPDSAENLL---SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (315)
Q Consensus 172 ~~----~l~i~~~~~~e~~~---~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~ 244 (315)
.. ++.+.+....++.. ........+....++++||..+.+. ..+.+ .+ ..... .+.++..++.+++++.
T Consensus 167 ~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~-~~~~g-~~-~~~a~-~~~~~~~~~~l~~la~ 242 (326)
T KOG1433|consen 167 GRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYR-TTFKG-RG-ELSAR-QMLLAKFLRSLKKLAD 242 (326)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEecccccccc-ccccc-cc-chHHH-HHHHHHHHHHHHHHHH
Confidence 44 33333333333222 2222334455789999999999984 45444 21 22222 2336778888888899
Q ss_pred ccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 245 QSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 245 ~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
+++++||++||+..+.+++.+|+.++.++.||+.|+|.+.+|+.+.+.
T Consensus 243 ~~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~ 290 (326)
T KOG1433|consen 243 EFGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKG 290 (326)
T ss_pred hcCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhc
Confidence 999999999999999998889998899999999999999999999883
No 57
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.1e-18 Score=163.87 Aligned_cols=187 Identities=18% Similarity=0.197 Sum_probs=144.0
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHHHHHc----CCCC
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEAM----GIDA 172 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~~~~~----g~~~ 172 (315)
..++|||++.||.+++ |+.+|++++++|+||+|||+||+++|.+++.. ..+|++|++||+..+...+-+ +++.
T Consensus 176 ~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~ 253 (435)
T COG0305 176 LIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIES 253 (435)
T ss_pred CcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHhhccccccch
Confidence 7899999999999997 89999999999999999999999999999874 567999999999987544433 2221
Q ss_pred C-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCCh
Q 021239 173 E-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (315)
Q Consensus 173 ~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~ 225 (315)
. .+++.+. .+..++...++++..+++.++++||+++.+......
T Consensus 254 ~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~--------- 324 (435)
T COG0305 254 SKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKS--------- 324 (435)
T ss_pred hccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccc---------
Confidence 1 2344332 356788889999988899999999999988742111
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccc
Q 021239 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLF 295 (315)
Q Consensus 226 ~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~ 295 (315)
.....+++.+.+.|+.+|++.+++||.++|+++.++......+...-.....++.+-+|..+++.|...-
T Consensus 325 ~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~y 394 (435)
T COG0305 325 ENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAY 394 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhhc
Confidence 2344568888899999999999999999999999865321111111223455778899999999998654
No 58
>PRK07773 replicative DNA helicase; Validated
Probab=99.80 E-value=1.9e-18 Score=180.31 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=121.7
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHHHHH----cCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEA----MGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~~~~----~g~~ 171 (315)
...+++||++.||.+++ |+++|++++|+|+||+|||+|++++|.+++.+ +.+|+||++||+..+...+. .+++
T Consensus 196 ~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~ 273 (886)
T PRK07773 196 LARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIK 273 (886)
T ss_pred CCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999885 99999999999999999999999999998854 78999999999998732221 2222
Q ss_pred CC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.+ ++++.+. .+.+++...++++.++.++++|||||++.+... . . .+
T Consensus 274 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~-~---~-~~-- 346 (886)
T PRK07773 274 LSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSG-K---K-YE-- 346 (886)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCC-C---C-CC--
Confidence 11 3444433 367888888888888889999999999987521 1 0 01
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCC
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKS 262 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~ 262 (315)
....++.++.+.|+.+|++++|+||+++|+++.+..
T Consensus 347 --~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~ 382 (886)
T PRK07773 347 --NRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQ 382 (886)
T ss_pred --CHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhc
Confidence 123357788888888899999999999999998743
No 59
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-18 Score=154.78 Aligned_cols=149 Identities=29% Similarity=0.386 Sum_probs=116.6
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC-
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN- 174 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~- 174 (315)
.+++|||++.||++++ ||+|+|.+++|+|+||+|||+|++|++.+.+..|.+|+|+++++++.. ..+.++|++.+.
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence 4679999999999999 999999999999999999999999999999999999999999999987 456678887641
Q ss_pred -----eEEe---------------CCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHH
Q 021239 175 -----LLIA---------------QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (315)
Q Consensus 175 -----l~i~---------------~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~ 234 (315)
+.+. .+...+.+...+.+.++..++..+||||+..+.... ... ... ..
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~--~~~-------~~~---r~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYL--NDP-------ALV---RR 148 (260)
T ss_pred hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhc--Cch-------HHH---HH
Confidence 1111 123456788888888888889999999999655211 110 111 24
Q ss_pred HHHHHHHHHhccCcEEEEEeccccc
Q 021239 235 ALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 235 ~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
.+..+.+..++.+++.+++.+....
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~ 173 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVE 173 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEeccccc
Confidence 5666666678889999999887433
No 60
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.73 E-value=7.7e-17 Score=143.48 Aligned_cols=169 Identities=21% Similarity=0.297 Sum_probs=115.2
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC-
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN- 174 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~- 174 (315)
...+.+++++||..++ ||+++|++++|.|+||+|||+||++++...+++|.+++|+++|++... ..++++|++.+.
T Consensus 3 ~~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~ 81 (230)
T PRK08533 3 LAKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKK 81 (230)
T ss_pred eEEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHH
Confidence 3457889999999999 999999999999999999999999999999889999999999998876 345677887652
Q ss_pred -----eEEeCC----CC---HHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHH
Q 021239 175 -----LLIAQP----DS---AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (315)
Q Consensus 175 -----l~i~~~----~~---~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~ 242 (315)
+.+.+. .. .+..+..+...+...+++++|||+++.... ...+ ....+.+.+.++.+
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~~d--------~~~~~~l~~~l~~l--- 149 (230)
T PRK08533 82 LISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-NDAS--------EVAVNDLMAFFKRI--- 149 (230)
T ss_pred hhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CCcc--------hHHHHHHHHHHHHH---
Confidence 222221 11 133333344444456899999999998762 1100 01223344444444
Q ss_pred HhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEec
Q 021239 243 LCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRT 292 (315)
Q Consensus 243 ~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~ 292 (315)
++.|++++++++..... . .. . ....|.+|..|.|+..
T Consensus 150 -~~~g~tvi~t~~~~~~~-~--------~~-~--~~~~~~~DgvI~L~~~ 186 (230)
T PRK08533 150 -SSLNKVIILTANPKELD-E--------SV-L--TILRTAATMLIRLEVK 186 (230)
T ss_pred -HhCCCEEEEEecccccc-c--------cc-c--eeEEEeeeEEEEEEEe
Confidence 34588888877754221 0 01 1 2467788888877754
No 61
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.72 E-value=5.4e-18 Score=146.38 Aligned_cols=151 Identities=24% Similarity=0.314 Sum_probs=87.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh----------cCCeEEEEecCCCCCh--HH
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK----------LGGYCAYLDVENALDP--SL 164 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~----------~g~~v~~i~~E~~~~~--~~ 164 (315)
....++++++.+|.+++ |++++|++++|+|+||+|||+++++++...+. .+.+|+|+++|++... .+
T Consensus 10 ~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~r 88 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARR 88 (193)
T ss_dssp ---HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHH
T ss_pred hhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHH
Confidence 34568999999999999 99999999999999999999999999999886 5679999999999654 33
Q ss_pred HHHcCCCCC---C-----------eEEeCCC----CHHHHHHHHHHHHHc-CCccEEeehhHhhhccccccCCCccCCCh
Q 021239 165 AEAMGIDAE---N-----------LLIAQPD----SAENLLSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (315)
Q Consensus 165 ~~~~g~~~~---~-----------l~i~~~~----~~e~~~~~i~~l~~~-~~~~lVVIDsl~~l~~~~~~~~~~~~~~~ 225 (315)
...+.-..+ + +.+.... ..+..++.+.+.+.. +++++||||+++.+... . . ..
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~--~-----~~ 160 (193)
T PF13481_consen 89 LRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-D--E-----NS 160 (193)
T ss_dssp HHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S----T-----T-
T ss_pred HHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-C--C-----CC
Confidence 333322211 1 1111111 124455666666666 78999999999999853 1 1 01
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 226 ~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
...+.+.++.|.++++++|++|++++|.++.
T Consensus 161 ---~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 161 ---NSAVAQLMQELKRLAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp ---HHHHHHHHHHHHHHHHHH--EEEEEEEE---
T ss_pred ---HHHHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 1112456666777779999999999999754
No 62
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=3.3e-15 Score=128.10 Aligned_cols=143 Identities=24% Similarity=0.340 Sum_probs=109.4
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC---
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN--- 174 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~--- 174 (315)
-+++|.++||+-|| ||+|-|+++.|-|+.|+|||.|+.+++..++.+|.++.|+++|.+... .-++.++++..+
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence 48999999999999 999999999999999999999999999999999999999999998876 456777877653
Q ss_pred ---eEEeCC---------CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHH
Q 021239 175 ---LLIAQP---------DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (315)
Q Consensus 175 ---l~i~~~---------~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~ 242 (315)
+.+.+. .....+++.+-+..+..+.++++|||++.....++ + . .+.+++..+.++
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~---~-------~---~vl~fm~~~r~l 154 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDS---E-------D---AVLNFMTFLRKL 154 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhccc---H-------H---HHHHHHHHHHHH
Confidence 333331 13346677776777777889999999998874321 0 1 244555555444
Q ss_pred HhccCcEEEEEeccc
Q 021239 243 LCQSHTLIIFLNQVR 257 (315)
Q Consensus 243 ~~~~~i~VI~inq~~ 257 (315)
.+.|-+||++-|..
T Consensus 155 -~d~gKvIilTvhp~ 168 (235)
T COG2874 155 -SDLGKVIILTVHPS 168 (235)
T ss_pred -HhCCCEEEEEeChh
Confidence 45677777777654
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.64 E-value=5.1e-15 Score=126.96 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=105.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCC------eEEeCCCC----H------
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN------LLIAQPDS----A------ 183 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~------l~i~~~~~----~------ 183 (315)
+++|+||||+|||+|+++++.+.++.|++|+|+++|++.+. .+++++|++.+. +.+.+... .
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 47899999999999999999999999999999999999877 567788887543 23332211 1
Q ss_pred HHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCC
Q 021239 184 ENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSG 263 (315)
Q Consensus 184 e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~ 263 (315)
.++...+...+...+++++|||+++.+... +. .. ....+..+...+++.|+++|+++|......
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~~-------~~---~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~-- 144 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----EQ-------ST---ARLEIRRLLFALKRFGVTTLLTSEQSGLEG-- 144 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----Ch-------HH---HHHHHHHHHHHHHHCCCEEEEEeccccCCC--
Confidence 134456666666778999999999988731 00 11 112233344444667999999999875531
Q ss_pred CCCCCCccccccccccccccceEEEEEecc
Q 021239 264 QGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 264 ~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
...+...+.+.+|..+.+++..
T Consensus 145 --------~~~~~~~~~~~aD~ii~l~~~~ 166 (187)
T cd01124 145 --------TGFGGGDVEYLVDGVIRLRLDE 166 (187)
T ss_pred --------cccCcCceeEeeeEEEEEEEEc
Confidence 1345567899999999998763
No 64
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.60 E-value=5.2e-14 Score=116.98 Aligned_cols=157 Identities=25% Similarity=0.360 Sum_probs=110.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHc----CCCCCCeEEeCCC----CHHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAM----GIDAENLLIAQPD----SAENLLSVVDTL 193 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~----g~~~~~l~i~~~~----~~e~~~~~i~~l 193 (315)
+++|+|+||+|||+++.+++..+...+++++|++.|........... ....++..+.... ............
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 47899999999999999999999989999999999998876432211 1122333333322 233333444555
Q ss_pred HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcccc
Q 021239 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVT 273 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~ 273 (315)
....+++++|||+++.+...... ... .....+.+.+..+...+++.++++|+++|....... .+ ...
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~-~~~------~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~--~~----~~~ 147 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALRE-IRE------GYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG--DP----RLT 147 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHH-HHh------cCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc--Cc----ccc
Confidence 66789999999999998742111 000 001235567788888888899999999999876632 22 226
Q ss_pred ccccccccccceEEEEEe
Q 021239 274 SGGNALKFYAALRLRMMR 291 (315)
Q Consensus 274 ~gG~~~~~~~~~rl~l~k 291 (315)
.|+..+.|.+|.++.+.|
T Consensus 148 ~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 148 RGAQNLEDIADTVIVLSR 165 (165)
T ss_pred cCccceeeecceEEEEeC
Confidence 788999999999999875
No 65
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.59 E-value=2.2e-14 Score=128.47 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=107.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh------------cCCeEEEEecCCCCCh--HHHHHcCCC-----C-CCeEEe-
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK------------LGGYCAYLDVENALDP--SLAEAMGID-----A-ENLLIA- 178 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~------------~g~~v~~i~~E~~~~~--~~~~~~g~~-----~-~~l~i~- 178 (315)
|.+.+|+||||+|||+|++++|.+++. .+++|+|++.|++.+. .|+..++.. . +++.+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999988762 4679999999998864 444444321 1 222221
Q ss_pred ---------CCC--CHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccC
Q 021239 179 ---------QPD--SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSH 247 (315)
Q Consensus 179 ---------~~~--~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~ 247 (315)
... .....++.+.+.+...++++||||++..+....+ .+ ... +.+++..|.++++++|
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~--~d------~~~---~~~~~~~L~~~a~~~g 149 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSE--ND------NGA---MDAVIKALRRIAAQTG 149 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCc--CC------HHH---HHHHHHHHHHHHHHhC
Confidence 111 1122333333333456899999999988742111 11 122 3345556666668899
Q ss_pred cEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccc
Q 021239 248 TLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLF 295 (315)
Q Consensus 248 i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~ 295 (315)
++|++++|..+...... .......|+.+|...++..+.+.+....
T Consensus 150 ~avl~v~H~~K~~~~~~---~~~~~~rGssal~~~~r~~~~l~~~~~~ 194 (239)
T cd01125 150 AAILLVHHVRKGSAKDG---DTQEAARGASALVDGARWVRALTRMTSE 194 (239)
T ss_pred CEEEEEeccCcccccCc---ccccccCcHHHHhcccceEEEEeeCCHH
Confidence 99999999986653211 1234577899999999999999988653
No 66
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.35 E-value=6.3e-12 Score=113.78 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=105.8
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHh----------cCCeEEEEecCCCCChH------HHHHcCCCCCCeEEe
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK----------LGGYCAYLDVENALDPS------LAEAMGIDAENLLIA 178 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~----------~g~~v~~i~~E~~~~~~------~~~~~g~~~~~l~i~ 178 (315)
+-+..|-..+|+|++|+||||+++.++..++. ..++|+|+++|...+.. ...++|+.+.++...
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~ 163 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNM 163 (402)
T ss_pred HHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhe
Confidence 45567888999999999999999998877653 34799999999988762 355678876654333
Q ss_pred CCC------C-----HHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccC
Q 021239 179 QPD------S-----AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSH 247 (315)
Q Consensus 179 ~~~------~-----~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~ 247 (315)
+.. . ...+.......+.+..|++||||++..++.. +.....|.+++.+.+++| ++.++
T Consensus 164 dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G--------~s~s~vqv~~fi~~~rkl---a~~l~ 232 (402)
T COG3598 164 DLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEG--------KSISDVQVKEFIKKTRKL---ARNLE 232 (402)
T ss_pred eccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCC--------ccchhHHHHHHHHHHHHH---HHhcC
Confidence 221 1 1134444445556778999999999999842 233335555555555555 58999
Q ss_pred cEEEEEeccccccCCCCCCCCCccccccccccccccceEEEE
Q 021239 248 TLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRM 289 (315)
Q Consensus 248 i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l 289 (315)
|+||+++|....... ++....|+..|.....+++.+
T Consensus 233 caIiy~hHtskss~~------~ksgrsGs~~dg~~l~~~l~l 268 (402)
T COG3598 233 CAIIYIHHTSKSSGK------NKSGRSGSVSDGKFLTTPLML 268 (402)
T ss_pred CeEEEEeccccccCC------CCCCCCCccCccHHHhhHHHH
Confidence 999999999866522 222334445554444444443
No 67
>PRK04296 thymidine kinase; Provisional
Probab=99.15 E-value=5.2e-10 Score=96.77 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=81.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec--CCCC-ChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHc
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV--ENAL-DPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~--E~~~-~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~ 196 (315)
|.+++++||+|+||||+++.++..+...|.+|+++.. +... ...++.++|+......+ ...++++..+.+ ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence 7899999999999999999999999988999999843 3322 22456667766555322 345566666655 45
Q ss_pred CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.++++|+||+++.+.. .| +..+.+.++..|++||++....+-.
T Consensus 77 ~~~dvviIDEaq~l~~--------------~~-------v~~l~~~l~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK--------------EQ-------VVQLAEVLDDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCCCEEEEEccccCCH--------------HH-------HHHHHHHHHHcCCeEEEEecCcccc
Confidence 6789999999975431 11 2234445578899999998876543
No 68
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.04 E-value=1.6e-09 Score=99.11 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=118.5
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH---HHHH-cCCCCC------
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS---LAEA-MGIDAE------ 173 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~---~~~~-~g~~~~------ 173 (315)
-++.|++.|+ |.++|+++++.||.|+|||||+..++...+.+|-+.+|-++|.+.... +..+ .|+...
T Consensus 259 RFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373|consen 259 RFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred hhhHHHHHhc--cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence 4788999997 999999999999999999999999999999999999999999876541 1111 233221
Q ss_pred --------Ce--E---EeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHH
Q 021239 174 --------NL--L---IAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIH 240 (315)
Q Consensus 174 --------~l--~---i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~ 240 (315)
++ + +......+..++.+...+--+++.-||||.++.+.....+..+. -..|.+ +...+++++
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Dr----f~~QD~-iig~fR~fA 411 (514)
T KOG2373|consen 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDR----FHLQDR-IIGYFRQFA 411 (514)
T ss_pred hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccch----hhhHHH-HHHHHHHHh
Confidence 11 1 11122344455555555545678899999999998543332211 112333 444555554
Q ss_pred HHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccccc
Q 021239 241 YSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFK 296 (315)
Q Consensus 241 ~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k 296 (315)
.+++|-|-++-|.++.-....- +....-|....+.-+|..|.+...+...
T Consensus 412 ---T~nn~HvTlVvHPRKed~d~El---~t~s~fGsAkatQEADNVliiQdkrl~~ 461 (514)
T KOG2373|consen 412 ---TQNNIHVTLVVHPRKEDGDTEL---DTQSFFGSAKATQEADNVLIIQDKRLDR 461 (514)
T ss_pred ---hccceeEEEEecccccCCCcee---eehhhccccccccccccEEEEeeccccc
Confidence 9999999999999876522100 1111234444556778888888776543
No 69
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.97 E-value=2.4e-09 Score=90.76 Aligned_cols=119 Identities=18% Similarity=0.344 Sum_probs=70.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC----CCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~----~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
+++|.|++|||||+||.+++.. .+++++|+.+..+.+.++.+++.. .+...... ....++.+.+.+. .
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~--E~~~~l~~~l~~~---~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI--ETPRDLVSALKEL---D 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe--ecHHHHHHHHHhc---C
Confidence 4789999999999999999865 578999999999988765554321 12222221 1122333333221 2
Q ss_pred CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 021239 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLN 254 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~in 254 (315)
+.++|+||+++.+... .+..+.+.. ...+.+.+..+...+++.++++|+++
T Consensus 73 ~~~~VLIDclt~~~~n-~l~~~~~~~-----~~~~~~~i~~l~~~l~~~~~~~viVs 123 (169)
T cd00544 73 PGDVVLIDCLTLWVTN-LLFADLEEW-----EAAIADEIDALLAAVRNKPGTLILVS 123 (169)
T ss_pred CCCEEEEEcHhHHHHH-hCCCccccc-----hhHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5779999999999843 322111000 00122334445555567777655554
No 70
>PF13479 AAA_24: AAA domain
Probab=98.93 E-value=9.2e-09 Score=90.54 Aligned_cols=158 Identities=22% Similarity=0.179 Sum_probs=95.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH-cCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK-SGS 198 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~-~~~ 198 (315)
+-.++|+|+||+|||+|+..+ .+++||++|......... .+....++.+++++.+.+..+.+ ..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~------~~~~~i~i~s~~~~~~~~~~l~~~~~~ 68 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFL------DDGDVIPITSWEDFLEALDELEEDEAD 68 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhh------cCCCeeCcCCHHHHHHHHHHHHhccCC
Confidence 346899999999999999876 689999999985431100 02223344588888887776543 468
Q ss_pred ccEEeehhHhhhcccc--ccC-------CCccCCChHHHHHHHHHHHHHHHH-HHhccCcEEEEEeccccccC-CCCCCC
Q 021239 199 IDVIVVDSVAALIPKC--EIG-------VPINGMYSDAQSRIMTQALRKIHY-SLCQSHTLIIFLNQVRFSAK-SGQGLG 267 (315)
Q Consensus 199 ~~lVVIDsl~~l~~~~--~~~-------~~~~~~~~~~q~r~i~~~l~~L~~-~~~~~~i~VI~inq~~~~~~-~~~~~~ 267 (315)
++.|||||++.+.... ... ...+..........+.+.+.++.+ +....+..||+|.|...... .++.|.
T Consensus 69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~~~~~~~~ 148 (213)
T PF13479_consen 69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEEDEDGGKYT 148 (213)
T ss_pred CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEcCCCCcee
Confidence 9999999999874211 111 000111001112223444444444 34568999999999987765 222221
Q ss_pred --CCccccccccccccccceEEEEEe
Q 021239 268 --RMDEVTSGGNALKFYAALRLRMMR 291 (315)
Q Consensus 268 --~~~~~~~gG~~~~~~~~~rl~l~k 291 (315)
.......-...+..++|...++..
T Consensus 149 ~~~~~l~~k~~~~l~~~~D~V~~l~~ 174 (213)
T PF13479_consen 149 RYKPKLGKKVRNELPGWFDVVGRLRV 174 (213)
T ss_pred EEeeccChhHHhhhhecccEEEEEEE
Confidence 011122334677788888877664
No 71
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.78 E-value=5.1e-08 Score=78.36 Aligned_cols=114 Identities=21% Similarity=0.342 Sum_probs=78.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhc-----CCeEEEEecCCCCCh-----HHHHHcCCCCCCeEEeCCCCHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-----GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENLL 187 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~-----g~~v~~i~~E~~~~~-----~~~~~~g~~~~~l~i~~~~~~e~~~ 187 (315)
+.+.++.|+|++|+|||+++.+++...... ..+++|+........ .+++.++..... ..+.+++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 356789999999999999999999988754 668888887655533 345666655444 45677888
Q ss_pred HHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 188 SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 188 ~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
..+.+.+...+..+||||.++.+. . ..+...++.+ +.+.++.+|++.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~-~----------------~~~l~~l~~l---~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLF-S----------------DEFLEFLRSL---LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHH-T----------------HHHHHHHHHH---TCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcC-C----------------HHHHHHHHHH---HhCCCCeEEEEECh
Confidence 888888887777899999999864 1 1133444444 46889999988765
No 72
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.77 E-value=5e-08 Score=85.88 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC-C-----hHHHHHcCCCCCCeEEeCCCCHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-----PSLAEAMGIDAENLLIAQPDSAEN 185 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~-~-----~~~~~~~g~~~~~l~i~~~~~~e~ 185 (315)
-+++|+++.|.||+|||||||+..+..-....++.+.+-..+... . ..|.+.+|+-.++..+.+..++.+
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~E 102 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLE 102 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHH
Confidence 478999999999999999999966655544445555544323221 1 145667887777655555444443
No 73
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.70 E-value=8.4e-08 Score=86.08 Aligned_cols=125 Identities=19% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC---ChHHHHHcCCCCCC------eEEeC-------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---DPSLAEAMGIDAEN------LLIAQ------- 179 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~---~~~~~~~~g~~~~~------l~i~~------- 179 (315)
-+++|+++.|.||+|||||||...++.-.....+.| +++...-. ..++|+.+++-++. +.+.+
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 467999999999999999999988877665444444 45543322 23677777765442 11110
Q ss_pred --------CC----------------------------CHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 180 --------PD----------------------------SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 180 --------~~----------------------------~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
.. ..+...-++.+.+ ..+++++++|..+.... +
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL-aQ~~~iLLLDEPTs~LD---i------- 171 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL-AQETPILLLDEPTSHLD---I------- 171 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH-hcCCCEEEeCCCccccC---H-------
Confidence 00 0111111122222 24689999998887762 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRF 258 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~ 258 (315)
..|. ++.+.++++. ++.|.|||++-|--.
T Consensus 172 --~~Q~-evl~ll~~l~---~~~~~tvv~vlHDlN 200 (258)
T COG1120 172 --AHQI-EVLELLRDLN---REKGLTVVMVLHDLN 200 (258)
T ss_pred --HHHH-HHHHHHHHHH---HhcCCEEEEEecCHH
Confidence 1233 3556666664 899999999988753
No 74
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.69 E-value=4.5e-08 Score=83.14 Aligned_cols=119 Identities=13% Similarity=0.207 Sum_probs=70.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC----CCCCeE-EeCCCCHHHHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENLL-IAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~----~~~~l~-i~~~~~~e~~~~~i~~l~~ 195 (315)
.+++|.|+||||||++|..++... +.+++|+++....+.++.+++.. -++... +..+.+..+ .+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~---~i~~~-- 73 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAE---LLRAD-- 73 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHH---HHHhh--
Confidence 478999999999999999997654 55789999987777655444311 122222 222223333 23221
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
..+.++|+||+++.+.. ..+..+. ...+...+..+...+++.++++|+++..
T Consensus 74 ~~~~~~VlID~Lt~~~~-n~l~~~~--------~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 74 AAPGRCVLVDCLTTWVT-NLLFEEG--------EEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred cCCCCEEEehhHHHHHH-HHhcccc--------hHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 13467999999999973 2221110 0012233444555557778777776543
No 75
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=1.2e-07 Score=84.61 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=99.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC----ChHHHHHcCCCCCCe--EEeCC---------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----DPSLAEAMGIDAENL--LIAQP--------- 180 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~----~~~~~~~~g~~~~~l--~i~~~--------- 180 (315)
.+++|+.+.|.|++|||||||+..++.-.....+.+ +++..... .....+..|+..+|- .+..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 578999999999999999999998887777666676 55544332 123445566543321 11111
Q ss_pred -----CCHHHHHHHHHHHHH----------------cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHH
Q 021239 181 -----DSAENLLSVVDTLTK----------------SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (315)
Q Consensus 181 -----~~~e~~~~~i~~l~~----------------~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L 239 (315)
.+.+++...+...++ .+..+.|.|.++-++-|.--+-+|+...++....+.+.+.+++|
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 122333333332221 12235666666666665555555665555556566677777777
Q ss_pred HHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccC
Q 021239 240 HYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIAD 299 (315)
Q Consensus 240 ~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~ 299 (315)
. .+.+.|+|+++|....+.. +++..+.+.+.+.+.++.
T Consensus 185 ~---~~~~~tii~~tHd~~~~~~-------------------~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 185 K---EEGGKTIIIVTHDLELVLE-------------------YADRVVVLDDGKILADGD 222 (235)
T ss_pred H---hcCCCeEEEEeCcHHHHHh-------------------hCCEEEEEECCEEeecCC
Confidence 5 7778999999999876621 556666666665545543
No 76
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.67 E-value=2.9e-07 Score=73.32 Aligned_cols=92 Identities=28% Similarity=0.338 Sum_probs=60.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
.+..++|+||||+|||+++..++......+..++|++.+............ ..................+...++...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL--IIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHh--hhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999998887665579999988776654333210 000000111222333334444455555
Q ss_pred ccEEeehhHhhhcc
Q 021239 199 IDVIVVDSVAALIP 212 (315)
Q Consensus 199 ~~lVVIDsl~~l~~ 212 (315)
+.+++||++..+..
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 89999999998873
No 77
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.60 E-value=4.4e-07 Score=79.97 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=86.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC-CCCCeEEeCCCCHHHHHHHHHHHH-HcC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI-DAENLLIAQPDSAENLLSVVDTLT-KSG 197 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~-~~~~l~i~~~~~~e~~~~~i~~l~-~~~ 197 (315)
...++|+|+||+||||+|.+++ ++.++++++...... .|. +.+-+.+..+.+.+.+.+.+..+- ...
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l----~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~ 80 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVL----IGDENVDIADHDDMPPIQAMVEFYVMQNIQAV 80 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhc----cCCCCCceeecCCCCCHHHHHHHHHHHHhccc
Confidence 4679999999999999998772 567888888754321 111 111112234456677766665442 235
Q ss_pred CccEEeehhHhhhcccc----ccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCC---CCCCCCCc
Q 021239 198 SIDVIVVDSVAALIPKC----EIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKS---GQGLGRMD 270 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~~~----~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~---~~~~~~~~ 270 (315)
+++.||||++..+.... .-.+..+.... .....+...+..+.+.+.+.+..||+++|....... |+.|. .
T Consensus 81 ~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~-~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~~~~~~de~G~~~~--r 157 (220)
T TIGR01618 81 KYDNIVIDNISALQNLWLENIGRAAKNGQPEL-QHYQKLDLWFLDLLTVLKESNKNIYATAWELTNQSSGESGQIYN--R 157 (220)
T ss_pred cCCEEEEecHHHHHHHHHHHHhhhcCCCCccc-ccHHHHHHHHHHHHHHHHhCCCcEEEEEeeccccccCCCCCCcc--e
Confidence 68999999999886311 00011111000 001112223333333336689999999999643211 12121 1
Q ss_pred ccccc----ccccccccceEEEEEe
Q 021239 271 EVTSG----GNALKFYAALRLRMMR 291 (315)
Q Consensus 271 ~~~~g----G~~~~~~~~~rl~l~k 291 (315)
..|.. .+.+...+|...++..
T Consensus 158 ~~P~i~~K~~n~l~G~~DvV~rl~i 182 (220)
T TIGR01618 158 YQPDIREKVLNAFLGLTDVVGRIVL 182 (220)
T ss_pred echhhhhhHHHhhcccccEEEEEEE
Confidence 22322 2345567788887763
No 78
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.55 E-value=3.3e-07 Score=81.93 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|+|||||...++.-.....+.+
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 478999999999999999999998877554433333
No 79
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.54 E-value=5.6e-07 Score=79.83 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=49.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---HHHHHcCCCCCCeEEeCCCCHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---SLAEAMGIDAENLLIAQPDSAENLLS 188 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---~~~~~~g~~~~~l~i~~~~~~e~~~~ 188 (315)
-++.|+++.+.||+||||||++..+- ........-++|+.+...+. .+.+++|+..+++-+++..+.++.+.
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMIN-rLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa 97 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIA 97 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHh-cccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHH
Confidence 47899999999999999999986554 34444444557777665543 56777888887766655555444433
No 80
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.54 E-value=9.9e-07 Score=75.31 Aligned_cols=122 Identities=11% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---------hHHHHHcCCCCC--CeEEeCCCCH-H
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---------PSLAEAMGIDAE--NLLIAQPDSA-E 184 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---------~~~~~~~g~~~~--~l~i~~~~~~-e 184 (315)
+++|+++.|.||+|+|||||...+.. ..+.+.+........ ....+.+++... +-........ .
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~ 93 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGEL 93 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHH
Confidence 67999999999999999999987642 122332221100000 134555665421 1111111111 2
Q ss_pred HHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 185 NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 185 ~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
+-+.+.+.++...+++++++|....-... ...+.+.+.++.+ .+.+.+||+++|-...
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~-------------~~~~~l~~~l~~~----~~~g~tvIivSH~~~~ 151 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQ-------------QDINQLLEVIKGL----IDLGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH
Confidence 34455555655444999999987765521 2222344444444 3469999999998643
No 81
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.53 E-value=8.2e-07 Score=75.44 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--C-hHHHHHcCCCCCCeEEeCCCCHHH--------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIAQPDSAEN-------- 185 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~-~~~~~~~g~~~~~l~i~~~~~~e~-------- 185 (315)
+++|+++.|.|++|+|||||+..++.......+.+. ++.+... . ..+.+.+++.+++..+... +..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~lLS~G~~ 102 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR-LDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQR 102 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE-ECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHCcCHHHH
Confidence 569999999999999999999988877655555554 4432211 1 1234455555554333322 3322
Q ss_pred -HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 186 -LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 186 -~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
-+.+++.++ .+++++++|....-... ...+.+.+.++.+ .+.+.++|+++|-...
T Consensus 103 qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~----~~~~~tii~~sh~~~~ 158 (173)
T cd03246 103 QRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAAL----KAAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH
Confidence 223333333 47899999977755521 1122344555544 3458999999987543
No 82
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=5e-07 Score=77.09 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC----ChHHHHHcCCCCCCeEEeCCCCHHH-------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----DPSLAEAMGIDAENLLIAQPDSAEN------- 185 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~----~~~~~~~~g~~~~~l~i~~~~~~e~------- 185 (315)
+++|+++.|.|++|+|||||+..++.......+.+.+-..+-.. ...+.+.+++.+++..+....+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 57999999999999999999998887655445555442221111 1123334444444332222222222
Q ss_pred -----HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 186 -----LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 186 -----~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
-+.+++.++ .+++++++|....-... .....+.+.++++. ++.+.++|+++|-....
T Consensus 103 ~G~~qr~~la~al~--~~p~llilDEP~~~LD~-------------~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 103 GGQQQRVALARALA--MDPDVLLLDEPTSALDP-------------ITRREVRALLKSLQ---AQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEeCCcccCCH-------------HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 222333333 47899999977654410 11223445555443 55589999999976554
No 83
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.51 E-value=1.3e-06 Score=74.33 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=53.6
Q ss_pred cccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-----HHHHHcCCCCCCe
Q 021239 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-----SLAEAMGIDAENL 175 (315)
Q Consensus 101 i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-----~~~~~~g~~~~~l 175 (315)
.+.|-+.|+.+-= -+++|+++.+.||+|+|||||..-+........+.+.+.+.+-+.-. ...+++|+..++.
T Consensus 11 Y~~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~ 88 (223)
T COG2884 11 YPGGREALRDVSF--HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDF 88 (223)
T ss_pred cCCCchhhhCceE--eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeec
Confidence 4556557776544 68899999999999999999999988888777778877766544321 3456677765543
No 84
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.51 E-value=4.2e-07 Score=83.85 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=81.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC-hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHH--
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDT-- 192 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~-~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~-- 192 (315)
-+++|+++.|.||+|+||||+...++......++.+.+...+.... ....+++|+-+++..+....++.+.+..+..
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 5789999999999999999999988887777777777666544443 2445567766654433333322222211110
Q ss_pred -------------HH-----------------------------HcCCccEEeehhHhhhccccccCCCccCCChHHHHH
Q 021239 193 -------------LT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (315)
Q Consensus 193 -------------l~-----------------------------~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r 230 (315)
++ --.+|+++++|..+.=. +....+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GL-------------Dp~~~~ 173 (293)
T COG1131 107 GLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGL-------------DPESRR 173 (293)
T ss_pred CCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCC-------------CHHHHH
Confidence 00 02467888888655332 113334
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEeccccccC
Q 021239 231 IMTQALRKIHYSLCQSHTLIIFLNQVRFSAK 261 (315)
Q Consensus 231 ~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~ 261 (315)
.+.+.++.++ ++.+++|++++|....+.
T Consensus 174 ~~~~~l~~l~---~~g~~tvlissH~l~e~~ 201 (293)
T COG1131 174 EIWELLRELA---KEGGVTILLSTHILEEAE 201 (293)
T ss_pred HHHHHHHHHH---hCCCcEEEEeCCcHHHHH
Confidence 4566666664 666699999999987763
No 85
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=9.9e-07 Score=78.71 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=79.1
Q ss_pred HHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
|+..+++.....++.+|+.+.+ .. ...+-.+.. |. ....+.|+|++|+|||+|+..++..+...|.++.|++
T Consensus 5 Ql~l~~~~~~~~~f~~f~~~~~-n~----~~~~~~~~~-~~--~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 5 QLPLALRYPSDQRFDSYIAAPD-GL----LAQLQALAA-GQ--SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CccccCCCCCcCChhhccCCcH-HH----HHHHHHHHh-cc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 6666777666677777653221 11 112112222 22 3467999999999999999999999888899999998
Q ss_pred cCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHH
Q 021239 156 VENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQA 235 (315)
Q Consensus 156 ~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~ 235 (315)
.++.. ..+...+..+ .++++||||.+..+.... ... ..
T Consensus 77 ~~~~~-----------------------~~~~~~~~~l---~~~dlLiIDDi~~l~~~~------------~~~----~~ 114 (233)
T PRK08727 77 LQAAA-----------------------GRLRDALEAL---EGRSLVALDGLESIAGQR------------EDE----VA 114 (233)
T ss_pred HHHhh-----------------------hhHHHHHHHH---hcCCEEEEeCcccccCCh------------HHH----HH
Confidence 53311 1111222222 367899999987664210 111 12
Q ss_pred HHHHHHHHhccCcEEEEEecc
Q 021239 236 LRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 236 l~~L~~~~~~~~i~VI~inq~ 256 (315)
+-.+.+..++.+..+|++++.
T Consensus 115 lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 115 LFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred HHHHHHHHHHcCCeEEEECCC
Confidence 223444446667888887764
No 86
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=6.6e-07 Score=76.00 Aligned_cols=124 Identities=16% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--hHHHHHcCCCCCCeEEeCCCCHHHH--------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENL-------- 186 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~~~~~~~g~~~~~l~i~~~~~~e~~-------- 186 (315)
+++|+++.|.|++|+|||||+..++.......+.+. ++.+.... ..+.+.+++.+++..+....+..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK-VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 569999999999999999999988776554455554 43322111 2223345554444333332233222
Q ss_pred --HHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 187 --LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 187 --~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+.+.+.++ .+|+++++|....-... ...+.+.+.++++. ++ +.++|+++|-....
T Consensus 102 qrv~laral~--~~p~illlDEPt~~LD~-------------~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 102 QRLALAQALL--HDPELLILDEPTSGLDP-------------ESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 22333333 47899999987765521 22233555555553 44 88999999876543
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.48 E-value=1.9e-06 Score=76.95 Aligned_cols=135 Identities=15% Similarity=0.243 Sum_probs=80.6
Q ss_pred HHHHhhCcccccccccccCCCCCCccccCcHHHHHhhc-CCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEE
Q 021239 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALG-IGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (315)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~-~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i 154 (315)
|+..++......++.+|+.+.+ ..-+..++.... .++++ ...+.|+|++|+|||+|+..++..+...+.+|+|+
T Consensus 5 Ql~l~~~~~~~~tfdnF~~~~~----~~a~~~~~~~~~~~~~~~-~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~ 79 (234)
T PRK05642 5 QLPLGVRLRDDATFANYYPGAN----AAALGYVERLCEADAGWT-ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL 79 (234)
T ss_pred ccccCCCCCCcccccccCcCCh----HHHHHHHHHHhhccccCC-CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 6666777666677777653321 111233333222 01222 35689999999999999998888877778899999
Q ss_pred ecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHH
Q 021239 155 DVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (315)
Q Consensus 155 ~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~ 234 (315)
+.++-.. ..+++.+. + .++++++||-++.+.... . ...
T Consensus 80 ~~~~~~~--------------------~~~~~~~~---~---~~~d~LiiDDi~~~~~~~------------~----~~~ 117 (234)
T PRK05642 80 PLAELLD--------------------RGPELLDN---L---EQYELVCLDDLDVIAGKA------------D----WEE 117 (234)
T ss_pred eHHHHHh--------------------hhHHHHHh---h---hhCCEEEEechhhhcCCh------------H----HHH
Confidence 9643111 01122222 1 146899999999775210 1 112
Q ss_pred HHHHHHHHHhccCcEEEEEeccc
Q 021239 235 ALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 235 ~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
.+..+.+.+.+.|..+|+++...
T Consensus 118 ~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 118 ALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCC
Confidence 34445455577777777777653
No 88
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.47 E-value=5.6e-07 Score=75.77 Aligned_cols=118 Identities=15% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--h-H-HHHHcCCCCCCeEEeCCCCHH-HHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--P-S-LAEAMGIDAENLLIAQPDSAE-NLLSVVD 191 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~-~-~~~~~g~~~~~l~i~~~~~~e-~~~~~i~ 191 (315)
+++|+++.|.|++|+|||||+..++.......+.+. ++.+.... . . +.+.+++ +.+-...+ +-+...+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~------~~qLS~G~~qrl~lar 95 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL-VDGKEVSFASPRDARRAGIAM------VYQLSVGERQMVEIAR 95 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEECCcCCHHHHHhcCeEE------EEecCHHHHHHHHHHH
Confidence 679999999999999999999988776655555654 44322111 1 1 1122222 22222233 2333444
Q ss_pred HHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 192 TLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.++ .+|+++++|....-.. ....+.+.+.++.+ .+.+.++|+++|.....
T Consensus 96 al~--~~p~illlDEP~~~LD-------------~~~~~~l~~~l~~~----~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 96 ALA--RNARLLILDEPTAALT-------------PAEVERLFKVIRRL----RAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHh--cCCCEEEEECCCcCCC-------------HHHHHHHHHHHHHH----HHCCCEEEEEeCCHHHH
Confidence 443 4789999997765441 02233355555555 33489999999886554
No 89
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.47 E-value=5.9e-07 Score=86.15 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=83.5
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHH--cCCCCC-------
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEA--MGIDAE------- 173 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~--~g~~~~------- 173 (315)
|+..+|..-- -+++|++..|.|++|+|||||+..+...+....+.+.+-.-+-.+.. .-|.+ +|+..+
T Consensus 16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceee--eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 6777776544 68899999999999999999998887777665444433222222221 12222 222222
Q ss_pred -----CeE------------------------------------EeCCC-CHHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 174 -----NLL------------------------------------IAQPD-SAENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 174 -----~l~------------------------------------i~~~~-~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
|+. +.+.. ...+-+++++.+. .+++++|+|..++..
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy--r~a~iLILDEPTaVL 171 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY--RGARLLILDEPTAVL 171 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh--cCCCEEEEcCCcccC
Confidence 111 11111 1224455555554 378999999999887
Q ss_pred cccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 212 PKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 212 ~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.. .....+.+.+++| ++.|.+||+|+|--..+
T Consensus 172 TP-------------~E~~~lf~~l~~l----~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 172 TP-------------QEADELFEILRRL----AAEGKTIIFITHKLKEV 203 (501)
T ss_pred CH-------------HHHHHHHHHHHHH----HHCCCEEEEEeccHHHH
Confidence 42 2334455555555 78899999999975443
No 90
>PRK06893 DNA replication initiation factor; Validated
Probab=98.47 E-value=1.4e-06 Score=77.43 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
|+..+++.....++.+|+.+.+.. ....+-+... + .....+.|+||||+|||+|+..++.++..++.++.|++
T Consensus 2 Ql~l~~~~~~~~~fd~f~~~~~~~----~~~~~~~~~~-~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 2 QLPLPIHQIDDETLDNFYADNNLL----LLDSLRKNFI-D--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CcccCCCCCCcccccccccCChHH----HHHHHHHHhh-c--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 445556665556777766433211 1122222233 2 22346899999999999999999999988888999999
Q ss_pred cC
Q 021239 156 VE 157 (315)
Q Consensus 156 ~E 157 (315)
.+
T Consensus 75 ~~ 76 (229)
T PRK06893 75 LS 76 (229)
T ss_pred HH
Confidence 64
No 91
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.46 E-value=6.2e-07 Score=83.56 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=39.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC-hHHHHHcCCCCCCeEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIA 178 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~-~~~~~~~g~~~~~l~i~ 178 (315)
++.|+++.|.||+||||||++..+|.--...++.+ +|+.+.-.+ +..-+.+++.+++..++
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~~R~iamVFQ~yALy 87 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPEKRGIAMVFQNYALY 87 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhHCCEEEEeCCcccc
Confidence 56899999999999999999988876655555554 454433222 23334455555544333
No 92
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.45 E-value=8.2e-07 Score=82.45 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 46799999999999999999999888766555555544
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.45 E-value=2.5e-06 Score=76.24 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=53.3
Q ss_pred HHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEE
Q 021239 75 SQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (315)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i 154 (315)
.|+..+++-....++.+|+.+.+... +..+..+.. + +.+..+.|+||+|+|||+|+..++..+...|.++.|+
T Consensus 7 ~Ql~l~~~~~~~~~fd~f~~~~n~~a----~~~l~~~~~-~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 7 AQLSLPLYLPDDETFASFYPGDNDSL----LAALQNALR-Q--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred cceecCCCCCCcCCccccccCccHHH----HHHHHHHHh-C--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 36666666665666666654322221 244555443 1 2345899999999999999999998888888999999
Q ss_pred ecCC
Q 021239 155 DVEN 158 (315)
Q Consensus 155 ~~E~ 158 (315)
+.+.
T Consensus 80 ~~~~ 83 (235)
T PRK08084 80 PLDK 83 (235)
T ss_pred EHHH
Confidence 9753
No 94
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.44 E-value=3.7e-06 Score=72.28 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=75.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec-CCCCCh-HHHHHcCCCCCCeEEeCCCCHHHH-------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV-ENALDP-SLAEAMGIDAENLLIAQPDSAENL------- 186 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~-E~~~~~-~~~~~~g~~~~~l~i~~~~~~e~~------- 186 (315)
-.+.|+++.|.||+|+||||++.-++.-.....++| +++. +-...+ ...+.+|+.....-++...++++.
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L 102 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL 102 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence 467899999999999999999987776666555544 5554 333333 344556655443222222222211
Q ss_pred ---------------------------------------HHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHH
Q 021239 187 ---------------------------------------LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDA 227 (315)
Q Consensus 187 ---------------------------------------~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~ 227 (315)
+.+.+.+ -++|+++|+|....=. +-.
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAl--vh~P~i~vlDEP~sGL-------------Di~ 167 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARAL--VHDPSILVLDEPTSGL-------------DIR 167 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHH--hcCCCeEEEcCCCCCc-------------cHH
Confidence 1111122 2578999999654322 112
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 228 QSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 228 q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
..+.+.++++++ +..|-+||+.+|....+
T Consensus 168 ~~r~~~dfi~q~----k~egr~viFSSH~m~Ev 196 (245)
T COG4555 168 TRRKFHDFIKQL----KNEGRAVIFSSHIMQEV 196 (245)
T ss_pred HHHHHHHHHHHh----hcCCcEEEEecccHHHH
Confidence 233444555554 77899999999998877
No 95
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.42 E-value=4.1e-07 Score=85.21 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~ 183 (315)
-+++|+++.|.||+||||||++..+|.-....++.+.+-.-+-+.-+...+.+|+.+++.-+++..+.
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 57899999999999999999999888777666666543333333333445667777776555544433
No 96
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=98.42 E-value=2.3e-06 Score=74.01 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChHHHHH-c-----CCCC-------------
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSLAEA-M-----GIDA------------- 172 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~~~~~-~-----g~~~------------- 172 (315)
..|++++|.||.++|||.+..|+++.+.. .+..|+|++++..++..+... + ..+.
T Consensus 36 daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~ 115 (293)
T KOG2859|consen 36 DAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQ 115 (293)
T ss_pred ccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhH
Confidence 36899999999999999999999988764 235799999999998743211 1 1111
Q ss_pred ---------CCeEEeCCCCHHHHHHHHH---HH-HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHH
Q 021239 173 ---------ENLLIAQPDSAENLLSVVD---TL-TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (315)
Q Consensus 173 ---------~~l~i~~~~~~e~~~~~i~---~l-~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L 239 (315)
.++.+..+....++...+. .. +.+.+..++++||+.+++..++...- + ....+.+.+......|
T Consensus 116 ~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~l--e-~~n~~~~~lr~~~q~L 192 (293)
T KOG2859|consen 116 LEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKIL--E-KRNSMYRHLRLLQQRL 192 (293)
T ss_pred HHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchH--h-hhhhHHHHHHHHHHHH
Confidence 1334444443344333322 22 34556899999999999865444331 1 1112333333444455
Q ss_pred HHHHhccCcEEEEEeccc
Q 021239 240 HYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 240 ~~~~~~~~i~VI~inq~~ 257 (315)
.++++.+-..++.+.+..
T Consensus 193 eKL~~d~~lv~~aT~~ti 210 (293)
T KOG2859|consen 193 EKLCKDAILVGMATVETI 210 (293)
T ss_pred HHHHhhheeeeeeehhHH
Confidence 555677777777777654
No 97
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.42 E-value=1e-06 Score=75.44 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=49.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHc
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~ 196 (315)
+..+.-++|+|++|+|||+||..++.++...|.+|.|++..+ +...+... ......++. +..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~-----L~~~l~~~------~~~~~~~~~---~~~l--- 106 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD-----LLDELKQS------RSDGSYEEL---LKRL--- 106 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH-----HHHHHHCC------HCCTTHCHH---HHHH---
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc-----eecccccc------ccccchhhh---cCcc---
Confidence 456778999999999999999999999999999999998533 22222110 011222333 3333
Q ss_pred CCccEEeehhHhhh
Q 021239 197 GSIDVIVVDSVAAL 210 (315)
Q Consensus 197 ~~~~lVVIDsl~~l 210 (315)
.+++++|||.+...
T Consensus 107 ~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 107 KRVDLLILDDLGYE 120 (178)
T ss_dssp HTSSCEEEETCTSS
T ss_pred ccccEeccccccee
Confidence 26899999998744
No 98
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=1.5e-06 Score=77.53 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 36799999999999999999999888765444455433
No 99
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.40 E-value=2.3e-06 Score=74.31 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=41.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---h-HHHHHcCCCCCCeEEeC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---P-SLAEAMGIDAENLLIAQ 179 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~-~~~~~~g~~~~~l~i~~ 179 (315)
-+.+|+++.|+||+|||||||+..+..--...+ .-++++.+.... . ...+..|+..+++.+++
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~-G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS-GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC-ceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 367999999999999999999987644333333 345676643322 1 34556788777655443
No 100
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=1.4e-06 Score=73.89 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=72.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC---ChHHHHHcCCCCCCeEEeCCCCHHHH-------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---DPSLAEAMGIDAENLLIAQPDSAENL------- 186 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~---~~~~~~~~g~~~~~l~i~~~~~~e~~------- 186 (315)
+++|+++.|.||+|+|||||+..++.......+.+. ++.+... ...+.+.+++-+++..+.+ .+..+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~ 102 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQR 102 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHHH
Confidence 679999999999999999999888877655556654 4443211 1123344555444433332 233221
Q ss_pred --HHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 187 --LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 187 --~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+.+.+.++ .+|+++++|....-... .....+.+.++.+ .+ +.++|+++|.....
T Consensus 103 ~rl~la~al~--~~p~llllDEP~~gLD~-------------~~~~~l~~~l~~~----~~-~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALL--RDPPILILDEATSALDP-------------ETEALILEALRAL----AK-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHh--cCCCEEEEECCCcCCCH-------------HHHHHHHHHHHHh----cC-CCEEEEEecCHHHH
Confidence 22333333 47899999977654410 1122344444444 23 58999999876544
No 101
>PRK06526 transposase; Provisional
Probab=98.39 E-value=1.6e-06 Score=78.39 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=35.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+..+..++|+||||+|||+++..++..++..|.+|+|++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4467789999999999999999999999999999988764
No 102
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.39 E-value=1.5e-06 Score=74.32 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=67.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHH-HHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE-NLLSVVDTLTK 195 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e-~~~~~i~~l~~ 195 (315)
+++|+++.|.||+|+|||||+..++......++.+.|-.. .+++.+++.. ....+ +.+...+.++
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------~i~~~~q~~~---LSgGq~qrv~laral~- 87 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------TPVYKPQYID---LSGGELQRVAIAAALL- 87 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------EEEEEcccCC---CCHHHHHHHHHHHHHh-
Confidence 6899999999999999999998887766555566544221 0111111111 11122 3344444444
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.+++++++|....-... ...+.+.+.++++. ++.+.+||+++|.....
T Consensus 88 -~~p~lllLDEPts~LD~-------------~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 88 -RNATFYLFDEPSAYLDI-------------EQRLNAARAIRRLS---EEGKKTALVVEHDLAVL 135 (177)
T ss_pred -cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHHH---HcCCCEEEEEECCHHHH
Confidence 47899999977655421 11223444454442 44458999999986554
No 103
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=1.5e-06 Score=76.14 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+.+|+++.|.||+|+|||||+..++.......+.+
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i 55 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 367999999999999999999988876654444444
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=1.5e-06 Score=76.27 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 3679999999999999999999888766544444443
No 105
>PRK08181 transposase; Validated
Probab=98.39 E-value=2.5e-06 Score=77.64 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=52.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
..+..++|+||||+|||+|+..++..+...|.+|+|++..+ ....+... ....+.++. +..+ .
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~-----L~~~l~~a------~~~~~~~~~---l~~l---~ 166 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----LVQKLQVA------RRELQLESA---IAKL---D 166 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH-----HHHHHHHH------HhCCcHHHH---HHHH---h
Confidence 46778999999999999999999999998999999998532 11111000 001122222 2222 3
Q ss_pred CccEEeehhHhhhc
Q 021239 198 SIDVIVVDSVAALI 211 (315)
Q Consensus 198 ~~~lVVIDsl~~l~ 211 (315)
+++++|||.+....
T Consensus 167 ~~dLLIIDDlg~~~ 180 (269)
T PRK08181 167 KFDLLILDDLAYVT 180 (269)
T ss_pred cCCEEEEecccccc
Confidence 68999999997654
No 106
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=77.58 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHH-----------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE----------- 184 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e----------- 184 (315)
-+++|.+..+.|++|+||||....+..-.-...+.+-|...+- ....-.++|+-+++--+++..+.+
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~--~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG 101 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL--SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch--hhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence 3679999999999999999998776655544455665555322 223344555544422211111111
Q ss_pred -----------------------------------HHHHHHHHHHHcCCccEEeehh-HhhhccccccCCCccCCChHHH
Q 021239 185 -----------------------------------NLLSVVDTLTKSGSIDVIVVDS-VAALIPKCEIGVPINGMYSDAQ 228 (315)
Q Consensus 185 -----------------------------------~~~~~i~~l~~~~~~~lVVIDs-l~~l~~~~~~~~~~~~~~~~~q 228 (315)
+-++.+..+ -+.|++||+|. ++.+-| ..
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisav--iHePeLlILDEPFSGLDP--------------VN 165 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLDP--------------VN 165 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHH--hcCCCEEEecCCccCCCh--------------hh
Confidence 111222222 26799999994 344432 22
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 229 ~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.+ .|+....-.++.|.|||+.+|.+..+
T Consensus 166 ~e----lLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 166 VE----LLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred HH----HHHHHHHHHHhcCCEEEEecchHHHH
Confidence 22 34444444488999999999998876
No 107
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.38 E-value=1.2e-06 Score=76.79 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++......++.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~ 58 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3679999999999999999999888876544444443
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.38 E-value=2.7e-06 Score=68.05 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=64.6
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC-ccE
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS-IDV 201 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~-~~l 201 (315)
++|+||||+|||+++..++... +.+++.++...-... ........+...+.+ +.... +.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~-~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKK-AKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHH-HHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc---------------ccccccccccccccc-cccccccee
Confidence 5799999999999999988776 566777775332110 011112233344444 33344 899
Q ss_pred EeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecccccc
Q 021239 202 IVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ-SHTLIIFLNQVRFSA 260 (315)
Q Consensus 202 VVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~-~~i~VI~inq~~~~~ 260 (315)
++||.+..+.+.. ... ......+.+...+..+...... .++.||++++..+.+
T Consensus 62 l~iDe~d~l~~~~--~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 62 LFIDEIDKLFPKS--QPS----SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp EEEETGGGTSHHC--STS----SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred eeeccchhccccc--ccc----cccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 9999999998533 111 1112222233333334322222 457888888775555
No 109
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.38 E-value=1.7e-06 Score=75.88 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 56 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 679999999999999999999999877655455443
No 110
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.37 E-value=2e-06 Score=75.59 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 46799999999999999999999888765545555543
No 111
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.37 E-value=1.7e-06 Score=74.96 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=71.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH--HhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHH------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLL------ 187 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~--~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~------ 187 (315)
-+++|+++.|.|++|+|||||+..++... ....+.+. ++.+........+.+++.+++..+....+..+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL-INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE-ECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 36799999999999999999999888766 54455554 4433222112233455544443332222332221
Q ss_pred -----------HHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 188 -----------SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 188 -----------~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
.+.+.++ .+++++++|....-... ...+.+.+.++++ .+.+.++|+++|-
T Consensus 110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~-------------~~~~~l~~~l~~~----~~~~~tiii~sh~ 170 (194)
T cd03213 110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDS-------------SSALQVMSLLRRL----ADTGRTIICSIHQ 170 (194)
T ss_pred ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEecC
Confidence 2222222 47899999977654410 1122344555544 3348999999987
Q ss_pred cc
Q 021239 257 RF 258 (315)
Q Consensus 257 ~~ 258 (315)
..
T Consensus 171 ~~ 172 (194)
T cd03213 171 PS 172 (194)
T ss_pred ch
Confidence 53
No 112
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=7.5e-07 Score=76.24 Aligned_cols=54 Identities=31% Similarity=0.434 Sum_probs=36.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec-C--CCCChHHHHHcCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV-E--NALDPSLAEAMGI 170 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~-E--~~~~~~~~~~~g~ 170 (315)
-+|+|.++.|.||+|+|||||...++.-.....+ .++++. | .......|+.+.+
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHHHHHHHH
Confidence 4789999999999999999998655544444444 455553 3 3334466666543
No 113
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.37 E-value=5.6e-06 Score=70.12 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=55.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCCeEEe---CCCCHHHHHHHHHHHHHc
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENLLIA---QPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~l~i~---~~~~~e~~~~~i~~l~~~ 196 (315)
++.+.|+||+||||++..++..+...|.++++++++..... .....+.. ..++.+. ...+..++..........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGE-QVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcc-cCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999888899999998865432 11221111 1122222 223344444322222344
Q ss_pred CCccEEeehhHhhh
Q 021239 197 GSIDVIVVDSVAAL 210 (315)
Q Consensus 197 ~~~~lVVIDsl~~l 210 (315)
.+.++|+||.....
T Consensus 81 ~~~d~viiDt~g~~ 94 (173)
T cd03115 81 ENFDVVIVDTAGRL 94 (173)
T ss_pred CCCCEEEEECcccc
Confidence 67899999986644
No 114
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=3.5e-06 Score=67.72 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=52.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHH-cCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA-MGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~-~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
.+..+.|+|+||+|||+++..++......+.+++|++............ .... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence 4678999999999999999999998877778888888655433211110 0000 111112222345
Q ss_pred CccEEeehhHhhhc
Q 021239 198 SIDVIVVDSVAALI 211 (315)
Q Consensus 198 ~~~lVVIDsl~~l~ 211 (315)
...++++|.+..+.
T Consensus 84 ~~~~lilDe~~~~~ 97 (151)
T cd00009 84 KPGVLFIDEIDSLS 97 (151)
T ss_pred CCeEEEEeChhhhh
Confidence 68999999998773
No 115
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.37 E-value=2.5e-06 Score=76.33 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 5799999999999999999998887665444555543
No 116
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.37 E-value=8.9e-06 Score=74.43 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=90.3
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc------CCeEEEEecCCCCCh-----HHHHHcCCCC
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP-----SLAEAMGIDA 172 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~------g~~v~~i~~E~~~~~-----~~~~~~g~~~ 172 (315)
.+..|.+++....-.+--..+|+|+++.|||+++..++...... .-+|+++..-..++. .....+|...
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34566666652333344569999999999999999998765421 136888887655554 3456677653
Q ss_pred CCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEE
Q 021239 173 ENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIF 252 (315)
Q Consensus 173 ~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~ 252 (315)
. ...+..+....+.++++..+++++|||.+..+.... ..+++++...|+.| ..+..+++|.
T Consensus 125 ~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L---~NeL~ipiV~ 185 (302)
T PF05621_consen 125 R-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFL---GNELQIPIVG 185 (302)
T ss_pred C-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHH---hhccCCCeEE
Confidence 2 233455666666677788899999999999887311 14566566666655 4899999998
Q ss_pred Ee
Q 021239 253 LN 254 (315)
Q Consensus 253 in 254 (315)
+-
T Consensus 186 vG 187 (302)
T PF05621_consen 186 VG 187 (302)
T ss_pred ec
Confidence 75
No 117
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.36 E-value=2e-06 Score=79.72 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 52 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV 52 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 46799999999999999999998887765545555544
No 118
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=4.2e-06 Score=75.90 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=36.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++.|..+.|+||||+|||+|+..++..+...|.+|.|++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 6789999999999999999999998888888999999874
No 119
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.35 E-value=3.3e-06 Score=72.20 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--Ch-HH----------HHHcCCCCC-CeEEeCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-SL----------AEAMGIDAE-NLLIAQPD 181 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~~-~~----------~~~~g~~~~-~l~i~~~~ 181 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+. ++.+... .. .+ ++.+|+... +-.+....
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL-LDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4679999999999999999999888876655556654 4432211 11 12 223333210 00111112
Q ss_pred CHH-HHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 182 SAE-NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 182 ~~e-~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
..+ +-+.+.+.++ .+|+++++|....-... .....+.+.++.++ ++.+.++|+++|-....
T Consensus 100 ~G~~qrl~laral~--~~p~llllDEP~~~LD~-------------~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALA--QEPPILLLDEPTSHLDI-------------AHQIELLELLRRLA---RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 222 3344444444 47899999977655410 11223445555443 45589999999986554
No 120
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.35 E-value=5.1e-06 Score=72.16 Aligned_cols=87 Identities=15% Similarity=0.241 Sum_probs=58.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCH-HHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSA-ENLLSVVDTL 193 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~-e~~~~~i~~l 193 (315)
.++.+.||+|+||||.+..+|+....++.+|.+++++....- .+++.+|++... .....+. +.+.+.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~--~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV--ARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE--SSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch--hhcchhhHHHHHHHHHHH
Confidence 478999999999999999999999988999999998766542 356667654211 1111223 3333444443
Q ss_pred HHcCCccEEeehhHhhh
Q 021239 194 TKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l 210 (315)
...+.++|+||+....
T Consensus 80 -~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 80 -RKKGYDLVLIDTAGRS 95 (196)
T ss_dssp -HHTTSSEEEEEE-SSS
T ss_pred -hhcCCCEEEEecCCcc
Confidence 4457899999986533
No 121
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=2.7e-06 Score=75.78 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 6799999999999999999999888665444455543
No 122
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.35 E-value=2.4e-06 Score=73.13 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=73.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---h-HHHHHcCCCCCCe---EEeCCCCHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---P-SLAEAMGIDAENL---LIAQPDSAENLLS 188 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~-~~~~~~g~~~~~l---~i~~~~~~e~~~~ 188 (315)
-+++|+++.|.|++|+|||||+..++.......+.+. ++.+.... . .+.+.+++.+++. .+....+..+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 4679999999999999999999888877655555554 44322111 1 2233455544432 2222223333221
Q ss_pred --------------HHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 021239 189 --------------VVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLN 254 (315)
Q Consensus 189 --------------~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~in 254 (315)
+.+.+ -.+++++++|....-... ...+.+.+.++.+ .+.+.++|+++
T Consensus 101 ~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~-------------~~~~~l~~~l~~~----~~~~~tiii~s 161 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDV-------------GAKAEIYRLIREL----ADAGKAVLLIS 161 (182)
T ss_pred HHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEe
Confidence 12222 247899999977655410 2223355555554 33489999999
Q ss_pred cccccc
Q 021239 255 QVRFSA 260 (315)
Q Consensus 255 q~~~~~ 260 (315)
|-....
T Consensus 162 h~~~~~ 167 (182)
T cd03215 162 SELDEL 167 (182)
T ss_pred CCHHHH
Confidence 976544
No 123
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.35 E-value=3.2e-06 Score=74.33 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 36799999999999999999998888765545555543
No 124
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=9e-07 Score=81.90 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
=|+.|-.=+++|||||+|||.||..+|... .+.||-.-. .+..+.+ ......++.-+-++.
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvg---SElVqKY-----------iGEGaRlVRelF~lA 240 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVG---SELVQKY-----------IGEGARLVRELFELA 240 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEecc---HHHHHHH-----------hccchHHHHHHHHHH
Confidence 478888889999999999999998776554 344444211 1111111 112334455555566
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
+.+.|.+|+||.+.++-. ..++...+.. ..-+|.+.+.|.++-.+=..-|+-||+-+.--+-
T Consensus 241 rekaPsIIFiDEIDAIg~-kR~d~~t~gD--rEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 241 REKAPSIIFIDEIDAIGA-KRFDSGTSGD--REVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred hhcCCeEEEEechhhhhc-ccccCCCCch--HHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 778999999999999973 4554433221 1223445555555544434567888765554333
No 125
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.34 E-value=3.4e-06 Score=74.97 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV 64 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 36799999999999999999999888766555555543
No 126
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.34 E-value=1.8e-06 Score=77.16 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 367999999999999999999999887654444444
No 127
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=2.3e-06 Score=74.94 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=34.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+++|+++.+.|++|+||||++..++.......+.+.|-.-+
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~d 66 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGED 66 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCee
Confidence 56999999999999999999999988777666777665433
No 128
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=2.2e-06 Score=76.17 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 57 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4679999999999999999999988876655455543
No 129
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=3.8e-06 Score=74.06 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 58 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3679999999999999999999988776544444543
No 130
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.33 E-value=1.8e-06 Score=81.76 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE
Confidence 568999999999999999999888876554444443
No 131
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=5.4e-06 Score=73.41 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=53.7
Q ss_pred HHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEE
Q 021239 75 SQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (315)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i 154 (315)
.||..+|...+..++.+|..+.+... +..+..+.. |...+..+.|+|++|+|||+|+..++..+...+..+.|+
T Consensus 3 ~ql~~~~~~~~~~~~d~f~~~~~~~~----~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i 76 (227)
T PRK08903 3 RQLTLDLGPPPPPTFDNFVAGENAEL----VARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYL 76 (227)
T ss_pred cccccCCCCCChhhhcccccCCcHHH----HHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 36666777776677776542222211 123333333 345677899999999999999999999888888899999
Q ss_pred ecC
Q 021239 155 DVE 157 (315)
Q Consensus 155 ~~E 157 (315)
+..
T Consensus 77 ~~~ 79 (227)
T PRK08903 77 DAA 79 (227)
T ss_pred ehH
Confidence 853
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.33 E-value=1.3e-05 Score=70.80 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=64.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh--cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~--~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
...+.|+|++|+|||+|+..++..+.+ .+.+|+|++.+.-... .+..+ .....+++.+.+ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~----------~~~~~~~~~~~~------~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADAL----------RDGEIEEFKDRL------R 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHH----------HTTSHHHHHHHH------C
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHH----------Hcccchhhhhhh------h
Confidence 346789999999999999999888775 4778999995421111 11100 001122222222 3
Q ss_pred CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
..++++||-++.+... + ...+.+..+.+...+.|..+|+++...
T Consensus 97 ~~DlL~iDDi~~l~~~--------------~--~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK--------------Q--RTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp TSSEEEEETGGGGTTH--------------H--HHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred cCCEEEEecchhhcCc--------------h--HHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 6899999999887631 1 022344455555577788888888664
No 133
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=1.7e-06 Score=82.00 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
-+++|+++.|.||+|+|||||+..++.......+.+ +++.
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g 65 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGG 65 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECC
Confidence 367999999999999999999988887655444444 3443
No 134
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.31 E-value=2.1e-06 Score=80.86 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i 100 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEE
Confidence 6799999999999999999999888766555555544
No 135
>PRK12377 putative replication protein; Provisional
Probab=98.30 E-value=6.4e-06 Score=74.07 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=50.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCcc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~ 200 (315)
..++|+|+||+|||+|+..++..+...|..|+|++..+-..... ..+ + ...+.+ ..+..+ ..++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~-~~~--~-------~~~~~~---~~l~~l---~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH-ESY--D-------NGQSGE---KFLQEL---CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH-HHH--h-------ccchHH---HHHHHh---cCCC
Confidence 57899999999999999999999998899999998643222111 111 0 001112 223332 4789
Q ss_pred EEeehhHhhhc
Q 021239 201 VIVVDSVAALI 211 (315)
Q Consensus 201 lVVIDsl~~l~ 211 (315)
++|||.+....
T Consensus 166 LLiIDDlg~~~ 176 (248)
T PRK12377 166 LLVLDEIGIQR 176 (248)
T ss_pred EEEEcCCCCCC
Confidence 99999997553
No 136
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.30 E-value=4.5e-06 Score=72.84 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 58 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 569999999999999999999988776544444443
No 137
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=4e-06 Score=72.46 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHH-----
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLS----- 188 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~----- 188 (315)
-+.+|+++.|.|++|+|||||+..++.... ...+.+ +++.+.-. ..+.+.+++..++..+....+..+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 367999999999999999999998875431 223343 44433211 222334555444332322223333222
Q ss_pred ------------HHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 189 ------------VVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 189 ------------~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
+.+.+ -.+++++++|....-... .....+.+.++++ .+.+.++|+++|-
T Consensus 107 ~~LSgGe~qrv~la~al--~~~p~vlllDEP~~~LD~-------------~~~~~l~~~l~~~----~~~~~tiiivtH~ 167 (192)
T cd03232 107 RGLSVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDS-------------QAAYNIVRFLKKL----ADSGQAILCTIHQ 167 (192)
T ss_pred hcCCHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCH-------------HHHHHHHHHHHHH----HHcCCEEEEEEcC
Confidence 12222 247899999977655420 1122344455544 3358999999987
Q ss_pred cc
Q 021239 257 RF 258 (315)
Q Consensus 257 ~~ 258 (315)
..
T Consensus 168 ~~ 169 (192)
T cd03232 168 PS 169 (192)
T ss_pred Ch
Confidence 54
No 138
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.29 E-value=2.7e-06 Score=81.05 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~ 61 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 668999999999999999999888866544444443
No 139
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.28 E-value=3.8e-06 Score=74.00 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 46799999999999999999999988765545555543
No 140
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.28 E-value=5.7e-06 Score=73.05 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+.+|+...|.|++||||||++..++.-.....+. ++++.
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~-I~~~G 68 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDG 68 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce-EEECC
Confidence 6799999999999999999998887655443333 34443
No 141
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.28 E-value=3.8e-06 Score=80.14 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+.+|+++.|.||+|+|||||+..++.......+.+
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I 71 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 367899999999999999999988887554444444
No 142
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=2.9e-06 Score=80.27 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I 63 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence 367899999999999999999988876655444443
No 143
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.28 E-value=7e-06 Score=76.84 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=51.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCc
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~ 199 (315)
+..++|+|++|+|||+|+..+|..+...|..|+|++..+-........+ .. ..+....+..+ ..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~----------~~--~~~~~~~~~~l---~~~ 247 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF----------NN--DKELEEVYDLL---INC 247 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh----------cc--chhHHHHHHHh---ccC
Confidence 4679999999999999999999999999999999996442222111111 00 01111112222 368
Q ss_pred cEEeehhHhhhc
Q 021239 200 DVIVVDSVAALI 211 (315)
Q Consensus 200 ~lVVIDsl~~l~ 211 (315)
+++|||-+....
T Consensus 248 DLLIIDDlG~e~ 259 (329)
T PRK06835 248 DLLIIDDLGTEK 259 (329)
T ss_pred CEEEEeccCCCC
Confidence 999999997654
No 144
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.28 E-value=3.5e-06 Score=71.83 Aligned_cols=123 Identities=15% Similarity=0.237 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--ChHHHHHcCCCCCCeEEeCCCCHH---------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DPSLAEAMGIDAENLLIAQPDSAE--------- 184 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~~~~~~~~g~~~~~l~i~~~~~~e--------- 184 (315)
-+++|+++.|.|++|+|||||+..++.......+.+. ++..... ...+.+.+++.+++..+.. .+..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT-LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence 4679999999999999999999998877655555654 4432111 1122344555444433332 1221
Q ss_pred ---HHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 185 ---NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 185 ---~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+.+.+.+.++ .+|+++++|....-... ...+.+.+.++.+ .+ +.+||+++|-....
T Consensus 102 G~~qrv~laral~--~~p~~lllDEP~~~LD~-------------~~~~~l~~~l~~~----~~-~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILL--QDAPIVLLDEPTVGLDP-------------ITERQLLSLIFEV----LK-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHH----cC-CCEEEEEecCHHHH
Confidence 1223333333 47899999987755421 1122344444444 33 78999999876543
No 145
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.27 E-value=1.7e-05 Score=72.34 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEe-CCCCHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIA-QPDSAENLLSVVD 191 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~-~~~~~e~~~~~i~ 191 (315)
++.++.++|++|+||||++..+|..+...|.+|++++.+..... .+++..|+..- ... ..++.......+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence 46789999999999999999999999888999999998853221 24555553210 001 1222232333343
Q ss_pred HHHHcCCccEEeehhHhhhc
Q 021239 192 TLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~ 211 (315)
.. ...+.++|+||.-....
T Consensus 149 ~~-~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 149 KA-KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HH-HHCCCCEEEEeCCCCCc
Confidence 33 34578999999877554
No 146
>PRK10867 signal recognition particle protein; Provisional
Probab=98.27 E-value=9.1e-06 Score=78.63 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=62.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
..++.++|++|+||||++..+|..+... |.+|++++++..... .+++..|++.-. .....++.++.....+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~--~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP--SGDGQDPVDIAKAALE 177 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe--cCCCCCHHHHHHHHHH
Confidence 4789999999999999999999998888 899999999865443 134555544210 1112344555543334
Q ss_pred HHHcCCccEEeehhHhhhc
Q 021239 193 LTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~l~ 211 (315)
.....++++|+||.-..+.
T Consensus 178 ~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHhcCCCEEEEeCCCCcc
Confidence 4455679999999877543
No 147
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.27 E-value=3.2e-06 Score=80.32 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcC--CeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g--~~v~~i~~ 156 (315)
+++|+++.|.||+|+|||||+..++....... +.+ +++.
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g 68 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIAD 68 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECC
Confidence 67899999999999999999988887554444 444 4443
No 148
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=6.1e-06 Score=66.51 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=65.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCc
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~ 199 (315)
+.+++|.||.|+||||++.+++.... ...+++|++++......... .+ +.+.+.+.. ..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~-~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELI-KPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhh-ccCC
Confidence 57899999999999999999998876 56789999987644321100 00 223333332 1267
Q ss_pred cEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhcc-CcEEEEEecccccc
Q 021239 200 DVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQS-HTLIIFLNQVRFSA 260 (315)
Q Consensus 200 ~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~-~i~VI~inq~~~~~ 260 (315)
.+|+||.++.+-. ....++.+. .+. ++.++++.......
T Consensus 63 ~~i~iDEiq~~~~-------------------~~~~lk~l~---d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 63 KYIFIDEIQYLPD-------------------WEDALKFLV---DNGPNIKIILTGSSSSLL 102 (128)
T ss_pred cEEEEehhhhhcc-------------------HHHHHHHHH---HhccCceEEEEccchHHH
Confidence 8999999997741 234444444 343 78888887765544
No 149
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.1e-05 Score=67.87 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=38.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
+.||++..|.|++|+|||||...++.......+.+.|..-...+
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP 72 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCc
Confidence 56999999999999999999999998888888889888765544
No 150
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.26 E-value=7.7e-06 Score=71.05 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+.+|+++.|.|++|+|||||+..++.......+. ++++.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~ 63 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQ 63 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee-EEECCC
Confidence 5699999999999999999998877655444444 445543
No 151
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=4.7e-06 Score=74.11 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 66 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 367999999999999999999988887654444444
No 152
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.26 E-value=5e-06 Score=73.66 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 68 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence 569999999999999999999988876544445543
No 153
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.26 E-value=4.8e-06 Score=79.95 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|++++.-++|+||||+|||+++..+|.... ...+.+.. ......+ ....+..+..+-...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~-----s~l~~k~-----------~ge~~~~lr~lf~~A 234 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVG-----SEFVQKY-----------LGEGPRMVRDVFRLA 234 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEeh-----HHHHHHh-----------cchhHHHHHHHHHHH
Confidence 4788889999999999999999999877642 22222221 1111110 011122222222334
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
....+.+|+||.+..+... ..+...+ ......+.+.+.+..+..+-...++.||++++--+.+
T Consensus 235 ~~~~P~ILfIDEID~i~~~-r~~~~~~--~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATK-RFDAQTG--ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcCCeEEEEECHhhhccc-cccccCC--ccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 4568899999999998742 2221111 1112223345555555433334577777776644444
No 154
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=3.8e-06 Score=76.95 Aligned_cols=38 Identities=29% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~ 66 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 46799999999999999999998887766555555544
No 155
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=6.4e-06 Score=73.96 Aligned_cols=127 Identities=16% Similarity=0.227 Sum_probs=79.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--Ch-------HHHHHcCCCCCCeEEe-CCCC--H
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-------SLAEAMGIDAENLLIA-QPDS--A 183 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~~-------~~~~~~g~~~~~l~i~-~~~~--~ 183 (315)
-+.+|++..|.|++||||||++..++.-....++.+.|=.-+-.. .. +..+..|...+.+.-+ ...+ .
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 477999999999999999999988877666566665543322111 11 2344556444332211 1112 1
Q ss_pred HHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 184 ENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 184 e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.+-+.+.+.++ .+|+++|.|.......- ..|+. +...|+.+. ++.|++.++++|.-..+
T Consensus 115 rQRi~IARALa--l~P~liV~DEpvSaLDv------------Siqaq-IlnLL~dlq---~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 115 RQRIGIARALA--LNPKLIVADEPVSALDV------------SVQAQ-ILNLLKDLQ---EELGLTYLFISHDLSVV 173 (268)
T ss_pred hhhHHHHHHHh--hCCcEEEecCchhhcch------------hHHHH-HHHHHHHHH---HHhCCeEEEEEEEHHhh
Confidence 23344445443 47999999988776621 13333 556666666 88999999999976554
No 156
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=7e-06 Score=74.85 Aligned_cols=136 Identities=15% Similarity=0.239 Sum_probs=81.1
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC----h--HHHHHcCCCCCCeEE
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD----P--SLAEAMGIDAENLLI 177 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~----~--~~~~~~g~~~~~l~i 177 (315)
.+..||..-- -+++|+++.|.|.+|+|||||...+-.--....+++. ++.++-.. . ...+.+|+-++++.+
T Consensus 18 ~~~al~~vsL--~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~-v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSL--EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF-VDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceE--EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-EcCEecccCChHHHHHHHhhccEEeccccc
Confidence 3555665433 5889999999999999999999765333333455554 44432221 1 234456766654432
Q ss_pred eCCC---------------CHHHH-------------------------------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 178 AQPD---------------SAENL-------------------------------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 178 ~~~~---------------~~e~~-------------------------------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.... +-++. +.+.+.+ ..+|+++..|..++..
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL--a~~P~iLL~DEaTSAL 172 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL--ANNPKILLCDEATSAL 172 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH--hcCCCEEEecCccccC
Confidence 2211 11111 2222222 2578899999877655
Q ss_pred cccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 212 PKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 212 ~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
. + .-.+.+.+.|+.+. +++|+||++++|-++.+
T Consensus 173 D-------P------~TT~sIL~LL~~In---~~lglTIvlITHEm~Vv 205 (339)
T COG1135 173 D-------P------ETTQSILELLKDIN---RELGLTIVLITHEMEVV 205 (339)
T ss_pred C-------h------HHHHHHHHHHHHHH---HHcCCEEEEEechHHHH
Confidence 2 1 22334666677776 89999999999987654
No 157
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.25 E-value=3.7e-06 Score=79.62 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.||+|+|||||+..++.......+.+.
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 60 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 568999999999999999999988876554445543
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.25 E-value=1.1e-05 Score=78.19 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+.++.-++|+||||+|||+++..++.... ...+.+...+ ....+ ....+..+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~se-----L~~k~-----------~Ge~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSE-----LIQKY-----------LGDGPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecch-----hhhhh-----------cchHHHHHHHHHHHHH
Confidence 677888899999999999999999987653 2222222111 00000 0111222332323344
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+|+||.+..+... ......+.. ....+.+.+.+..+..+....++.||++++-...+
T Consensus 274 ~~~P~ILfIDEID~l~~k-R~~~~sgg~--~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTK-RYDATSGGE--KEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hCCCcEEeHHHHHHHhcc-CCCCCCccc--HHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 567899999999988742 211111111 12233455556555444445678888777644443
No 159
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.25 E-value=4.7e-06 Score=73.18 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3679999999999999999999888876544445543
No 160
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.25 E-value=4.1e-06 Score=79.30 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~ 56 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV 56 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 579999999999999999999888776544444543
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.25 E-value=5.2e-06 Score=68.81 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=28.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
-+.|+|+||+||||+++.++..+...|-+|.=|-
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 4789999999999999999988887766655333
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=5.4e-06 Score=73.73 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~ 58 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 569999999999999999999998877665555543
No 163
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.24 E-value=3.7e-06 Score=81.85 Aligned_cols=135 Identities=20% Similarity=0.302 Sum_probs=81.6
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--ChHHHHHcCCCC---------
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DPSLAEAMGIDA--------- 172 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~~~~~~~~g~~~--------- 172 (315)
|+..||..-= -+.+|+++.|.|++|+|||||+..++..+....+. ++++.+... .+.-++..|+..
T Consensus 20 gV~AL~~v~l--~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred Cceeecccee--EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 4455554432 46799999999999999999999988877765543 445543221 223344444310
Q ss_pred -----CCeEEeC------------------------------CCC--------HHHHHHHHHHHHHcCCccEEeehhHhh
Q 021239 173 -----ENLLIAQ------------------------------PDS--------AENLLSVVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 173 -----~~l~i~~------------------------------~~~--------~e~~~~~i~~l~~~~~~~lVVIDsl~~ 209 (315)
+|+++-+ ++. ..+++++.+.+. .+++++|+|..++
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~--~~arllIlDEPTa 174 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS--FDARVLILDEPTA 174 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh--cCCCEEEEcCCcc
Confidence 1221111 110 113444444443 3788999998887
Q ss_pred hccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 210 LIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 210 l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.... .....+.+.+++| ++.|+++|+|+|-...+
T Consensus 175 aLt~-------------~E~~~Lf~~ir~L----k~~Gv~ii~ISHrl~Ei 208 (500)
T COG1129 175 ALTV-------------KETERLFDLIRRL----KAQGVAIIYISHRLDEV 208 (500)
T ss_pred cCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEcCcHHHH
Confidence 7642 2333455555555 78999999999975553
No 164
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=3.3e-06 Score=74.43 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 61 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 367999999999999999999988876544334443
No 165
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.24 E-value=4.5e-06 Score=75.58 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i 69 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 367999999999999999999998887654444444
No 166
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=7.6e-06 Score=68.19 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---hHHHHHcCCCCCCeEEeCCCCHH-HHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAE-NLLSVVDT 192 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~~~~~~~g~~~~~l~i~~~~~~e-~~~~~i~~ 192 (315)
+++|+++.|.|++|+|||||+..++...-...+.+ +++.+.... ..+...+++.+ +-...+ +.+.+.+.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~------qlS~G~~~r~~l~~~ 94 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELRRRIGYVP------QLSGGQRQRVALARA 94 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHHhceEEEe------eCCHHHHHHHHHHHH
Confidence 56899999999999999999998877654444444 555433221 11222222222 222233 22333444
Q ss_pred HHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 193 LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
++ .+++++++|....-... .....+.+.++.+. .. +.++++++|.....
T Consensus 95 l~--~~~~i~ilDEp~~~lD~-------------~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 95 LL--LNPDLLLLDEPTSGLDP-------------ASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred Hh--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 43 36899999977755420 11222444444442 33 78999999986554
No 167
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.24 E-value=7.2e-06 Score=75.27 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=58.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhc-C-CeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-G-GYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSV 189 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g-~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~ 189 (315)
+.+.++.|+||+|+||||++..++..+... | .+|.+++++..... .+++.+|++. ....+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~-----~~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV-----KVARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce-----eccCCHHHHHHH
Confidence 467899999999999999999999988876 4 79999998864321 2344455443 222344566666
Q ss_pred HHHHHHcCCccEEeehhH
Q 021239 190 VDTLTKSGSIDVIVVDSV 207 (315)
Q Consensus 190 i~~l~~~~~~~lVVIDsl 207 (315)
+..+ .+.++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 6554 35899999964
No 168
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.23 E-value=5e-06 Score=77.06 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 36799999999999999999998888765444555543
No 169
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.23 E-value=7e-06 Score=71.87 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 679999999999999999999988876544445543
No 170
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.23 E-value=2.7e-05 Score=72.60 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=60.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC----h--HHHHHcCCCCCCeEEe-CCCCHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD----P--SLAEAMGIDAENLLIA-QPDSAENLLSVV 190 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~----~--~~~~~~g~~~~~l~i~-~~~~~e~~~~~i 190 (315)
.+|.++.+.||+|+||||++..+|..+...|++|++++.+.... + .++++.++.. +... ..++.....+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~--~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV--IAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceE--EEeCCCCCHHHHHHHHH
Confidence 46889999999999999999999999988899999999875322 1 2445555331 0111 112222233333
Q ss_pred HHHHHcCCccEEeehhHhhhc
Q 021239 191 DTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~~l~ 211 (315)
... ...+.++|+||.-..+.
T Consensus 190 ~~~-~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 190 QAA-KARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHH-HhCCCCEEEEeCCCCCc
Confidence 332 34678999999877654
No 171
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=9.1e-06 Score=77.85 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=56.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH-HhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA-QKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLS 188 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~-~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~ 188 (315)
|..++.++.|.||+|+||||++.++|... ...|.+|+++++|..... .+++.+|++.. . ..+...
T Consensus 219 g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~---~~~~~~ 290 (432)
T PRK12724 219 GKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P---VKDIKK 290 (432)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----e---hHHHHH
Confidence 34567899999999999999999999876 567889999998873322 23455555431 1 112222
Q ss_pred HHHHHHHcCCccEEeehhH
Q 021239 189 VVDTLTKSGSIDVIVVDSV 207 (315)
Q Consensus 189 ~i~~l~~~~~~~lVVIDsl 207 (315)
.. ..+...+.++|+||+-
T Consensus 291 l~-~~l~~~~~D~VLIDTa 308 (432)
T PRK12724 291 FK-ETLARDGSELILIDTA 308 (432)
T ss_pred HH-HHHHhCCCCEEEEeCC
Confidence 22 2223467899999983
No 172
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.23 E-value=6.9e-06 Score=73.91 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=27.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
|=+.+|+++.|.|++|+|||||+..++.....
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 46789999999999999999999988766543
No 173
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.23 E-value=1.4e-05 Score=70.48 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=50.8
Q ss_pred HHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 77 LANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+..+|+.....++.+|..+ .-..-+..+...+. + ..+..+.|+|++|+|||+++..++..+...+.+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~-~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 2 LPLDVGLPDDPTFDNFYAG----GNAELLAALRQLAA-G--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCCCCCCCchhhcCcCcC----CcHHHHHHHHHHHh-c--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 3345555555556555421 11223456666654 2 356789999999999999999999888777888999885
Q ss_pred C
Q 021239 157 E 157 (315)
Q Consensus 157 E 157 (315)
.
T Consensus 75 ~ 75 (226)
T TIGR03420 75 A 75 (226)
T ss_pred H
Confidence 3
No 174
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=9.2e-06 Score=76.79 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=66.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--hH----HHHHcCCCCCCeEEeCCCCHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PS----LAEAMGIDAENLLIAQPDSAENLLSVV 190 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~~----~~~~~g~~~~~l~i~~~~~~e~~~~~i 190 (315)
+.+|.++.|+||+|+||||++..+|..+..+|.+|.+++.+.... .+ +++.+++. +....+..++...+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-----v~~~~dp~dL~~al 277 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-----LIVATSPAELEEAV 277 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-----EEecCCHHHHHHHH
Confidence 467999999999999999999999998888899999999986543 22 33334432 22234567777777
Q ss_pred HHHHHcCCccEEeehhHhhhc
Q 021239 191 DTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~~l~ 211 (315)
..+....+.++|+||......
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 666544578999999877543
No 175
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=3.9e-06 Score=80.13 Aligned_cols=39 Identities=31% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+++|+++.|.||+|+|||||+..++.......+.+ +++.
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g 80 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDG 80 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECC
Confidence 67899999999999999999988876654444443 4443
No 176
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=5e-06 Score=72.66 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=28.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+.+|+++.|.|++|+|||||+..++.......+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 57999999999999999999998887654333433
No 177
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.22 E-value=7.6e-06 Score=71.19 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL 58 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 679999999999999999999888776544445543
No 178
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.22 E-value=4.3e-06 Score=72.80 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 56 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 569999999999999999999988876654455543
No 179
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.22 E-value=7.4e-06 Score=73.02 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 59 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3679999999999999999999988866544444443
No 180
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=5.9e-06 Score=75.28 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 82 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL 82 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 3679999999999999999999988776544444443
No 181
>PRK06921 hypothetical protein; Provisional
Probab=98.21 E-value=7.8e-06 Score=74.41 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=34.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~ 156 (315)
.+..++|+|++|+|||+|+..++.++... |..|+|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 36789999999999999999999998887 889999996
No 182
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.21 E-value=8.1e-06 Score=72.57 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 43 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVI 43 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 568999999999999999999988776554445544
No 183
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.21 E-value=7.7e-06 Score=72.53 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 46799999999999999999999888766555556544
No 184
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=5.9e-06 Score=75.71 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 4679999999999999999999988776554455543
No 185
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.20 E-value=1.6e-05 Score=71.41 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
-+|+|+++.+.|++|+||||+...+..-....+++|-.-..+.
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~P 88 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP 88 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCc
Confidence 4789999999999999999999888877777778876555443
No 186
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.20 E-value=9.7e-06 Score=73.63 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 65 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW 65 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence 3569999999999999999999988776544445543
No 187
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.20 E-value=5.9e-06 Score=77.89 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
-+++|+++.|.|++|+|||||+..++.......+.+ +++.
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G 66 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDG 66 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECC
Confidence 367999999999999999999988876654445554 4443
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.20 E-value=5.3e-06 Score=78.65 Aligned_cols=36 Identities=33% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~ 55 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV 55 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 679999999999999999999888776554445544
No 189
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.20 E-value=1.3e-05 Score=70.92 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
=+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 65 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 3679999999999999999999988876544445543
No 190
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.20 E-value=9.5e-06 Score=72.89 Aligned_cols=37 Identities=32% Similarity=0.339 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 4679999999999999999999988766544444443
No 191
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.19 E-value=1.7e-05 Score=74.53 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=83.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHH----cCCCCCCe---------------EEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA----MGIDAENL---------------LIA 178 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~----~g~~~~~l---------------~i~ 178 (315)
..|...+|-|.||+|||+|++.++..... .+.++|+++--..+.....- -.++..++ ...
T Consensus 8 ~~G~TLLIKG~PGTGKTtfaLelL~~l~~-~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~~~vp~ 86 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKTTFALELLNSLKD-HGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLDKDVPF 86 (484)
T ss_pred CCCcEEEEecCCCCCceeeehhhHHHHhc-cCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhccccccCcc
Confidence 57999999999999999999999877754 45889999864443321110 01111111 111
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccc
Q 021239 179 QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRF 258 (315)
Q Consensus 179 ~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~ 258 (315)
.....+.+.+++.+.-...+.-+|++||..++... ...+.+. ...+-.....|..+|++.++-+|++.....
T Consensus 87 ~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiiey--la~~~~~------~ed~e~l~~dLv~lard~g~~LIlVsEsa~ 158 (484)
T PF07088_consen 87 ERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEY--LAEEHDE------PEDIETLTNDLVELARDMGINLILVSESAE 158 (484)
T ss_pred cccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHH--hhhhhcC------cHHHHHHHHHHHHHHhhcCceEEEEEecCC
Confidence 12346677777775433467789999995555421 1111111 111445566777788999999999998865
Q ss_pred cc
Q 021239 259 SA 260 (315)
Q Consensus 259 ~~ 260 (315)
..
T Consensus 159 ~~ 160 (484)
T PF07088_consen 159 NE 160 (484)
T ss_pred CC
Confidence 54
No 192
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=5.3e-06 Score=78.31 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~ 64 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 36799999999999999999998887665544555544
No 193
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.19 E-value=8.5e-06 Score=71.39 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4679999999999999999999888766544445543
No 194
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.19 E-value=1e-05 Score=70.66 Aligned_cols=38 Identities=29% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 36799999999999999999998888765544555443
No 195
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.19 E-value=7.7e-06 Score=72.11 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=34.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
-+++|+++.|.|++|+||||+...++.......+.+.++..+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~ 71 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED 71 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcc
Confidence 368999999999999999999999988877766666554433
No 196
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.19 E-value=1.4e-05 Score=72.31 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+.+|+++.|.|++|+|||||+..++....
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56999999999999999999998887654
No 197
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=8.4e-06 Score=74.03 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 69 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence 3669999999999999999999988876544444443
No 198
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=9.2e-06 Score=73.18 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence 35699999999999999999999888765544455443
No 199
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.18 E-value=1.1e-05 Score=71.71 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 58 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE
Confidence 679999999999999999999988766544444443
No 200
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.18 E-value=1e-05 Score=69.65 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 50 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVL 50 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEE
Confidence 3679999999999999999999887765544444543
No 201
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.18 E-value=2.2e-05 Score=75.96 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=61.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
..++.++|++|+||||++..+|..+. +.|.+|++++++..... .+++..|++.- ......++.++.....+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~--~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF--ALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE--ecCCCCCHHHHHHHHHH
Confidence 46899999999999999999999876 57889999999865442 23455554421 11222344455433333
Q ss_pred HHHcCCccEEeehhHhhhc
Q 021239 193 LTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~l~ 211 (315)
.....++++|+||+-..+.
T Consensus 177 ~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHhcCCCEEEEeCCCccc
Confidence 3445678999999877543
No 202
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.17 E-value=1.1e-05 Score=70.71 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 36799999999999999999999888765544555543
No 203
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=8e-06 Score=72.82 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+.+|+++.|.|++|+|||||+..++.......+.+
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v 56 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI 56 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 56899999999999999999998877654444443
No 204
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.17 E-value=1e-05 Score=73.17 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 36799999999999999999998888765444455443
No 205
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.17 E-value=1.6e-05 Score=69.29 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+..|+++.|.||+|+|||||+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3457999999999999999999998765
No 206
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.4e-05 Score=70.29 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=36.4
Q ss_pred cCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 103 TGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 103 TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.|-..|+.+-= -+++|+++.|.|++|+|||||...+....-...+ -+++..+
T Consensus 15 ~~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~ 66 (258)
T COG3638 15 GGHQALKDVNL--EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGV 66 (258)
T ss_pred CCceeeeeEeE--EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEeccc
Confidence 44455554422 5789999999999999999999998874433334 4445543
No 207
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=8.1e-06 Score=73.78 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 59 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3679999999999999999999988876544444443
No 208
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=3.5e-06 Score=76.70 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC---CC-CChHHHHHcCCCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE---NA-LDPSLAEAMGIDAE 173 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E---~~-~~~~~~~~~g~~~~ 173 (315)
-++.|+++.+.||+|+||||++..+|.--....+.+. ++.+ +. .-..+.+++|+..+
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~-~~~~~l~D~~~~~~~~R~VGfvFQ 84 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR-LNGRVLFDVSNLAVRDRKVGFVFQ 84 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE-ECCEeccchhccchhhcceeEEEe
Confidence 4779999999999999999999988876665555543 3333 11 12345666676554
No 209
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.16 E-value=1e-05 Score=73.60 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
=+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3679999999999999999999988876544444443
No 210
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.16 E-value=2.5e-06 Score=71.52 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC------CCCChHHHHHcCCCCCCeEEeCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE------NALDPSLAEAMGIDAENLLIAQP 180 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E------~~~~~~~~~~~g~~~~~l~i~~~ 180 (315)
+.+|+.+.|.||+|+|||||..-+|.--...++.|..+... +.....|.+..|+.++.+++.+.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 56999999999999999999977765544455566554432 11222456667777666555443
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.16 E-value=9.1e-06 Score=72.56 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=29.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+.+|+++.|.|++|+|||||+..++.......+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 57 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 67999999999999999999999987654444444
No 212
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=6.4e-06 Score=71.78 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+++|+++.|.|++|+|||||+..++....
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 367999999999999999999988877665
No 213
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=1e-05 Score=70.93 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.+ +++.|.|++|+|||||+..++.......+.+.|
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 56 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL 56 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 568 999999999999999999887765544555543
No 214
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.15 E-value=1.2e-05 Score=70.72 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 36799999999999999999998888765555555543
No 215
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.15 E-value=1.8e-05 Score=66.27 Aligned_cols=125 Identities=16% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--h-HHHHH----------cCCC-CCCeEEe---
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--P-SLAEA----------MGID-AENLLIA--- 178 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~-~~~~~----------~g~~-~~~l~i~--- 178 (315)
-+.+|+.+.|.||+|+|||||..++|.-..... ..+||..|.-.. + ....+ +|-. .+|+.+.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~-G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~ 103 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI 103 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCC-ceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHH
Confidence 467999999999999999999988876655444 445555543321 1 11111 1211 1222211
Q ss_pred ---CCC--------------------------CHH-HHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHH
Q 021239 179 ---QPD--------------------------SAE-NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (315)
Q Consensus 179 ---~~~--------------------------~~e-~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q 228 (315)
+++ ..| +...+++.+ +..|+++.+|.+++... + ..
T Consensus 104 r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L--q~~P~ILLLDE~TsALD--~-----------~n 168 (223)
T COG4619 104 RNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSALD--E-----------SN 168 (223)
T ss_pred hccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh--hcCCceEEecCchhhcC--h-----------hh
Confidence 011 111 334445554 46899999999987762 1 11
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 229 ~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
.+.+-..+.++. ++.+++|+-++|--+.
T Consensus 169 kr~ie~mi~~~v---~~q~vAv~WiTHd~dq 196 (223)
T COG4619 169 KRNIEEMIHRYV---REQNVAVLWITHDKDQ 196 (223)
T ss_pred HHHHHHHHHHHh---hhhceEEEEEecChHH
Confidence 233555555554 7899999999987654
No 216
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.15 E-value=8.3e-06 Score=78.43 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l 62 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 36799999999999999999999888765544555543
No 217
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.15 E-value=1.1e-05 Score=77.35 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+++..-++|+||||+|||++|..++... +...+.++..+ ....+ ....+.....+-....
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~-----l~~~~-----------~g~~~~~i~~~f~~a~ 221 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE-----LVQKF-----------IGEGARLVRELFELAR 221 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHH-----HhHhh-----------ccchHHHHHHHHHHHH
Confidence 56666679999999999999999987765 33444443211 11100 1112223333333344
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+|+||.+..+......... .......+.+.+.+..+...-...++.||.++.....+
T Consensus 222 ~~~p~IlfiDEiD~l~~~r~~~~~---~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 222 EKAPSIIFIDEIDAIAAKRTDSGT---SGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hcCCeEEEEechhhhhcccccCCC---CccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 567899999999998743211111 11112233344444433222223467777666544333
No 218
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.15 E-value=1.5e-05 Score=70.02 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
-+.+|+++.|.|++|+|||||+..++.......+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 67 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ 67 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee
Confidence 46799999999999999999999888765443343
No 219
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=98.14 E-value=5e-05 Score=68.37 Aligned_cols=169 Identities=15% Similarity=0.227 Sum_probs=118.4
Q ss_pred cHHHHHhhcC--CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC------C
Q 021239 105 SLKLDLALGI--GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE------N 174 (315)
Q Consensus 105 ~~~LD~~l~~--GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~------~ 174 (315)
+++|+.+|++ +..++|.+++|... ++-=|.|..++...+.+.+.+|+++.+..++.- ..++++|+++. +
T Consensus 2 f~eln~ll~~~~~~~~~g~~ili~d~-~~dgsFLlh~~L~~~Lk~~~~V~fv~~~q~~~HY~~v~~KLG~NL~~~~~~gq 80 (249)
T PF09807_consen 2 FPELNSLLNWSPDSVPPGKLILIEDC-ETDGSFLLHHFLSQYLKAGCKVCFVAFSQSFSHYNNVAQKLGVNLSAAKEKGQ 80 (249)
T ss_pred chHHHHHhcCCCCCCCCCeEEEEEcC-CCCchhHHHHHHHHHhcCCCcEEEEEccCCHHHHHHHHHhhEecchHhccCCc
Confidence 4788877753 57889999999999 999999999999999999999999999998764 67888888753 2
Q ss_pred eEEeCC----------------------------CCHHHHHHHHHHHHHc---CCccEEeehhHhhhccccccCCCccCC
Q 021239 175 LLIAQP----------------------------DSAENLLSVVDTLTKS---GSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 175 l~i~~~----------------------------~~~e~~~~~i~~l~~~---~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
+.+.+. .+...+++.+++.+.. .+..+||||.++.+.. ....
T Consensus 81 l~fiD~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~-lG~s------ 153 (249)
T PF09807_consen 81 LVFIDGLKSSLDLLFDEDSSDEPNPLKFLREDNASSLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLS-LGVS------ 153 (249)
T ss_pred EEEeehhhhhhhhhhccccccCCccccccccCCcchHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHH-cCCC------
Confidence 221110 1245666666666543 4568999999999883 1110
Q ss_pred ChHHHHHHHHHHHHHHH-HHHhccCcEEEEEeccccccCCCCCCCCCcccc-ccccccccccceEEEEEeccc
Q 021239 224 YSDAQSRIMTQALRKIH-YSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVT-SGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~-~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~-~gG~~~~~~~~~rl~l~k~~~ 294 (315)
...+.++++.+. .++.+.+..+|++.|..... ..+.. ...+.+.|.++.+|.++.-..
T Consensus 154 -----~~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~--------~~e~~~~l~~~L~h~a~l~i~v~~L~T 213 (249)
T PF09807_consen 154 -----SNDVLDFIHYCRATLCSESNGSLVVLVHCDIDD--------EDEENDLLLNSLAHMADLVITVEPLPT 213 (249)
T ss_pred -----HHHHHHHHHHHHHHhccccCCCEEEEEecCCCC--------ccchHHHHHHHHHHHhcEEEEecCCCC
Confidence 123556666664 34566677777777765433 11222 367889999999998876543
No 220
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.14 E-value=1.1e-05 Score=72.59 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3679999999999999999999988866544445543
No 221
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.14 E-value=6.9e-06 Score=71.58 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 367999999999999999999998877654444444
No 222
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.14 E-value=6.3e-06 Score=72.75 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=37.2
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
|+..+|..-= -+++|+++.|.||+|+||||+...+...+...++.+.|-.
T Consensus 16 Gl~Al~~Vsl--~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G 65 (250)
T COG0411 16 GLTAVNDVSL--EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65 (250)
T ss_pred CEEEEeceeE--EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECC
Confidence 4444444433 5789999999999999999999777777766667765544
No 223
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=2e-05 Score=72.12 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 62 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 679999999999999999999988876554555543
No 224
>PRK08116 hypothetical protein; Validated
Probab=98.13 E-value=2.6e-05 Score=71.12 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=33.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+..++|+|++|+|||+|+..++..+...+.+|+|++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 44689999999999999999999998888999999853
No 225
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.13 E-value=1.3e-05 Score=74.30 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 36799999999999999999998887655444555543
No 226
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.13 E-value=2.2e-05 Score=75.86 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC---CChHHHHHcCCCCCCeEEeC------------CC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAENLLIAQ------------PD 181 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~---~~~~~~~~~g~~~~~l~i~~------------~~ 181 (315)
+++|+...|.||+|+|||||+..+........+.| -+|.-+- .....-+.+|+-++++.+++ ..
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V-RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV-RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHcccccCCCcE-EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 56899999999999999999998887766544443 4443211 11234566777777654432 22
Q ss_pred CHHHHHHHHH-----HHH-------------------------------HcCCccEEeehhHhhhccccccCCCccCCCh
Q 021239 182 SAENLLSVVD-----TLT-------------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (315)
Q Consensus 182 ~~e~~~~~i~-----~l~-------------------------------~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~ 225 (315)
+.+.+++..+ +++ --++|.+||+|..++-.. .
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD-----~------- 505 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLD-----S------- 505 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcc-----h-------
Confidence 3333332221 111 025789999997765441 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 226 ~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
.-...+...+..+ +..|+++|++.|--
T Consensus 506 -~GE~AL~~Ai~~~----k~rG~~vvviaHRP 532 (580)
T COG4618 506 -EGEAALAAAILAA----KARGGTVVVIAHRP 532 (580)
T ss_pred -hHHHHHHHHHHHH----HHcCCEEEEEecCH
Confidence 1122355555555 78899999999853
No 227
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.13 E-value=2e-05 Score=64.93 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=63.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHH--HHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE--NLLSVVDTL 193 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e--~~~~~i~~l 193 (315)
-+++|+++.|.|++|+|||||+..++.......+.+ +++.. ..+.+....+.- +-+.+.+.+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~---------------~~i~~~~~lS~G~~~rv~laral 85 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGST---------------VKIGYFEQLSGGEKMRLALAKLL 85 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCe---------------EEEEEEccCCHHHHHHHHHHHHH
Confidence 367999999999999999999988877655444444 44421 112222212222 333444444
Q ss_pred HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+ .+++++++|....-... .....+.+.++ +.+.++++++|-....
T Consensus 86 ~--~~p~illlDEP~~~LD~-------------~~~~~l~~~l~-------~~~~til~~th~~~~~ 130 (144)
T cd03221 86 L--ENPNLLLLDEPTNHLDL-------------ESIEALEEALK-------EYPGTVILVSHDRYFL 130 (144)
T ss_pred h--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHH-------HcCCEEEEEECCHHHH
Confidence 4 47899999977654410 11122333333 3357899998876544
No 228
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.13 E-value=1.5e-05 Score=70.73 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 58 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 679999999999999999999888876554455543
No 229
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.13 E-value=1.9e-05 Score=66.99 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
-++.|+++.|.||+|+|||||..-+|.-.....+.+..-+-+++
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t 64 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC
Confidence 36799999999999999999997766655555555443333333
No 230
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.13 E-value=1.5e-05 Score=70.38 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 5799999999999999999999887765555556544
No 231
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.13 E-value=3.1e-05 Score=65.31 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 367999999999999999999998887655444433
No 232
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=72.33 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 5689999999999999999999888765444455443
No 233
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.12 E-value=8.1e-06 Score=77.49 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
-+++|+++.|.|++|+|||||+..++.......+.+ +++.+
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~ 55 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGE 55 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCE
Confidence 367999999999999999999998887776555555 44443
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=98.12 E-value=4e-05 Score=71.88 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
++.++.+.|+||+||||++..++..+...|.+|++++.+.-... .+++.+|+..-... ...++..-+.+.+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~-~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHK-YGADPAAVAYDAIEH 217 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceeccc-CCCCHHHHHHHHHHH
Confidence 35799999999999999999999888888889999887743221 24555665432111 111222223333333
Q ss_pred HHHcCCccEEeehhHhhhc
Q 021239 193 LTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~l~ 211 (315)
....+.++|+||.-..+.
T Consensus 218 -~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 218 -AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred -HHhCCCCEEEEECCCccC
Confidence 234578999999877554
No 235
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.12 E-value=1.4e-05 Score=69.18 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=28.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+.+|+++.|.||+|+|||||+..++.......+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV 57 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 66999999999999999999998887654444443
No 236
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=1.1e-05 Score=74.37 Aligned_cols=37 Identities=35% Similarity=0.492 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT 65 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 4779999999999999999999988876554444443
No 237
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=1.3e-05 Score=72.94 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
-+++|+++.|.||+|+|||||+..++.......+.+ +++.
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g 70 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNN 70 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECC
Confidence 367999999999999999999988877654444444 4443
No 238
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.11 E-value=1.4e-05 Score=70.03 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i 56 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 367999999999999999999998877654444444
No 239
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=1.4e-05 Score=73.39 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhc
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL 147 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~ 147 (315)
-+++|+++.|.|++|+|||||+..++......
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 46799999999999999999999888766443
No 240
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=1.3e-05 Score=70.87 Aligned_cols=142 Identities=16% Similarity=0.261 Sum_probs=78.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe------EE-EEecCCCCChH---------HHHHcCCCCCCeE----
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY------CA-YLDVENALDPS---------LAEAMGIDAENLL---- 176 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~------v~-~i~~E~~~~~~---------~~~~~g~~~~~l~---- 176 (315)
+.+|+.+.|.|++|+|||||+.-++.......++ +. .++....+.++ ++.-+|+..+.+.
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 5789999999999999999998887766654333 33 33433333321 1222333221110
Q ss_pred -EeCCCCHHH------------HHHHH-HHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHH
Q 021239 177 -IAQPDSAEN------------LLSVV-DTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (315)
Q Consensus 177 -i~~~~~~e~------------~~~~i-~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~ 242 (315)
+.+-..+.+ +...+ -.....-+|++++||..-++-. . ....+...++..+
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD-~---------------~F~~K~~~rl~e~ 193 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD-A---------------AFQEKCLERLNEL 193 (249)
T ss_pred HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC-H---------------HHHHHHHHHHHHH
Confidence 000000000 11111 1112345899999998887652 1 1122334444433
Q ss_pred HhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 243 LCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 243 ~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.+.+.++|+++|-...+ ..+++..+.+++.+.
T Consensus 194 -~~~~~tiv~VSHd~~~I-------------------~~~Cd~~i~l~~G~i 225 (249)
T COG1134 194 -VEKNKTIVLVSHDLGAI-------------------KQYCDRAIWLEHGQI 225 (249)
T ss_pred -HHcCCEEEEEECCHHHH-------------------HHhcCeeEEEeCCEE
Confidence 34569999999987555 236777777777654
No 241
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.11 E-value=1.1e-05 Score=71.90 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i 78 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 56999999999999999999998887654444444
No 242
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=1.7e-05 Score=70.92 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.|++|+|||||+..++.......+.+.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 5699999999999999999999888766544555443
No 243
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.11 E-value=1.2e-05 Score=70.96 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4679999999999999999999988876554444443
No 244
>PRK10908 cell division protein FtsE; Provisional
Probab=98.11 E-value=1.5e-05 Score=70.34 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3679999999999999999999988866544444443
No 245
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=1.1e-05 Score=78.03 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCCCC----h--HHHHHcCCCCCCeEEeCCCCHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLLSV 189 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~~~----~--~~~~~~g~~~~~l~i~~~~~~e~~~~~ 189 (315)
..|.++.|.||+|+||||++..+|..+. ..+.+|++++++.... + .+++.++++. ....+..++...
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-----~~~~~~~~l~~~ 293 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-----EVVYDPKELAKA 293 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----EccCCHHhHHHH
Confidence 3477999999999999999999999887 4578999999876421 1 2344455432 223344566666
Q ss_pred HHHHHHcCCccEEeehhHhh
Q 021239 190 VDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 190 i~~l~~~~~~~lVVIDsl~~ 209 (315)
+..+ .+.++|+||....
T Consensus 294 l~~~---~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQL---RDCDVILIDTAGR 310 (424)
T ss_pred HHHh---CCCCEEEEeCCCC
Confidence 6554 3689999997653
No 246
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=1.3e-05 Score=73.61 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
=+++|+++.|.|++|+|||||+..++.......+.+.+
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i 65 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEE
Confidence 36799999999999999999998888765544555543
No 247
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=1.3e-05 Score=73.27 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
=+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 63 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence 3679999999999999999999888766544444443
No 248
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.10 E-value=1.9e-05 Score=68.81 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 46799999999999999999999888765555555543
No 249
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=4.5e-05 Score=67.76 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|||||||..-+|.-.....+.|.+
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 5699999999999999999998777655554444443
No 250
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=1.5e-05 Score=73.31 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 46799999999999999999999988766555555433
No 251
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.09 E-value=2.5e-05 Score=70.41 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+++|+++.|.|++|+|||||+..++.....
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999999988766543
No 252
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.09 E-value=2.5e-05 Score=70.55 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 59 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD 59 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence 569999999999999999999988776544445543
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.09 E-value=7.8e-05 Score=72.36 Aligned_cols=99 Identities=24% Similarity=0.265 Sum_probs=63.3
Q ss_pred HHHHHhhcCCCC------CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCC
Q 021239 106 LKLDLALGIGGL------PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAE 173 (315)
Q Consensus 106 ~~LD~~l~~GGl------~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~ 173 (315)
.+|-.+++ ++- .+..++.++|++|+||||++..+|..+...|.+|++++.+..... .+++.++++.
T Consensus 76 ~~L~~~l~-~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~- 153 (437)
T PRK00771 76 EELVKLLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF- 153 (437)
T ss_pred HHHHHHhC-CCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE-
Confidence 45666666 321 235789999999999999999999988888899999998764332 2345555442
Q ss_pred CeEEe-CCCCHHHH-HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 174 NLLIA-QPDSAENL-LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 174 ~l~i~-~~~~~e~~-~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
+.. ...+..++ .+.+... . ..++|+||.-..+.
T Consensus 154 --~~~~~~~d~~~i~~~al~~~-~--~~DvVIIDTAGr~~ 188 (437)
T PRK00771 154 --YGDPDNKDAVEIAKEGLEKF-K--KADVIIVDTAGRHA 188 (437)
T ss_pred --EecCCccCHHHHHHHHHHHh-h--cCCEEEEECCCccc
Confidence 211 11222332 2333333 2 34999999776443
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.09 E-value=3e-05 Score=69.61 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=33.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
..++|+|+||+|||+|+..++..+...|.+|+|++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 478999999999999999999999988999999975
No 255
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-05 Score=80.52 Aligned_cols=123 Identities=24% Similarity=0.325 Sum_probs=79.9
Q ss_pred hhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHH
Q 021239 111 ALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVV 190 (315)
Q Consensus 111 ~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i 190 (315)
+++ -|+.+.+=++++||||+|||.+|..+|.++. .-|++..+ ++.. |.++- ..|+.+..+
T Consensus 697 Lfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcs-----L~FlSVKG---PELL--------NMYVG---qSE~NVR~V 756 (953)
T KOG0736|consen 697 LFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECS-----LNFLSVKG---PELL--------NMYVG---QSEENVREV 756 (953)
T ss_pred hhh-ccccccceeEEECCCCCchHHHHHHHHhhce-----eeEEeecC---HHHH--------HHHhc---chHHHHHHH
Confidence 566 7999999999999999999999999988873 44566432 1211 11221 123333333
Q ss_pred HHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 191 DTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
-+-.++..|.+|+.|.+..+.|.-...++.|. ...|.++|.|..|-.+.....-.|+++.-.+
T Consensus 757 FerAR~A~PCVIFFDELDSlAP~RG~sGDSGG----VMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 757 FERARSAAPCVIFFDELDSLAPNRGRSGDSGG----VMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHhhccCCeEEEeccccccCccCCCCCCccc----cHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 33334568999999999999976555444443 3456688888888766654445555555443
No 256
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.08 E-value=2.2e-05 Score=70.16 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3679999999999999999999988876554444443
No 257
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.07 E-value=1.7e-05 Score=71.60 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
-+++|+++.|.|++|+|||||+..++.......+.+ +++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g 66 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNG 66 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECC
Confidence 467999999999999999999988887654444444 4443
No 258
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=2.1e-05 Score=74.70 Aligned_cols=87 Identities=10% Similarity=0.212 Sum_probs=62.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDTL 193 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l 193 (315)
+..+.|.||+|+||||++..+|..+..+|.+|.+++++..... .+++.+|++ +....+..++...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence 4689999999999999999999998888889999998764421 123334432 33234556666666665
Q ss_pred HHcCCccEEeehhHhhhc
Q 021239 194 TKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l~ 211 (315)
....+.++|+||......
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 444478999999776543
No 259
>PRK13768 GTPase; Provisional
Probab=98.07 E-value=3.8e-05 Score=69.43 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=36.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
.++.+.|++|+||||++.+++..+...|.+|++++.+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence 47899999999999999999999988899999999886543
No 260
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=1.9e-05 Score=70.19 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 46799999999999999999999988766555555543
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.07 E-value=2.9e-05 Score=70.18 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=36.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++.+..++|+|+||+|||+|+..++.++.+.|.+|+|+.+
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 4478899999999999999999999999988999999985
No 262
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=1.9e-05 Score=72.60 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence 467999999999999999999998886654444444
No 263
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=1.3e-05 Score=76.96 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~ 86 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence 679999999999999999999888876655555554
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.07 E-value=4.4e-05 Score=70.83 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=51.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
.+.-+.|+|++|+|||+|+..++..++..|.+|.|+....-.. .+...++ ..+..+. +..+ ..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~-~lk~~~~----------~~~~~~~---l~~l---~~ 217 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR-ELKNSIS----------DGSVKEK---IDAV---KE 217 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH-HHHHHHh----------cCcHHHH---HHHh---cC
Confidence 4567999999999999999999999999999999998632111 1111111 1122222 2222 37
Q ss_pred ccEEeehhHhhhc
Q 021239 199 IDVIVVDSVAALI 211 (315)
Q Consensus 199 ~~lVVIDsl~~l~ 211 (315)
++++|||-+..-.
T Consensus 218 ~dlLiIDDiG~e~ 230 (306)
T PRK08939 218 APVLMLDDIGAEQ 230 (306)
T ss_pred CCEEEEecCCCcc
Confidence 8999999887543
No 265
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.06 E-value=1.7e-05 Score=72.20 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 72 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 72 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 46799999999999999999999888766544555543
No 266
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.05 E-value=2.2e-05 Score=77.08 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=35.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+.+|+++.|.|++||||||++..++.-....++.+.|...+
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 67899999999999999999999888777777777776644
No 267
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.05 E-value=2e-05 Score=69.50 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=28.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+.+|+++.|.|++|+|||||+..++.......+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 57999999999999999999998887654444433
No 268
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.05 E-value=1.9e-05 Score=69.85 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH---hcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ---KLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~---~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.... ...+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~ 68 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL 68 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE
Confidence 467999999999999999999998887665 3444443
No 269
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.2e-05 Score=78.93 Aligned_cols=120 Identities=22% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
=|+.|-.-++|.||||||||.||..+|.+.. |=|++... ++... |+. -.+-+.+.+.+++.
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~isA---peivS--GvS--------GESEkkiRelF~~A- 278 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELG-----VPFLSISA---PEIVS--GVS--------GESEKKIRELFDQA- 278 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhcC-----CceEeecc---hhhhc--ccC--------cccHHHHHHHHHHH-
Confidence 4777888899999999999999999887763 22333110 00000 000 11223334444433
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhc--cCcEEEEEeccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ--SHTLIIFLNQVRFS 259 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~--~~i~VI~inq~~~~ 259 (315)
....|.+|+||.+.++.++-+. .+.+...|.+++.|.-+-.+..+ .|-.|++|.-.++.
T Consensus 279 ~~~aPcivFiDeIDAI~pkRe~------aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 279 KSNAPCIVFIDEIDAITPKREE------AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred hccCCeEEEeecccccccchhh------HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 4568999999999999864332 22334455566666555433332 36677777766543
No 270
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.8e-05 Score=74.16 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~ 74 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY 74 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 5699999999999999999999887765444455544
No 271
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=98.05 E-value=4.1e-05 Score=69.46 Aligned_cols=114 Identities=17% Similarity=0.311 Sum_probs=74.2
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+++.+.+....+..|+|....+.... +..+.+ +
T Consensus 47 ~~i~e~L~TGI~~ID~l~p---igrGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~ 123 (274)
T cd01132 47 KSVNEPLQTGIKAIDAMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHG 123 (274)
T ss_pred CCcccccccCCEEeeccCC---cccCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcC
Confidence 3567889999999999986 7799999999999999999987766555445556677776665543 222222 2
Q ss_pred CCCCCeEE-eCCCC--HHH------HHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLI-AQPDS--AEN------LLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i-~~~~~--~e~------~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
....-+.+ ...+. .+. .....+.+..++.--+|++|+++.+.
T Consensus 124 ~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 124 AMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred ccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 21122222 22221 222 22334445555566789999999885
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.04 E-value=5.4e-05 Score=73.01 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=57.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--H----HHHHcCCCCCCeEEeCCCCHHHH-HHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--S----LAEAMGIDAENLLIAQPDSAENL-LSVVDT 192 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~----~~~~~g~~~~~l~i~~~~~~e~~-~~~i~~ 192 (315)
..++.++|++|+||||++..+|..+...|.+|+.++++..... . +++..+++.. ......++..+ .+.+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~--~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY--GSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE--eecCCCCHHHHHHHHHHH
Confidence 4689999999999999999999988888899999998754432 1 2333333321 11122222222 233443
Q ss_pred HHHcCCccEEeehhHhhh
Q 021239 193 LTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~l 210 (315)
+ +..+.++|+||.-..+
T Consensus 178 ~-~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 F-KKENFDIIIVDTSGRH 194 (429)
T ss_pred H-HhCCCCEEEEECCCCC
Confidence 3 3357899999987644
No 273
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.6e-05 Score=71.37 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=29.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 65 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK 65 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 569999999999999999999988877655555553
No 274
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.8e-05 Score=69.50 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 569999999999999999999988876544445543
No 275
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.2e-05 Score=72.86 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
=+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 36799999999999999999998888765544555544
No 276
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.04 E-value=3.3e-05 Score=76.16 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=51.9
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-----CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCH----HH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-----GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA----EN 185 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-----g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~----e~ 185 (315)
-|+++..-++|+||||+|||+++..++...... +....|++...+ ++.-...... ..
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~--------------eLl~kyvGete~~ir~ 276 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP--------------ELLNKYVGETERQIRL 276 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--------------hhcccccchHHHHHHH
Confidence 367777779999999999999999998877543 233444443221 0000001111 23
Q ss_pred HHHHHHHHHHcCCccEEeehhHhhhcc
Q 021239 186 LLSVVDTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 186 ~~~~i~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
+++.++.....+.+.+|+||.+..++.
T Consensus 277 iF~~Ar~~a~~g~p~IIfIDEiD~L~~ 303 (512)
T TIGR03689 277 IFQRAREKASDGRPVIVFFDEMDSIFR 303 (512)
T ss_pred HHHHHHHHhhcCCCceEEEehhhhhhc
Confidence 334444444445789999999999984
No 277
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.6e-05 Score=69.50 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+.+|+++.|.|++|+|||||+..++......++.+.|
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 46799999999999999999998887765545555543
No 278
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.03 E-value=3.1e-05 Score=69.22 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 61 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 36799999999999999999999888765544555443
No 279
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.03 E-value=1.8e-05 Score=75.22 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+.+..-++|+||||+|||+++..++..... ..+.+.. ......+ ..........+-+...
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~~~v~~-----~~l~~~~-----------~g~~~~~i~~~f~~a~ 212 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TFIRVVG-----SELVRKY-----------IGEGARLVREIFELAK 212 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CEEecch-----HHHHHHh-----------hhHHHHHHHHHHHHHH
Confidence 5666677999999999999999998776532 2111110 0111100 0111222222333334
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+|+||.+..+... ...... .......+.+.+.+..+..+-...++.||++++....+
T Consensus 213 ~~~p~il~iDEiD~l~~~-~~~~~~--~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 213 EKAPSIIFIDEIDAIAAK-RTDSGT--SGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred hcCCcEEEhhhhhhhccc-cccCCC--CccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 557889999999988732 211111 11112233344444444322123467777776654433
No 280
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.03 E-value=5.7e-05 Score=74.33 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+++..-++++||||+|||.+|..+|... +.+.+.++...-.. ......+..+..+-...+
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~----------------~~vGese~~l~~~f~~A~ 315 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG----------------GIVGESESRMRQMIRIAE 315 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc----------------cccChHHHHHHHHHHHHH
Confidence 67777889999999999999999998776 34444444311000 001112322222223344
Q ss_pred cCCccEEeehhHhhhcc
Q 021239 196 SGSIDVIVVDSVAALIP 212 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~ 212 (315)
...+.+|+||.+..++.
T Consensus 316 ~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 316 ALSPCILWIDEIDKAFS 332 (489)
T ss_pred hcCCcEEEehhhhhhhc
Confidence 56899999999998874
No 281
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=1.5e-05 Score=73.01 Aligned_cols=40 Identities=35% Similarity=0.483 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+ +++.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g 71 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-YVDG 71 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECC
Confidence 467999999999999999999988887665555554 4443
No 282
>PHA00729 NTP-binding motif containing protein
Probab=98.02 E-value=2.4e-05 Score=69.10 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=47.2
Q ss_pred HHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH-------------hcCCeEEEEecCCCCChHHHHHcCCCCCCe
Q 021239 109 DLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-------------KLGGYCAYLDVENALDPSLAEAMGIDAENL 175 (315)
Q Consensus 109 D~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~-------------~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l 175 (315)
..+.. +|+. .++|+|+||+||||+|..++..+. ..+..|.|++
T Consensus 10 ~~l~~-~~f~---nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid-------------------- 65 (226)
T PHA00729 10 SAYNN-NGFV---SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFE-------------------- 65 (226)
T ss_pred HHHhc-CCeE---EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEE--------------------
Confidence 33444 5664 689999999999999999988753 1223333443
Q ss_pred EEeCCCCHHHHHHHHHHHHHc-CCccEEeehhHhhhc
Q 021239 176 LIAQPDSAENLLSVVDTLTKS-GSIDVIVVDSVAALI 211 (315)
Q Consensus 176 ~i~~~~~~e~~~~~i~~l~~~-~~~~lVVIDsl~~l~ 211 (315)
.+++...+...... ..++++|||.++...
T Consensus 66 -------~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 66 -------LPDALEKIQDAIDNDYRIPLIIFDDAGIWL 95 (226)
T ss_pred -------HHHHHHHHHHHHhcCCCCCEEEEeCCchhh
Confidence 35555555444322 246899999987666
No 283
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=7.6e-05 Score=73.43 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=60.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCC--hHHHHHcCCCCCCeEEeCCCCHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~--~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~ 191 (315)
-+..|.++.|.|++|+||||++..++..+... +.+|.+++.+.... .+..+.++- .-.+.+....+..++...+.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~-iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGR-QLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhc-ccCceeEecCcHHHHHHHHH
Confidence 45679999999999999999999999887765 46899999865332 122222221 11222333344556666665
Q ss_pred HHHHcCCccEEeehhHhhh
Q 021239 192 TLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l 210 (315)
++ .+.++|+||.....
T Consensus 425 ~l---~~~DLVLIDTaG~s 440 (559)
T PRK12727 425 RL---RDYKLVLIDTAGMG 440 (559)
T ss_pred Hh---ccCCEEEecCCCcc
Confidence 54 36899999987644
No 284
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=2.3e-05 Score=71.40 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4779999999999999999999888776544444443
No 285
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=2.8e-05 Score=73.76 Aligned_cols=86 Identities=15% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc-C-CeEEEEecCCCCC----h--HHHHHcCCCCCCeEEeCCCCHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-G-GYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLLS 188 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g-~~v~~i~~E~~~~----~--~~~~~~g~~~~~l~i~~~~~~e~~~~ 188 (315)
++.|.++.|.||+|+||||++..++..+... | .+|.+++++.... + .+++.+|++.. ...+..++..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-----~~~~~~~l~~ 208 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-----AVKDGGDLQL 208 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-----ecCCcccHHH
Confidence 5679999999999999999999999987643 5 5899998776532 1 24556665431 1222233333
Q ss_pred HHHHHHHcCCccEEeehhHhhh
Q 021239 189 VVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 189 ~i~~l~~~~~~~lVVIDsl~~l 210 (315)
.+.++ .+.++|+||.....
T Consensus 209 ~l~~l---~~~DlVLIDTaG~~ 227 (374)
T PRK14722 209 ALAEL---RNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHh---cCCCEEEEcCCCCC
Confidence 34333 46799999987633
No 286
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=3.3e-05 Score=68.62 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 36799999999999999999999887776555555543
No 287
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.01 E-value=3.9e-05 Score=75.43 Aligned_cols=39 Identities=31% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc----CCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~----g~~v~~i~ 155 (315)
+.+|+++.|.|++||||||+++.+..-.-.. ++.++|-.
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g 74 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECC
Confidence 5699999999999999999999887665443 45555544
No 288
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=3e-05 Score=69.98 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEE
Confidence 569999999999999999999988876544444443
No 289
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=4.6e-05 Score=76.33 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=62.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh--cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~--~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
..++|+|++|+|||+|+..++..+.. .+.+|+|++.++-... +...+. ....+++.+. . ..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e-l~~al~----------~~~~~~f~~~----y--~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE-FINSIR----------DGKGDSFRRR----Y--RE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHH----------hccHHHHHHH----h--hc
Confidence 34899999999999999999988875 4789999997542221 111110 0112222222 1 25
Q ss_pred ccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 199 IDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 199 ~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
+++++||.+..+... + ....++. .+.+.+.+.+..||++++.
T Consensus 378 ~DLLlIDDIq~l~gk-e-----------~tqeeLF----~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 378 MDILLVDDIQFLEDK-E-----------STQEEFF----HTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CCEEEEehhccccCC-H-----------HHHHHHH----HHHHHHHhcCCCEEEecCC
Confidence 799999999977631 1 1112233 3444445667777776664
No 290
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=2.3e-05 Score=72.08 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
=+++|+++.|.|++|+|||||+..++.......+.+ +++.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g 67 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGD 67 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECC
Confidence 467999999999999999999998887655545544 4443
No 291
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.00 E-value=3.2e-05 Score=68.71 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+++|+++.|.|++|+|||||+..++.....
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 579999999999999999999988877654
No 292
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=4.5e-05 Score=66.67 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++| ++.|.||+|+|||||+..++.......+.+.|
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 5678 99999999999999998888765544555543
No 293
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.00 E-value=3.6e-05 Score=67.26 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 36799999999999999999998887765544555543
No 294
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.00 E-value=3.1e-05 Score=70.35 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 679999999999999999999888776544444443
No 295
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.99 E-value=1.2e-05 Score=76.70 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+++|+++.|.|++|+|||||+..++.......+.+ +++.
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG 85 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKD 85 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECC
Confidence 56999999999999999999998887665555665 4554
No 296
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.99 E-value=6e-06 Score=71.79 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH--HhcCCeEEEEecCCCCC--h-HHH-HHcCCCCCCeEEeCCCCHHHH---
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENALD--P-SLA-EAMGIDAENLLIAQPDSAENL--- 186 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~--~~~g~~v~~i~~E~~~~--~-~~~-~~~g~~~~~l~i~~~~~~e~~--- 186 (315)
-+.+|+++.|.|++|+|||||+..++... ....+.+. ++.+.... . .+. ..+++.+++.......+.+++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL-FKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE-ECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 35699999999999999999998887763 23445554 44332211 1 222 224444333222222222222
Q ss_pred ------------HHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 021239 187 ------------LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLN 254 (315)
Q Consensus 187 ------------~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~in 254 (315)
+...+.++ .+|+++++|....-... .....+.+.++++ .+.+.++|+++
T Consensus 101 ~~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD~-------------~~~~~l~~~L~~~----~~~~~tiii~s 161 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLDI-------------DALRLVAEVINKL----REEGKSVLIIT 161 (200)
T ss_pred ccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEe
Confidence 22223332 47899999977654410 1122344555544 33588999999
Q ss_pred cccccc
Q 021239 255 QVRFSA 260 (315)
Q Consensus 255 q~~~~~ 260 (315)
|.....
T Consensus 162 h~~~~~ 167 (200)
T cd03217 162 HYQRLL 167 (200)
T ss_pred cCHHHH
Confidence 876543
No 297
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.99 E-value=2e-05 Score=78.52 Aligned_cols=35 Identities=37% Similarity=0.500 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+.+.|.||+|+|||||+..++.......+.+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 67999999999999999999988876665555554
No 298
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.99 E-value=2.6e-05 Score=79.83 Aligned_cols=58 Identities=28% Similarity=0.307 Sum_probs=40.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC--CCCChHHHHHcCCCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE--NALDPSLAEAMGIDAE 173 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E--~~~~~~~~~~~g~~~~ 173 (315)
-+++|+.+.|.|++|||||||+.-+..-.....|.+.+=..+ .-....+.+.+|+.++
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 488999999999999999999988877776666665442222 1122245566666554
No 299
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.98 E-value=3.6e-05 Score=70.05 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~ 70 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS 70 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3679999999999999999999988766544444443
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.98 E-value=7e-05 Score=69.39 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=59.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---------HHHHHcCCCCCCeEEeCCCC-----
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---------SLAEAMGIDAENLLIAQPDS----- 182 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---------~~~~~~g~~~~~l~i~~~~~----- 182 (315)
..++.++.|.|+||+|||||+..++......|.+|.+++.+..... .+......++ ..++....+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 109 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDP-GAFIRSMPTRGHLG 109 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCC-CceeeecCcccccc
Confidence 3478999999999999999999999999888999999998865532 1122222222 222222221
Q ss_pred -HHHHHHHHHHHHHcCCccEEeehhHh
Q 021239 183 -AENLLSVVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 183 -~e~~~~~i~~l~~~~~~~lVVIDsl~ 208 (315)
.......+...++..++++|+||+..
T Consensus 110 ~~~~~~~~~~~~l~~~g~D~viidT~G 136 (300)
T TIGR00750 110 GLSQATRELILLLDAAGYDVIIVETVG 136 (300)
T ss_pred chhHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 11112222223455789999999864
No 301
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.98 E-value=3.4e-05 Score=67.96 Aligned_cols=38 Identities=29% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
+++|+++.|.|++|+|||||+..++.......+.+ +++
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i-~~~ 65 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL-KVL 65 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEC
Confidence 67999999999999999999998886544444444 443
No 302
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.4e-05 Score=70.87 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+.|..-++++||||+|||.|+...|.+.. +.||-.-.+. ...+-+| ....++.-+-++.+
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~-----a~firvvgse--fvqkylg------------egprmvrdvfrlak 245 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGSE--FVQKYLG------------EGPRMVRDVFRLAK 245 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccc-----hheeeeccHH--HHHHHhc------------cCcHHHHHHHHHHh
Confidence 677777899999999999999987765543 3343321110 0111122 22345555566777
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHH----hccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL----CQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~----~~~~i~VI~inq~~~~~ 260 (315)
++.|.+|+||.+.++. ...++...|.. |++.++|..|.+-+ ...|+-||+.+.-.+..
T Consensus 246 enapsiifideidaia-tkrfdaqtgad------revqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 246 ENAPSIIFIDEIDAIA-TKRFDAQTGAD------REVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred ccCCcEEEeehhhhHh-hhhcccccccc------HHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 8899999999999998 46666554332 33444444444333 34577777766554443
No 303
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.97 E-value=2.9e-05 Score=68.14 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=74.5
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh----------------HHHHHcCCCCCCeEEeCCCCHHHH
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP----------------SLAEAMGIDAENLLIAQPDSAENL 186 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~----------------~~~~~~g~~~~~l~i~~~~~~e~~ 186 (315)
-++.||||+||||.|..+..-....|.++..+..+.+-+. ..++.+|+-++--........+.-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 3678999999999999988877778998988888765432 235555555543333333344444
Q ss_pred HHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 187 LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 187 ~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
++++...++...-..+++|....+-- +.+. .++.+++++| .+.+..++++|-+
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVEL---ft~h----------~~l~~I~~~L----ek~~~rl~~V~Li 137 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVEL---FTHH----------DSLNKIFRKL----EKLDYRLVAVNLI 137 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEE---Eecc----------chHHHHHHHH----HHcCceEEEEEee
Confidence 56666666666678899998776531 1000 0234455555 4467777776654
No 304
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.97 E-value=3.7e-05 Score=67.04 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 66 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 3679999999999999999999988876554445543
No 305
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.97 E-value=3e-05 Score=72.83 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=29.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~ 80 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE
Confidence 6799999999999999999999888665444555543
No 306
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.96 E-value=3.2e-05 Score=69.79 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=25.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+++|+++.|.|++|+|||||+..++....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56999999999999999999988877654
No 307
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=2.8e-05 Score=71.05 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 4679999999999999999999988765544445543
No 308
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.96 E-value=9.6e-05 Score=61.57 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=75.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCC----CCC-eEEeCCCCHHHHHHHHHHHHHc
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGID----AEN-LLIAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~----~~~-l~i~~~~~~e~~~~~i~~l~~~ 196 (315)
.++|.|+.-||||++|-.++.+. ++.++||.+-..++.++.+++... ++. ..+..+.+... .+... .
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~---~~~v~YvAT~~a~D~Em~~RI~~Hr~rRp~~W~tvE~~~~l~~---~L~~~--~ 73 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGES---GGQVLYVATGRAFDDEMQERIAHHRARRPEHWRTVEAPLDLAT---LLEAL--I 73 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhh---CCceEEEEecCCCCHHHHHHHHHHHhcCCCcceEEeccccHHH---HHHhc--c
Confidence 68999999999999999887763 788999999999988766665322 222 11222223222 22222 1
Q ss_pred CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecccccc
Q 021239 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ-SHTLIIFLNQVRFSA 260 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~-~~i~VI~inq~~~~~ 260 (315)
.+-++|+||+++.+....-+.++..-.. .+.+...+..|...+.. .+-.|+++|.+-..+
T Consensus 74 ~~~~~VLvDcLt~wvtNll~~~e~~~~~----~~~~~~~~~~L~~al~~~~~~~ilVsNEvG~Gi 134 (175)
T COG2087 74 EPGDVVLVDCLTLWVTNLLFAGEKDWSA----EAAIEAEIEALLAALSRAPGTVVLVSNEVGLGI 134 (175)
T ss_pred cCCCEEEEEcHHHHHHHHHhccccccch----hhhHHHHHHHHHHHHhcCCccEEEEecCccCCc
Confidence 2348999999998874333322211111 12233334444433333 356788888886544
No 309
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.96 E-value=4.3e-05 Score=68.73 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|+++.|.|++|+|||||+..++...
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999999998887654
No 310
>PF05729 NACHT: NACHT domain
Probab=97.96 E-value=5.5e-05 Score=62.66 Aligned_cols=122 Identities=16% Similarity=0.263 Sum_probs=64.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCC------eEEEEecCCCCChHHHHHcCCCCCCeEEeC-CCCHHHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGG------YCAYLDVENALDPSLAEAMGIDAENLLIAQ-PDSAENLLSVVDTLT 194 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~------~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~-~~~~e~~~~~i~~l~ 194 (315)
++.|.|+||+|||+++..++......+. -++|+............. +.+..... .............+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~~ 77 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRS----LADLLFDQLPESIAPIEELLQELL 77 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccch----HHHHHHHhhccchhhhHHHHHHHH
Confidence 6889999999999999999998886542 234455433332211000 00000000 011111111233344
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
...+.-++|||.+..+...... .....+...+..+.....-.++.++++....
T Consensus 78 ~~~~~~llilDglDE~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQS----------QERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred HcCCceEEEEechHhcccchhh----------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 4566778999999988742111 0111233445555433223578888887543
No 311
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.96 E-value=0.00011 Score=66.84 Aligned_cols=114 Identities=23% Similarity=0.415 Sum_probs=74.2
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHHc---
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAM--- 168 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~~--- 168 (315)
....+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+.+++.+...+ ...|+|....+.... +..+.+
T Consensus 47 ~~~~e~L~TGIr~ID~l~p---ig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~ 123 (274)
T cd01133 47 STKTEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKES 123 (274)
T ss_pred cCcCcccccCceeeeccCC---cccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhc
Confidence 3566889999999999986 7799999999999999999999999888754 345666655444443 222221
Q ss_pred CCCCCCeE-EeCCCC--HHHH------HHHHHHHHHc-CCccEEeehhHhhhc
Q 021239 169 GIDAENLL-IAQPDS--AENL------LSVVDTLTKS-GSIDVIVVDSVAALI 211 (315)
Q Consensus 169 g~~~~~l~-i~~~~~--~e~~------~~~i~~l~~~-~~~~lVVIDsl~~l~ 211 (315)
+.-..-+. +...+. .++. ....+.+..+ +.--++++||++.+.
T Consensus 124 ~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 124 GVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred CCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 21111122 222222 2222 2334445555 555688999999876
No 312
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.96 E-value=4e-05 Score=67.82 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH-----HhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA-----QKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~-----~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++... ....+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 63 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL 63 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEE
Confidence 36799999999999999999999888776 44445543
No 313
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.96 E-value=5.6e-05 Score=76.23 Aligned_cols=56 Identities=27% Similarity=0.349 Sum_probs=38.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC---CChHHHHHcCCCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAE 173 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~---~~~~~~~~~g~~~~ 173 (315)
+++|+.+.|.|++|+|||||+..++.......+.+. ++..+- ....+.+.+++.++
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL-LDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE-ECCEEhhhcCHHHHHhhceEEcc
Confidence 679999999999999999999988887766666654 443221 11234555665544
No 314
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.95 E-value=4.1e-05 Score=77.30 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=38.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC---CChHHHHHcCCCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAE 173 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~---~~~~~~~~~g~~~~ 173 (315)
+++|+.+.|.|++|+|||||+..++... ...|.+ +++..+- ....+.+.+++.++
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL-KINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEE-EECCEecccCCHHHHHhheEEecC
Confidence 6799999999999999999999988877 555554 4443211 11234555665544
No 315
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.95 E-value=3.9e-05 Score=69.99 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=63.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHH--HHhcCCeEEEEecCCCCCh-----HHHHHcCCCCCCeEEeCCCCHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKE--AQKLGGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENLLSVV 190 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~--~~~~g~~v~~i~~E~~~~~-----~~~~~~g~~~~~l~i~~~~~~e~~~~~i 190 (315)
+...++.|+|.+|+|||+||.+++.. ....-..++|++....... ..++.++...... ....+.++....+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l 94 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--SDPKDIEELQDQL 94 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS--SCCSSHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 77889999999999999999999877 3334467889988766543 3455666554333 3455677777888
Q ss_pred HHHHHcCCccEEeehhHhh
Q 021239 191 DTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~~ 209 (315)
.+.+... .-++|+|.+..
T Consensus 95 ~~~L~~~-~~LlVlDdv~~ 112 (287)
T PF00931_consen 95 RELLKDK-RCLLVLDDVWD 112 (287)
T ss_dssp HHHHCCT-SEEEEEEEE-S
T ss_pred hhhhccc-cceeeeeeecc
Confidence 7776654 78999997553
No 316
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=0.00015 Score=66.06 Aligned_cols=88 Identities=10% Similarity=0.197 Sum_probs=63.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
+|+.+.+.|++|+||||++..++..+..++.++.+++.+..... .+++.++ +.+....+.+++.+.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~-----~~~~~~~~~~~l~~~l~~ 148 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-----FEVIAVRDEAAMTRALTY 148 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC-----ceEEecCCHHHHHHHHHH
Confidence 67899999999999999999999888777889999998854311 1222333 223333455666666666
Q ss_pred HHHcCCccEEeehhHhhhc
Q 021239 193 LTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~l~ 211 (315)
+.+..+.++|+||......
T Consensus 149 l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 149 FKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHhcCCCCEEEEECCCCCc
Confidence 6444578999999877654
No 317
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.95 E-value=2.2e-05 Score=69.10 Aligned_cols=38 Identities=32% Similarity=0.542 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+.+|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 46799999999999999999998877665545555543
No 318
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.94 E-value=3.7e-05 Score=66.96 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+|+.++|+||+|+|||||+..++....
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHH
Confidence 459999999999999999999985543
No 319
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.94 E-value=5.2e-05 Score=68.49 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 6799999999999999999999888766555555543
No 320
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=8.9e-05 Score=72.28 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=48.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
.-..|+|++|+|||+|+..++..+... +.+|+|++.+.-.. .....+. ....+++.+..+ .+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~----------~~~~~~f~~~~~-----~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMK----------EGKLNEFREKYR-----KK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHh----------cccHHHHHHHHH-----hc
Confidence 358999999999999999998887654 56899998653211 1111110 112233332221 26
Q ss_pred ccEEeehhHhhhc
Q 021239 199 IDVIVVDSVAALI 211 (315)
Q Consensus 199 ~~lVVIDsl~~l~ 211 (315)
+++++||.++.+.
T Consensus 195 ~dvLlIDDi~~l~ 207 (440)
T PRK14088 195 VDVLLIDDVQFLI 207 (440)
T ss_pred CCEEEEechhhhc
Confidence 8999999999876
No 321
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=3.8e-05 Score=70.26 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 65 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR 65 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4679999999999999999999888776544444543
No 322
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.93 E-value=4.8e-05 Score=66.95 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 62 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 3679999999999999999999988876555555554
No 323
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.93 E-value=3.6e-06 Score=75.36 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred EEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 125 IYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 125 i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
|.|||||||||+|..+.......+.++.++.++.+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 5899999999999999998888899999999987765
No 324
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.92 E-value=0.00019 Score=60.04 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=60.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC----ChHHHHHcC-CCCC----CeEEeCCCCHH------HH
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----DPSLAEAMG-IDAE----NLLIAQPDSAE------NL 186 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~----~~~~~~~~g-~~~~----~l~i~~~~~~e------~~ 186 (315)
++.|++++|.||||.|..++..++..|.+|+++-|=... +....++++ +... ...+...+..+ +.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 677888889999999999999999999999996654332 223455552 1110 00111111112 33
Q ss_pred HHHHHHHHHcCCccEEeehhHhhhcc
Q 021239 187 LSVVDTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 187 ~~~i~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
.+..++.+....+++||+|.+.....
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~ 109 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALG 109 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhh
Confidence 44556667778999999999998864
No 325
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=3e-05 Score=71.30 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI 69 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4679999999999999999999988876554445543
No 326
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.92 E-value=4e-05 Score=76.18 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~ 69 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4679999999999999999999888766544444443
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.9e-05 Score=76.40 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+..-+-+++|||||||||.||...|.++- .=||+... +++...+ ....|..+..+-+-.+
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag-----~NFisVKG---PELlNkY-----------VGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAG-----ANFISVKG---PELLNKY-----------VGESERAVRQVFQRAR 601 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhcc-----CceEeecC---HHHHHHH-----------hhhHHHHHHHHHHHhh
Confidence 566667799999999999999988876663 33555322 1221111 1122333333333345
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...|.+|+.|.+.++.++-.-+. ...-.|.+.+.|-.|-.+-.+.|+.||.-+.-=+.+
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~------s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEG------SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCC------chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 56899999999999997532221 223456677777777666567788888655543444
No 328
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.91 E-value=7e-05 Score=66.31 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 79 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 367999999999999999999998887654444444
No 329
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=5e-05 Score=70.99 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.+
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i 85 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV 85 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 46799999999999999999999888765555555543
No 330
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=1.6e-05 Score=68.88 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--ChHHHHHcCCCCCCe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DPSLAEAMGIDAENL 175 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~~~~~~~~g~~~~~l 175 (315)
+++|++..|.||+|+|||||+..++.+....++.|.|....-+. ...+++..++-+++-
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s 84 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNS 84 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCc
Confidence 67999999999999999999999999998888899887754332 236677777666643
No 331
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=9.4e-05 Score=72.16 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=49.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCcc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~ 200 (315)
.-+.|+|++|+|||+|+..++..+...+.+++|++.+.-.. .....+. ....+. ++.. -..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~----------~~~~~~----f~~~--~~~~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIR----------SGEMQR----FRQF--YRNVD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHh----------cchHHH----HHHH--cccCC
Confidence 45789999999999999999988887889999999643211 1111111 011111 2221 13689
Q ss_pred EEeehhHhhhc
Q 021239 201 VIVVDSVAALI 211 (315)
Q Consensus 201 lVVIDsl~~l~ 211 (315)
+++||.++.+.
T Consensus 205 vLiIDDiq~l~ 215 (445)
T PRK12422 205 ALFIEDIEVFS 215 (445)
T ss_pred EEEEcchhhhc
Confidence 99999998775
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.90 E-value=0.00015 Score=68.47 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
-+|.+|++|..+.-... ..|+. +...|+.|. +++|.+-++|+|.-..+
T Consensus 443 LkP~~i~LDEPTSALD~------------SVQaQ-vv~LLr~LQ---~k~~LsYLFISHDL~Vv 490 (534)
T COG4172 443 LKPELILLDEPTSALDR------------SVQAQ-VLDLLRDLQ---QKHGLSYLFISHDLAVV 490 (534)
T ss_pred cCCcEEEecCCchHhhH------------HHHHH-HHHHHHHHH---HHhCCeEEEEeccHHHH
Confidence 46899999977755521 13333 667788887 89999999999987666
No 333
>PF13245 AAA_19: Part of AAA domain
Probab=97.90 E-value=1.7e-05 Score=58.04 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=38.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc----CCeEEEEecCCCCChHHHHHc
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVENALDPSLAEAM 168 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~----g~~v~~i~~E~~~~~~~~~~~ 168 (315)
+.+.+|.||||+|||+++.+.+...... +.+++++++.......+.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5678889999999999999999888865 788999987655544455554
No 334
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.90 E-value=3.8e-05 Score=70.06 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
-+++|+++.|.|++|+|||||+..++.......+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 36799999999999999999999887665433333
No 335
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=4.8e-05 Score=69.31 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 36799999999999999999999887765544555543
No 336
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.89 E-value=3.1e-05 Score=72.75 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+.+|+++.|.|++|+|||||+..++.....
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 679999999999999999999888766543
No 337
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.89 E-value=0.00013 Score=64.58 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
+.+|+++.|.|++|+|||||+..++.......+.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 36 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGT 36 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 5789999999999999999999888765443333
No 338
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.89 E-value=9.6e-05 Score=76.65 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=50.4
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|++++..++|+||||+|||+++..++... +.+.++++..+-... .....++.+..+-+..
T Consensus 207 ~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~i~i~~~~i~~~----------------~~g~~~~~l~~lf~~a 267 (733)
T TIGR01243 207 LGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYFISINGPEIMSK----------------YYGESEERLREIFKEA 267 (733)
T ss_pred cCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEecHHHhcc----------------cccHHHHHHHHHHHHH
Confidence 468888999999999999999999987765 445555553211100 0011122222222223
Q ss_pred HcCCccEEeehhHhhhcc
Q 021239 195 KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~ 212 (315)
....+.+|+||.+..+.+
T Consensus 268 ~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 268 EENAPSIIFIDEIDAIAP 285 (733)
T ss_pred HhcCCcEEEeehhhhhcc
Confidence 445789999999998874
No 339
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.89 E-value=7.6e-05 Score=73.73 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~ 61 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence 3679999999999999999999888876554455553
No 340
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=4.8e-05 Score=69.50 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 679999999999999999999988876554445543
No 341
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.88 E-value=9.2e-05 Score=67.48 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=42.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHH----HHHHHHHcC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLS----VVDTLTKSG 197 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~----~i~~l~~~~ 197 (315)
+++|+|-|||||||+|.++.......+..+.+++.+. ++++-+. +.+......... .+.+.+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~---------~~~~~~~--y~~~~~Ek~~R~~l~s~v~r~ls-- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS---------LGIDRND--YADSKKEKEARGSLKSAVERALS-- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH---------HH-TTSS--S--GGGHHHHHHHHHHHHHHHHT--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc---------cccchhh--hhchhhhHHHHHHHHHHHHHhhc--
Confidence 7899999999999999999999888888898888322 1122222 222222333333 3444432
Q ss_pred CccEEeehhHhhhc
Q 021239 198 SIDVIVVDSVAALI 211 (315)
Q Consensus 198 ~~~lVVIDsl~~l~ 211 (315)
.-.+||+|+.+.+.
T Consensus 70 ~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 70 KDTIVILDDNNYIK 83 (270)
T ss_dssp T-SEEEE-S---SH
T ss_pred cCeEEEEeCCchHH
Confidence 34899999998665
No 342
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=0.0001 Score=65.91 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4679999999999999999999988776544445543
No 343
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.88 E-value=4.2e-05 Score=75.83 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.||+|+|||||+..++.......+.+.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 62 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3668999999999999999999888876554445544
No 344
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.88 E-value=9.7e-05 Score=65.92 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++|+++.|.|++|+|||||+..++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999999988876
No 345
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=4.4e-05 Score=68.73 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=58.9
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEE-E-ecCCCCCh-HHHHHcCCCCCCeEEeCCC
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAY-L-DVENALDP-SLAEAMGIDAENLLIAQPD 181 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~-i-~~E~~~~~-~~~~~~g~~~~~l~i~~~~ 181 (315)
..+|-++. +.+|+.+.|.|++|+||||++..++...... +..++| + ..|...+. +..+.+ ..-+.+...+
T Consensus 5 ~~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I---~~~~v~~~~~ 78 (249)
T cd01128 5 RVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV---KGEVIASTFD 78 (249)
T ss_pred hheeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---ccEEEEecCC
Confidence 34566665 6689999999999999999998888776543 222333 3 33333333 333333 1112222222
Q ss_pred -CHH-------HHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 182 -SAE-------NLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 182 -~~e-------~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
+.. .....++.+...+..-+++||+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence 111 233334444445667799999999886
No 346
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=7.6e-05 Score=68.48 Aligned_cols=133 Identities=12% Similarity=0.151 Sum_probs=76.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc----CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~----g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
+.-..++++.||||+|||+||..+|....-+ ..+...+.. .......+-++- .-.-...+++.+.+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi--nshsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI--NSHSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE--ehhHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 3346789999999999999999998876532 112222211 001111111110 01124567788888
Q ss_pred HHHcC-CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccC
Q 021239 193 LTKSG-SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAK 261 (315)
Q Consensus 193 l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~ 261 (315)
+++.. ..-.|.||.+.++..........++.. ...|.+...|.++-++-+..|+.++.++.+.+.++
T Consensus 244 Lv~d~~~lVfvLIDEVESLa~aR~s~~S~~Eps--DaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD 311 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESLAAARTSASSRNEPS--DAIRVVNALLTQLDRLKRYPNVLILATSNLTDSID 311 (423)
T ss_pred HHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCc--hHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHH
Confidence 88654 456888998887752111111111111 12344555566665555778999999999877753
No 347
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.87 E-value=7e-05 Score=67.74 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 569999999999999999999888877766666664
No 348
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.4e-05 Score=74.14 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=48.6
Q ss_pred hcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHH
Q 021239 112 LGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (315)
Q Consensus 112 l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~ 191 (315)
|| |-+|+| +++.||||+|||.||..+|.++ .|=||....+.-.+ +++-. -+..+.+.+.
T Consensus 332 LG-GKLPKG--VLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEFdE-----------m~VGv--GArRVRdLF~ 390 (752)
T KOG0734|consen 332 LG-GKLPKG--VLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEFDE-----------MFVGV--GARRVRDLFA 390 (752)
T ss_pred cc-CcCCCc--eEEeCCCCCchhHHHHHhhccc-----CCCeEeccccchhh-----------hhhcc--cHHHHHHHHH
Confidence 56 789988 8899999999999999988776 24344433222111 11100 1122222222
Q ss_pred HHHHcCCccEEeehhHhhhc
Q 021239 192 TLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~ 211 (315)
. .+...|.+|+||.+.++-
T Consensus 391 a-Ak~~APcIIFIDEiDavG 409 (752)
T KOG0734|consen 391 A-AKARAPCIIFIDEIDAVG 409 (752)
T ss_pred H-HHhcCCeEEEEechhhhc
Confidence 2 234579999999999886
No 349
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.86 E-value=5.3e-05 Score=68.54 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=51.7
Q ss_pred CCC-CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEE-ecCCCCCh---HHHHHcCCCCCCeEEeCCCCHHHHHHHHH
Q 021239 117 LPK-GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL-DVENALDP---SLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (315)
Q Consensus 117 l~~-G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i-~~E~~~~~---~~~~~~g~~~~~l~i~~~~~~e~~~~~i~ 191 (315)
+++ +.+++|+|++|+||||++..++.........+.++ ....+... ..+..+|++.+... .......+.+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~--~~~~~~~l~~~l~ 116 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRD--KAALLRELEDFLI 116 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHH
Confidence 444 44899999999999999999877664322222232 22222111 24555666543210 0001123333343
Q ss_pred HHHHcCCccEEeehhHhhhc
Q 021239 192 TLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~ 211 (315)
.....++..+++||....+.
T Consensus 117 ~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHhCCCCeEEEEECcccCC
Confidence 44445677899999877654
No 350
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00016 Score=69.08 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHh----cCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLS 188 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~----~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~ 188 (315)
.+.++.++||+|+||||.+..+|..+.. .|.+|.+++.+.-... .+++.+|++. ....+.+++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-----~~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-----KAIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-----EeeCcHHHHHH
Confidence 3569999999999999999999987763 4678999998854321 2344455532 22334455555
Q ss_pred HHHHHHHcCCccEEeehhHhhhc
Q 021239 189 VVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 189 ~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.+..+ .+.++|+||......
T Consensus 248 ~L~~~---~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 248 EITQS---KDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHh---CCCCEEEEcCCCCCc
Confidence 55443 578999999887543
No 351
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.86 E-value=0.00012 Score=68.66 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---------HHHHHcCCCCCCeEEeCCC--C---HH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---------SLAEAMGIDAENLLIAQPD--S---AE 184 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---------~~~~~~g~~~~~l~i~~~~--~---~e 184 (315)
+.-++.|.|+||+|||||+..++..+...|.+|.+++.+.+... .|++.++.++..+...... . ..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 45689999999999999999999999888999999998876542 3455555544422222111 1 12
Q ss_pred HHHHHHHHHHHcCCccEEeehhHhhh
Q 021239 185 NLLSVVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 185 ~~~~~i~~l~~~~~~~lVVIDsl~~l 210 (315)
......-.++...++++|+||....-
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~ 160 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVG 160 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCc
Confidence 22222333345678999999977643
No 352
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.86 E-value=8.1e-05 Score=67.96 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=26.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+.+|+++.|.|++|+|||||+..++.....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999999988766543
No 353
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.86 E-value=5.7e-05 Score=77.75 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+.-++.......|.+.
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 779999999999999999999988887776666654
No 354
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.9e-05 Score=74.85 Aligned_cols=117 Identities=20% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
=|+.+-.-++++||||||||+++..+|.++.. .-+++...+ . +.......|..+..+-+..
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---nFlsvkgpE-----L-----------~sk~vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGM---NFLSVKGPE-----L-----------FSKYVGESERAIREVFRKA 523 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcC---CeeeccCHH-----H-----------HHHhcCchHHHHHHHHHHH
Confidence 36888888999999999999999999888743 333333211 1 1111223344444444444
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
++..|.+|++|.+.++... .- ++.+ +.+.|.+++.|..+-.+-...++.||.-+.-
T Consensus 524 R~~aP~IiFfDEiDsi~~~-R~-g~~~----~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR 579 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGS-RG-GSSS----GVTDRVLSQLLTEMDGLEALKNVLVIAATNR 579 (693)
T ss_pred hhcCCeEEehhhHHhHhhc-cC-CCcc----chHHHHHHHHHHHcccccccCcEEEEeccCC
Confidence 5567899999999998732 21 2221 3566778888888877666677777755443
No 355
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=4.9e-05 Score=71.26 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+.+|+++.|.|++|+|||||+..++....
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 367999999999999999999998887653
No 356
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.85 E-value=5.3e-05 Score=75.27 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~ 64 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEE
Confidence 46799999999999999999998887665444555543
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=97.85 E-value=0.0001 Score=74.49 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+-+.+|+++.|.|++|+|||||+..++.......+.+
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I 396 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV 396 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 3578999999999999999999998887654444443
No 358
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.85 E-value=9.9e-05 Score=76.54 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+++..-++|+||||+|||+++..+|... +.+.+.+...+ ... ......+..+..+-....
T Consensus 483 g~~~~~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~-----l~~-----------~~vGese~~i~~~f~~A~ 543 (733)
T TIGR01243 483 GIRPPKGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPE-----ILS-----------KWVGESEKAIREIFRKAR 543 (733)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHH-----Hhh-----------cccCcHHHHHHHHHHHHH
Confidence 55666669999999999999999998775 33333333211 100 011122333333333445
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+|+||.+..+.+...... ......+.+.+.|..+..+....++.||.++.--..+
T Consensus 544 ~~~p~iifiDEid~l~~~r~~~~-----~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 544 QAAPAIIFFDEIDAIAPARGARF-----DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred hcCCEEEEEEChhhhhccCCCCC-----CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 56789999999999985221110 1112234455566665544445677777776554444
No 359
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.84 E-value=9.1e-05 Score=66.45 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhc
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL 147 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~ 147 (315)
-+++|+++.|.|++|+|||||+..++......
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 36799999999999999999998887665443
No 360
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.84 E-value=4.8e-05 Score=75.34 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=61.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHH-cCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA-MGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~-~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~ 199 (315)
.-++|+||||+|||+++..+|..+ +.+.++++..+ .... .| .....+...+.. .....+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~-----~~~~~~g-----------~~~~~l~~~f~~-a~~~~p 148 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSD-----FVEMFVG-----------VGASRVRDLFEQ-AKKNAP 148 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHH-----HHHHHhc-----------ccHHHHHHHHHH-HHhcCC
Confidence 348999999999999999997664 44444444211 1110 11 011222222222 234578
Q ss_pred cEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 200 DVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 200 ~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.+|+||.+..+...... +.. .. .....+.+.+++..+..+....++.||.+++--..+
T Consensus 149 ~Il~iDEid~l~~~r~~-~~~-~~-~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 149 CIIFIDEIDAVGRQRGA-GLG-GG-NDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred CEEEEechhhhhhcccc-CcC-Cc-cHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999998742211 100 00 111223344455544333344567677665544333
No 361
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.00018 Score=61.63 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=82.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--h-HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--P-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~-~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
..|.+..++||=.+|||+-+++-+.++...|.+++.|-..-... . ....+.|...+...+. +..++++.+...-
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~---~~~~i~~~i~~~~ 78 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIP---SDTDIFDEIAALH 78 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecC---ChHHHHHHHHhcc
Confidence 35889999999999999999999999999999998887543221 1 3455667766655554 4566777776654
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
.....+.|.||..+-+-. ++...|.+| +.++|++|++-.-.
T Consensus 79 ~~~~~~~v~IDEaQF~~~------------------~~v~~l~~l---ad~lgi~Vi~~GL~ 119 (201)
T COG1435 79 EKPPVDCVLIDEAQFFDE------------------ELVYVLNEL---ADRLGIPVICYGLD 119 (201)
T ss_pred cCCCcCEEEEehhHhCCH------------------HHHHHHHHH---HhhcCCEEEEeccc
Confidence 444478999999997752 133444444 47889999876544
No 362
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00015 Score=69.86 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=49.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
+..++|+|++|+|||+|+..++..+... +.+++|++.+.-. ......+. ....+++...++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~-~~~~~~~~----------~~~~~~~~~~~~------ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT-NDFVNALR----------NNKMEEFKEKYR------ 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH-HHHHHHHH----------cCCHHHHHHHHH------
Confidence 4568999999999999999998888765 6789999865321 11222111 012333332222
Q ss_pred CccEEeehhHhhhc
Q 021239 198 SIDVIVVDSVAALI 211 (315)
Q Consensus 198 ~~~lVVIDsl~~l~ 211 (315)
.+++++||.++.+.
T Consensus 199 ~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 199 SVDLLLIDDIQFLA 212 (405)
T ss_pred hCCEEEEehhhhhc
Confidence 47899999999875
No 363
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.84 E-value=0.00013 Score=63.06 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
=+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY 58 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 3679999999999999999999988876555555543
No 364
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=0.00012 Score=65.88 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+.+|+++.|.|++|+|||||+..++....
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 367999999999999999999988877654
No 365
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.82 E-value=8.6e-05 Score=74.04 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+.+.|.|++|+|||||+..++.......+.+.
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 3679999999999999999999988877766555554
No 366
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.82 E-value=0.00022 Score=69.84 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=50.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
...+.|+|++|+|||+|+..++..+... +.+++|++.+.-.. .....+. ....+++.+.+ .
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~----------~~~~~~~~~~~------~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALR----------NNTMEEFKEKY------R 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHH----------cCcHHHHHHHH------h
Confidence 3568999999999999999999888776 67899998654221 1222211 01223332222 2
Q ss_pred CccEEeehhHhhhc
Q 021239 198 SIDVIVVDSVAALI 211 (315)
Q Consensus 198 ~~~lVVIDsl~~l~ 211 (315)
.+++++||.++.+.
T Consensus 211 ~~dlLiiDDi~~l~ 224 (450)
T PRK00149 211 SVDVLLIDDIQFLA 224 (450)
T ss_pred cCCEEEEehhhhhc
Confidence 58999999999875
No 367
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=0.00011 Score=60.84 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=34.9
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
+.+.|++|+||||++..++......|.++++++.+....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~ 40 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP 40 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 678999999999999999999999999999999886443
No 368
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=8e-05 Score=68.49 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI 64 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 367999999999999999999988876554444444
No 369
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.81 E-value=0.0001 Score=69.25 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 36799999999999999999998887654
No 370
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00016 Score=70.65 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=61.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh--cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~--~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
.-+.|+|++|+|||+|+..++..+.. .+.+|+|++.++-. ......++-. .+.+ +.+.+. -..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-~~~~~~l~~~-----------~~~~-~~~~~~--~~~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-RKAVDILQKT-----------HKEI-EQFKNE--ICQ 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHHHHh-----------hhHH-HHHHHH--hcc
Confidence 45889999999999999888776553 47899999975422 1222222100 0111 111111 136
Q ss_pred ccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 199 IDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 199 ~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
+++++||.++.+.... . ....+..+.+...+.+..+|++++.
T Consensus 207 ~dvLiIDDiq~l~~k~------------~----~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 207 NDVLIIDDVQFLSYKE------------K----TNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred CCEEEEeccccccCCH------------H----HHHHHHHHHHHHHHcCCcEEEECCC
Confidence 8999999998775210 1 1233444445556667777777654
No 371
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.81 E-value=6.3e-05 Score=77.73 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++.......|.+.
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 679999999999999999999888877766555544
No 372
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.0002 Score=62.38 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=38.1
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-----cCCeEEEEecCCCCC----h-HHHHHcCCCCC
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENALD----P-SLAEAMGIDAE 173 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-----~g~~v~~i~~E~~~~----~-~~~~~~g~~~~ 173 (315)
..++++.++.|.||+|||||||+..+-.-.-. -.+.+.| +.++-.. . ...+++|+..+
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~-~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL-DGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE-CCeeccCCCCCHHHHHHHheeecc
Confidence 37899999999999999999999876443321 1244444 3333322 2 45667777654
No 373
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=97.80 E-value=0.00014 Score=71.65 Aligned_cols=114 Identities=18% Similarity=0.350 Sum_probs=74.3
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|-++. +-+|.-..|.|++|+|||+|++.++.+....+-.|+|...-+.... +..+.+ +
T Consensus 139 ~~i~~pl~TGi~aID~l~p---igrGQr~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~~~~~ 215 (501)
T TIGR00962 139 KSVHEPLQTGIKAIDAMIP---IGRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEHG 215 (501)
T ss_pred CCcCceeccCCceeeccCC---cccCCEEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHHHhcC
Confidence 4556789999999999987 7799999999999999999988777666555556788876555443 222222 2
Q ss_pred CCCCCeEEe-CCCC--HHHHH------HHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIA-QPDS--AENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~-~~~~--~e~~~------~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.-..-+.+. ..+. ..... .+.+.+..++.--++++|+++.+.
T Consensus 216 ~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A 266 (501)
T TIGR00962 216 AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHA 266 (501)
T ss_pred ccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHH
Confidence 111222222 2222 22221 223334445566799999999875
No 374
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.80 E-value=0.00011 Score=74.43 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=31.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++......+|.+.
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 679999999999999999999998887766666554
No 375
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=6.8e-05 Score=68.15 Aligned_cols=89 Identities=22% Similarity=0.360 Sum_probs=62.1
Q ss_pred cccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCC
Q 021239 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQP 180 (315)
Q Consensus 101 i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~ 180 (315)
+|--+|.| +. |+-.|=.-++++||||+|||-||...|.++- ..||+...+ ....+-+|
T Consensus 151 LPIKFPql---Ft-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSSS--DLvSKWmG----------- 208 (439)
T KOG0739|consen 151 LPIKFPQL---FT-GKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSS--DLVSKWMG----------- 208 (439)
T ss_pred ecccchhh---hc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEEeehH--HHHHHHhc-----------
Confidence 44445543 44 6777777899999999999999988877662 456663211 12222222
Q ss_pred CCHHHHHHHHHHHHHcCCccEEeehhHhhhcc
Q 021239 181 DSAENLLSVVDTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 181 ~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
..|.++..+-++.+++.|.+|+||.+..+..
T Consensus 209 -ESEkLVknLFemARe~kPSIIFiDEiDslcg 239 (439)
T KOG0739|consen 209 -ESEKLVKNLFEMARENKPSIIFIDEIDSLCG 239 (439)
T ss_pred -cHHHHHHHHHHHHHhcCCcEEEeehhhhhcc
Confidence 3466777777777888999999999998873
No 376
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=97.79 E-value=0.00011 Score=72.07 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=74.4
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++++.++.+....+-.|+|...-+.... +..+.+ +
T Consensus 140 ~~v~epl~TGIkaID~l~p---igrGQR~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~l~~~~ 216 (502)
T PRK13343 140 DFVTEPLQTGIKVVDALIP---IGRGQRELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETLREHG 216 (502)
T ss_pred CCCCcccccCCceeccccc---cccCCEEEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEeccChHHHHHHHHHHHhcC
Confidence 4457889999999999987 7799999999999999999988777766555555678776554433 222222 2
Q ss_pred CCCCCeEEe-CCC--CHHHHH------HHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIA-QPD--SAENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~-~~~--~~e~~~------~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.-..-+.+. ..+ +..+.. .+.+.+..++.--++++|+++.+.
T Consensus 217 ~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (502)
T PRK13343 217 ALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHA 267 (502)
T ss_pred ccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHH
Confidence 111222232 222 222222 223444556667799999999875
No 377
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.79 E-value=6.8e-05 Score=74.13 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 55 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI 55 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 367999999999999999999988876554434444
No 378
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.79 E-value=8.5e-05 Score=75.64 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~ 383 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIF 383 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEE
Confidence 5799999999999999999998887665444455544
No 379
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=97.79 E-value=0.0001 Score=71.86 Aligned_cols=114 Identities=16% Similarity=0.288 Sum_probs=73.6
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc-CCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM-GID 171 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~-g~~ 171 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++|+.++.+....+-.|+|...-+.... +..+.+ +-.
T Consensus 119 ~~v~epl~TGI~aID~l~p---igrGQR~~I~g~~g~GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l~~~~ 195 (485)
T CHL00059 119 RSVYEPLQTGLIAIDSMIP---IGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERG 195 (485)
T ss_pred cCCCcccccCceeeccccc---cccCCEEEeecCCCCCHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHhhccc
Confidence 4557789999999999997 6689999999999999999988877766555567788776554443 222222 111
Q ss_pred -CCC-eEE-eCCC--CHHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 172 -AEN-LLI-AQPD--SAENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 172 -~~~-l~i-~~~~--~~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.++ +.+ ...+ ...+. ..+.+.+..++.--++++|+++.+.
T Consensus 196 ~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 196 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred chhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHHH
Confidence 122 222 2222 22222 2223344445566788889998775
No 380
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.78 E-value=0.0001 Score=73.40 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH--HhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~--~~~g~~v~~ 153 (315)
-+.+|+++.|.||+|+|||||+..++... ....+.+.|
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence 46799999999999999999999888875 233445443
No 381
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.78 E-value=7e-05 Score=74.26 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++.......+.+.
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 62 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 4779999999999999999999988876544444543
No 382
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.78 E-value=0.00021 Score=67.81 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=73.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCC--------eE--------EEEecCC--CCCh-HHHHHcCCCCCC---
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG--------YC--------AYLDVEN--ALDP-SLAEAMGIDAEN--- 174 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~--------~v--------~~i~~E~--~~~~-~~~~~~g~~~~~--- 174 (315)
+.+|+++.|.|++|+||||+...++..+...++ +| +.+..|. .+.. ...+.++-++.+
T Consensus 406 ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~ 485 (593)
T COG2401 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNA 485 (593)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhH
Confidence 679999999999999999999888877765443 11 1111111 1110 122222211111
Q ss_pred -------------eEEe----CCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHH
Q 021239 175 -------------LLIA----QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALR 237 (315)
Q Consensus 175 -------------l~i~----~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~ 237 (315)
+.+. +..+...-...+..++ ..++.++++|.+.++... . ...+..+
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll-aerpn~~~iDEF~AhLD~-------------~---TA~rVAr 548 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL-AERPNVLLIDEFAAHLDE-------------L---TAVRVAR 548 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH-hcCCCcEEhhhhhhhcCH-------------H---HHHHHHH
Confidence 0110 0111111122233333 347899999999988731 1 1335677
Q ss_pred HHHHHHhccCcEEEEEecccccc
Q 021239 238 KIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 238 ~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
++.+++++.++|++++.|--+-.
T Consensus 549 kiselaRe~giTlivvThrpEv~ 571 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEVG 571 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHHH
Confidence 78888899999999988865443
No 383
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.78 E-value=8e-05 Score=76.75 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++.......|.+.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 679999999999999999999888877665555543
No 384
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.78 E-value=0.00012 Score=73.25 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
=+++|+.+.|.|++|+|||||+..++.......+.+.
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3679999999999999999999988877765555554
No 385
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.78 E-value=0.00013 Score=69.39 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=69.4
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCCh--HHHHHcCCCCCCe
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDP--SLAEAMGIDAENL 175 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~--~~~~~~g~~~~~l 175 (315)
..++|+..+|.++. +-+|.-.+|.||||+|||||+..++...... +..|++...++.... ...+.+. ..+
T Consensus 152 ~~~~~~rvID~l~P---IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl---g~v 225 (416)
T PRK09376 152 PEDLSTRIIDLIAP---IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK---GEV 225 (416)
T ss_pred Ccccceeeeeeecc---cccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc---CcE
Confidence 47889999999987 5589999999999999999999988877754 333344444443222 2333332 133
Q ss_pred EEeCCCC--------HHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 176 LIAQPDS--------AENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 176 ~i~~~~~--------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.....+. ++...+..+.+...+.--+++||+++.+.
T Consensus 226 v~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 226 VASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHH
Confidence 3333221 12344445555555666699999999886
No 386
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.77 E-value=0.00017 Score=62.60 Aligned_cols=110 Identities=21% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH----
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT---- 194 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~---- 194 (315)
...++.|.|+||+|||+++..+...+...|.+|++...-......+.+..|++...+ ..++.......
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti--------~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTI--------HSFLYRIPNGDDEGR 88 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEH--------HHHTTEECCEECCSS
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhH--------HHHHhcCCccccccc
Confidence 356899999999999999998888887888888888865544445555555432211 00000000000
Q ss_pred -HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 195 -KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 195 -~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
...+.++||||..+.+-. ..+..|...+...++-+|++-...
T Consensus 89 ~~~~~~~vliVDEasmv~~---------------------~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDS---------------------RQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp CC-TSTSEEEESSGGG-BH---------------------HHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred ccCCcccEEEEecccccCH---------------------HHHHHHHHHHHhcCCEEEEECCcc
Confidence 023568999998886652 123344445567788888886543
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.77 E-value=0.0001 Score=64.08 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.6
Q ss_pred CC-cEEEEEecCCCChhHHHHHHHHH
Q 021239 119 KG-RIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 119 ~G-~i~~i~G~~GsGKTtlal~la~~ 143 (315)
+| .++.|.||+|+|||||+..++..
T Consensus 26 ~~~~~~~ltG~Ng~GKStll~~i~~~ 51 (200)
T cd03280 26 ENKRVLVITGPNAGGKTVTLKTLGLL 51 (200)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 45 58999999999999999998843
No 388
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.00019 Score=72.13 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-++||+++.+.||+|+||||++.-+-.-+...+++++
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 4789999999999999999999776666655555543
No 389
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.76 E-value=0.00028 Score=64.11 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=28.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 56999999999999999999998887655444443
No 390
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=8.2e-05 Score=73.85 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+.+|+++.|.||+|+|||||+..++....
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 367999999999999999999988887554
No 391
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.76 E-value=0.00021 Score=63.16 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=58.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHH---cCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEA---MGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~---~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
++....--|+||||.++.+|..++.+|.+|..||.+...+- .|.+. -|.-..++.+...++...+...+.. .+..
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~ 82 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEAS 82 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhc
Confidence 44555667999999999999999999999999999988775 44443 2333445566555544433333333 2334
Q ss_pred CccEEeehhH
Q 021239 198 SIDVIVVDSV 207 (315)
Q Consensus 198 ~~~lVVIDsl 207 (315)
++++|+||.-
T Consensus 83 ~~d~VlvDle 92 (231)
T PF07015_consen 83 GFDFVLVDLE 92 (231)
T ss_pred CCCEEEEeCC
Confidence 6899999974
No 392
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.75 E-value=0.00013 Score=73.76 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+.+.|.|++|+|||||+..++.......+.+
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 56999999999999999999988877766554443
No 393
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.75 E-value=0.00049 Score=59.84 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh----cCCeEEEEecCCCCChHHHHHcCCCCCCeE-EeCCCCHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLDVENALDPSLAEAMGIDAENLL-IAQPDSAENLLSVVD 191 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~----~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~-i~~~~~~e~~~~~i~ 191 (315)
+....-++|+|.+|+|||+++..++..++. ..-.+..+|.....-..... + ..+. +....+.+++...++
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~l~ 109 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLAPLAD-L----PHVAAVAVATDPEEILRLLE 109 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCGGGTT------TTBSS-S-B-SHHHHHHHHH
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccchhhh-h----hhhccccccccHHHHHHHHH
Confidence 334447999999999999999999999887 44566667765431111111 0 0110 111223333222221
Q ss_pred HHH--------------------------------------HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHH
Q 021239 192 TLT--------------------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMT 233 (315)
Q Consensus 192 ~l~--------------------------------------~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~ 233 (315)
.+. +...+-+++||.+..+...... .....+.
T Consensus 110 ~l~~em~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iDe~~~l~~~~~~----------~~~~~~~ 179 (205)
T PF01580_consen 110 ELVEEMERRQALLREAGVRNIDDYNEERGELPDDIFADPWLKELPPIFIVIDEFAALRDSAPD----------DSKKEIM 179 (205)
T ss_dssp HHHHHHHHHHHHHHHCT-SSHHHHHHHHHHHHHTT----B-----EEEEEECTHHHHHHHHHH----------H----HH
T ss_pred HHHHHHHHHHHHHHHcCccchhhHHHHhhhhccccccccccccCchHHHHhhhHHHHHhhcch----------hhHHHHH
Confidence 110 0235578999999998732111 1022356
Q ss_pred HHHHHHHHHHhccCcEEEEEeccc
Q 021239 234 QALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 234 ~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
..+.++.+..+..|+.+|+..|--
T Consensus 180 ~~l~~i~~~gR~~Gi~li~~~Q~p 203 (205)
T PF01580_consen 180 DLLARIARKGRAAGIHLILATQRP 203 (205)
T ss_dssp HHHHHHHHHCGGGTEEEEEEESS-
T ss_pred HHHHHHHHHHHhcCEEEEEEeCCC
Confidence 778888888899999999999863
No 394
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.00013 Score=74.04 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=28.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
|=..+|+++.|.||+|+|||||...++.....
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~ 82 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNG 82 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhccccC
Confidence 46889999999999999999999998877753
No 395
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.74 E-value=0.0003 Score=66.30 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHH----HHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE----NLLSVV 190 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e----~~~~~i 190 (315)
.|+.+..+++|+||||+|||.+|..+|.++ |-..+.++..+-.. ....+.| +++...
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s----------------k~vGEsEk~IR~~F~~A 203 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES----------------ENAGEPGKLIRQRYREA 203 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc----------------CcCCcHHHHHHHHHHHH
Confidence 478889999999999999999999988776 44455555321110 1111223 233333
Q ss_pred HHHH-HcCCccEEeehhHhhhccc
Q 021239 191 DTLT-KSGSIDVIVVDSVAALIPK 213 (315)
Q Consensus 191 ~~l~-~~~~~~lVVIDsl~~l~~~ 213 (315)
.+.. ....+.+|+||.+.++.++
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~ 227 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGR 227 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCC
Confidence 3332 3467999999999999864
No 396
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=97.74 E-value=0.00018 Score=70.43 Aligned_cols=114 Identities=17% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++++.++.+....+-.|+|...-+.... +..+.+ |
T Consensus 140 ~~v~epl~TGI~aID~l~p---igrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l~~~~ 216 (497)
T TIGR03324 140 APVTVPLQTGLKVIDALIP---IGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHG 216 (497)
T ss_pred CCCCchhhcCCEEEeccCC---cccCCEEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHhhhcC
Confidence 4557889999999999987 6799999999999999999988766665544445788776554443 222222 2
Q ss_pred CCCCCeEEe-CCC--CHHHHH------HHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIA-QPD--SAENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~-~~~--~~e~~~------~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.-..-+.+. ..+ ...+.. .+.+.+..++.--++++|+++.+.
T Consensus 217 ~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 217 AMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred CcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHH
Confidence 111122222 222 122221 223344455666799999999775
No 397
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.74 E-value=0.0001 Score=76.23 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++.......|.+.
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 689999999999999999999888877665555443
No 398
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.74 E-value=0.0001 Score=73.02 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 312 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence 5789999999999999999999888765444555543
No 399
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=97.73 E-value=0.00025 Score=69.38 Aligned_cols=113 Identities=20% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++++..+.+....+-.|+|...-+.... ...+.+ |
T Consensus 121 ~~v~epL~TGIkaID~l~p---igrGQR~~Ifg~~gtGKT~lal~~I~~q~~~dv~~V~~~IGer~~ev~~~~~~l~~~g 197 (507)
T PRK07165 121 KTLNEQLYTGIIAIDLLIP---IGKGQRELIIGDRQTGKTHIALNTIINQKNTNVKCIYVAIGQKRENLSRIYETLKEHD 197 (507)
T ss_pred CCCCceeecCchhhhhcCC---cccCCEEEeecCCCCCccHHHHHHHHHhcCCCeEEEEEEccCChHHHHHHHHHhhhcC
Confidence 4567899999999999987 6699999999999999999987776666555556788776554443 222222 2
Q ss_pred CCCCCeEEe-CCCC-HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIA-QPDS-AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~-~~~~-~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.-..-+.+. ..++ .++. ....+.+..+ .--+||+|+++.+.
T Consensus 198 al~~tvvV~atsd~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~DdLTr~A 246 (507)
T PRK07165 198 ALKNTIIIDAPSTSPYEQYLAPYVAMAHAENISYN-DDVLIVFDDLTKHA 246 (507)
T ss_pred ceeeeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhc-CceEEEEcChHHHH
Confidence 111112222 2222 2222 1223344445 66799999998765
No 400
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.73 E-value=0.00019 Score=72.38 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+.+.|.||+|+|||||+..++.......+.+.+
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 6799999999999999999998888777665555543
No 401
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=97.73 E-value=0.00036 Score=66.33 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=94.1
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCC--hhHHHHHHHHHHHhcCCeEEEEecCCCCChH-----------
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASG--KTTLALHVIKEAQKLGGYCAYLDVENALDPS----------- 163 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsG--KTtlal~la~~~~~~g~~v~~i~~E~~~~~~----------- 163 (315)
....+|||++.||.+|| ||+|-|++++|- +.+.+ =..|+..++++-+..+..+++++........
T Consensus 26 ~~~~~STG~~sLD~lLG-GGlPlGs~llIe-Ed~~t~ya~~LlkyF~AEGi~~~h~v~v~~~~~~~~~~LP~~~~~~~~~ 103 (363)
T PF05625_consen 26 GQPLTSTGIPSLDDLLG-GGLPLGSILLIE-EDGTTDYASVLLKYFAAEGIVHGHHVLVASPPEAWLRELPGPVSESEKK 103 (363)
T ss_dssp SSEEE--S-HHHHHHTT-SSEETT-EEEEE-E-SS--THHHHHHHHHHHHHHH-EEEEEE-S-GGGGGG-EEE-------
T ss_pred CCEEEecCChhHHHHhc-CCcccccEEEEe-cCCcCHHHHHHHHHHHHhccccCCeEEEEeCChHHHhhCCCccCcchhc
Confidence 45689999999999999 999999999985 44332 2344455566666667888888862211100
Q ss_pred ---------------------HHHHcC-----------------CCCC----------Ce-EEeCCC-------CHHHHH
Q 021239 164 ---------------------LAEAMG-----------------IDAE----------NL-LIAQPD-------SAENLL 187 (315)
Q Consensus 164 ---------------------~~~~~g-----------------~~~~----------~l-~i~~~~-------~~e~~~ 187 (315)
|.+.++ +|+. .. .+.... ....++
T Consensus 104 ~~~~~~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~fcH~FDLsk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 183 (363)
T PF05625_consen 104 EKKSKIAEESSESDEDMKIAWRYEKLPKFQSSVGSSSYPNFCHQFDLSKRMDPEPLSAEIIFIPPDQPPSSSSSPYRSLL 183 (363)
T ss_dssp --------------------------------------TTSS--EETTSE-SS---TTTEEEE-TTS--------HHHHH
T ss_pred cccccccccCCCCccCCeeEeecccCccccccccCCcccccccccccccccChhhccccceEecCCCCcchhHHHHHHHH
Confidence 000000 0000 11 111111 145667
Q ss_pred HHHHHHHHc------CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHh--ccCcEEEEEeccccc
Q 021239 188 SVVDTLTKS------GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC--QSHTLIIFLNQVRFS 259 (315)
Q Consensus 188 ~~i~~l~~~------~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~--~~~i~VI~inq~~~~ 259 (315)
..+.+.+.. ..+-.|+|-++........-. .+..++.++|..|..+++ ..+++++++--. .
T Consensus 184 ~~i~~~i~~~~~~~~~~v~RI~I~sl~SP~w~~~~~---------~~~~~ll~FL~~LR~LlR~~~s~~v~~iTlP~--~ 252 (363)
T PF05625_consen 184 QQIQQIISKSGFSPPSKVLRIVIPSLGSPLWYPPSA---------SQPSELLRFLHSLRALLRKYSSNAVAMITLPS--H 252 (363)
T ss_dssp HHHHHHHHH----TTTSEEEEEETTTT-TTTS-GGG---------GBHHHHHHHHHHHHHHHHHTTTTEEEEEEEEG--T
T ss_pred HHHHHHHHhhccCCCCceEEEEEcCCCCcccCCccc---------ccHHHHHHHHHHHHHHHhccCCCEEEEEEECH--H
Confidence 777776653 356789999887655321110 123347888999998889 455555555422 1
Q ss_pred cCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 260 AKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 260 ~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
. |. ..+..-.-|.|.+|..|.|+--.
T Consensus 253 L-----~~---~~~~~~~~l~~l~D~vi~Le~F~ 278 (363)
T PF05625_consen 253 L-----YP---RSPSLVRRLEHLADGVIELESFA 278 (363)
T ss_dssp T-----S------HHHHHHHHHHSSEEEEEEE--
T ss_pred H-----hc---cChHHHHHHHHhCCEEEEeecCC
Confidence 1 21 13445677889999999988643
No 402
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.71 E-value=0.00011 Score=69.46 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=66.9
Q ss_pred ccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcC--CeEEEEecCCCCCh--HHHHHcCCCCCCeEE
Q 021239 102 STGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDVENALDP--SLAEAMGIDAENLLI 177 (315)
Q Consensus 102 ~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g--~~v~~i~~E~~~~~--~~~~~~g~~~~~l~i 177 (315)
.+|...+|.++. +-+|.-.+|.|++|+||||++..++.....+. -.|+|.-..+.... +..+.+- ..+..
T Consensus 118 ~~~~RvID~l~P---iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~---~~Vva 191 (380)
T PRK12608 118 DLSMRVVDLVAP---IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVK---GEVYA 191 (380)
T ss_pred chhHhhhhheee---cCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHh---hhEEe
Confidence 577788998886 34788899999999999999999988887642 23455454444433 2222221 01222
Q ss_pred eCC-CC-------HHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 178 AQP-DS-------AENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 178 ~~~-~~-------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
... .+ .+...+.++++.+++.--+|++|+++.+.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 111 11 12334556666677777899999999876
No 403
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.71 E-value=0.00024 Score=71.56 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++.......+.+.
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 679999999999999999999999887766555553
No 404
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.71 E-value=0.00017 Score=74.29 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+.+.|.|++|+|||||+..++.......|.+.
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 3689999999999999999999888877766555554
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00026 Score=72.65 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=59.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH-hcC-CeEEEEecCCCCC----h--HHHHHcCCCCCCeEEeCCCCHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ-KLG-GYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLLS 188 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g-~~v~~i~~E~~~~----~--~~~~~~g~~~~~l~i~~~~~~e~~~~ 188 (315)
+++|.++.|.||+|+||||++..++..+. ..| .+|.+++.+.... + .+++.+|++.. ...+.+++..
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~-----~~~~~~~l~~ 256 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH-----AVKDAADLRF 256 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-----ccCCHHHHHH
Confidence 34688999999999999999999998875 445 4888888775431 1 24455565432 2224566666
Q ss_pred HHHHHHHcCCccEEeehhHhhh
Q 021239 189 VVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 189 ~i~~l~~~~~~~lVVIDsl~~l 210 (315)
.+..+ .+.++|+||.-...
T Consensus 257 al~~~---~~~D~VLIDTAGRs 275 (767)
T PRK14723 257 ALAAL---GDKHLVLIDTVGMS 275 (767)
T ss_pred HHHHh---cCCCEEEEeCCCCC
Confidence 66654 35699999977644
No 406
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.70 E-value=0.00028 Score=64.59 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=30.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+++|+++.|.|++|+|||||+..++.... ..+.+ +++..
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~ 65 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGV 65 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCE
Confidence 67999999999999999999998887765 44444 45543
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.70 E-value=0.00026 Score=59.40 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCC--CCC----eEEeCCCC-HHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGID--AEN----LLIAQPDS-AENLLSVVD 191 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~--~~~----l~i~~~~~-~e~~~~~i~ 191 (315)
.+.+++|.||+|+|||+++..++........+...-+ +. +.|.. ..+ +...+... ..+.....+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~--------~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~ 90 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV--------KAGCIVAAVSAELIFTRLQLSGGEKELSALAL 90 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc--------cCCCcceeeEEEEehheeeccccHHHHHHHHH
Confidence 3479999999999999999998776664432222200 00 01100 001 00111122 223444444
Q ss_pred HHHHc--CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 192 TLTKS--GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 192 ~l~~~--~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
.+... .+++++++|.+..-... .....+.+.+.++ ..+ ++++|+++|...-.
T Consensus 91 ~L~~~~~~~~~llllDEp~~gld~-------------~~~~~l~~~l~~~---~~~-~~~vii~TH~~~~~ 144 (162)
T cd03227 91 ILALASLKPRPLYILDEIDRGLDP-------------RDGQALAEAILEH---LVK-GAQVIVITHLPELA 144 (162)
T ss_pred HHHhcCCCCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHH---Hhc-CCEEEEEcCCHHHH
Confidence 44433 27899999987755421 1122244444433 355 89999999976543
No 408
>CHL00176 ftsH cell division protein; Validated
Probab=97.70 E-value=0.00015 Score=73.72 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=61.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCc
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~ 199 (315)
..-++|+||||+|||+++..+|..+ +.+.++++...-.. ...|. ....+...+.. .....+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~----~~~g~-----------~~~~vr~lF~~-A~~~~P 276 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVE----MFVGV-----------GAARVRDLFKK-AKENSP 276 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHH----Hhhhh-----------hHHHHHHHHHH-HhcCCC
Confidence 3459999999999999999997765 45555555322100 00010 11222222222 234678
Q ss_pred cEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccc
Q 021239 200 DVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRF 258 (315)
Q Consensus 200 ~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~ 258 (315)
.+|+||.+..+..... .+..+ ... .....+.+.|..+..+....++.||.+++...
T Consensus 277 ~ILfIDEID~l~~~r~-~~~~~-~~~-e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~ 332 (638)
T CHL00176 277 CIVFIDEIDAVGRQRG-AGIGG-GND-EREQTLNQLLTEMDGFKGNKGVIVIAATNRVD 332 (638)
T ss_pred cEEEEecchhhhhccc-CCCCC-CcH-HHHHHHHHHHhhhccccCCCCeeEEEecCchH
Confidence 9999999998873211 11111 111 22223444444443333445677776665433
No 409
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.69 E-value=0.00022 Score=71.67 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+.+.|.|++|+|||||+..++.......|.+.+
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 5799999999999999999999888777666555543
No 410
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=0.00019 Score=65.30 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+++|+++.|.|++|+|||||+..++...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 36799999999999999999998888754
No 411
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00014 Score=65.00 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
=|+.+..-+++|||||+|||.++..+|+..- +.|+-.-. + ++.-.-..+...++.-.-.+.
T Consensus 200 lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~-----aTFLKLAg--P------------QLVQMfIGdGAkLVRDAFaLA 260 (424)
T KOG0652|consen 200 LGIRPPKGVLMYGPPGTGKTLMARACAAQTN-----ATFLKLAG--P------------QLVQMFIGDGAKLVRDAFALA 260 (424)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----chHHHhcc--h------------HHHhhhhcchHHHHHHHHHHh
Confidence 4788888899999999999999988765431 11211100 0 000001112334444444566
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
++..|.+|+||.+.++- ...++++.... . .-+|.+...|.+|-.+.....+-||....-
T Consensus 261 KEkaP~IIFIDElDAIG-tKRfDSek~GD-R-EVQRTMLELLNQLDGFss~~~vKviAATNR 319 (424)
T KOG0652|consen 261 KEKAPTIIFIDELDAIG-TKRFDSEKAGD-R-EVQRTMLELLNQLDGFSSDDRVKVIAATNR 319 (424)
T ss_pred hccCCeEEEEechhhhc-ccccccccccc-H-HHHHHHHHHHHhhcCCCCccceEEEeeccc
Confidence 67789999999999987 45666553221 1 223456677777766655666777765543
No 412
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00017 Score=71.43 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+++...++++||||+|||.+|..++... +.+ |++...+ . +.-......+..+..+....+
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~--fi~v~~~--~------------l~sk~vGesek~ir~~F~~A~ 332 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALES---RSR--FISVKGS--E------------LLSKWVGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCe--EEEeeCH--H------------HhccccchHHHHHHHHHHHHH
Confidence 78888899999999999999999887643 223 3333222 0 010111233444444445555
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+|+||.+..+.+... .+.. ....|.+.+.+..+...-...++.||..+..-..+
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~-~~~~-----~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRG-PSED-----GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cCCCcEEEEEchhhhhccCC-CCCc-----hHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 67899999999999985321 1111 11134455555555433345566666665554444
No 413
>PRK09087 hypothetical protein; Validated
Probab=97.68 E-value=0.00014 Score=64.69 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=43.3
Q ss_pred HHHHHhhCcccccccccccCCC-CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 75 SQLANDFGKESMLSLKRFFGSR-RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~-~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
.|+..++......++.+|+.+. +...+. .++... +. .+..+.|+|++|+|||+|+..++... .+.|
T Consensus 6 ~Ql~l~~~~~~~~~~~~Fi~~~~N~~a~~----~l~~~~---~~-~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~ 72 (226)
T PRK09087 6 EQLPLNFSHDPAYGRDDLLVTESNRAAVS----LVDHWP---NW-PSPVVVLAGPVGSGKTHLASIWREKS-----DALL 72 (226)
T ss_pred cceeeCCCCCCCCChhceeecCchHHHHH----HHHhcc---cC-CCCeEEEECCCCCCHHHHHHHHHHhc-----CCEE
Confidence 4666677666667777766422 222222 344432 32 35679999999999999998766543 4557
Q ss_pred Eec
Q 021239 154 LDV 156 (315)
Q Consensus 154 i~~ 156 (315)
++.
T Consensus 73 i~~ 75 (226)
T PRK09087 73 IHP 75 (226)
T ss_pred ecH
Confidence 774
No 414
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.68 E-value=0.0002 Score=72.41 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++.......+.+.
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 679999999999999999999888776655555543
No 415
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.00012 Score=72.71 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 322 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 6789999999999999999999888665444455543
No 416
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=7.6e-05 Score=63.30 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=36.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
++|.++.|.|.||+||||++..++......|..+.+++.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 5799999999999999999999999888778889999875
No 417
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.66 E-value=0.0002 Score=71.87 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=30.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.||+|+|||||+.-++.......|.+.
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 679999999999999999999888776665555554
No 418
>PRK13695 putative NTPase; Provisional
Probab=97.66 E-value=0.00015 Score=61.51 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=26.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEE-EEe
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCA-YLD 155 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~-~i~ 155 (315)
.+.|.|++|+|||||+..++..+...|.++. |+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4789999999999999998877665565543 443
No 419
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.66 E-value=0.00088 Score=56.83 Aligned_cols=91 Identities=14% Similarity=0.220 Sum_probs=60.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC----ChHHHHHcCCCCC----CeEEeCCCC------HHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----DPSLAEAMGIDAE----NLLIAQPDS------AENLL 187 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~----~~~~~~~~g~~~~----~l~i~~~~~------~e~~~ 187 (315)
++.|++++|.||||.|+.++..++..|.+|+++-|=... +....+.+++... .+.+...+. ..+.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 677788899999999999999999999999877553322 1223333332211 111212221 22445
Q ss_pred HHHHHHHHcCCccEEeehhHhhhcc
Q 021239 188 SVVDTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 188 ~~i~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
+.+++.+....+++||+|.+.....
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~ 111 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALK 111 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHH
Confidence 5566777788999999999997773
No 420
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.66 E-value=0.00015 Score=71.87 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~ 311 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 6789999999999999999998887655444444433
No 421
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.66 E-value=0.00017 Score=68.23 Aligned_cols=92 Identities=25% Similarity=0.321 Sum_probs=55.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH--HhcCCeEEEEecCCCCChHHHHHcCCCC-CCeEEeCCCCHHHHHHHHH-HHHHc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENALDPSLAEAMGIDA-ENLLIAQPDSAENLLSVVD-TLTKS 196 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~--~~~g~~v~~i~~E~~~~~~~~~~~g~~~-~~l~i~~~~~~e~~~~~i~-~l~~~ 196 (315)
.+++|.|.||+|||.+++.++..+ ...+..++|+...........+.+.-.. ....-........+...+. .....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEK 81 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccC
Confidence 478999999999999999999999 6778889998877666554433332221 0000000011111111111 01123
Q ss_pred CCccEEeehhHhhhcc
Q 021239 197 GSIDVIVVDSVAALIP 212 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~ 212 (315)
...++||||.-+.+..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 4678888888887764
No 422
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.00056 Score=63.29 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=77.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-------HHHHHcCCCCCCeEEeCCCCHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-------SLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~ 191 (315)
+..++++.|-+|+||||..-.+|..+..+|.+|+....+ ++.. .++++.|++.=.-. .-.+++.-.++.+.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~ 215 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQ 215 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHH
Confidence 467999999999999999999999999999888766654 3332 46777776532111 23455555666666
Q ss_pred HHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCc
Q 021239 192 TLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHT 248 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i 248 (315)
... ..+.++|+||.-..+... . -+...|+++.+.++....
T Consensus 216 ~Ak-ar~~DvvliDTAGRLhnk---------------~-nLM~EL~KI~rV~~k~~~ 255 (340)
T COG0552 216 AAK-ARGIDVVLIDTAGRLHNK---------------K-NLMDELKKIVRVIKKDDP 255 (340)
T ss_pred HHH-HcCCCEEEEeCcccccCc---------------h-hHHHHHHHHHHHhccccC
Confidence 553 468999999987766521 1 155667777777766543
No 423
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00031 Score=63.61 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+++|+++.|.|++|+|||||+..++.....
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 679999999999999999999988876543
No 424
>COG4544 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00029 Score=61.47 Aligned_cols=136 Identities=23% Similarity=0.330 Sum_probs=98.4
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCCCChHHHHHcCCCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALDPSLAEAMGIDAEN 174 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~~~~~~~~~~g~~~~~ 174 (315)
....++.|++.+|..|.+||+.-|.+.++.|.-..--+=++..++.... .++++|+|+.+-+..-..-...+|+++++
T Consensus 31 ~~~~LpfGvp~~Da~lpGGglalg~ihe~~ggg~ga~~GaAaAl~~~g~~~r~~gpVvWi~tr~dlf~paL~~~Gl~~~R 110 (260)
T COG4544 31 RAGILPFGVPPIDAALPGGGLALGEIHELEGGGAGAADGAAAALAVLGLAARRGGPVVWILTREDLFPPALAAFGLDPER 110 (260)
T ss_pred cccccccCCCchhhhcCCcchhhhhhhhccCCCccchhhHHHHHHHHhhhcccCCCEEEEEecccccchhHhhcCCChhh
Confidence 4567899999999999867788888888887654444555555555443 45789999998544333337889999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 021239 175 LLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLN 254 (315)
Q Consensus 175 l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~in 254 (315)
+++..+.+.++.++..++.+.-..+..||.. +..+- + ..-|+|.--+...|.++|++-
T Consensus 111 lifVea~~e~dvL~~~EeaLs~~g~aaVV~E-i~~L~----l-----------------tasRRLqlaae~~G~~~l~lR 168 (260)
T COG4544 111 LIFVEARKEEDVLWNAEEALSFGGLAAVVAE-IRRLD----L-----------------TASRRLQLAAEAAGVPGLVLR 168 (260)
T ss_pred EEEEeCCcHHHHHHHHHHhhcccchhheeee-eeecc----c-----------------chhHHHHHHHHhcCCcEEEEe
Confidence 9999999999999999988876666655543 22111 0 123455555577899999998
No 425
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.66 E-value=0.00018 Score=74.34 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=30.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.||+|+||||++..++......++.+.
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 679999999999999999999988887766655553
No 426
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.66 E-value=0.00015 Score=72.72 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+.+.|.|++|+|||||+..++.......+.+.
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 679999999999999999999888766654444443
No 427
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.65 E-value=0.00085 Score=57.76 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC-C---hHHHHHcC-CCCC----CeEEeCCCC------H
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D---PSLAEAMG-IDAE----NLLIAQPDS------A 183 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~-~---~~~~~~~g-~~~~----~l~i~~~~~------~ 183 (315)
....+.|++++|.||||.|+.++..++..|.+|+++-|=-.. . ....+.++ +... ...+..... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 445899999999999999999999999999999998875433 1 23344332 1111 111111111 1
Q ss_pred HHHHHHHHHHHHcCCccEEeehhHhhhcc
Q 021239 184 ENLLSVVDTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 184 e~~~~~i~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
.+.++.+++.+.+..+++||+|.+.....
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~ 129 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALK 129 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHH
Confidence 23455566777788999999999998773
No 428
>PRK08233 hypothetical protein; Provisional
Probab=97.65 E-value=0.00012 Score=62.04 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=48.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC-h-HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-P-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~-~-~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
+.++.|.|+||+||||+|..++.... +..+++++...... . .....+. +..+. .....+.+.+.+..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~~~~~ 76 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWID-KGANY---SEWVLTPLIKDIQELIAKS 76 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhh-ccCCh---hhhhhHHHHHHHHHHHcCC
Confidence 57899999999999999999987653 23555555432111 1 1111111 01111 2334456666676666656
Q ss_pred CccEEeehhH
Q 021239 198 SIDVIVVDSV 207 (315)
Q Consensus 198 ~~~lVVIDsl 207 (315)
+.++|++|..
T Consensus 77 ~~~~vivd~~ 86 (182)
T PRK08233 77 NVDYIIVDYP 86 (182)
T ss_pred CceEEEEeee
Confidence 6688888964
No 429
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.65 E-value=0.00025 Score=59.74 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=50.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHHcCCCCCCeEEeCCCCHHHHH-HHHHHHHHcCCc
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLL-SVVDTLTKSGSI 199 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~~g~~~~~l~i~~~~~~e~~~-~~i~~l~~~~~~ 199 (315)
+....+.+|+||||++.++|..++..|.+|+.+|++..... .+. + ........+ ..+..+ ...+.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~--~----------~~~~~~~~l~~~~~~~-~~~~y 68 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM--W----------RGPMKMGAIKQFLTDV-DWGEL 68 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH--H----------hCcchHHHHHHHHHHh-hcCCC
Confidence 45667789999999999999999999999999999876542 111 0 001112222 222222 23578
Q ss_pred cEEeehhHhhh
Q 021239 200 DVIVVDSVAAL 210 (315)
Q Consensus 200 ~lVVIDsl~~l 210 (315)
++||||.-..+
T Consensus 69 D~VIiD~pp~~ 79 (169)
T cd02037 69 DYLVIDMPPGT 79 (169)
T ss_pred CEEEEeCCCCC
Confidence 99999986554
No 430
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00048 Score=63.27 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC-------hHHHHHcCCCCCCeEEeCC---------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-------PSLAEAMGIDAENLLIAQP--------- 180 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~-------~~~~~~~g~~~~~l~i~~~--------- 180 (315)
++.|++.+|.|-+|||||||...+-.-.-...+++ +++.++-.. ..|.+.+++.++++-+.+.
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 67899999999999999999987654443344454 455443221 1244455555443322211
Q ss_pred -------CCHH---HHHHH---------------------------HHHHHHcCCccEEeehhH-hhhccccccCCCccC
Q 021239 181 -------DSAE---NLLSV---------------------------VDTLTKSGSIDVIVVDSV-AALIPKCEIGVPING 222 (315)
Q Consensus 181 -------~~~e---~~~~~---------------------------i~~l~~~~~~~lVVIDsl-~~l~~~~~~~~~~~~ 222 (315)
+..| ...++ .+.+ ..+++++..|.- +++-|
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAl--a~~~~IlLMDEaFSALDP---------- 197 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL--ANDPDILLMDEAFSALDP---------- 197 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHH--ccCCCEEEecCchhhcCh----------
Confidence 1111 01111 1111 246788888843 33332
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 223 ~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
....++...|.+|. ++++-|||+++|--+.
T Consensus 198 ----LIR~~mQdeLl~Lq---~~l~KTIvFitHDLdE 227 (386)
T COG4175 198 ----LIRTEMQDELLELQ---AKLKKTIVFITHDLDE 227 (386)
T ss_pred ----HHHHHHHHHHHHHH---HHhCCeEEEEecCHHH
Confidence 33445667777777 7889999999997544
No 431
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.64 E-value=0.00022 Score=71.99 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
=+++|+.+.|.||+|+|||||+..++.......+.+.
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 3679999999999999999999888877765555543
No 432
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.64 E-value=0.00045 Score=65.43 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=54.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhc--C----CeEEEEecCCCCCh-----HHHHHc---CCCCCCeEEeCCCCHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKL--G----GYCAYLDVENALDP-----SLAEAM---GIDAENLLIAQPDSAENL 186 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~--g----~~v~~i~~E~~~~~-----~~~~~~---g~~~~~l~i~~~~~~e~~ 186 (315)
..++|+||||+|||+++..++...... + -.++|+++...... ..++.+ |..... ...+..++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~~~~ 116 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPT----TGLSTSEV 116 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCC----CCCCHHHH
Confidence 468999999999999999988776532 1 36788887554332 233444 322110 11234455
Q ss_pred HHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 187 LSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 187 ~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
+..+...+. ..++.+||||.+..+.
T Consensus 117 ~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 117 FRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred HHHHHHHHHhcCCeEEEEECchhhhc
Confidence 544444333 3456789999999886
No 433
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=0.00026 Score=64.18 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+++|+++.|.|++|+|||||+..++....
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 367999999999999999999988876653
No 434
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=97.64 E-value=0.0004 Score=68.39 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=73.6
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|-++. +-+|.-..|.|++|+|||+||+.++.+....+-.|+|...-+.... +..+.+ +
T Consensus 140 ~~~~~~l~TGi~~ID~l~p---igrGQr~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~~~~~ 216 (502)
T PRK09281 140 KSVHEPLQTGIKAIDAMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEHG 216 (502)
T ss_pred CCccceeecCCeeeecccc---cccCcEEEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcC
Confidence 4567789999999999987 7799999999999999999988877766555555678776554433 222222 2
Q ss_pred CCCCCeEEe-CCC--CHHHHH------HHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIA-QPD--SAENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~-~~~--~~e~~~------~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.-..-+.+. ..+ ..+... ...+.+..++.--++++|+++.+.
T Consensus 217 ~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A 267 (502)
T PRK09281 217 AMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267 (502)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 111122222 222 222222 223344445566799999998875
No 435
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.64 E-value=0.00032 Score=69.68 Aligned_cols=46 Identities=33% Similarity=0.428 Sum_probs=36.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--------CCeEEEEecCCCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL--------GGYCAYLDVENALD 161 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--------g~~v~~i~~E~~~~ 161 (315)
-+.+|+-+.|.|++|+|||||+..++...... +.++.|+.-+....
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcC
Confidence 46799999999999999999999888766432 33677887666554
No 436
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.64 E-value=0.00039 Score=66.56 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=57.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcC--CeEEEEecCCCCCh-----HHHHHcCC-CCCCeEEeCCCCHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDVENALDP-----SLAEAMGI-DAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g--~~v~~i~~E~~~~~-----~~~~~~g~-~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
..++|+|+||+|||+++..++..+...+ -.++|++....... ...+.++. ... ....+.++++..+.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~~~ 131 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPP----SSGLSFDELFDKIAE 131 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCC----CCCCCHHHHHHHHHH
Confidence 4578999999999999999998876543 57888887554332 22333322 110 011245666666665
Q ss_pred HHH-cCCccEEeehhHhhhc
Q 021239 193 LTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 193 l~~-~~~~~lVVIDsl~~l~ 211 (315)
.+. ...+.+|+||.+..+.
T Consensus 132 ~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 132 YLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHhcCCEEEEEECCHhHhh
Confidence 554 3456799999999886
No 437
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00022 Score=66.97 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=65.1
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeC
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQ 179 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~ 179 (315)
.+|--.|+ .+. |+..|=.-+++.||||+|||.||..+|.++. +.||....+.- .. .-
T Consensus 229 vlPi~mPe---~F~-GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSsstl---tS-----------Kw 285 (491)
T KOG0738|consen 229 VLPIWMPE---FFK-GIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSSTL---TS-----------KW 285 (491)
T ss_pred hhhhhhHH---HHh-hcccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechhhh---hh-----------hh
Confidence 34444444 355 7888888899999999999999999988883 56666322110 00 01
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccc
Q 021239 180 PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPK 213 (315)
Q Consensus 180 ~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~ 213 (315)
-.+.|.++..+-++.+-+.|..|+||.|..+..+
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~ 319 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQ 319 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhc
Confidence 1245778888888888889999999999999843
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.63 E-value=0.00018 Score=68.62 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=61.7
Q ss_pred CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CC-eEEEEec-CCCCCh-HHHHHcCCCCCCeEEeC
Q 021239 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GG-YCAYLDV-ENALDP-SLAEAMGIDAENLLIAQ 179 (315)
Q Consensus 104 G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~-~v~~i~~-E~~~~~-~~~~~~g~~~~~l~i~~ 179 (315)
|+..+|-.+. +.+|+.+.|.||+|+||||++..++...... .. .+++.-. |...+. ...+.+. ..+....
T Consensus 155 ~~R~id~~~p---ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl---g~Vvast 228 (415)
T TIGR00767 155 STRVLDLFAP---IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK---GEVVAST 228 (415)
T ss_pred ceeeeeeEEE---eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh---ceEEEec
Confidence 4445566665 6799999999999999999998887776544 11 3333333 322332 3333331 1233322
Q ss_pred CC-C-------HHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 180 PD-S-------AENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 180 ~~-~-------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.+ + .+.+.+.++++...+.--+|+||+++.+.
T Consensus 229 ~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 229 FDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 22 1 12334445555566666799999999876
No 439
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.63 E-value=0.00037 Score=70.13 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=40.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC---CCCChHHHHHcCCCCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE---NALDPSLAEAMGIDAEN 174 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E---~~~~~~~~~~~g~~~~~ 174 (315)
-+++|+.+.|.||+|+||||++.-++.-.-...|.+.+ |.. +-....+.+.+++.+++
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHHHhccEEccc
Confidence 47899999999999999999998887777665666655 321 11222455666765553
No 440
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.63 E-value=0.00062 Score=66.24 Aligned_cols=114 Identities=21% Similarity=0.365 Sum_probs=74.1
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHH-cCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEA-MGI 170 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~-~g~ 170 (315)
....+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+..+. ...++|....+.... +..+. .+-
T Consensus 122 ~~~~~~l~TGiraID~l~p---igkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~ 198 (463)
T PRK09280 122 STKTEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKES 198 (463)
T ss_pred CCccceeccCCeeecccCC---cccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhc
Confidence 4567789999999999987 7799999999999999999999999888754 446666665444433 22222 221
Q ss_pred C-CCC-eEE-eCCC--CHHHHH------HHHHHHHH-cCCccEEeehhHhhhc
Q 021239 171 D-AEN-LLI-AQPD--SAENLL------SVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 171 ~-~~~-l~i-~~~~--~~e~~~------~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
. .++ +.+ ...+ +.+.+. .+.+.+.. ++.--++++||++.+.
T Consensus 199 ~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 199 GVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred CCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 1 122 222 2222 222222 23334444 5556689999999876
No 441
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.63 E-value=0.00056 Score=66.35 Aligned_cols=114 Identities=18% Similarity=0.336 Sum_probs=74.1
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHHc-CC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAM-GI 170 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~~-g~ 170 (315)
....+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+.+++.+..+. ...++|....+.... +..+.+ +-
T Consensus 116 ~~i~e~L~TGIr~ID~l~p---igkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~ 192 (449)
T TIGR03305 116 SSKSEVFETGIKAIDVLVP---LERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEA 192 (449)
T ss_pred ccCCcccccCceeeccccc---cccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhc
Confidence 4567899999999999987 7799999999999999999999999997643 456777665444443 222222 21
Q ss_pred C-CCC-eEEe-CCC--CHHHH------HHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 171 D-AEN-LLIA-QPD--SAENL------LSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 171 ~-~~~-l~i~-~~~--~~e~~------~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
. .++ +.+. ..+ ..+.. ....+.+.. ++.--++++||++.+.
T Consensus 193 ~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 193 GVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred cccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 1 122 2222 222 22222 122333433 4555689999999876
No 442
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.63 E-value=0.00026 Score=70.53 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 6799999999999999999998887665444555544
No 443
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.63 E-value=0.00017 Score=65.71 Aligned_cols=123 Identities=19% Similarity=0.084 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC-C---ChHHHHHcCCCCCCeEEeCCC
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-L---DPSLAEAMGIDAENLLIAQPD 181 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~-~---~~~~~~~~g~~~~~l~i~~~~ 181 (315)
..|+.+.. .|- ...+.|.|++|+|||||+..++.......+.+. ++...- . ..+++..++.-+++-.....+
T Consensus 100 ~~l~~l~~-~~~--~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~-~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 100 KLLPYLVR-NNR--VLNTLIISPPQCGKTTLLRDLARILSTGISQLG-LRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHh-CCC--eeEEEEEcCCCCCHHHHHHHHhCccCCCCceEE-ECCEEeecchhHHHHHHHhccccccccccccc
Confidence 34566654 221 157899999999999999998877765444443 332211 1 123444444333322111111
Q ss_pred ---CHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 182 ---SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 182 ---~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
.... ..-+..++...+|+++++|.+... ..+...+..+ . .|.++|++.|..
T Consensus 176 v~~~~~k-~~~~~~~i~~~~P~villDE~~~~-------------------e~~~~l~~~~----~-~G~~vI~ttH~~ 229 (270)
T TIGR02858 176 VLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE-------------------EDVEALLEAL----H-AGVSIIATAHGR 229 (270)
T ss_pred ccccchH-HHHHHHHHHhCCCCEEEEeCCCcH-------------------HHHHHHHHHH----h-CCCEEEEEechh
Confidence 1111 222444555568999999984210 1122222222 3 599999999964
No 444
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=97.62 E-value=4.7e-05 Score=64.39 Aligned_cols=122 Identities=17% Similarity=0.325 Sum_probs=61.6
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC----CCCCeE-EeCCCCHHHHHHHHHHHHHcC
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENLL-IAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~----~~~~l~-i~~~~~~e~~~~~i~~l~~~~ 197 (315)
|+|.|...||||.+|..++ ...+.+++|+.+-...+.++.+++.- -+.... +..+.+..+.+ .. ..
T Consensus 1 ilv~GG~rSGKS~~Ae~la---~~~~~~~~YiAT~~~~D~em~~RI~~H~~~R~~~w~tiE~~~~l~~~~---~~---~~ 71 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLA---LSFGGPVTYIATARPFDEEMRERIARHRQRRPKGWITIEEPRDLAEAL---EE---LS 71 (167)
T ss_dssp EEEEESTTSSHHHHHHHHH---TS--SCEEEEESSHHHHHHHHHHHHHHHHHSSTCEEEEE-SS-GGGTS----T---TS
T ss_pred CEEeCCCCcchHHHHHHHH---HhcCCCcEEEeCCCCCCHHHHHHHHHHHHhCCCCcEEEecchhHHHHH---HH---hc
Confidence 6899999999999999998 33358999999877776544443311 022222 22233222221 11 12
Q ss_pred CccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhcc-CcEEEEEecccccc
Q 021239 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQS-HTLIIFLNQVRFSA 260 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~-~i~VI~inq~~~~~ 260 (315)
..+.|+||+++.+.. ..+...... ...+...+.++...+.+. .-.||++|.+...+
T Consensus 72 ~~~~vLlDclt~wl~-n~l~~~~~~------~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~Gi 128 (167)
T PF02283_consen 72 PGDVVLLDCLTLWLA-NLLFAEEDD------EEDILEEIERLLEALRERNADLVIVSNEVGWGI 128 (167)
T ss_dssp -T-EEEEE-HHHHHH-HHHHHHHTT------HHHHHHHHHHHHHHHHH--SEEEEEEE---SS-
T ss_pred cCCeEEEeCHHHHHH-HHHHhccCc------HHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCC
Confidence 258999999999883 222211100 011233333343334444 55677777775443
No 445
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.62 E-value=0.00036 Score=63.08 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=36.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
++.+.|.+|+||||++.+++..+++.|.++++++++...
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 688999999999999999999999999999999998864
No 446
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.62 E-value=0.00048 Score=54.66 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=54.6
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCC-eE--EeCCC--------CHH--HHHHH
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAEN-LL--IAQPD--------SAE--NLLSV 189 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~-l~--i~~~~--------~~e--~~~~~ 189 (315)
+.+.|.+|+|||+++..++....+++.+++.++.+. ..+.+.++....+ .. ..-+. ..+ .+.+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~---~~~~~~~~~~~~~~~~~i~~g~~~~~~~g~~~~~n~~~~~~ 78 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP---DDLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALLNAL 78 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc---hhhHHHHhhccCCceEEEEecccccCCCCCEehhhHHHHHH
Confidence 679999999999999999999988899999999887 3333444333221 11 11111 011 23333
Q ss_pred HHHHHHcCCccEEeehhHhhhc
Q 021239 190 VDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 190 i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
+..+ ...+.+.+++|....+.
T Consensus 79 l~~~-~~~~~~~vivDt~ag~e 99 (116)
T cd02034 79 LRHL-VLTRDEQVVVDTEAGLE 99 (116)
T ss_pred HHHe-EccCCCEEEEecHHHHH
Confidence 3332 22456799999887765
No 447
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.62 E-value=1.6e-05 Score=68.36 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHH-HcCCCCCCeEEe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAE-AMGIDAENLLIA 178 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~-~~g~~~~~l~i~ 178 (315)
.+.+|+++.+.||+|+||||.-..++.-.....+++++=+.+-+.-+ .||+ .+|+-+++-.++
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 36799999999999999999876655555555556544333333333 2332 245556544333
No 448
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.62 E-value=0.00018 Score=71.30 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+++|+++.|.|++|+|||||+..++....
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999988876543
No 449
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.62 E-value=0.00013 Score=68.30 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 125 IYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 125 i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
|.||+|+|||||+..++.......+.+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~ 28 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM 28 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEE
Confidence 5799999999999888876554444443
No 450
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=9.1e-05 Score=66.83 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE-----EEEecCCCCCh-HHHHHcCCCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC-----AYLDVENALDP-SLAEAMGIDAE 173 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v-----~~i~~E~~~~~-~~~~~~g~~~~ 173 (315)
|.-.++.|+|++|+|||++...++.-.....+.+ +++|.+....- .-.+++|+.++
T Consensus 22 p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 3337999999999999999977766554433332 24666555432 34566777655
No 451
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00057 Score=61.24 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+|+++.|.|++|+|||||+..++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5689999999999999999999888754
No 452
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.62 E-value=0.00036 Score=61.41 Aligned_cols=104 Identities=20% Similarity=0.366 Sum_probs=67.6
Q ss_pred cCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc-CC-CCCC--eE
Q 021239 103 TGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM-GI-DAEN--LL 176 (315)
Q Consensus 103 TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~-g~-~~~~--l~ 176 (315)
||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+.. ...++|+...+.... +..+.+ +- ..++ +.
T Consensus 1 TGir~ID~l~P---ig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv 75 (215)
T PF00006_consen 1 TGIRAIDLLFP---IGRGQRIGIFGGAGVGKTVLLQEIANNQD--ADVVVYALIGERGREVTEFIEELKGEGALERTVVV 75 (215)
T ss_dssp -SHHHHHHHSC---EETTSEEEEEESTTSSHHHHHHHHHHHCT--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred CCCceeccccc---cccCCEEEEEcCcccccchhhHHHHhccc--ccceeeeeccccchhHHHHHHHHhhcccccccccc
Confidence 79999999986 77999999999999999999999998885 334577776555443 222222 11 1222 23
Q ss_pred EeCCCCH--HH------HHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 177 IAQPDSA--EN------LLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 177 i~~~~~~--e~------~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
....+.. ++ -....+.+..+++--++++|++..+.
T Consensus 76 ~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 76 AATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWA 118 (215)
T ss_dssp EEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHH
T ss_pred cccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHH
Confidence 3333322 21 22334555566667799999998876
No 453
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9.1e-05 Score=75.43 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+.+|+++.|.|++|+|||||+..++.......+.+.
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~ 74 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEE
Confidence 3679999999999999999999998876544444443
No 454
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00014 Score=66.96 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+.+|++..|.|++|||||+++..++...-
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 467999999999999999999999987664
No 455
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.60 E-value=0.00021 Score=69.25 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=68.9
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHHc-CC-CC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAM-GI-DA 172 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~~-g~-~~ 172 (315)
...+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+.+++...... ..++.+..|...+- +..+.+ +- ..
T Consensus 142 ~i~e~l~TGi~~ID~l~~---i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d-~~vi~~iGer~~ev~ef~~~~~~~~~l 217 (441)
T PRK09099 142 MVEAPLPTGVRIVDGLMT---LGEGQRMGIFAPAGVGKSTLMGMFARGTQCD-VNVIALIGERGREVREFIELILGEDGM 217 (441)
T ss_pred CcccccCCCceeccceee---ecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-eEEEEEEccChHHHHHHHHHHhhcCCc
Confidence 456789999999999975 6799999999999999999998887655432 23333333433332 111221 11 11
Q ss_pred CC-eEE-eCCCC--HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 173 EN-LLI-AQPDS--AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 173 ~~-l~i-~~~~~--~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.+ +.+ ...+. .+.. ....+.+..++.--++++||++.+.
T Consensus 218 ~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A 266 (441)
T PRK09099 218 ARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFA 266 (441)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 22 222 22221 2221 2233445556667799999999876
No 456
>PTZ00185 ATPase alpha subunit; Provisional
Probab=97.60 E-value=0.00041 Score=67.89 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=72.8
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH--------hcCCeEEEEecCCCCCh--HH
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ--------KLGGYCAYLDVENALDP--SL 164 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~--------~~g~~v~~i~~E~~~~~--~~ 164 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++|+..+.+.. .....|+|...-+.... ..
T Consensus 167 ~~v~epL~TGIkaID~LiP---IGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei 243 (574)
T PTZ00185 167 SPVNYNLLTGFKAVDTMIP---IGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARI 243 (574)
T ss_pred CCCCCcCcCCceeeecccc---ccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHH
Confidence 4567889999999999987 67999999999999999999877655554 13457888776554443 22
Q ss_pred ---HHHcC-CCCCCeEEeCCC--CHHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 165 ---AEAMG-IDAENLLIAQPD--SAENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 165 ---~~~~g-~~~~~l~i~~~~--~~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.+..| ++-.-+.....+ ...++ ....+.+..++.--++++|+++.+.
T Consensus 244 ~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A 302 (574)
T PTZ00185 244 HRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQA 302 (574)
T ss_pred HHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHH
Confidence 22233 221112222222 22222 2223344455666799999998775
No 457
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.60 E-value=0.00021 Score=80.72 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
++++|+++.|.|++|+||||++..++.......|.+.+
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i 1998 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATV 1998 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 68899999999999999999999888776655555543
No 458
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00037 Score=64.09 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=25.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+|+++.|.|++|+|||||+..++...
T Consensus 62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 6799999999999999999998887664
No 459
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00043 Score=68.41 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI 81 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE
Confidence 467999999999999999999998887654444444
No 460
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.60 E-value=0.00037 Score=77.20 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+.+.|.||+|+|||||+..++.......+.+.+
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 47899999999999999999998888777666666544
No 461
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=9.4e-05 Score=67.06 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH-HHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS-LAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~-~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
|+.+..-+++||+||+|||.||...|..... .|+-. ...+ ..+-+ .+...++..+-+..
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANqTSA-----TFlRv---vGseLiQkyl------------GdGpklvRqlF~vA 274 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQTSA-----TFLRV---VGSELIQKYL------------GDGPKLVRELFRVA 274 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcccch-----hhhhh---hhHHHHHHHh------------ccchHHHHHHHHHH
Confidence 6888888999999999999999776533221 11110 0011 11111 12344555555566
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
+.+.|.+|+||.+.++- ...++...|... .-+|.+...|.+|-.+=.+.++-||+.+.-...
T Consensus 275 ~e~apSIvFiDEIdAiG-tKRyds~Sgger--EiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 275 EEHAPSIVFIDEIDAIG-TKRYDSNSGGER--EIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HhcCCceEEeehhhhhc-cccccCCCccHH--HHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 67899999999999987 456655443321 223345555555544444556777654433333
No 462
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.59 E-value=0.00033 Score=69.28 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++..... ..+.+.|
T Consensus 283 i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~ 320 (490)
T PRK10938 283 VNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL 320 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEE
Confidence 679999999999999999999988874322 2455544
No 463
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00018 Score=71.34 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~ 153 (315)
-+++|+++.|.|++|+|||||+..++.... ...+.+.|
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 367999999999999999999998886654 23555544
No 464
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.58 E-value=0.00034 Score=71.19 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+=+++|+++.|.||+|+|||||+..++....
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~ 76 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSP 76 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999988876543
No 465
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.00054 Score=60.34 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCCcE-EEEEecCCCChhHHHHHHHHHHHh-----cCCeEEEEecCCCCChHHHHHc-CCCC----CCeEEeCC-CCHHH
Q 021239 118 PKGRI-VEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENALDPSLAEAM-GIDA----ENLLIAQP-DSAEN 185 (315)
Q Consensus 118 ~~G~i-~~i~G~~GsGKTtlal~la~~~~~-----~g~~v~~i~~E~~~~~~~~~~~-g~~~----~~l~i~~~-~~~e~ 185 (315)
+.|.+ +++.|||++||||++..+|....- .+.+|..+|.-.... ... |++. .++.+.++ ...+-
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa----g~~~gvpq~~~g~R~dVld~cpk~~g 209 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA----GCLNGVPQHGRGRRMDVLDPCPKAEG 209 (308)
T ss_pred hcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh----ccccCCchhhhhhhhhhcccchHHHH
Confidence 35666 999999999999999999988763 357888888533221 100 1110 12223332 22333
Q ss_pred HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 186 LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 186 ~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
+... +++..|.++|+|.+..... + ..++. +.+.|+-+|.+.|-.
T Consensus 210 mmma----Irsm~PEViIvDEIGt~~d----------------~----~A~~t----a~~~GVkli~TaHG~ 253 (308)
T COG3854 210 MMMA----IRSMSPEVIIVDEIGTEED----------------A----LAILT----ALHAGVKLITTAHGN 253 (308)
T ss_pred HHHH----HHhcCCcEEEEeccccHHH----------------H----HHHHH----HHhcCcEEEEeeccc
Confidence 4433 4456899999999885541 1 11111 246799999998864
No 466
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.0014 Score=58.27 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---hHHHHHcCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGID 171 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~~~~~~~g~~ 171 (315)
=+++|+-..|.|++|+|||||+.-++...-+..+.+..+.-..... .++.+.+|+.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~v 111 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCcc
Confidence 4679999999999999999999888777665555555544322211 3556666654
No 467
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.58 E-value=0.00063 Score=66.34 Aligned_cols=114 Identities=17% Similarity=0.312 Sum_probs=73.1
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHH-cCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEA-MGI 170 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~-~g~ 170 (315)
....+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+..++ ...++|....+.... +..+. .+-
T Consensus 121 ~~~~e~l~TGir~ID~l~p---igkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~ 197 (461)
T PRK12597 121 DTSTEILETGIKVIDLLCP---IAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKES 197 (461)
T ss_pred CCcCcceecCCeeecccCc---cccCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhc
Confidence 4567889999999999987 7799999999999999999999999888753 445666655444333 12222 221
Q ss_pred C-CCC-eEEeCC-C--CHHHH------HHHHHHHHHc-CCccEEeehhHhhhc
Q 021239 171 D-AEN-LLIAQP-D--SAENL------LSVVDTLTKS-GSIDVIVVDSVAALI 211 (315)
Q Consensus 171 ~-~~~-l~i~~~-~--~~e~~------~~~i~~l~~~-~~~~lVVIDsl~~l~ 211 (315)
. .++ +.+... + ..+.. ..+.+.+..+ +.--++++||++.+.
T Consensus 198 ~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 198 GVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred CCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 1 122 222222 2 12222 2233444444 556689999998776
No 468
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.58 E-value=0.0008 Score=61.19 Aligned_cols=114 Identities=13% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH----hcCCeEEEEecCCCCCh--HHHHHc
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ----KLGGYCAYLDVENALDP--SLAEAM 168 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~----~~g~~v~~i~~E~~~~~--~~~~~~ 168 (315)
....+.+.||+..+|-++. +-+|.-+.|.|.+|+|||+|+..++.+.. .....|+|...-+.... +..+.+
T Consensus 47 ~~i~e~l~TGIkaID~l~p---ig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~ 123 (276)
T cd01135 47 IYPEEMIQTGISAIDGMNT---LVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDF 123 (276)
T ss_pred CCcccccccCcEeeecccc---cccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHh
Confidence 3567889999999999987 77899999999999999999998877654 11356777776554433 222222
Q ss_pred -CCC-CCC-eEE-eCCC--CHHHHH------HHHHHHHHc-CCccEEeehhHhhhc
Q 021239 169 -GID-AEN-LLI-AQPD--SAENLL------SVVDTLTKS-GSIDVIVVDSVAALI 211 (315)
Q Consensus 169 -g~~-~~~-l~i-~~~~--~~e~~~------~~i~~l~~~-~~~~lVVIDsl~~l~ 211 (315)
+-. .++ +.+ ...+ ..+.+. .+.+.+..+ +.--++++|+++.+.
T Consensus 124 ~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 124 EETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred hhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 111 122 222 2222 222222 223334344 456689999998776
No 469
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.58 E-value=0.00027 Score=70.60 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.|++|+|||||+..++... ...+.+.
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~ 343 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIW 343 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEE
Confidence 36799999999999999999999888654 3444443
No 470
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00044 Score=62.08 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
-+++|+++.|.|++|+|||||+..++....
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 367999999999999999999998887653
No 471
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.57 E-value=0.00079 Score=65.39 Aligned_cols=114 Identities=21% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh--HHHHHc-CC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAM-GI 170 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~--~~~~~~-g~ 170 (315)
....+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+..+. ...++|....+.... +..+.+ +-
T Consensus 121 ~~~~e~l~TGiraID~l~p---ig~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~ 197 (461)
T TIGR01039 121 STKVEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKES 197 (461)
T ss_pred CCcccccccCceeecccCC---cccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhc
Confidence 3457789999999999987 7799999999999999999999999887654 445666655444332 222222 11
Q ss_pred C-CCC-eEE-eCCC--CHHHHH------HHHHHHHH-cCCccEEeehhHhhhc
Q 021239 171 D-AEN-LLI-AQPD--SAENLL------SVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 171 ~-~~~-l~i-~~~~--~~e~~~------~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
. .++ +.+ ...+ ..+.+. ...+.+.. ++.--++++||++.+.
T Consensus 198 ~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 198 GVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred CCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 1 112 222 2222 222222 22233333 3455689999999876
No 472
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.57 E-value=0.00022 Score=70.95 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.|++|+|||||+..++.......+.+
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i 320 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI 320 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence 367999999999999999999988876544334444
No 473
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.57 E-value=0.00033 Score=66.54 Aligned_cols=82 Identities=23% Similarity=0.335 Sum_probs=62.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCCC----Ch--HHHHHcCCCCCCeEEeCCCCHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENAL----DP--SLAEAMGIDAENLLIAQPDSAENLLSVV 190 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~~----~~--~~~~~~g~~~~~l~i~~~~~~e~~~~~i 190 (315)
++.++.|.||.|+||||..-.+|+.+. ....+|.+|+++.-. ++ .+++-+|++. .-..+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~-----~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL-----EVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-----EEecCHHHHHHHH
Confidence 489999999999999999999999888 556789999987543 22 3566666653 3445677777777
Q ss_pred HHHHHcCCccEEeehhHh
Q 021239 191 DTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~ 208 (315)
..+ ..+++|.||..+
T Consensus 277 ~~l---~~~d~ILVDTaG 291 (407)
T COG1419 277 EAL---RDCDVILVDTAG 291 (407)
T ss_pred HHh---hcCCEEEEeCCC
Confidence 766 356999999776
No 474
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.57 E-value=0.00039 Score=62.26 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 46799999999999999999999888763
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.57 E-value=0.00025 Score=60.60 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=34.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
++.|.|+|||||||||..++......|.++..++.+.-..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 4789999999999999999988877777888888776543
No 476
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.56 E-value=0.001 Score=64.66 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=66.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHH-HHcCCC-CC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLA-EAMGID-AE 173 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~-~~~g~~-~~ 173 (315)
..+.+.||+..+|.++. +.+|+.+.|.|++|+|||||+..++..... ...++.+..|...+- +.. +.++.. ..
T Consensus 138 i~~~l~tg~~vid~l~~---i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~ 213 (438)
T PRK07721 138 IREPMEVGVRAIDSLLT---VGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLK 213 (438)
T ss_pred cccccccchhhhheeee---ecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhc
Confidence 45578999999999975 889999999999999999998766654432 333444444443322 111 112211 11
Q ss_pred -CeE-EeCCC--CHHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 174 -NLL-IAQPD--SAENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 174 -~l~-i~~~~--~~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.+. +...+ ..+.+ ..+.+.+..++.--++++||++.+.
T Consensus 214 r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A 261 (438)
T PRK07721 214 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVA 261 (438)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHH
Confidence 222 22222 22222 2233444455666789999999876
No 477
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.55 E-value=0.0002 Score=61.04 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=57.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---HHHHHcCCCCCCeE--EeCCCCHHHHHHHHHHHHHc
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---SLAEAMGIDAENLL--IAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---~~~~~~g~~~~~l~--i~~~~~~e~~~~~i~~l~~~ 196 (315)
+++|.|..|||||||..+++. ....+.+++++-.|..... .+.+..|.....+. ...+.-..++...+.++...
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 689999999999999999998 6667889999988877543 34444443322111 11222345778888888877
Q ss_pred C--CccEEeehhHh
Q 021239 197 G--SIDVIVVDSVA 208 (315)
Q Consensus 197 ~--~~~lVVIDsl~ 208 (315)
+ +++.|+|.+-.
T Consensus 81 ~~~~~d~IiIE~sG 94 (178)
T PF02492_consen 81 YEERPDRIIIETSG 94 (178)
T ss_dssp CHGC-SEEEEEEEC
T ss_pred cCCCcCEEEECCcc
Confidence 7 89999997655
No 478
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.55 E-value=0.00027 Score=68.24 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHH-cCCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEA-MGID 171 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~-~g~~ 171 (315)
....+.+.||+..+|.++. +.+|+.+.|.|++|+|||||+..++..... ..+++....+.... +..+. ++-.
T Consensus 140 ~~i~e~l~TGi~aID~ll~---i~~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~lIGER~rEv~efi~~~l~~~ 214 (444)
T PRK08972 140 RPITEPLDVGVRAINAMLT---VGKGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVGLVGERGREVKEFIEEILGEE 214 (444)
T ss_pred CCCCCcccccceeecceEE---EcCCCEEEEECCCCCChhHHHHHhccCCCC--CEEEEEEEcCChHHHHHHHHHhhccC
Confidence 3456789999999999986 889999999999999999999877753321 23333333222222 22222 2211
Q ss_pred -CCC--eEEeCCCC--HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 172 -AEN--LLIAQPDS--AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 172 -~~~--l~i~~~~~--~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.++ +.+...+. .+.. ....+.+..++.--++++||++.+.
T Consensus 215 ~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 215 GRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred CcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 222 22222222 2221 2233444445556689999999876
No 479
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.55 E-value=0.00074 Score=55.75 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+.+|+++-|.||+|||||||..-++...+
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhhcc
Confidence 56899999999999999999876666554
No 480
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00084 Score=66.17 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC--CCCChHHHHHcCCCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE--NALDPSLAEAMGIDAE 173 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E--~~~~~~~~~~~g~~~~ 173 (315)
+++|+.+.|+|++|+||||+...++.-.....+...+-+.+ +-....+.+.+.+..+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 67999999999999999999988777666555554443222 2222346666665444
No 481
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.54 E-value=0.00011 Score=71.12 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=40.5
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
....+.+.||+..+|.++. +.+|+.+.|.|++|+||||++..++...
T Consensus 133 ~~~~~~l~TGi~aID~ll~---I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 133 RAVDTPLDVGVNAINGLLT---IGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccccccceeeccceEe---EecceEEEEECCCCCCccHHHHHHhccc
Confidence 3456889999999999976 8899999999999999999987665543
No 482
>PLN03232 ABC transporter C family member; Provisional
Probab=97.53 E-value=0.00036 Score=77.67 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+++|+.+.|+|++|+||||++..+..-.....|.+ +++.
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I-~IdG 1297 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDD 1297 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE-EECC
Confidence 67999999999999999999988877665555554 4543
No 483
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.53 E-value=0.00045 Score=66.92 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHH-HHcCCC-
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLA-EAMGID- 171 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~-~~~g~~- 171 (315)
....+.+.||+..+|.++. +.+|+.+.|.|++|+|||||+..++..... ...++..-.+...+- ... ...+-.
T Consensus 123 ~~i~~~l~tG~~~id~l~~---i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~~~~ev~~~~~~~~~~~~ 198 (422)
T TIGR02546 123 QPIDQPLPTGVRAIDGLLT---CGEGQRIGIFAGAGVGKSTLLGMIARGASA-DVNVIALIGERGREVREFIEHHLGEEG 198 (422)
T ss_pred cCcccccCCCceeehhhcc---ccCCCEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEccCCcCHHHHHHHHhcccc
Confidence 3456789999999999965 789999999999999999998777665432 222222222333332 222 222221
Q ss_pred CCC-eEEeCCC---CHHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 172 AEN-LLIAQPD---SAENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 172 ~~~-l~i~~~~---~~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.++ +.+.... ....+ ....+.+..++.--++++|+++.+.
T Consensus 199 ~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a 248 (422)
T TIGR02546 199 RKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFA 248 (422)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHH
Confidence 222 2222221 12111 2223334445555688999999765
No 484
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.52 E-value=0.00024 Score=63.68 Aligned_cols=89 Identities=21% Similarity=0.303 Sum_probs=55.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---------HHHHHcCCCCCCeEEeCCCC---HHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---------SLAEAMGIDAENLLIAQPDS---AENL 186 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---------~~~~~~g~~~~~l~i~~~~~---~e~~ 186 (315)
+..++.|+||||+|||||.-.++..+.+.|.+|..+..+.+.+. .|+..+.- .+++++....+ .-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~-d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSR-DPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHT-STTEEEEEE---SSHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCC-CCCEEEeecCcCCCCCCc
Confidence 45689999999999999999999999999999999887765432 24444332 24566554332 2222
Q ss_pred H---HHHHHHHHcCCccEEeehhHh
Q 021239 187 L---SVVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 187 ~---~~i~~l~~~~~~~lVVIDsl~ 208 (315)
. ..+-.+++..++++|+|..+.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVG 131 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVG 131 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEES
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCC
Confidence 2 223344566789999998765
No 485
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.52 E-value=0.00077 Score=65.92 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=51.9
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALD 161 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~ 161 (315)
....+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+..+ .+..++|...-+...
T Consensus 139 ~~i~e~L~TGIraID~l~p---igkGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgr 203 (494)
T CHL00060 139 DTKLSIFETGIKVVDLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTR 203 (494)
T ss_pred ccccceeecCceeeeccCC---cccCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCch
Confidence 3456889999999999987 779999999999999999999999998543 346677776544443
No 486
>PRK05922 type III secretion system ATPase; Validated
Probab=97.52 E-value=0.0005 Score=66.47 Aligned_cols=112 Identities=19% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEE-ecCCCCCh-HHHHHc-C-C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL-DVENALDP-SLAEAM-G-I 170 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i-~~E~~~~~-~~~~~~-g-~ 170 (315)
....+.+.||+..+|-++. +.+|+.+.|.|++|+|||||+..++..... . .+.|. -.|...+. ...+.. + .
T Consensus 135 ~~i~e~l~TGIr~ID~ll~---I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~-d-~gvi~liGerg~ev~eyl~q~~~~~ 209 (434)
T PRK05922 135 QPIQEIFPTGIKAIDAFLT---LGKGQRIGVFSEPGSGKSSLLSTIAKGSKS-T-INVIALIGERGREVREYIEQHKEGL 209 (434)
T ss_pred CCcceecCCCceeecceEE---EcCCcEEEEECCCCCChHHHHHHHhccCCC-C-ceEEEEeCCCCchHHHHHHHHHhhc
Confidence 3456789999999999876 889999999999999999998777755432 2 23332 22332221 222221 1 2
Q ss_pred CCC-CeEEeC-CC--CHHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 171 DAE-NLLIAQ-PD--SAENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 171 ~~~-~l~i~~-~~--~~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
..+ .+.+.. .+ +.+.. ....+.+..++.--++++||++.+.
T Consensus 210 ~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A 260 (434)
T PRK05922 210 AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWI 260 (434)
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 222 233332 22 12222 2233444455556689999999876
No 487
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.52 E-value=0.0019 Score=58.64 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.+|.|.++.|+|.+|||||||+..+...
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l~~ 44 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTLYP 44 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHHHH
Confidence 4789999999999999999999877543
No 488
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.51 E-value=0.0007 Score=67.29 Aligned_cols=124 Identities=17% Similarity=0.224 Sum_probs=74.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--------CCeEEEEecCCCC---Ch---H----------------HH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL--------GGYCAYLDVENAL---DP---S----------------LA 165 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--------g~~v~~i~~E~~~---~~---~----------------~~ 165 (315)
.+.+|+-+.|.||+|+|||||+..++...... +-++.||+-+... .. + ..
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 57899999999999999999999887665432 2357788855421 10 1 11
Q ss_pred HHcCCCCCCeE-EeCCCC-HHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHH
Q 021239 166 EAMGIDAENLL-IAQPDS-AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (315)
Q Consensus 166 ~~~g~~~~~l~-i~~~~~-~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~ 243 (315)
.++++..+... -....+ .|...-.+..+ --.++.++|+|..+.... . ..+..|...+
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~l-l~~~pNvLiLDEPTNhLD--------------i------~s~~aLe~aL 482 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKL-LLQPPNLLLLDEPTNHLD--------------I------ESLEALEEAL 482 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHH-hccCCCEEEEcCCCccCC--------------H------HHHHHHHHHH
Confidence 22333332221 001111 22222222222 235899999998876662 1 1233445555
Q ss_pred hccCcEEEEEecccccc
Q 021239 244 CQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 244 ~~~~i~VI~inq~~~~~ 260 (315)
.++.-+||+++|-+.=+
T Consensus 483 ~~f~Gtvl~VSHDr~Fl 499 (530)
T COG0488 483 LDFEGTVLLVSHDRYFL 499 (530)
T ss_pred HhCCCeEEEEeCCHHHH
Confidence 89999999999987665
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.51 E-value=0.00043 Score=60.11 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=44.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHHHHHcCCCCCCeEEeC--C-CCHHHHHHHHHHHHHcC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEAMGIDAENLLIAQ--P-DSAENLLSVVDTLTKSG 197 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~--~-~~~e~~~~~i~~l~~~~ 197 (315)
+++|+||+|+||||++..++...... ++.++ ..|++.+...... .-.+.+ . .....+.+.++..+. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~--t~e~~~E~~~~~~------~~~i~q~~vg~~~~~~~~~i~~aLr-~ 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL--TIEDPIEFVHESK------RSLINQREVGLDTLSFENALKAALR-Q 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEE--EEcCCccccccCc------cceeeecccCCCccCHHHHHHHHhc-C
Confidence 78999999999999998887777644 33443 3444332110000 001111 0 012234455555544 3
Q ss_pred CccEEeehhH
Q 021239 198 SIDVIVVDSV 207 (315)
Q Consensus 198 ~~~lVVIDsl 207 (315)
+|+++++|.+
T Consensus 74 ~pd~ii~gEi 83 (198)
T cd01131 74 DPDVILVGEM 83 (198)
T ss_pred CcCEEEEcCC
Confidence 7999999986
No 490
>PRK13409 putative ATPase RIL; Provisional
Probab=97.51 E-value=0.00036 Score=70.51 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 46899999999999999999988887655444454
No 491
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.50 E-value=0.00043 Score=66.93 Aligned_cols=110 Identities=22% Similarity=0.306 Sum_probs=68.8
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HH-HHHc---CCCC
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SL-AEAM---GIDA 172 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~-~~~~---g~~~ 172 (315)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.+.. ....++.+..|...+- +. ...+ |+.-
T Consensus 137 ~~~l~TGiraID~ll~---I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~ 212 (432)
T PRK06793 137 TDVFETGIKSIDSMLT---IGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERGREVKDFIRKELGEEGMRK 212 (432)
T ss_pred hhccCCCCEEEeccce---ecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCcccHHHHHHHHhhhcccce
Confidence 4568899999999875 78999999999999999999988877653 3334444444444432 22 1122 2221
Q ss_pred CCeEEeCCCC--HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 173 ENLLIAQPDS--AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 173 ~~l~i~~~~~--~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.-+.....+. .... ....+.+..+++.-++++|+++.+.
T Consensus 213 tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a 259 (432)
T PRK06793 213 SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFA 259 (432)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHH
Confidence 1122222221 1111 1223445566788999999999886
No 492
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00033 Score=69.98 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
-+.+|+++.|.||+|+|||||+..++.....
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p 53 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDLEP 53 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999988876543
No 493
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=97.50 E-value=2.1e-05 Score=72.92 Aligned_cols=144 Identities=22% Similarity=0.181 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++....+.+++++...+. .-.+.............+++|.-..+.-++.+|.+.+-.+..+++.-+||+...+......
T Consensus 5 ~~~~~~~~al~~~~~~~~-~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~ 83 (326)
T KOG1433|consen 5 QKRLALQKALEEIGLSPA-PVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPM 83 (326)
T ss_pred HHHHHhhHHHHhcccCcc-chhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHH
Confidence 445566667788776555 2222233333345567777777777777777899999999999999999999999988873
Q ss_pred -HhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHH-HHcCCccEEeehhHhh
Q 021239 145 -QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTL-TKSGSIDVIVVDSVAA 209 (315)
Q Consensus 145 -~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l-~~~~~~~lVVIDsl~~ 209 (315)
.+++..+.+.+.+...+......++.......+-+|.+....+...... ......++++||+...
T Consensus 84 ~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~ 150 (326)
T KOG1433|consen 84 LQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTEST 150 (326)
T ss_pred HHhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchh
Confidence 6678888889988888888888777777777888888877666543333 2456789999999995
No 494
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00081 Score=61.31 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=62.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---------HHHHHcCCCCCCeEEeCCCC---HHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---------SLAEAMGIDAENLLIAQPDS---AENL 186 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---------~~~~~~g~~~~~l~i~~~~~---~e~~ 186 (315)
.-.++.|+|+||+|||||.-.+...+..+|.+|..+..+.+.+. .|+.++..+ .++++....+ .-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~-~~vFiRs~~srG~lGGl 128 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVD-PGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccC-CCeEEeecCCCccchhh
Confidence 44589999999999999999999999999999999888776553 355555443 3555554432 1122
Q ss_pred ---HHHHHHHHHcCCccEEeehhHh
Q 021239 187 ---LSVVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 187 ---~~~i~~l~~~~~~~lVVIDsl~ 208 (315)
...+-.+++..++|+|+|..+.
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVG 153 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVG 153 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecC
Confidence 2222334566789999987665
No 495
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.50 E-value=0.0006 Score=62.27 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=56.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC-------CCChHHHHHcCCC------CCCeEE-eCCCCHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-------ALDPSLAEAMGID------AENLLI-AQPDSAENLL 187 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~-------~~~~~~~~~~g~~------~~~l~i-~~~~~~e~~~ 187 (315)
++.|+|++|||||||+..++..+..+| +|.++..+. ..+..+....|.+ .+...+ ....+.++++
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~~v~~~s~~~~~~~~~~~~l~~~l 81 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGADVVYGLTDGEWVASGRDRSLDDAL 81 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCcEEEEecCCeEEEEecCCCHHHHH
Confidence 688999999999999999999999988 899998764 2223444555433 333322 3334555554
Q ss_pred HHHHHHHHcCCccEEeehhHhhh
Q 021239 188 SVVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 188 ~~i~~l~~~~~~~lVVIDsl~~l 210 (315)
..+. .+.|+|+||.+...
T Consensus 82 ~~l~-----~~~D~vlVEG~k~~ 99 (274)
T PRK14493 82 DDLA-----PGMDYAVVEGFKDS 99 (274)
T ss_pred HhhC-----cCCCEEEEECCCCC
Confidence 4332 35789999877653
No 496
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.49 E-value=0.00061 Score=65.92 Aligned_cols=112 Identities=23% Similarity=0.261 Sum_probs=68.4
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEE-ecCCCCCh-H-HHHHcCCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL-DVENALDP-S-LAEAMGID 171 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i-~~E~~~~~-~-~~~~~g~~ 171 (315)
....+.+.||+..+|.++. +.+|+.+.|.|++|+|||||+..++..... . .++|. ..|...+. . ....++-.
T Consensus 135 ~~i~~~l~tgi~aid~l~~---i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~-~-v~vi~~iGergrev~e~~~~~l~~~ 209 (434)
T PRK08472 135 GLIDEVFSVGVKSIDGLLT---CGKGQKLGIFAGSGVGKSTLMGMIVKGCLA-P-IKVVALIGERGREIPEFIEKNLGGD 209 (434)
T ss_pred CCcceeccchhHHhhhcce---ecCCCEEEEECCCCCCHHHHHHHHhhccCC-C-EEEEEeeCccchhHHHHHHHHhcCc
Confidence 3456678899999999965 889999999999999999999877765432 2 23332 33333332 2 22333332
Q ss_pred CCCeEEe--CCC--CHHH------HHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 172 AENLLIA--QPD--SAEN------LLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 172 ~~~l~i~--~~~--~~e~------~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.++-.+. ..+ +... ...+.+.+.+++.--++++||++.+.
T Consensus 210 l~~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A 259 (434)
T PRK08472 210 LENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFA 259 (434)
T ss_pred ccceEEEEECCCCCHHHhhHHHHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 3443322 222 1221 12233444455566789999999876
No 497
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.49 E-value=0.00024 Score=70.45 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=28.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~ 153 (315)
+.+|+++.|.|++|+|||||+..++..... ..+.+.|
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~ 320 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEE
Confidence 678999999999999999999888766542 3444433
No 498
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.00064 Score=59.79 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+..++|+||+|+|||||+.+++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~ 53 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV 53 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 4789999999999999999998554
No 499
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.00049 Score=60.97 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
.+.+.++.|.||+|+||||++.+++....
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~ 55 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVL 55 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 35789999999999999999999886543
No 500
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=97.46 E-value=0.001 Score=61.84 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=36.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
.++.+.|.-|+||||++..+|..++.+|.+++.++++.+..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 47899999999999999999999999999999999986543
Done!