BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021240
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 19/234 (8%)
Query: 28 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 87
++++ +V EE + DG+ +LI DG +S + W+ F +
Sbjct: 141 SVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRY 196
Query: 88 RGYSDFKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
GY ++ G P + F G+G + +P Y+FF + E D
Sbjct: 197 AGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDT 256
Query: 142 -SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGD 200
A+L ++ G + + A LD ++R++ + + + RG V + GD
Sbjct: 257 LRADLSRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGD 308
Query: 201 ALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 254
A H TPDIGQGGCAA+ED +VL + + E + + ++ ++ LK
Sbjct: 309 AGHSTTPDIGQGGCAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 362
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 19/234 (8%)
Query: 28 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 87
++++ +V EE + DG+ +LI DG +S + W+ F +
Sbjct: 141 SVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRY 196
Query: 88 RGYSDFKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
GY ++ G P + F G+G R P Y+FF + E D
Sbjct: 197 AGYVNWNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPLPAGLAEDRDT 256
Query: 142 -SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGD 200
A+L ++ G + + A LD ++R++ + + + RG V + GD
Sbjct: 257 LRADLSRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGD 308
Query: 201 ALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 254
A H TPDIGQGGCAA ED +VL + + E + + ++ ++ LK
Sbjct: 309 AGHSTTPDIGQGGCAAXEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 362
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 99/245 (40%), Gaps = 38/245 (15%)
Query: 10 CVRRKLLLETLAKELPSGTIRYSSQVVSIE--ESGHFKLLHLADGTILKTKVLIGCDGVN 67
+ R L E L K L + TI+++ V E E+G K+ ADG+ VL+G DG N
Sbjct: 108 SISRTELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIF-FADGSHENVDVLVGADGSN 165
Query: 68 SIVAK-WLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCD------- 119
S V K +L F VG S I G + + Q F G + +P
Sbjct: 166 SKVRKQYLPFIERFDVGVSXIIGRARL--TPALTALLPQNFRDGTPNSIVPKSPDWLFIS 223
Query: 120 -----------------DQTIYWFFTWTSSSQDKELEDHSAE-LKQFVLGKLHDLPAQVK 161
D I W + + S + D SAE L V + +
Sbjct: 224 XWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRXISWDPSLH 283
Query: 162 AVIEKTPLDSIISSRLQYRQ-PQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG 220
+++++ ++I S L R P + W + +V + GDA+H TP G G AL D
Sbjct: 284 TLVQQSDXENI--SPLHLRSXPHLLPWKS---STVTLLGDAIHNXTPXTGSGANTALRDA 338
Query: 221 IVLAR 225
++L +
Sbjct: 339 LLLTQ 343
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 29 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA-- 86
I +S+ V+ + G L L G +L+ +++G DGV S V +GFK +V +
Sbjct: 124 ISVNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 180
Query: 87 --IRGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
I + HG N + F+ + R + PC++ +Y + + D
Sbjct: 181 RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSV 238
Query: 142 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDA 201
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 239 PIDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKAETTKLDSWTRGKVALVGDA 289
Query: 202 LHPMTPDIGQGGCAALEDGIVLARCINE 229
H M P + QG A+ + L++ + E
Sbjct: 290 AHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 29 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA-- 86
I +S+ V+ + G L L G +L+ +++G DGV S V +GFK +V +
Sbjct: 124 ISVNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 180
Query: 87 --IRGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
I + HG N + F+ + R + PC++ +Y + + D
Sbjct: 181 RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSV 238
Query: 142 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDA 201
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 239 PIDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDA 289
Query: 202 LHPMTPDIGQGGCAALEDGIVLARCINE 229
H M P + QG A+ + L++ + E
Sbjct: 290 AHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 29 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA-- 86
I +S+ V+ + G L L G +L+ +++G DGV S V +GFK +V +
Sbjct: 160 ISVNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 216
Query: 87 --IRGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
I + HG N + F+ + R + PC++ +Y + + D
Sbjct: 217 RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSV 274
Query: 142 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDA 201
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 275 PIDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDA 325
Query: 202 LHPMTPDIGQGGCAALEDGIVLARCINE 229
H M P + QG A+ + L++ + E
Sbjct: 326 AHAMCPALAQGAGCAMVNAFSLSQDLEE 353
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 29 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA-- 86
I +S+ V+ + G L L G +L+ +++G DGV S V +GFK +V +
Sbjct: 124 ISVNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 180
Query: 87 --IRGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
I + HG N + F+ + R + PC++ +Y + + D
Sbjct: 181 RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSV 238
Query: 142 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDA 201
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 239 PIDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKFETTKLDSWTRGKVALVGDA 289
Query: 202 LHPMTPDIGQGGCAALEDGIVLARCINE 229
H M P + QG A+ + L++ + E
Sbjct: 290 AHAMCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 29 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI- 87
I +S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + +
Sbjct: 160 ISVNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 216
Query: 88 -----RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE 139
R + HG N + F+ + R + PC++ +Y + + D
Sbjct: 217 RLIVPRXKKEL--GHGEWDNTIDXWNFWPRVQRILYSPCNENELY--LGLXAPAADPRGS 272
Query: 140 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAG 199
+L+ +V P +IE L + +Y + + + +RG V + G
Sbjct: 273 SVPIDLEVWV----EXFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVG 323
Query: 200 DALHPMTPDIGQG-GCAAL 217
DA H P + QG GCA +
Sbjct: 324 DAAHAXCPALAQGAGCAXV 342
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 26/236 (11%)
Query: 27 GTIRYSSQVVSIEE------SGHFKLLHLADGTI-LKTKVLIGCDGVNSIVAKWLGFKNP 79
G IR+ ++++S + +G L DG L+ L+G DG S+V + LG
Sbjct: 135 GAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRY 194
Query: 80 AFVGRSAIRGY---SDFKGSHGFEPNFLQFF---GKGLRSGFIPCDDQTIYWFFTWTSSS 133
+ + G +D G EP ++ + F P D + F
Sbjct: 195 GHGTLTHMVGVIFDADLSGI--MEPGTTGWYYLHHPEFKGTFGPTDRPDRHTLFVEYDPD 252
Query: 134 QDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRG 193
+ + ED + + ++G D P +++ + +++R+ R W G
Sbjct: 253 EGERPEDFTPQRCVELIGLALDAPEVKPELVDIQGWE--MAARIAER------W---REG 301
Query: 194 SVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRV 249
V +AGDA P G G AA+ DG LA + L+ + G G D E ++V
Sbjct: 302 RVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGAGLLDTYEDERKV 357
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 30/219 (13%)
Query: 13 RKLLLETLAKELPSGTIRYSS-QVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 71
R+L+LE + E + + + V +E + L DG +L+ +V++G DG+ S V
Sbjct: 110 RRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVR 169
Query: 72 KWL--------GFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTI 123
+ L + +P VG A+ E N L +G + F P
Sbjct: 170 RRLLDIDVERRPYPSPMLVGTFAL-------APCVAERNRLYVDSQGGLAYFYPIGFDRA 222
Query: 124 YWFFTWTSSSQDKELEDHSAE-LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQP 182
++ + + D E L++ + + D A+ A + T SR +
Sbjct: 223 RLVVSFPREEARELMADTRGESLRRRLQRFVGDESAEAIAAVTGT-------SRFK---G 272
Query: 183 QEVLWGNISR---GSVCVAGDALHPMTPDIGQGGCAALE 218
+ + N+ R +V + GDA+H + P GQG A+E
Sbjct: 273 IPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIE 311
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 29 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA-- 86
I +S+ V+ + G L L G +L+ +++G DGV S V +GFK +V +
Sbjct: 124 ISVNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 180
Query: 87 --IRGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 141
I + HG N + F+ + R + PC++ +Y + + D
Sbjct: 181 RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSV 238
Query: 142 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDA 201
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 239 PIDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDA 289
Query: 202 LHPMTPDIGQGGCAALEDGIVLARCINE 229
H M P + QG A+ + L++ + E
Sbjct: 290 AHAMAPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207
F+L K D + K +I T +++R+ P E W + + + GDA H M P
Sbjct: 252 FLLKKFSDWDERYKELIHATLSFVGLATRIF---PLEKPWKSKRPLPITMIGDAAHLMPP 308
Query: 208 DIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDEEE 244
GQG + L D ++L+ I EA+K + G+E +EE
Sbjct: 309 FAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEE 357
>pdb|3GD5|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
Length = 323
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 44 FKLLHLADGTILKTKVLIGCD--GVNSIVAKWLGFK-NPAFVGRSAIRGYSDFKGSHGFE 100
KL ++ DG + +L+GC G++ VA GF +PA R+ S+ G G E
Sbjct: 158 LKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARA-----SEIAGRTGAE 212
Query: 101 PNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQF 148
LR F I + WTS Q+ E + +Q+
Sbjct: 213 VQI-------LRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQY 253
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207
F+L + D + K +I T +++R+ P E W + + + GDA H M P
Sbjct: 272 FLLKEFSDWDKRYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLPITMIGDAAHLMPP 328
Query: 208 DIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDEEE 244
GQG + L D ++L+ I EA+K + G+E +EE
Sbjct: 329 FAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEE 377
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207
F+L + D + K +I T +++R+ P E W + + + GDA H M P
Sbjct: 272 FLLKEFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLPITMIGDAAHLMPP 328
Query: 208 DIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDEEE 244
GQG + L D ++L+ I EA+K + G+E +EE
Sbjct: 329 FAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEE 377
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207
F+L + D + K +I T +++R+ P E W + + + GDA H M P
Sbjct: 272 FLLKEFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLPITMIGDAAHLMPP 328
Query: 208 DIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDEEE 244
GQG + L D ++L+ I EA+K + G+E +EE
Sbjct: 329 FAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEE 377
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 187 WGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFN 246
WG RG + + GDA H M P G A+ DGI LA + N
Sbjct: 300 WG---RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR----------------N 340
Query: 247 KRVEMGLKRYAKERRWRCFELI 268
V L+ Y + RR ++I
Sbjct: 341 ADVAAALREYEEARRPTANKII 362
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207
F+L K D + K +I T +++R+ P E W + + GDA H P
Sbjct: 252 FLLKKFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLPITXIGDAAHLXPP 308
Query: 208 DIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDEEE 244
GQG + L D ++L+ I EA+K + G+E +EE
Sbjct: 309 FAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGKEAQEE 357
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 107 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 154
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 155 KS--FRENMSDFLESGL 169
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 28 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 87
I V+ I ES H GT K + +G D P F GR+AI
Sbjct: 104 NIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAI 151
Query: 88 RGYSDFKGSHGFEPNFLQFFGKGL 111
YSD+ S F N F GL
Sbjct: 152 EIYSDYMKS--FRENMSDFLESGL 173
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 28 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 87
I V+ I ES H GT K + +G D P F GR+AI
Sbjct: 104 NIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAI 151
Query: 88 RGYSDFKGSHGFEPNFLQFFGKGL 111
YSD+ S F N F GL
Sbjct: 152 EIYSDYMKS--FRENMSDFLESGL 173
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 35 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 94
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 95 GSHGFEPNFLQFFGKGL 111
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 187 WGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFN 246
WG RG + + GDA H P G A+ DGI LA + N
Sbjct: 300 WG---RGRITLLGDAAHLXYPXGANGASQAILDGIELAAALAR----------------N 340
Query: 247 KRVEMGLKRYAKERRWRCFELI 268
V L+ Y + RR ++I
Sbjct: 341 ADVAAALREYEEARRPTANKII 362
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 55 LKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIR 88
L T+ ++GCDG S V K GF F G SA R
Sbjct: 153 LTTRYVVGCDGGRSTVRKAAGFD---FPGTSASR 183
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 200 DALHPMTPDIGQGGCAALEDGIV--LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYA 257
D P+T + Q L G R N+ +K + G +D + K VE
Sbjct: 89 DEAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEV 148
Query: 258 KERR---W-RCFELISIAYLVGSIQQSDGKI 284
E W RC EL I ++G I++ +GKI
Sbjct: 149 IEYNAVFWERCTELQDIERIMGQIERGEGKI 179
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 148 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 207
F+L + D + K +I T +++R+ P E W + + GDA H P
Sbjct: 273 FLLKEFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLPITXIGDAAHLXPP 329
Query: 208 DIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDEEE 244
GQG + L D ++L+ I EA+K + G+E +EE
Sbjct: 330 FAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGKEAQEE 378
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 27 GTIRYSSQ--VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGR 84
G RY + +V + + + +DGT + +IG DG S+V K L P + G
Sbjct: 110 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGY 169
Query: 85 SAIRG 89
RG
Sbjct: 170 VTWRG 174
>pdb|2FQW|A Chain A, Pnra From Treponema Pallidum As Purified From E. Coli
(Bound To Inosine)
pdb|2FQX|A Chain A, Pnra From Treponema Pallidum Complexed With Guanosine
pdb|2FQY|A Chain A, Pnra From Treponema Pallidum Complexed With Adenosine
Length = 318
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 238 GEEDEEEFNKRVEMGLKRYAKERRWRC 264
G+ D++ FN++V G+ R+A+E +C
Sbjct: 14 GDIDDKSFNQQVWEGISRFAQENNAKC 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,600,216
Number of Sequences: 62578
Number of extensions: 401225
Number of successful extensions: 937
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 49
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)