Query 021239
Match_columns 315
No_of_seqs 362 out of 3108
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:46:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hr8_A Protein RECA; alpha and 100.0 9.8E-40 3.4E-44 305.8 24.4 241 63-306 4-244 (356)
2 3io5_A Recombination and repai 100.0 2.4E-40 8.2E-45 302.3 18.0 204 97-307 3-216 (333)
3 3cmu_A Protein RECA, recombina 100.0 1.6E-38 5.5E-43 345.0 23.2 240 64-307 1720-1959(2050)
4 3cmw_A Protein RECA, recombina 100.0 4E-38 1.4E-42 339.0 23.0 240 64-307 1376-1615(1706)
5 1u94_A RECA protein, recombina 100.0 4.1E-37 1.4E-41 288.8 22.0 238 64-305 8-245 (356)
6 2zr9_A Protein RECA, recombina 100.0 6.9E-37 2.4E-41 286.9 21.9 239 64-306 6-244 (349)
7 1xp8_A RECA protein, recombina 100.0 9.1E-37 3.1E-41 287.3 22.5 239 63-305 18-257 (366)
8 3cmu_A Protein RECA, recombina 100.0 2.3E-33 7.9E-38 304.7 24.0 240 64-307 1372-1611(2050)
9 3cmw_A Protein RECA, recombina 100.0 9.5E-33 3.3E-37 297.4 22.9 238 64-305 328-565 (1706)
10 2z43_A DNA repair and recombin 100.0 1.3E-30 4.6E-35 242.0 16.6 222 60-293 52-291 (324)
11 1v5w_A DMC1, meiotic recombina 100.0 8.5E-31 2.9E-35 245.2 15.0 224 61-293 68-310 (343)
12 2i1q_A DNA repair and recombin 100.0 5.7E-30 1.9E-34 237.3 17.4 222 60-293 43-292 (322)
13 3lda_A DNA repair protein RAD5 100.0 1.3E-27 4.5E-32 227.3 17.6 192 97-293 156-364 (400)
14 1pzn_A RAD51, DNA repair and r 99.9 4.5E-26 1.6E-30 213.5 18.0 218 64-293 79-319 (349)
15 1n0w_A DNA repair protein RAD5 99.9 9.2E-26 3.2E-30 199.4 17.8 192 97-293 2-210 (243)
16 2zts_A Putative uncharacterize 99.9 5.6E-25 1.9E-29 194.9 14.6 176 96-293 7-209 (251)
17 3bh0_A DNAB-like replicative h 99.9 1E-23 3.5E-28 194.9 21.0 187 97-294 47-268 (315)
18 4a1f_A DNAB helicase, replicat 99.9 5.5E-24 1.9E-28 197.8 17.9 186 97-293 25-242 (338)
19 3bgw_A DNAB-like replicative h 99.9 9.7E-23 3.3E-27 196.6 20.9 187 97-294 176-397 (444)
20 2q6t_A DNAB replication FORK h 99.9 2.7E-22 9.3E-27 193.7 24.0 190 97-294 179-400 (444)
21 2dr3_A UPF0273 protein PH0284; 99.9 4.6E-23 1.6E-27 182.3 16.0 169 99-293 3-198 (247)
22 2cvh_A DNA repair and recombin 99.9 6.5E-23 2.2E-27 178.3 15.6 175 100-293 1-186 (220)
23 1q57_A DNA primase/helicase; d 99.9 3.7E-22 1.3E-26 195.5 18.5 187 96-294 219-444 (503)
24 2r6a_A DNAB helicase, replicat 99.9 2.2E-21 7.4E-26 187.9 20.6 189 96-294 181-401 (454)
25 4a74_A DNA repair and recombin 99.9 6.1E-21 2.1E-25 166.9 16.7 178 97-294 3-202 (231)
26 2w0m_A SSO2452; RECA, SSPF, un 99.8 2.8E-19 9.7E-24 156.1 15.5 169 99-293 3-193 (235)
27 2ehv_A Hypothetical protein PH 99.8 6.7E-18 2.3E-22 149.3 14.2 173 97-292 8-208 (251)
28 1nlf_A Regulatory protein REPA 99.8 2.9E-18 1E-22 155.3 10.8 178 98-293 10-216 (279)
29 1cr0_A DNA primase/helicase; R 99.7 1E-16 3.5E-21 146.1 16.9 188 96-294 12-237 (296)
30 3bs4_A Uncharacterized protein 99.7 4.6E-17 1.6E-21 145.8 13.6 73 100-173 2-76 (260)
31 1tf7_A KAIC; homohexamer, hexa 99.7 4.1E-16 1.4E-20 153.5 18.6 173 97-293 259-444 (525)
32 2vhj_A Ntpase P4, P4; non- hyd 99.6 1E-15 3.5E-20 140.4 5.4 130 99-256 104-235 (331)
33 1tf7_A KAIC; homohexamer, hexa 99.5 5.5E-13 1.9E-17 131.1 15.3 151 97-260 17-188 (525)
34 2b8t_A Thymidine kinase; deoxy 99.1 5.8E-10 2E-14 97.6 10.6 118 118-260 10-129 (223)
35 3ec2_A DNA replication protein 98.6 1.1E-07 3.9E-12 79.4 9.8 42 116-157 34-76 (180)
36 2kjq_A DNAA-related protein; s 98.6 1.1E-07 3.8E-12 77.7 9.1 40 119-158 35-74 (149)
37 4b4t_J 26S protease regulatory 98.6 3E-07 1E-11 86.8 11.2 124 115-260 177-300 (405)
38 4b4t_K 26S protease regulatory 98.6 5.8E-07 2E-11 85.7 12.9 123 116-260 202-324 (428)
39 4b4t_I 26S protease regulatory 98.5 7E-07 2.4E-11 84.8 12.4 124 115-260 211-334 (437)
40 1c9k_A COBU, adenosylcobinamid 98.5 1.5E-07 5.1E-12 79.4 6.9 82 122-212 1-87 (180)
41 3rlf_A Maltose/maltodextrin im 98.5 9.7E-08 3.3E-12 89.7 6.1 35 117-151 26-60 (381)
42 2orw_A Thymidine kinase; TMTK, 98.5 1.2E-07 4.2E-12 80.2 6.2 110 119-258 2-114 (184)
43 1j8m_F SRP54, signal recogniti 98.5 1.2E-06 4.2E-11 79.7 13.0 106 100-209 72-191 (297)
44 4b4t_M 26S protease regulatory 98.5 4E-07 1.4E-11 86.9 10.0 124 115-260 210-333 (434)
45 4g1u_C Hemin import ATP-bindin 98.5 3.2E-07 1.1E-11 82.2 8.7 37 117-153 34-70 (266)
46 4b4t_L 26S protease subunit RP 98.5 7.8E-07 2.7E-11 85.0 11.6 124 115-260 210-333 (437)
47 3tif_A Uncharacterized ABC tra 98.5 2.6E-07 8.8E-12 81.3 7.2 35 117-151 28-62 (235)
48 3gfo_A Cobalt import ATP-bindi 98.4 3.2E-07 1.1E-11 82.6 7.7 39 117-156 31-69 (275)
49 3tui_C Methionine import ATP-b 98.4 2.8E-07 9.4E-12 86.1 7.5 128 116-260 50-227 (366)
50 2pcj_A ABC transporter, lipopr 98.4 3.2E-07 1.1E-11 80.0 7.2 37 117-153 27-63 (224)
51 3fvq_A Fe(3+) IONS import ATP- 98.4 2E-07 6.9E-12 86.9 5.7 36 116-151 26-61 (359)
52 2it1_A 362AA long hypothetical 98.4 3.7E-07 1.3E-11 85.3 7.0 35 117-151 26-60 (362)
53 3h4m_A Proteasome-activating n 98.4 2.1E-06 7.3E-11 76.7 11.7 123 116-260 47-169 (285)
54 2olj_A Amino acid ABC transpor 98.4 4.7E-07 1.6E-11 81.0 7.2 38 116-153 46-83 (263)
55 2yyz_A Sugar ABC transporter, 98.4 3.2E-07 1.1E-11 85.6 6.0 35 117-151 26-60 (359)
56 1vpl_A ABC transporter, ATP-bi 98.4 4.7E-07 1.6E-11 80.6 6.8 37 116-152 37-73 (256)
57 1oft_A SULA, hypothetical prot 98.4 3.4E-06 1.2E-10 69.3 11.3 134 98-253 22-158 (161)
58 4b4t_H 26S protease regulatory 98.4 1.8E-06 6.2E-11 82.7 11.0 123 115-259 238-360 (467)
59 1v43_A Sugar-binding transport 98.4 3.7E-07 1.3E-11 85.6 5.9 35 117-151 34-68 (372)
60 1z47_A CYSA, putative ABC-tran 98.4 3.8E-07 1.3E-11 85.0 5.9 35 117-151 38-72 (355)
61 2onk_A Molybdate/tungstate ABC 98.3 4E-07 1.4E-11 80.3 4.5 36 117-153 22-57 (240)
62 1g6h_A High-affinity branched- 98.3 1.1E-06 3.8E-11 78.2 7.2 38 116-153 29-66 (257)
63 3d31_A Sulfate/molybdate ABC t 98.3 7E-07 2.4E-11 83.0 5.8 67 117-184 23-90 (348)
64 1g29_1 MALK, maltose transport 98.3 4.2E-07 1.4E-11 85.3 4.1 35 117-151 26-60 (372)
65 1xwi_A SKD1 protein; VPS4B, AA 98.3 6E-06 2.1E-10 75.8 11.8 80 115-212 40-119 (322)
66 2qby_A CDC6 homolog 1, cell di 98.2 6.4E-06 2.2E-10 76.2 11.5 90 118-211 43-141 (386)
67 1fnn_A CDC6P, cell division co 98.2 2.2E-05 7.6E-10 72.8 15.0 85 122-210 46-137 (389)
68 3kl4_A SRP54, signal recogniti 98.2 9.4E-06 3.2E-10 77.4 12.5 100 106-208 77-189 (433)
69 1xx6_A Thymidine kinase; NESG, 98.2 3.2E-06 1.1E-10 71.9 8.2 110 118-257 6-118 (191)
70 1vma_A Cell division protein F 98.2 1.3E-05 4.4E-10 73.1 12.8 88 118-208 102-196 (306)
71 2qi9_C Vitamin B12 import ATP- 98.2 1.4E-06 4.8E-11 77.2 6.2 35 117-152 23-57 (249)
72 2j9r_A Thymidine kinase; TK1, 98.2 2.7E-06 9.2E-11 73.5 7.3 112 118-259 26-140 (214)
73 1b0u_A Histidine permease; ABC 98.2 2.5E-06 8.7E-11 76.1 7.3 38 116-153 28-65 (262)
74 2nq2_C Hypothetical ABC transp 98.2 1.1E-06 3.9E-11 78.0 4.7 29 117-145 28-56 (253)
75 1oxx_K GLCV, glucose, ABC tran 98.2 3.2E-07 1.1E-11 85.5 1.2 29 117-145 28-56 (353)
76 1ji0_A ABC transporter; ATP bi 98.2 3E-06 1E-10 74.6 6.8 36 117-152 29-64 (240)
77 2v1u_A Cell division control p 98.1 1.6E-05 5.5E-10 73.5 12.0 90 118-211 42-143 (387)
78 2ihy_A ABC transporter, ATP-bi 98.1 1.1E-06 3.8E-11 79.2 3.7 36 117-152 44-79 (279)
79 3bos_A Putative DNA replicatio 98.1 6.1E-06 2.1E-10 71.2 8.2 50 106-158 41-90 (242)
80 1l8q_A Chromosomal replication 98.1 2E-05 6.9E-10 71.9 12.0 40 118-157 35-74 (324)
81 3dm5_A SRP54, signal recogniti 98.1 1.5E-05 5.2E-10 76.1 11.5 89 119-209 99-193 (443)
82 2orv_A Thymidine kinase; TP4A 98.1 2.1E-05 7E-10 68.6 11.1 109 119-259 18-128 (234)
83 2ixe_A Antigen peptide transpo 98.1 4.5E-06 1.6E-10 74.8 6.6 37 116-152 41-77 (271)
84 1jbk_A CLPB protein; beta barr 98.1 3E-05 1E-09 63.9 11.1 77 119-212 42-129 (195)
85 2r8r_A Sensor protein; KDPD, P 98.1 1E-05 3.4E-10 70.5 8.3 84 119-210 4-96 (228)
86 2ff7_A Alpha-hemolysin translo 98.1 3.6E-06 1.2E-10 74.4 5.6 37 117-153 32-68 (247)
87 1lv7_A FTSH; alpha/beta domain 98.1 3.5E-05 1.2E-09 67.9 12.0 72 122-212 47-118 (257)
88 3cf2_A TER ATPase, transitiona 98.0 9.9E-06 3.4E-10 82.8 8.6 121 115-260 233-353 (806)
89 3eie_A Vacuolar protein sortin 98.0 1.4E-05 4.8E-10 73.1 8.8 79 115-212 46-124 (322)
90 2yhs_A FTSY, cell division pro 98.0 3.6E-05 1.2E-09 74.4 11.9 42 117-158 290-331 (503)
91 3cf0_A Transitional endoplasmi 98.0 2.7E-05 9.3E-10 70.5 10.5 122 116-260 45-167 (301)
92 1w4r_A Thymidine kinase; type 98.0 1.2E-05 4.2E-10 68.3 7.5 116 118-267 18-135 (195)
93 2z4s_A Chromosomal replication 98.0 3.8E-05 1.3E-09 73.5 11.8 39 120-158 130-170 (440)
94 1rj9_A FTSY, signal recognitio 98.0 3.7E-05 1.2E-09 70.1 11.2 40 119-158 101-140 (304)
95 3e70_C DPA, signal recognition 98.0 2E-05 7E-10 72.5 9.5 42 118-159 127-168 (328)
96 2qz4_A Paraplegin; AAA+, SPG7, 98.0 2.5E-05 8.6E-10 68.6 9.6 78 116-212 35-112 (262)
97 1sgw_A Putative ABC transporte 98.0 3E-06 1E-10 73.4 3.1 35 117-151 32-66 (214)
98 3nh6_A ATP-binding cassette SU 98.0 6E-06 2E-10 75.4 5.3 35 117-151 77-111 (306)
99 2p65_A Hypothetical protein PF 98.0 5.5E-05 1.9E-09 62.2 10.8 80 119-212 42-129 (187)
100 2qp9_X Vacuolar protein sortin 98.0 3.1E-05 1.1E-09 71.9 10.3 79 115-212 79-157 (355)
101 3b9p_A CG5977-PA, isoform A; A 98.0 4E-05 1.4E-09 68.8 10.7 76 118-212 52-127 (297)
102 2px0_A Flagellar biosynthesis 98.0 2.7E-05 9.2E-10 70.7 9.5 80 118-205 103-189 (296)
103 4gp7_A Metallophosphoesterase; 98.0 2.1E-06 7.3E-11 71.3 1.9 23 117-139 6-28 (171)
104 3e2i_A Thymidine kinase; Zn-bi 97.9 1.6E-05 5.4E-10 68.7 7.1 111 117-257 25-138 (219)
105 2ce7_A Cell division protein F 97.9 0.00011 3.7E-09 71.1 13.4 121 116-260 47-167 (476)
106 2w58_A DNAI, primosome compone 97.9 4.8E-05 1.6E-09 64.3 9.8 37 121-157 55-91 (202)
107 2qgz_A Helicase loader, putati 97.9 3.2E-05 1.1E-09 70.5 8.9 38 120-157 152-190 (308)
108 1zu4_A FTSY; GTPase, signal re 97.9 3.9E-05 1.3E-09 70.4 9.4 92 118-210 103-203 (320)
109 3t15_A Ribulose bisphosphate c 97.9 8.6E-05 2.9E-09 67.1 11.2 82 116-212 32-113 (293)
110 1ls1_A Signal recognition part 97.9 4.8E-05 1.7E-09 68.9 9.4 87 119-208 97-190 (295)
111 2j37_W Signal recognition part 97.9 0.00018 6.2E-09 69.9 14.0 101 106-210 81-195 (504)
112 2v3c_C SRP54, signal recogniti 97.9 1.7E-05 5.8E-10 75.8 6.6 54 106-160 79-139 (432)
113 3vfd_A Spastin; ATPase, microt 97.8 0.00013 4.3E-09 68.5 12.0 76 118-212 146-221 (389)
114 2chg_A Replication factor C sm 97.8 8.1E-05 2.8E-09 62.8 9.6 68 123-211 41-115 (226)
115 1g5t_A COB(I)alamin adenosyltr 97.8 0.00016 5.5E-09 61.5 11.3 92 120-211 28-133 (196)
116 3d8b_A Fidgetin-like protein 1 97.8 0.00011 3.8E-09 68.2 11.2 76 118-212 115-190 (357)
117 2ffh_A Protein (FFH); SRP54, s 97.8 7.3E-05 2.5E-09 71.1 10.0 87 119-209 97-191 (425)
118 3j16_B RLI1P; ribosome recycli 97.8 8.5E-05 2.9E-09 73.9 10.8 128 115-260 373-531 (608)
119 2yz2_A Putative ABC transporte 97.8 5.1E-06 1.8E-10 74.3 1.6 36 116-151 29-64 (266)
120 3ozx_A RNAse L inhibitor; ATP 97.8 4.2E-05 1.4E-09 75.1 8.3 126 117-260 291-449 (538)
121 3b5x_A Lipid A export ATP-bind 97.8 5.6E-05 1.9E-09 74.9 9.2 38 116-153 365-402 (582)
122 3ice_A Transcription terminati 97.8 6.4E-05 2.2E-09 70.4 9.0 108 98-211 155-274 (422)
123 3hu3_A Transitional endoplasmi 97.8 6.7E-05 2.3E-09 72.8 9.5 118 116-258 234-351 (489)
124 4dzz_A Plasmid partitioning pr 97.8 8E-05 2.7E-09 62.8 8.9 84 122-210 3-87 (206)
125 3jvv_A Twitching mobility prot 97.8 1.8E-05 6.1E-10 73.7 5.0 110 118-260 121-234 (356)
126 3syl_A Protein CBBX; photosynt 97.8 0.00015 5.3E-09 65.2 11.0 76 118-212 65-144 (309)
127 1yqt_A RNAse L inhibitor; ATP- 97.8 1.7E-05 5.7E-10 78.0 4.6 126 117-260 309-465 (538)
128 2d2e_A SUFC protein; ABC-ATPas 97.7 6.7E-05 2.3E-09 66.3 8.0 68 117-185 26-99 (250)
129 4fcw_A Chaperone protein CLPB; 97.7 0.00012 4.2E-09 65.8 10.0 85 120-211 47-132 (311)
130 3bk7_A ABC transporter ATP-bin 97.7 0.0001 3.4E-09 73.4 10.0 126 117-260 379-535 (607)
131 2zan_A Vacuolar protein sortin 97.7 2.2E-05 7.6E-10 75.2 5.2 80 115-212 162-241 (444)
132 3b60_A Lipid A export ATP-bind 97.7 6E-05 2.1E-09 74.6 8.3 38 117-155 366-403 (582)
133 3qf4_B Uncharacterized ABC tra 97.7 4.6E-05 1.6E-09 75.8 6.9 35 117-151 378-412 (598)
134 1yqt_A RNAse L inhibitor; ATP- 97.7 0.00013 4.4E-09 71.6 10.0 28 117-144 44-71 (538)
135 2xxa_A Signal recognition part 97.7 0.00013 4.4E-09 69.7 9.8 83 120-208 100-193 (433)
136 3n70_A Transport activator; si 97.7 3.6E-05 1.2E-09 61.9 5.0 38 119-157 23-60 (145)
137 3oaa_A ATP synthase subunit al 97.7 0.00025 8.7E-09 68.3 11.6 114 95-211 140-267 (513)
138 2qby_B CDC6 homolog 3, cell di 97.7 0.0001 3.4E-09 68.4 8.5 87 120-211 45-146 (384)
139 2ck3_A ATP synthase subunit al 97.7 0.00031 1.1E-08 67.9 12.0 113 96-211 141-275 (510)
140 2x8a_A Nuclear valosin-contain 97.7 0.00013 4.6E-09 65.2 8.8 75 117-212 43-117 (274)
141 3zq6_A Putative arsenical pump 97.7 0.00017 5.9E-09 66.0 9.8 40 121-160 15-54 (324)
142 2qe7_A ATP synthase subunit al 97.7 0.00025 8.5E-09 68.4 11.0 114 95-211 140-267 (502)
143 4a82_A Cystic fibrosis transme 97.6 4.7E-05 1.6E-09 75.4 5.9 35 117-151 364-398 (578)
144 3cf2_A TER ATPase, transitiona 97.6 2.5E-05 8.5E-10 79.9 3.9 118 115-254 506-623 (806)
145 2r9v_A ATP synthase subunit al 97.6 0.00023 7.9E-09 68.7 10.0 113 96-211 154-280 (515)
146 3gd7_A Fusion complex of cysti 97.6 4.2E-05 1.4E-09 72.1 4.7 38 117-156 44-81 (390)
147 1ypw_A Transitional endoplasmi 97.6 0.00013 4.6E-09 74.9 8.4 120 116-260 234-353 (806)
148 2yl4_A ATP-binding cassette SU 97.6 9.5E-05 3.2E-09 73.4 7.0 38 117-155 367-404 (595)
149 1zp6_A Hypothetical protein AT 97.6 4.6E-05 1.6E-09 63.7 4.1 39 116-157 5-43 (191)
150 3ug7_A Arsenical pump-driving 97.6 0.00054 1.8E-08 63.4 11.7 54 116-171 22-75 (349)
151 3end_A Light-independent proto 97.6 0.00011 3.6E-09 66.6 6.7 42 119-160 40-81 (307)
152 1w5s_A Origin recognition comp 97.6 0.00024 8.3E-09 66.3 9.4 89 119-211 49-151 (412)
153 3qf4_A ABC transporter, ATP-bi 97.6 3.9E-05 1.3E-09 76.1 4.1 38 117-155 366-403 (587)
154 3ozx_A RNAse L inhibitor; ATP 97.6 5.8E-05 2E-09 74.1 5.2 28 117-144 22-49 (538)
155 2ck3_D ATP synthase subunit be 97.6 0.00053 1.8E-08 65.8 11.7 113 96-211 132-266 (482)
156 3j16_B RLI1P; ribosome recycli 97.5 3.6E-05 1.2E-09 76.6 3.5 29 117-145 100-128 (608)
157 1sxj_E Activator 1 40 kDa subu 97.5 0.0002 6.9E-09 65.7 8.3 24 123-146 39-62 (354)
158 3bk7_A ABC transporter ATP-bin 97.5 0.00019 6.6E-09 71.4 8.5 28 117-144 114-141 (607)
159 3ux8_A Excinuclease ABC, A sub 97.5 0.00026 8.7E-09 71.3 9.5 22 116-137 40-61 (670)
160 1fx0_B ATP synthase beta chain 97.5 0.00065 2.2E-08 65.4 11.8 114 95-211 143-279 (498)
161 1sky_E F1-ATPase, F1-ATP synth 97.5 0.00047 1.6E-08 66.1 10.8 114 95-211 129-258 (473)
162 1d2n_A N-ethylmaleimide-sensit 97.5 0.00018 6.1E-09 63.8 7.3 76 116-212 60-138 (272)
163 1ixz_A ATP-dependent metallopr 97.5 0.00017 5.7E-09 63.3 7.0 35 116-155 47-81 (254)
164 1wcv_1 SOJ, segregation protei 97.5 0.00026 9E-09 62.3 8.2 89 119-209 5-122 (257)
165 3cio_A ETK, tyrosine-protein k 97.5 0.00043 1.5E-08 62.7 9.8 41 119-159 103-144 (299)
166 1fx0_A ATP synthase alpha chai 97.5 0.00019 6.6E-09 69.2 7.5 113 96-211 142-268 (507)
167 3bfv_A CAPA1, CAPB2, membrane 97.5 0.00074 2.5E-08 60.2 10.9 42 119-160 81-123 (271)
168 1sxj_A Activator 1 95 kDa subu 97.5 0.00053 1.8E-08 66.8 10.5 42 118-162 75-116 (516)
169 3uie_A Adenylyl-sulfate kinase 97.4 0.00015 5.3E-09 61.3 5.6 40 118-157 23-62 (200)
170 1sxj_D Activator 1 41 kDa subu 97.4 0.0012 4E-08 60.3 12.0 49 105-156 46-97 (353)
171 3fkq_A NTRC-like two-domain pr 97.4 0.00079 2.7E-08 62.8 10.9 40 118-157 141-181 (373)
172 3thx_A DNA mismatch repair pro 97.4 0.00026 8.9E-09 73.6 8.3 28 117-144 659-686 (934)
173 2yvu_A Probable adenylyl-sulfa 97.4 0.00013 4.3E-09 61.0 4.9 40 118-157 11-50 (186)
174 2qen_A Walker-type ATPase; unk 97.4 0.00024 8.2E-09 64.6 7.1 87 120-211 31-141 (350)
175 3b9q_A Chloroplast SRP recepto 97.4 0.00016 5.4E-09 65.7 5.7 42 117-158 97-138 (302)
176 1njg_A DNA polymerase III subu 97.4 0.00049 1.7E-08 58.5 8.6 26 121-146 46-71 (250)
177 3iqw_A Tail-anchored protein t 97.4 0.00078 2.7E-08 62.0 10.4 50 107-159 6-55 (334)
178 2pez_A Bifunctional 3'-phospho 97.4 0.00017 5.9E-09 59.7 5.5 39 118-156 3-41 (179)
179 3c8u_A Fructokinase; YP_612366 97.4 0.00017 5.7E-09 61.5 5.5 42 117-158 19-60 (208)
180 2pt7_A CAG-ALFA; ATPase, prote 97.4 3.6E-05 1.2E-09 70.9 1.3 83 118-209 169-251 (330)
181 2qm8_A GTPase/ATPase; G protei 97.4 0.00013 4.4E-09 67.3 5.1 93 116-209 51-158 (337)
182 3l0o_A Transcription terminati 97.4 0.00038 1.3E-08 65.1 8.0 107 99-211 157-275 (427)
183 4a8j_A Elongator complex prote 97.4 0.00012 4.1E-09 67.7 4.5 47 97-146 17-67 (361)
184 2woj_A ATPase GET3; tail-ancho 97.4 0.00062 2.1E-08 63.2 9.4 51 106-159 7-59 (354)
185 1ye8_A Protein THEP1, hypothet 97.4 0.00056 1.9E-08 57.1 8.0 23 122-144 2-24 (178)
186 3thx_B DNA mismatch repair pro 97.4 0.00013 4.4E-09 75.8 4.9 28 117-144 670-697 (918)
187 3kjh_A CO dehydrogenase/acetyl 97.3 0.00023 7.7E-09 61.8 5.8 38 123-160 3-40 (254)
188 1rz3_A Hypothetical protein rb 97.3 0.00025 8.6E-09 60.1 5.8 42 117-158 19-60 (201)
189 1iy2_A ATP-dependent metallopr 97.3 0.00036 1.2E-08 62.1 6.8 35 116-155 71-105 (278)
190 3io3_A DEHA2D07832P; chaperone 97.3 0.00043 1.5E-08 64.1 7.6 59 107-170 8-68 (348)
191 3co5_A Putative two-component 97.3 9.6E-05 3.3E-09 59.3 2.7 24 120-143 27-50 (143)
192 3la6_A Tyrosine-protein kinase 97.3 0.001 3.5E-08 59.8 9.9 43 119-161 91-134 (286)
193 1sxj_C Activator 1 40 kDa subu 97.3 0.00049 1.7E-08 63.1 7.8 68 123-211 49-123 (340)
194 1sq5_A Pantothenate kinase; P- 97.3 0.00037 1.3E-08 63.4 6.7 94 117-211 77-197 (308)
195 2og2_A Putative signal recogni 97.3 0.00027 9.2E-09 65.8 5.8 42 117-158 154-195 (359)
196 3g5u_A MCG1178, multidrug resi 97.3 0.00029 9.9E-09 75.9 6.8 34 117-150 413-446 (1284)
197 3u61_B DNA polymerase accessor 97.3 0.0016 5.5E-08 59.0 10.8 79 106-211 36-118 (324)
198 4f4c_A Multidrug resistance pr 97.3 0.00012 4E-09 79.2 3.6 39 117-156 1102-1140(1321)
199 4f4c_A Multidrug resistance pr 97.3 0.00031 1.1E-08 75.9 6.8 34 117-150 441-474 (1321)
200 2p67_A LAO/AO transport system 97.3 0.001 3.5E-08 61.3 9.4 44 117-160 53-96 (341)
201 1ypw_A Transitional endoplasmi 97.2 4.6E-05 1.6E-09 78.3 0.2 79 115-212 506-584 (806)
202 3p32_A Probable GTPase RV1496/ 97.2 0.00069 2.4E-08 62.8 8.2 88 119-208 78-181 (355)
203 2eyu_A Twitching motility prot 97.2 0.00033 1.1E-08 62.3 5.6 39 117-155 22-61 (261)
204 2woo_A ATPase GET3; tail-ancho 97.2 0.0017 5.9E-08 59.5 10.5 40 120-159 19-58 (329)
205 1sxj_B Activator 1 37 kDa subu 97.2 0.0019 6.5E-08 58.0 10.7 82 106-211 31-120 (323)
206 1kgd_A CASK, peripheral plasma 97.2 0.00021 7.3E-09 59.5 3.9 29 116-144 1-29 (180)
207 2obl_A ESCN; ATPase, hydrolase 97.2 0.00023 7.9E-09 65.9 4.5 45 98-145 52-96 (347)
208 1ihu_A Arsenical pump-driving 97.2 0.00093 3.2E-08 66.1 9.2 50 119-170 7-56 (589)
209 3pvs_A Replication-associated 97.2 0.0006 2.1E-08 65.3 7.5 69 121-211 51-119 (447)
210 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00042 1.4E-08 67.3 6.5 73 116-212 62-137 (499)
211 1tue_A Replication protein E1; 97.2 0.00016 5.5E-09 62.0 3.1 45 97-144 38-82 (212)
212 1htw_A HI0065; nucleotide-bind 97.2 0.0002 6.9E-09 58.7 3.5 35 116-151 29-63 (158)
213 3te6_A Regulatory protein SIR3 97.2 0.0011 3.8E-08 60.6 8.4 97 107-211 35-145 (318)
214 1hyq_A MIND, cell division inh 97.2 0.0013 4.6E-08 57.6 8.7 38 122-159 5-42 (263)
215 2ius_A DNA translocase FTSK; n 97.2 0.0022 7.6E-08 62.3 10.9 42 117-158 164-209 (512)
216 4eun_A Thermoresistant glucoki 97.1 0.00034 1.2E-08 59.1 4.4 39 118-161 27-65 (200)
217 3vr4_D V-type sodium ATPase su 97.1 0.001 3.5E-08 63.5 8.1 63 96-161 130-196 (465)
218 3q9l_A Septum site-determining 97.1 0.0029 9.8E-08 55.2 10.4 39 121-159 3-42 (260)
219 1wb9_A DNA mismatch repair pro 97.1 0.00061 2.1E-08 69.8 6.8 28 118-145 605-632 (800)
220 2www_A Methylmalonic aciduria 97.1 0.00091 3.1E-08 61.9 7.4 43 118-160 72-114 (349)
221 3tr0_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 59.3 3.7 28 117-144 4-31 (205)
222 2ewv_A Twitching motility prot 97.1 0.0021 7.2E-08 60.0 9.9 39 117-155 133-172 (372)
223 2dpy_A FLII, flagellum-specifi 97.1 0.00044 1.5E-08 66.1 5.2 56 98-157 138-193 (438)
224 1znw_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 59.8 3.7 28 117-144 17-44 (207)
225 2rhm_A Putative kinase; P-loop 97.1 0.00042 1.4E-08 57.7 4.4 29 116-144 1-29 (193)
226 2o8b_B DNA mismatch repair pro 97.0 0.00068 2.3E-08 71.2 6.6 24 120-143 789-812 (1022)
227 1qvr_A CLPB protein; coiled co 97.0 0.0015 5E-08 67.6 9.0 79 120-212 191-277 (854)
228 1mv5_A LMRA, multidrug resista 97.0 0.00017 5.7E-09 63.4 1.7 38 116-153 24-61 (243)
229 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00053 1.8E-08 60.6 5.0 38 119-156 3-40 (260)
230 3gqb_B V-type ATP synthase bet 97.0 0.0012 4.1E-08 63.0 7.6 64 95-161 125-199 (464)
231 3ea0_A ATPase, para family; al 97.0 0.002 6.8E-08 55.7 8.5 41 119-159 3-45 (245)
232 2cbz_A Multidrug resistance-as 97.0 0.00014 4.8E-09 63.7 1.0 31 116-146 27-57 (237)
233 3vr4_A V-type sodium ATPase ca 97.0 0.0028 9.7E-08 61.9 10.0 61 96-161 211-271 (600)
234 1m7g_A Adenylylsulfate kinase; 97.0 0.0007 2.4E-08 57.6 5.2 40 117-156 22-62 (211)
235 3aez_A Pantothenate kinase; tr 97.0 0.00074 2.5E-08 61.6 5.6 43 117-159 87-131 (312)
236 2j41_A Guanylate kinase; GMP, 97.0 0.00044 1.5E-08 58.2 3.7 28 117-144 3-30 (207)
237 2c61_A A-type ATP synthase non 97.0 0.001 3.5E-08 63.7 6.6 113 96-211 131-262 (469)
238 3igf_A ALL4481 protein; two-do 97.0 0.0017 5.9E-08 60.6 8.1 36 121-156 3-38 (374)
239 2pze_A Cystic fibrosis transme 97.0 0.00016 5.6E-09 62.9 1.0 29 117-145 31-59 (229)
240 2v9p_A Replication protein E1; 97.0 0.00091 3.1E-08 60.8 6.0 43 106-153 114-156 (305)
241 1knq_A Gluconate kinase; ALFA/ 97.0 0.00051 1.8E-08 56.4 4.0 38 118-160 6-43 (175)
242 1ewq_A DNA mismatch repair pro 97.0 0.00099 3.4E-08 67.9 6.8 26 120-145 576-601 (765)
243 3asz_A Uridine kinase; cytidin 97.0 0.00072 2.5E-08 57.3 5.0 38 118-158 4-41 (211)
244 1s96_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 59.5 3.8 29 116-144 12-40 (219)
245 3pxi_A Negative regulator of g 96.9 0.0015 5E-08 66.6 7.9 70 122-211 523-592 (758)
246 1ofu_X SULA, hypothetical prot 96.9 0.017 5.7E-07 44.9 12.1 112 120-253 2-116 (119)
247 3b85_A Phosphate starvation-in 96.9 0.00022 7.6E-09 61.2 1.5 35 116-151 18-52 (208)
248 3pfi_A Holliday junction ATP-d 96.9 0.0034 1.2E-07 57.1 9.6 64 121-211 56-119 (338)
249 1z6g_A Guanylate kinase; struc 96.9 0.00042 1.5E-08 59.6 3.2 28 117-144 20-47 (218)
250 1nks_A Adenylate kinase; therm 96.9 0.00099 3.4E-08 55.2 5.3 35 122-156 3-37 (194)
251 1iqp_A RFCS; clamp loader, ext 96.9 0.0018 6.3E-08 58.2 7.4 23 123-145 49-71 (327)
252 1z6t_A APAF-1, apoptotic prote 96.9 0.0027 9.4E-08 62.3 9.2 101 106-208 134-246 (591)
253 1kht_A Adenylate kinase; phosp 96.9 0.00089 3E-08 55.4 4.8 37 120-156 3-39 (192)
254 1jr3_A DNA polymerase III subu 96.9 0.0027 9.2E-08 58.3 8.5 25 121-145 39-63 (373)
255 3ux8_A Excinuclease ABC, A sub 96.9 0.0058 2E-07 61.4 11.3 24 117-140 345-368 (670)
256 3mfy_A V-type ATP synthase alp 96.8 0.003 1E-07 61.6 8.6 111 96-211 206-337 (588)
257 3vaa_A Shikimate kinase, SK; s 96.8 0.00073 2.5E-08 57.0 4.0 28 117-144 22-49 (199)
258 1lvg_A Guanylate kinase, GMP k 96.8 0.00058 2E-08 57.8 3.3 27 118-144 2-28 (198)
259 3tau_A Guanylate kinase, GMP k 96.8 0.00068 2.3E-08 57.7 3.7 27 118-144 6-32 (208)
260 2c9o_A RUVB-like 1; hexameric 96.8 0.00062 2.1E-08 65.3 3.8 80 116-212 59-140 (456)
261 3gqb_A V-type ATP synthase alp 96.8 0.0027 9.3E-08 61.8 8.2 60 96-160 200-259 (578)
262 2fna_A Conserved hypothetical 96.8 0.0025 8.4E-08 57.9 7.4 35 121-158 31-65 (357)
263 2a5y_B CED-4; apoptosis; HET: 96.8 0.003 1E-07 61.9 8.3 92 118-209 150-254 (549)
264 2plr_A DTMP kinase, probable t 96.8 0.0014 4.9E-08 55.1 5.2 36 119-155 3-38 (213)
265 1qvr_A CLPB protein; coiled co 96.7 0.0037 1.3E-07 64.6 9.1 84 121-211 589-673 (854)
266 1yrb_A ATP(GTP)binding protein 96.7 0.0016 5.5E-08 56.9 5.6 41 118-159 12-52 (262)
267 1np6_A Molybdopterin-guanine d 96.7 0.0019 6.7E-08 53.7 5.7 41 117-157 3-43 (174)
268 3g5u_A MCG1178, multidrug resi 96.7 0.00048 1.6E-08 74.2 2.5 30 117-146 1056-1085(1284)
269 2zu0_C Probable ATP-dependent 96.7 0.00075 2.6E-08 60.1 3.4 27 117-143 43-69 (267)
270 1ihu_A Arsenical pump-driving 96.7 0.003 1E-07 62.4 8.0 53 106-159 313-366 (589)
271 1xjc_A MOBB protein homolog; s 96.7 0.002 6.8E-08 53.4 5.7 85 121-209 5-107 (169)
272 2jeo_A Uridine-cytidine kinase 96.7 0.0011 3.7E-08 58.0 4.0 43 116-158 21-68 (245)
273 2iut_A DNA translocase FTSK; n 96.7 0.0027 9.3E-08 62.3 7.1 39 120-158 214-256 (574)
274 3lnc_A Guanylate kinase, GMP k 96.7 0.00056 1.9E-08 59.1 1.9 28 117-144 24-52 (231)
275 2bbs_A Cystic fibrosis transme 96.7 0.00035 1.2E-08 63.1 0.6 29 117-145 61-89 (290)
276 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0026 9E-08 57.3 6.5 67 119-211 37-103 (324)
277 1cp2_A CP2, nitrogenase iron p 96.7 0.0021 7.3E-08 56.5 5.8 39 122-160 3-41 (269)
278 2ghi_A Transport protein; mult 96.7 0.00078 2.7E-08 59.7 2.9 29 116-144 42-70 (260)
279 2qor_A Guanylate kinase; phosp 96.7 0.0011 3.6E-08 56.2 3.6 28 117-144 9-36 (204)
280 3uk6_A RUVB-like 2; hexameric 96.6 0.0016 5.4E-08 60.0 5.0 40 115-155 65-104 (368)
281 2gno_A DNA polymerase III, gam 96.6 0.016 5.5E-07 52.4 11.6 72 120-211 18-95 (305)
282 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0077 2.6E-07 61.2 10.4 80 119-212 206-292 (758)
283 1nn5_A Similar to deoxythymidy 96.6 0.0024 8.4E-08 53.9 5.7 38 118-155 7-44 (215)
284 4eaq_A DTMP kinase, thymidylat 96.6 0.0023 8E-08 55.4 5.6 37 116-153 22-58 (229)
285 2r6f_A Excinuclease ABC subuni 96.6 0.0053 1.8E-07 63.7 9.0 25 117-141 647-671 (972)
286 2pjz_A Hypothetical protein ST 96.6 0.00056 1.9E-08 60.9 1.5 34 116-151 27-60 (263)
287 3fwy_A Light-independent proto 96.6 0.0022 7.4E-08 58.5 5.5 43 117-159 45-87 (314)
288 1p9r_A General secretion pathw 96.6 0.0017 5.7E-08 61.6 4.9 38 118-155 165-202 (418)
289 1kag_A SKI, shikimate kinase I 96.6 0.0012 4E-08 54.0 3.4 33 119-156 3-35 (173)
290 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0055 1.9E-07 62.3 9.0 81 121-211 489-570 (758)
291 1gvn_B Zeta; postsegregational 96.6 0.0021 7.1E-08 57.8 5.2 37 118-157 31-67 (287)
292 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00091 3.1E-08 64.3 2.9 40 117-156 135-175 (460)
293 1a5t_A Delta prime, HOLB; zinc 96.6 0.015 5E-07 53.2 10.9 86 120-211 24-121 (334)
294 2afh_E Nitrogenase iron protei 96.6 0.0027 9.1E-08 56.7 5.8 40 121-160 3-42 (289)
295 2axn_A 6-phosphofructo-2-kinas 96.6 0.01 3.6E-07 57.8 10.3 40 119-158 34-73 (520)
296 2bdt_A BH3686; alpha-beta prot 96.6 0.0011 3.9E-08 55.1 3.1 23 120-142 2-24 (189)
297 3cm0_A Adenylate kinase; ATP-b 96.6 0.0014 4.7E-08 54.2 3.5 27 118-144 2-28 (186)
298 1qhx_A CPT, protein (chloramph 96.5 0.0016 5.3E-08 53.5 3.8 25 120-144 3-27 (178)
299 4b3f_X DNA-binding protein smu 96.5 0.0015 5.1E-08 65.4 4.4 48 119-166 204-251 (646)
300 2qt1_A Nicotinamide riboside k 96.5 0.0015 5.2E-08 55.2 3.7 40 116-159 17-56 (207)
301 3a00_A Guanylate kinase, GMP k 96.5 0.0011 3.8E-08 55.3 2.8 26 120-145 1-26 (186)
302 2wwf_A Thymidilate kinase, put 96.5 0.0036 1.2E-07 52.7 5.9 40 116-155 6-45 (212)
303 2bjv_A PSP operon transcriptio 96.5 0.0016 5.6E-08 57.2 3.7 41 120-160 29-69 (265)
304 2vf7_A UVRA2, excinuclease ABC 96.4 0.0041 1.4E-07 63.9 6.8 122 117-255 520-791 (842)
305 1svm_A Large T antigen; AAA+ f 96.4 0.0025 8.6E-08 59.6 4.7 29 116-144 165-193 (377)
306 2pbr_A DTMP kinase, thymidylat 96.4 0.0039 1.3E-07 51.6 5.3 34 122-155 2-35 (195)
307 3kb2_A SPBC2 prophage-derived 96.4 0.0022 7.6E-08 52.0 3.7 24 121-144 2-25 (173)
308 2p5t_B PEZT; postsegregational 96.4 0.0017 5.7E-08 57.1 3.1 38 118-158 30-67 (253)
309 1a7j_A Phosphoribulokinase; tr 96.4 0.0024 8.2E-08 57.5 4.1 42 119-160 4-45 (290)
310 1y63_A LMAJ004144AAA protein; 96.4 0.0025 8.7E-08 52.9 4.0 37 117-157 7-43 (184)
311 2z0h_A DTMP kinase, thymidylat 96.3 0.0043 1.5E-07 51.6 5.4 34 122-155 2-35 (197)
312 3tqc_A Pantothenate kinase; bi 96.3 0.0031 1.1E-07 57.7 4.8 40 121-160 93-134 (321)
313 1ofh_A ATP-dependent HSL prote 96.3 0.0034 1.2E-07 56.0 5.0 36 120-158 50-85 (310)
314 2r2a_A Uncharacterized protein 96.3 0.0026 8.9E-08 54.1 4.0 124 120-260 5-136 (199)
315 2c95_A Adenylate kinase 1; tra 96.3 0.0026 8.9E-08 52.9 3.9 26 119-144 8-33 (196)
316 1ly1_A Polynucleotide kinase; 96.3 0.0022 7.6E-08 52.4 3.3 32 121-156 3-34 (181)
317 3ney_A 55 kDa erythrocyte memb 96.3 0.0026 8.8E-08 54.1 3.8 27 118-144 17-43 (197)
318 2bbw_A Adenylate kinase 4, AK4 96.3 0.0028 9.7E-08 55.1 4.0 26 119-144 26-51 (246)
319 3umf_A Adenylate kinase; rossm 96.3 0.0031 1E-07 54.4 4.1 37 115-156 24-60 (217)
320 3trf_A Shikimate kinase, SK; a 96.2 0.003 1E-07 52.2 3.8 26 119-144 4-29 (185)
321 3iij_A Coilin-interacting nucl 96.2 0.0029 1E-07 52.1 3.8 27 118-144 9-35 (180)
322 2vp4_A Deoxynucleoside kinase; 96.2 0.0021 7.2E-08 55.6 3.0 36 116-155 16-51 (230)
323 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0054 1.9E-07 57.3 6.0 42 118-159 33-74 (392)
324 1tev_A UMP-CMP kinase; ploop, 96.2 0.003 1E-07 52.3 3.7 25 120-144 3-27 (196)
325 1g3q_A MIND ATPase, cell divis 96.2 0.0049 1.7E-07 52.9 5.1 39 121-159 3-42 (237)
326 2oze_A ORF delta'; para, walke 96.2 0.005 1.7E-07 55.0 5.3 43 119-161 33-78 (298)
327 3lw7_A Adenylate kinase relate 96.2 0.0039 1.3E-07 50.4 4.2 20 121-140 2-21 (179)
328 2gza_A Type IV secretion syste 96.2 0.0016 5.4E-08 60.5 2.0 38 117-155 172-209 (361)
329 3t61_A Gluconokinase; PSI-biol 96.2 0.0031 1.1E-07 53.0 3.7 37 120-161 18-54 (202)
330 2ph1_A Nucleotide-binding prot 96.2 0.0061 2.1E-07 53.6 5.6 42 120-161 18-60 (262)
331 2i3b_A HCR-ntpase, human cance 96.2 0.0034 1.2E-07 52.8 3.8 26 120-145 1-26 (189)
332 3pxg_A Negative regulator of g 96.2 0.0052 1.8E-07 59.0 5.5 28 119-146 200-227 (468)
333 3cr8_A Sulfate adenylyltranfer 96.1 0.0027 9.2E-08 62.4 3.5 41 117-157 366-407 (552)
334 2ze6_A Isopentenyl transferase 96.1 0.0035 1.2E-07 55.1 3.7 24 121-144 2-25 (253)
335 1gtv_A TMK, thymidylate kinase 96.1 0.0022 7.4E-08 54.2 2.2 34 122-155 2-35 (214)
336 3cwq_A Para family chromosome 96.1 0.0066 2.2E-07 51.6 5.2 75 122-209 3-78 (209)
337 2vli_A Antibiotic resistance p 96.1 0.0031 1.1E-07 51.8 3.1 26 119-144 4-29 (183)
338 2r62_A Cell division protease 96.1 0.002 6.7E-08 56.7 1.9 72 122-212 46-117 (268)
339 1aky_A Adenylate kinase; ATP:A 96.1 0.0042 1.4E-07 53.0 4.0 33 119-156 3-35 (220)
340 3qxc_A Dethiobiotin synthetase 96.1 0.025 8.5E-07 49.5 9.0 36 120-155 21-57 (242)
341 1zd8_A GTP:AMP phosphotransfer 96.1 0.0039 1.3E-07 53.5 3.8 29 116-144 3-31 (227)
342 2v54_A DTMP kinase, thymidylat 96.1 0.0042 1.4E-07 52.0 3.9 36 118-155 2-37 (204)
343 4e22_A Cytidylate kinase; P-lo 96.0 0.0037 1.3E-07 54.9 3.6 27 118-144 25-51 (252)
344 1odf_A YGR205W, hypothetical 3 96.0 0.0035 1.2E-07 56.5 3.5 43 117-159 28-73 (290)
345 1in4_A RUVB, holliday junction 96.0 0.0036 1.2E-07 57.3 3.6 24 121-144 52-75 (334)
346 1uj2_A Uridine-cytidine kinase 96.0 0.0042 1.4E-07 54.3 3.9 40 121-160 23-67 (252)
347 2cdn_A Adenylate kinase; phosp 96.0 0.0048 1.6E-07 51.8 4.1 27 118-144 18-44 (201)
348 2bwj_A Adenylate kinase 5; pho 96.0 0.0048 1.6E-07 51.4 4.0 26 119-144 11-36 (199)
349 1u0j_A DNA replication protein 96.0 0.0068 2.3E-07 53.9 5.1 37 107-144 92-128 (267)
350 3kta_A Chromosome segregation 96.0 0.0047 1.6E-07 50.8 3.9 27 117-144 24-50 (182)
351 1cke_A CK, MSSA, protein (cyti 96.0 0.0051 1.7E-07 52.5 4.1 25 120-144 5-29 (227)
352 4edh_A DTMP kinase, thymidylat 96.0 0.008 2.7E-07 51.5 5.3 38 118-155 4-41 (213)
353 3upu_A ATP-dependent DNA helic 95.9 0.0048 1.7E-07 59.0 4.0 37 122-158 47-84 (459)
354 1um8_A ATP-dependent CLP prote 95.9 0.0055 1.9E-07 56.8 4.2 37 118-157 70-106 (376)
355 3be4_A Adenylate kinase; malar 95.8 0.0057 2E-07 52.2 3.8 27 118-144 3-29 (217)
356 1ojl_A Transcriptional regulat 95.8 0.0039 1.3E-07 56.4 2.8 42 119-160 24-65 (304)
357 1zak_A Adenylate kinase; ATP:A 95.8 0.0059 2E-07 52.1 3.8 26 119-144 4-29 (222)
358 1via_A Shikimate kinase; struc 95.8 0.005 1.7E-07 50.5 3.2 31 122-157 6-36 (175)
359 2iyv_A Shikimate kinase, SK; t 95.8 0.0051 1.8E-07 50.7 3.3 24 121-144 3-26 (184)
360 3sr0_A Adenylate kinase; phosp 95.8 0.006 2E-07 52.1 3.7 31 122-157 2-32 (206)
361 3k9g_A PF-32 protein; ssgcid, 95.8 0.0062 2.1E-07 53.5 3.9 41 119-160 26-67 (267)
362 3e1s_A Exodeoxyribonuclease V, 95.8 0.0073 2.5E-07 59.6 4.7 37 120-156 204-240 (574)
363 3v9p_A DTMP kinase, thymidylat 95.7 0.0094 3.2E-07 51.7 4.8 41 115-155 20-64 (227)
364 3hws_A ATP-dependent CLP prote 95.7 0.0069 2.4E-07 55.9 4.2 35 119-156 50-84 (363)
365 1qf9_A UMP/CMP kinase, protein 95.7 0.0071 2.4E-07 49.8 3.8 25 120-144 6-30 (194)
366 3tlx_A Adenylate kinase 2; str 95.7 0.0072 2.5E-07 52.7 4.0 27 118-144 27-53 (243)
367 3zvl_A Bifunctional polynucleo 95.7 0.01 3.4E-07 56.1 5.3 37 118-159 256-292 (416)
368 2jaq_A Deoxyguanosine kinase; 95.7 0.0071 2.4E-07 50.4 3.6 23 122-144 2-24 (205)
369 2f1r_A Molybdopterin-guanine d 95.6 0.0075 2.6E-07 49.9 3.6 30 121-150 3-32 (171)
370 3fb4_A Adenylate kinase; psych 95.6 0.0073 2.5E-07 51.1 3.7 23 122-144 2-24 (216)
371 1ukz_A Uridylate kinase; trans 95.6 0.0078 2.7E-07 50.4 3.8 26 119-144 14-39 (203)
372 3lv8_A DTMP kinase, thymidylat 95.6 0.015 5.3E-07 50.6 5.7 40 115-154 22-62 (236)
373 1bif_A 6-phosphofructo-2-kinas 95.6 0.038 1.3E-06 52.9 8.9 38 119-156 38-75 (469)
374 3foz_A TRNA delta(2)-isopenten 95.6 0.036 1.2E-06 50.3 8.1 34 119-157 9-42 (316)
375 3szr_A Interferon-induced GTP- 95.6 0.0013 4.4E-08 65.4 -1.5 22 123-144 48-69 (608)
376 2qmh_A HPR kinase/phosphorylas 95.6 0.007 2.4E-07 51.5 3.2 25 119-143 33-57 (205)
377 3m6a_A ATP-dependent protease 95.6 0.014 4.7E-07 57.2 5.7 26 119-144 107-132 (543)
378 2xj4_A MIPZ; replication, cell 95.5 0.011 3.6E-07 52.8 4.5 37 122-158 6-43 (286)
379 1jjv_A Dephospho-COA kinase; P 95.5 0.0069 2.3E-07 51.0 3.1 21 122-142 4-24 (206)
380 2if2_A Dephospho-COA kinase; a 95.5 0.008 2.7E-07 50.4 3.4 21 122-142 3-23 (204)
381 3con_A GTPase NRAS; structural 95.5 0.0087 3E-07 49.2 3.6 22 122-143 23-44 (190)
382 1kao_A RAP2A; GTP-binding prot 95.5 0.0076 2.6E-07 47.9 3.1 22 122-143 5-26 (167)
383 2qag_B Septin-6, protein NEDD5 95.5 0.0074 2.5E-07 57.3 3.5 28 116-143 36-65 (427)
384 1e6c_A Shikimate kinase; phosp 95.5 0.0077 2.6E-07 48.9 3.2 24 121-144 3-26 (173)
385 1zuh_A Shikimate kinase; alpha 95.5 0.0095 3.2E-07 48.3 3.7 25 120-144 7-31 (168)
386 3a8t_A Adenylate isopentenyltr 95.5 0.008 2.7E-07 55.2 3.5 36 118-158 38-73 (339)
387 1byi_A Dethiobiotin synthase; 95.5 0.015 5.1E-07 49.4 5.1 34 122-155 3-37 (224)
388 2rcn_A Probable GTPase ENGC; Y 95.4 0.011 3.6E-07 54.9 4.3 37 103-145 204-240 (358)
389 2oap_1 GSPE-2, type II secreti 95.4 0.0057 1.9E-07 59.5 2.5 37 118-155 258-294 (511)
390 3nwj_A ATSK2; P loop, shikimat 95.4 0.006 2.1E-07 53.7 2.4 29 116-144 41-72 (250)
391 3ld9_A DTMP kinase, thymidylat 95.4 0.013 4.4E-07 50.7 4.5 42 118-159 19-61 (223)
392 3dl0_A Adenylate kinase; phosp 95.4 0.0091 3.1E-07 50.6 3.5 23 122-144 2-24 (216)
393 2wsm_A Hydrogenase expression/ 95.4 0.017 5.6E-07 48.9 5.1 38 121-159 31-68 (221)
394 4tmk_A Protein (thymidylate ki 95.4 0.019 6.6E-07 49.1 5.5 35 119-153 2-37 (213)
395 3sfz_A APAF-1, apoptotic pepti 95.4 0.03 1E-06 59.3 8.2 101 106-208 134-246 (1249)
396 1ak2_A Adenylate kinase isoenz 95.4 0.012 4.1E-07 50.7 4.1 33 119-156 15-47 (233)
397 3d3q_A TRNA delta(2)-isopenten 95.4 0.013 4.5E-07 53.9 4.5 33 121-158 8-40 (340)
398 3pg5_A Uncharacterized protein 95.3 0.0086 2.9E-07 55.5 3.3 39 123-161 5-43 (361)
399 3sop_A Neuronal-specific septi 95.3 0.0094 3.2E-07 53.0 3.4 31 122-152 4-34 (270)
400 2dy1_A Elongation factor G; tr 95.3 0.028 9.6E-07 56.4 7.2 90 117-208 6-109 (665)
401 3eph_A TRNA isopentenyltransfe 95.3 0.046 1.6E-06 51.4 8.1 32 121-157 3-34 (409)
402 2yv5_A YJEQ protein; hydrolase 95.3 0.013 4.4E-07 52.9 4.2 43 103-152 154-196 (302)
403 3crm_A TRNA delta(2)-isopenten 95.3 0.013 4.3E-07 53.6 4.1 32 121-157 6-37 (323)
404 2pt5_A Shikimate kinase, SK; a 95.2 0.012 4.2E-07 47.5 3.6 23 122-144 2-24 (168)
405 1vt4_I APAF-1 related killer D 95.2 0.025 8.6E-07 59.4 6.6 44 119-162 149-195 (1221)
406 1ex7_A Guanylate kinase; subst 95.2 0.01 3.5E-07 49.8 3.1 23 122-144 3-25 (186)
407 2v6i_A RNA helicase; membrane, 95.2 0.065 2.2E-06 50.7 9.1 38 119-156 1-39 (431)
408 3euj_A Chromosome partition pr 95.2 0.0082 2.8E-07 57.9 2.7 33 117-150 27-59 (483)
409 1uf9_A TT1252 protein; P-loop, 95.2 0.013 4.5E-07 48.7 3.7 32 120-157 8-39 (203)
410 3r20_A Cytidylate kinase; stru 95.2 0.013 4.4E-07 51.0 3.7 25 120-144 9-33 (233)
411 1nij_A Hypothetical protein YJ 95.2 0.013 4.5E-07 53.2 3.9 34 120-155 4-37 (318)
412 3pxi_A Negative regulator of g 95.1 0.02 6.7E-07 58.3 5.5 29 118-146 199-227 (758)
413 1q3t_A Cytidylate kinase; nucl 95.1 0.015 5.2E-07 50.1 4.1 29 116-144 12-40 (236)
414 3q72_A GTP-binding protein RAD 95.1 0.0089 3E-07 47.8 2.4 19 123-141 5-23 (166)
415 1vht_A Dephospho-COA kinase; s 95.1 0.013 4.5E-07 49.7 3.6 24 119-142 3-26 (218)
416 1e9r_A Conjugal transfer prote 95.1 0.022 7.7E-07 53.7 5.6 40 120-159 53-92 (437)
417 2xb4_A Adenylate kinase; ATP-b 95.1 0.014 4.8E-07 50.0 3.6 23 122-144 2-24 (223)
418 2gk6_A Regulator of nonsense t 95.1 0.014 4.9E-07 58.0 4.1 41 120-160 195-236 (624)
419 2r44_A Uncharacterized protein 95.0 0.011 3.8E-07 53.6 3.0 34 120-156 46-79 (331)
420 2chq_A Replication factor C sm 95.0 0.017 5.9E-07 51.5 4.3 34 123-156 41-76 (319)
421 1z06_A RAS-related protein RAB 95.0 0.029 9.9E-07 46.0 5.4 22 122-143 22-43 (189)
422 1e4v_A Adenylate kinase; trans 95.0 0.016 5.6E-07 49.1 3.8 23 122-144 2-24 (214)
423 1pui_A ENGB, probable GTP-bind 95.0 0.007 2.4E-07 50.7 1.4 26 117-142 23-48 (210)
424 1lw7_A Transcriptional regulat 94.9 0.011 3.6E-07 54.8 2.6 32 115-146 163-196 (365)
425 1m8p_A Sulfate adenylyltransfe 94.9 0.019 6.6E-07 56.5 4.5 39 119-157 395-434 (573)
426 3k1j_A LON protease, ATP-depen 94.9 0.012 4.3E-07 58.2 3.1 38 118-155 58-95 (604)
427 1x6v_B Bifunctional 3'-phospho 94.9 0.027 9.1E-07 56.0 5.4 38 119-156 51-88 (630)
428 2gks_A Bifunctional SAT/APS ki 94.8 0.021 7.2E-07 55.9 4.5 38 120-157 372-409 (546)
429 3tqf_A HPR(Ser) kinase; transf 94.8 0.018 6.2E-07 47.8 3.4 24 119-142 15-38 (181)
430 1u0l_A Probable GTPase ENGC; p 94.8 0.0067 2.3E-07 54.7 0.7 34 118-151 167-200 (301)
431 3ake_A Cytidylate kinase; CMP 94.7 0.02 7E-07 47.8 3.7 31 122-157 4-34 (208)
432 4dcu_A GTP-binding protein ENG 94.7 0.029 9.9E-07 53.5 5.1 20 122-141 25-44 (456)
433 2hf9_A Probable hydrogenase ni 94.7 0.029 1E-06 47.5 4.6 37 121-158 39-75 (226)
434 1ltq_A Polynucleotide kinase; 94.6 0.018 6.2E-07 51.3 3.3 23 121-143 3-25 (301)
435 1t9h_A YLOQ, probable GTPase E 94.5 0.0052 1.8E-07 55.8 -0.6 35 117-151 170-204 (307)
436 3qf7_A RAD50; ABC-ATPase, ATPa 94.5 0.023 7.8E-07 52.7 3.8 27 117-144 21-47 (365)
437 1g8p_A Magnesium-chelatase 38 94.5 0.014 4.7E-07 53.0 2.2 23 122-144 47-69 (350)
438 3exa_A TRNA delta(2)-isopenten 94.5 0.022 7.6E-07 51.8 3.5 25 120-144 3-27 (322)
439 2grj_A Dephospho-COA kinase; T 94.5 0.024 8.2E-07 47.7 3.5 35 119-158 11-45 (192)
440 1tq4_A IIGP1, interferon-induc 94.5 0.013 4.5E-07 55.3 2.0 23 120-142 69-91 (413)
441 2iw3_A Elongation factor 3A; a 94.5 0.0056 1.9E-07 63.8 -0.6 35 117-151 696-730 (986)
442 3ez2_A Plasmid partition prote 94.4 0.029 9.8E-07 52.4 4.3 42 119-160 107-155 (398)
443 2iw3_A Elongation factor 3A; a 94.4 0.018 6E-07 60.1 3.0 26 117-142 458-483 (986)
444 1f2t_A RAD50 ABC-ATPase; DNA d 94.4 0.031 1.1E-06 44.9 3.9 24 121-144 24-47 (149)
445 2f6r_A COA synthase, bifunctio 94.4 0.025 8.4E-07 50.4 3.5 22 120-141 75-96 (281)
446 3ez9_A Para; DNA binding, wing 94.3 0.024 8.4E-07 53.0 3.6 42 119-160 110-158 (403)
447 2ga8_A Hypothetical 39.9 kDa p 94.3 0.028 9.4E-07 52.0 3.8 28 118-145 20-49 (359)
448 2xzl_A ATP-dependent helicase 94.3 0.027 9.1E-07 57.8 4.0 43 120-162 375-418 (802)
449 2wjy_A Regulator of nonsense t 94.2 0.029 9.9E-07 57.5 4.1 41 120-160 371-412 (800)
450 2gj8_A MNME, tRNA modification 94.2 0.029 9.8E-07 45.7 3.3 24 119-142 3-26 (172)
451 2ocp_A DGK, deoxyguanosine kin 94.1 0.034 1.2E-06 48.0 3.8 26 119-144 1-26 (241)
452 2xau_A PRE-mRNA-splicing facto 94.1 0.17 5.8E-06 51.6 9.4 38 118-155 107-147 (773)
453 3llm_A ATP-dependent RNA helic 94.1 0.062 2.1E-06 46.2 5.4 86 119-209 75-187 (235)
454 1oix_A RAS-related protein RAB 94.1 0.029 9.9E-07 46.5 3.2 23 122-144 31-53 (191)
455 3tmk_A Thymidylate kinase; pho 94.1 0.042 1.4E-06 47.1 4.3 29 118-146 3-31 (216)
456 1e69_A Chromosome segregation 94.1 0.029 1E-06 50.9 3.4 25 117-142 22-46 (322)
457 2f9l_A RAB11B, member RAS onco 93.9 0.031 1E-06 46.5 3.0 22 122-143 7-28 (199)
458 2c78_A Elongation factor TU-A; 93.9 0.074 2.5E-06 49.8 6.0 26 121-146 12-37 (405)
459 3hjn_A DTMP kinase, thymidylat 93.9 0.084 2.9E-06 44.4 5.8 35 122-156 2-36 (197)
460 4hlc_A DTMP kinase, thymidylat 93.9 0.057 1.9E-06 45.8 4.7 35 120-155 2-36 (205)
461 3fgn_A Dethiobiotin synthetase 93.9 0.18 6.2E-06 44.2 8.0 89 121-211 27-139 (251)
462 2o5v_A DNA replication and rep 93.9 0.038 1.3E-06 51.2 3.8 25 117-142 24-48 (359)
463 1w1w_A Structural maintenance 93.8 0.039 1.3E-06 52.1 3.9 27 117-143 23-49 (430)
464 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.025 8.7E-07 54.7 2.4 38 119-157 40-77 (500)
465 4aby_A DNA repair protein RECN 93.7 0.014 4.9E-07 54.6 0.7 28 116-144 57-84 (415)
466 1g41_A Heat shock protein HSLU 93.7 0.032 1.1E-06 53.1 3.0 31 122-155 52-82 (444)
467 2wji_A Ferrous iron transport 93.7 0.035 1.2E-06 44.6 2.9 21 122-142 5-25 (165)
468 3dkp_A Probable ATP-dependent 93.7 0.052 1.8E-06 46.7 4.1 44 107-156 59-106 (245)
469 1w36_D RECD, exodeoxyribonucle 93.5 0.072 2.5E-06 52.8 5.4 36 120-155 164-203 (608)
470 1g8f_A Sulfate adenylyltransfe 93.4 0.056 1.9E-06 52.4 4.3 40 119-158 394-435 (511)
471 2zej_A Dardarin, leucine-rich 93.4 0.033 1.1E-06 45.6 2.3 21 122-142 4-24 (184)
472 2hjg_A GTP-binding protein ENG 93.3 0.082 2.8E-06 50.0 5.2 20 122-141 5-24 (436)
473 1z2a_A RAS-related protein RAB 93.2 0.048 1.6E-06 43.3 2.9 22 122-143 7-28 (168)
474 3qks_A DNA double-strand break 93.2 0.061 2.1E-06 45.4 3.7 24 121-144 24-47 (203)
475 3lfu_A DNA helicase II; SF1 he 93.2 0.051 1.7E-06 53.8 3.6 40 120-159 22-65 (647)
476 2ce2_X GTPase HRAS; signaling 93.1 0.056 1.9E-06 42.5 3.2 22 122-143 5-26 (166)
477 2h92_A Cytidylate kinase; ross 93.1 0.054 1.8E-06 45.7 3.2 25 120-144 3-27 (219)
478 2dyk_A GTP-binding protein; GT 93.1 0.051 1.7E-06 42.8 2.9 22 122-143 3-24 (161)
479 2wjg_A FEOB, ferrous iron tran 93.0 0.051 1.7E-06 44.3 2.9 21 122-142 9-29 (188)
480 1p5z_B DCK, deoxycytidine kina 92.9 0.03 1E-06 49.1 1.4 27 118-144 22-48 (263)
481 2nzj_A GTP-binding protein REM 92.9 0.055 1.9E-06 43.3 2.9 21 122-142 6-26 (175)
482 1u8z_A RAS-related protein RAL 92.9 0.058 2E-06 42.6 2.9 22 122-143 6-27 (168)
483 3q85_A GTP-binding protein REM 92.8 0.059 2E-06 42.9 2.9 19 123-141 5-23 (169)
484 1g16_A RAS-related protein SEC 92.8 0.061 2.1E-06 42.7 3.0 20 123-142 6-25 (170)
485 2whx_A Serine protease/ntpase/ 92.8 0.34 1.2E-05 48.1 8.9 40 117-156 183-223 (618)
486 1r8s_A ADP-ribosylation factor 92.7 0.07 2.4E-06 42.2 3.3 21 123-143 3-23 (164)
487 3of5_A Dethiobiotin synthetase 92.7 0.13 4.3E-06 44.4 5.1 34 122-155 6-40 (228)
488 1ek0_A Protein (GTP-binding pr 92.7 0.066 2.3E-06 42.4 3.1 22 122-143 5-26 (170)
489 2erx_A GTP-binding protein DI- 92.7 0.061 2.1E-06 42.7 2.9 21 122-142 5-25 (172)
490 2ged_A SR-beta, signal recogni 92.7 0.066 2.3E-06 43.8 3.1 24 120-143 48-71 (193)
491 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.065 2.2E-06 43.0 2.9 22 122-143 9-30 (177)
492 1z08_A RAS-related protein RAB 92.6 0.07 2.4E-06 42.4 3.1 22 122-143 8-29 (170)
493 1c1y_A RAS-related protein RAP 92.5 0.068 2.3E-06 42.3 2.9 22 122-143 5-26 (167)
494 1ky3_A GTP-binding protein YPT 92.5 0.067 2.3E-06 43.0 2.9 22 122-143 10-31 (182)
495 1z0j_A RAB-22, RAS-related pro 92.5 0.072 2.5E-06 42.3 3.1 22 122-143 8-29 (170)
496 2va8_A SSO2462, SKI2-type heli 92.5 0.13 4.5E-06 51.6 5.6 93 116-211 42-158 (715)
497 1ni3_A YCHF GTPase, YCHF GTP-b 92.5 0.092 3.1E-06 49.2 4.1 28 115-142 15-42 (392)
498 2ygr_A Uvrabc system protein A 92.4 0.046 1.6E-06 57.0 2.1 25 117-141 665-689 (993)
499 3pih_A Uvrabc system protein A 92.4 0.063 2.2E-06 55.7 3.2 23 117-139 607-629 (916)
500 1r2q_A RAS-related protein RAB 92.4 0.077 2.6E-06 42.0 3.1 22 122-143 8-29 (170)
No 1
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=9.8e-40 Score=305.83 Aligned_cols=241 Identities=48% Similarity=0.723 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 63 IMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 63 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
..++.++|+.++.|+.+.|+++..+++.+.....+..++|||+++||.+||+||+++|++++|+||||+||||||++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 4 EKQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999998888776532223789999999999999889999999999999999999999999999
Q ss_pred HHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccC
Q 021239 143 EAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPING 222 (315)
Q Consensus 143 ~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~ 222 (315)
.++..+++|+|+++|+++.+.+++++|++++++.+.++.+.+++++.++.+++..++++|||||++.+++..++++.+++
T Consensus 84 ~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 84 EAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred HHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 99999999999999999999999999999999999999999999999999888889999999999999976778877777
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeee
Q 021239 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVN 302 (315)
Q Consensus 223 ~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~ 302 (315)
.+...+++.+++.++.|..++++++++||++||+++++ +.+|+ ++..++||++|.|++++||.++|.+++|+++++.
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~--g~~fg-~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~ 240 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKI--GVMFG-SPETTTGGLALKFYATMRMEVRRGEPIKEGKDVI 240 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCS--SSSSC-SCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecc--ccccC-CcccCCCcchhhhhCcEEEEEEeccccccCCccc
Confidence 77778889999999999999999999999999999888 56787 8889999999999999999999998889998888
Q ss_pred ccce
Q 021239 303 ILEV 306 (315)
Q Consensus 303 g~~~ 306 (315)
|+.+
T Consensus 241 g~~~ 244 (356)
T 3hr8_A 241 GNVI 244 (356)
T ss_dssp EEEE
T ss_pred ccEE
Confidence 8653
No 2
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=100.00 E-value=2.4e-40 Score=302.32 Aligned_cols=204 Identities=21% Similarity=0.335 Sum_probs=153.9
Q ss_pred CCCccccCcHHHHHhhc---CCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCChHHHHHcCCC
Q 021239 97 RGPVISTGSLKLDLALG---IGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~---~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~~~~~~~g~~ 171 (315)
..+++|||+++||.+|| +||+++| +++|+||||+||||||++++.++++. |++|+||++|+++.+.+++++|++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD 81 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence 45789999999999998 4899999 99999999999999999999999986 899999999999999999999999
Q ss_pred CCCeEEeCCCCHHHH-HHHHHHH--HHcCCccEEeehhHhhhccccccCCCccCCChH--HHHHHHHHHHHHHHHHHhcc
Q 021239 172 AENLLIAQPDSAENL-LSVVDTL--TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSD--AQSRIMTQALRKIHYSLCQS 246 (315)
Q Consensus 172 ~~~l~i~~~~~~e~~-~~~i~~l--~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~--~q~r~i~~~l~~L~~~~~~~ 246 (315)
.+++++.++.+.+++ ++.++.+ +++..+++|||||+++++++.++++++++.+.+ .|+|.+++.|++|.++++++
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 8877776 677889999999999999777888777655444 68889999999999999999
Q ss_pred CcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeecccee
Q 021239 247 HTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNILEVV 307 (315)
Q Consensus 247 ~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g~~~~ 307 (315)
|++||+|||++. + +.+|| +++ ++||+++ |++++||.++|.+++|++++++|++++
T Consensus 162 ~i~vi~tNQV~k-~--G~~fg-~p~-~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~ 216 (333)
T 3io5_A 162 NIPCIAINHTYE-T--QEMFS-KTV-MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFV 216 (333)
T ss_dssp TCEEEEEEEC--------------------CCG-GGGSSEEEEEEEC----------CEEE
T ss_pred CCEEEEECCeee-c--CcccC-CCC-CCCccee-eeeeEEEEEEeccccccCCccEEeEEE
Confidence 999999999987 6 56897 555 4999999 999999999999999999999999964
No 3
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=1.6e-38 Score=344.96 Aligned_cols=240 Identities=51% Similarity=0.733 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++.++++.++.|+++.||++..|++.+. ...+.+.||||+..||.+||+||+|+|.+++|+||.++|||||+++.+++
T Consensus 1720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~ 1798 (2050)
T 3cmu_A 1720 ENKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1798 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcceEECCCC-cccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 36888999999999999999999999873 24578999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
+++.|+.|+|||.|+..++.+++.+|++.+++++.+|++.|+.++++..+++.+.+++|||||++++.|+.+++++.|+.
T Consensus 1799 ~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~ 1878 (2050)
T 3cmu_A 1799 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 1878 (2050)
T ss_dssp HHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC------
T ss_pred HhhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
+.+.|+|.|++.||+|.....+.++++|++||++.++ |.+|| +|+.+.||+++.||+++|+.++|.+.+|++++++|
T Consensus 1879 ~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~--~~~~~-~~~~~~gg~~~~~~~~~r~~~~~~~~~~~~~~~~~ 1955 (2050)
T 3cmu_A 1879 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1955 (2050)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC-----------CCCCCSSHHHHHHHEEEEEEEEEEEEEEETTEEEE
T ss_pred chhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHh--ccccC-CCCCcCCcchhheeeeeeeeeeeecccccCCeeee
Confidence 9999999999999999999999999999999999999 78999 89999999999999999999999999999999999
Q ss_pred ccee
Q 021239 304 LEVV 307 (315)
Q Consensus 304 ~~~~ 307 (315)
|+++
T Consensus 1956 ~~~~ 1959 (2050)
T 3cmu_A 1956 SETR 1959 (2050)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9985
No 4
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=4e-38 Score=339.00 Aligned_cols=240 Identities=51% Similarity=0.730 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
+++.+.+..++.|+++.||++..+++..-. ....+.||||+..||.+||+||+|+|.+++|+||+|+|||||+++++++
T Consensus 1376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~ 1454 (1706)
T 3cmw_A 1376 ENKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1454 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCG-GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCccEEECCCCC-CCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467888899999999999999988776522 3568999999999999999889999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
++++|+.|+||+.|++.++.+++.+|+|++++++.+|++.|+.+++++.+++++.+++|||||++++.++.+.+++.|+.
T Consensus 1455 ~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~ 1534 (1706)
T 3cmw_A 1455 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 1534 (1706)
T ss_dssp HHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC------
T ss_pred HHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
+.+.|+|.|++.|++|...+++.++++|+|||++.++ |.+|| +|+.++||+++.||+++|+.++|.+.+|++++++|
T Consensus 1535 ~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~--~~~~~-~~~~~~~g~al~~~~~~r~~~~~~~~~~~~~~~~~ 1611 (1706)
T 3cmw_A 1535 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1611 (1706)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC-----------CCCCBSSCSHHHHHEEEEEEEEEEEEEEETTEEEE
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccc--ceecC-CCccccCcceeeeeeeeeeeeeeccccccCCeeEe
Confidence 9999999999999999999999999999999999999 78999 89999999999999999999999999999999999
Q ss_pred ccee
Q 021239 304 LEVV 307 (315)
Q Consensus 304 ~~~~ 307 (315)
|+++
T Consensus 1612 ~~~~ 1615 (1706)
T 3cmw_A 1612 SETR 1615 (1706)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9985
No 5
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=100.00 E-value=4.1e-37 Score=288.83 Aligned_cols=238 Identities=51% Similarity=0.739 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++.++++.+++||++.|+++..+++.+.. ......+|||++.||.+|++||+++|++++|+|+||+||||||++++.+
T Consensus 8 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 8 ENKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp --CHHHHHHHHHHHHHHHCTTSSCCTTCCC-BCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCCceEccccc-cccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999887776642 3568899999999999997689999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
++..|++|+||++|+++++.+++++|++.+++.+.++.+.+++.+.++.+++..++++|||||++.+.+..+++++.++.
T Consensus 87 ~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~ 166 (356)
T 1u94_A 87 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 166 (356)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred HHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccc
Confidence 99999999999999999999999999999999999999999999999888888899999999999998544554433333
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
....+.+.+.+.+++|..++++++++||++||++..+ +.+|+ ++..|.||++|.|++++|+.++|.+..|+++.+.|
T Consensus 167 ~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~--~~~fg-~~~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g 243 (356)
T 1u94_A 167 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 243 (356)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc--CcccC-CCcccCCCcceeeeccEEEEEEEeeeeccCccccC
Confidence 3335667789999999999999999999999999887 45676 67889999999999999999999987777766656
Q ss_pred cc
Q 021239 304 LE 305 (315)
Q Consensus 304 ~~ 305 (315)
++
T Consensus 244 ~~ 245 (356)
T 1u94_A 244 SE 245 (356)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 6
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=100.00 E-value=6.9e-37 Score=286.88 Aligned_cols=239 Identities=45% Similarity=0.727 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++.++++.+++++++.|+++..+++.+.. ......++||+++||.+|++||+++|++++|+|+||+||||||++++.+
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 6 PDREKALELAMAQIDKNFGKGSVMRLGEEV-RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSSCCTTCCC-CCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCceeccccc-cccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 367789999999999999999887776642 3567899999999999997789999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
++..|++|+|+++|+++.+.+++++|++.+++.+.++.+.+++++.++.++...++++|||||++.+.+..+++++.++.
T Consensus 85 ~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 85 AQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred HHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 99999999999999999999999999999999999999999999999888888889999999999998555555544443
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
..+.+++.+.+.+++|...++++|++||++||++.++ +.+|+ ++..|.||.+|.|++++|+.++|.+..|++....|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~--~~~~~-~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g 241 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKI--GVMFG-SPETTTGGKALKFYASVRLDVRRIETLKDGTDAVG 241 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc--CcccC-CCcccCCchHhhhccceEEEEEEeeeeecCccccC
Confidence 3335667788999999999999999999999999887 44676 67889999999999999999999988787776666
Q ss_pred cce
Q 021239 304 LEV 306 (315)
Q Consensus 304 ~~~ 306 (315)
++.
T Consensus 242 ~~~ 244 (349)
T 2zr9_A 242 NRT 244 (349)
T ss_dssp EEE
T ss_pred CEE
Confidence 543
No 7
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=100.00 E-value=9.1e-37 Score=287.34 Aligned_cols=239 Identities=46% Similarity=0.725 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 63 IMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 63 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
.+++.+.++.++++|++.|+++..+++.+.. ......+|||+++||.+|++||+++|++++|+|+||+|||+||++++.
T Consensus 18 ~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 18 AKERSKAIETAMSQIEKAFGKGSIMKLGAES-KLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTSSCCTTSCC-CCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeccccc-cccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3468889999999999999998777766532 356789999999999999778999999999999999999999999999
Q ss_pred HHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccC
Q 021239 143 EAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPING 222 (315)
Q Consensus 143 ~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~ 222 (315)
+++..|++|+||++|+++.+.+++++|++.+++++.++.+.+++++.++.+++..++++|||||++.+.++.+++++.++
T Consensus 97 ~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd 176 (366)
T 1xp8_A 97 QAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGD 176 (366)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC------
T ss_pred HHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999888889999999999999854555443333
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc-ccccCee
Q 021239 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL-FKIADKV 301 (315)
Q Consensus 223 ~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~-~k~~~~~ 301 (315)
.....+.+.+.+.+++|..++++++++||++||++..+ +.+|+ ++..|.||.+|.|++++|+.++|.+. .|+++++
T Consensus 177 ~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~--~~~fg-~p~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~ 253 (366)
T 1xp8_A 177 SLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI--GVMYG-NPETTTGGRALKFYASVRLDVRKIGQPTKVGNDA 253 (366)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC------------------CHHHHHHHCSEEEEEEEESCCC------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccccc--CcccC-CccccCCcchhhheeeEEEEEEecchhcccCccc
Confidence 22235667789999999999999999999999999888 44676 67889999999999999999999987 6776666
Q ss_pred eccc
Q 021239 302 NILE 305 (315)
Q Consensus 302 ~g~~ 305 (315)
.|+.
T Consensus 254 ~g~~ 257 (366)
T 1xp8_A 254 VANT 257 (366)
T ss_dssp CEEE
T ss_pred cCCE
Confidence 6653
No 8
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=2.3e-33 Score=304.75 Aligned_cols=240 Identities=51% Similarity=0.733 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++.++++.++.++.+.|++...+++.+. .....+.+|||+++||.+||+||+++|+.++|+||||+|||+||.+++.+
T Consensus 1372 ~~~~~~~~~~~~~~~~~~~~~si~~~~~~-~~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1372 ENKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcceeecccc-cccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999988877664 23567899999999999999899999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
++.+|++|+||++|+.+.+.+++.+|++++++.+.++++.+++.+.+++++++..+++||||+++++.+..+.+++.++.
T Consensus 1451 a~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~ 1530 (2050)
T 3cmu_A 1451 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 1530 (2050)
T ss_dssp HHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCC
T ss_pred HHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765554444544
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
....+.|.+++.|++|...+++.+++||++||....+ +.+|| +++.++||++|.|++++||.++|.+.+|++++++|
T Consensus 1531 ~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~~~--g~~fg-~~~~t~gg~al~~~~s~rl~~~~~~~~k~~~~~~g 1607 (2050)
T 3cmu_A 1531 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1607 (2050)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEECT--TCCSS-CCEEESSHHHHHHHEEEEEEEEEEEEEEETTEEEE
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCcEEEEEccccccc--hhhcC-CCcccCCCceeeeeeeEEEEeeccccccccccccc
Confidence 4445778889999999999999999999999999999 66898 88999999999999999999999999999999999
Q ss_pred ccee
Q 021239 304 LEVV 307 (315)
Q Consensus 304 ~~~~ 307 (315)
++++
T Consensus 1608 ~~~~ 1611 (2050)
T 3cmu_A 1608 SETR 1611 (2050)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 9875
No 9
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=9.5e-33 Score=297.42 Aligned_cols=238 Identities=51% Similarity=0.739 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++...++.+++++++.|+++..+++.+.. ......+|||+++||.+|++||+++|++++|+|+||+|||+||++++.+
T Consensus 328 ~~~~~~l~~a~~~i~~~fg~~~~~~l~~~~-~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 328 ENKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCG-GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCCcceeccccc-cccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 456778999999999999999888776632 2467899999999999997789999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 144 ~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
+++.|++|+||++|++.++.+++.+|++.+++.+.++++.+++.+.++.++++.++++|||||++.+++..++++..++.
T Consensus 407 ~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~ 486 (1706)
T 3cmw_A 407 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 486 (1706)
T ss_dssp HHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCC
T ss_pred HHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999998888999999999999998655555555554
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecccccccCeeec
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRLFKIADKVNI 303 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~~k~~~~~~g 303 (315)
+.+.+.+.+.+.++.|+.+++++||+||++||+++.+ +.+|+ ++++|+||.+|.|++|+|+.+.|.+..++++...|
T Consensus 487 ~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~v--g~~fg-~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~ 563 (1706)
T 3cmw_A 487 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 563 (1706)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECT--TCCSS-CCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEE
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccc--ccccC-CCccCCCCcceeeeCCEEEEEEeccccccCccccC
Confidence 4556778899999999999999999999999999988 45787 67899999999999999999999987666665555
Q ss_pred cc
Q 021239 304 LE 305 (315)
Q Consensus 304 ~~ 305 (315)
++
T Consensus 564 ~~ 565 (1706)
T 3cmw_A 564 SE 565 (1706)
T ss_dssp EE
T ss_pred cE
Confidence 44
No 10
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.97 E-value=1.3e-30 Score=242.03 Aligned_cols=222 Identities=23% Similarity=0.322 Sum_probs=142.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHH
Q 021239 60 DAKIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALH 139 (315)
Q Consensus 60 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~ 139 (315)
+.+..+..+.++.+.+++.+.|.++..+... ..+...++||++.||.+|+ ||+++|++++|+|+||+|||+||++
T Consensus 52 g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~ 126 (324)
T 2z43_A 52 GIPLSTAQKIIKEARDALDIRFKTALEVKKE----RMNVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQ 126 (324)
T ss_dssp --------------------CCCCHHHHHHH----HCSCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhcccCccchhhhhhh----hccCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHH
Confidence 3444445555666666777777776654322 1457899999999999999 9999999999999999999999999
Q ss_pred HHHHHHhc------CCeEEEEecCCCCChH----HHHHcCCCCC----CeEEeCCCCHHH---HHHHHHHHHHc-CCccE
Q 021239 140 VIKEAQKL------GGYCAYLDVENALDPS----LAEAMGIDAE----NLLIAQPDSAEN---LLSVVDTLTKS-GSIDV 201 (315)
Q Consensus 140 la~~~~~~------g~~v~~i~~E~~~~~~----~~~~~g~~~~----~l~i~~~~~~e~---~~~~i~~l~~~-~~~~l 201 (315)
++.+++.. +++|+||++|++++.. +++++|++.+ ++++.++.+.++ +++.+..++++ .++++
T Consensus 127 la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 206 (324)
T 2z43_A 127 LSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKL 206 (324)
T ss_dssp HHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCE
Confidence 99998765 7899999999997653 6777888874 788888887775 45556666766 78999
Q ss_pred EeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcccccccccccc
Q 021239 202 IVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKF 281 (315)
Q Consensus 202 VVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~ 281 (315)
|||||++.++. .++.+. ++ .......+.+.++.|.+++++++++||++||++...+ .+|+ ++..|+||.+|.|
T Consensus 207 vVIDsl~~l~~-~~~~~~-g~--~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~--~~~~-~~~~~~gg~~l~~ 279 (324)
T 2z43_A 207 IVVDSVTSHFR-AEYPGR-EN--LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPD--MFYG-DPTVAVGGHTLYH 279 (324)
T ss_dssp EEETTTTHHHH-HHSCTT-TS--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-------------------------
T ss_pred EEEeCcHHHhh-hhhcCc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCC--CcCC-CCCCCCchHHHHh
Confidence 99999999983 333321 11 1122234778889999999999999999999998873 3565 6778999999999
Q ss_pred ccceEEEEEecc
Q 021239 282 YAALRLRMMRTR 293 (315)
Q Consensus 282 ~~~~rl~l~k~~ 293 (315)
++++||.++|.+
T Consensus 280 ~~d~~l~l~r~~ 291 (324)
T 2z43_A 280 VPGIRIQLKKSR 291 (324)
T ss_dssp --CEEEEEEECS
T ss_pred hCcEEEEEEEcC
Confidence 999999999875
No 11
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.97 E-value=8.5e-31 Score=245.22 Aligned_cols=224 Identities=23% Similarity=0.317 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHH
Q 021239 61 AKIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHV 140 (315)
Q Consensus 61 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~l 140 (315)
.+..+..+.++.+.+++.+.|.++..+.-.. .+...++||++.||.+|+ ||+++|++++|+|+||+|||+||+++
T Consensus 68 is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 68 LSEAKVDKIKEAANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp ------------------CCSEEHHHHHHHG----GGCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccCCCcHHHHHhhh----cccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3334444555556666666666655432211 346789999999999999 99999999999999999999999999
Q ss_pred HHHHHh------cCCeEEEEecCCCCChH----HHHHcCCCC----CCeEEeCCCCHHHHH---HHHHHHHHc--CCccE
Q 021239 141 IKEAQK------LGGYCAYLDVENALDPS----LAEAMGIDA----ENLLIAQPDSAENLL---SVVDTLTKS--GSIDV 201 (315)
Q Consensus 141 a~~~~~------~g~~v~~i~~E~~~~~~----~~~~~g~~~----~~l~i~~~~~~e~~~---~~i~~l~~~--~~~~l 201 (315)
+.+++. .+++|+||++|+++... +++++|++. +++++.++.+.+++. ..+..++.+ .++++
T Consensus 143 a~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~l 222 (343)
T 1v5w_A 143 CVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 222 (343)
T ss_dssp HHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEE
T ss_pred HHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccE
Confidence 998765 57899999999987764 677888887 478888777666544 445666766 78999
Q ss_pred EeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcccccccccccc
Q 021239 202 IVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKF 281 (315)
Q Consensus 202 VVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~ 281 (315)
|||||++.++. .++.+. ++ .......+.+.++.|.++++++|++||++||+++......+|.+++.+|+||++|.|
T Consensus 223 vVIDsl~~l~~-~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~ 298 (343)
T 1v5w_A 223 LIIDSIMALFR-VDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAH 298 (343)
T ss_dssp EEEETSGGGHH-HHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTT
T ss_pred EEEechHHHHH-HHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHH
Confidence 99999999983 343321 11 111223477888899999999999999999999887543356226778999999999
Q ss_pred ccceEEEEEecc
Q 021239 282 YAALRLRMMRTR 293 (315)
Q Consensus 282 ~~~~rl~l~k~~ 293 (315)
++++||.++|.+
T Consensus 299 ~ad~~l~l~r~~ 310 (343)
T 1v5w_A 299 ASTTRISLRKGR 310 (343)
T ss_dssp SSSEEEEEEESS
T ss_pred hCCEEEEEEEcC
Confidence 999999999874
No 12
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.97 E-value=5.7e-30 Score=237.34 Aligned_cols=222 Identities=22% Similarity=0.275 Sum_probs=169.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHH
Q 021239 60 DAKIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALH 139 (315)
Q Consensus 60 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~ 139 (315)
+++..+..+.++.+.+++...|.++..+... ......++||++.||.+|+ ||+++|++++|+|+||+|||+||++
T Consensus 43 gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 43 GISEKAAAKMIMGARDLCDLGFKSGIDLLKQ----RSTVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSCCCTHHHHHH----HTTCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhhhcCCcHHHHHHH----hccCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHH
Confidence 3455555666666777777777776654221 1457899999999999999 9999999999999999999999999
Q ss_pred HHHHHHh------------cC----CeEEEEecCCCCChH----HHHHcCCCC----CCeEEeCCCCHHH---HHHHHHH
Q 021239 140 VIKEAQK------------LG----GYCAYLDVENALDPS----LAEAMGIDA----ENLLIAQPDSAEN---LLSVVDT 192 (315)
Q Consensus 140 la~~~~~------------~g----~~v~~i~~E~~~~~~----~~~~~g~~~----~~l~i~~~~~~e~---~~~~i~~ 192 (315)
++.+++. .| ++|+||++|++++.. +++++|++. +++++.++.+.++ +++.+..
T Consensus 118 la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~ 197 (322)
T 2i1q_A 118 SCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIED 197 (322)
T ss_dssp HHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHH
T ss_pred HHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHH
Confidence 9988642 24 799999999997654 677889887 4788888888775 4455666
Q ss_pred HHHc-CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcc
Q 021239 193 LTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDE 271 (315)
Q Consensus 193 l~~~-~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~ 271 (315)
.+++ .++++|||||++.++. .++.+. + ........+.+.++.|.+++++++++||++||++...+ .+|+ ++.
T Consensus 198 ~~~~~~~~~lvVIDsl~~l~~-~~~~~~-~--~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~--~~~g-~~~ 270 (322)
T 2i1q_A 198 LIQEGNNIKLVVIDSLTSTFR-NEYTGR-G--KLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPD--AFFG-MAE 270 (322)
T ss_dssp HHHTTCEEEEEEEECSSHHHH-HHCCCT-T--SHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC----------CC
T ss_pred HHhhccCccEEEEECcHHHHH-HHhcCC-c--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCC--CCCC-CCc
Confidence 6776 7899999999999983 333321 1 11122234778899999999999999999999998873 3565 677
Q ss_pred ccccccccccccceEEEEEecc
Q 021239 272 VTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 272 ~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.|.||..|.|++++||.++|.+
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~~~ 292 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRKGK 292 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEECS
T ss_pred CCCCcHHHHhcCcEEEEEEecC
Confidence 8999999999999999999875
No 13
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.95 E-value=1.3e-27 Score=227.27 Aligned_cols=192 Identities=26% Similarity=0.408 Sum_probs=136.9
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCChH----HHH
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LAE 166 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~~----~~~ 166 (315)
...+++||+++||++|+ ||+++|++++|+||||+|||||+++++.+++. .+++++||++|+.+... +++
T Consensus 156 ~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~ 234 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 234 (400)
T ss_dssp TSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence 56889999999999999 99999999999999999999999999887764 36789999999987763 567
Q ss_pred HcCCCCC----CeEEeCCCCHHHHH---HHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHH
Q 021239 167 AMGIDAE----NLLIAQPDSAENLL---SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (315)
Q Consensus 167 ~~g~~~~----~l~i~~~~~~e~~~---~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L 239 (315)
++|++++ ++.+....+.++.. ..+...+...++++||||+++.+++ .++.+. + ....+.+.+.++++.|
T Consensus 235 ~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g--~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 235 RFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-G--ELSARQMHLAKFMRAL 310 (400)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------C--CHHHHHHHHHHHHHHH
T ss_pred HcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-c--chHHHHHHHHHHHHHH
Confidence 7898875 77887777766544 3344555667899999999999984 344321 1 1122334456778888
Q ss_pred HHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 240 HYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 240 ~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.++++++|++||++||++...++..+|++++.+|+||..|.|++++||.|++.+
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 888899999999999998776543346557788999999999999999999964
No 14
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.94 E-value=4.5e-26 Score=213.55 Aligned_cols=218 Identities=23% Similarity=0.284 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHH-hhCcccccccccccCCCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 64 MQKDNALRLALSQLAN-DFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 64 ~~~~~~l~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
.+..+.++.+.+++.+ .|.++..+.-. ......+|||+++||.+|+ ||+++|++++|+||||+|||||+++++.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 79 GTALKIIQAARKAANLGTFMRADEYLKK----RATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEHHHHHHH----HHTCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccCCccHHHHHhh----hccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444445555544 44444332111 1356889999999999999 9999999999999999999999999999
Q ss_pred HHHhc------CCeEEEEecCCCCChH----HHHHcCCCC----CCeEEeCCCCH---HHHHHHHHHHHHc-----CCcc
Q 021239 143 EAQKL------GGYCAYLDVENALDPS----LAEAMGIDA----ENLLIAQPDSA---ENLLSVVDTLTKS-----GSID 200 (315)
Q Consensus 143 ~~~~~------g~~v~~i~~E~~~~~~----~~~~~g~~~----~~l~i~~~~~~---e~~~~~i~~l~~~-----~~~~ 200 (315)
.++.. +++|+||++|+.+... +++..+++. +++.+....+. .++++.+..++.. .+++
T Consensus 154 ~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~ 233 (349)
T 1pzn_A 154 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVK 233 (349)
T ss_dssp HTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEE
T ss_pred HhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCC
Confidence 87532 4789999999986543 455566654 46766665443 3456666677766 6899
Q ss_pred EEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccc
Q 021239 201 VIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALK 280 (315)
Q Consensus 201 lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~ 280 (315)
+|||||+++.+. .++.+.. ........+.+.++.|.++++++|++||++||.....+ .+|+ ++..+.||+.|.
T Consensus 234 llIlDs~ta~ld-~~~~~~~---~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~--~~~~-~~~~~~~G~~l~ 306 (349)
T 1pzn_A 234 LLIVDSLTSHFR-SEYIGRG---ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD--AFFG-DPTRPIGGHILA 306 (349)
T ss_dssp EEEEETSSTTHH-HHCCSTT---THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC------------------CCCCC
T ss_pred EEEEeCchHhhh-hhhcccc---cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc--cccC-CccccCCcceEe
Confidence 999999999883 3332210 11112223567777888888999999999999987663 3455 678899999999
Q ss_pred cccceEEEEEecc
Q 021239 281 FYAALRLRMMRTR 293 (315)
Q Consensus 281 ~~~~~rl~l~k~~ 293 (315)
|+++.||.++|.+
T Consensus 307 ~~~~~rL~l~~~~ 319 (349)
T 1pzn_A 307 HSATLRVYLRKGK 319 (349)
T ss_dssp TTCSEEEEEEECT
T ss_pred ecCcEEEEEEEcC
Confidence 9999999999864
No 15
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.94 E-value=9.2e-26 Score=199.37 Aligned_cols=192 Identities=23% Similarity=0.309 Sum_probs=129.1
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCCh----HHHH
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDP----SLAE 166 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~----~~~~ 166 (315)
+.+.++||++.||++|+ ||+++|++++|+||||+|||||+.+++.+++. .+++++|+++|+.+.. .+++
T Consensus 2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 45789999999999999 99999999999999999999999999987654 3689999999997654 2567
Q ss_pred HcCCCC----CCeEEeCCCCHHHHHHH---HHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHH
Q 021239 167 AMGIDA----ENLLIAQPDSAENLLSV---VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (315)
Q Consensus 167 ~~g~~~----~~l~i~~~~~~e~~~~~---i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L 239 (315)
.+|+++ +++.+..+.+.++.... +...+...++++||||+++.+.. ..+.+.. ....+.+.+.+.+..|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~~---~~~~r~~~~~~~~~~l 156 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGRG---ELSARQMHLARFLRML 156 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCCc---cHHHHHHHHHHHHHHH
Confidence 788887 67877777776655443 55556667899999999998873 2222110 0012222356677777
Q ss_pred HHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 240 HYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 240 ~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.++++++|++||+++|..+.......|.+++..|+||..|.+.++.++.+.+.+
T Consensus 157 ~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 157 LRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp HHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred HHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 777899999999999998876432234335677899999999999999999853
No 16
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.92 E-value=5.6e-25 Score=194.87 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=130.8
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCCh--HHHHHcCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDP--SLAEAMGIDA 172 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~--~~~~~~g~~~ 172 (315)
.+.++||||+++||++|+ ||+++|++++|+|+||+|||+||++++.+++. .+.+|+|+++|++... .++.+++.+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~ 85 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF 85 (251)
T ss_dssp -CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred CCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCCh
Confidence 467899999999999999 99999999999999999999999999988654 5789999999998776 3455555442
Q ss_pred C------CeEE------------------eCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHH
Q 021239 173 E------NLLI------------------AQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (315)
Q Consensus 173 ~------~l~i------------------~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q 228 (315)
+ ++.+ ......+++.+.+...+...+++++|||+++.+.... ... .
T Consensus 86 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~--~~~-------~- 155 (251)
T 2zts_A 86 EKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EEE-------R- 155 (251)
T ss_dssp HHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SSG-------G-
T ss_pred HHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc--cCh-------H-
Confidence 2 1211 1223556778888888888999999999999887321 111 1
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 229 ~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.+.+.++.|+.+++++|+++++++|+.+...+ ...+...+.+.+|..+.+.+..
T Consensus 156 --~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~---------~~~~~~~~~~~aD~vi~l~~~~ 209 (251)
T 2zts_A 156 --KIREVLLKLNTILLEMGVTTILTTEAPDPQHG---------KLSRYGIEEFIARGVIVLDLQE 209 (251)
T ss_dssp --GHHHHHHHHHHHHHHHCCEEEEEECCC----C---------CSSSSSCGGGGCSEEEEEEEEE
T ss_pred --HHHHHHHHHHHHHHHcCCCeEEEEEEeccccc---------ccccCCceeEEeeEEEEEEEEe
Confidence 13456677788889999999999999755421 2334456788889888887654
No 17
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.92 E-value=1e-23 Score=194.95 Aligned_cols=187 Identities=18% Similarity=0.158 Sum_probs=141.9
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH--HHH--HcCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--LAE--AMGIDA 172 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~--~~~--~~g~~~ 172 (315)
...+++||+++||.++| |+++|++++|+|+||+|||+|+++++.+++.+|.+|+||++|++..+. |+. ..+++.
T Consensus 47 ~~~~i~TG~~~LD~~lg--Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~ 124 (315)
T 3bh0_A 47 NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINA 124 (315)
T ss_dssp SCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCH
T ss_pred CCCCccCChHHHHhhcC--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 45789999999999995 999999999999999999999999999999888999999999987762 222 124431
Q ss_pred ---------------------------CCeEEeCC--CCHHHHHHHHHHHHHcCCcc--EEeehhHhhhccccccCCCcc
Q 021239 173 ---------------------------ENLLIAQP--DSAENLLSVVDTLTKSGSID--VIVVDSVAALIPKCEIGVPIN 221 (315)
Q Consensus 173 ---------------------------~~l~i~~~--~~~e~~~~~i~~l~~~~~~~--lVVIDsl~~l~~~~~~~~~~~ 221 (315)
.++++.+. .+.+++...+++++++++++ +|||||++.+... . ..
T Consensus 125 ~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~-~-~~--- 199 (315)
T 3bh0_A 125 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-K-AN--- 199 (315)
T ss_dssp HHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS-C-TT---
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC-C-CC---
Confidence 14555554 36889999999988888899 9999999998731 1 00
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 222 ~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
. .....+..+++.|+.+|+++||+||+++|+++.........+......+...+.+.+|+++.|.+...
T Consensus 200 -~---~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~ 268 (315)
T 3bh0_A 200 -D---SRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDY 268 (315)
T ss_dssp -S---CHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHH
T ss_pred -C---CHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccc
Confidence 0 12234677788888888999999999999987764311100011123456779999999999998753
No 18
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.92 E-value=5.5e-24 Score=197.79 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=142.4
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHH----HcCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAE----AMGIDA 172 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~----~~g~~~ 172 (315)
...+++||++.||.+++ |+++|++++|+|+||+|||+|++++|.+++..|.+|+||++|++..+...+ ..+++.
T Consensus 25 ~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~ 102 (338)
T 4a1f_A 25 EVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINM 102 (338)
T ss_dssp CCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCH
T ss_pred CcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCH
Confidence 56789999999999996 999999999999999999999999999999999999999999998763222 123322
Q ss_pred -------------------------CCeEEeCCC--CHHHHHHHHHHHHHcC-CccEEeehhHhhhccccccCCCccCCC
Q 021239 173 -------------------------ENLLIAQPD--SAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 173 -------------------------~~l~i~~~~--~~e~~~~~i~~l~~~~-~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.++++.+.. +.+++...++++.+.+ ++++|||||++.+.......++
T Consensus 103 ~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r----- 177 (338)
T 4a1f_A 103 HDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKER----- 177 (338)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHC-----
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCCh-----
Confidence 135665543 6889999999988887 8999999999988742111111
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
..++..+.+.|+.+|++++|+||+++|+++.......-.+......++.++.+.+|+++.+.|..
T Consensus 178 ----~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~ 242 (338)
T 4a1f_A 178 ----HEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGY 242 (338)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEECHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEecch
Confidence 11255667777778899999999999999887442111111122356778999999999999975
No 19
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.90 E-value=9.7e-23 Score=196.60 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=142.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHH----HHcCCC-
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLA----EAMGID- 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~----~~~g~~- 171 (315)
...+++||+++||+++| |+++|++++|+|+||+|||+|++++|.+++.+|.+|+||++|++..+... ...|++
T Consensus 176 ~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~ 253 (444)
T 3bgw_A 176 NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINA 253 (444)
T ss_dssp SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCH
T ss_pred CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 46789999999999996 99999999999999999999999999999988999999999999987322 222433
Q ss_pred --------------------------CCCeEEeCC--CCHHHHHHHHHHHHHcCCcc--EEeehhHhhhccccccCCCcc
Q 021239 172 --------------------------AENLLIAQP--DSAENLLSVVDTLTKSGSID--VIVVDSVAALIPKCEIGVPIN 221 (315)
Q Consensus 172 --------------------------~~~l~i~~~--~~~e~~~~~i~~l~~~~~~~--lVVIDsl~~l~~~~~~~~~~~ 221 (315)
..++++.+. .+.+++...+++++++++++ +|||||++.+... .. .+
T Consensus 254 ~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~-~~-~~-- 329 (444)
T 3bgw_A 254 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-KA-ND-- 329 (444)
T ss_dssp HHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCS-CS-SS--
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCC-CC-CC--
Confidence 124555554 37889999999998888999 9999999998732 10 10
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 222 ~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
....++..+++.|+.+++++||+||+++|+++.........+......++.++.+.+|+++.+.|.+.
T Consensus 330 -----~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~ 397 (444)
T 3bgw_A 330 -----SRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDY 397 (444)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGG
T ss_pred -----CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEecccc
Confidence 12234677788888888999999999999987763311100011122455579999999999998754
No 20
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.90 E-value=2.7e-22 Score=193.67 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=138.8
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHH----HHHcCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSL----AEAMGID 171 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~----~~~~g~~ 171 (315)
...+++||++.||.++| |+++|++++|+|+||+|||+|+++++.+++. .|.+|+||++|++..+.. +...+++
T Consensus 179 ~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 179 EVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp ----CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCC
T ss_pred CCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 45789999999999995 9999999999999999999999999999987 478999999999877632 2334554
Q ss_pred CC-------------------------CeEEeCCC--CHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCC
Q 021239 172 AE-------------------------NLLIAQPD--SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (315)
Q Consensus 172 ~~-------------------------~l~i~~~~--~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~ 224 (315)
.+ ++++.+.. +.+++...+++++.++++++|||||++.+.... .+.. ..
T Consensus 257 ~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~--~~~~-~~- 332 (444)
T 2q6t_A 257 MNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPG--SGKS-GE- 332 (444)
T ss_dssp TTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-----------
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCc--CCCC-CC-
Confidence 43 24454443 678899999998888899999999999987310 0000 00
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 225 ~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.....+..+++.|+.++++++|+||+++|+++.........+......++.++.+.+|.++.+.|...
T Consensus 333 --~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~ 400 (444)
T 2q6t_A 333 --NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEY 400 (444)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGG
T ss_pred --CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccc
Confidence 12234677788888888999999999999988764311000011122355678999999999999864
No 21
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.90 E-value=4.6e-23 Score=182.28 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=128.6
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC---
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE--- 173 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~--- 173 (315)
++++||++.||++|+ ||+++|++++|+|+||+|||||+++++.+.+..+++|+|+++|++... .++.++|++++
T Consensus 3 ~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 3 RRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred ccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 579999999999999 999999999999999999999999999999988999999999998654 35566777653
Q ss_pred ---CeEEeC-------------------CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHH
Q 021239 174 ---NLLIAQ-------------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI 231 (315)
Q Consensus 174 ---~l~i~~-------------------~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~ 231 (315)
++.+.+ +.+.+++.+.+.+.++..++++||||+++.+... . . .+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-~----~------~~--- 147 (247)
T 2dr3_A 82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-K----P------AM--- 147 (247)
T ss_dssp HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-C----G------GG---
T ss_pred hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-C----H------HH---
Confidence 343332 2356677778888777778999999999988621 1 0 01
Q ss_pred HHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 232 MTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 232 i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
..+.+..|.+.+++.|++||+++|...... ...+..|.+++|.++.+.+..
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~-----------~~~~~~~~~~~D~vi~L~~~~ 198 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVGER-----------GFGGPGVEHGVDGIIRLDLDE 198 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC-CCHHHHSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCcc-----------cccccccceeEEEEEEEEEEc
Confidence 224455666667899999999999976431 112335888889999998864
No 22
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.90 E-value=6.5e-23 Score=178.32 Aligned_cols=175 Identities=27% Similarity=0.437 Sum_probs=132.4
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH----HHHHcCCCCC--
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS----LAEAMGIDAE-- 173 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~----~~~~~g~~~~-- 173 (315)
+++||++.||.+++ ||+++|++++|+|+||+|||||+.+++. ..+++|+|+++|+..... +.+.++++.+
T Consensus 1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 47999999999998 9999999999999999999999999998 568899999999865553 2334455432
Q ss_pred --CeEEeCCCCHHH---HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCc
Q 021239 174 --NLLIAQPDSAEN---LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHT 248 (315)
Q Consensus 174 --~l~i~~~~~~e~---~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i 248 (315)
++.+.++.+.++ .++.++.++.. ++++||||+++.+..... ... ...+.+.+.++.|..+++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~-~~~-------~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE-NRS-------GLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG-GSS-------TTHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC-chH-------HHHHHHHHHHHHHHHHHHHcCC
Confidence 456666555443 44555555544 799999999998863211 100 1123456677777777799999
Q ss_pred EEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 249 LIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 249 ~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
+||+++|....... ....|.|+..|.+.++.++.+.+..
T Consensus 148 ~vi~~~h~~~~~~~------~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 148 PVIVINQVHFDSRT------EMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp CEEEEECSSSSCTT------SSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred EEEEEeeEEEcCCC------CccccCCCcceeecCcEEEEEEEec
Confidence 99999999876532 3457899999999999999999874
No 23
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.89 E-value=3.7e-22 Score=195.53 Aligned_cols=187 Identities=10% Similarity=0.151 Sum_probs=142.6
Q ss_pred CCCCcccc-CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChH--H--HHHcC
Q 021239 96 RRGPVIST-GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS--L--AEAMG 169 (315)
Q Consensus 96 ~~~~~i~T-G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~--~--~~~~g 169 (315)
....+++| |++.||.++| |+++|++++|+|+||+|||+|+++++.+++.+ |.+|+||++|++..+. + +...|
T Consensus 219 ~~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 296 (503)
T ss_dssp SCTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred cccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcC
Confidence 45778999 9999999996 89999999999999999999999999999987 8899999999987653 2 23345
Q ss_pred CCC--------------------------CCeEEeCC---CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCc
Q 021239 170 IDA--------------------------ENLLIAQP---DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPI 220 (315)
Q Consensus 170 ~~~--------------------------~~l~i~~~---~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~ 220 (315)
++. .++++.+. .+.+++...+++++++.++++|||||++.+... . .
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~--~-- 371 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S--G-- 371 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C--S--
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C--C--
Confidence 543 23566554 568899999999988889999999999987631 1 1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCC----CCCCCccccccccccccccceEEEEEeccc
Q 021239 221 NGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQ----GLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 221 ~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~----~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.. .....+.++++.|+.+++++||+||+++|+++ ..... .-.+......|+..+.+.+|++|.|.+.+.
T Consensus 372 ~~----~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~ 444 (503)
T 1q57_A 372 ES----DERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 444 (503)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSS
T ss_pred CC----CHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCc
Confidence 00 12234677788888888999999999999987 32110 000011223567789999999999998754
No 24
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.88 E-value=2.2e-21 Score=187.85 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=139.7
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHH----HHHcCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSL----AEAMGI 170 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~----~~~~g~ 170 (315)
....+++||++.||.+++ |+++|++++|+|+||+|||||+++++.+++. .|.+|+||++|++..+.. +...|+
T Consensus 181 ~~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~ 258 (454)
T 2r6a_A 181 GEITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNI 258 (454)
T ss_dssp CCCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 346889999999999996 9999999999999999999999999999987 477999999999876532 223454
Q ss_pred CCC-------------------------CeEEeCC--CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCC
Q 021239 171 DAE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (315)
Q Consensus 171 ~~~-------------------------~l~i~~~--~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~ 223 (315)
+.+ ++++.+. .+..++...+++++...++++||||+++.+... .... .
T Consensus 259 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~-~~~~-~--- 333 (454)
T 2r6a_A 259 NAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGS-GRSK-E--- 333 (454)
T ss_dssp CHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCS-CC-------
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccC-CCCC-C---
Confidence 422 3455554 378888888998887789999999999998732 1100 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 224 ~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.....+..+++.|+.+++++|++||+++|+++.........+......++..+.+.+|.++.+.+.+.
T Consensus 334 ---~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 334 ---NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ---CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 11234566777777778999999999999988763311000011112355678999999999999864
No 25
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.86 E-value=6.1e-21 Score=166.90 Aligned_cols=178 Identities=27% Similarity=0.388 Sum_probs=125.2
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh------cCCeEEEEecCCCCCh----HHHH
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDP----SLAE 166 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~------~g~~v~~i~~E~~~~~----~~~~ 166 (315)
+.+.++||++.||++++ ||+++|+++.|.||||+|||||+..++..... .+++++|++.+..... .+.+
T Consensus 3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999 99999999999999999999999999987664 3678999999987654 3456
Q ss_pred HcCCCCC----CeEEeCCCCHHH---HHHHHHHHHH-----cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHH
Q 021239 167 AMGIDAE----NLLIAQPDSAEN---LLSVVDTLTK-----SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (315)
Q Consensus 167 ~~g~~~~----~l~i~~~~~~e~---~~~~i~~l~~-----~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~ 234 (315)
.+++.++ ++.+.......+ ..+.+..++. ..+++++++|+++..+. .+..+.. ....+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~~---~~~~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGRG---ALAERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCSTT---HHHHHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCCc---chhHHHHHHHH
Confidence 6677653 676666554332 2344444555 67899999999998763 2322210 01122222445
Q ss_pred HHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEeccc
Q 021239 235 ALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 235 ~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
.+..|.+++++.|++||+++|..+. +|..|.+.++.++.+.+.+.
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~---------------~g~~~~~~~d~~l~l~~~~~ 202 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN---------------GGHILAHSATLRVYLRKGKG 202 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC------------------------CCSEEEEEEECTT
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC---------------cchhhHhhceEEEEEEecCC
Confidence 6667777778899999999998643 67889999999999998543
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.81 E-value=2.8e-19 Score=156.14 Aligned_cols=169 Identities=26% Similarity=0.346 Sum_probs=120.6
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCCCe-
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENL- 175 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~~l- 175 (315)
+.++||++.||.+++ ||+++|++++|+||||+|||||+.+++......+++|+|++.+..... .++..+|++.+++
T Consensus 3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 468999999999998 899999999999999999999999999988888899999999886544 3344567665432
Q ss_pred ----EEe-------------CCCCHHHHHHHHHHHHHcCCcc--EEeehhHhhhccccccCCCccCCChHHHHHHHHHHH
Q 021239 176 ----LIA-------------QPDSAENLLSVVDTLTKSGSID--VIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (315)
Q Consensus 176 ----~i~-------------~~~~~e~~~~~i~~l~~~~~~~--lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l 236 (315)
.+. ...+.+++...+...+...+++ ++|||+++.+... + + ...+ +.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-d----~------~~~~---~~~ 147 (235)
T 2w0m_A 82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-K----P------AMAR---KIS 147 (235)
T ss_dssp TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-C----G------GGHH---HHH
T ss_pred hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-C----H------HHHH---HHH
Confidence 221 1225677777777776667899 9999999988631 1 1 1122 334
Q ss_pred HHHHHHHhccCcEEEEEeccccccCCCCCCCCCccccccccccccccceEEEEEecc
Q 021239 237 RKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 237 ~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
..|..++++.|++||+++|..+.. .+ ..+ ..+.+.+|.++.+.+..
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~-~~---------~~~-~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITT-SQ---------AFG-FGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC----------------------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCccc-cc---------ccc-cchheeeeEEEEEEEEe
Confidence 445555588999999999997421 10 011 45778888888888764
No 27
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=6.7e-18 Score=149.31 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=116.9
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
..+.++||++.||.+++ ||+++|+++.|.||||+|||||+..++.... ..++.++|++.+..... .+++.+|+.++
T Consensus 8 ~~~~i~tg~~~lD~~l~-Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 86 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE 86 (251)
T ss_dssp CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred ccceeecCCHhHHHHhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChH
Confidence 56789999999999999 9999999999999999999999999997666 67888999998876544 34555676544
Q ss_pred C------eEEeC------------------CCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHH
Q 021239 174 N------LLIAQ------------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQS 229 (315)
Q Consensus 174 ~------l~i~~------------------~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~ 229 (315)
+ +.+.+ ....+++.+.+...+...+++++++|+++....... + + ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~--d-~------~~~ 157 (251)
T 2ehv_A 87 KYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE--E-E------RKI 157 (251)
T ss_dssp HHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS--S-G------GGH
T ss_pred HHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC--C-H------HHH
Confidence 2 22221 223455566666666678999999999998873110 0 0 111
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCcccccccccccccc-ceEEEEEec
Q 021239 230 RIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMDEVTSGGNALKFYA-ALRLRMMRT 292 (315)
Q Consensus 230 r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~~~~~gG~~~~~~~-~~rl~l~k~ 292 (315)
.+.+..+.+.+++.|++||+++|....... ..++..+.+.+ |..+.+.+.
T Consensus 158 ---~~~l~~l~~~l~~~g~tii~vtH~~~~~~~----------~~~~~~i~~~~aD~vi~l~~~ 208 (251)
T 2ehv_A 158 ---REVLLKLNTILLEMGVTTILTTEAPDPQHG----------KLSRYGIEEFIARGVIVLDLQ 208 (251)
T ss_dssp ---HHHHHHHHHHHHHHCCEEEEEECCC----C----------CSSSSSCGGGGCSEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHCCCeEEEEECCCCCCcc----------cccccChhhEeeeEEEEEeee
Confidence 122334444446789999999999766510 11223345555 777777654
No 28
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.75 E-value=2.9e-18 Score=155.29 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=114.2
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc----------CCeEEEEecCCCCCh--HHH
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL----------GGYCAYLDVENALDP--SLA 165 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~----------g~~v~~i~~E~~~~~--~~~ 165 (315)
.+.++||+++||.+++ |+++|++++|+|+||+|||||+++++..+... +++|+|++.|+.... .++
T Consensus 10 ~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp HHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred HHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 4569999999999996 89999999999999999999999999877642 478999999998754 355
Q ss_pred HHcCCCC---------CCeEEeCCCC------HHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHH
Q 021239 166 EAMGIDA---------ENLLIAQPDS------AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (315)
Q Consensus 166 ~~~g~~~---------~~l~i~~~~~------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r 230 (315)
..++.+. +++.+.+... .....+.+..++. ++++||||+++.+....+ +. ..
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~--~~~livlDe~~~~~~~d~--~~---------~~ 154 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAE--GRRLMVLDTLRRFHIEEE--NA---------SG 154 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHT--TCSEEEEECGGGGCCSCT--TC---------HH
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcC--CCCEEEECCHHHhcCCCc--Cc---------hH
Confidence 6666654 2444443211 1223555555554 689999999999874211 00 12
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCCCCc--cccccccccccccceEEEEEecc
Q 021239 231 IMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLGRMD--EVTSGGNALKFYAALRLRMMRTR 293 (315)
Q Consensus 231 ~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~~~~--~~~~gG~~~~~~~~~rl~l~k~~ 293 (315)
.+.++++.|..++++.|++||+++|..+... .++..+ ....|+.++...+.....+.+..
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~---~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~ 216 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASKGAA---MMGAGDQQQASRGSSVLVDNIRWQSYLSSMT 216 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC-----------------------CTGGGCSCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCccc---ccCCchhhhhccchhhhccchhhhhhccCCC
Confidence 2455666777777889999999999986542 122111 22466677765555444455543
No 29
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.72 E-value=1e-16 Score=146.15 Aligned_cols=188 Identities=11% Similarity=0.180 Sum_probs=119.8
Q ss_pred CCCCcccc-CcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHHHH--H--cC
Q 021239 96 RRGPVIST-GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAE--A--MG 169 (315)
Q Consensus 96 ~~~~~i~T-G~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~~~--~--~g 169 (315)
....+++| |++.||.+++ |+++|+++.|+|+||+|||||+.+++...... |.+|+|++.|++....+.+ . .+
T Consensus 12 ~~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~ 89 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 89 (296)
T ss_dssp CCCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcC
Confidence 35678999 9999999985 99999999999999999999999999998876 6699999999864331111 0 12
Q ss_pred CCC--------------------------CCeEEeCC---CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCc
Q 021239 170 IDA--------------------------ENLLIAQP---DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPI 220 (315)
Q Consensus 170 ~~~--------------------------~~l~i~~~---~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~ 220 (315)
.+. .++.+.+. .+..++...+...+...++++||||+++.+..... ..
T Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~---~~ 166 (296)
T 1cr0_A 90 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASG---ES 166 (296)
T ss_dssp CCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC------------
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCC---CC
Confidence 221 13444432 46778877777655677899999999998763100 00
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCC---CCCCCCccccccccccccccceEEEEEeccc
Q 021239 221 NGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSG---QGLGRMDEVTSGGNALKFYAALRLRMMRTRL 294 (315)
Q Consensus 221 ~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~---~~~~~~~~~~~gG~~~~~~~~~rl~l~k~~~ 294 (315)
. . ...+..+++.|+.+++++|++||+++|..+..... ....+......|+..+.+.++.++.+.+.+.
T Consensus 167 ----d-~-~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 ----D-E-RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred ----C-H-HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 0 0 01233445555666688999999999997411000 0000011223456688889999999988764
No 30
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.72 E-value=4.6e-17 Score=145.76 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=68.4
Q ss_pred ccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
.++||+++||++|+ ||+++|++++|.|.||+|||+|++|++.+.+++|++|+|+++|+++.. ..++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 48999999999999 999999999999999999999999999999999999999999999987 56788999864
No 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.70 E-value=4.1e-16 Score=153.45 Aligned_cols=173 Identities=20% Similarity=0.183 Sum_probs=125.7
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC-
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE- 173 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~- 173 (315)
..+.++||+++||.+|+ ||+++|+++.|.|+||+|||||+.+++......|++++|++++++..+ .++.++|++.+
T Consensus 259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~ 337 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337 (525)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence 45789999999999999 999999999999999999999999999988878889999999987554 23445666522
Q ss_pred -----CeEEeCC----CCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHh
Q 021239 174 -----NLLIAQP----DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (315)
Q Consensus 174 -----~l~i~~~----~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~ 244 (315)
.+.+.+. .+..+....+...+...+++++|+|+++.+... .. +.+ ..+.+..+.+.++
T Consensus 338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~--------~~~---~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--VS--------NNA---FRQFVIGVTGYAK 404 (525)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SC--------HHH---HHHHHHHHHHHHH
T ss_pred HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CC--------hHH---HHHHHHHHHHHHH
Confidence 2333332 255666666666666678999999999998742 11 122 2234445555557
Q ss_pred ccCcEEEEEeccccccCCCCCCCCCcccccc-ccccccccceEEEEEecc
Q 021239 245 QSHTLIIFLNQVRFSAKSGQGLGRMDEVTSG-GNALKFYAALRLRMMRTR 293 (315)
Q Consensus 245 ~~~i~VI~inq~~~~~~~~~~~~~~~~~~~g-G~~~~~~~~~rl~l~k~~ 293 (315)
+.|++||+++|....... .++ +..+.+.+|.++.+.+.+
T Consensus 405 ~~g~tvilvsh~~~~~~~----------~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 405 QEEITGLFTNTSDQFMGA----------HSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HTTCEEEEEEECSSSSCC----------CSSCSSCCTTTCSEEEEEEEEE
T ss_pred hCCCEEEEEECcccccCc----------ccccCcccceeeeEEEEEEEEE
Confidence 789999999998754411 122 256778888888877654
No 32
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.57 E-value=1e-15 Score=140.39 Aligned_cols=130 Identities=20% Similarity=0.134 Sum_probs=94.4
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec--CCCCChHHHHHcCCCCCCeE
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV--ENALDPSLAEAMGIDAENLL 176 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~--E~~~~~~~~~~~g~~~~~l~ 176 (315)
..++||+++||+++ ||+++|.+++|+||||+|||+||++++.+ .|++|+|+++ ++... .
T Consensus 104 ~~i~TGi~~LD~lL--GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~----------~---- 164 (331)
T 2vhj_A 104 GELVGCSPVVAEFG--GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS----------G---- 164 (331)
T ss_dssp TTCCSBCCEEEEET--TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST----------T----
T ss_pred hccccCcHHHHHHh--CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh----------h----
Confidence 45789999999999 59999999999999999999999999887 5778999998 33311 1
Q ss_pred EeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecc
Q 021239 177 IAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (315)
Q Consensus 177 i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~ 256 (315)
.+ ...++.++.+.+.+...+ +||||+++.+.....-.+.++ .+.+.+.+.+..|..++++.++++|++++.
T Consensus 165 -~~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G-----~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 165 -YN-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG-----GISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -CB-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -hh-cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc-----hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 01 456777776666666555 999999999864222111111 123346678888888889999999987663
No 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.47 E-value=5.5e-13 Score=131.10 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=104.5
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHH-HHHHhcCCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVI-KEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la-~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
...+++||++.||.+.. ||+++|+++.|.||||+|||||+.+++ ..+...+..++|++.++.... .+++.+|+.++
T Consensus 17 ~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp SCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred ccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 46789999999999998 899999999999999999999999975 344444778999998874332 34566787754
Q ss_pred C------eEEeCCC------------CHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHH
Q 021239 174 N------LLIAQPD------------SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQA 235 (315)
Q Consensus 174 ~------l~i~~~~------------~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~ 235 (315)
+ +...... ..+++...+...+...++++|+||++.++.+... .+....+.+.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~--------lD~~~~~~l~~l 167 (525)
T 1tf7_A 96 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYD--------ASSVVRRELFRL 167 (525)
T ss_dssp HHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTC--------CHHHHHHHHHHH
T ss_pred HhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcC--------CHHHHHHHHHHH
Confidence 3 3332211 1334444444445557899999999998874211 111222334444
Q ss_pred HHHHHHHHhccCcEEEEEecccccc
Q 021239 236 LRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 236 l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
++.+ ++.|+|||+++|.....
T Consensus 168 l~~l----~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 168 VARL----KQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHH----HHHTCEEEEEEECSSSS
T ss_pred HHHH----HHCCCEEEEEecCCCCc
Confidence 4444 55799999999987654
No 34
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=99.07 E-value=5.8e-10 Score=97.56 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=84.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
.+|.+++++|++|+||||++++++.++..+|.+|+++.++.... ...+.++|+....+.+ ...+++.+.+.+...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~---~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCcccccc---CCHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999997554321 1234556766655544 234566666665555
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+++|+||+++.+.. . +.+.++.|+ . .+++||++.+..+-.
T Consensus 87 ~~~~dvViIDEaQ~l~~--------------~----~ve~l~~L~---~-~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD--------------R----ICEVANILA---E-NGFVVIISGLDKNFK 129 (223)
T ss_dssp CTTCCEEEECSGGGSCT--------------H----HHHHHHHHH---H-TTCEEEEECCSBCTT
T ss_pred CCCCCEEEEecCccCcH--------------H----HHHHHHHHH---h-CCCeEEEEecccccc
Confidence 56799999999997541 1 223444443 3 499999999976543
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.65 E-value=1.1e-07 Score=79.44 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=35.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVE 157 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E 157 (315)
.+++|..+.|+||||+|||||+..++.... ..|..++|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 345689999999999999999999998887 567688887743
No 36
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.64 E-value=1.1e-07 Score=77.67 Aligned_cols=40 Identities=28% Similarity=0.557 Sum_probs=35.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
+|..+.|+||+|+|||||+..++..+...|.+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 8999999999999999999999988877777799998654
No 37
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3e-07 Score=86.82 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|+++..-++++||||+|||.+|..+|.++ +.+.+.++..+-.. ......+..+..+-...
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~s----------------k~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQ----------------KYIGEGSRMVRELFVMA 237 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSC----------------SSTTHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhc----------------cccchHHHHHHHHHHHH
Confidence 367777779999999999999999998877 45666666432111 11122344444444445
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+...|.+|+||.+.++.+. ...+..+. .....+.+.+.|..+-.+-...++.||.++.--..+
T Consensus 238 r~~aP~IIFiDEiDai~~~-R~~~~~~~--~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 238 REHAPSIIFMDEIDSIGST-RVEGSGGG--DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHTCSEEEEEESSSCCTTS-CSCSSSGG--GGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHhCCceEeeecchhhccC-CCCCCCCC--cHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 5678999999999999843 22221111 112334466666666544455677777655544443
No 38
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=5.8e-07 Score=85.73 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=76.5
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+++..-++++||||+|||++|..+|.++ +.+.+.++..+-... .....+..+..+-...+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~----------------~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK----------------YLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS----------------SCSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc----------------ccchhHHHHHHHHHHHH
Confidence 67777889999999999999999998877 556666664332211 11122333333333445
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...|.+++||.+.++.+. ......+. .....+.+.++|..+..+....++.||.++.--..+
T Consensus 263 ~~aP~IifiDEiD~i~~~-R~~~~~~~--~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATK-RFDAQTGS--DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp HTCSEEEEEECTHHHHCS-CSSSCSCC--CCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred HcCCCeeechhhhhhhcc-ccCCCCCC--ChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 568999999999999843 22111111 113345567777777655556677777665544443
No 39
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=7e-07 Score=84.76 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
.|+++..-++|+||||+|||.+|..+|.++ +.+.+.++..+-.. ......+..+..+-...
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s----------------k~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ----------------KYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC----------------SSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh----------------ccCchHHHHHHHHHHHH
Confidence 477888889999999999999999998887 44565565322111 11223344554444555
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+...|.+|+||.+.++.+.....+..++. ...+.+.+.|..+-......++.||.++.--..+
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 66789999999999998532222111111 2234455666655443344566776655544454
No 40
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.52 E-value=1.5e-07 Score=79.36 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=48.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcC----CCCCCeE-EeCCCCHHHHHHHHHHHHHc
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMG----IDAENLL-IAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g----~~~~~l~-i~~~~~~e~~~~~i~~l~~~ 196 (315)
+++|+|++|||||+||.+++.. +.+++|++++..++.++.+++. -.+.... +..+.+..+. +... .
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~---l~~~--~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL---ITAD--L 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT---SCTT--S
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHH---HHhh--c
Confidence 4789999999999999998754 6789999998876654332221 1112222 2223333322 1111 1
Q ss_pred CCccEEeehhHhhhcc
Q 021239 197 GSIDVIVVDSVAALIP 212 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~ 212 (315)
...+.|+||+++.+..
T Consensus 72 ~~~~~VLvDclt~wl~ 87 (180)
T 1c9k_A 72 APDDAILLECITTMVT 87 (180)
T ss_dssp CTTCEEEEECHHHHHH
T ss_pred ccCCeEEEcCHHHHHH
Confidence 2237999999999884
No 41
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.51 E-value=9.7e-08 Score=89.71 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|||||||+..++.-.....+.+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I 60 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE
Confidence 67999999999999999999988876554433343
No 42
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.51 E-value=1.2e-07 Score=80.19 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=66.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
+|.+++++|++|+||||++++++..+...|.+++++....... .....+.|.....+.+ .+.+++.+.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~---~~~~~~~~~~~---- 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVI---ERPEEMRKYIE---- 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEE---SSGGGGGGGCC----
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEE---CCHHHHHHHhc----
Confidence 4789999999999999999999999988899999886543211 0111122332222222 12222222221
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRF 258 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~ 258 (315)
.+.++|+||.++.+.+ . ....++.+. .+ ++.|+++....+
T Consensus 75 -~~~dvviIDE~Q~~~~--------------~----~~~~l~~l~---~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 -EDTRGVFIDEVQFFNP--------------S----LFEVVKDLL---DR-GIDVFCAGLDLT 114 (184)
T ss_dssp -TTEEEEEECCGGGSCT--------------T----HHHHHHHHH---HT-TCEEEEEEESBC
T ss_pred -CCCCEEEEECcccCCH--------------H----HHHHHHHHH---HC-CCCEEEEeeccc
Confidence 3589999999997632 0 223444443 44 899998877543
No 43
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.50 E-value=1.2e-06 Score=79.67 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=72.8
Q ss_pred ccccCcHHHHHhhcCCCCCC-------CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHH
Q 021239 100 VISTGSLKLDLALGIGGLPK-------GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAE 166 (315)
Q Consensus 100 ~i~TG~~~LD~~l~~GGl~~-------G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~ 166 (315)
.+..+..+|+..++ ++..+ |.++.+.|++|+||||++..++......|++|++++.+..... .+++
T Consensus 72 ~~~~~~~~l~~~~~-~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 72 FIKIVYDELSNLFG-GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp HHHHHHHHHHHHTT-CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 35667888888887 55333 8899999999999999999999999989999999999866543 1344
Q ss_pred HcCCCCCCeEEeCCCCHHHHHH-HHHHHHHcCCccEEeehhHhh
Q 021239 167 AMGIDAENLLIAQPDSAENLLS-VVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 167 ~~g~~~~~l~i~~~~~~e~~~~-~i~~l~~~~~~~lVVIDsl~~ 209 (315)
..|++.-. .....+..++.. .+.. .+..++++|+||+...
T Consensus 151 ~~~v~v~~--~~~~~~p~~~~~~~l~~-~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 151 QIGVPVYG--EPGEKDVVGIAKRGVEK-FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHTCCEEC--CTTCCCHHHHHHHHHHH-HHHTTCSEEEEECCCS
T ss_pred cCCeEEEe--cCCCCCHHHHHHHHHHH-HHhCCCCEEEEeCCCC
Confidence 55554210 001123444443 3333 3335789999998543
No 44
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=4e-07 Score=86.89 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|+++..-++|+||||+|||++|..+|.++ +.+.+.++...-.. ......+..+..+-...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~----------------~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQ----------------MYIGEGAKLVRDAFALA 270 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCS----------------SCSSHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhh----------------cccchHHHHHHHHHHHH
Confidence 478888889999999999999999998877 45666666422111 11122344444444444
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+...|.+|+||.+.++.+. ...+..+. .....+.+...|..+..+....++.||.++.--..+
T Consensus 271 ~~~aP~IifiDEiDal~~~-R~~~~~~~--~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTK-RFDSEKSG--DREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp HHHCSEEEEEECTHHHHCC-CSSGGGGT--THHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred HhcCCeEEeecchhhhhhc-cCCCCCCC--chHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 5568999999999999843 22221111 112233345555555433334567777555444444
No 45
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.49 E-value=3.2e-07 Score=82.24 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 6799999999999999999998887655444555544
No 46
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.8e-07 Score=85.00 Aligned_cols=124 Identities=18% Similarity=0.136 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
.|+++..-++|+||||+|||++|..+|.++ +.+.++++...-... .....+..+..+-...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk----------------~~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK----------------YIGESARIIREMFAYA 270 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS----------------SSSHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc----------------cchHHHHHHHHHHHHH
Confidence 478888889999999999999999998877 556666664332211 1122344444444555
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+...|.+|+||.+.++.+.....+.. ......+.+..+|..+-..-...++.||.++.--..+
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~---~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTS---ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCS---STTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HhcCCceeeeecccccccccccCCCC---cchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 66789999999999988432211111 1112233455556555433333456666554433344
No 47
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.46 E-value=2.6e-07 Score=81.27 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I 62 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 67999999999999999999987765544433444
No 48
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.45 E-value=3.2e-07 Score=82.58 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+++|+++.|.||+|+|||||+..++.......+.+ +++.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I-~~~G 69 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI-LFDN 69 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE-EECC
Confidence 67999999999999999999988776554444444 4443
No 49
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.45 E-value=2.8e-07 Score=86.12 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=72.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC--Ch-H---HHHHcCCCCCCeEEeCCCCHHHHH--
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-S---LAEAMGIDAENLLIAQPDSAENLL-- 187 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~--~~-~---~~~~~g~~~~~l~i~~~~~~e~~~-- 187 (315)
-+++|+++.|.||+|+|||||+..++.-.....+.+. ++...-. .. . ..+.+|+-+++..+....+..+.+
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~-i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL-VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence 3679999999999999999999877655444444444 4432211 11 1 123456655543333222222111
Q ss_pred -------------HHHHHHH-----------------------------HcCCccEEeehhHhhhccccccCCCccCCCh
Q 021239 188 -------------SVVDTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (315)
Q Consensus 188 -------------~~i~~l~-----------------------------~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~ 225 (315)
+.+.+++ -..+|++++.|..++-..
T Consensus 129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD------------- 195 (366)
T 3tui_C 129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD------------- 195 (366)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSC-------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC-------------
Confidence 1111111 024678888887665541
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 226 ~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
....+.+.+.++++. ++.|+|||+++|-...+
T Consensus 196 ~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 196 PATTRSILELLKDIN---RRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHHHHHHHHHHHH---HHSCCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHH
Confidence 122334555555554 77899999999975543
No 50
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.44 E-value=3.2e-07 Score=80.03 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 6799999999999999999998776554333444433
No 51
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.42 E-value=2e-07 Score=86.90 Aligned_cols=36 Identities=33% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|||||||+..++.......+.+
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I 61 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence 367999999999999999999988776554433443
No 52
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.40 E-value=3.7e-07 Score=85.31 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|||||||+..++.-.....+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE
Confidence 67999999999999999999988776544333444
No 53
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.39 E-value=2.1e-06 Score=76.75 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=69.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+.++..++|+||||+|||+++..++... +.++++++...-... .....+.....+.....
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK----------------FIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh----------------ccchHHHHHHHHHHHHH
Confidence 56677789999999999999999887664 567777765332211 01112233333333344
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+++||.+..+.+... ....+. .....+.+...+..+.......++.||.+++....+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~-~~~~~~--~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRT-DALTGG--DREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCS-SSCCGG--GGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HcCCeEEEEECHHHhcccCc-cccCCc--cHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 56789999999999874321 111000 112222333444333222223467777777654443
No 54
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.39 E-value=4.7e-07 Score=80.97 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 36799999999999999999998877554433444443
No 55
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.38 E-value=3.2e-07 Score=85.65 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|||||||+..++.-.....+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence 67999999999999999999988776544333344
No 56
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.37 E-value=4.7e-07 Score=80.64 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 73 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 3679999999999999999999887765443334443
No 57
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=98.37 E-value=3.4e-06 Score=69.28 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=88.1
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEe-cCCCChhHHHHHHHHHHHh--cCCeEEEEecCCCCChHHHHHcCCCCCC
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYG-REASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAEN 174 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G-~~GsGKTtlal~la~~~~~--~g~~v~~i~~E~~~~~~~~~~~g~~~~~ 174 (315)
...+|.|.+.+|..+.+||++.|.+++|.. .+|.|-..|+.-++..... .++.++||..............|+++++
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~r 101 (161)
T 1oft_A 22 SNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRER 101 (161)
T ss_dssp ---------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGG
T ss_pred CccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHH
Confidence 456799999999988548999999999985 5777777677666666654 6789999998888888888899999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 175 LLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 175 l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
+.+.++.+..+.++.+++.++.+.+..||.. +..+ + ...+|+|..-++.-++..+++
T Consensus 102 ll~v~~~~~~daLwa~EqALrsG~~~aVl~W-l~~l------~---------------~~~~RRLqlAAe~g~~~~fll 158 (161)
T 1oft_A 102 ILLLQAKDNAAALALSCEALRLGRSHTVVSW-LEPL------S---------------RAARKQLSRAAQLGQAQSLNI 158 (161)
T ss_dssp EEEECCSSTTHHHHHHHHHHHTTCEEEEEEC-CSSC------C---------------HHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCChHHHHHHHHHHHhcCCccEEEEC-CCcC------C---------------hHHHHHHHHHHHhCCCeEEEe
Confidence 9999999889999999999999999888875 1111 0 123667766666667776654
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.8e-06 Score=82.67 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|+++..-++|+||||+|||++|..+|.++ +.+.+.++..+-.. ......+..+..+-...
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s----------------k~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ----------------KYVGEGARMVRELFEMA 298 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC----------------CSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc----------------ccCCHHHHHHHHHHHHH
Confidence 378888889999999999999999998877 45666665422111 11122344444444445
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
+...+.+|+||.+..+... ...+..+ ......+.+.+.|..+.......++.||.++.--..
T Consensus 299 r~~aP~IIfiDEiDai~~~-R~~~~~~--~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 299 RTKKACIIFFDEIDAVGGA-RFDDGAG--GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp HHTCSEEEEEECCTTTSBC-CSSSSCG--GGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred HhcCCceEeeccccccccc-ccCcCCC--ccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 5678999999999998842 2221111 111223345555555543333446666655443333
No 59
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.36 E-value=3.7e-07 Score=85.59 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=27.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|||||||+..++.-.....+.+
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 68 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE
Confidence 67999999999999999999988776544333444
No 60
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.35 E-value=3.8e-07 Score=85.01 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|||||||+..++.......+.+
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 72 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence 67999999999999999999988775544333343
No 61
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.30 E-value=4e-07 Score=80.30 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++ +++.|.||+|+|||||+..++.......+.+.|
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 668 999999999999999998877655444444433
No 62
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.29 E-value=1.1e-06 Score=78.21 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 36799999999999999999998877655433444433
No 63
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.28 E-value=7e-07 Score=83.02 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=41.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC-ChHHHHHcCCCCCCeEEeCCCCHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DPSLAEAMGIDAENLLIAQPDSAE 184 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~-~~~~~~~~g~~~~~l~i~~~~~~e 184 (315)
+++|+++.|.||+|||||||+..++.-.....+.+ +++...-. .....+.+|+.+++..+....+..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 90 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE-EETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE-EECCEECCCCchhhCcEEEEecCcccCCCCCHH
Confidence 67999999999999999999988776554444444 44432211 122345566666654444333333
No 64
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.27 E-value=4.2e-07 Score=85.29 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=27.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|||||||+..++.-.....+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence 67999999999999999999988775544333333
No 65
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.26 E-value=6e-06 Score=75.78 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
|+..+..-++|+||||+|||++|..++... .+.++++++...-... .....+..+..+-...
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~----------------~~g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----------------WLGESEKLVKNLFQLA 101 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCS----------------SCCSCHHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhh----------------hhhHHHHHHHHHHHHH
Confidence 456677889999999999999999998775 2456666765432210 0111233333333344
Q ss_pred HcCCccEEeehhHhhhcc
Q 021239 195 KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~ 212 (315)
....+.+|+||.+..+.+
T Consensus 102 ~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHTSSEEEEEETTTGGGC
T ss_pred HhcCCcEEEeecHHHhcc
Confidence 456789999999999874
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.24 E-value=6.4e-06 Score=76.15 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=59.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhc---CCeEEEEecCCCCCh-HHHH----HcCCCCCCeEEeCCCCHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL---GGYCAYLDVENALDP-SLAE----AMGIDAENLLIAQPDSAENLLSV 189 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~---g~~v~~i~~E~~~~~-~~~~----~~g~~~~~l~i~~~~~~e~~~~~ 189 (315)
..+..++|+||+|+|||+++..++...... +..++|++....... .... .++.... ....+..++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHH
Confidence 356789999999999999999998877655 678889986433322 2222 2232211 112245566666
Q ss_pred HHHHHHcC-CccEEeehhHhhhc
Q 021239 190 VDTLTKSG-SIDVIVVDSVAALI 211 (315)
Q Consensus 190 i~~l~~~~-~~~lVVIDsl~~l~ 211 (315)
+...+... .+.+|+||.+..+.
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHHhccCCeEEEEEcChhhhh
Confidence 66555444 38899999999886
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.23 E-value=2.2e-05 Score=72.81 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCCh-----HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~-----~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
.++|+||||+|||+++..++...... +..++|++....... .....+|..... ...+..++...+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR----RGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS----SCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC----CCCCHHHHHHHHHHHHh
Confidence 89999999999999999998887665 578899986554432 234445543211 12245666666655554
Q ss_pred c-CCccEEeehhHhhh
Q 021239 196 S-GSIDVIVVDSVAAL 210 (315)
Q Consensus 196 ~-~~~~lVVIDsl~~l 210 (315)
. .++.+|+||.+..+
T Consensus 122 ~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCEEEEEETGGGS
T ss_pred hcCCeEEEEEECcccc
Confidence 3 45889999998876
No 68
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.23 E-value=9.4e-06 Score=77.44 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=63.8
Q ss_pred HHHHHhhcCCCC-------CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCC
Q 021239 106 LKLDLALGIGGL-------PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDA 172 (315)
Q Consensus 106 ~~LD~~l~~GGl-------~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~ 172 (315)
.+|-.+|+ ++- .++.++.++|++|+||||++..++......|.+|++++.+..... .+++..|++.
T Consensus 77 ~eL~~~L~-~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 77 DELSKLFG-GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp HHHHHHHC-SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHhcC-ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce
Confidence 45566666 432 247899999999999999999999999999999999998754332 1233344431
Q ss_pred CCeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHh
Q 021239 173 ENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 173 ~~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~ 208 (315)
.. .....+...+...........++++|+||...
T Consensus 156 ~~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 156 YG--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp EC--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECC
T ss_pred ee--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 11112233333222222333578999999664
No 69
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.22 E-value=3.2e-06 Score=71.95 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
.+|.+..++|+.|+||||.++.++.++..+|.+|+++.+.-... .....++|+......+... +++++.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~~--- 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYFE--- 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHHh---
Confidence 46889999999999999999999999999999999986322111 1122333433333333222 23333221
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
...++|+||..+.+.+ . ....++.+. .. +++||+.-...
T Consensus 80 --~~~dvViIDEaqfl~~--------------~----~v~~l~~l~---~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFFDD--------------E----IVEIVNKIA---ES-GRRVICAGLDM 118 (191)
T ss_dssp --TTCSEEEECSGGGSCT--------------H----HHHHHHHHH---HT-TCEEEEEECSB
T ss_pred --ccCCEEEEECCCCCCH--------------H----HHHHHHHHH---hC-CCEEEEEeccc
Confidence 2589999999887532 1 223455543 44 99999985543
No 70
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.22 E-value=1.3e-05 Score=73.14 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHH-HHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENL-LSVV 190 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~-~~~i 190 (315)
.+|.++.|.|++|+||||++..+|......|++|++++.+..... .+++..|++. +..........+ ...+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHHH
Confidence 468899999999999999999999999888999999998754322 2344555431 000011122222 2233
Q ss_pred HHHHHcCCccEEeehhHh
Q 021239 191 DTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~ 208 (315)
... ...++++|+||...
T Consensus 180 ~~a-~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHA-LARNKDVVIIDTAG 196 (306)
T ss_dssp HHH-HHTTCSEEEEEECC
T ss_pred HHH-HhcCCCEEEEECCC
Confidence 332 23578999999765
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.22 E-value=1.4e-06 Score=77.21 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++...... +.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~ 57 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ 57 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE
Confidence 6799999999999999999998877655444 4443
No 72
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.20 E-value=2.7e-06 Score=73.46 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=68.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
.+|.+.+++|+.|+||||.+++.+.++..+|.+|+++.+.-... .....++|+....+.+.. .+++++.+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~---~~~~~~~~~--- 99 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA---SKDIFKHIT--- 99 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSS---GGGGGGGCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCC---HHHHHHHHh---
Confidence 56899999999999999999999999999999999987543221 134555566544433322 122222211
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
..+++|+||..+.+.. . ..+.++.++ . .++.||+.-...+-
T Consensus 100 --~~~dvViIDEaQF~~~--------------~----~V~~l~~l~---~-~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 100 --EEMDVIAIDEVQFFDG--------------D----IVEVVQVLA---N-RGYRVIVAGLDQDF 140 (214)
T ss_dssp --SSCCEEEECCGGGSCT--------------T----HHHHHHHHH---H-TTCEEEEEECSBCT
T ss_pred --cCCCEEEEECcccCCH--------------H----HHHHHHHHh---h-CCCEEEEEeccccc
Confidence 2589999999998642 0 124455553 3 49999988775443
No 73
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.19 E-value=2.5e-06 Score=76.11 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 36799999999999999999998877654433444433
No 74
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.18 E-value=1.1e-06 Score=77.98 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=25.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+++|+++.|.||+|+|||||+..++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999999988776543
No 75
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.18 E-value=3.2e-07 Score=85.47 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+++|+++.|.||+|||||||+..++.-..
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 67999999999999999999988776543
No 76
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.15 E-value=3e-06 Score=74.63 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=28.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 679999999999999999999887765433334443
No 77
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.14 E-value=1.6e-05 Score=73.53 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhc------CCeEEEEecCCCCCh-----HHHHHcCCCCCCeEEeCCCCHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENL 186 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~------g~~v~~i~~E~~~~~-----~~~~~~g~~~~~l~i~~~~~~e~~ 186 (315)
..+..++|+||||+|||+++..++...... +..++|++....... .....++.... ....+..++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~ 117 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEV 117 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHH
Confidence 346689999999999999999998877654 667888887655443 24455554321 112235565
Q ss_pred HHHHHHHHHc-CCccEEeehhHhhhc
Q 021239 187 LSVVDTLTKS-GSIDVIVVDSVAALI 211 (315)
Q Consensus 187 ~~~i~~l~~~-~~~~lVVIDsl~~l~ 211 (315)
...+...+.. .++.+|+||.+..+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhc
Confidence 6655555543 347799999999886
No 78
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.13 E-value=1.1e-06 Score=79.19 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~ 79 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE
Confidence 679999999999999999999887665443344443
No 79
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.13 E-value=6.1e-06 Score=71.17 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
..|..+.. ++ .+..++|+||||+|||+++..++......+.++.|++...
T Consensus 41 ~~l~~~~~-~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 41 GALKSAAS-GD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHH-TC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHHHh-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44555555 32 6788999999999999999999999888888999998644
No 80
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.12 E-value=2e-05 Score=71.87 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=34.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
..+..++|+||||+|||+++..++......+.+++|++.+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567899999999999999999998887778899999864
No 81
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=1.5e-05 Score=76.12 Aligned_cols=89 Identities=25% Similarity=0.209 Sum_probs=59.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEeCCCCHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~ 192 (315)
++.++.++|++|+||||++..+|..+...|.+|++++.+..... .+++..|++.-. .....+..++....-.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~--~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG--NPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC--CTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe--cCCCCCHHHHHHHHHH
Confidence 36799999999999999999999999999999999998765543 233444433110 0111233333322222
Q ss_pred HHHcCCccEEeehhHhh
Q 021239 193 LTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 193 l~~~~~~~lVVIDsl~~ 209 (315)
.....++++|+||....
T Consensus 177 ~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 33445799999997653
No 82
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=98.11 E-value=2.1e-05 Score=68.65 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=69.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHc
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~ 196 (315)
.|.+..++|+.|+||||-+++.+.++..+|.+|+++-+.-... .....++|+....+.+... +++++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~------ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA------ 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh------
Confidence 5899999999999999999999999999999999987543322 2344555665544443322 3333332
Q ss_pred CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccc
Q 021239 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFS 259 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~ 259 (315)
.+.++|+||..+.+.. +.+.++.+ .+.|+.||+.-.-.+-
T Consensus 89 ~~~dvViIDEaQF~~~-------------------v~el~~~l----~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-------------------IVEFCEAM----ANAGKTVIVAALDGTF 128 (234)
T ss_dssp TTCSEEEESSGGGCTT-------------------HHHHHHHH----HHTTCEEEEECCSBCT
T ss_pred ccCCEEEEEchhhhhh-------------------HHHHHHHH----HhCCCEEEEEeccccc
Confidence 4689999999997641 22333333 4579999988776543
No 83
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.08 E-value=4.5e-06 Score=74.85 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~ 77 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL 77 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 3679999999999999999999887765544344443
No 84
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=3e-05 Score=63.88 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHh-------cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHH----HHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQK-------LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE----NLL 187 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~-------~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e----~~~ 187 (315)
.+..++|+|+||+|||+++..++..... .+.++++++...... + ..... .+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~~~~~~~~~~~~ 104 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------G----------AKYRGEFEERLK 104 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT-------T----------TCSHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc-------c----------CCccccHHHHHH
Confidence 3567899999999999999999888765 356777776421100 0 01111 222
Q ss_pred HHHHHHHHcCCccEEeehhHhhhcc
Q 021239 188 SVVDTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 188 ~~i~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
..+..+....++.+++||.+..+..
T Consensus 105 ~~~~~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 105 GVLNDLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHHHHHSTTTEEEEEETGGGGTT
T ss_pred HHHHHHhhcCCCeEEEEeCHHHHhc
Confidence 2333333445678999999998863
No 85
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.07 E-value=1e-05 Score=70.49 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCcE-EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHH-cCCCCC--CeEEe-----CCCCHHHHHHH
Q 021239 119 KGRI-VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA-MGIDAE--NLLIA-----QPDSAENLLSV 189 (315)
Q Consensus 119 ~G~i-~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~-~g~~~~--~l~i~-----~~~~~e~~~~~ 189 (315)
+|.+ +.+.|+||+||||++++++..++..|.+|++++.+.......... .+.... ..... .....+..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L-- 81 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL-- 81 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH--
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH--
Confidence 4565 788999999999999999999999999999999987655543222 233221 11111 112233222
Q ss_pred HHHHHHcCCccEEeehhHhhh
Q 021239 190 VDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 190 i~~l~~~~~~~lVVIDsl~~l 210 (315)
. ..++++|||.+...
T Consensus 82 -~-----~~pdlvIVDElG~~ 96 (228)
T 2r8r_A 82 -K-----AAPSLVLVDELAHT 96 (228)
T ss_dssp -H-----HCCSEEEESCTTCB
T ss_pred -h-----cCCCEEEEeCCCCC
Confidence 1 26899999998854
No 86
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.07 E-value=3.6e-06 Score=74.43 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=28.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 6799999999999999999998877655444444433
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.06 E-value=3.5e-05 Score=67.86 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=45.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccE
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDV 201 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~l 201 (315)
-++|+||||+|||+++..++... +.++++++...-... .+ ......+...+. ......+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-------------~~--~~~~~~~~~~~~-~a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-------------FV--GVGASRVRDMFE-QAKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS-------------CC--CCCHHHHHHHHH-HHHTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH-------------hh--hhhHHHHHHHHH-HHHHcCCee
Confidence 38999999999999999988765 446666764332110 00 111222222222 233456789
Q ss_pred EeehhHhhhcc
Q 021239 202 IVVDSVAALIP 212 (315)
Q Consensus 202 VVIDsl~~l~~ 212 (315)
++||.+..+..
T Consensus 108 l~iDeid~l~~ 118 (257)
T 1lv7_A 108 IFIDEIDAVGR 118 (257)
T ss_dssp EEETTHHHHTC
T ss_pred ehhhhhhhhcc
Confidence 99999988874
No 88
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.03 E-value=9.9e-06 Score=82.83 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|+.+..-++|+||||+|||+++..+|.++ +...++++..+-. + ......+..+..+-+..
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l~--------s--------k~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM--------S--------KLAGESESNLRKAFEEA 293 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHHH--------S--------SCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHhh--------c--------ccchHHHHHHHHHHHHH
Confidence 477777889999999999999999887654 5566666632100 0 00112233333333344
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+...+.+|+||.+..+.+... .+ .++ ...+.+.+++..+..+....++.||.++.--..+
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~-~~-~~~----~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKRE-KT-HGE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTT-TC-CCT----THHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred HHcCCeEEEEehhcccccccC-CC-CCh----HHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 567899999999999985322 11 111 2233455555555544455677777665544444
No 89
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=1.4e-05 Score=73.12 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=52.0
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
++..+..-++|+||||+|||++|..++... +.++++++...-.. . .....+..+..+-...
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~-----~-----------~~g~~~~~~~~~f~~a 106 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVS-----K-----------WMGESEKLVKQLFAMA 106 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHT-----T-----------TGGGHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhh-----c-----------ccchHHHHHHHHHHHH
Confidence 344556779999999999999999997765 56677776421100 0 0012233343343444
Q ss_pred HcCCccEEeehhHhhhcc
Q 021239 195 KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~ 212 (315)
....+.+|+||.+..+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHTSSEEEEEECGGGGSC
T ss_pred HhcCCeEEEechhhhhhc
Confidence 556889999999999874
No 90
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.01 E-value=3.6e-05 Score=74.38 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=36.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
+.+|.++.|.|++|+||||++..++......+++|.+.+.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 568999999999999999999999988887888888876654
No 91
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.01 E-value=2.7e-05 Score=70.54 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=66.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|++++..++|+||||+|||++|..++... +.+.++++... ....-+|... .....++. ...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~----l~~~~~g~~~--------~~~~~~f~----~a~ 105 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFGESE--------ANVREIFD----KAR 105 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH----HHHHHHTTCT--------THHHHHHH----HHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH----HHhhhcCchH--------HHHHHHHH----HHH
Confidence 67888999999999999999999888765 45565555311 1111122110 01122222 223
Q ss_pred cCCccEEeehhHhhhccccccC-CCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIG-VPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~-~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+++||.+..+.+..... ...+... .+.+.+.+..+..+....++.||.+++....+
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~----~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAA----DRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSC----CHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHH----HHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3578999999999887421111 1111111 11223444444322234577788777655444
No 92
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.01 E-value=1.2e-05 Score=68.30 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC--hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~--~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
..|.+..|+|+.|+||||-+++.+.+...++.+|+|+..+-... .....++|...+.+.+ .+.+++.+..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~---~~~~d~~~~~----- 89 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPA---CLLRDVAQEA----- 89 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEE---SSGGGGHHHH-----
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceec---CCHHHHHHhc-----
Confidence 46899999999999999999999999999999999998653322 1122233322222222 2233444321
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccccccCCCCCCC
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSAKSGQGLG 267 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~~~~~~~~ 267 (315)
.++++|+||..+.+ .. ..+.+..| .+.|+.||+.....+-- +..|+
T Consensus 90 -~~~DvIlIDEaQFf-k~------------------~ve~~~~L----~~~gk~VI~~GL~~DF~--~~~F~ 135 (195)
T 1w4r_A 90 -LGVAVIGIDEGQFF-PD------------------IVEFCEAM----ANAGKTVIVAALDGTFQ--RKPFG 135 (195)
T ss_dssp -HTCSEEEESSGGGC-TT------------------HHHHHHHH----HHTTCEEEEEEESBCTT--SSBCT
T ss_pred -cCCCEEEEEchhhh-HH------------------HHHHHHHH----HHCCCeEEEEecccccc--cccch
Confidence 25899999999987 31 12334444 36799988877655433 33455
No 93
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.00 E-value=3.8e-05 Score=73.48 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVEN 158 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~ 158 (315)
+..++|+||||+|||||+..++...... +.+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 6789999999999999999998887665 77888988643
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.00 E-value=3.7e-05 Score=70.07 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=36.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
+|+++.|.||+|+||||++..++......+++|.+.+.+-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 6899999999999999999999998888888998887664
No 95
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.00 E-value=2e-05 Score=72.53 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=37.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
++|.++.|.||+|+||||++..++......++++.+.+.+-.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 579999999999999999999999988888999998887654
No 96
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.99 E-value=2.5e-05 Score=68.56 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|++....++|+||||+|||+++..++... +.++++++...-... ........+...+.. ..
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-a~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---------------IGGLGAARVRSLFKE-AR 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS---------------STTHHHHHHHHHHHH-HH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh---------------ccChhHHHHHHHHHH-HH
Confidence 44555678999999999999999998765 456777775432210 000011122222222 23
Q ss_pred cCCccEEeehhHhhhcc
Q 021239 196 SGSIDVIVVDSVAALIP 212 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~ 212 (315)
...+.+|+||.+..+..
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34689999999998863
No 97
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.97 E-value=3e-06 Score=73.42 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=27.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I 66 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 67999999999999999999988765543333333
No 98
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.97 E-value=6e-06 Score=75.37 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I 111 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE
Confidence 67999999999999999999987765554433443
No 99
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.97 E-value=5.5e-05 Score=62.22 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHh-------cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHH-HHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQK-------LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE-NLLSVV 190 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~-------~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e-~~~~~i 190 (315)
.+..++|+||||+|||+++..++..... .+..+++++.... .... . ...... .+...+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~-------~~~~~~~~~~~~~ 107 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL-----IAGA--K-------YRGDFEERLKSIL 107 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH-----HHHC--C-------SHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh-----hcCC--C-------chhHHHHHHHHHH
Confidence 3557899999999999999999888765 2556666653110 0000 0 000011 122223
Q ss_pred HHHHHcCCccEEeehhHhhhcc
Q 021239 191 DTLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~~l~~ 212 (315)
..+....++.+++||.+..+.+
T Consensus 108 ~~~~~~~~~~vl~iDe~~~l~~ 129 (187)
T 2p65_A 108 KEVQDAEGQVVMFIDEIHTVVG 129 (187)
T ss_dssp HHHHHTTTSEEEEETTGGGGSS
T ss_pred HHHHhcCCceEEEEeCHHHhcc
Confidence 3333334678999999998863
No 100
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.97 E-value=3.1e-05 Score=71.92 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=50.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
++..+..-++|+||||+|||++|..++... +.++++++... .... + ....+.....+-...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~-----l~~~--------~---~g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD-----LVSK--------W---MGESEKLVKQLFAMA 139 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHH-----HHSC--------C------CHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHH-----Hhhh--------h---cchHHHHHHHHHHHH
Confidence 355666779999999999999999998876 45666665321 1000 0 011123333333334
Q ss_pred HcCCccEEeehhHhhhcc
Q 021239 195 KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~ 212 (315)
....+.+|+||.+..+.+
T Consensus 140 ~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HHTSSEEEEEECGGGGTC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 456789999999998874
No 101
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=4e-05 Score=68.82 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=51.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
.++..++|+||||+|||+++..++... +.+.++++...-... .....+.....+.......
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~ 112 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHM 112 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHc
Confidence 356789999999999999999887765 456666665332110 0122344444444444556
Q ss_pred CccEEeehhHhhhcc
Q 021239 198 SIDVIVVDSVAALIP 212 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~ 212 (315)
.+.+|+||.+..+..
T Consensus 113 ~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLS 127 (297)
T ss_dssp CSEEEEEETGGGTSB
T ss_pred CCcEEEeccHHHhcc
Confidence 889999999999874
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.96 E-value=2.7e-05 Score=70.67 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChH------HHHHcCCCCCCeEEeCCCCHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPS------LAEAMGIDAENLLIAQPDSAENLLSVV 190 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~------~~~~~g~~~~~l~i~~~~~~e~~~~~i 190 (315)
.+|.++.|.|++|+||||++..++..+.. .|.+|++++.+...... +++..|++.. ...+..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-----~~~~~~~l~~al 177 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE-----VCYTKEEFQQAK 177 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-----BCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE-----ecCCHHHHHHHH
Confidence 36889999999999999999999998885 67799999987643221 2233444321 112344444444
Q ss_pred HHHHHcCCccEEeeh
Q 021239 191 DTLTKSGSIDVIVVD 205 (315)
Q Consensus 191 ~~l~~~~~~~lVVID 205 (315)
..+ .++++|+||
T Consensus 178 ~~~---~~~dlvIiD 189 (296)
T 2px0_A 178 ELF---SEYDHVFVD 189 (296)
T ss_dssp HHG---GGSSEEEEE
T ss_pred HHh---cCCCEEEEe
Confidence 432 568999999
No 103
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.96 E-value=2.1e-06 Score=71.33 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALH 139 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~ 139 (315)
+++|+++.|.||||||||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 56899999999999999999984
No 104
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.94 E-value=1.6e-05 Score=68.66 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC---hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDTL 193 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~---~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l 193 (315)
-..|.+.+|+|+-|+||||.++..+.++...+.+|+++...-... .....+.|...+.+.+... .++.+.+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i--- 98 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD--- 98 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH---
Confidence 356899999999999999999888999988899998886543221 1344556655554444332 2232222
Q ss_pred HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEeccc
Q 021239 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVR 257 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~ 257 (315)
..++++|+||..+.+-. .+...+..+ + +.|++||+.-=..
T Consensus 99 --~~~~dvV~IDEaQFf~~------------------~~v~~l~~l---a-~~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 99 --LTNVDVIGIDEVQFFDD------------------EIVSIVEKL---S-ADGHRVIVAGLDM 138 (219)
T ss_dssp --CTTCSEEEECCGGGSCT------------------HHHHHHHHH---H-HTTCEEEEEEESB
T ss_pred --hcCCCEEEEechhcCCH------------------HHHHHHHHH---H-HCCCEEEEeeccc
Confidence 24789999999997652 133444444 3 5799988766543
No 105
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=0.00011 Score=71.05 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
-+++| ++|+||||+|||+++..++... +.+.++++...-... + .-.....+...+.. ..
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~-------------~--~g~~~~~~r~lf~~-A~ 105 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL-------------F--VGVGAARVRDLFAQ-AK 105 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC-------------C--TTHHHHHHHHHHHH-HH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH-------------H--hcccHHHHHHHHHH-HH
Confidence 34445 8899999999999999988765 556777764332211 0 00011122222322 23
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.+|+||.+..+.+.... +..+. . ....+.+.+.+..+..+-...++.||.+++....+
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~-~~~g~-~-~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGA-GLGGG-H-DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HTCSEEEEEETGGGTCCC------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred hcCCCEEEEechhhhhhhccc-ccCcC-c-HHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 457899999999998742110 00000 0 01122234444444332234578888777765444
No 106
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=4.8e-05 Score=64.32 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=33.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
..++|+||||+|||+++..++..+...+.+++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6799999999999999999999888888899998863
No 107
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.90 E-value=3.2e-05 Score=70.53 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEecC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVE 157 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~E 157 (315)
+..++|+||||+|||+|+..++..+. ..|.+|+|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 67899999999999999999999998 888899998853
No 108
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.90 E-value=3.9e-05 Score=70.39 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH--HHHHcCC-C-CCCeEEe--CC---CCHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--LAEAMGI-D-AENLLIA--QP---DSAENLLS 188 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~--~~~~~g~-~-~~~l~i~--~~---~~~e~~~~ 188 (315)
.+|.++.|+|++|+||||++..+|......|++|++++.+...... ....++- . ..++.+. +. ++.....+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 5789999999999999999999999998889999999987643221 1111210 0 2344444 11 12222333
Q ss_pred HHHHHHHcCCccEEeehhHhhh
Q 021239 189 VVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 189 ~i~~l~~~~~~~lVVIDsl~~l 210 (315)
.+.... ..++++|+||....+
T Consensus 183 ~l~~~~-~~~yD~VIIDTpg~l 203 (320)
T 1zu4_A 183 AIKKAK-EQNYDLLLIDTAGRL 203 (320)
T ss_dssp HHHHHH-HTTCSEEEEECCCCG
T ss_pred HHHHHH-hcCCCEEEEcCCCcc
Confidence 333322 357899999965433
No 109
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.88 E-value=8.6e-05 Score=67.06 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=48.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|.++...++|+||||+|||++|..+|... +.++++++...-... ..|. ......+.+.....+.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~----~~g~--------~~~~i~~~f~~a~~~~~ 96 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAAEIIR 96 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC-------H--------HHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc----cCch--------hHHHHHHHHHHHHHHHh
Confidence 55666789999999999999999998877 567777774211000 0000 00001122333333335
Q ss_pred cCCccEEeehhHhhhcc
Q 021239 196 SGSIDVIVVDSVAALIP 212 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~ 212 (315)
...+.+|+||.+..+.+
T Consensus 97 ~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TSSCCCEEEECCC----
T ss_pred cCCCeEEEEechhhhcC
Confidence 66789999999988774
No 110
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.87 E-value=4.8e-05 Score=68.92 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=57.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH------HHHHcCCCCCCeEEeCCCCHHHHH-HHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS------LAEAMGIDAENLLIAQPDSAENLL-SVVD 191 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~------~~~~~g~~~~~l~i~~~~~~e~~~-~~i~ 191 (315)
+|.++.+.|++|+||||++..++......+++|++++.+...... +.+..+++. +......+..++. ..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999999998889999999987654321 123334321 1001122334443 2333
Q ss_pred HHHHcCCccEEeehhHh
Q 021239 192 TLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~ 208 (315)
.+ ...++++|+||...
T Consensus 175 ~~-~~~~~D~viiDtpp 190 (295)
T 1ls1_A 175 KA-RLEARDLILVDTAG 190 (295)
T ss_dssp HH-HHHTCCEEEEECCC
T ss_pred HH-HhCCCCEEEEeCCC
Confidence 33 22468999999763
No 111
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.87 E-value=0.00018 Score=69.87 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHhhcCC---CC----CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChH------HHHHcCCCC
Q 021239 106 LKLDLALGIG---GL----PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS------LAEAMGIDA 172 (315)
Q Consensus 106 ~~LD~~l~~G---Gl----~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~------~~~~~g~~~ 172 (315)
.+|..+++ + ++ .+..++.|+|++|+||||++..++..+...|.+|++++.+...... ...+.+++.
T Consensus 81 ~eL~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 81 KELVKLVD-PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp HHHHHHHC-CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhc-cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 45667776 4 23 2355899999999999999999999998889999999987644321 233344431
Q ss_pred CCeEEeCCCCHHHHH-HHHHHHHHcCCccEEeehhHhhh
Q 021239 173 ENLLIAQPDSAENLL-SVVDTLTKSGSIDVIVVDSVAAL 210 (315)
Q Consensus 173 ~~l~i~~~~~~e~~~-~~i~~l~~~~~~~lVVIDsl~~l 210 (315)
-. .....+..++. +.+..+ ...+.++++||....+
T Consensus 160 ~~--~~~~~dp~~i~~~al~~~-~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 160 YG--SYTEMDPVIIASEGVEKF-KNENFEIIIVDTSGRH 195 (504)
T ss_dssp EE--CCCCSCHHHHHHHHHHHH-HHTTCCEEEEEECCCC
T ss_pred Ec--cCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCc
Confidence 10 01112233332 233332 2357889999976644
No 112
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.87 E-value=1.7e-05 Score=75.78 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=43.6
Q ss_pred HHHHHhhcCCC---C--CCC--cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 106 LKLDLALGIGG---L--PKG--RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 106 ~~LD~~l~~GG---l--~~G--~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.+|..+++ ++ + .++ .++.|+|++|+||||++..++..+...|.+|++++.+...
T Consensus 79 ~~l~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 79 EELVKLLG-EEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp HHHHHHHC-CSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred HHHHHHhC-CCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 34666776 54 3 223 5899999999999999999999999889999999987543
No 113
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.83 E-value=0.00013 Score=68.52 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
.++..++|+||||+|||++|..++... +..+++++...-.... ....+.....+.......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~----------------~g~~~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY----------------VGEGEKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-----------------------CHHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc----------------cchHHHHHHHHHHHHHhc
Confidence 356789999999999999999886553 6677777764322210 011123333333334456
Q ss_pred CccEEeehhHhhhcc
Q 021239 198 SIDVIVVDSVAALIP 212 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~ 212 (315)
.+.+|+||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 788999999998874
No 114
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.83 E-value=8.1e-05 Score=62.78 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=43.7
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCC--eEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH-----
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGG--YCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK----- 195 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~--~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~----- 195 (315)
++|+||+|+|||+++..++......+. ..+.++.... ...+.+...+.....
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE---------------------RGIDVVRHKIKEFARTAPIG 99 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT---------------------TCHHHHHHHHHHHHTSCCST
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc---------------------cChHHHHHHHHHHhcccCCC
Confidence 999999999999999999887754432 2333443221 122333333443332
Q ss_pred cCCccEEeehhHhhhc
Q 021239 196 SGSIDVIVVDSVAALI 211 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~ 211 (315)
..+..+|+||.+..+.
T Consensus 100 ~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 100 GAPFKIIFLDEADALT 115 (226)
T ss_dssp TCSCEEEEEETGGGSC
T ss_pred ccCceEEEEeChhhcC
Confidence 2467899999988775
No 115
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.83 E-value=0.00016 Score=61.45 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=61.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC-C---hHHHHHcCCCCC----CeEEeCCC------CHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D---PSLAEAMGIDAE----NLLIAQPD------SAEN 185 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~-~---~~~~~~~g~~~~----~l~i~~~~------~~e~ 185 (315)
...+.+++.+|.||||.|+.++..++..|.+|+++.+-... . ....+.+++... .+...... ....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 34788889999999999999999999999999999876542 1 134555542211 11111111 1122
Q ss_pred HHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 186 LLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 186 ~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
.++.+.+.+.+..+++||+|.++...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al 133 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMV 133 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 33445555666789999999998765
No 116
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.82 E-value=0.00011 Score=68.15 Aligned_cols=76 Identities=13% Similarity=0.261 Sum_probs=50.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
.+...++|+||||+|||++|..++... +..+++++...-... .....+.....+.......
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK----------------WVGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----------------STTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----------------ccchHHHHHHHHHHHHHhc
Confidence 456679999999999999999987654 567777775332111 0111233333333334456
Q ss_pred CccEEeehhHhhhcc
Q 021239 198 SIDVIVVDSVAALIP 212 (315)
Q Consensus 198 ~~~lVVIDsl~~l~~ 212 (315)
.+.+|+||.+..+..
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 789999999999874
No 117
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.82 E-value=7.3e-05 Score=71.13 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=58.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCCCeEEe-CCCCHHHHHH-HH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIA-QPDSAENLLS-VV 190 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~~l~i~-~~~~~e~~~~-~i 190 (315)
++.++.++|++|+||||++..++......|++|++++.+..... .+.+..|++. +.. ...+..++.. .+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v---~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE---EecCCCCCHHHHHHHHH
Confidence 57899999999999999999999999988999999998754432 1233445431 111 1123344432 33
Q ss_pred HHHHHcCCccEEeehhHhh
Q 021239 191 DTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 191 ~~l~~~~~~~lVVIDsl~~ 209 (315)
..+ +..+.++|+||....
T Consensus 174 ~~~-~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 174 EKA-RLEARDLILVDTAGR 191 (425)
T ss_dssp HHH-HHTTCSEEEEECCCC
T ss_pred HHH-HHCCCCEEEEcCCCc
Confidence 332 335789999997543
No 118
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.81 E-value=8.5e-05 Score=73.89 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCC------eEEEEecCCCCC------hHHH-----------------
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG------YCAYLDVENALD------PSLA----------------- 165 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~------~v~~i~~E~~~~------~~~~----------------- 165 (315)
|-+.+|+++.|.||+|+|||||+..++.......+ .+.|+.-+.... ....
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 452 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVV 452 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHH
Confidence 45777899999999999999999888765443222 355554332111 0111
Q ss_pred HHcCCCC-CCeEEeCCCCHHH-HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHH
Q 021239 166 EAMGIDA-ENLLIAQPDSAEN-LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (315)
Q Consensus 166 ~~~g~~~-~~l~i~~~~~~e~-~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~ 243 (315)
+.+++.. .+-.+..-.-.+. -+.+.+.+ ..+|+++++|..+.-.. ......+.+.++++.
T Consensus 453 ~~l~l~~~~~~~~~~LSGGqkQRv~iAraL--~~~p~lLlLDEPT~gLD-------------~~~~~~i~~ll~~l~--- 514 (608)
T 3j16_B 453 KPLRIDDIIDQEVQHLSGGELQRVAIVLAL--GIPADIYLIDEPSAYLD-------------SEQRIICSKVIRRFI--- 514 (608)
T ss_dssp HHHTSTTTSSSBSSSCCHHHHHHHHHHHHT--TSCCSEEEECCTTTTCC-------------HHHHHHHHHHHHHHH---
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECCCCCCC-------------HHHHHHHHHHHHHHH---
Confidence 1112110 0001111111222 22333333 24799999998776552 122333555555553
Q ss_pred hccCcEEEEEecccccc
Q 021239 244 CQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 244 ~~~~i~VI~inq~~~~~ 260 (315)
++.|.|||+++|-....
T Consensus 515 ~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 515 LHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp HHHTCEEEEECSCHHHH
T ss_pred HhCCCEEEEEeCCHHHH
Confidence 67799999999976543
No 119
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.80 E-value=5.1e-06 Score=74.26 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I 64 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 367999999999999999999988765543333343
No 120
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.80 E-value=4.2e-05 Score=75.06 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCC-------eEEEEecCCCCC--h---HHHHHc--CC-CCC--------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-------YCAYLDVENALD--P---SLAEAM--GI-DAE-------- 173 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~-------~v~~i~~E~~~~--~---~~~~~~--g~-~~~-------- 173 (315)
+++|+++.|.||+|+|||||+..++.......+ .+.|+.-+.... . ...... .. ...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 578999999999999999999888765543333 344544322111 0 111111 00 000
Q ss_pred -Ce--------EEeCCCCHH-HHHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHH
Q 021239 174 -NL--------LIAQPDSAE-NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (315)
Q Consensus 174 -~l--------~i~~~~~~e-~~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~ 243 (315)
.+ .+..-.-.+ +-+.+.+.++ .+|+++++|..+.... ......+.+.++++.
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~--~~p~lLlLDEPT~gLD-------------~~~~~~i~~~l~~l~--- 432 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLA--KEADLYVLDQPSSYLD-------------VEERYIVAKAIKRVT--- 432 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH--SCCSEEEEESTTTTCC-------------HHHHHHHHHHHHHHH---
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHH--cCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---
Confidence 00 000111122 2333444443 4799999998876652 122333555555554
Q ss_pred hccCcEEEEEecccccc
Q 021239 244 CQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 244 ~~~~i~VI~inq~~~~~ 260 (315)
++.+.+||+++|-....
T Consensus 433 ~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 433 RERKAVTFIIDHDLSIH 449 (538)
T ss_dssp HHTTCEEEEECSCHHHH
T ss_pred HhCCCEEEEEeCCHHHH
Confidence 77899999999976543
No 121
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.79 E-value=5.6e-05 Score=74.87 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 36899999999999999999998887766555555543
No 122
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.79 E-value=6.4e-05 Score=70.41 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCCh--HHHHHcCCCCC
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDP--SLAEAMGIDAE 173 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~--~~~~~~g~~~~ 173 (315)
.+.+.||+..+|-++. +.+|.-+.|.|++|+|||+|+..++..+.+. +-.|+|....+.... ...+.+. .
T Consensus 155 ~~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~---~ 228 (422)
T 3ice_A 155 GSTEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK---G 228 (422)
T ss_dssp CCTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCS---S
T ss_pred CCcccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhC---e
Confidence 3678999999999987 7899999999999999999999998877654 335777665544433 1222221 1
Q ss_pred CeEEeCCC-CHH-------HHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 174 NLLIAQPD-SAE-------NLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 174 ~l~i~~~~-~~e-------~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
-+.....+ ++. -.+...+.+.+++.--+|++|+++.+.
T Consensus 229 ~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 229 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHH
Confidence 12222222 222 122334455566666788999999876
No 123
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.79 E-value=6.7e-05 Score=72.78 Aligned_cols=118 Identities=21% Similarity=0.312 Sum_probs=65.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|.++..-++|+||||+|||++|..++... +.+.+++++..-... + ....+..+..+-....
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~------------~----~g~~~~~~~~~f~~A~ 294 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK------------L----AGESESNLRKAFEEAE 294 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTS------------C----TTHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhh------------h----cchhHHHHHHHHHHHH
Confidence 45666779999999999999999886654 667777774211100 0 0111111121222234
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRF 258 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~ 258 (315)
...+.+++||.+..+.+.... . ......+...++++.+...-...++.||.+++...
T Consensus 295 ~~~p~iLfLDEId~l~~~~~~--~----~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 295 KNAPAIIFIDELDAIAPKREK--T----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HTCSEEEEEESHHHHCBCTTS--C----CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred hcCCcEEEecchhhhcccccc--c----cchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 457889999999999853211 1 11122233344444443332344667776665443
No 124
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.79 E-value=8e-05 Score=62.83 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=58.1
Q ss_pred EEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCcc
Q 021239 122 IVEIY-GREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (315)
Q Consensus 122 i~~i~-G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~ 200 (315)
++.|+ +..|+||||++.++|..++..|.+|+++|++..... ...++....++.+..... +.+...+..+. ..++
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSL--TNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH--HHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH--HHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 44555 668899999999999999999999999999854332 233344444555555444 55555555553 3589
Q ss_pred EEeehhHhhh
Q 021239 201 VIVVDSVAAL 210 (315)
Q Consensus 201 lVVIDsl~~l 210 (315)
+||||.-..+
T Consensus 78 ~viiD~~~~~ 87 (206)
T 4dzz_A 78 FAIVDGAGSL 87 (206)
T ss_dssp EEEEECCSSS
T ss_pred EEEEECCCCC
Confidence 9999975433
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.78 E-value=1.8e-05 Score=73.74 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChHHHHHcCCCCCCeEEeC---CCCHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEAMGIDAENLLIAQ---PDSAENLLSVVDTL 193 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~---~~~~e~~~~~i~~l 193 (315)
.+|.+++|.||+||||||++..++...... ++.++.+. +..+.. .....-.+.+ ......+.+.+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e--d~~e~~------~~~~~~~v~q~~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE--DPIEFV------HESKKCLVNQREVHRDTLGFSEALRSA 192 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE--SSCCSC------CCCSSSEEEEEEBTTTBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc--CcHHhh------hhccccceeeeeeccccCCHHHHHHHH
Confidence 567799999999999999999888877665 55654443 322210 0000001111 00111233344444
Q ss_pred HHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
+. .+|+++++|.+... +..+.+.++ .+.|.+|+++.|..+..
T Consensus 193 L~-~~PdvillDEp~d~--------------------e~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LR-EDPDIILVGEMRDL--------------------ETIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TT-SCCSEEEESCCCSH--------------------HHHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred hh-hCcCEEecCCCCCH--------------------HHHHHHHHH----HhcCCEEEEEEccChHH
Confidence 43 58999999977511 112222222 34699999999987654
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.77 E-value=0.00015 Score=65.20 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcC----CeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLG----GYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTL 193 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g----~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l 193 (315)
.++..++|+||||+|||+++..++..+...+ .++++++...-... + ........ ...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~------------~---~g~~~~~~----~~~ 125 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQ------------Y---IGHTAPKT----KEV 125 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCS------------S---TTCHHHHH----HHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhh------------c---ccccHHHH----HHH
Confidence 4566799999999999999999988876543 36777764322110 0 00011122 222
Q ss_pred HHcCCccEEeehhHhhhcc
Q 021239 194 TKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 194 ~~~~~~~lVVIDsl~~l~~ 212 (315)
+......+++||.+..+..
T Consensus 126 ~~~~~~~vl~iDEid~l~~ 144 (309)
T 3syl_A 126 LKRAMGGVLFIDEAYYLYR 144 (309)
T ss_dssp HHHHTTSEEEEETGGGSCC
T ss_pred HHhcCCCEEEEEChhhhcc
Confidence 2222568999999998873
No 127
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.75 E-value=1.7e-05 Score=77.97 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=69.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcC------CeEEEEecCCCCCh-----HHH-----HH-------------
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLG------GYCAYLDVENALDP-----SLA-----EA------------- 167 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g------~~v~~i~~E~~~~~-----~~~-----~~------------- 167 (315)
+++|+++.|.||+|+|||||+..++....... .++.|+.-+..... +.. ..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 36899999999999999999988876544322 24566654432210 110 00
Q ss_pred cCCCC-CCeEEeCCCCHHH-HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhc
Q 021239 168 MGIDA-ENLLIAQPDSAEN-LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ 245 (315)
Q Consensus 168 ~g~~~-~~l~i~~~~~~e~-~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~ 245 (315)
+|+.. .+-.+..-...+. -+.+.+.++ .+++++++|..+.-.. ......+.+.++++ +++
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~--~~p~lLlLDEPt~~LD-------------~~~~~~i~~~l~~l---~~~ 450 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLL--RDADIYLLDEPSAYLD-------------VEQRLAVSRAIRHL---MEK 450 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHT--SCCSEEEEECTTTTCC-------------HHHHHHHHHHHHHH---HHH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHH--hCCCEEEEeCCcccCC-------------HHHHHHHHHHHHHH---HHh
Confidence 01100 0000111111222 223333332 4789999998776552 12223355555554 367
Q ss_pred cCcEEEEEecccccc
Q 021239 246 SHTLIIFLNQVRFSA 260 (315)
Q Consensus 246 ~~i~VI~inq~~~~~ 260 (315)
.+.+||+++|-....
T Consensus 451 ~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 451 NEKTALVVEHDVLMI 465 (538)
T ss_dssp HTCEEEEECSCHHHH
T ss_pred CCCEEEEEeCCHHHH
Confidence 799999999976544
No 128
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.75 E-value=6.7e-05 Score=66.28 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=39.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHH--HHhcCCeEEEEecCCCC--Ch-HHHH-HcCCCCCCeEEeCCCCHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKE--AQKLGGYCAYLDVENAL--DP-SLAE-AMGIDAENLLIAQPDSAEN 185 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~--~~~~g~~v~~i~~E~~~--~~-~~~~-~~g~~~~~l~i~~~~~~e~ 185 (315)
+++|+++.|.||+|+|||||+..++.. .....+.+ +++..... .. .+.+ .+++.+++..+....+..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I-~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI-LLDGENILELSPDERARKGLFLAFQYPVEVPGVTIAN 99 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE-EETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHH
Confidence 679999999999999999999888764 22233444 44432211 11 2222 3566666544433334433
No 129
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.74 E-value=0.00012 Score=65.83 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
...++|+||||+|||+++..++......+.++++++...-... ...+-+|......-.... ..+ ...+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~----~~~~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQL----TEAVRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHH----HHHHHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chH----HHHHHhCC
Confidence 4589999999999999999999888777778888887654433 233444543321111000 112 22333345
Q ss_pred ccEEeehhHhhhc
Q 021239 199 IDVIVVDSVAALI 211 (315)
Q Consensus 199 ~~lVVIDsl~~l~ 211 (315)
..+++||.+..+.
T Consensus 120 ~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 120 YSVILFDAIEKAH 132 (311)
T ss_dssp SEEEEEETGGGSC
T ss_pred CeEEEEeChhhcC
Confidence 6899999997664
No 130
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.74 E-value=0.0001 Score=73.42 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcC------CeEEEEecCCCCCh-----HH------------------HHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLG------GYCAYLDVENALDP-----SL------------------AEA 167 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g------~~v~~i~~E~~~~~-----~~------------------~~~ 167 (315)
+++|+++.|.||+|+|||||+..++....... .++.|+.-+..... +. ++.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 46899999999999999999988876543322 24556654432210 00 011
Q ss_pred cCCCC-CCeEEeCCCCHHH-HHHHHHHHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhc
Q 021239 168 MGIDA-ENLLIAQPDSAEN-LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ 245 (315)
Q Consensus 168 ~g~~~-~~l~i~~~~~~e~-~~~~i~~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~ 245 (315)
+|+.. .+-.+..-...+. -+.+.+.++ .+++++++|..+.... ......+.+.++++. ++
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~--~~p~lLlLDEPt~~LD-------------~~~~~~l~~~l~~l~---~~ 520 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLL--RDADIYLLDEPSAYLD-------------VEQRLAVSRAIRHLM---EK 520 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHT--SCCSEEEEECTTTTCC-------------HHHHHHHHHHHHHHH---HH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHH--hCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---Hh
Confidence 12210 0001111111222 233333332 4789999998776652 122333555555553 67
Q ss_pred cCcEEEEEecccccc
Q 021239 246 SHTLIIFLNQVRFSA 260 (315)
Q Consensus 246 ~~i~VI~inq~~~~~ 260 (315)
.+.+||+++|.....
T Consensus 521 ~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 521 NEKTALVVEHDVLMI 535 (607)
T ss_dssp TTCEEEEECSCHHHH
T ss_pred CCCEEEEEeCCHHHH
Confidence 799999999975443
No 131
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.74 E-value=2.2e-05 Score=75.19 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=49.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
|+..+..-++|+||||+|||++|..++... .+.++++++...-... ..|. .......++.. .
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~----a 223 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQL----A 223 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------------------CCCTHHHHHHH----H
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHH----H
Confidence 345667789999999999999999988765 2456666665322110 0110 01122333332 2
Q ss_pred HcCCccEEeehhHhhhcc
Q 021239 195 KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~ 212 (315)
....+.+|+||.+..+.+
T Consensus 224 ~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 224 RENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp HHSCSEEEEESCTTTTCC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 345789999999998874
No 132
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.73 E-value=6e-05 Score=74.65 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
+++|+.+.|.||+|+|||||+..++.......+.+ +++
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~~ 403 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMD 403 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EET
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE-EEC
Confidence 67999999999999999999988776554433443 444
No 133
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.70 E-value=4.6e-05 Score=75.79 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+.+.|.||+|+|||||+..++.......+.+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 78999999999999999999987766554433333
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.70 E-value=0.00013 Score=71.61 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|+++.|.||+|+|||||+..++...
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999998887644
No 135
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.70 E-value=0.00013 Score=69.69 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=56.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEecCCCCChH------HHHHcCCCCCCeEEeCC---CCHHHHH-H
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS------LAEAMGIDAENLLIAQP---DSAENLL-S 188 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~~~~~------~~~~~g~~~~~l~i~~~---~~~e~~~-~ 188 (315)
..++.++|++|+||||++..+|..++.. |.+|++++++...... +.+..+++ +... .+..++. .
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~-----v~~~~~~~dp~~i~~~ 174 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVD-----FFPSDVGQKPVDIVNA 174 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCE-----ECCCCSSSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCee-----EEeCCCCCCHHHHHHH
Confidence 4688899999999999999999999998 9999999998654431 23333432 2221 2334442 2
Q ss_pred HHHHHHHcCCccEEeehhHh
Q 021239 189 VVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 189 ~i~~l~~~~~~~lVVIDsl~ 208 (315)
.+..+ ...+.++|+||...
T Consensus 175 ~l~~~-~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 175 ALKEA-KLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHH-HHTTCSEEEEECCC
T ss_pred HHHHH-HhCCCCEEEEECCC
Confidence 33332 33578999999853
No 136
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.69 E-value=3.6e-05 Score=61.95 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=29.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.+.-++|+||||+|||++|..++......+.+.+ ++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 4456899999999999999988776655566666 6654
No 137
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.69 E-value=0.00025 Score=68.25 Aligned_cols=114 Identities=19% Similarity=0.331 Sum_probs=75.2
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g 169 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++++..+.+....+..|+|....+.... ...+.+ |
T Consensus 140 ~~v~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g 216 (513)
T 3oaa_A 140 QSVDQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHG 216 (513)
T ss_dssp CCCCCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHS
T ss_pred CCcCcccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcC
Confidence 3456889999999999987 6789999999999999999988777666555667888877665443 222222 2
Q ss_pred -CCCCCeEEeCCC-C-HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 -IDAENLLIAQPD-S-AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 -~~~~~l~i~~~~-~-~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
++-.-+.....+ + ..+. ....+.+..++.--++++|+++.+.
T Consensus 217 ~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 217 ALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQA 267 (513)
T ss_dssp CSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 221122233322 2 2222 2233445556666799999998765
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.68 E-value=0.0001 Score=68.37 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=57.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc--------CCeEEEEecCCCC-Ch-----HHHHHc-CCCCCCeEEeCCCCHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL--------GGYCAYLDVENAL-DP-----SLAEAM-GIDAENLLIAQPDSAE 184 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~--------g~~v~~i~~E~~~-~~-----~~~~~~-g~~~~~l~i~~~~~~e 184 (315)
+..++|+||||+|||+++..++...... +..++|++..... .. .....+ |..... ...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK----HGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS----SSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC----CCCCHH
Confidence 4589999999999999999998887654 7788999864432 22 123333 332111 112234
Q ss_pred HHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 185 NLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 185 ~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
+++..+...+...++ +|+||.+..+.
T Consensus 121 ~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 121 EYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 555655555554445 99999999886
No 139
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.68 E-value=0.00031 Score=67.87 Aligned_cols=113 Identities=18% Similarity=0.301 Sum_probs=73.8
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh--------cCCeEEEEecCCCCCh--HHH
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK--------LGGYCAYLDVENALDP--SLA 165 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~--------~g~~v~~i~~E~~~~~--~~~ 165 (315)
...+.+.||+..+|.++. +-+|.-..|.|++|+|||++++..+.+... .+..|+|....+.... ...
T Consensus 141 ~v~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~ 217 (510)
T 2ck3_A 141 SVREPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLV 217 (510)
T ss_dssp CCCSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHH
T ss_pred ccCccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHH
Confidence 456789999999999987 778999999999999999998766666555 4456888877665543 222
Q ss_pred HHc---C-CCCCCeEEeCCCC--HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 166 EAM---G-IDAENLLIAQPDS--AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 166 ~~~---g-~~~~~l~i~~~~~--~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
+.+ | ++-.-+.....+. .... ....+.+..++.--++++|+++.+.
T Consensus 218 ~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 218 KRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHHHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence 222 2 1111222333322 2222 2333445555566799999998775
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.67 E-value=0.00013 Score=65.22 Aligned_cols=75 Identities=31% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHc
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~ 196 (315)
+++| ++|+||||+|||||+..++... +...++++...-... .....+..+..+-+....
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLNM----------------YVGESERAVRQVFQRAKN 101 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHh
Confidence 3455 9999999999999999887764 334566664321110 000112222222222234
Q ss_pred CCccEEeehhHhhhcc
Q 021239 197 GSIDVIVVDSVAALIP 212 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~ 212 (315)
..+.++++|.+..+..
T Consensus 102 ~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCP 117 (274)
T ss_dssp TCSEEEEEETCTTTCC
T ss_pred cCCCeEeeehhhhhhc
Confidence 5688999999988763
No 141
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.67 E-value=0.00017 Score=66.01 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=37.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.++.+.|..|+||||++.++|..+++.|.+|+++|++...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~ 54 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAH 54 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCc
Confidence 6888899999999999999999999999999999998743
No 142
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.66 E-value=0.00025 Score=68.38 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=75.3
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHH---cC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEA---MG 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~---~g 169 (315)
....+.+.||+..+|.++. +-+|.-..|.|++|+|||++++..+.+....+..|+|....+.... ...+. -|
T Consensus 140 ~~v~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g 216 (502)
T 2qe7_A 140 KSVHEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHD 216 (502)
T ss_dssp CCCCSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred cCCCCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCC
Confidence 3456789999999999987 7789999999999999999988777776655556788877665543 22222 22
Q ss_pred -CCCCCeEEeCCCC--HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 -IDAENLLIAQPDS--AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 -~~~~~l~i~~~~~--~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
++-.-+.....+. .... ....+.+..++.--++++|+++.+.
T Consensus 217 ~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 217 ALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp CSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 2211223333322 2222 2334445555566799999998775
No 143
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.64 E-value=4.7e-05 Score=75.40 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|+|||||+..++.......+.+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 68999999999999999999987765554433333
No 144
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.63 E-value=2.5e-05 Score=79.88 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
.|+.+..-++++||||+|||.+|..+|.++ +.+.+.++. ...... .....+..+..+-...
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~-----~~l~s~-----------~vGese~~vr~lF~~A 566 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG-----PELLTM-----------WFGESEANVREIFDKA 566 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCH-----HHHHTT-----------TCSSCHHHHHHHHHHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEecc-----chhhcc-----------ccchHHHHHHHHHHHH
Confidence 577777789999999999999999887766 333333321 011110 0112244444444445
Q ss_pred HcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 021239 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLN 254 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~in 254 (315)
+...|.+|+||.+..+.+.-.... . + ......+.+.++|..+..+-...++.||..+
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~-~-~-~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNI-G-D-GGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred HHcCCceeechhhhHHhhccCCCC-C-C-CchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 567899999999999984321110 0 0 0012234456666666544344566666433
No 145
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.61 E-value=0.00023 Score=68.71 Aligned_cols=113 Identities=19% Similarity=0.364 Sum_probs=74.3
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C-
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G- 169 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g- 169 (315)
...+.+.||+..+|.++. +-+|.-..|.|++|+|||++++..+.+....+..|+|....+.... ...+.+ |
T Consensus 154 ~v~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~ 230 (515)
T 2r9v_A 154 PVDTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGA 230 (515)
T ss_dssp CCCSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTG
T ss_pred CCCcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCC
Confidence 456789999999999987 7799999999999999999988777776655556788877665543 222222 1
Q ss_pred CCCCCeEEeCCCC--HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIAQPDS--AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~~~~~--~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
++-.-+.....+. ...+ ....+.+..++.--++++||++.+.
T Consensus 231 m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 231 MEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHA 280 (515)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence 1111122333322 2222 2333445555666799999998775
No 146
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.60 E-value=4.2e-05 Score=72.07 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+++|+++.|.||+|||||||+..++.-.. ..+. ++++.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~-I~i~G 81 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE-IQIDG 81 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEE-EEESS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeE-EEECC
Confidence 67999999999999999999988876543 3333 44544
No 147
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.57 E-value=0.00013 Score=74.88 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=65.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
|+++|..++|+||||+|||+++..++... +...++++...-.. ......+..+..+-+...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~~----------------~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS----------------KLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHSS----------------SSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhhh----------------hhhhhHHHHHHHHHHHHH
Confidence 68899999999999999999999886654 45566666311110 000112222222222223
Q ss_pred cCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 196 ~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+.++++|.+..+.+..... ......+...+.+..+.......++.+|.+++....+
T Consensus 295 ~~~p~il~iDEid~l~~~~~~~------~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREKT------HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSCC------CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hcCCcEEEeccHHHhhhccccc------cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 3468899999999887422111 1112222222223222222224567777776654444
No 148
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.57 E-value=9.5e-05 Score=73.42 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
+++|+++.|.||+|+|||||+..++.......+.+ +++
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~~ 404 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI-SLD 404 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE-EET
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EEC
Confidence 67999999999999999999988776554333333 344
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.57 E-value=4.6e-05 Score=63.69 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
++++|.++.|.|+||+||||++..++.. .+...++++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 5789999999999999999999988764 34445677653
No 150
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.57 E-value=0.00054 Score=63.42 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=43.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGID 171 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~ 171 (315)
.-+.-.++.+.|..|+||||++.++|..++..|.+|+.+|++.. ......+|.+
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~~ 75 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQE 75 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCSC
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCCC
Confidence 33455678888999999999999999999999999999999884 3455556654
No 151
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.57 E-value=0.00011 Score=66.58 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=38.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.+.++.|+|..|+||||++.++|..+++.|.+|+.+|++...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 567888889999999999999999999999999999998654
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.56 E-value=0.00024 Score=66.32 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=59.1
Q ss_pred CCcEEEE--EecCCCChhHHHHHHHHHHHhc------CCeEEEEecCCCCCh-----HHHHHcCCCCCCeEEeCCCCHHH
Q 021239 119 KGRIVEI--YGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAEN 185 (315)
Q Consensus 119 ~G~i~~i--~G~~GsGKTtlal~la~~~~~~------g~~v~~i~~E~~~~~-----~~~~~~g~~~~~l~i~~~~~~e~ 185 (315)
.+..++| +|++|+|||+++..++...... +..++|++....... ...+.+|..... ...+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV----RGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC----TTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHH
Confidence 4568888 9999999999999998876543 557889986443332 234455543210 1223555
Q ss_pred HHHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 186 LLSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 186 ~~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
+...+...+. ..++-+||||.+..+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 5655555443 3567899999999876
No 153
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.56 E-value=3.9e-05 Score=76.14 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
+++|+++.|.||+|+|||||+..++.......+. ++++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~ 403 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-VEVD 403 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE-EEES
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE-EEEC
Confidence 6799999999999999999998776555433333 3444
No 154
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.56 E-value=5.8e-05 Score=74.10 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++|+++.|.||+|+|||||+..++...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999998887644
No 155
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.56 E-value=0.00053 Score=65.76 Aligned_cols=113 Identities=22% Similarity=0.374 Sum_probs=75.6
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCCh--HHHHH---cC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDP--SLAEA---MG 169 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~--~~~~~---~g 169 (315)
...+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+..++.+.++ .+.-++|....+.... +..+. .+
T Consensus 132 ~~~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~ 208 (482)
T 2ck3_D 132 VEQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 208 (482)
T ss_dssp CCCCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHT
T ss_pred ccCcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhcc
Confidence 456889999999999987 779999999999999999999999998654 3467777766655443 22222 22
Q ss_pred -CCC-----CCe-EEeCCCC--HH------HHHHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 170 -IDA-----ENL-LIAQPDS--AE------NLLSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 -~~~-----~~l-~i~~~~~--~e------~~~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
+++ .-+ .+...+. .. --....+.+.. ++.--++++||++.+.
T Consensus 209 ~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A 266 (482)
T 2ck3_D 209 VINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 266 (482)
T ss_dssp SSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHH
T ss_pred ccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 331 122 2333322 11 12233445555 5666789999998775
No 156
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.54 E-value=3.6e-05 Score=76.57 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+++|+++.|.||+|+|||||+..++....
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 46899999999999999999988876543
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=0.0002 Score=65.71 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.5
Q ss_pred EEEEecCCCChhHHHHHHHHHHHh
Q 021239 123 VEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
++|+||+|+||||++..++.....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999886644
No 158
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.53 E-value=0.00019 Score=71.38 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|+++.|.||+|+|||||+..++...
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5799999999999999999998887544
No 159
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.52 E-value=0.00026 Score=71.29 Aligned_cols=22 Identities=41% Similarity=0.807 Sum_probs=20.2
Q ss_pred CCCCCcEEEEEecCCCChhHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLA 137 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtla 137 (315)
-+++|+++.|.||+|+|||||+
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 3679999999999999999996
No 160
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.52 E-value=0.00065 Score=65.42 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=75.7
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCCh--HHHHH---c
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDP--SLAEA---M 168 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~--~~~~~---~ 168 (315)
....+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+.++ .+..++|....+.... +..+. .
T Consensus 143 ~~~~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 143 DTKLSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCCCCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred cccccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3457889999999999987 778999999999999999999999998654 3567778776665544 22222 2
Q ss_pred C-CCC------CCeE-EeCCCC--HH------HHHHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 169 G-IDA------ENLL-IAQPDS--AE------NLLSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 169 g-~~~------~~l~-i~~~~~--~e------~~~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
| +++ .-+. +...+. .. -.....+.+.. ++.--++++||++.+.
T Consensus 220 ~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A 279 (498)
T 1fx0_B 220 GVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFV 279 (498)
T ss_dssp TSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHH
T ss_pred cccccccccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 2 331 1222 222222 11 12233444544 4555688999998776
No 161
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.52 E-value=0.00047 Score=66.14 Aligned_cols=114 Identities=18% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCCh--HHHHHc--C
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDP--SLAEAM--G 169 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~--~~~~~~--g 169 (315)
....+.+.||+..+|.+.. +-+|..+.|+|++|+|||+|+..++.+... .+.-++|....+.... ...+.+ +
T Consensus 129 ~~~~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~ 205 (473)
T 1sky_E 129 ATEVEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDS 205 (473)
T ss_dssp CCSCCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHT
T ss_pred cccCccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhc
Confidence 3556789999999999876 668899999999999999999999988764 4556666654333322 222212 1
Q ss_pred CCCCC--eEEeCCC-C-HHHH------HHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 170 IDAEN--LLIAQPD-S-AENL------LSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~--l~i~~~~-~-~e~~------~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
-..++ +.+...+ + .... ....+.+.. ++.--++++|+++.+.
T Consensus 206 ~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a 258 (473)
T 1sky_E 206 GVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFT 258 (473)
T ss_dssp SGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHH
T ss_pred CCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 01112 2222222 1 1111 233444444 4566799999998775
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.51 E-value=0.00018 Score=63.84 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHH--
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTL-- 193 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l-- 193 (315)
+.++...++|+||||+|||++|..++... +.+.++++..... +| .........+...
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~~-------~g-----------~~~~~~~~~~~~~~~ 118 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKM-------IG-----------FSETAKCQAMKKIFD 118 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGC-------TT-----------CCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHHh-------cC-----------CchHHHHHHHHHHHH
Confidence 34566789999999999999999988764 4556666532100 01 0111111122222
Q ss_pred -HHcCCccEEeehhHhhhcc
Q 021239 194 -TKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 194 -~~~~~~~lVVIDsl~~l~~ 212 (315)
.....+.+|+||.+..+..
T Consensus 119 ~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 119 DAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp HHHTSSEEEEEECCHHHHTT
T ss_pred HHHhcCCcEEEEEChhhhhc
Confidence 2235689999999999864
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=0.00017 Score=63.32 Aligned_cols=35 Identities=37% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
-+++| ++|+||||+||||++..++.... ...++++
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~ 81 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITAS 81 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEee
Confidence 34556 99999999999999998876552 3455554
No 164
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.50 E-value=0.00026 Score=62.29 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=58.6
Q ss_pred CCcEEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCC--------------------CCeEE
Q 021239 119 KGRIVEIY-GREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDA--------------------ENLLI 177 (315)
Q Consensus 119 ~G~i~~i~-G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~--------------------~~l~i 177 (315)
.+.++.++ +..|+||||++.++|..++..|.+|+++|++.... ....+|... .++.+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~--~~~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~v 82 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN--ATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHL 82 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHTTCCCSCCHHHHHTTCCGGGTCEEETTEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC--HHHHhCCCCCCCHHHHHcCCCHHHHccccCCEEE
Confidence 45677776 56899999999999999999999999999986532 233344321 34555
Q ss_pred eCCCC-HHHH----H---HHHHHHHHcCCccEEeehhHhh
Q 021239 178 AQPDS-AENL----L---SVVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 178 ~~~~~-~e~~----~---~~i~~l~~~~~~~lVVIDsl~~ 209 (315)
..... .... . ..+.+.++...+++||||.-..
T Consensus 83 lp~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~ 122 (257)
T 1wcv_1 83 LPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPS 122 (257)
T ss_dssp ECCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSS
T ss_pred EeCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCC
Confidence 54432 2211 1 3444544436789999997654
No 165
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.49 E-value=0.00043 Score=62.70 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCcEEEEEec-CCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 119 KGRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 119 ~G~i~~i~G~-~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
++.++.|+++ +|+||||++.++|..++..|.+|++||.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4568888886 8999999999999999999999999999875
No 166
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.48 E-value=0.00019 Score=69.25 Aligned_cols=113 Identities=17% Similarity=0.266 Sum_probs=75.6
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHc---C-
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAM---G- 169 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~---g- 169 (315)
...+.+.||+..+|.++. +-+|.-..|.|++|+|||++++..+.+....+..|+|....+.... ...+.+ |
T Consensus 142 ~v~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~ 218 (507)
T 1fx0_A 142 SVYEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGA 218 (507)
T ss_dssp CCCSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTG
T ss_pred ccCCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCc
Confidence 456789999999999987 6789999999999999999988777776665667888887665543 222222 1
Q ss_pred CCCCCeEEeCCCC--------HHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 170 IDAENLLIAQPDS--------AENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 170 ~~~~~l~i~~~~~--------~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
++-.-+.....+. ..--....+.+..++.--++++|+++.+.
T Consensus 219 m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 219 MEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp GGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1111122222221 11233444555556667799999998775
No 167
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.48 E-value=0.00074 Score=60.24 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=37.0
Q ss_pred CCcEEEEEec-CCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 119 KGRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i~G~-~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
+..++.|+++ +|+||||++.++|..+++.|.+|+++|.+...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4567888876 89999999999999999999999999998654
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00053 Score=66.81 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP 162 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~ 162 (315)
++...++|+||||+|||++|..++... +..+++++.......
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSK 116 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchH
Confidence 455789999999999999999988776 678888877655443
No 169
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.43 E-value=0.00015 Score=61.29 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=34.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
++|.++.|.|++|+||||++..++......|..+.|++.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 6899999999999999999999988876556666788854
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.0012 Score=60.34 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=32.8
Q ss_pred cHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh---cCCeEEEEec
Q 021239 105 SLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK---LGGYCAYLDV 156 (315)
Q Consensus 105 ~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~---~g~~v~~i~~ 156 (315)
+..|-..+. .|-.+. ++|+||||+|||+++..++..... ....+..++.
T Consensus 46 ~~~l~~~l~-~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 46 VTVLKKTLK-SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HHHHHHHTT-CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHHHh-cCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 345555665 332222 899999999999999999887642 2334555554
No 171
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.43 E-value=0.00079 Score=62.78 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCCcEEEEEe-cCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYG-REASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G-~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.++.++.+++ ..|+||||++.++|..++..|.+|+++|++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3466777765 799999999999999999999999999998
No 172
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.43 E-value=0.00026 Score=73.61 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=24.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+|+++.|.||+|+||||++.+++...
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999985543
No 173
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.42 E-value=0.00013 Score=60.96 Aligned_cols=40 Identities=38% Similarity=0.371 Sum_probs=35.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.+|.++.|.|++|+||||++..++......|.++.+++.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 5789999999999999999999999888788888888753
No 174
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.41 E-value=0.00024 Score=64.56 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC------Ch-H----HHHHcCC------------CCCCeE
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL------DP-S----LAEAMGI------------DAENLL 176 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~------~~-~----~~~~~g~------------~~~~l~ 176 (315)
|.+++|+|++|+|||+|+.+++... + ++|+++.... +. . ..+.++- ......
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 4799999999999999999987654 2 8899875431 11 1 1222211 000000
Q ss_pred E-eCCCCHHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 177 I-AQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 177 i-~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
. .......+++..+.......++-+||||.++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 0 0124566677777665544347899999999876
No 175
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.41 E-value=0.00016 Score=65.74 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=36.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
+++|+++.|.||+|+||||++..++......++++.+...+-
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 468999999999999999999999998888888888776553
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.41 E-value=0.00049 Score=58.52 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
..++|+||+|+|||+++..++.....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999999999877653
No 177
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.40 E-value=0.00078 Score=62.03 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=41.2
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 107 ~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
.|+.++. .. .-.++.+.|..|+||||++.++|..++..|.+|+.+|++..
T Consensus 6 ~l~~~l~-~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 6 TLQSILD-QR--SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp SSHHHHH-CT--TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred cHHHHhc-CC--CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3455665 21 24688999999999999999999999999999999999843
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.40 E-value=0.00017 Score=59.69 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++|.++.|.|++||||||++..++......|.++++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 679999999999999999999998876556667777763
No 179
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=0.00017 Score=61.52 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=34.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
.++|.++.|.||+|+|||||+..++......|..+.++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 468999999999999999999988887765454567777654
No 180
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.40 E-value=3.6e-05 Score=70.91 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=46.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~ 197 (315)
++|+++.|.||+|+|||||+..++.......+.+ .++....... ....+.+.+... ........+...+ ..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i-~i~~~~e~~~------~~~~~~i~~~~g-gg~~~r~~la~aL-~~ 239 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII-SIEDTEEIVF------KHHKNYTQLFFG-GNITSADCLKSCL-RM 239 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE-EEESSCCCCC------SSCSSEEEEECB-TTBCHHHHHHHHT-TS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE-EECCeecccc------ccchhEEEEEeC-CChhHHHHHHHHh-hh
Confidence 4789999999999999999988776654444444 4442211110 000112222211 1122223333333 25
Q ss_pred CccEEeehhHhh
Q 021239 198 SIDVIVVDSVAA 209 (315)
Q Consensus 198 ~~~lVVIDsl~~ 209 (315)
+|+++++|....
T Consensus 240 ~p~ilildE~~~ 251 (330)
T 2pt7_A 240 RPDRIILGELRS 251 (330)
T ss_dssp CCSEEEECCCCS
T ss_pred CCCEEEEcCCCh
Confidence 799999997653
No 181
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.40 E-value=0.00013 Score=67.33 Aligned_cols=93 Identities=23% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh------HHHHHcCCCCC--CeEEeCCC---C--
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAE--NLLIAQPD---S-- 182 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~------~~~~~~g~~~~--~l~i~~~~---~-- 182 (315)
-+.+|.++.|.|+||+|||||+..++......++++.+++.+..... ....++++-.+ ++++.... .
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccccc
Confidence 35689999999999999999999999888777888888875432110 11233444333 33332221 1
Q ss_pred --HHHHHHHHHHHHHcCCccEEeehhHhh
Q 021239 183 --AENLLSVVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 183 --~e~~~~~i~~l~~~~~~~lVVIDsl~~ 209 (315)
.....+.+ ..+...+.++++||....
T Consensus 131 G~tr~~~e~~-~~~~~~~~~~iliDT~Gi 158 (337)
T 2qm8_A 131 GVAAKTRETM-LLCEAAGFDVILVETVGV 158 (337)
T ss_dssp HHHHHHHHHH-HHHHHTTCCEEEEEECSS
T ss_pred chHHHHHHHH-HHHhcCCCCEEEEECCCC
Confidence 12223322 123446789999997764
No 182
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.38 E-value=0.00038 Score=65.14 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=69.5
Q ss_pred CccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc--CCeEEEEecCCCCCh--HHHHHcCCCCCC
Q 021239 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDP--SLAEAMGIDAEN 174 (315)
Q Consensus 99 ~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~--g~~v~~i~~E~~~~~--~~~~~~g~~~~~ 174 (315)
+.+.||+..+|.++. +-+|.-..|.|++|+|||+++.+++.+.... +-.|+|....+.... ...+.+ . ..
T Consensus 157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~--~-G~ 230 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST--N-AI 230 (427)
T ss_dssp STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC--C-SE
T ss_pred cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHh--C-Ce
Confidence 678999999999987 6689999999999999999998888877653 335677665543332 111111 0 12
Q ss_pred eEEeCCC-CHH-H------HHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 175 LLIAQPD-SAE-N------LLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 175 l~i~~~~-~~e-~------~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
+.....+ ++. . .....+.+.+.+.--+|++||++.+.
T Consensus 231 VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 231 VIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 2222222 111 1 22334455555566688899999776
No 183
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.37 E-value=0.00012 Score=67.69 Aligned_cols=47 Identities=32% Similarity=0.355 Sum_probs=39.3
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHH----HHHHHHHh
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLAL----HVIKEAQK 146 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal----~la~~~~~ 146 (315)
....+|||+++||.+||.||++.|++++|.|+ |||+++. +++++-+.
T Consensus 17 ~~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~~Ll~~f~aeG~~ 67 (361)
T 4a8j_A 17 SQPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHSILGKLFAAQGIV 67 (361)
T ss_dssp CCEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHHHHHHHHHHHHHH
T ss_pred CCeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHHHHHHHHHHHhHh
Confidence 35789999999999997679999999999998 8999984 66655443
No 184
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.37 E-value=0.00062 Score=63.17 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCC
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENA 159 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~ 159 (315)
+.|+.++. . +.-.+++..|..|+||||++.++|..++ ..|.+|+.+|++..
T Consensus 7 ~~l~~l~~-~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLIT-S--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHT-C--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred ccHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34566665 2 2346888889999999999999999999 89999999999985
No 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.35 E-value=0.00056 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.|.||||+|||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999998888776
No 186
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.35 E-value=0.00013 Score=75.76 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|+++.|.||+|+||||++.+++...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 5679999999999999999999887543
No 187
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.35 E-value=0.00023 Score=61.75 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=34.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
+.|.|..|+||||++.++|...++.|.+|+.+|++...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 40 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDS 40 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTS
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 44589999999999999999999999999999998853
No 188
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.33 E-value=0.00025 Score=60.11 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
.++|.++.|.|++|+||||++..++......++.+.+++.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 467899999999999999999999887766788888886554
No 189
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.31 E-value=0.00036 Score=62.13 Aligned_cols=35 Identities=37% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
-+++| ++|+||||+||||++..++.... ...++++
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~ 105 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITAS 105 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEec
Confidence 34556 89999999999999998876552 3455554
No 190
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.31 E-value=0.00043 Score=64.13 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCCCChHHHHHcCC
Q 021239 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALDPSLAEAMGI 170 (315)
Q Consensus 107 ~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~~~~~~~~~~g~ 170 (315)
.|+.++. . +.-.++.+.|..|+||||++.++|..++ ..|.+|+.+|++. .......+|.
T Consensus 8 ~L~~~l~-~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~--~~~l~~~~~~ 68 (348)
T 3io3_A 8 TLESIVQ-H--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP--AHNLSDAFCQ 68 (348)
T ss_dssp SSHHHHT-C--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS--SCHHHHHHTS
T ss_pred hHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC--CCChHHHhcc
Confidence 4566665 2 2337999999999999999999999999 8899999999983 3334444443
No 191
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.31 E-value=9.6e-05 Score=59.30 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
+.-++|+|+||+|||++|..++..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 445899999999999999876543
No 192
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.31 E-value=0.001 Score=59.81 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=36.6
Q ss_pred CCcEEEEEec-CCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 119 KGRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 119 ~G~i~~i~G~-~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
++.++.|+++ +|+||||++.++|..++..|.+|++||++....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKG 134 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCC
Confidence 4556666665 899999999999999999999999999988643
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00049 Score=63.13 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=42.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCe--EEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHc----
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGY--CAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS---- 196 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~--v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~---- 196 (315)
++|+||||+||||++..++......+.. +..++... ....+++.+.+......
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~---------------------~~~~~~ir~~i~~~~~~~~~~ 107 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD---------------------DRGIDVVRNQIKDFASTRQIF 107 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS---------------------CCSHHHHHTHHHHHHHBCCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc---------------------cccHHHHHHHHHHHHhhcccC
Confidence 8999999999999999998887543222 22222110 11234444444444321
Q ss_pred -CCccEEeehhHhhhc
Q 021239 197 -GSIDVIVVDSVAALI 211 (315)
Q Consensus 197 -~~~~lVVIDsl~~l~ 211 (315)
.+.++++||.+..+.
T Consensus 108 ~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 108 SKGFKLIILDEADAMT 123 (340)
T ss_dssp SCSCEEEEETTGGGSC
T ss_pred CCCceEEEEeCCCCCC
Confidence 247999999988664
No 194
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.29 E-value=0.00037 Score=63.36 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=59.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH--hcCCeEEEEecCCCCC-hHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDTL 193 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~--~~g~~v~~i~~E~~~~-~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l 193 (315)
..+|.++.|.|++|+|||||+..++.... ..++.+.+++.+.... ....+..|+. ++.......+..++...+..+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 36889999999999999999988887665 4567788887765432 2223445544 322222333555555555443
Q ss_pred HH------------------------cCCccEEeehhHhhhc
Q 021239 194 TK------------------------SGSIDVIVVDSVAALI 211 (315)
Q Consensus 194 ~~------------------------~~~~~lVVIDsl~~l~ 211 (315)
.. ..++++||+|.+..+.
T Consensus 156 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~ 197 (308)
T 1sq5_A 156 KSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQ 197 (308)
T ss_dssp TTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTC
T ss_pred hCCCCceecccccccccCcccccceecCCCCEEEECchhhCC
Confidence 21 1235789999876655
No 195
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00027 Score=65.78 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=36.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
+++|+++.|.|++|+||||++..++......+++|.+...+-
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 458999999999999999999999998887888888877553
No 196
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.28 E-value=0.00029 Score=75.94 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
+++|+.+.|.||+|+|||||+..++.......+.
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~ 446 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 6799999999999999999998776555433333
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.27 E-value=0.0016 Score=59.01 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=50.2
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHH
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAEN 185 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~ 185 (315)
..|-..+. .| ....+++++||||+|||+++..++... +..+++++.... ..+.
T Consensus 36 ~~l~~~l~-~~-~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~----------------------~~~~ 88 (324)
T 3u61_B 36 ETFKSITS-KG-KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDC----------------------KIDF 88 (324)
T ss_dssp HHHHHHHH-TT-CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTC----------------------CHHH
T ss_pred HHHHHHHH-cC-CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccccc----------------------CHHH
Confidence 34444554 23 223578999999999999999987665 556777774321 1233
Q ss_pred HHHHHHHHHHc----CCccEEeehhHhhhc
Q 021239 186 LLSVVDTLTKS----GSIDVIVVDSVAALI 211 (315)
Q Consensus 186 ~~~~i~~l~~~----~~~~lVVIDsl~~l~ 211 (315)
+...+...... .+.++|+||.+..+.
T Consensus 89 i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 89 VRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp HHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred HHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 33334443332 267899999987764
No 198
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.26 E-value=0.00012 Score=79.17 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+++|+.+.|+|++|+||||++..+..-+-...|.+ ++|.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~iDG 1140 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI-FIDG 1140 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE-EETT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE-EECC
Confidence 68999999999999999999987765554444443 4443
No 199
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.26 E-value=0.00031 Score=75.86 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=27.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
+++|+.+.|.||+|+||||++..+...+-...+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~ 474 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCc
Confidence 6899999999999999999998776665444433
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.25 E-value=0.001 Score=61.31 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=38.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
..+|.++.|.|+||+||||++..++......++++.+++.+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 35788999999999999999999999888889999998877643
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.25 E-value=4.6e-05 Score=78.32 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=48.5
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~ 194 (315)
-|+.++..++|+||||+|||+++..++... +.+.+.++..+-... + ....+..+..+-+..
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~-------------~---~g~~~~~i~~~f~~a 566 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-------------W---FGESEANVREIFDKA 566 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC-------------C---TTTSSHHHHHHHHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh-------------h---cCccHHHHHHHHHHH
Confidence 467889999999999999999999998876 233333332211100 0 011112222222223
Q ss_pred HcCCccEEeehhHhhhcc
Q 021239 195 KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 ~~~~~~lVVIDsl~~l~~ 212 (315)
+...+.+++||.+..+..
T Consensus 567 ~~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 567 RQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp HHHCSBCCCCSSHHHHCC
T ss_pred HhcCCeEEEEEChhhhhh
Confidence 334688999999999874
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.25 E-value=0.00069 Score=62.78 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh---------HHHHHcCCCCCCeEEeCCCC---HH--
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---------SLAEAMGIDAENLLIAQPDS---AE-- 184 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~---------~~~~~~g~~~~~l~i~~~~~---~e-- 184 (315)
....+.|+|+||+||||++..++......|.+|+.++.+..... .+...++.+ .++.+....+ ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVH-PNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTC-TTEEEECCC--CCHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccC-CCeeEEECCCCccccch
Confidence 44589999999999999999999999888999999998755432 111222211 2344433221 11
Q ss_pred --HHHHHHHHHHHcCCccEEeehhHh
Q 021239 185 --NLLSVVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 185 --~~~~~i~~l~~~~~~~lVVIDsl~ 208 (315)
...+.+ ..+...+.++++||...
T Consensus 157 ~~~t~d~i-~~~~~~~~~~iiiDTpG 181 (355)
T 3p32_A 157 TRATRETV-VLLEAAGFDVILIETVG 181 (355)
T ss_dssp HHHHHHHH-HHHHHTTCCEEEEEECS
T ss_pred hHHHHHHH-HHHhhCCCCEEEEeCCC
Confidence 222333 33445678999999764
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.24 E-value=0.00033 Score=62.26 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~ 155 (315)
+++|+++.|.||+|+||||++..++...... .+.+.+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 6799999999999999999999988877665 67776655
No 204
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.23 E-value=0.0017 Score=59.48 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=36.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
-.++++.|..|+||||++.++|..+++.|.+|+++|++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4578889999999999999999999999999999999876
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.0019 Score=57.97 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcC--CeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCH
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g--~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~ 183 (315)
..|...+. .|-.+. ++|+||+|+|||+++..++......+ ..+++++.... ...
T Consensus 31 ~~l~~~l~-~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~~ 86 (323)
T 1sxj_B 31 DRLQQIAK-DGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD---------------------RGI 86 (323)
T ss_dssp HHHHHHHH-SCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC---------------------CSH
T ss_pred HHHHHHHH-cCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc---------------------cCh
Confidence 34555555 332222 89999999999999999988864322 23444443221 123
Q ss_pred HHHHHHHHHHHH------cCCccEEeehhHhhhc
Q 021239 184 ENLLSVVDTLTK------SGSIDVIVVDSVAALI 211 (315)
Q Consensus 184 e~~~~~i~~l~~------~~~~~lVVIDsl~~l~ 211 (315)
+.+.+.+..+.. ..+..+|+||.+..+.
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred HHHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 444444444331 2247899999988765
No 206
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00021 Score=59.46 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
|..+|.++.|.||+|+|||||+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999887754
No 207
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.21 E-value=0.00023 Score=65.94 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=38.3
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
...+.||+..||.++. +.+|+.+.|.|++|+|||||+..++....
T Consensus 52 ~~~~~tg~~ald~ll~---i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 52 DQPFILGVRAIDGLLT---CGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CSEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceecCCCCEEEEeeee---ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4456789999999965 88999999999999999999877776653
No 208
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.21 E-value=0.00093 Score=66.10 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI 170 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~ 170 (315)
...++.+.|.+|+||||++.++|..+++.|.+|+++|++.. ......+|.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~--~~l~~~l~~ 56 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA--SNVGQVFSQ 56 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT--CCHHHHTTS
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC--cCHHHHhCC
Confidence 45789999999999999999999999999999999999974 233444444
No 209
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.21 E-value=0.0006 Score=65.31 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=42.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCcc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~ 200 (315)
..++|+||||+|||+++..++... +.....++...... ....+.+.............
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~-------------------~~ir~~~~~a~~~~~~~~~~ 108 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGV-------------------KEIREAIERARQNRNAGRRT 108 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCH-------------------HHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCH-------------------HHHHHHHHHHHHhhhcCCCc
Confidence 469999999999999999887765 33444444211110 01122333333333345678
Q ss_pred EEeehhHhhhc
Q 021239 201 VIVVDSVAALI 211 (315)
Q Consensus 201 lVVIDsl~~l~ 211 (315)
+++||.+..+.
T Consensus 109 iLfIDEI~~l~ 119 (447)
T 3pvs_A 109 ILFVDEVHRFN 119 (447)
T ss_dssp EEEEETTTCC-
T ss_pred EEEEeChhhhC
Confidence 99999998764
No 210
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.21 E-value=0.00042 Score=67.29 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=45.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~ 195 (315)
-+++| ++|+||||+|||+|+..++..+ +.+.++++...-... . .......+..+.+
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~------------------~-~g~~~~~v~~lfq 117 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM------------------F-VGVGAARVRDLFE 117 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS------------------C-TTHHHHHHHHHTT
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh------------------h-hhhHHHHHHHHHH
Confidence 34556 9999999999999999888765 356677765321110 0 0111122333322
Q ss_pred ---cCCccEEeehhHhhhcc
Q 021239 196 ---SGSIDVIVVDSVAALIP 212 (315)
Q Consensus 196 ---~~~~~lVVIDsl~~l~~ 212 (315)
...+.+++||.+..+..
T Consensus 118 ~a~~~~p~il~IDEId~l~~ 137 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGR 137 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCC
T ss_pred HHHhcCCCEEEEehHHHHHH
Confidence 23568999999988763
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.21 E-value=0.00016 Score=61.95 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 97 ~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
..+.++. +..|...+. |+|+...++|+||||+|||++|..++...
T Consensus 38 ~~~~~~f-~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 38 QIEFITF-LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCCHHHH-HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CcCHHHH-HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555 778888887 78888889999999999999999988776
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.0002 Score=58.74 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-+++|+++.|.||+|+|||||+..++... ...+.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 35799999999999999999999988877 444443
No 213
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0011 Score=60.60 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=57.7
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc-------CCeEEEEecCCCCCh-----HHHHHc-CCCCC
Q 021239 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-------GGYCAYLDVENALDP-----SLAEAM-GIDAE 173 (315)
Q Consensus 107 ~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~-------g~~v~~i~~E~~~~~-----~~~~~~-g~~~~ 173 (315)
.|...+. +| ++..+.|+||||+|||+++..++...... .-.++|+++-.-... .+++.+ |..
T Consensus 35 ~L~~~i~-~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-- 109 (318)
T 3te6_A 35 PIYDSLM-SS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-- 109 (318)
T ss_dssp HHHHHHH-TT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--
T ss_pred HHHHHhc-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC--
Confidence 4445555 44 56678999999999999999999887642 225677886554332 234444 321
Q ss_pred CeEEeCCCCHHHHHHHHHHHH-HcCCccEEeehhHhhhc
Q 021239 174 NLLIAQPDSAENLLSVVDTLT-KSGSIDVIVVDSVAALI 211 (315)
Q Consensus 174 ~l~i~~~~~~e~~~~~i~~l~-~~~~~~lVVIDsl~~l~ 211 (315)
.......+.+...+.... ....+-+|++|.+..+.
T Consensus 110 ---~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 110 ---LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp -----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred ---CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 111223333333333321 23467899999888775
No 214
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.15 E-value=0.0013 Score=57.62 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=33.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
+.+..+..|+||||++.++|..++..|.+|+++|.+..
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34446778999999999999999999999999999864
No 215
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.15 E-value=0.0022 Score=62.27 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=31.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc--CC--eEEEEecCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL--GG--YCAYLDVEN 158 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~--g~--~v~~i~~E~ 158 (315)
+..+.-++|+|.+|+|||+++..++..++.. .+ +++.+|..+
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4457789999999999999999998876643 12 455566544
No 216
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.13 E-value=0.00034 Score=59.14 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
++|.++.|.|++|+||||++..++... | ..+++.+.-..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~~ 65 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFHS 65 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccccc
Confidence 579999999999999999999888766 2 45677655443
No 217
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.13 E-value=0.001 Score=63.48 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=49.6
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCC----eEEEEecCCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG----YCAYLDVENALD 161 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~----~v~~i~~E~~~~ 161 (315)
...+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+.+++..+...+. .|+|....+...
T Consensus 130 ~~~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~ 196 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFE 196 (465)
T ss_dssp CCCCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHH
T ss_pred CcccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcH
Confidence 456789999999999987 668888999999999999999888776654334 677776655443
No 218
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.11 E-value=0.0029 Score=55.17 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=33.3
Q ss_pred cEEEE-EecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 121 RIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 121 ~i~~i-~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
.++.| .+..|+||||++.++|..++..|.+|+++|++..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34555 5568999999999999999999999999999873
No 219
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.11 E-value=0.00061 Score=69.84 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
++|+++.|.||+|+||||++.+++....
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 5799999999999999999999887643
No 220
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.10 E-value=0.00091 Score=61.90 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
+.+..+.|.|+||+|||||...++......++++.++..+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4578999999999999999999998887788888888866543
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.10 E-value=0.0003 Score=59.27 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+|.++.|.||+|+||||++..++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998887653
No 222
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.10 E-value=0.0021 Score=59.97 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.2
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc-CCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g~~v~~i~ 155 (315)
+++|.++.|.||+|+||||++..++...... .+.++++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 5789999999999999999999998877665 57776665
No 223
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.09 E-value=0.00044 Score=66.06 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=41.9
Q ss_pred CCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 98 ~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
...+.||...||.++. +.+|+.+.|.|++|+|||||+..++..... ...++.+..+
T Consensus 138 ~~~~~tg~~vld~vl~---i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~ 193 (438)
T 2dpy_A 138 EHVLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGE 193 (438)
T ss_dssp CSBCCCSCHHHHHHSC---CBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESC
T ss_pred ceecCCCceEEeeeEE---ecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEece
Confidence 3455678999999965 899999999999999999998777666533 3334444443
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.08 E-value=0.00031 Score=59.78 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|+++.|.||+|+|||||+..++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999998887665
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.07 E-value=0.00042 Score=57.66 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
|++++.++.|.|+||+||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56788999999999999999999988765
No 226
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.05 E-value=0.00068 Score=71.24 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
|++++|.||+|+||||++.+++..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 899999999999999999998443
No 227
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.04 E-value=0.0015 Score=67.59 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=44.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh-------cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHH-HHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK-------LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAEN-LLSVVD 191 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~-------~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~-~~~~i~ 191 (315)
...++|+||||+|||+++..++..... .+.++++++...-.. |. ......++ +...+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~-------~~~g~~~~~l~~~~~ 256 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GA-------KYRGEFEERLKAVIQ 256 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cC-------ccchHHHHHHHHHHH
Confidence 345789999999999999999988754 356777776532111 00 00112232 233333
Q ss_pred HHHHcCCccEEeehhHhhhcc
Q 021239 192 TLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~~ 212 (315)
......++.+++||.+..+.+
T Consensus 257 ~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 257 EVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HHHTTCSSEEEEECCC-----
T ss_pred HHHhcCCCeEEEEecHHHHhc
Confidence 333334678999999998874
No 228
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.04 E-value=0.00017 Score=63.40 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
-+++|+++.|.||+|+|||||+..++.......+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 36799999999999999999998887655444445543
No 229
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.04 E-value=0.00053 Score=60.61 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++.++.|.|+|||||||++..++......|..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46799999999999999999998876666777766664
No 230
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=97.04 E-value=0.0012 Score=62.98 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcC-------C----eEEEEecCCCCC
Q 021239 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG-------G----YCAYLDVENALD 161 (315)
Q Consensus 95 ~~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g-------~----~v~~i~~E~~~~ 161 (315)
....+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+.+++..+...+ . .|+|....+...
T Consensus 125 ~~~~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~ 199 (464)
T 3gqb_B 125 RKPEQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQR 199 (464)
T ss_dssp CCCCCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHH
T ss_pred cCccccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchH
Confidence 3457889999999999987 67899999999999999999988876654321 2 677766554443
No 231
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.02 E-value=0.002 Score=55.66 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=35.0
Q ss_pred CCcEEEEEe-cCCCChhHHHHHHHHHHHhc-CCeEEEEecCCC
Q 021239 119 KGRIVEIYG-REASGKTTLALHVIKEAQKL-GGYCAYLDVENA 159 (315)
Q Consensus 119 ~G~i~~i~G-~~GsGKTtlal~la~~~~~~-g~~v~~i~~E~~ 159 (315)
.+.++.+++ ..|+||||++.++|..++.. |.+|+++|++..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 355666665 58999999999999999998 999999999866
No 232
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.02 E-value=0.00014 Score=63.69 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
-+++|+++.|.||+|+|||||+..++.....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999999887765543
No 233
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.01 E-value=0.0028 Score=61.93 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
...+.+.||+..+|.++. +-+|.-..|.|++|+|||+++.+++.+. ...-++|....+...
T Consensus 211 ~~~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~~--~~~v~V~~~iGER~~ 271 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKWS--DVDLVVYVGCGERGN 271 (600)
T ss_dssp CCCSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHHS--SCSEEEEEEEEECHH
T ss_pred CCCceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhcc--CCCEEEEEEecccHH
Confidence 456889999999999987 7799999999999999999999887653 345677777655543
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.0007 Score=57.65 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH-hcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~-~~g~~v~~i~~ 156 (315)
+++|.++.|.|++|+||||++..++.... ..|.++.+++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 56899999999999999999999988775 45667888874
No 235
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.00 E-value=0.00074 Score=61.58 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhc-C-CeEEEEecCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-G-GYCAYLDVENA 159 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~-g-~~v~~i~~E~~ 159 (315)
+++|.++.|.|++|||||||+..++...... | .++.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 6789999999999999999998888776543 3 36778876654
No 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.99 E-value=0.00044 Score=58.23 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|.++.|.|++||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998887654
No 237
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.99 E-value=0.001 Score=63.75 Aligned_cols=113 Identities=14% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc----CCeEEEEecCCCCCh--HHHHHc-
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVENALDP--SLAEAM- 168 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~----g~~v~~i~~E~~~~~--~~~~~~- 168 (315)
...+.+.||+..+|-++. +-+|.-..|.|++|+|||+|+.++|.++... +..|+|....+.... +..+.+
T Consensus 131 ~~~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~ 207 (469)
T 2c61_A 131 PPKDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFE 207 (469)
T ss_dssp CCCSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred ccccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHH
Confidence 456789999999999987 6788899999999999999999888877542 235777766554433 122111
Q ss_pred --C-CCCCCeEEeCCCC--HHH------HHHHHHHHH-HcCCccEEeehhHhhhc
Q 021239 169 --G-IDAENLLIAQPDS--AEN------LLSVVDTLT-KSGSIDVIVVDSVAALI 211 (315)
Q Consensus 169 --g-~~~~~l~i~~~~~--~e~------~~~~i~~l~-~~~~~~lVVIDsl~~l~ 211 (315)
| ++-.-+.+...+. ... .....+.+. +++.--++++||++.+.
T Consensus 208 ~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A 262 (469)
T 2c61_A 208 KTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYA 262 (469)
T ss_dssp HHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHH
T ss_pred hccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 2 1111122222222 222 123344455 35667799999998775
No 238
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=96.98 E-value=0.0017 Score=60.62 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=33.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
.++.+.|..|+||||++.++|..++..|.+|+++|+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 467889999999999999999999999999999998
No 239
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.98 E-value=0.00016 Score=62.90 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=25.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+++|+++.|.||+|+|||||+..++....
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 67999999999999999999988776554
No 240
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.98 E-value=0.00091 Score=60.79 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
+.|+.+.- .+++|+++.|.||+|+|||||+..++... .+.++.
T Consensus 114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 114 NALKLWLK--GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHHHHH--TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred hhhccceE--EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 34555554 78999999999999999999999988877 456643
No 241
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00051 Score=56.43 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.+|.++.|.|+||+||||++..++... | ..+++.+.-.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 468899999999999999999887654 3 4567766543
No 242
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.97 E-value=0.00099 Score=67.91 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
|+++.|.||+|+||||++.+++....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 89999999999999999999987653
No 243
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.97 E-value=0.00072 Score=57.29 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
++|.++.|.|++||||||++..++..... .+.|++.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence 57899999999999999999888776532 477777654
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.95 E-value=0.0005 Score=59.45 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+++|.++.|.||+|+|||||+..++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999998887665
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.94 E-value=0.0015 Score=66.63 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=47.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccE
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDV 201 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~l 201 (315)
.++|+||||+|||++|..++......+.+++++++..-.... .. ....+.. .+......+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~------------~~----~~~~l~~----~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH------------ST----SGGQLTE----KVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC------------CC----C---CHH----HHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc------------cc----ccchhhH----HHHhCCCeE
Confidence 699999999999999999998887777888888864322210 00 0112222 233456789
Q ss_pred EeehhHhhhc
Q 021239 202 IVVDSVAALI 211 (315)
Q Consensus 202 VVIDsl~~l~ 211 (315)
|++|.+..+.
T Consensus 583 l~lDEi~~~~ 592 (758)
T 3pxi_A 583 VLLDAIEKAH 592 (758)
T ss_dssp EEEECGGGSC
T ss_pred EEEeCccccC
Confidence 9999997664
No 246
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.94 E-value=0.017 Score=44.92 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=85.9
Q ss_pred CcEEEEE-ecCCCChhHHHHHHHHHHHh--cCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHc
Q 021239 120 GRIVEIY-GREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (315)
Q Consensus 120 G~i~~i~-G~~GsGKTtlal~la~~~~~--~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~ 196 (315)
+.++++. -.+|.|-..+..-+...... .++.++||.....+........|++++++.+.++.+..+.++.+++.++.
T Consensus 2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs 81 (119)
T 1ofu_X 2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL 81 (119)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence 4466664 55788887887777777765 77899999988878888888999999999999999999999999999999
Q ss_pred CCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 021239 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (315)
Q Consensus 197 ~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~i 253 (315)
+.+..||.. +..+- ...+++|...+++-++..+++
T Consensus 82 g~~~aVl~w-l~~l~---------------------~~~~RRLqlAA~~g~~~~~l~ 116 (119)
T 1ofu_X 82 GRSHTVVSW-LEPLS---------------------RAARKQLSRAAQLGQAQSLNI 116 (119)
T ss_dssp TCEEEEEEC-CSSCC---------------------HHHHHHHHHHHHHHTCEEEEE
T ss_pred CCccEEEEC-CCcCC---------------------hHHHHHHHHHHHhCCCeEEEe
Confidence 999988874 11111 123566666667777776664
No 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.94 E-value=0.00022 Score=61.19 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
++++|+++.|.||+|+|||||+..++.. ....+.+
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4578999999999999999999998887 5544444
No 248
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.93 E-value=0.0034 Score=57.11 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=42.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCcc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~ 200 (315)
..++|+||||+|||+++..++... +.+.+.++.... ....++...+.. .....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~---------------------~~~~~~~~~~~~---~~~~~ 108 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMI---------------------EKSGDLAAILTN---LSEGD 108 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGC---------------------CSHHHHHHHHHT---CCTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhc---------------------cchhHHHHHHHh---ccCCC
Confidence 458999999999999999986553 455555553221 122233322222 34678
Q ss_pred EEeehhHhhhc
Q 021239 201 VIVVDSVAALI 211 (315)
Q Consensus 201 lVVIDsl~~l~ 211 (315)
+++||.+..+.
T Consensus 109 vl~lDEi~~l~ 119 (338)
T 3pfi_A 109 ILFIDEIHRLS 119 (338)
T ss_dssp EEEEETGGGCC
T ss_pred EEEEechhhcC
Confidence 99999999775
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.93 E-value=0.00042 Score=59.62 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|+++.|.||+|+|||||+..++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999999888765
No 250
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.91 E-value=0.00099 Score=55.17 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=30.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++.|.|+||+||||++..++......|..+.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 68999999999999999999887666777888853
No 251
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0018 Score=58.17 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHH
Q 021239 123 VEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~ 145 (315)
++|+||||+|||+++..++....
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999988764
No 252
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.90 E-value=0.0027 Score=62.34 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=60.3
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHH---Hh-cCCeEEEEecCCCCChHH-------HHHcCCCCCC
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA---QK-LGGYCAYLDVENALDPSL-------AEAMGIDAEN 174 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~---~~-~g~~v~~i~~E~~~~~~~-------~~~~g~~~~~ 174 (315)
..|...+. .+-....++.|+|++|+|||||+.+++... .. -...+.|++......... +..++....
T Consensus 134 ~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~- 211 (591)
T 1z6t_A 134 NAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDES- 211 (591)
T ss_dssp HHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCC-
T ss_pred HHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccc-
Confidence 34555564 222346799999999999999999987543 22 224688988765432211 223331100
Q ss_pred eEEeCCCCHHHHHHHHHHHHHcC-CccEEeehhHh
Q 021239 175 LLIAQPDSAENLLSVVDTLTKSG-SIDVIVVDSVA 208 (315)
Q Consensus 175 l~i~~~~~~e~~~~~i~~l~~~~-~~~lVVIDsl~ 208 (315)
..-..+.+.+.+...+...+... ++-+||+|.+.
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 212 FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 00112345667777777665543 57899999763
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.89 E-value=0.00089 Score=55.43 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
|.++.|.|+|||||||++..++......|.+..+++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 5789999999999999999998877655543556664
No 254
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.88 E-value=0.0027 Score=58.31 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
..++|+||+|+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987764
No 255
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.86 E-value=0.0058 Score=61.38 Aligned_cols=24 Identities=42% Similarity=0.646 Sum_probs=21.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHV 140 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~l 140 (315)
+++|+++.|.||+|+|||||+..+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHH
Confidence 568999999999999999998644
No 256
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.85 E-value=0.003 Score=61.60 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=72.8
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh--HHHHHcCC---
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGI--- 170 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~--~~~~~~g~--- 170 (315)
...+.+.||+..+|.++. +-+|.-..|.|++|+|||+++.+++... ....|+|....+.... +..+.+.-
T Consensus 206 ~~~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~iGER~~Ev~e~~~~~~el~d 280 (588)
T 3mfy_A 206 PPEVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGCGERGNEMTDVLEEFPKLKD 280 (588)
T ss_dssp CSCSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEECCSSSSHHHHHHHHTTTCEE
T ss_pred cCCcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEecccHHHHHHHHHHHHHhcc
Confidence 456789999999999987 7789999999999999999998876542 3457888887776665 33444311
Q ss_pred -----C-CCC-eEEeC-CC-C-HHHH------HHHHHHHHHcCCccEEeehhHhhhc
Q 021239 171 -----D-AEN-LLIAQ-PD-S-AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 171 -----~-~~~-l~i~~-~~-~-~e~~------~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
. .++ +.+.. .+ + .... ....+.+...+.--++++||++.+.
T Consensus 281 ~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A 337 (588)
T 3mfy_A 281 PKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337 (588)
T ss_dssp TTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCC
T ss_pred cccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHH
Confidence 0 112 22222 22 1 1111 2233444445555678899999776
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.85 E-value=0.00073 Score=57.00 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++|.++.|.|+|||||||++..++...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999998766
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00058 Score=57.79 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++|.++.|.||+|+|||||+..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999888765
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.84 E-value=0.00068 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++|.++.|.||+|+||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999887654
No 260
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.83 E-value=0.00062 Score=65.26 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=50.1
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHH-
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT- 194 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~- 194 (315)
|..++.-++|+||||+|||++|..++..... ..+.++++...-... .....+.+...+...+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~f~~a~~ 121 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEVYST----------------EIKKTEVLMENFRRAIG 121 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGGCCS----------------SSCHHHHHHHHHHHTEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHHHHH----------------hhhhhHHHHHHHHHHHh
Confidence 5566677999999999999999998887632 245555553221110 1112233333333321
Q ss_pred -HcCCccEEeehhHhhhcc
Q 021239 195 -KSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 195 -~~~~~~lVVIDsl~~l~~ 212 (315)
+...+.+|+||.+..+.+
T Consensus 122 ~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 122 LRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp EEEEEEEEEEEEEEEEEEE
T ss_pred hhhcCCcEEEEechhhccc
Confidence 334689999999998884
No 261
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.82 E-value=0.0027 Score=61.80 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCCCccccCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 96 ~~~~~i~TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
...+.+.||+..+|.++. +-+|.-..|.|++|+|||+++.+++.+. ...-|+|....+..
T Consensus 200 ~~~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~--~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWS--NADVVVYVGSGERG 259 (578)
T ss_dssp CSCSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHS--SCSEEEEEEEEECH
T ss_pred cCCCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhcc--CCCEEEEEEecccH
Confidence 456889999999999986 7789999999999999999999887653 34567777665543
No 262
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.79 E-value=0.0025 Score=57.85 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
.++.|+|++|+|||+|+.+++.... ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 5999999999999999999987753 3578998764
No 263
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.78 E-value=0.003 Score=61.89 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=58.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHH----HHHhcCCeEEEEecCCCC--Ch-----HHHHHcCCCCC--CeEEeCCCCHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIK----EAQKLGGYCAYLDVENAL--DP-----SLAEAMGIDAE--NLLIAQPDSAE 184 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~----~~~~~g~~v~~i~~E~~~--~~-----~~~~~~g~~~~--~l~i~~~~~~e 184 (315)
+...++.|+|.+|+||||||.+++. .....-..++|++..... .. ..++.++...+ .+.-.+..+.+
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 229 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSV 229 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHH
Confidence 3457999999999999999998875 233334678899876653 22 24555654422 22111223456
Q ss_pred HHHHHHHHHHHcCCccEEeehhHhh
Q 021239 185 NLLSVVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 185 ~~~~~i~~l~~~~~~~lVVIDsl~~ 209 (315)
++...+.+.+...+.-+||+|.+..
T Consensus 230 ~l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 230 VLKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCC
Confidence 6677777766543367999997653
No 264
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0014 Score=55.08 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
+|.++.|.|+|||||||++..++......| .+++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 467899999999999999999988776555 554443
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.75 E-value=0.0037 Score=64.57 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=49.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHH-cCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA-MGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~-~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~ 199 (315)
..++|+||||+|||++|..++......+.+.+++++..-........ +|..+.-+ .......+.. .+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~---G~~~~g~l~~----~~~~~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYV---GYEEGGQLTE----AVRRRPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHH----HHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCc---CccccchHHH----HHHhCCC
Confidence 47899999999999999999988877677888888755443321111 12111100 0000112222 2333457
Q ss_pred cEEeehhHhhhc
Q 021239 200 DVIVVDSVAALI 211 (315)
Q Consensus 200 ~lVVIDsl~~l~ 211 (315)
.+|+||.+..+.
T Consensus 662 ~vl~lDEi~~l~ 673 (854)
T 1qvr_A 662 SVILFDEIEKAH 673 (854)
T ss_dssp EEEEESSGGGSC
T ss_pred eEEEEecccccC
Confidence 899999997654
No 266
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.75 E-value=0.0016 Score=56.92 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=36.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
.+..++.+.|.+|+||||++.+++...+ .|.+++.++.+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 3457899999999999999999999998 8999999998765
No 267
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.75 E-value=0.0019 Score=53.67 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=32.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
...-.++.|.|++|+|||||+..++......+.++..+..+
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 34456899999999999999999998877777777666654
No 268
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.74 E-value=0.00048 Score=74.21 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+++|+.+.|.||+|+|||||+..++.....
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 679999999999999999999887655433
No 269
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.74 E-value=0.00075 Score=60.10 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
+++|+++.|.||+|+|||||+..++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999999888765
No 270
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.73 E-value=0.003 Score=62.42 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHhhcCC-CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 106 LKLDLALGIG-GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 106 ~~LD~~l~~G-Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
+.||.+++ + +-....++++.|.+|+||||++.++|..+++.|.+|+++|++..
T Consensus 313 ~~l~~~~~-~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 313 PSLSALVD-DIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp CCHHHHHH-HHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred chhhhhhh-hhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 66777776 3 23445678889999999999999999999999999999999855
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.002 Score=53.39 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=49.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC---------CChHHHHHcCCC-----CCC-eEEeC---CCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---------LDPSLAEAMGID-----AEN-LLIAQ---PDS 182 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~---------~~~~~~~~~g~~-----~~~-l~i~~---~~~ 182 (315)
.++.|.|++|+||||++..++.....+|.+|..+..+.. .+..+.+..|.+ ..+ ..+.. ...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~aGa~~v~~~s~~~~~~~~~~~~~~ 84 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAVEGDGLLQLHLRRPLWR 84 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--------------------CSEEEEEETTEEEEEECCSCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhcCCCeEEeccCCEEEEEecccccc
Confidence 478999999999999999999988888888888885533 112334444532 122 22222 112
Q ss_pred HHHHHHHHHHHHHcCCccEEeehhHhh
Q 021239 183 AENLLSVVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 183 ~e~~~~~i~~l~~~~~~~lVVIDsl~~ 209 (315)
.+.+.+.+..+ ++++++|.....
T Consensus 85 ~~~~~~ll~~~----~~D~vlVEg~~~ 107 (169)
T 1xjc_A 85 LDDVLALYAPL----RLDLVLVEGYKQ 107 (169)
T ss_dssp HHHHHHHHGGG----CCSEEEEECCTT
T ss_pred hHHHHHHHHhc----CCCEEEEeCCCC
Confidence 33333333322 789999987764
No 272
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.70 E-value=0.0011 Score=57.97 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHh-----cCCeEEEEecCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVEN 158 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~-----~g~~v~~i~~E~ 158 (315)
-+++|.++.|.||+||||||++..++...-. ....+.|++.+.
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 4678999999999999999999888775421 123466777653
No 273
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.69 E-value=0.0027 Score=62.33 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=30.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcC----CeEEEEecCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLG----GYCAYLDVEN 158 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g----~~v~~i~~E~ 158 (315)
+.-.+|+|.+|+|||+++..++..++... -+++.+|..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 34589999999999999999998887532 3566677654
No 274
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.67 E-value=0.00056 Score=59.09 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=19.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHH-HHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVI-KEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la-~~~ 144 (315)
+++|.++.|.||+|+||||++..++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998887 554
No 275
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.66 E-value=0.00035 Score=63.07 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=25.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
+++|+++.|.||+|+|||||+..++....
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 67999999999999999999988776543
No 276
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.66 E-value=0.0026 Score=57.32 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~ 198 (315)
....++|+||||+|||+++..++... +.++.+++..... ...++...+.. ....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~---------------------~~~~l~~~l~~--~~~~ 90 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIE---------------------KPGDLAAILAN--SLEE 90 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCC---------------------SHHHHHHHHTT--TCCT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccC---------------------ChHHHHHHHHH--hccC
Confidence 34568999999999999999988765 4566666643221 12233332221 0245
Q ss_pred ccEEeehhHhhhc
Q 021239 199 IDVIVVDSVAALI 211 (315)
Q Consensus 199 ~~lVVIDsl~~l~ 211 (315)
..+++||.+..+.
T Consensus 91 ~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 91 GDILFIDEIHRLS 103 (324)
T ss_dssp TCEEEETTTTSCC
T ss_pred CCEEEEECCcccc
Confidence 6799999888664
No 277
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.66 E-value=0.0021 Score=56.47 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=34.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
++.|.|..|+||||++.++|..+++.|.+|+++|++...
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 566689999999999999999999999999999998654
No 278
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.66 E-value=0.00078 Score=59.73 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+++|+++.|.||+|+|||||+..++...
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 36799999999999999999998887654
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.0011 Score=56.21 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+|.+++|+|+||+||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999887655
No 280
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.65 E-value=0.0016 Score=59.98 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
.|..+|..++|+||||+|||+++..++..... ..+.+.+.
T Consensus 65 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~~~~~~ 104 (368)
T 3uk6_A 65 EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DTPFTAIA 104 (368)
T ss_dssp TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SCCEEEEE
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cCCccccc
Confidence 56677899999999999999999999888742 22444444
No 281
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.016 Score=52.43 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=44.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc---CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHH-
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKL---GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK- 195 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~---g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~- 195 (315)
...++++||||+|||+++..++..+..- ...+.+++.+. .....+++.+.+.....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHHHHHHHHHHHhhc
Confidence 4589999999999999999998754211 11223332211 01234555555544422
Q ss_pred --cCCccEEeehhHhhhc
Q 021239 196 --SGSIDVIVVDSVAALI 211 (315)
Q Consensus 196 --~~~~~lVVIDsl~~l~ 211 (315)
..+.++||||....+.
T Consensus 78 p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMT 95 (305)
T ss_dssp CSSSSSEEEEETTGGGBC
T ss_pred cccCCceEEEeccHHHhC
Confidence 2356899999988775
No 282
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.63 E-value=0.0077 Score=61.19 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhc-------CCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKL-------GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~-------g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~ 191 (315)
.+..++|+||||+|||+++..++...... +..+..++...-.. | .......++.+..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------~-------~~~~g~~e~~l~~~~ 271 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------G-------TKYRGDFEKRFKALL 271 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------C-------CCCSSCHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------c-------ccccchHHHHHHHHH
Confidence 56778999999999999999999877542 22332222111000 0 001123444444333
Q ss_pred HHHHcCCccEEeehhHhhhcc
Q 021239 192 TLTKSGSIDVIVVDSVAALIP 212 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~~ 212 (315)
..+...+..+++||.+..+.+
T Consensus 272 ~~~~~~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 272 KQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_dssp HHHSSSSCEEEEETTTTTTTT
T ss_pred HHHHhcCCeEEEEechHHHhh
Confidence 334444678999999998874
No 283
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.63 E-value=0.0024 Score=53.85 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=31.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
.+|.++.|.|++||||||++..++......+-.+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 35789999999999999999999988766666664443
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.61 E-value=0.0023 Score=55.45 Aligned_cols=37 Identities=24% Similarity=0.183 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~ 153 (315)
.+.+|.++.|.|++|+||||++..++..... +..++.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4568999999999999999999999887766 666643
No 285
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.61 E-value=0.0053 Score=63.70 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=22.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVI 141 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la 141 (315)
+++|+++.|+|++|+|||||+..++
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999998865
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.61 E-value=0.00056 Score=60.86 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
-++ |+++.|.||+|+|||||+..++... ...+.+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I 60 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE
Confidence 378 9999999999999999999888766 544444
No 287
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.60 E-value=0.0022 Score=58.50 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
+..-.++.|+|--|+||||.+.+++...++.|.+|+.+|++-.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4456799999999999999999999999999999999999853
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.60 E-value=0.0017 Score=61.64 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
.+|.+++|.||+|+||||++..++.......+.+.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 68899999999999999999998877765567777665
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.60 E-value=0.0012 Score=53.99 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=25.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
.|.++.|.|+|||||||++..++... + ..|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---C--CCEEec
Confidence 46789999999999999998887654 2 346664
No 290
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.59 E-value=0.0055 Score=62.26 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=48.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCc
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~ 199 (315)
..++|+||||+|||++|..++... +.+++.+++.+-... ...+-+|..+. ....+....+...++....
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~ 558 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPH 558 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCC
Confidence 368999999999999999988776 567888886443321 01111121110 0011111122333444567
Q ss_pred cEEeehhHhhhc
Q 021239 200 DVIVVDSVAALI 211 (315)
Q Consensus 200 ~lVVIDsl~~l~ 211 (315)
.+|+||.+..+.
T Consensus 559 ~vl~lDEi~~~~ 570 (758)
T 1r6b_X 559 AVLLLDEIEKAH 570 (758)
T ss_dssp EEEEEETGGGSC
T ss_pred cEEEEeCccccC
Confidence 899999998664
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0021 Score=57.76 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
..+.+++|+|+||+||||++..++... +....+++.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 357899999999999999999887654 2345677763
No 292
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.00091 Score=64.27 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCC-eEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-YCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~-~v~~i~~ 156 (315)
+++|+++.|.||+|+|||||+..++......++ .+++++.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 458999999999999999999988877665556 5355554
No 293
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.57 E-value=0.015 Score=53.15 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=47.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHH--cCCCCCCeEEeCC------CCHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEA--MGIDAENLLIAQP------DSAENLLSVV 190 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~--~g~~~~~l~i~~~------~~~e~~~~~i 190 (315)
...++|+||+|+|||+++..++.......... ..+-.. .-++. -|..+ ++....+ ...+++.+.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-----~~~c~~c~~c~~~~~~~~~-d~~~~~~~~~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQG-----HKSCGHCRGCQLMQAGTHP-DYYTLAPEKGKNTLGVDAVREVT 97 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-----TBCCSCSHHHHHHHHTCCT-TEEEECCCTTCSSBCHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-----CCCCCCCHHHHHHhcCCCC-CEEEEeccccCCCCCHHHHHHHH
Confidence 34799999999999999999998875332110 000000 11111 12222 2333322 2355555554
Q ss_pred HHHHH---cCCccEEeehhHhhhc
Q 021239 191 DTLTK---SGSIDVIVVDSVAALI 211 (315)
Q Consensus 191 ~~l~~---~~~~~lVVIDsl~~l~ 211 (315)
..+.. ..+.+++|||....+.
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBC
T ss_pred HHHhhccccCCcEEEEECchhhcC
Confidence 44321 2457999999988765
No 294
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.56 E-value=0.0027 Score=56.68 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=35.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.++.|+|..|+||||++.++|..+++.|.+|+++|++...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3566689999999999999999999999999999998654
No 295
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.56 E-value=0.01 Score=57.77 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
...+++++|.||+||||++..++...-..+..+..|+.+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3468999999999999999999987765666777777543
No 296
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.56 E-value=0.0011 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~ 142 (315)
|.++.|.|+||+||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999998864
No 297
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0014 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+|.++.|.|+|||||||++..++...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987654
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.55 E-value=0.0016 Score=53.50 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
|.++.|.|+||+||||++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999887654
No 299
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.55 E-value=0.0015 Score=65.37 Aligned_cols=48 Identities=27% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAE 166 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~ 166 (315)
...+.+|.||||+|||+.+..++....+++.+++..+.-+..-..+++
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~e 251 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVE 251 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHH
Confidence 456999999999999999999999999999999988865544333333
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.52 E-value=0.0015 Score=55.19 Aligned_cols=40 Identities=33% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
-+++|.++.|.|++|+||||++..++.... .+.|++.+.-
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 466899999999999999999988764321 4677776643
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.52 E-value=0.0011 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
|.++.|.||+|+||||++..++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999988887654
No 302
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.0036 Score=52.70 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
...+|.++.|.|++||||||++..++......+-.+..+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3457889999999999999999999887765565664443
No 303
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.47 E-value=0.0016 Score=57.21 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
+..++|+|+||+|||++|..++......+.+++++++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 45689999999999999999887766566788888876543
No 304
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.43 E-value=0.0041 Score=63.91 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh---------------------------cC-----CeEEEEecCCCCChHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK---------------------------LG-----GYCAYLDVENALDPSL 164 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~---------------------------~g-----~~v~~i~~E~~~~~~~ 164 (315)
+++|+++.|+|++|+|||||+..+...... .| .++++++-.......+
T Consensus 520 i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~r 599 (842)
T 2vf7_A 520 FPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPR 599 (842)
T ss_dssp EESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTT
T ss_pred EcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCcc
Q ss_pred --------------------------------------------------------------------------------
Q 021239 165 -------------------------------------------------------------------------------- 164 (315)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (315)
T Consensus 600 s~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v 679 (842)
T 2vf7_A 600 SNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEV 679 (842)
T ss_dssp CCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGC
T ss_pred ccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhh
Q ss_pred ----------------------------------HHHcCCCCC--CeEEeCCCCHHHHHHHHHHHHHcC--CccEEeehh
Q 021239 165 ----------------------------------AEAMGIDAE--NLLIAQPDSAENLLSVVDTLTKSG--SIDVIVVDS 206 (315)
Q Consensus 165 ----------------------------------~~~~g~~~~--~l~i~~~~~~e~~~~~i~~l~~~~--~~~lVVIDs 206 (315)
.+.+|+... +-....-.-.+...-.+...+... +++++++|.
T Consensus 680 ~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE 759 (842)
T 2vf7_A 680 EYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE 759 (842)
T ss_dssp CBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEEC
T ss_pred hhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEEC
Q ss_pred HhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Q 021239 207 VAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQ 255 (315)
Q Consensus 207 l~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq 255 (315)
.+.-... .....+.+.++++ .+.|.+||+++|
T Consensus 760 PTsGLD~-------------~~~~~l~~lL~~L----~~~G~tVIvisH 791 (842)
T 2vf7_A 760 PTTGLHP-------------ADVERLQRQLVKL----VDAGNTVIAVEH 791 (842)
T ss_dssp TTTTCCH-------------HHHHHHHHHHHHH----HHTTCEEEEECC
T ss_pred CCCCCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEcC
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.42 E-value=0.0025 Score=59.61 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++++|.++.|+||||+|||||+..++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 78999999999999999999999888643
No 306
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0039 Score=51.59 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
++.|.|++||||||++..++......|-.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6889999999999999999887765566665444
No 307
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.37 E-value=0.0022 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++.|.|+|||||||++..++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999887665
No 308
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.0017 Score=57.10 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
..+.++.|.|+|||||||++..++... +..+.+++.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 456799999999999999999887654 33456777654
No 309
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.36 E-value=0.0024 Score=57.51 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
++-++.|+|++||||||++..++......+..+.+++.+.-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 356899999999999999999887665556668889977654
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.36 E-value=0.0025 Score=52.93 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=28.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.++|..+.|+|+|||||||++..++.... ...+++.+
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d 43 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVG 43 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHH
Confidence 34688999999999999999988876521 24566654
No 311
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.35 E-value=0.0043 Score=51.55 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
++.|.|++||||||++..++......|-+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999888766677765443
No 312
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.34 E-value=0.0031 Score=57.68 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=31.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh--cCCeEEEEecCCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENAL 160 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~--~g~~v~~i~~E~~~ 160 (315)
-++.|.|++||||||++..++..... .++.+.+++.+.-.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 48999999999999999888766543 35678888877643
No 313
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.34 E-value=0.0034 Score=55.99 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
+..++|+||||+|||+++..++... +.++++++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 4568899999999999999988766 55677777543
No 314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.33 E-value=0.0026 Score=54.10 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH-----hcC-CeEEEEecCCCCChHHHHHcCCCCCCe-EEeCCC-CHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQ-----KLG-GYCAYLDVENALDPSLAEAMGIDAENL-LIAQPD-SAENLLSVVD 191 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~-----~~g-~~v~~i~~E~~~~~~~~~~~g~~~~~l-~i~~~~-~~e~~~~~i~ 191 (315)
..+++++|+||+|||++|..++...+ +.| .++.|...++-..... ..... ..++ ...+.. ..+...+++.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~-~~~~~-k~~~~~~~~~~~~~~~~~~~~~ 82 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHT-YIETD-AKKLPKSTDEQLSAHDMYEWIK 82 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCE-EEECC-TTTCSSCCSSCEEGGGHHHHTT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccc-ccchh-hhhccccCcccccHHHHHHHhh
Confidence 34899999999999999988776654 455 4443444332111000 00000 0000 000000 1122222211
Q ss_pred HHHHcCCccEEeehhHhhhccccccCCCccCCChHHHHHHHHHHHHHHHHHHhccCcEEEEEecccccc
Q 021239 192 TLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVRFSA 260 (315)
Q Consensus 192 ~l~~~~~~~lVVIDsl~~l~~~~~~~~~~~~~~~~~q~r~i~~~l~~L~~~~~~~~i~VI~inq~~~~~ 260 (315)
...+...+||||..+.+++......+. . +.+..+. .-+..+..+|++.|....+
T Consensus 83 --~~~~~~~vliIDEAq~l~~~~~~~~e~--------~----rll~~l~-~~r~~~~~iil~tq~~~~l 136 (199)
T 2r2a_A 83 --KPENIGSIVIVDEAQDVWPARSAGSKI--------P----ENVQWLN-THRHQGIDIFVLTQGPKLL 136 (199)
T ss_dssp --SGGGTTCEEEETTGGGTSBCCCTTCCC--------C----HHHHGGG-GTTTTTCEEEEEESCGGGB
T ss_pred --ccccCceEEEEEChhhhccCccccchh--------H----HHHHHHH-hcCcCCeEEEEECCCHHHH
Confidence 123457899999999987421111110 1 1222232 1245688899999886554
No 315
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.31 E-value=0.0026 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++.++.|.|+|||||||++..++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999987665
No 316
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.30 E-value=0.0022 Score=52.43 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=24.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
.++.|.|+|||||||++..++.. .....+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecH
Confidence 47899999999999999988762 123566765
No 317
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0026 Score=54.07 Aligned_cols=27 Identities=7% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+|.++.|.||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 368999999999999999999887654
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.26 E-value=0.0028 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++.++.|.|+|||||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999988554
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.25 E-value=0.0031 Score=54.41 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
.-+.+..++.|.|||||||+|.|..++... ...++++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIst 60 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSS 60 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcH
Confidence 355678899999999999999999988776 3456665
No 320
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.25 E-value=0.003 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+..+.|.|++||||||++..++...
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999988765
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.25 E-value=0.0029 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
..+.++.|.|+||+||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999888665
No 322
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.24 E-value=0.0021 Score=55.55 Aligned_cols=36 Identities=31% Similarity=0.134 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
..++|.++.|.|++|+||||++..++.. ++.+.+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999877654 55666554
No 323
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.24 E-value=0.0054 Score=57.26 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=35.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
..+..+.|.|++|+|||+++..++......|.+++++|.+..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 356678999999999999999999988888888888886543
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.003 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887654
No 325
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.20 E-value=0.0049 Score=52.93 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.1
Q ss_pred cEEEE-EecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 121 RIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 121 ~i~~i-~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
.++.| .+..|+||||++.++|..+++.|.+|+++|++..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 34445 4568999999999999999999999999999864
No 326
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.20 E-value=0.005 Score=55.03 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCcEEEEEe---cCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 119 KGRIVEIYG---REASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 119 ~G~i~~i~G---~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
.+.++.|++ ..|+||||++.++|..++..|.+|+++|++....
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 355677776 8999999999999999999999999999987643
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.20 E-value=0.0039 Score=50.38 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.3
Q ss_pred cEEEEEecCCCChhHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHV 140 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~l 140 (315)
.++.|.|+|||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999888
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.19 E-value=0.0016 Score=60.54 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
+++|.++.|.||+|+|||||+..++.......+ .+.++
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ie 209 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQR-LITIE 209 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC-EEEEE
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce-EEEEC
Confidence 458999999999999999999888766544444 44444
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.17 E-value=0.0031 Score=52.98 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=28.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
..++.|.|++|+||||++..++... | ..+++.+.-..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 5689999999999999999888765 2 44677665443
No 330
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.16 E-value=0.0061 Score=53.58 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=35.2
Q ss_pred CcEEEE-EecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 120 GRIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 120 G~i~~i-~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
+.++.| .+..|+||||++.++|..+++.|.+|+++|++....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~ 60 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGP 60 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 445555 566899999999999999999999999999987654
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.15 E-value=0.0034 Score=52.83 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
|+.+.|.|++|+||||++..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999999988776
No 332
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.15 E-value=0.0052 Score=59.02 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
...-++|+||||+|||+++..++.....
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4456799999999999999999888754
No 333
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.15 E-value=0.0027 Score=62.36 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCC-eEEEEecC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-YCAYLDVE 157 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~-~v~~i~~E 157 (315)
+++|.++.|.|++||||||++..++......++ .+.|++.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 457999999999999999999999888765554 57677753
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.08 E-value=0.0035 Score=55.10 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+++|+|+|||||||++..++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998765
No 335
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.08 E-value=0.0022 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=28.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
++.|.|++||||||++..++......|..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6899999999999999999888766666666554
No 336
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.08 E-value=0.0066 Score=51.63 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=48.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCCh-HHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCcc
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~-~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~ 200 (315)
+.+..+..|+||||++.++|..+++.| +|+++|++..... .+...-.++. .+.... .+..+ ....+
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~---~vi~~~-------~l~~l--~~~yD 69 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPF---KVVDER-------QAAKY--APKYQ 69 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSS---EEEEGG-------GHHHH--GGGCS
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCc---ceeCHH-------HHHHh--hhcCC
Confidence 344467789999999999999999999 9999999876433 1222100111 111111 23333 23679
Q ss_pred EEeehhHhh
Q 021239 201 VIVVDSVAA 209 (315)
Q Consensus 201 lVVIDsl~~ 209 (315)
+||||.-..
T Consensus 70 ~viiD~p~~ 78 (209)
T 3cwq_A 70 NIVIDTQAR 78 (209)
T ss_dssp EEEEEEECC
T ss_pred EEEEeCCCC
Confidence 999997665
No 337
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0031 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=18.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++.++.|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999998886543
No 338
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.06 E-value=0.002 Score=56.69 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=41.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCChHHHHHcCCCCCCeEEeCCCCHHHHHHHHHHHHHcCCccE
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDV 201 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~~~~~~~~g~~~~~l~i~~~~~~e~~~~~i~~l~~~~~~~l 201 (315)
-++|+||||+|||+++..++... +.++++++...-... ..|... .....++... ....+.+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----~~~~~~--------~~~~~~~~~a----~~~~~~v 106 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM----FVGLGA--------SRVRDLFETA----KKQAPSI 106 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS----CSSSCS--------SSSSTTHHHH----HHSCSCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh----hcchHH--------HHHHHHHHHH----HhcCCeE
Confidence 38899999999999999998765 334444433221110 001100 0111222222 2346899
Q ss_pred EeehhHhhhcc
Q 021239 202 IVVDSVAALIP 212 (315)
Q Consensus 202 VVIDsl~~l~~ 212 (315)
++||.+..+..
T Consensus 107 l~iDEid~l~~ 117 (268)
T 2r62_A 107 IFIDEIDAIGK 117 (268)
T ss_dssp EEESCGGGTTC
T ss_pred EEEeChhhhcc
Confidence 99999998864
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.06 E-value=0.0042 Score=52.96 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+|.++.|.|+|||||||++..++... + ..++++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF---H--AAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeh
Confidence 56789999999999999999988765 2 345665
No 340
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.06 E-value=0.025 Score=49.47 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=31.8
Q ss_pred CcEEEEEec-CCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 120 GRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 120 G~i~~i~G~-~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
...+.|+|. +|+|||+++..++..+.++|.+|.||-
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 456777776 999999999999999999999999986
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.06 E-value=0.0039 Score=53.52 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+..++.++.|.|+|||||||++..++...
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999887654
No 342
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.06 E-value=0.0042 Score=52.00 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=27.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
.+|.++.|.|++||||||++..++... .|-+++.++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 357899999999999999998887654 233454444
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.04 E-value=0.0037 Score=54.86 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++|.++.|.|++||||||++..++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999887443
No 344
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.04 E-value=0.0035 Score=56.47 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcC--C-eEEEEecCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLG--G-YCAYLDVENA 159 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g--~-~v~~i~~E~~ 159 (315)
-.++.++.|+|++|+|||||+..++......+ . .+.+++.+.-
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 35678999999999999999998887775432 2 3334366543
No 345
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.04 E-value=0.0036 Score=57.28 Aligned_cols=24 Identities=38% Similarity=0.338 Sum_probs=21.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
..++|+||||+||||++..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999998776
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.03 E-value=0.0042 Score=54.34 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=30.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh-----cCCeEEEEecCCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENAL 160 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~-----~g~~v~~i~~E~~~ 160 (315)
-++.|.|++||||||++..++..... .+..+++++++.-.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 58999999999999999988775432 24567788877544
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.02 E-value=0.0048 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
..+.++.|.|+|||||||++..++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999888765
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.01 E-value=0.0048 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.++.|.|+|||||||++..++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999888765
No 349
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.00 E-value=0.0068 Score=53.88 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=29.6
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 107 ~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.|...+. |..++-..++|+||||+|||.|+..+|...
T Consensus 92 ~l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 92 VFLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3666676 544767789999999999999999887754
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.99 E-value=0.0047 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.5
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+| +++|+|++|+||||++..+....
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 4466 99999999999999998876643
No 351
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.99 E-value=0.0051 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.++.|.|++||||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887655
No 352
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.96 E-value=0.008 Score=51.52 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=31.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
-+|.++.|.|++|+||||++..++......|.+|+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 36889999999999999999999888877777775544
No 353
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.91 E-value=0.0048 Score=59.01 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=31.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCC-eEEEEecCC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGG-YCAYLDVEN 158 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~-~v~~i~~E~ 158 (315)
.++|.|+||+|||+++..++..+...+. .++.+.+-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~ 84 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTH 84 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcH
Confidence 9999999999999999999998887776 676666543
No 354
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.87 E-value=0.0055 Score=56.79 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.+...++|+||||+|||++|..++... +.++++++..
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 345678999999999999999888765 5567777643
No 355
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.84 E-value=0.0057 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+|..+.|.|+|||||||++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999988766
No 356
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.83 E-value=0.0039 Score=56.43 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=33.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.+..++|+|+||+|||++|..++......+.+.+++++....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 455789999999999999999887665667788888876543
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.82 E-value=0.0059 Score=52.12 Aligned_cols=26 Identities=31% Similarity=0.178 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.++.|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999988765
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.81 E-value=0.005 Score=50.45 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=24.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.+.|.|+|||||||++..++... + +.|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 58899999999999999988765 2 4466643
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.81 E-value=0.0051 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++.|.|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999887765
No 360
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.78 E-value=0.006 Score=52.07 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=25.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+++|.|||||||+|.|..++... .+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence 57899999999999999998776 35577753
No 361
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.77 E-value=0.0062 Score=53.48 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCcEEEE-EecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCC
Q 021239 119 KGRIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i-~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~ 160 (315)
.+.++.| .+..|+||||++.++|..++ +|.+|+++|++...
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 4556666 55689999999999999999 89999999998764
No 362
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.76 E-value=0.0073 Score=59.57 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=33.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+.+++|.|+||+||||++..++..+...+.++++...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 5799999999999999999999888888889988764
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.74 E-value=0.0094 Score=51.69 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=29.5
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhc----CCeEEEEe
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLD 155 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~----g~~v~~i~ 155 (315)
|-+.+|.++.|.|++|+||||++..++...... |..|.+..
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 445689999999999999999999998887766 77776544
No 364
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.74 E-value=0.0069 Score=55.88 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=27.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++..++|+||||+|||++|..++... +.+.+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45678999999999999999988765 455555553
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.72 E-value=0.0071 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.++.|.|+|||||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887654
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.71 E-value=0.0072 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++..+.|.|+|||||||++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999988665
No 367
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.70 E-value=0.01 Score=56.13 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=28.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
+...+++|+|+|||||||++..++... ...+++.+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 356899999999999999998876533 3456666553
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.66 E-value=0.0071 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68899999999999999988765
No 369
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.64 E-value=0.0075 Score=49.90 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=25.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
.++.|.|++|+|||||+..++......|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~ 32 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLR 32 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCc
Confidence 478999999999999999999888776533
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.63 E-value=0.0073 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887665
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.63 E-value=0.0078 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
...++.|.|++||||||++..++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999998887653
No 372
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.61 E-value=0.015 Score=50.60 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe-EEEE
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY-CAYL 154 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~-v~~i 154 (315)
+.--+|.++.|.|++|+||||++..++......|.+ +.+.
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 344468899999999999999999999888777777 4444
No 373
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.60 E-value=0.038 Score=52.95 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
...++++.|.||+||||++..++......+..+..++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 34589999999999999999998876655555555553
No 374
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.58 E-value=0.036 Score=50.32 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
...+++|+||+|+|||+|+..++... + +.+++.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~---~--~~iis~D 42 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL---P--VELISVD 42 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS---C--EEEEECC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC---C--CcEEecc
Confidence 34689999999999999999997664 2 3456653
No 375
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.57 E-value=0.0013 Score=65.43 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q 021239 123 VEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.|.|++|+|||||+..++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8999999999999998887654
No 376
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.57 E-value=0.007 Score=51.49 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.|..++|.||+|+|||++++.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3677999999999999999988654
No 377
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.55 E-value=0.014 Score=57.19 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+|..++|+||||+|||+++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999988776
No 378
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.54 E-value=0.011 Score=52.80 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=32.8
Q ss_pred EEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 122 IVEIY-GREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 122 i~~i~-G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
++.|+ +..|+||||++.++|..++..|.+|+++|++.
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45554 66899999999999999999999999999988
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0069 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
++.|.|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 380
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.51 E-value=0.008 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
++.|.|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999988876
No 381
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.50 E-value=0.0087 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||||+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
No 382
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.50 E-value=0.0076 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+.+.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999887653
No 383
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.50 E-value=0.0074 Score=57.25 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCCCCcE--EEEEecCCCChhHHHHHHHHH
Q 021239 116 GLPKGRI--VEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 116 Gl~~G~i--~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++|.+ +.|.|++|+|||||+..++..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4779999 999999999999999888754
No 384
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.49 E-value=0.0077 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++.|.|++||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999887765
No 385
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.48 E-value=0.0095 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-.++.|.|++||||||++..++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887665
No 386
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.48 E-value=0.008 Score=55.23 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
.++.+++|.||+|+|||+|+..+|... ..-+|+.+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds 73 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDK 73 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccc
Confidence 456799999999999999999987644 244666554
No 387
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.47 E-value=0.015 Score=49.39 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=29.5
Q ss_pred EEEEEe-cCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYG-REASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G-~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
.+.|++ .+|+||||++.++|...+++|.+|++++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 345555 5899999999999999999999999987
No 388
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.44 E-value=0.011 Score=54.90 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=29.5
Q ss_pred cCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHH
Q 021239 103 TGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 103 TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~ 145 (315)
.|+.+|...+ +|.++.|.|+||+|||||+..++....
T Consensus 204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 204 DGLKPLEEAL------TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp BTHHHHHHHH------TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCHHHHHHhc------CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 4677776655 478999999999999999988875543
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.44 E-value=0.0057 Score=59.51 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=28.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
++|..++|+||+||||||++..++... ....+++.+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitie 294 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIE 294 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEc
Confidence 578899999999999999998776554 3344454443
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.43 E-value=0.006 Score=53.69 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.1
Q ss_pred CCCC---CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPK---GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~---G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+.+ |..+.|.|++|+||||++..++...
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456 8999999999999999999888765
No 391
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.42 E-value=0.013 Score=50.69 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCC
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENA 159 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~ 159 (315)
.+|.++.|.|++|+||||++..++..... .|.+|.++.-|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 46889999999999999999999988877 7777776454443
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.42 E-value=0.0091 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998887554
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.42 E-value=0.017 Score=48.89 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=30.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
..+.|.|++|+|||||+..++...... .++..++.+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 378999999999999999999886544 67777776654
No 394
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.41 E-value=0.019 Score=49.13 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCC-eEEE
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGG-YCAY 153 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~-~v~~ 153 (315)
+|.++.|.|++|+||||.+..++......|. .+++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 4789999999999999999999888877776 5543
No 395
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.41 E-value=0.03 Score=59.28 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=61.2
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh----cCCeEEEEecCCCCChH-------HHHHcCCCCCC
Q 021239 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLDVENALDPS-------LAEAMGIDAEN 174 (315)
Q Consensus 106 ~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~----~g~~v~~i~~E~~~~~~-------~~~~~g~~~~~ 174 (315)
..|..+|. .+-....++.|+|++|+||||||.+++..... ....+.|++........ .+..++.....
T Consensus 134 ~~l~~~l~-~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (1249)
T 3sfz_A 134 HAIQQKLW-KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESF 212 (1249)
T ss_dssp HHHHHHHH-TTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHh-hccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhccc
Confidence 34555553 22234568999999999999999998766422 34578899986654321 22333322110
Q ss_pred eEEeCCCCHHHHHHHHHHHHHcC-CccEEeehhHh
Q 021239 175 LLIAQPDSAENLLSVVDTLTKSG-SIDVIVVDSVA 208 (315)
Q Consensus 175 l~i~~~~~~e~~~~~i~~l~~~~-~~~lVVIDsl~ 208 (315)
.-..+...+++.+.++..+... +.-+||+|.+.
T Consensus 213 -~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 213 -SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp -CSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred -ccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence 0112345677777777665432 35699999764
No 396
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.37 E-value=0.012 Score=50.73 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
.+..+.|.|+|||||||++..++... + +.++++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CceecH
Confidence 45689999999999999999998776 2 446665
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.36 E-value=0.013 Score=53.89 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=26.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
.++.|+||+||||||++..++...- +.+++.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceecccc
Confidence 4899999999999999999887652 56677654
No 398
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=95.35 E-value=0.0086 Score=55.46 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.7
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCCCC
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~~~ 161 (315)
.+..+..|+||||++.++|..++..|.+|+++|++....
T Consensus 5 av~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 5 SFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp EBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCT
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Confidence 334477899999999999999999999999999987644
No 399
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.35 E-value=0.0094 Score=53.01 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
.+.|.||+|+|||||+..++.......+.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~ 34 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSW 34 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 4789999999999999998877655444443
No 400
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.33 E-value=0.028 Score=56.37 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=50.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHh--cCCeEEEEecC---CCCChHHHHHcCCCCCC---------eEEeCCCC
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVE---NALDPSLAEAMGIDAEN---------LLIAQPDS 182 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~--~g~~v~~i~~E---~~~~~~~~~~~g~~~~~---------l~i~~~~~ 182 (315)
++++..+.|.|++|+|||||+..++..... ..+.+ .+.. .....++.+.+.+..+. +.+.+...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 467889999999999999999998865432 12222 1110 00111233333433321 22333222
Q ss_pred HHHHHHHHHHHHHcCCccEEeehhHh
Q 021239 183 AENLLSVVDTLTKSGSIDVIVVDSVA 208 (315)
Q Consensus 183 ~e~~~~~i~~l~~~~~~~lVVIDsl~ 208 (315)
.+++...+...+...+..++|+|...
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTT
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCc
Confidence 34444555555556678899999543
No 401
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.29 E-value=0.046 Score=51.37 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=25.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.++.|.||+|+|||+++..++...- ..+++.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-----~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-----CeEeecC
Confidence 4789999999999999999987762 2356654
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.29 E-value=0.013 Score=52.93 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=30.2
Q ss_pred cCcHHHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q 021239 103 TGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (315)
Q Consensus 103 TG~~~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~ 152 (315)
.|+++|=..+ .|.++.|.|++|+|||||+..++ ......+.+.
T Consensus 154 ~gi~~L~~~l------~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 154 EGIDELVDYL------EGFICILAGPSGVGKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp TTHHHHHHHT------TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred CCHHHHHhhc------cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence 3555554443 57899999999999999999988 4433344443
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.26 E-value=0.013 Score=53.59 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=25.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.+++|+||+|+||||++..++... .+.+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-----~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-----PCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-----CCcEEecc
Confidence 489999999999999999987654 25566664
No 404
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.25 E-value=0.012 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999887755
No 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.24 E-value=0.025 Score=59.39 Aligned_cols=44 Identities=32% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHH--HHh-cCCeEEEEecCCCCCh
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKE--AQK-LGGYCAYLDVENALDP 162 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~--~~~-~g~~v~~i~~E~~~~~ 162 (315)
...++.|+|++|+||||||.+++.. ... -...++|++.......
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 3579999999999999999998753 222 2446899998776654
No 406
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.24 E-value=0.01 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++|+||+|+||||++..+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999998876654
No 407
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.22 E-value=0.065 Score=50.67 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCChhHHH-HHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLA-LHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtla-l~la~~~~~~g~~v~~i~~ 156 (315)
+|..+++.||+|+|||..+ ..++..+...|.+++|+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 4788999999999999986 4455566677888999884
No 408
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.18 E-value=0.0082 Score=57.88 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=26.6
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCe
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~ 150 (315)
+++ +++.|.||+|+|||||+..++.......+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 567 999999999999999998888766543333
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.18 E-value=0.013 Score=48.74 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=24.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
..++.|.|++||||||++..++.. | +.+++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----C--CEEEccc
Confidence 458999999999999999888763 3 3456654
No 410
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.16 E-value=0.013 Score=51.04 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.-++.|.||+|+||||++..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887665
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.16 E-value=0.013 Score=53.22 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=25.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
-.+++|.|++|+||||++..++... .+.+++.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~ 37 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIE 37 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEEC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEE
Confidence 3589999999999999998887653 344444444
No 412
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.15 E-value=0.02 Score=58.27 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
+...-++|+||||+|||+++..++.....
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 34456899999999999999999888754
No 413
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.15 E-value=0.015 Score=50.13 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
..++|.++.|.|++|+||||++..++...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999998887654
No 414
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.15 E-value=0.0089 Score=47.75 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=17.2
Q ss_pred EEEEecCCCChhHHHHHHH
Q 021239 123 VEIYGREASGKTTLALHVI 141 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la 141 (315)
+.|.|++|+|||+|+..++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999998774
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.13 E-value=0.013 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
.+.++.|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988865
No 416
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.13 E-value=0.022 Score=53.74 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~~ 159 (315)
..-++|.|++|+|||+++..++.++...|..++++|....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge 92 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGD 92 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 3468999999999999998899998888999999996543
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.07 E-value=0.014 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
++.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999887765
No 418
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.05 E-value=0.014 Score=57.99 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENAL 160 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~ 160 (315)
+.+++|.||||+|||+++..++..... .+.++++...-+..
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A 236 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA 236 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHH
Confidence 458999999999999999998888776 57788877754433
No 419
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.05 E-value=0.011 Score=53.60 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=26.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
|.-++|+||||+|||+++..++... +.++..+.+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~ 79 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQF 79 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEec
Confidence 4579999999999999999887654 445555554
No 420
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.04 E-value=0.017 Score=51.46 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcC--CeEEEEec
Q 021239 123 VEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDV 156 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~~~~~g--~~v~~i~~ 156 (315)
++|+||||+|||+++..++......+ ..+++++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 89999999999999999988764322 23444553
No 421
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.03 E-value=0.029 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-++|.|++|+|||+|+..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999887653
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.98 E-value=0.016 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988765
No 423
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.97 E-value=0.007 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
+++|..+.|.|++|+|||||...++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999987754
No 424
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.93 E-value=0.011 Score=54.82 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCCCC--CcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 115 GGLPK--GRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 115 GGl~~--G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
--+++ |+.+.|.|++|+|||||+..++.....
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34566 999999999999999999988876543
No 425
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.91 E-value=0.019 Score=56.54 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcC-CeEEEEecC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLG-GYCAYLDVE 157 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g-~~v~~i~~E 157 (315)
.|.++.|.|.+||||||++..++......| .++.+++.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 567999999999999999999988877666 677888754
No 426
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.88 E-value=0.012 Score=58.19 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=28.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
..|..++|+||||+||||++..++..........+++.
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 46689999999999999999998876644433444443
No 427
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.86 E-value=0.027 Score=56.02 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=32.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
+|.++.|.|.+||||||++..++......|.++++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 68899999999999999999998887666777777763
No 428
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.82 E-value=0.021 Score=55.92 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=33.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
+.++.|.|.+|+||||++..++......|.++.+++.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 77899999999999999999988877778888888854
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.81 E-value=0.018 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
.|.-++|.|++|+||||+++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 366799999999999999998875
No 430
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.75 E-value=0.0067 Score=54.74 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=24.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
..|.++.|.||||+|||||+..++.......+.+
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 3578999999999999999988865443333344
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.72 E-value=0.02 Score=47.75 Aligned_cols=31 Identities=42% Similarity=0.568 Sum_probs=24.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
++.|.|++||||||++..++... | +.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence 78999999999999999887655 2 3456643
No 432
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.71 E-value=0.029 Score=53.51 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.3
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVI 141 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la 141 (315)
.++|.|+||+|||||...++
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~ 44 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIA 44 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHE
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999998874
No 433
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.67 E-value=0.029 Score=47.47 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=28.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
-.+.|.|.+|+|||||+..++...... .++..+..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~ 75 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDV 75 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCC
Confidence 468888999999999999999886544 5565565544
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.65 E-value=0.018 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.++.|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988763
No 435
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.53 E-value=0.0052 Score=55.83 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=23.3
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+.+|.++.|.|+||+|||||+..++.......+.+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I 204 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 204 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccce
Confidence 45689999999999999999988876544333333
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.53 E-value=0.023 Score=52.70 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.9
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+++| +++|+||+|+||||+.-.++...
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 3456 89999999999999987776553
No 437
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.52 E-value=0.014 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-++|+||||+|||+++..++...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 39999999999999999888755
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.49 E-value=0.022 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.+++|.||+|+|||+++..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999987654
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.47 E-value=0.024 Score=47.67 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=26.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E~ 158 (315)
...++.|+|.+||||||++..++... | +.+++.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~ 45 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDR 45 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcH
Confidence 45689999999999999998887653 3 44566543
No 440
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.46 E-value=0.013 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~ 142 (315)
+.++.|.||+|+|||||+..++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 33999999999999999988876
No 441
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.45 E-value=0.0056 Score=63.81 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=28.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHHHHhcCCeE
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v 151 (315)
+++|+++.|.||+|+|||||+..++.......|.+
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I 730 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 67899999999999999999988876654444444
No 442
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.44 E-value=0.029 Score=52.42 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=34.2
Q ss_pred CCcEEEEE-ecCCCChhHHHHHHHHHHH------hcCCeEEEEecCCCC
Q 021239 119 KGRIVEIY-GREASGKTTLALHVIKEAQ------KLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i~-G~~GsGKTtlal~la~~~~------~~g~~v~~i~~E~~~ 160 (315)
.+.++.|+ |-.|+||||++.++|...+ ..|.+|+++|++...
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 45555555 7799999999999999988 468999999998643
No 443
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.43 E-value=0.018 Score=60.11 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
+++|+++.|.||+|+|||||+..++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999999998874
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.42 E-value=0.031 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+++|+||+|+|||++.-.+....
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999987776544
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.37 E-value=0.025 Score=50.44 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVI 141 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la 141 (315)
..++.|+|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 446
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=94.35 E-value=0.024 Score=53.03 Aligned_cols=42 Identities=7% Similarity=0.058 Sum_probs=26.7
Q ss_pred CCcEEEEE-ecCCCChhHHHHHHHHHHH------hcCCeEEEEecCCCC
Q 021239 119 KGRIVEIY-GREASGKTTLALHVIKEAQ------KLGGYCAYLDVENAL 160 (315)
Q Consensus 119 ~G~i~~i~-G~~GsGKTtlal~la~~~~------~~g~~v~~i~~E~~~ 160 (315)
.+.++.|+ |-.|+||||++.++|..++ ..|.+|+++|++...
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 45555555 7799999999999999988 579999999998543
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.31 E-value=0.028 Score=52.02 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=22.8
Q ss_pred CCCcE--EEEEecCCCChhHHHHHHHHHHH
Q 021239 118 PKGRI--VEIYGREASGKTTLALHVIKEAQ 145 (315)
Q Consensus 118 ~~G~i--~~i~G~~GsGKTtlal~la~~~~ 145 (315)
++|.. +.|.|++|+||||++..++....
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34555 99999999999999998887653
No 448
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.027 Score=57.77 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=34.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCCh
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDP 162 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~ 162 (315)
+.+++|.||||+|||+++..++..+.. .+.++++...-+....
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d 418 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 418 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Confidence 458999999999999999888877765 5778888876554433
No 449
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.24 E-value=0.029 Score=57.49 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=32.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENAL 160 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~ 160 (315)
+.+++|.||||+|||+++..++..... .+.+++....-+..
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A 412 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA 412 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHH
Confidence 458999999999999999998888776 56788777654433
No 450
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.20 E-value=0.029 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
+|.-+.|.|++|+|||||...++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999988864
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.11 E-value=0.034 Score=47.99 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+|.++.|.|.+|+||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999998887664
No 452
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.10 E-value=0.17 Score=51.62 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=27.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHh-c--CCeEEEEe
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQK-L--GGYCAYLD 155 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~-~--g~~v~~i~ 155 (315)
..|+.+++.||+|+|||+++-.++..... . +..++++.
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 35789999999999999977776554432 2 45577665
No 453
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.09 E-value=0.062 Score=46.16 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHh-cC----CeEEEEecCCCCChHH----HHHcCCCCC----------------
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQK-LG----GYCAYLDVENALDPSL----AEAMGIDAE---------------- 173 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~-~g----~~v~~i~~E~~~~~~~----~~~~g~~~~---------------- 173 (315)
.|+.+++.|++|+|||++...++..... .+ ..+++........... ++.++....
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRP 154 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCS
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCC
Confidence 4789999999999999887776655432 22 2666665422221112 222232211
Q ss_pred --CeEEeCCCCHHHHHHHHHHHHHcCCccEEeehhHhh
Q 021239 174 --NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAA 209 (315)
Q Consensus 174 --~l~i~~~~~~e~~~~~i~~l~~~~~~~lVVIDsl~~ 209 (315)
++.+ .+...+...+... -.++++||||....
T Consensus 155 ~~~Ivv---~Tpg~l~~~l~~~--l~~~~~lVlDEah~ 187 (235)
T 3llm_A 155 HASIMF---CTVGVLLRKLEAG--IRGISHVIVDEIHE 187 (235)
T ss_dssp SSEEEE---EEHHHHHHHHHHC--CTTCCEEEECCTTS
T ss_pred CCeEEE---ECHHHHHHHHHhh--hcCCcEEEEECCcc
Confidence 1222 1345555555442 35789999998875
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.09 E-value=0.029 Score=46.46 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+.|.|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999887643
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.09 E-value=0.042 Score=47.13 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
.+|.++.|.|++|+||||.+..++.....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999888877643
No 456
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.08 E-value=0.029 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.4
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
+.+| ++.|+|++|+|||+++-.+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 3456 999999999999999988764
No 457
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.93 E-value=0.031 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+.|.|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998765
No 458
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=93.93 E-value=0.074 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=21.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q 021239 121 RIVEIYGREASGKTTLALHVIKEAQK 146 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~~~ 146 (315)
-.+.+.|.+++|||||+..+......
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~ 37 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAA 37 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhh
Confidence 45899999999999999999876443
No 459
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.93 E-value=0.084 Score=44.39 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEec
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~ 156 (315)
++.|-|..||||||.+..++......|.+|++...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 57889999999999999998888888888876654
No 460
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.92 E-value=0.057 Score=45.81 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=27.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
|.++.|-|..||||||.+..++.... .|.+|++..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 56899999999999999988877664 566776544
No 461
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.88 E-value=0.18 Score=44.17 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=55.4
Q ss_pred cEEEEEec-CCCChhHHHHHHHHHHHhcCCeEEEEec-----C-CCCChH-HHHHcCCCC-CCeEEeCC-----------
Q 021239 121 RIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDV-----E-NALDPS-LAEAMGIDA-ENLLIAQP----------- 180 (315)
Q Consensus 121 ~i~~i~G~-~GsGKTtlal~la~~~~~~g~~v~~i~~-----E-~~~~~~-~~~~~g~~~-~~l~i~~~----------- 180 (315)
..+.|+|. +|+|||+++..++....++|.+|.||-. . ...+.. ..+..|... .+.+....
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~ 106 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHA 106 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHc
Confidence 45667776 6999999999999999999999999862 1 112222 233345432 23332221
Q ss_pred ----CCHHHHHHHHHHHHHcCCccEEeehhHhhhc
Q 021239 181 ----DSAENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (315)
Q Consensus 181 ----~~~e~~~~~i~~l~~~~~~~lVVIDsl~~l~ 211 (315)
...+++.+.+.++ ..+.+++|||....++
T Consensus 107 ~~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~ 139 (251)
T 3fgn_A 107 GMALPARDQIVRLIADL--DRPGRLTLVEGAGGLL 139 (251)
T ss_dssp TCCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTT
T ss_pred CCCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCc
Confidence 1233444444333 3468999999988776
No 462
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.87 E-value=0.038 Score=51.18 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
+++| ++.|+||+|+||||+...+..
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4577 999999999999999988875
No 463
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.81 E-value=0.039 Score=52.13 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
+.+|.++.|.||+|+||||++..++..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346889999999999999999887754
No 464
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.73 E-value=0.025 Score=54.74 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=27.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEecC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~~E 157 (315)
.|.-++|+||||+|||++|..++... ..+....++...
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~ 77 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR 77 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh
Confidence 45589999999999999998887655 223444455543
No 465
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.72 E-value=0.014 Score=54.56 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
-+.+| ++.|+|++|+|||||+..+....
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 36789 99999999999999997765443
No 466
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.71 E-value=0.032 Score=53.14 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=24.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
-++++||||+|||+++..+|... +.+.+.++
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc---CCCceeec
Confidence 48899999999999999988765 33444444
No 467
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.70 E-value=0.035 Score=44.59 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
.+.|.|++|+|||||...++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998864
No 468
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.66 E-value=0.052 Score=46.67 Aligned_cols=44 Identities=23% Similarity=0.099 Sum_probs=29.1
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCChhHHHHHHHHHHHh----cCCeEEEEec
Q 021239 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLDV 156 (315)
Q Consensus 107 ~LD~~l~~GGl~~G~i~~i~G~~GsGKTtlal~la~~~~~----~g~~v~~i~~ 156 (315)
.++.++. |.-+++.+|+|+|||......+..... .+.+++|+..
T Consensus 59 ~i~~~~~------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~P 106 (245)
T 3dkp_A 59 AIPVMLH------GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISP 106 (245)
T ss_dssp HHHHHHT------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECS
T ss_pred HHHHHhC------CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeC
Confidence 3455565 244899999999999875554444433 3457888773
No 469
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.54 E-value=0.072 Score=52.77 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh----cCCeEEEEe
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLD 155 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~----~g~~v~~i~ 155 (315)
+.+++|.|+||+||||++..++..+.. .+.+++...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A 203 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe
Confidence 679999999999999999888777663 344666554
No 470
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.43 E-value=0.056 Score=52.42 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHh-cC-CeEEEEecCC
Q 021239 119 KGRIVEIYGREASGKTTLALHVIKEAQK-LG-GYCAYLDVEN 158 (315)
Q Consensus 119 ~G~i~~i~G~~GsGKTtlal~la~~~~~-~g-~~v~~i~~E~ 158 (315)
.|.++.|.|.+||||||++..++..... .| ..+.|++.+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5779999999999999999999988875 43 4566777665
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.41 E-value=0.033 Score=45.60 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.6
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
-+.|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998875
No 472
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.30 E-value=0.082 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.1
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVI 141 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la 141 (315)
.+.|.|+||+|||||...++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~ 24 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA 24 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998875
No 473
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.21 E-value=0.048 Score=43.28 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.17 E-value=0.061 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q 021239 121 RIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 121 ~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.+++|+||+|+||||++-.+....
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 499999999999999987776544
No 475
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.17 E-value=0.051 Score=53.81 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=31.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhcC----CeEEEEecCCC
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEAQKLG----GYCAYLDVENA 159 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~~~~g----~~v~~i~~E~~ 159 (315)
...+.|.|+||||||+.+..-+......+ .+++++.+-..
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNK 65 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHH
Confidence 34578999999999999988777777653 57888886443
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.12 E-value=0.056 Score=42.53 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888754
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.11 E-value=0.054 Score=45.73 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
+.++.|.|++|+||||++..++...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999998876543
No 478
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.10 E-value=0.051 Score=42.84 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999988743
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.04 E-value=0.051 Score=44.25 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
.+.|.|++|+|||||+..++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999875
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.92 E-value=0.03 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHHHHH
Q 021239 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (315)
Q Consensus 118 ~~G~i~~i~G~~GsGKTtlal~la~~~ 144 (315)
.++.++.|.|.+|+||||++..++...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 477899999999999999998776543
No 481
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.92 E-value=0.055 Score=43.28 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.4
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
-+.|.|++|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 378999999999999988763
No 482
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.86 E-value=0.058 Score=42.62 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||||+..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888743
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.81 E-value=0.059 Score=42.91 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=17.5
Q ss_pred EEEEecCCCChhHHHHHHH
Q 021239 123 VEIYGREASGKTTLALHVI 141 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la 141 (315)
+.|.|++|+|||+|+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999998875
No 484
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.81 E-value=0.061 Score=42.70 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.1
Q ss_pred EEEEecCCCChhHHHHHHHH
Q 021239 123 VEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~ 142 (315)
+.+.|++|+|||+|+..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999988874
No 485
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=92.78 E-value=0.34 Score=48.07 Aligned_cols=40 Identities=23% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCCCcEEEEEecCCCChhHH-HHHHHHHHHhcCCeEEEEec
Q 021239 117 LPKGRIVEIYGREASGKTTL-ALHVIKEAQKLGGYCAYLDV 156 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtl-al~la~~~~~~g~~v~~i~~ 156 (315)
+..|..+++.+++|+|||+. ++.++..+...+.+++|+..
T Consensus 183 l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~P 223 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAP 223 (618)
T ss_dssp GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 34588999999999999996 57777777677778998883
No 486
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.74 E-value=0.07 Score=42.23 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q 021239 123 VEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 123 ~~i~G~~GsGKTtlal~la~~ 143 (315)
+++.|++|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988754
No 487
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.73 E-value=0.13 Score=44.38 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=30.4
Q ss_pred EEEEEec-CCCChhHHHHHHHHHHHhcCCeEEEEe
Q 021239 122 IVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLD 155 (315)
Q Consensus 122 i~~i~G~-~GsGKTtlal~la~~~~~~g~~v~~i~ 155 (315)
.+.|+|. +|+|||+++..++..+.++|.+|.|+-
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 4667776 999999999999999999999999985
No 488
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.72 E-value=0.066 Score=42.43 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999888754
No 489
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.061 Score=42.71 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.5
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~ 142 (315)
-+.+.|++|+|||||+..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988864
No 490
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.066 Score=43.84 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q 021239 120 GRIVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 120 G~i~~i~G~~GsGKTtlal~la~~ 143 (315)
.--++|.|++|+|||||+..++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999888654
No 491
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.58 E-value=0.065 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-++|.|++|+|||||+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888643
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.57 E-value=0.07 Score=42.43 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.53 E-value=0.068 Score=42.30 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+.+.|++|+|||||+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999888753
No 494
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.52 E-value=0.067 Score=43.00 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+.+.|++|+|||||+..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888653
No 495
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.52 E-value=0.072 Score=42.26 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+++.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988654
No 496
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.48 E-value=0.13 Score=51.63 Aligned_cols=93 Identities=24% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCCCCcEEEEEecCCCChhHHHHHHHHHHHh-cCCeEEEEecCCCCChHHHHH------cCCCCC---------------
Q 021239 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA------MGIDAE--------------- 173 (315)
Q Consensus 116 Gl~~G~i~~i~G~~GsGKTtlal~la~~~~~-~g~~v~~i~~E~~~~~~~~~~------~g~~~~--------------- 173 (315)
++..|..++++||+|+|||+.+...+..... .+.+++|+..-.......++. +|+...
T Consensus 42 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~ 121 (715)
T 2va8_A 42 GLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKN 121 (715)
T ss_dssp TTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGG
T ss_pred HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCC
Confidence 4556889999999999999999877766554 688999988433222222222 232210
Q ss_pred -CeEEeCCCCHHHHHHHHHHHHH-cCCccEEeehhHhhhc
Q 021239 174 -NLLIAQPDSAENLLSVVDTLTK-SGSIDVIVVDSVAALI 211 (315)
Q Consensus 174 -~l~i~~~~~~e~~~~~i~~l~~-~~~~~lVVIDsl~~l~ 211 (315)
++.+. +.+.+...++.-.. -.++++||||....+.
T Consensus 122 ~~Iiv~---Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 122 YDIIIT---TYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp CSEEEE---CHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred CCEEEE---cHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 12221 44555554443211 2357899999998764
No 497
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.46 E-value=0.092 Score=49.17 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCCCCCcEEEEEecCCCChhHHHHHHHH
Q 021239 115 GGLPKGRIVEIYGREASGKTTLALHVIK 142 (315)
Q Consensus 115 GGl~~G~i~~i~G~~GsGKTtlal~la~ 142 (315)
|=++.|..+.|.|+||+|||||...++.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4778899999999999999999999887
No 498
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=92.42 E-value=0.046 Score=56.96 Aligned_cols=25 Identities=32% Similarity=0.601 Sum_probs=23.0
Q ss_pred CCCCcEEEEEecCCCChhHHHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALHVI 141 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~la 141 (315)
+++|+++.|.|++|+|||||+..++
T Consensus 665 I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 665 FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999998865
No 499
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=92.41 E-value=0.063 Score=55.66 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.8
Q ss_pred CCCCcEEEEEecCCCChhHHHHH
Q 021239 117 LPKGRIVEIYGREASGKTTLALH 139 (315)
Q Consensus 117 l~~G~i~~i~G~~GsGKTtlal~ 139 (315)
+++|+++.|.|++|+|||||+..
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl~~ 629 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLVME 629 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHHHH
T ss_pred EcCCcEEEEEccCCCChhhhHHH
Confidence 67899999999999999999753
No 500
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.39 E-value=0.077 Score=42.02 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 021239 122 IVEIYGREASGKTTLALHVIKE 143 (315)
Q Consensus 122 i~~i~G~~GsGKTtlal~la~~ 143 (315)
-+.+.|++|+|||+|+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999888753
Done!