Query 021241
Match_columns 315
No_of_seqs 222 out of 1531
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 2.1E-69 4.6E-74 476.3 28.3 264 4-289 2-266 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 1.5E-67 3.2E-72 464.6 28.8 284 1-288 1-286 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.4E-60 1.2E-64 424.1 28.7 250 15-287 2-252 (267)
4 COG0667 Tas Predicted oxidored 100.0 7.6E-60 1.6E-64 430.7 27.8 262 5-287 1-309 (316)
5 KOG1575 Voltage-gated shaker-l 100.0 4.2E-59 9E-64 418.3 26.3 274 4-296 11-334 (336)
6 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.5E-58 3.2E-63 416.2 28.6 259 5-287 4-262 (275)
7 TIGR01293 Kv_beta voltage-depe 100.0 1.8E-57 3.8E-62 417.6 26.9 260 7-285 1-316 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 5.7E-57 1.2E-61 418.5 28.4 267 3-287 11-333 (346)
9 PRK10625 tas putative aldo-ket 100.0 7.6E-57 1.6E-61 418.1 27.1 277 5-287 1-339 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1E-54 2.2E-59 393.8 27.7 260 7-285 1-285 (285)
11 PRK10376 putative oxidoreducta 100.0 1.5E-54 3.3E-59 393.2 25.7 261 1-287 1-288 (290)
12 PLN02587 L-galactose dehydroge 100.0 1.7E-54 3.7E-59 397.3 26.3 265 7-287 1-300 (314)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.3E-53 7.2E-58 383.5 21.3 250 18-286 1-282 (283)
14 COG4989 Predicted oxidoreducta 100.0 3.8E-52 8.1E-57 352.3 18.5 264 5-287 1-293 (298)
15 PRK14863 bifunctional regulato 100.0 1.8E-51 4E-56 372.7 20.2 249 13-285 2-280 (292)
16 COG1453 Predicted oxidoreducta 100.0 1.3E-48 2.8E-53 348.0 18.6 275 5-302 1-307 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4.1E-44 8.9E-49 305.6 19.5 257 4-277 21-311 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 2.4E-07 5.3E-12 79.1 7.4 138 72-209 73-229 (285)
19 PF07021 MetW: Methionine bios 91.5 2 4.3E-05 36.4 9.3 105 92-212 60-171 (193)
20 COG1748 LYS9 Saccharopine dehy 82.7 7.5 0.00016 36.8 8.5 80 28-119 78-159 (389)
21 PRK10558 alpha-dehydro-beta-de 81.8 19 0.00041 32.0 10.4 101 143-272 10-115 (256)
22 PRK08609 hypothetical protein; 81.1 63 0.0014 32.4 16.6 184 29-241 349-553 (570)
23 PRK13796 GTPase YqeH; Provisio 78.5 34 0.00074 32.1 11.5 120 26-168 54-179 (365)
24 PRK10128 2-keto-3-deoxy-L-rham 77.6 35 0.00075 30.6 10.7 102 143-272 9-114 (267)
25 PRK08392 hypothetical protein; 76.1 49 0.0011 28.3 17.3 180 30-241 15-209 (215)
26 PF03102 NeuB: NeuB family; I 75.5 11 0.00024 33.2 6.9 118 26-171 53-191 (241)
27 TIGR03239 GarL 2-dehydro-3-deo 75.1 34 0.00074 30.3 10.0 100 145-272 5-108 (249)
28 TIGR00381 cdhD CO dehydrogenas 74.7 49 0.0011 31.2 11.0 97 101-211 150-251 (389)
29 COG1140 NarY Nitrate reductase 73.3 2.6 5.7E-05 39.1 2.4 57 145-202 259-317 (513)
30 PRK04452 acetyl-CoA decarbonyl 73.0 23 0.00051 32.6 8.5 96 98-209 83-184 (319)
31 cd01973 Nitrogenase_VFe_beta_l 72.4 98 0.0021 30.0 13.4 111 50-176 66-191 (454)
32 cd03174 DRE_TIM_metallolyase D 71.8 25 0.00054 30.9 8.4 99 92-207 20-135 (265)
33 cd07944 DRE_TIM_HOA_like 4-hyd 70.5 49 0.0011 29.5 10.0 104 91-206 20-128 (266)
34 COG2089 SpsE Sialic acid synth 70.5 59 0.0013 30.0 10.2 117 26-171 87-225 (347)
35 cd03319 L-Ala-DL-Glu_epimerase 70.2 87 0.0019 28.5 13.6 149 27-209 134-288 (316)
36 KOG0259 Tyrosine aminotransfer 68.5 1.1E+02 0.0024 29.0 12.3 67 29-111 81-154 (447)
37 COG1751 Uncharacterized conser 68.4 59 0.0013 26.5 8.7 102 135-250 11-123 (186)
38 PRK14461 ribosomal RNA large s 68.1 40 0.00086 31.7 9.0 98 111-211 232-352 (371)
39 cd03316 MR_like Mandelate race 66.9 1.1E+02 0.0023 28.4 14.6 149 27-208 139-299 (357)
40 PRK13361 molybdenum cofactor b 66.5 92 0.002 28.6 11.2 126 26-171 45-178 (329)
41 cd01965 Nitrogenase_MoFe_beta_ 64.7 1.3E+02 0.0029 28.7 14.2 114 51-177 62-186 (428)
42 PRK05692 hydroxymethylglutaryl 64.4 36 0.00077 30.8 7.8 96 92-205 27-138 (287)
43 KOG1549 Cysteine desulfurase N 62.3 55 0.0012 31.4 8.8 68 138-205 143-216 (428)
44 PRK13958 N-(5'-phosphoribosyl) 61.4 28 0.0006 29.9 6.3 67 99-183 16-83 (207)
45 PLN02489 homocysteine S-methyl 61.2 1.4E+02 0.003 27.7 19.3 170 74-271 131-332 (335)
46 TIGR02311 HpaI 2,4-dihydroxyhe 60.6 1.1E+02 0.0024 27.0 10.1 101 143-272 3-108 (249)
47 PLN02746 hydroxymethylglutaryl 59.7 48 0.001 31.0 7.9 97 91-205 68-180 (347)
48 TIGR00216 ispH_lytB (E)-4-hydr 58.9 70 0.0015 28.9 8.6 116 141-267 145-273 (280)
49 PRK01045 ispH 4-hydroxy-3-meth 58.1 75 0.0016 29.0 8.7 116 141-267 145-275 (298)
50 PRK08195 4-hyroxy-2-oxovalerat 57.7 1.6E+02 0.0035 27.3 11.7 36 9-49 10-45 (337)
51 PRK07535 methyltetrahydrofolat 57.7 62 0.0013 28.9 8.0 89 102-208 36-124 (261)
52 PRK07945 hypothetical protein; 56.8 1.7E+02 0.0036 27.2 17.8 107 28-156 110-226 (335)
53 COG1149 MinD superfamily P-loo 56.6 1.5E+02 0.0032 26.8 9.9 90 99-211 155-250 (284)
54 PF06506 PrpR_N: Propionate ca 56.0 21 0.00046 29.6 4.5 69 134-205 61-130 (176)
55 TIGR02026 BchE magnesium-proto 55.7 1E+02 0.0022 30.2 9.9 124 134-268 222-360 (497)
56 COG0761 lytB 4-Hydroxy-3-methy 55.4 81 0.0017 28.5 8.2 121 136-267 142-277 (294)
57 PRK12360 4-hydroxy-3-methylbut 55.2 99 0.0021 28.0 8.9 107 150-267 157-274 (281)
58 PRK00164 moaA molybdenum cofac 54.1 1.8E+02 0.0038 26.6 14.8 161 26-205 49-228 (331)
59 cd03322 rpsA The starvation se 53.3 46 0.00099 31.1 6.8 69 139-209 202-274 (361)
60 PF01487 DHquinase_I: Type I 3 52.8 1.5E+02 0.0032 25.4 10.6 123 24-169 70-192 (224)
61 PRK14464 ribosomal RNA large s 52.6 1E+02 0.0022 28.8 8.8 78 134-211 223-317 (344)
62 PF11242 DUF2774: Protein of u 51.5 22 0.00048 24.1 3.1 23 226-248 15-37 (63)
63 PRK07094 biotin synthase; Prov 51.5 1.6E+02 0.0035 26.8 10.1 120 134-268 70-202 (323)
64 TIGR01228 hutU urocanate hydra 51.4 57 0.0012 31.8 7.0 127 33-183 107-258 (545)
65 TIGR00737 nifR3_yhdG putative 51.2 2E+02 0.0042 26.3 13.2 135 25-182 71-222 (319)
66 PRK05414 urocanate hydratase; 51.1 59 0.0013 31.8 7.0 126 34-183 117-267 (556)
67 cd00308 enolase_like Enolase-s 50.8 1.1E+02 0.0024 26.3 8.4 69 140-210 134-206 (229)
68 TIGR03700 mena_SCO4494 putativ 50.8 1.9E+02 0.0041 26.9 10.5 135 88-265 80-221 (351)
69 KOG0369 Pyruvate carboxylase [ 50.6 1.9E+02 0.0042 29.6 10.5 146 29-213 43-197 (1176)
70 cd07943 DRE_TIM_HOA 4-hydroxy- 50.4 1.8E+02 0.0039 25.7 15.2 165 9-210 7-197 (263)
71 TIGR02932 vnfK_nitrog V-contai 49.1 2.6E+02 0.0056 27.1 13.6 115 50-177 69-196 (457)
72 PRK10415 tRNA-dihydrouridine s 48.1 2.2E+02 0.0048 26.1 11.9 134 26-182 74-224 (321)
73 COG3623 SgaU Putative L-xylulo 48.0 28 0.00061 30.5 4.0 70 11-82 65-155 (287)
74 PRK05283 deoxyribose-phosphate 48.0 85 0.0018 28.0 7.2 84 19-109 136-227 (257)
75 PRK14462 ribosomal RNA large s 47.4 1.7E+02 0.0036 27.5 9.4 142 54-211 175-338 (356)
76 PRK09613 thiH thiamine biosynt 47.0 43 0.00094 32.6 5.7 107 88-210 116-242 (469)
77 PRK00912 ribonuclease P protei 46.8 1.9E+02 0.0042 25.0 10.6 170 28-241 15-202 (237)
78 PRK14459 ribosomal RNA large s 46.4 1.6E+02 0.0036 27.7 9.3 99 110-211 241-359 (373)
79 PRK15072 bifunctional D-altron 46.4 64 0.0014 30.7 6.7 68 140-209 246-317 (404)
80 PRK06361 hypothetical protein; 45.7 1.9E+02 0.004 24.5 13.6 184 29-245 10-200 (212)
81 KOG2367 Alpha-isopropylmalate 45.6 1.4E+02 0.0031 29.1 8.6 88 26-118 201-290 (560)
82 TIGR02090 LEU1_arch isopropylm 45.2 2.6E+02 0.0057 26.1 10.7 51 9-65 7-57 (363)
83 PRK10550 tRNA-dihydrouridine s 44.8 2.5E+02 0.0054 25.7 13.4 139 24-182 70-224 (312)
84 PRK07534 methionine synthase I 44.1 2.7E+02 0.0058 25.9 22.7 214 24-271 39-294 (336)
85 KOG1576 Predicted oxidoreducta 44.0 1.3E+02 0.0027 27.3 7.5 147 16-203 104-270 (342)
86 PF02401 LYTB: LytB protein; 43.9 39 0.00086 30.5 4.6 107 150-267 155-274 (281)
87 PLN02363 phosphoribosylanthran 43.9 77 0.0017 28.2 6.4 66 101-183 64-130 (256)
88 COG0635 HemN Coproporphyrinoge 43.9 1.4E+02 0.0031 28.6 8.6 73 86-162 200-276 (416)
89 cd07948 DRE_TIM_HCS Saccharomy 43.8 2.4E+02 0.0051 25.1 10.5 136 9-171 7-149 (262)
90 PRK14466 ribosomal RNA large s 43.8 2E+02 0.0043 26.9 9.2 99 110-211 210-325 (345)
91 PRK00730 rnpA ribonuclease P; 43.5 95 0.0021 24.9 6.2 63 72-149 46-110 (138)
92 PRK01222 N-(5'-phosphoribosyl) 43.5 72 0.0016 27.4 6.0 67 100-184 19-86 (210)
93 cd02801 DUS_like_FMN Dihydrour 43.3 2.1E+02 0.0045 24.4 9.7 125 27-172 65-205 (231)
94 PRK04390 rnpA ribonuclease P; 42.8 1.1E+02 0.0023 23.7 6.4 65 72-149 44-110 (120)
95 PRK11858 aksA trans-homoaconit 42.7 2.9E+02 0.0064 26.0 15.0 68 31-103 118-187 (378)
96 TIGR02660 nifV_homocitr homoci 42.6 1.7E+02 0.0037 27.4 8.9 94 92-209 24-134 (365)
97 COG0773 MurC UDP-N-acetylmuram 42.4 11 0.00024 36.4 0.8 59 190-256 80-141 (459)
98 TIGR00048 radical SAM enzyme, 42.3 1.6E+02 0.0034 27.6 8.5 98 111-211 219-333 (355)
99 PRK13803 bifunctional phosphor 42.3 1.7E+02 0.0037 29.6 9.3 69 101-185 20-89 (610)
100 TIGR00126 deoC deoxyribose-pho 42.2 67 0.0015 27.7 5.6 79 21-107 124-205 (211)
101 cd07943 DRE_TIM_HOA 4-hydroxy- 42.1 1.8E+02 0.0038 25.8 8.5 104 91-206 22-131 (263)
102 PRK14463 ribosomal RNA large s 42.1 1.7E+02 0.0036 27.4 8.6 98 111-211 211-325 (349)
103 cd03315 MLE_like Muconate lact 42.0 2.4E+02 0.0053 24.8 13.1 151 27-210 85-241 (265)
104 PRK14017 galactonate dehydrata 41.8 71 0.0015 30.1 6.2 68 140-209 217-288 (382)
105 PRK15408 autoinducer 2-binding 41.4 2.6E+02 0.0057 25.6 9.9 77 72-169 22-98 (336)
106 cd07948 DRE_TIM_HCS Saccharomy 41.3 2.3E+02 0.0049 25.3 9.0 95 92-207 23-132 (262)
107 PRK14456 ribosomal RNA large s 41.3 1.9E+02 0.0042 27.2 8.9 99 111-211 238-353 (368)
108 TIGR01278 DPOR_BchB light-inde 41.2 1.7E+02 0.0038 28.8 9.0 142 52-210 67-243 (511)
109 COG1168 MalY Bifunctional PLP- 41.1 3.2E+02 0.0069 25.9 11.8 75 28-118 40-117 (388)
110 TIGR02370 pyl_corrinoid methyl 41.0 1.8E+02 0.0039 24.6 8.0 148 26-201 9-164 (197)
111 PRK14457 ribosomal RNA large s 40.8 3.1E+02 0.0066 25.6 14.3 150 54-211 163-330 (345)
112 PRK03031 rnpA ribonuclease P; 40.7 1.1E+02 0.0023 23.8 6.1 65 72-149 47-114 (122)
113 TIGR03597 GTPase_YqeH ribosome 40.6 2.1E+02 0.0045 26.7 9.1 119 27-168 49-173 (360)
114 COG4626 Phage terminase-like p 40.1 1E+02 0.0022 30.5 7.0 76 134-209 410-485 (546)
115 cd03325 D-galactonate_dehydrat 39.8 1.1E+02 0.0024 28.4 7.2 66 140-207 216-285 (352)
116 TIGR00742 yjbN tRNA dihydrouri 39.6 3.1E+02 0.0066 25.2 11.8 134 25-170 63-215 (318)
117 PRK13352 thiamine biosynthesis 39.6 3.5E+02 0.0076 25.9 11.7 135 27-205 75-224 (431)
118 PRK14465 ribosomal RNA large s 39.3 2.8E+02 0.0061 25.8 9.5 98 111-211 216-329 (342)
119 PRK00499 rnpA ribonuclease P; 39.2 1.2E+02 0.0026 23.1 6.1 64 72-149 38-104 (114)
120 PRK09061 D-glutamate deacylase 39.0 3.2E+02 0.007 26.9 10.5 112 31-161 171-286 (509)
121 PRK09413 IS2 repressor TnpA; R 38.7 46 0.00099 25.8 3.7 40 26-65 13-53 (121)
122 COG0135 TrpF Phosphoribosylant 38.5 2.2E+02 0.0047 24.5 8.1 83 100-206 18-104 (208)
123 PF00682 HMGL-like: HMGL-like 38.2 2.6E+02 0.0056 24.0 10.6 168 26-210 11-193 (237)
124 KOG1579 Homocysteine S-methylt 38.1 3.2E+02 0.007 25.1 14.1 220 28-271 52-313 (317)
125 cd03318 MLE Muconate Lactonizi 37.7 67 0.0015 29.9 5.3 65 140-206 228-296 (365)
126 TIGR01210 conserved hypothetic 37.6 3.2E+02 0.007 24.9 14.8 153 28-211 87-256 (313)
127 COG2069 CdhD CO dehydrogenase/ 37.6 3.3E+02 0.007 25.0 11.0 102 96-210 156-261 (403)
128 COG0042 tRNA-dihydrouridine sy 37.6 3.3E+02 0.0072 25.1 12.4 130 25-173 75-221 (323)
129 PRK00087 4-hydroxy-3-methylbut 37.5 1.6E+02 0.0034 30.1 8.3 113 143-266 147-270 (647)
130 cd02930 DCR_FMN 2,4-dienoyl-Co 37.5 3.4E+02 0.0074 25.2 11.9 91 73-173 202-299 (353)
131 PRK09058 coproporphyrinogen II 37.3 3.8E+02 0.0082 25.9 10.6 29 85-114 225-253 (449)
132 cd00740 MeTr MeTr subgroup of 37.2 3E+02 0.0064 24.4 9.4 104 87-209 23-128 (252)
133 PRK14460 ribosomal RNA large s 37.0 2.6E+02 0.0057 26.1 9.1 144 54-211 170-332 (354)
134 PF00682 HMGL-like: HMGL-like 36.9 1.4E+02 0.0029 25.8 6.9 141 91-271 14-176 (237)
135 cd03327 MR_like_2 Mandelate ra 36.8 77 0.0017 29.3 5.5 65 140-206 211-279 (341)
136 cd00405 PRAI Phosphoribosylant 36.7 2.6E+02 0.0056 23.5 10.2 40 107-164 73-112 (203)
137 TIGR01862 N2-ase-Ialpha nitrog 36.4 3.4E+02 0.0074 26.1 10.1 144 51-209 98-271 (443)
138 cd01971 Nitrogenase_VnfN_like 36.4 3.4E+02 0.0073 26.0 10.0 111 51-178 67-191 (427)
139 cd01967 Nitrogenase_MoFe_alpha 36.3 3.7E+02 0.0081 25.3 11.3 110 51-175 68-188 (406)
140 TIGR00190 thiC thiamine biosyn 36.0 4E+02 0.0086 25.5 13.5 134 27-204 75-220 (423)
141 PF01175 Urocanase: Urocanase; 35.9 94 0.002 30.5 5.9 127 33-183 106-257 (546)
142 TIGR01163 rpe ribulose-phospha 35.9 2.1E+02 0.0045 23.9 7.7 95 91-204 12-108 (210)
143 PF01207 Dus: Dihydrouridine s 35.7 1.4E+02 0.0031 27.2 7.0 126 25-171 62-204 (309)
144 TIGR02329 propionate_PrpR prop 35.2 2.5E+02 0.0054 27.9 9.0 69 134-205 81-150 (526)
145 TIGR01182 eda Entner-Doudoroff 34.7 1.4E+02 0.003 25.6 6.3 82 95-205 24-106 (204)
146 COG0820 Predicted Fe-S-cluster 34.7 2.6E+02 0.0055 26.2 8.3 97 111-211 216-330 (349)
147 cd01981 Pchlide_reductase_B Pc 34.5 4.2E+02 0.009 25.3 12.1 139 53-210 68-247 (430)
148 TIGR02534 mucon_cyclo muconate 34.4 81 0.0018 29.5 5.3 68 140-209 227-298 (368)
149 TIGR00735 hisF imidazoleglycer 34.3 3.2E+02 0.007 24.0 11.1 64 140-203 188-253 (254)
150 cd01966 Nitrogenase_NifN_1 Nit 34.0 3.4E+02 0.0074 25.9 9.6 113 51-176 62-187 (417)
151 TIGR01428 HAD_type_II 2-haloal 33.6 1.3E+02 0.0028 24.9 6.0 37 136-173 94-130 (198)
152 PRK01492 rnpA ribonuclease P; 33.4 1.7E+02 0.0037 22.6 6.1 62 73-147 47-114 (118)
153 PLN02520 bifunctional 3-dehydr 33.2 2.8E+02 0.0061 27.5 9.1 26 24-49 92-117 (529)
154 PF06080 DUF938: Protein of un 33.2 50 0.0011 28.3 3.3 43 176-218 107-152 (204)
155 TIGR01928 menC_lowGC/arch o-su 32.5 1.2E+02 0.0026 27.8 6.1 70 138-209 210-283 (324)
156 COG2200 Rtn c-di-GMP phosphodi 32.5 2E+02 0.0043 25.4 7.3 131 55-207 69-213 (256)
157 CHL00076 chlB photochlorophyll 32.5 4E+02 0.0088 26.3 10.0 147 52-210 67-248 (513)
158 PRK13505 formate--tetrahydrofo 32.2 3.4E+02 0.0073 27.1 9.1 117 170-305 369-495 (557)
159 COG0159 TrpA Tryptophan syntha 32.1 3.8E+02 0.0081 24.1 15.3 26 27-52 29-54 (265)
160 PRK01313 rnpA ribonuclease P; 32.1 1.7E+02 0.0037 23.1 5.9 63 72-148 47-113 (129)
161 COG2861 Uncharacterized protei 32.0 3.6E+02 0.0078 23.8 9.8 53 109-162 78-130 (250)
162 PF01118 Semialdhyde_dh: Semia 31.8 63 0.0014 24.7 3.5 28 26-53 74-101 (121)
163 PRK04820 rnpA ribonuclease P; 31.7 1.9E+02 0.0042 23.3 6.3 65 72-149 48-114 (145)
164 cd01320 ADA Adenosine deaminas 31.7 3.9E+02 0.0085 24.2 15.7 71 135-209 171-242 (325)
165 PF13407 Peripla_BP_4: Peripla 31.7 2.5E+02 0.0053 24.0 7.7 53 90-162 14-66 (257)
166 PF01081 Aldolase: KDPG and KH 31.4 1.2E+02 0.0027 25.8 5.4 102 135-268 18-119 (196)
167 TIGR02931 anfK_nitrog Fe-only 31.2 5E+02 0.011 25.2 10.7 114 51-177 73-199 (461)
168 COG1751 Uncharacterized conser 31.1 1.4E+02 0.0031 24.4 5.3 68 31-106 16-85 (186)
169 PF00809 Pterin_bind: Pterin b 31.1 2.5E+02 0.0054 23.9 7.4 67 137-209 57-125 (210)
170 cd00959 DeoC 2-deoxyribose-5-p 31.0 1E+02 0.0022 26.1 5.0 77 21-105 123-202 (203)
171 cd01821 Rhamnogalacturan_acety 31.0 3E+02 0.0065 22.6 8.1 96 143-238 27-149 (198)
172 COG2987 HutU Urocanate hydrata 30.9 98 0.0021 29.9 5.0 103 57-183 152-267 (561)
173 PF02679 ComA: (2R)-phospho-3- 30.9 3E+02 0.0065 24.3 7.9 78 28-115 83-168 (244)
174 PF09370 TIM-br_sig_trns: TIM- 30.8 90 0.0019 27.9 4.6 60 135-207 93-157 (268)
175 PF14871 GHL6: Hypothetical gl 30.6 51 0.0011 26.1 2.8 21 190-210 47-67 (132)
176 PRK14470 ribosomal RNA large s 30.0 3.6E+02 0.0078 25.0 8.7 78 134-211 228-322 (336)
177 PRK12331 oxaloacetate decarbox 29.9 3.9E+02 0.0085 25.9 9.2 100 94-205 29-141 (448)
178 TIGR01502 B_methylAsp_ase meth 29.9 2.9E+02 0.0062 26.5 8.2 70 138-209 279-357 (408)
179 cd03770 SR_TndX_transposase Se 29.9 94 0.002 24.5 4.3 52 93-157 54-105 (140)
180 cd03323 D-glucarate_dehydratas 29.9 2.3E+02 0.0051 26.8 7.6 69 139-209 249-321 (395)
181 PRK08776 cystathionine gamma-s 29.7 4.3E+02 0.0094 25.0 9.5 73 137-210 110-185 (405)
182 cd01948 EAL EAL domain. This d 29.6 3.4E+02 0.0074 22.8 8.8 116 74-207 82-209 (240)
183 PF07725 LRR_3: Leucine Rich R 29.6 21 0.00045 18.5 0.3 14 301-314 6-19 (20)
184 COG0282 ackA Acetate kinase [E 29.5 5E+02 0.011 24.7 9.6 120 144-268 164-290 (396)
185 PRK09490 metH B12-dependent me 29.3 7E+02 0.015 27.8 11.7 100 93-209 384-489 (1229)
186 TIGR01579 MiaB-like-C MiaB-lik 29.1 3.2E+02 0.007 25.9 8.5 68 132-200 165-245 (414)
187 COG1880 CdhB CO dehydrogenase/ 29.0 3.3E+02 0.0071 22.4 7.2 113 18-148 39-169 (170)
188 KOG0077 Vesicle coat complex C 28.7 2.3E+02 0.005 23.7 6.2 36 136-171 7-42 (193)
189 cd03466 Nitrogenase_NifN_2 Nit 28.4 5.3E+02 0.011 24.7 9.9 113 51-176 65-184 (429)
190 cd07945 DRE_TIM_CMS Leptospira 28.2 4.4E+02 0.0096 23.6 15.4 50 9-65 4-55 (280)
191 PRK06015 keto-hydroxyglutarate 27.9 1.9E+02 0.0041 24.7 6.0 60 139-205 42-102 (201)
192 cd04740 DHOD_1B_like Dihydroor 27.4 4.5E+02 0.0098 23.5 14.8 139 27-182 100-260 (296)
193 COG2102 Predicted ATPases of P 27.2 1.1E+02 0.0023 26.7 4.3 99 134-239 73-177 (223)
194 PRK14469 ribosomal RNA large s 27.1 5.1E+02 0.011 24.0 10.9 97 111-210 212-324 (343)
195 PRK14332 (dimethylallyl)adenos 27.1 4.9E+02 0.011 25.2 9.4 124 132-268 181-325 (449)
196 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.1 3.8E+02 0.0082 23.9 8.2 114 93-233 23-157 (275)
197 TIGR00289 conserved hypothetic 26.9 2.8E+02 0.0061 24.1 7.0 84 190-287 75-168 (222)
198 PRK05588 histidinol-phosphatas 26.8 4.3E+02 0.0093 23.1 11.7 80 29-117 16-103 (255)
199 TIGR03551 F420_cofH 7,8-dideme 26.8 3.8E+02 0.0083 24.7 8.4 123 134-268 70-215 (343)
200 PRK09058 coproporphyrinogen II 26.8 5.8E+02 0.013 24.6 14.0 120 89-209 42-182 (449)
201 cd07939 DRE_TIM_NifV Streptomy 26.7 4.4E+02 0.0095 23.1 11.1 92 91-205 20-128 (259)
202 PRK14468 ribosomal RNA large s 26.6 4.2E+02 0.0092 24.6 8.6 99 110-211 206-321 (343)
203 cd08319 Death_RAIDD Death doma 26.6 78 0.0017 22.9 2.9 67 94-181 14-81 (83)
204 cd01974 Nitrogenase_MoFe_beta 26.5 5.8E+02 0.013 24.4 14.1 114 50-176 65-190 (435)
205 PLN03228 methylthioalkylmalate 26.3 4.6E+02 0.01 25.9 9.1 99 91-209 106-231 (503)
206 TIGR01496 DHPS dihydropteroate 26.2 4.6E+02 0.01 23.2 9.8 63 139-208 63-126 (257)
207 PRK14455 ribosomal RNA large s 26.2 4.4E+02 0.0094 24.7 8.6 78 134-211 243-337 (356)
208 PF01408 GFO_IDH_MocA: Oxidore 26.0 2.8E+02 0.006 20.6 8.4 87 141-236 14-114 (120)
209 cd03314 MAL Methylaspartate am 25.9 5.6E+02 0.012 24.1 9.3 69 139-209 244-321 (369)
210 cd04734 OYE_like_3_FMN Old yel 25.8 5.4E+02 0.012 23.8 10.9 35 140-174 274-309 (343)
211 PRK08195 4-hyroxy-2-oxovalerat 25.8 5.4E+02 0.012 23.8 9.3 110 87-209 22-137 (337)
212 PRK01732 rnpA ribonuclease P; 25.6 2.7E+02 0.0058 21.3 6.0 65 72-149 45-111 (114)
213 COG1831 Predicted metal-depend 25.6 2.9E+02 0.0063 24.9 6.7 66 136-201 106-185 (285)
214 PF00356 LacI: Bacterial regul 25.6 67 0.0015 20.3 2.1 40 227-270 2-41 (46)
215 TIGR00035 asp_race aspartate r 25.1 3.2E+02 0.007 23.5 7.2 78 90-170 17-95 (229)
216 cd02070 corrinoid_protein_B12- 25.1 4.2E+02 0.009 22.3 9.7 59 144-205 104-170 (201)
217 cd07940 DRE_TIM_IPMS 2-isoprop 25.1 4.8E+02 0.01 23.0 11.8 39 9-52 5-43 (268)
218 PRK09427 bifunctional indole-3 25.0 2E+02 0.0044 27.9 6.3 64 100-184 273-338 (454)
219 PF01081 Aldolase: KDPG and KH 25.0 1.7E+02 0.0037 24.9 5.1 58 141-205 48-106 (196)
220 COG1151 6Fe-6S prismane cluste 25.0 1.9E+02 0.0041 28.8 6.0 54 90-157 360-413 (576)
221 TIGR02090 LEU1_arch isopropylm 25.0 4.9E+02 0.011 24.3 8.8 90 92-204 23-129 (363)
222 COG1131 CcmA ABC-type multidru 24.9 2.2E+02 0.0047 25.7 6.2 66 91-170 140-205 (293)
223 COG0159 TrpA Tryptophan syntha 24.9 5.1E+02 0.011 23.2 10.6 140 134-284 76-242 (265)
224 TIGR02026 BchE magnesium-proto 24.8 6.6E+02 0.014 24.6 10.5 102 88-209 223-345 (497)
225 COG0809 QueA S-adenosylmethion 24.6 77 0.0017 29.3 3.1 68 137-209 186-258 (348)
226 PF00388 PI-PLC-X: Phosphatidy 24.5 49 0.0011 26.3 1.8 16 33-48 30-45 (146)
227 PRK00396 rnpA ribonuclease P; 24.4 2.5E+02 0.0053 22.2 5.6 65 72-149 46-112 (130)
228 PRK14041 oxaloacetate decarbox 24.4 5.1E+02 0.011 25.3 8.9 17 94-110 28-44 (467)
229 PRK06015 keto-hydroxyglutarate 24.2 4.5E+02 0.0098 22.4 9.2 99 134-249 13-118 (201)
230 COG5310 Homospermidine synthas 24.1 6E+02 0.013 23.8 8.8 74 33-119 51-125 (481)
231 TIGR03822 AblA_like_2 lysine-2 24.1 5.6E+02 0.012 23.4 11.8 75 136-212 152-239 (321)
232 PF13518 HTH_28: Helix-turn-he 24.1 97 0.0021 19.3 2.8 22 226-248 14-35 (52)
233 PLN02389 biotin synthase 24.1 6.2E+02 0.013 23.9 12.3 105 26-151 116-227 (379)
234 cd00885 cinA Competence-damage 23.9 3.5E+02 0.0077 22.2 6.8 61 34-100 23-84 (170)
235 PF04748 Polysacc_deac_2: Dive 23.9 4E+02 0.0086 22.9 7.3 84 26-114 71-182 (213)
236 PF07287 DUF1446: Protein of u 23.8 2.3E+02 0.0049 26.7 6.2 89 138-237 10-100 (362)
237 cd01968 Nitrogenase_NifE_I Nit 23.7 6.3E+02 0.014 23.9 10.2 111 50-176 66-187 (410)
238 TIGR03569 NeuB_NnaB N-acetylne 23.7 5.9E+02 0.013 23.6 10.3 116 26-168 73-210 (329)
239 PRK14476 nitrogenase molybdenu 23.5 5.3E+02 0.012 25.0 9.0 113 51-176 73-198 (455)
240 PF02574 S-methyl_trans: Homoc 23.3 4E+02 0.0087 24.0 7.7 218 27-270 39-303 (305)
241 COG2949 SanA Uncharacterized m 23.3 4.9E+02 0.011 22.5 8.4 110 80-209 66-182 (235)
242 COG3454 Metal-dependent hydrol 23.3 1.1E+02 0.0023 28.4 3.7 73 134-207 139-230 (377)
243 COG3215 PilZ Tfp pilus assembl 23.3 1.7E+02 0.0038 22.1 4.2 65 31-102 22-106 (117)
244 PF06819 Arc_PepC: Archaeal Pe 23.3 2.1E+02 0.0047 21.9 4.8 72 66-153 34-105 (110)
245 COG2896 MoaA Molybdenum cofact 23.1 6E+02 0.013 23.5 10.2 128 27-172 44-176 (322)
246 PRK14340 (dimethylallyl)adenos 23.0 6.9E+02 0.015 24.1 9.6 66 132-199 176-254 (445)
247 COG2159 Predicted metal-depend 22.9 5.7E+02 0.012 23.1 10.0 96 100-210 55-167 (293)
248 PRK15440 L-rhamnonate dehydrat 22.9 2.6E+02 0.0057 26.5 6.6 66 139-206 247-318 (394)
249 PRK11815 tRNA-dihydrouridine s 22.9 6E+02 0.013 23.4 10.0 133 26-170 74-225 (333)
250 PF10171 DUF2366: Uncharacteri 22.9 2E+02 0.0042 24.0 5.0 51 94-161 67-117 (173)
251 PRK11194 ribosomal RNA large s 22.9 6.4E+02 0.014 23.8 9.0 96 112-210 221-336 (372)
252 cd03321 mandelate_racemase Man 22.5 1.9E+02 0.0041 26.9 5.5 63 140-204 226-292 (355)
253 cd07938 DRE_TIM_HMGL 3-hydroxy 22.5 5.6E+02 0.012 22.9 10.9 36 9-49 5-40 (274)
254 PRK15418 transcriptional regul 22.4 6.1E+02 0.013 23.2 12.0 34 32-65 19-53 (318)
255 PF13289 SIR2_2: SIR2-like dom 22.4 2.2E+02 0.0048 21.9 5.2 102 102-204 37-143 (143)
256 PRK02901 O-succinylbenzoate sy 22.4 6.2E+02 0.013 23.3 9.0 18 26-43 51-68 (327)
257 PRK14478 nitrogenase molybdenu 22.2 7.3E+02 0.016 24.1 10.6 110 51-176 100-220 (475)
258 PRK12323 DNA polymerase III su 22.2 3.4E+02 0.0075 27.9 7.4 68 89-172 106-175 (700)
259 cd00338 Ser_Recombinase Serine 22.2 1.6E+02 0.0035 22.5 4.3 53 92-158 50-102 (137)
260 COG2040 MHT1 Homocysteine/sele 22.2 6E+02 0.013 23.1 15.5 212 28-271 42-297 (300)
261 PF03851 UvdE: UV-endonuclease 22.1 2.7E+02 0.0059 25.1 6.1 78 29-115 45-152 (275)
262 PLN02383 aspartate semialdehyd 22.0 4.2E+02 0.0091 24.6 7.6 76 27-104 78-188 (344)
263 PRK07003 DNA polymerase III su 21.9 3.3E+02 0.0072 28.6 7.3 91 90-202 102-197 (830)
264 PRK14454 ribosomal RNA large s 21.9 6.5E+02 0.014 23.4 8.8 98 110-210 211-325 (342)
265 COG2355 Zn-dependent dipeptida 21.6 3.6E+02 0.0077 24.8 6.8 95 132-236 103-217 (313)
266 PF05049 IIGP: Interferon-indu 21.6 1.1E+02 0.0024 28.9 3.7 73 54-145 129-215 (376)
267 PRK11858 aksA trans-homoaconit 21.6 6.8E+02 0.015 23.5 9.9 95 92-209 27-138 (378)
268 TIGR03586 PseI pseudaminic aci 21.6 6.5E+02 0.014 23.3 10.7 114 26-168 74-209 (327)
269 cd03328 MR_like_3 Mandelate ra 21.5 2.2E+02 0.0047 26.5 5.6 66 139-206 221-292 (352)
270 COG4152 ABC-type uncharacteriz 21.4 2.9E+02 0.0063 24.8 5.9 38 133-172 163-200 (300)
271 PLN02775 Probable dihydrodipic 21.4 4.3E+02 0.0094 23.9 7.3 71 95-184 67-137 (286)
272 PRK14331 (dimethylallyl)adenos 21.4 4.9E+02 0.011 24.9 8.2 66 133-200 174-252 (437)
273 smart00148 PLCXc Phospholipase 21.3 82 0.0018 24.9 2.4 17 32-48 31-47 (135)
274 TIGR00221 nagA N-acetylglucosa 21.2 7E+02 0.015 23.5 10.8 34 139-172 179-212 (380)
275 PRK10551 phage resistance prot 21.2 7.7E+02 0.017 24.3 9.7 114 74-206 348-473 (518)
276 PF00155 Aminotran_1_2: Aminot 21.2 6.2E+02 0.013 22.9 11.3 148 30-209 19-190 (363)
277 PF02679 ComA: (2R)-phospho-3- 21.2 2.8E+02 0.006 24.5 5.9 101 91-205 22-131 (244)
278 PRK06256 biotin synthase; Vali 21.0 6.4E+02 0.014 23.0 9.7 134 27-188 92-240 (336)
279 PLN02428 lipoic acid synthase 21.0 6.9E+02 0.015 23.4 14.2 168 26-211 130-325 (349)
280 PF02817 E3_binding: e3 bindin 21.0 60 0.0013 19.8 1.2 20 221-240 3-22 (39)
281 COG4669 EscJ Type III secretor 21.0 3.8E+02 0.0082 23.6 6.5 79 25-104 27-122 (246)
282 PF01527 HTH_Tnp_1: Transposas 20.6 30 0.00066 23.9 -0.2 40 26-65 7-47 (76)
283 PRK14453 chloramphenicol/florf 20.6 6.6E+02 0.014 23.4 8.6 103 106-211 203-330 (347)
284 PRK03459 rnpA ribonuclease P; 20.6 3.3E+02 0.0072 21.1 5.7 64 72-149 48-114 (122)
285 PRK14338 (dimethylallyl)adenos 20.5 7E+02 0.015 24.1 9.1 67 133-200 183-262 (459)
286 COG1104 NifS Cysteine sulfinat 20.5 2.4E+02 0.0051 26.8 5.6 71 135-205 100-176 (386)
287 PF13378 MR_MLE_C: Enolase C-t 20.5 1.5E+02 0.0032 22.1 3.6 49 158-208 3-54 (111)
288 PF10668 Phage_terminase: Phag 20.4 97 0.0021 21.0 2.2 17 226-242 24-40 (60)
289 TIGR03471 HpnJ hopanoid biosyn 20.4 7.8E+02 0.017 23.8 10.2 120 133-269 226-361 (472)
290 PRK11359 cyclic-di-GMP phospho 20.3 9.3E+02 0.02 24.6 11.2 104 86-207 640-755 (799)
291 PF10007 DUF2250: Uncharacteri 20.3 1.8E+02 0.0039 21.5 3.8 51 92-159 8-58 (92)
292 TIGR03849 arch_ComA phosphosul 20.3 6E+02 0.013 22.4 7.9 98 92-205 10-118 (237)
293 PRK04165 acetyl-CoA decarbonyl 20.3 7.7E+02 0.017 24.0 9.2 81 107-208 127-209 (450)
294 PRK08645 bifunctional homocyst 20.3 9E+02 0.02 24.4 20.9 211 27-271 41-286 (612)
295 PRK14847 hypothetical protein; 20.3 6.7E+02 0.015 23.3 8.4 99 92-210 55-180 (333)
296 PF09012 FeoC: FeoC like trans 20.2 1.4E+02 0.0031 20.3 3.2 27 134-160 26-52 (69)
297 PF13380 CoA_binding_2: CoA bi 20.1 4E+02 0.0086 20.2 6.7 20 187-206 89-108 (116)
298 PRK15489 nfrB bacteriophage N4 20.1 6.5E+02 0.014 26.1 9.0 176 51-249 79-278 (703)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.1e-69 Score=476.32 Aligned_cols=264 Identities=46% Similarity=0.795 Sum_probs=247.8
Q ss_pred cCceEecCCCcccCccccccccCCchh-HHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEecc
Q 021241 4 EIRQFVLNTGAKIPSVGLGTWQSDPGV-VGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKL 82 (315)
Q Consensus 4 ~m~~~~l~tg~~vs~lglGt~~~~~~~-~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~ 82 (315)
++++.++++|.+||.||||||+.+..+ +.+.|.+|++.|+|+||||..||||+.+|++|++. | ++|+++||+||+
T Consensus 2 ~~~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~-v~ReelFittKv 77 (280)
T COG0656 2 MKTKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---G-VPREELFITTKV 77 (280)
T ss_pred CCceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---C-CCHHHeEEEeec
Confidence 567788999999999999999987776 99999999999999999999999999999999983 4 799999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCH
Q 021241 83 WNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFST 162 (315)
Q Consensus 83 ~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 162 (315)
|+.+.+++.+.+++++||+|||+||+|||++|||.+. .. ..+.++|++|++++++|+||+||||||+.
T Consensus 78 w~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~-----------~~~~etw~alE~l~~~G~ir~IGVSNF~~ 145 (280)
T COG0656 78 WPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KY-----------VVIEETWKALEELVDEGLIRAIGVSNFGV 145 (280)
T ss_pred CCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cC-----------ccHHHHHHHHHHHHhcCCccEEEeeCCCH
Confidence 9999999999999999999999999999999999763 11 23789999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHH
Q 021241 163 KKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVC 242 (315)
Q Consensus 163 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~a 242 (315)
.+++++++.+++.|++||++|||+.++.+++++|+++||.+++||||++|+ .++.++.+..+|++||.|++|++
T Consensus 146 ~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~------~l~~~~~l~~Ia~k~g~t~AQv~ 219 (280)
T COG0656 146 EHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG------KLLDNPVLAEIAKKYGKTPAQVA 219 (280)
T ss_pred HHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc------ccccChHHHHHHHHhCCCHHHHH
Confidence 999999999889999999999999999999999999999999999998753 27888999999999999999999
Q ss_pred HHHHHhcCCeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHcccccc
Q 021241 243 LRWGLQMGNSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIEQAR 289 (315)
Q Consensus 243 l~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~ 289 (315)
|+|++++|+++||.+++++|+++|++++++.||++||++|+++....
T Consensus 220 L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 220 LRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred HHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999998833
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.5e-67 Score=464.58 Aligned_cols=284 Identities=54% Similarity=0.904 Sum_probs=259.4
Q ss_pred CCccCceEecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEe
Q 021241 1 MANEIRQFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITS 80 (315)
Q Consensus 1 m~~~m~~~~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~t 80 (315)
|+... +.+|++|.++|.||||||+.++.++.+.+..|++.|+||||||..||||+.+|++|++.+.++.++|+++||+|
T Consensus 1 M~~~~-~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTS 79 (300)
T KOG1577|consen 1 MSSKT-TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITS 79 (300)
T ss_pred CCccc-eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeee
Confidence 55555 78899999999999999998889999999999999999999999999999999999999988889999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCC--CCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec
Q 021241 81 KLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGF--KPENLDKPDIPSTWKAMEALYDSGKARAIGVS 158 (315)
Q Consensus 81 K~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (315)
|+|+..+.++.++.++++||++||+||+|||++|||...++....- ........++.++|++||+++++|++|+||||
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVS 159 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVS 159 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeee
Confidence 9999999999999999999999999999999999998763310000 01111225789999999999999999999999
Q ss_pred cCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCH
Q 021241 159 NFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTP 238 (315)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~ 238 (315)
||+..++++++..+.++|.++|++++|+.++.+++++|+++||.|.||||||.++. +. .++.++.+.++|++||.|+
T Consensus 160 NF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~kt~ 236 (300)
T KOG1577|consen 160 NFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYNKTP 236 (300)
T ss_pred cCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999988764 22 6788999999999999999
Q ss_pred HHHHHHHHHhcCCeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHccccc
Q 021241 239 AQVCLRWGLQMGNSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIEQA 288 (315)
Q Consensus 239 aq~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 288 (315)
+|++|||++++|++|||.++|++|++||++++++.||++|++.|+.....
T Consensus 237 aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~ 286 (300)
T KOG1577|consen 237 AQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSN 286 (300)
T ss_pred HHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999988773
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.4e-60 Score=424.10 Aligned_cols=250 Identities=34% Similarity=0.590 Sum_probs=229.2
Q ss_pred ccCccccccccCCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHH
Q 021241 15 KIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPE 94 (315)
Q Consensus 15 ~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~ 94 (315)
+||.||||||+.+.+++.+++++|++.|||+||||+.||+|+.+|++|++. + ++|+++||+||++....+++.+++
T Consensus 2 ~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 2 SIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHHHHH
Confidence 689999999998888899999999999999999999999999999999863 3 479999999999766678899999
Q ss_pred HHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCC
Q 021241 95 ALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACV 174 (315)
Q Consensus 95 ~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (315)
++++||+|||+||||+|++|||++.. . .+..++|++|++|+++||||+||||||+.++++++++..+.
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~-~-----------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 145 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPND-E-----------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGA 145 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCC-C-----------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCC
Confidence 99999999999999999999986521 1 46789999999999999999999999999999999887654
Q ss_pred -CCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHHHHHhcCCee
Q 021241 175 -PPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMGNSL 253 (315)
Q Consensus 175 -~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~~~ 253 (315)
+++++|++||++.++.+++++|+++||++++|+||++| .++..+.+.++|+++|+|++|+||+|+++++.++
T Consensus 146 ~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G-------~~~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~ 218 (267)
T PRK11172 146 ENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYG-------KVLKDPVIARIAAKHNATPAQVILAWAMQLGYSV 218 (267)
T ss_pred CCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCC-------cccCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEe
Confidence 68999999999999889999999999999999999874 2344578999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhccCCCCCCHHHHHHHHcccc
Q 021241 254 LPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 254 i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 287 (315)
|+|+++++|+++|+++++++||++++++|+++.+
T Consensus 219 i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~ 252 (267)
T PRK11172 219 IPSSTKRENLASNLLAQDLQLDAEDMAAIAALDR 252 (267)
T ss_pred ecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhcc
Confidence 9999999999999999999999999999999976
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=7.6e-60 Score=430.65 Aligned_cols=262 Identities=31% Similarity=0.478 Sum_probs=233.5
Q ss_pred CceEec-CCCcccCccccccccCC-------chhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCC
Q 021241 5 IRQFVL-NTGAKIPSVGLGTWQSD-------PGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKR 73 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglGt~~~~-------~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R 73 (315)
|+|++| ++|++||+||||||... .+++.++|++|+|+|||+||||+.|| ||++||++|++. + .|
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~R 75 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--RR 75 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--CC
Confidence 789999 79999999999999743 23566799999999999999999999 799999999985 2 28
Q ss_pred CceEEEeccCCC----------CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021241 74 EDLWITSKLWNA----------YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAM 143 (315)
Q Consensus 74 ~~v~i~tK~~~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 143 (315)
++++|+||++.. +.++++|+++++.||+|||||||||||+|||+.. .+..+++++|
T Consensus 76 d~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~--------------~p~~e~~~aL 141 (316)
T COG0667 76 DKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE--------------TPIEETLEAL 141 (316)
T ss_pred CeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC--------------CCHHHHHHHH
Confidence 999999999432 3478899999999999999999999999999874 7889999999
Q ss_pred HHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCCCCCCCCCCcc
Q 021241 144 EALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDV 221 (315)
Q Consensus 144 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~ 221 (315)
.+|+++||||+||+||++++++.++++.+ .+++++|.+||+++++ .+++++|+++||++++|+||++ |+++++...
T Consensus 142 ~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~~~ 219 (316)
T COG0667 142 DELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKYLP 219 (316)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCcCC
Confidence 99999999999999999999999999886 6789999999999976 4589999999999999999987 778776322
Q ss_pred ------------CC----------ChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHH
Q 021241 222 ------------LK----------HPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPED 277 (315)
Q Consensus 222 ------------~~----------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~ 277 (315)
+. ...++.+|+++|+|++|+||+|++++| +++|+|+++++||++|+++++..|+++
T Consensus 220 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~ 299 (316)
T COG0667 220 GPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEE 299 (316)
T ss_pred CcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHH
Confidence 10 034889999999999999999999997 689999999999999999999999999
Q ss_pred HHHHHHcccc
Q 021241 278 LLAKFSGIEQ 287 (315)
Q Consensus 278 ~~~~l~~~~~ 287 (315)
++++|+....
T Consensus 300 ~~~~l~~~~~ 309 (316)
T COG0667 300 ELAALDEISA 309 (316)
T ss_pred HHHHHHHHhh
Confidence 9999997755
No 5
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.2e-59 Score=418.32 Aligned_cols=274 Identities=28% Similarity=0.391 Sum_probs=243.9
Q ss_pred cCceEec-CCCcccCccccccc-------cCCchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCC
Q 021241 4 EIRQFVL-NTGAKIPSVGLGTW-------QSDPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVK 72 (315)
Q Consensus 4 ~m~~~~l-~tg~~vs~lglGt~-------~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~ 72 (315)
.|.|+++ ++|++||++|||+| +.+++++.+++++|+|+|+|+||||++|| ||.++|++|++. + .+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~-~~ 86 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G-WR 86 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C-Cc
Confidence 4889999 88999999999993 25778999999999999999999999999 699999999985 2 47
Q ss_pred CCceEEEeccCCC-------CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021241 73 REDLWITSKLWNA-------YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEA 145 (315)
Q Consensus 73 R~~v~i~tK~~~~-------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 145 (315)
|++++|+||++.. ..+...+...++.|++|||++||||||+||+|+. .++++++++|.+
T Consensus 87 R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~--------------~piee~m~aL~~ 152 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM--------------VPIEETMRALTD 152 (336)
T ss_pred CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC--------------CCHHHHHHHHHH
Confidence 9999999998432 2456789999999999999999999999999876 889999999999
Q ss_pred HHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch---HHHHHHHHhcCceEEEecCCCCCCCCCCCCcc-
Q 021241 146 LYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ---QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDV- 221 (315)
Q Consensus 146 l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~- 221 (315)
++++|||||||+|+++++++.++...+.+++.++|++||++.|+ .+++++|++.||++++||||++ |+++++...
T Consensus 153 lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~Ltgk~~~~ 231 (336)
T KOG1575|consen 153 LVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GLLTGKYKLG 231 (336)
T ss_pred HHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ceeccCcccc
Confidence 99999999999999999999999999888899999999999997 5699999999999999999976 788876211
Q ss_pred ----------------CC----------ChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCC
Q 021241 222 ----------------LK----------HPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWS 273 (315)
Q Consensus 222 ----------------~~----------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~ 273 (315)
.. .+++.++|+++|+|++|+||+|+++++ ++||||+++++|++||++|+.+.
T Consensus 232 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~ 311 (336)
T KOG1575|consen 232 EDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVK 311 (336)
T ss_pred cccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhcc
Confidence 00 134889999999999999999999998 78999999999999999999999
Q ss_pred CCHHHHHHHHccccccccccccc
Q 021241 274 IPEDLLAKFSGIEQARLLRGTSF 296 (315)
Q Consensus 274 L~~~~~~~l~~~~~~~~~~~~~~ 296 (315)
|+++++++|+...+.....++++
T Consensus 312 Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 312 LTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred CCHHHHHHHHHhhccccCcCCCC
Confidence 99999999999988655555443
No 6
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.5e-58 Score=416.21 Aligned_cols=259 Identities=40% Similarity=0.730 Sum_probs=235.9
Q ss_pred CceEecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCC
Q 021241 5 IRQFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWN 84 (315)
Q Consensus 5 m~~~~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~ 84 (315)
-++.+|++|+.||+||||||+.+++++.++|++|++.|||+||||+.||+|+.+|++|++. + ++|++++|+||++.
T Consensus 4 ~~~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~tK~~~ 79 (275)
T PRK11565 4 PTVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITTKLWN 79 (275)
T ss_pred CceEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEEEecC
Confidence 3456789999999999999998888999999999999999999999999999999999864 3 46999999999864
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhH
Q 021241 85 AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKK 164 (315)
Q Consensus 85 ~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (315)
.+++.+++++++||+|||+||||+|++|||++.. ....++|++|++|+++|+||+||||||++++
T Consensus 80 --~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~-------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 144 (275)
T PRK11565 80 --DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAI-------------DHYVEAWKGMIELQKEGLIKSIGVCNFQIHH 144 (275)
T ss_pred --cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCc-------------CcHHHHHHHHHHHHHcCCeeEEeeccCCHHH
Confidence 3567999999999999999999999999997531 2468999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHH
Q 021241 165 LGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLR 244 (315)
Q Consensus 165 l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~ 244 (315)
+++++...+++|.++|++|+++.++.+++++|+++||++++|+||++|+ ...+..+.+.++|+++|+|++|+||+
T Consensus 145 l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~-----~~~~~~~~l~~ia~~~g~s~aq~aL~ 219 (275)
T PRK11565 145 LQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGG-----KGVFDQKVIRDLADKYGKTPAQIVIR 219 (275)
T ss_pred HHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCC-----cccccCHHHHHHHHHhCCCHHHHHHH
Confidence 9999887777899999999999988899999999999999999997643 12345689999999999999999999
Q ss_pred HHHhcCCeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHcccc
Q 021241 245 WGLQMGNSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 245 ~~l~~~~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 287 (315)
|+++++.++|||+++++|+++|+++++++|+++++++|+++..
T Consensus 220 w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 220 WHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred HHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 9999998999999999999999999999999999999999875
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.8e-57 Score=417.57 Aligned_cols=260 Identities=27% Similarity=0.413 Sum_probs=225.9
Q ss_pred eEec-CCCcccCcccccccc-----CCchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCceE
Q 021241 7 QFVL-NTGAKIPSVGLGTWQ-----SDPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKREDLW 77 (315)
Q Consensus 7 ~~~l-~tg~~vs~lglGt~~-----~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~ 77 (315)
||+| ++|++||+||||||+ .+.+++.++|+.|+++|||+||||+.|| ||+++|++|+.. + .+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~-~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---G-WRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---C-CCcccEE
Confidence 4677 899999999999995 3567899999999999999999999998 799999999853 2 3699999
Q ss_pred EEeccCCC-------CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 021241 78 ITSKLWNA-------YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG 150 (315)
Q Consensus 78 i~tK~~~~-------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 150 (315)
|+||++.. +.+++.+++++++||+||||||||+|++|||+.. .+.+++|++|++|+++|
T Consensus 77 iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~--------------~~~~e~~~aL~~l~~~G 142 (317)
T TIGR01293 77 ITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN--------------TPMEETVRAMTYVINQG 142 (317)
T ss_pred EEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC--------------CCHHHHHHHHHHHHHcC
Confidence 99998421 2467899999999999999999999999999753 56889999999999999
Q ss_pred CeeEEeeccCCHhHHHHHHHHcC----CCCcccccccCCCcch---HHHHHHHHhcCceEEEecCCCCCCCCCCCCcc--
Q 021241 151 KARAIGVSNFSTKKLGDLLEVAC----VPPAVNQVECHPSWQQ---QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDV-- 221 (315)
Q Consensus 151 ~ir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~-- 221 (315)
|||+||+|||+.+++.++...+. ++++++|++||++.++ .+++++|+++||++++|+||++ |+++++..-
T Consensus 143 ~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~~~~ 221 (317)
T TIGR01293 143 MAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYDSGI 221 (317)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCCCCC
Confidence 99999999999999988765432 5788999999999885 3699999999999999999976 677654210
Q ss_pred -------------CC--------------ChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCC
Q 021241 222 -------------LK--------------HPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDW 272 (315)
Q Consensus 222 -------------~~--------------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 272 (315)
+. .+.++++|+++|+|++|+||+|++++| +++|+|+++++|+++|+++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~ 301 (317)
T TIGR01293 222 PPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQV 301 (317)
T ss_pred CCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhc
Confidence 00 045888999999999999999999997 5799999999999999999987
Q ss_pred --CCCHHHHHHHHcc
Q 021241 273 --SIPEDLLAKFSGI 285 (315)
Q Consensus 273 --~L~~~~~~~l~~~ 285 (315)
+||++++++|+++
T Consensus 302 ~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 302 LPKLSSSIIHEIDSI 316 (317)
T ss_pred cCCCCHHHHHHHHhh
Confidence 9999999999875
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.7e-57 Score=418.49 Aligned_cols=267 Identities=22% Similarity=0.361 Sum_probs=229.7
Q ss_pred ccCceEec-CCCcccCcccccccc-C----CchhHHHHHHHHHHccCCEEeCCCCcC-----CHHHHHHHHHhhhhcCCC
Q 021241 3 NEIRQFVL-NTGAKIPSVGLGTWQ-S----DPGVVGNAVAAAIKAGYRHIDCAQIYG-----NEKEIGLVLKKFFEDAVV 71 (315)
Q Consensus 3 ~~m~~~~l-~tg~~vs~lglGt~~-~----~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-----~E~~lG~al~~~~~~~~~ 71 (315)
..|+|++| +||++||+||||||+ . +.+++.++|++|+++|||+||||+.|| +|+.+|++|++.. ..
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~---~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF---AA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc---cC
Confidence 35999999 899999999999996 3 345678999999999999999999998 6999999998631 12
Q ss_pred CCCceEEEeccCC----C----CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021241 72 KREDLWITSKLWN----A----YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAM 143 (315)
Q Consensus 72 ~R~~v~i~tK~~~----~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 143 (315)
.|+++||+||++. . +.+++.+++++++||+||||||||+|++|||+.. .+.+++|++|
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~--------------~~~~e~~~al 153 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN--------------TPMEETASAL 153 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC--------------CCHHHHHHHH
Confidence 5999999999742 1 2457789999999999999999999999999753 5689999999
Q ss_pred HHHHHcCCeeEEeeccCCHhHHHHHHHH---cCCCCcccccccCCCcch---HHHHHHHHhcCceEEEecCCCCCCCCCC
Q 021241 144 EALYDSGKARAIGVSNFSTKKLGDLLEV---ACVPPAVNQVECHPSWQQ---QKLREFCKSKGVHLSGYSPLGSPGTTWI 217 (315)
Q Consensus 144 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~via~~pl~~gg~~~~ 217 (315)
++|+++||||+||||||++++++++.+. .+.+++++|++||++++. .+++++|+++||++++|+||++ |++++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~Lt~ 232 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GLLTG 232 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-ccccC
Confidence 9999999999999999999988866553 346788999999999975 4699999999999999999976 67765
Q ss_pred CCc--------c--------------CC------ChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhh
Q 021241 218 KSD--------V--------------LK------HPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENL 267 (315)
Q Consensus 218 ~~~--------~--------------~~------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl 267 (315)
+.. . .. .+.+.++|+++|+|++|+||+|++++| +++|||+++++||++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 233 KYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 410 0 00 146788999999999999999999998 67999999999999999
Q ss_pred ccCC-CCCCHHHHHHHHcccc
Q 021241 268 DVFD-WSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 268 ~a~~-~~L~~~~~~~l~~~~~ 287 (315)
+++. ++|+++++++|+++.+
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~ 333 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIA 333 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhC
Confidence 9984 7999999999998764
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.6e-57 Score=418.10 Aligned_cols=277 Identities=28% Similarity=0.365 Sum_probs=230.4
Q ss_pred CceEec-CCCcccCccccccccC----CchhHHHHHHHHHHccCCEEeCCCCcC----------CHHHHHHHHHhhhhcC
Q 021241 5 IRQFVL-NTGAKIPSVGLGTWQS----DPGVVGNAVAAAIKAGYRHIDCAQIYG----------NEKEIGLVLKKFFEDA 69 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglGt~~~----~~~~~~~~l~~Al~~Gi~~~DTA~~Yg----------~E~~lG~al~~~~~~~ 69 (315)
|+|++| +||++||+||||||++ +.+++.++|+.|+++|||+||||+.|| ||+.+|++|+.. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 789999 8999999999999975 457899999999999999999999996 899999999863 2
Q ss_pred CCCCCceEEEeccCCC------------CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccC--CCCCCCC-CCCCCC
Q 021241 70 VVKREDLWITSKLWNA------------YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKK--GSVGFKP-ENLDKP 134 (315)
Q Consensus 70 ~~~R~~v~i~tK~~~~------------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~--~~~~~~~-~~~~~~ 134 (315)
+|++++|+||++.. +.+++.+++++++||+||||||||||++|||+.... +...... ......
T Consensus 78 --~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T PRK10625 78 --SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAV 155 (346)
T ss_pred --CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCC
Confidence 59999999998531 246789999999999999999999999999965210 0000000 000014
Q ss_pred CHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHc---C-CCCcccccccCCCcch--HHHHHHHHhcCceEEEecC
Q 021241 135 DIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVA---C-VPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 135 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~p 208 (315)
++.++|++|++|+++||||+||+|||+.+++.+++..+ . ..+.++|++||+++++ .+++++|+++||++++|+|
T Consensus 156 ~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~sp 235 (346)
T PRK10625 156 SLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSC 235 (346)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEecc
Confidence 67899999999999999999999999999998776543 2 3567899999999876 5799999999999999999
Q ss_pred CCCCCCCCCCCc-----------cCC-------------ChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHH
Q 021241 209 LGSPGTTWIKSD-----------VLK-------------HPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVR 262 (315)
Q Consensus 209 l~~gg~~~~~~~-----------~~~-------------~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~ 262 (315)
|++ |+++++.. .+. .+.++++|+++|+|++|+||+|++++| +++|+|+++++|
T Consensus 236 L~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~ 314 (346)
T PRK10625 236 LAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQ 314 (346)
T ss_pred ccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHH
Confidence 976 66665410 111 146889999999999999999999998 468999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHcccc
Q 021241 263 MKENLDVFDWSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 263 l~enl~a~~~~L~~~~~~~l~~~~~ 287 (315)
+++|+++++++|+++++++|+++..
T Consensus 315 l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 315 LKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999998864
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1e-54 Score=393.76 Aligned_cols=260 Identities=41% Similarity=0.646 Sum_probs=231.5
Q ss_pred eEec-CCCcccCccccccccCC-----chhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCceE
Q 021241 7 QFVL-NTGAKIPSVGLGTWQSD-----PGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKREDLW 77 (315)
Q Consensus 7 ~~~l-~tg~~vs~lglGt~~~~-----~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~ 77 (315)
|++| +||++||+||||||... .+++.++++.|++.|||+||||+.|| +|+.+|++|++. + .|++++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~--~R~~~~ 75 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G--PREEVF 75 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C--CcCcEE
Confidence 4678 69999999999999754 47899999999999999999999999 899999999985 1 499999
Q ss_pred EEeccCCCC-----CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q 021241 78 ITSKLWNAY-----HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKA 152 (315)
Q Consensus 78 i~tK~~~~~-----~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~i 152 (315)
|+||++... .+++.+++++++||++||+||||+|+||||+... ....++|++|++++++|+|
T Consensus 76 i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~-------------~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 76 IATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT-------------PDIEETLRALEELVKEGKI 142 (285)
T ss_pred EEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC-------------CCHHHHHHHHHHHHHcCCc
Confidence 999997653 5789999999999999999999999999997642 2379999999999999999
Q ss_pred eEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHH--HHHHHHhcCceEEEecCCCCCCCCCCCCccCC-------
Q 021241 153 RAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQK--LREFCKSKGVHLSGYSPLGSPGTTWIKSDVLK------- 223 (315)
Q Consensus 153 r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~------- 223 (315)
|+||||||+.+.+.+++..+..+|+++|++||++++..+ ++++|+++||++++|+||++ |.+.++.....
T Consensus 143 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~~~~ 221 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPEGDL 221 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCChhhH
Confidence 999999999999999998877799999999999999854 99999999999999999976 55554422211
Q ss_pred ChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHcc
Q 021241 224 HPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGI 285 (315)
Q Consensus 224 ~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 285 (315)
.+.+..+++++++|++|+|++|++++| .++|+|+++++|+++|++++..+|++++++.|+++
T Consensus 222 ~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 222 LEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 256889999999999999999999996 78999999999999999999999999999999863
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-54 Score=393.21 Aligned_cols=261 Identities=25% Similarity=0.375 Sum_probs=223.7
Q ss_pred CCccCceEec-CCCcccCccccccccC----------CchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhh
Q 021241 1 MANEIRQFVL-NTGAKIPSVGLGTWQS----------DPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFF 66 (315)
Q Consensus 1 m~~~m~~~~l-~tg~~vs~lglGt~~~----------~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~ 66 (315)
|++.|...+. -+|++||+||||||+. +++++.++|+.|+++|||+||||+.|| +|+.+|++++.
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-- 78 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-- 78 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc--
Confidence 6666665444 2399999999999974 246789999999999999999999998 48999999964
Q ss_pred hcCCCCCCceEEEeccCC---------CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCc-cCCCCCCCCCCCCCCCH
Q 021241 67 EDAVVKREDLWITSKLWN---------AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKM-KKGSVGFKPENLDKPDI 136 (315)
Q Consensus 67 ~~~~~~R~~v~i~tK~~~---------~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~-~~~~~~~~~~~~~~~~~ 136 (315)
.|++++|+||++. .+.+++.+++++++||+||||||||+|++|++... .+. ..++
T Consensus 79 -----~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~----------~~~~ 143 (290)
T PRK10376 79 -----YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA----------EGSI 143 (290)
T ss_pred -----CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC----------CCCH
Confidence 4999999999742 34567899999999999999999999999985321 000 0457
Q ss_pred HHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch-HHHHHHHHhcCceEEEecCCCCCCCC
Q 021241 137 PSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ-QKLREFCKSKGVHLSGYSPLGSPGTT 215 (315)
Q Consensus 137 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~via~~pl~~gg~~ 215 (315)
.++|++|++|+++||||+||||||+.+++.++.+.+ +++++|++||++.+. .+++++|+++||++++|+||++ +
T Consensus 144 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~-- 218 (290)
T PRK10376 144 EEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-F-- 218 (290)
T ss_pred HHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-C--
Confidence 899999999999999999999999999999988764 568999999999876 6799999999999999999963 2
Q ss_pred CCCCccCCChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHcccc
Q 021241 216 WIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 216 ~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 287 (315)
.....+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 219 ----~~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 219 ----TPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ----ChhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 2233578999999999999999999999874 6889999999999999999999999999999998754
No 12
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.7e-54 Score=397.33 Aligned_cols=265 Identities=25% Similarity=0.299 Sum_probs=223.3
Q ss_pred eEec-CCCcccCccccccccC-------CchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCc
Q 021241 7 QFVL-NTGAKIPSVGLGTWQS-------DPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKRED 75 (315)
Q Consensus 7 ~~~l-~tg~~vs~lglGt~~~-------~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~ 75 (315)
||+| +||++||.||||||+. +.+++.++|++|+++|||+||||+.|| +|+.+|++|++. + .+|++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~~ 76 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPREK 76 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcce
Confidence 5778 8999999999999853 567899999999999999999999997 599999999874 2 36999
Q ss_pred eEEEeccCC----CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 021241 76 LWITSKLWN----AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK 151 (315)
Q Consensus 76 v~i~tK~~~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 151 (315)
+||+||++. .+.+++.+++++++||+|||+||||+|++|||+..... ....++|++|++|+++||
T Consensus 77 v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~-----------~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 77 YVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLD-----------QIVNETIPALQKLKESGK 145 (314)
T ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchh-----------hhHHHHHHHHHHHHHCCC
Confidence 999999864 24578899999999999999999999999998642111 456789999999999999
Q ss_pred eeEEeeccCCHhHHHHHHHHcC---CCCcccccccCCCcch-HHHHHHHHhcCceEEEecCCCCCCCCCCCCc-cC--CC
Q 021241 152 ARAIGVSNFSTKKLGDLLEVAC---VPPAVNQVECHPSWQQ-QKLREFCKSKGVHLSGYSPLGSPGTTWIKSD-VL--KH 224 (315)
Q Consensus 152 ir~iGvs~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~via~~pl~~gg~~~~~~~-~~--~~ 224 (315)
||+||+|||+++++..+.+... +.+..+|++||+.++. .+++++|+++||++++|+||++ |+++++.. .+ ..
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~ 224 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWHPAP 224 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCCCCC
Confidence 9999999999998887765432 2344467888887764 5899999999999999999976 67776421 11 11
Q ss_pred -------hHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCC----CCCCHHHHHHHHcccc
Q 021241 225 -------PVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFD----WSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 225 -------~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~----~~L~~~~~~~l~~~~~ 287 (315)
+.++.+|+++|+|++|+||+|++++| +++|+|+++++|+++|+++++ .+|+++++++|+++..
T Consensus 225 ~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 225 PELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 34678999999999999999999998 578999999999999999976 3799999999998765
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.3e-53 Score=383.47 Aligned_cols=250 Identities=34% Similarity=0.611 Sum_probs=212.9
Q ss_pred cccccccc-----CCchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCceEEEecc-----CC
Q 021241 18 SVGLGTWQ-----SDPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKREDLWITSKL-----WN 84 (315)
Q Consensus 18 ~lglGt~~-----~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~i~tK~-----~~ 84 (315)
+||||||+ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++|++. ..+|++++|+||+ +.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~----~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS----RVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT----SSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc----cccccccccccccccccccc
Confidence 58999985 5678899999999999999999999993 799999999982 2589999999999 55
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCC-HHHHHHHHHHHHHcCCeeEEeeccCCHh
Q 021241 85 AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPD-IPSTWKAMEALYDSGKARAIGVSNFSTK 163 (315)
Q Consensus 85 ~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 163 (315)
...+++.+++++++||++||+||||+|++|||+.. .. ..++|++|++|+++|+||+||||||+++
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 142 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS--------------EDALEEVWEALEELKKEGKIRHIGVSNFSPE 142 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT--------------SSHHHHHHHHHHHHHHTTSEEEEEEES--HH
T ss_pred ccccccccccccccccccccccchhcccccccccc--------------ccccchhhhhhhhcccccccccccccccccc
Confidence 56788999999999999999999999999999875 44 8999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccccccCCCcc--hHHHHHHHHhcCceEEEecCCCCCCCCCCCCcc--------------CCChHH
Q 021241 164 KLGDLLEVACVPPAVNQVECHPSWQ--QQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDV--------------LKHPVV 227 (315)
Q Consensus 164 ~l~~~~~~~~~~~~~~q~~~~~~~~--~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~--------------~~~~~l 227 (315)
.++++.....++|+++|++||++.+ ..+++++|+++||++++|+|+++ |+++++... ...+.+
T Consensus 143 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (283)
T PF00248_consen 143 QLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELADAL 221 (283)
T ss_dssp HHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhhhh
Confidence 9999976677899999999999933 47899999999999999999976 555443211 233689
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHccc
Q 021241 228 NMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIE 286 (315)
Q Consensus 228 ~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 286 (315)
.++++++|+|++|+||+|+++++ .++|+|+++++|+++|+++++.+||++++++|+++.
T Consensus 222 ~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 222 RELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999765 799999999999999999999999999999999874
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.8e-52 Score=352.27 Aligned_cols=264 Identities=25% Similarity=0.366 Sum_probs=238.7
Q ss_pred CceEec-CCCcccCcccccccc-----CCchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCc
Q 021241 5 IRQFVL-NTGAKIPSVGLGTWQ-----SDPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKRED 75 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglGt~~-----~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~ 75 (315)
|+++++ +.|+++|++.+|+|+ ..++++...+..|++.||++||-|+.|| .|+++|.+|+-. +-.|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhh
Confidence 788899 699999999999997 4556889999999999999999999999 599999999864 237999
Q ss_pred eEEEeccC------------CCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 021241 76 LWITSKLW------------NAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAM 143 (315)
Q Consensus 76 v~i~tK~~------------~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 143 (315)
+.|.||++ ..+.+.++|.+++|+||++|+|||+|++++|.|++. ++.+|+.+++
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL--------------md~eeVAeAf 142 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL--------------MDAEEVAEAF 142 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc--------------CCHHHHHHHH
Confidence 99999994 245678999999999999999999999999999987 7889999999
Q ss_pred HHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch---HHHHHHHHhcCceEEEecCCCCCCCCCCCCc
Q 021241 144 EALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ---QKLREFCKSKGVHLSGYSPLGSPGTTWIKSD 220 (315)
Q Consensus 144 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~via~~pl~~gg~~~~~~~ 220 (315)
..|++.||||++|||||++.+++-+.+....+.++||+++|+++.. .+.+++|+.+.|.+++||||++|+++.+ .+
T Consensus 143 ~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g-~~ 221 (298)
T COG4989 143 THLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG-DD 221 (298)
T ss_pred HHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC-Cc
Confidence 9999999999999999999999998888888899999999999876 6799999999999999999998887776 33
Q ss_pred cCC--ChHHHHHHHHhC-CCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHcccc
Q 021241 221 VLK--HPVVNMVAEKLG-KTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 221 ~~~--~~~l~~la~~~~-~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 287 (315)
.+. .+.+..+|.++| .|..+++++|++.+| ..||+|+.+++++++.+++++..||.++|-+|-....
T Consensus 222 ~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 222 KFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred chHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 322 368999999999 799999999999999 5789999999999999999999999999999876654
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.8e-51 Score=372.67 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=210.2
Q ss_pred CcccCccccccccC--------------CchhHHHHHHHHHHccCCEEeCCCCcC-CHHHHHHHHHhhhhcCCCCCCceE
Q 021241 13 GAKIPSVGLGTWQS--------------DPGVVGNAVAAAIKAGYRHIDCAQIYG-NEKEIGLVLKKFFEDAVVKREDLW 77 (315)
Q Consensus 13 g~~vs~lglGt~~~--------------~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~~~~~R~~v~ 77 (315)
+++||+||||||++ +.+++.++|+.|++.|||+||||+.|| ||+.+|++|++. .|++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~------~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP------VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC------CceEee
Confidence 57899999999854 346799999999999999999999999 799999999741 356799
Q ss_pred EEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCC-HHHHHHHHHHHHHcCCeeEEe
Q 021241 78 ITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPD-IPSTWKAMEALYDSGKARAIG 156 (315)
Q Consensus 78 i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~G~ir~iG 156 (315)
|+||. .+.+++.+++++++||+||||||||+|++|||+... .+ ..++|++|++|+++||||+||
T Consensus 76 i~tk~--~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~-------------~~~~~~~~~~l~~l~~~Gkir~iG 140 (292)
T PRK14863 76 LSTVR--ADRGPDFVEAEARASLRRMGVERADAILVHSPTELF-------------GPHGAALWERLQALKDQGLFAKIG 140 (292)
T ss_pred ccccc--ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc-------------CcchHHHHHHHHHHHHcCCcceEe
Confidence 99985 345688999999999999999999999999986421 22 267899999999999999999
Q ss_pred eccCCHhHHHHHHHHcCCCCcccccccCCCcch---HHHHHHHHhcCceEEEecCCCCCCCCCCCCc----cCC-----C
Q 021241 157 VSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ---QKLREFCKSKGVHLSGYSPLGSPGTTWIKSD----VLK-----H 224 (315)
Q Consensus 157 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~via~~pl~~gg~~~~~~~----~~~-----~ 224 (315)
||||+++++.++... .+|+++|++||+++++ .+++++|+++||++++|+||++ |+++.... .+. .
T Consensus 141 vSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~ 217 (292)
T PRK14863 141 VSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGRL 217 (292)
T ss_pred eeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHHH
Confidence 999999998877543 5889999999999986 3599999999999999999987 55553321 111 1
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHHHHHHHHcc
Q 021241 225 PVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPEDLLAKFSGI 285 (315)
Q Consensus 225 ~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 285 (315)
..+.+++.++++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+.+|..-
T Consensus 218 ~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 218 SRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCC
Confidence 34666788889999999999999998 67899999999999999999989999888777643
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.3e-48 Score=347.98 Aligned_cols=275 Identities=23% Similarity=0.302 Sum_probs=231.8
Q ss_pred CceEec-CCCcccCcccccccc--------CCchhHHHHHHHHHHccCCEEeCCCCc--C-CHHHHHHHHHhhhhcCCCC
Q 021241 5 IRQFVL-NTGAKIPSVGLGTWQ--------SDPGVVGNAVAAAIKAGYRHIDCAQIY--G-NEKEIGLVLKKFFEDAVVK 72 (315)
Q Consensus 5 m~~~~l-~tg~~vs~lglGt~~--------~~~~~~~~~l~~Al~~Gi~~~DTA~~Y--g-~E~~lG~al~~~~~~~~~~ 72 (315)
|.||++ +||.++|.+|||+|+ .+.+.+.++|++|++.|||+||||..| | ||..+|+||++. .
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~ 74 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------Y 74 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------c
Confidence 789999 999999999999986 266789999999999999999999999 7 799999999985 6
Q ss_pred CCceEEEeccCCCC-CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 021241 73 REDLWITSKLWNAY-HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK 151 (315)
Q Consensus 73 R~~v~i~tK~~~~~-~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 151 (315)
|++|+++||+.... .+.+.+++-++++|++||+||+|+|++|...... ++.......++.+++++++|+
T Consensus 75 Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~----------~~k~~~~g~~df~~kak~eGk 144 (391)
T COG1453 75 REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET----------WEKIERLGVFDFLEKAKAEGK 144 (391)
T ss_pred cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH----------HHHHHccChHHHHHHHHhcCc
Confidence 99999999996433 4678999999999999999999999999865410 001112337899999999999
Q ss_pred eeEEeeccCCH-hHHHHHHHHcCCCCcccccccCCCcch----HHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChH
Q 021241 152 ARAIGVSNFST-KKLGDLLEVACVPPAVNQVECHPSWQQ----QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPV 226 (315)
Q Consensus 152 ir~iGvs~~~~-~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~ 226 (315)
||++|+|.|+. +.+.+++.. .+++++|++||.++.. .+.+++|.++|++|+.++|+.+|+++.. -.+.
T Consensus 145 Ir~~GFSfHgs~e~~~~iv~a--~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP~~ 217 (391)
T COG1453 145 IRNAGFSFHGSTEVFKEIVDA--YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VPEK 217 (391)
T ss_pred EEEeeecCCCCHHHHHHHHhc--CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CCHH
Confidence 99999999986 556666665 4589999999999986 3789999999999999999987654321 2468
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCC---CCCHHHHHHHHcccc------cccccc
Q 021241 227 VNMVAEKLG--KTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDW---SIPEDLLAKFSGIEQ------ARLLRG 293 (315)
Q Consensus 227 l~~la~~~~--~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~---~L~~~~~~~l~~~~~------~~~~~~ 293 (315)
+.+++++++ .||+..|+||++++| +++++|+++++|++||+..++. +||++|.+.|+.+.+ .-.|++
T Consensus 218 ~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~Ct~ 297 (391)
T COG1453 218 LEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVPCTG 297 (391)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 899999986 689999999999999 6889999999999999998763 499999998888876 233888
Q ss_pred c-ccccccCC
Q 021241 294 T-SFVHETYG 302 (315)
Q Consensus 294 ~-~~~~~~~~ 302 (315)
| +|.+||..
T Consensus 298 C~yC~PCP~g 307 (391)
T COG1453 298 CRYCLPCPSG 307 (391)
T ss_pred ccccCcCCCC
Confidence 8 55568865
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.1e-44 Score=305.57 Aligned_cols=257 Identities=23% Similarity=0.265 Sum_probs=215.5
Q ss_pred cCceEec-CCCcccCcccccccc-------CCchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCC
Q 021241 4 EIRQFVL-NTGAKIPSVGLGTWQ-------SDPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVK 72 (315)
Q Consensus 4 ~m~~~~l-~tg~~vs~lglGt~~-------~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~ 72 (315)
+|+||.+ +||++||+||||... .+.++....+..|++.|||+|||||.|| +|+.+|.++++ +|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vP 94 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VP 94 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CC
Confidence 5999999 999999999999853 3567777778889999999999999999 79999999998 59
Q ss_pred CCceEEEeccCC--------CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHH
Q 021241 73 REDLWITSKLWN--------AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAME 144 (315)
Q Consensus 73 R~~v~i~tK~~~--------~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 144 (315)
|+..||+||+++ .+++++.+++++++||+||++||+|++|+|..+....- ...+.|++.+|+
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l----------d~vl~Etlp~Le 164 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL----------DIVLNETLPALE 164 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc----------cHHHHHHHHHHH
Confidence 999999999965 45778999999999999999999999999987653211 156899999999
Q ss_pred HHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccc--cccCCCcch-HHHHHHHHhcCceEEEecCCCCCCCCCCCCcc
Q 021241 145 ALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQ--VECHPSWQQ-QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDV 221 (315)
Q Consensus 145 ~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~ 221 (315)
++|++||||+|||+.++.+.+..+++......+++- .+|++.+.. -..+++.+..|++|++-++++. |+++.+.+.
T Consensus 165 ~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt~~gp~ 243 (342)
T KOG1576|consen 165 ELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLTNQGPP 243 (342)
T ss_pred HHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhhcCCCC
Confidence 999999999999999999999999877654445554 556655554 4677888899999999999987 677765443
Q ss_pred CCC----------hHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCCCCCHH
Q 021241 222 LKH----------PVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDWSIPED 277 (315)
Q Consensus 222 ~~~----------~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~L~~~ 277 (315)
..+ .+-.++|++.|++.+.+|+.|.++.+ .++++|+++.++++.|+++-...||..
T Consensus 244 ~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~ 311 (342)
T KOG1576|consen 244 PWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSK 311 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccch
Confidence 322 23455778889999999999999987 689999999999999999776678873
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.54 E-value=2.4e-07 Score=79.10 Aligned_cols=138 Identities=27% Similarity=0.331 Sum_probs=97.3
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC----CccceE------eecCCCCccCC--C-CCCCC--C---CCCC
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI----DYLDLY------LMHWPVKMKKG--S-VGFKP--E---NLDK 133 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~----d~iDl~------~lH~p~~~~~~--~-~~~~~--~---~~~~ 133 (315)
.++++-+..|.+-.++.-+.+++..+.-++-+-. .-+|.+ ++|--.-.... + ....+ + ...-
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 5777888888877777777777777766654421 122222 12211000000 0 00000 0 0011
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch-HHHHHHHHhcCceEEEecCC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ-QKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~via~~pl 209 (315)
..+.+.|+.||+++.+|+|..||+|.|++.+++++++.+.+.|.++|+++.-.+.- +++.++|.+++|.+..++--
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 34688999999999999999999999999999999999999999999999877754 79999999999999998754
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.53 E-value=2 Score=36.41 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEV 171 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (315)
+...+++.|....-+..|.+.+..-- .......+.|+++.+-|+--=|++.||.-+....-+-.
T Consensus 60 iq~Dld~gL~~f~d~sFD~VIlsqtL----------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~ 123 (193)
T PF07021_consen 60 IQGDLDEGLADFPDQSFDYVILSQTL----------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL 123 (193)
T ss_pred EECCHHHhHhhCCCCCccEEehHhHH----------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh
Confidence 33446667777777788888776321 12233445677888889988899999998888776665
Q ss_pred cCCCCcccccccCCCcch-------HHHHHHHHhcCceEEEecCCCCC
Q 021241 172 ACVPPAVNQVECHPSWQQ-------QKLREFCKSKGVHLSGYSPLGSP 212 (315)
Q Consensus 172 ~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~via~~pl~~g 212 (315)
.+-.|..-+.+|+-++.. .+..++|++.|+.|+-..++.++
T Consensus 124 ~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 124 RGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred cCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 566788888898776643 68899999999999999999664
No 20
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.66 E-value=7.5 Score=36.78 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC--C
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ--I 105 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg--~ 105 (315)
+.....++++|++.|++++|||.+.-....+.... .+..+.+..-+ .++|.-..--.....+.+. +
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a---------~~Agit~v~~~---G~dPGi~nv~a~~a~~~~~~~i 145 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA---------KKAGITAVLGC---GFDPGITNVLAAYAAKELFDEI 145 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH---------HHcCeEEEccc---CcCcchHHHHHHHHHHHhhccc
Confidence 34456889999999999999997765432222222 23445555554 3445444444444445554 8
Q ss_pred CccceEeecCCCCc
Q 021241 106 DYLDLYLMHWPVKM 119 (315)
Q Consensus 106 d~iDl~~lH~p~~~ 119 (315)
++||+|..+-|...
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988765
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=81.81 E-value=19 Score=32.04 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHcCCeeEEee-ccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCCCCCCCCCC
Q 021241 143 MEALYDSGKARAIGV-SNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGSPGTTWIKS 219 (315)
Q Consensus 143 L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~gg~~~~~~ 219 (315)
|.+-.++|+.- +|+ .......+.+++..++.++.++=.+-++++.+ ..++..|+..|+..+.+-|-..
T Consensus 10 lk~~l~~g~~~-~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQVQ-IGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 45555567753 443 34444566667777788888888888888776 5788899999999998887732
Q ss_pred ccCCChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCC
Q 021241 220 DVLKHPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDW 272 (315)
Q Consensus 220 ~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 272 (315)
...+..+|..| ..++|-..|.++.++.+++...
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12356666666 3566777777777777665554
No 22
>PRK08609 hypothetical protein; Provisional
Probab=81.12 E-value=63 Score=32.36 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHccCCEEeCCCCcC--------CHHHHHHHH---HhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHH
Q 021241 29 GVVGNAVAAAIKAGYRHIDCAQIYG--------NEKEIGLVL---KKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALD 97 (315)
Q Consensus 29 ~~~~~~l~~Al~~Gi~~~DTA~~Yg--------~E~~lG~al---~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e 97 (315)
....++++.|.+.|+.+|=.++++. +...+-..+ +.. ++. ...=+|+...=+. +.++....-.+
T Consensus 349 ~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~-~~~i~Il~GiEv~---i~~~g~~d~~~ 423 (570)
T PRK08609 349 FSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEK-YPEIDILSGIEMD---ILPDGSLDYDD 423 (570)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHh-cCCCeEEEEEEEe---ecCCcchhhcH
Confidence 3467799999999999987777752 222222222 211 100 1111233333322 22222233334
Q ss_pred HHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc------CC--HhHHHHHH
Q 021241 98 RTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN------FS--TKKLGDLL 169 (315)
Q Consensus 98 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~------~~--~~~l~~~~ 169 (315)
..|+. .||+ +.-+|++.. .+..++++.+.++.+.|.+.-||=-. +. ...+++++
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~---------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~ 485 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS---------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLI 485 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC---------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHH
Confidence 45554 4666 777897532 34577888999999988877665322 11 23344444
Q ss_pred HHcCCCCcccccccCCCc--chHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHH
Q 021241 170 EVACVPPAVNQVECHPSW--QQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQV 241 (315)
Q Consensus 170 ~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~ 241 (315)
+.+...=.++|++-+++. ....++..|.+.|+.+ +.++=+.. ...+-..+.-..+|++-+.++.++
T Consensus 486 ~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i-~igSDAH~-----~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 486 ELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKL-AINTDAHH-----TEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEE-EEECCCCC-----hhhhCcHHHHHHHHHHcCCCHHHc
Confidence 442111245566655443 2367889999999864 33333321 012223345566777777666553
No 23
>PRK13796 GTPase YqeH; Provisional
Probab=78.52 E-value=34 Score=32.10 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHHcc---CCEEeCCCCcCC-HHHHHHHHHhhhhcCCCCCCceEEEeccCCC--CCCCCcHHHHHHHH
Q 021241 26 SDPGVVGNAVAAAIKAG---YRHIDCAQIYGN-EKEIGLVLKKFFEDAVVKREDLWITSKLWNA--YHEPEDVPEALDRT 99 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~G---i~~~DTA~~Yg~-E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~--~~~~~~i~~~~e~S 99 (315)
.+.++..++++..-+.- +-.+|..+.-++ ...+.+... .+.-++|.+|.--. ....+.+.+.++..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~--------~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG--------NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC--------CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 34556677777766554 556787665543 222222221 35668899997221 11233455566666
Q ss_pred HHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHH
Q 021241 100 LRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDL 168 (315)
Q Consensus 100 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 168 (315)
.+.+|....|++.+..-.. ..+.++++.+.+..+.+.+--+|.+|..-..+--.
T Consensus 126 ~k~~g~~~~~v~~vSAk~g---------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKG---------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred HHhcCCCcCcEEEEECCCC---------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 6777765557776653221 55788899998888788899999999997766443
No 24
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=77.59 E-value=35 Score=30.62 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=69.9
Q ss_pred HHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCCCCCCCCCCc
Q 021241 143 MEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGSPGTTWIKSD 220 (315)
Q Consensus 143 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~gg~~~~~~~ 220 (315)
|.+..++|+.-.-.........+.+++..++.++.++=.+-++++.+ ..++..++..|+..+.+-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 45555667754333344444566666677778888888888888776 4688889999998888877522
Q ss_pred cCCChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCC
Q 021241 221 VLKHPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDW 272 (315)
Q Consensus 221 ~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 272 (315)
...+..+|..| ..++|-..|.++.++.+++...
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 13456777777 3567777888888877777654
No 25
>PRK08392 hypothetical protein; Provisional
Probab=76.15 E-value=49 Score=28.34 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHccCCEEeCCCCcC--CHHHHHHHHHhhhhcCCCCCCceEE--EeccCCCCCCCCcHHHHHHHHHHHcCC
Q 021241 30 VVGNAVAAAIKAGYRHIDCAQIYG--NEKEIGLVLKKFFEDAVVKREDLWI--TSKLWNAYHEPEDVPEALDRTLRDLQI 105 (315)
Q Consensus 30 ~~~~~l~~Al~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i--~tK~~~~~~~~~~i~~~~e~SL~rLg~ 105 (315)
...++++.|.+.|++.|=.+++.- ...-+...++..-+.. .+.++-| ..=+.. .++. ....++.+++ .
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~--~~~~i~il~GiE~~~---~~~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG--EESEIVVLAGIEANI---TPNG-VDITDDFAKK--L 86 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh--hccCceEEEeEEeee---cCCc-chhHHHHHhh--C
Confidence 467889999999999986666542 1112222232211000 1223322 222211 1122 2334444553 4
Q ss_pred CccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc----C----CHhHHHHHHHHc---CC
Q 021241 106 DYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN----F----STKKLGDLLEVA---CV 174 (315)
Q Consensus 106 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~----~~~~l~~~~~~~---~~ 174 (315)
||+ +.-+|..... ....+.++.+.++.+.|.+.-+|=-. + ..+.++++++.+ +.
T Consensus 87 D~v-I~SvH~~~~~--------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~ 151 (215)
T PRK08392 87 DYV-IASVHEWFGR--------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGK 151 (215)
T ss_pred CEE-EEEeecCcCC--------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCC
Confidence 665 6677843211 23467778888888888765554211 1 113444444433 22
Q ss_pred CCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHH
Q 021241 175 PPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQV 241 (315)
Q Consensus 175 ~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~ 241 (315)
.+.+| -....+...+++.|++.|+.++. +.=+.. ...+-..+...+++++.|.++.++
T Consensus 152 ~lEiN---t~~~~p~~~~l~~~~~~G~~~~i-gSDAH~-----~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 152 AFEIS---SRYRVPDLEFIRECIKRGIKLTF-ASDAHR-----PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred EEEEe---CCCCCCCHHHHHHHHHcCCEEEE-eCCCCC-----hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 22233 12223456789999999977544 322221 011111245567777777776653
No 26
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=75.53 E-value=11 Score=33.22 Aligned_cols=118 Identities=10% Similarity=0.058 Sum_probs=61.6
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcCCHHH--------------------HHHHHHhhhhcCCCCCCceEEEeccCCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKE--------------------IGLVLKKFFEDAVVKREDLWITSKLWNA 85 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~--------------------lG~al~~~~~~~~~~R~~v~i~tK~~~~ 85 (315)
++.++..++.+++-+.||.+|=|.-.-.+-.. +=+.+++ ....++|+|-.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-------tgkPvIlSTG~--- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK-------TGKPVILSTGM--- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-------T-S-EEEE-TT---
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH-------hCCcEEEECCC---
Confidence 67788999999999999999977643221111 1112222 24557777765
Q ss_pred CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHH-HHHHHHHHHHcCCeeEEeeccCCHhH
Q 021241 86 YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPS-TWKAMEALYDSGKARAIGVSNFSTKK 164 (315)
Q Consensus 86 ~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (315)
.+.+.|.++++.-.++ ..-++.++|....+. .+.++ -+..|..|++.=- --||.|.|+...
T Consensus 123 -stl~EI~~Av~~~~~~---~~~~l~llHC~s~YP-------------~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 123 -STLEEIERAVEVLREA---GNEDLVLLHCVSSYP-------------TPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp ---HHHHHHHHHHHHHH---CT--EEEEEE-SSSS---------------GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred -CCHHHHHHHHHHHHhc---CCCCEEEEecCCCCC-------------CChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 2334455555544333 347999999876542 22322 3566777775422 577999999865
Q ss_pred HHHHHHH
Q 021241 165 LGDLLEV 171 (315)
Q Consensus 165 l~~~~~~ 171 (315)
..-+...
T Consensus 185 ~~~~~Av 191 (241)
T PF03102_consen 185 EAPIAAV 191 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 27
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=75.15 E-value=34 Score=30.26 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=65.8
Q ss_pred HHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCCCCCCCCCCccC
Q 021241 145 ALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVL 222 (315)
Q Consensus 145 ~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~ 222 (315)
+-.++|+.-.-..++.....+.+++..++.++.++=.+-++++.+ ..++..++..|+..+.+-|-..
T Consensus 5 ~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~----------- 73 (249)
T TIGR03239 5 QDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE----------- 73 (249)
T ss_pred HHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-----------
Confidence 334456643222344444566666677778888888888888766 5688888999999888887732
Q ss_pred CChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCC
Q 021241 223 KHPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDW 272 (315)
Q Consensus 223 ~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 272 (315)
...++.+|..| ..++|-.+|.++.++.+++...
T Consensus 74 -----------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 -----------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred -----------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12355666666 3566777777777777765544
No 28
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=74.74 E-value=49 Score=31.24 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEeec---cCCHhHHHHHHHHcCC-C
Q 021241 101 RDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GKARAIGVS---NFSTKKLGDLLEVACV-P 175 (315)
Q Consensus 101 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~~~~-~ 175 (315)
+.+| .|++.||.-.....+. ..+.++..++.++..+. +.=--|+=| ..+++.+++.++.++. +
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~---------d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~k 217 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLD---------DKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGER 217 (389)
T ss_pred HHhC---CCEEEEEecCCCcccc---------ccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCC
Confidence 4555 6888888644321100 04456677777776443 332233333 6788999999988754 5
Q ss_pred CcccccccCCCcchHHHHHHHHhcCceEEEecCCCC
Q 021241 176 PAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 176 ~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~ 211 (315)
|.++-..... .-..+.+.|+++|..+++++|..-
T Consensus 218 pLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 218 CLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred cEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 6554433221 225789999999999999999843
No 29
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=73.27 E-value=2.6 Score=39.14 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCC-c-chHHHHHHHHhcCce
Q 021241 145 ALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPS-W-QQQKLREFCKSKGVH 202 (315)
Q Consensus 145 ~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~-~-~~~~~~~~~~~~gi~ 202 (315)
..-=-|+|||+||--++++.+.++..... .-++.+.+..++ + .+..+++.+++.||.
T Consensus 259 SeTCVGriRYlGVlLYDaDrv~eaAs~~~-e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 259 SETCVGRIRYLGVLLYDADRVEEAASTEN-EKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhhhhcceeeeeeeeecHHHHHHhhcCcc-HHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 33445999999999999999988765433 223443333322 2 235677777777775
No 30
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=73.01 E-value=23 Score=32.56 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHcCCCccceEeecC-CCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE-EeeccC---CHhHHHHHHHHc
Q 021241 98 RTLRDLQIDYLDLYLMHW-PVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARA-IGVSNF---STKKLGDLLEVA 172 (315)
Q Consensus 98 ~SL~rLg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~ 172 (315)
+.-+.+|.|+||+-+.-. |+..+ ...++....++...+.=.+-- |..|.. +++.+++.++.+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d-------------~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~ 149 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKD-------------KSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAA 149 (319)
T ss_pred HHHHHhCCCEEEEECCCCCccccc-------------chHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHh
Confidence 444688999888865432 21111 233444444444433222222 665633 788999999887
Q ss_pred CC-CCcccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 173 CV-PPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 173 ~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
+. ++.++-+... .-..+.+.|+++|..+++.+|.
T Consensus 150 ~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 150 EGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred CCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHH
Confidence 63 3544443311 2267999999999999999876
No 31
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=72.36 E-value=98 Score=30.03 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=63.9
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCC-CCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCC----ccceEeecCCCCccCCCC
Q 021241 50 QIYGNEKEIGLVLKKFFEDAVVK-REDLWITSKLWNAYHEPEDVPEALDRTLRDLQID----YLDLYLMHWPVKMKKGSV 124 (315)
Q Consensus 50 ~~Yg~E~~lG~al~~~~~~~~~~-R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d----~iDl~~lH~p~~~~~~~~ 124 (315)
-.||.|+.|-++|++..+.. + .+-++|.|-+.. ..--+++..-+++.-++++-+ .+.++.+|.|....
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~~-eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G---- 138 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRY--PDLRVIPIITTCST-EIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKG---- 138 (454)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchH-hhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC----
Confidence 35888888889998864432 2 234677777633 333456666665544444222 47888999887642
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH--------cCCeeEEeecc--CCHhHHHHHHHHcCCCC
Q 021241 125 GFKPENLDKPDIPSTWKAMEALYD--------SGKARAIGVSN--FSTKKLGDLLEVACVPP 176 (315)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~L~~l~~--------~G~ir~iGvs~--~~~~~l~~~~~~~~~~~ 176 (315)
........+++.+++ +++|--||-.+ -+.+.+.++++..++++
T Consensus 139 ---------s~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 139 ---------SMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred ---------CHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 112223333333332 46688887433 33467777887766543
No 32
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.76 E-value=25 Score=30.90 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~ 170 (315)
-...+-+.|.++|+++|.+-..-.+... ....+.++.++.+++.+ .++...++......++.+.+
T Consensus 20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~~--------------p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~ 85 (265)
T cd03174 20 DKLEIAEALDEAGVDSIEVGSGASPKAV--------------PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE 85 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcCcccc--------------ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh
Confidence 3445556688999999998765433211 11245678888899888 67777777666667777665
Q ss_pred HcCCCCcccccccCCCc--------c--------hHHHHHHHHhcCceEEEec
Q 021241 171 VACVPPAVNQVECHPSW--------Q--------QQKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 171 ~~~~~~~~~q~~~~~~~--------~--------~~~~~~~~~~~gi~via~~ 207 (315)
.. .+.+++.+..-+ + -.+.++++++.|+.+...-
T Consensus 86 ~g---~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 86 AG---VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 42 355555554331 1 1357888999999877755
No 33
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.53 E-value=49 Score=29.53 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCC---HhHHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFS---TKKLGD 167 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~ 167 (315)
.-+..+-+.|.++|+|+|++-+.........+... ....+.++.+.++.+ +..+..+++... .+.+..
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSA--------FCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCcc--------CCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHH
Confidence 34566677799999999999876532211111100 223556666665543 346666666544 344444
Q ss_pred HHHHcCCCCccccccc--CCCcchHHHHHHHHhcCceEEEe
Q 021241 168 LLEVACVPPAVNQVEC--HPSWQQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~--~~~~~~~~~~~~~~~~gi~via~ 206 (315)
+.+ . .++.+.+.+ +.+..-.+.+++++++|+.+...
T Consensus 91 a~~-~--gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 91 ASG-S--VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred Hhc-C--CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 332 2 234433332 33323367889999999876643
No 34
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=70.53 E-value=59 Score=30.00 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=70.6
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcCC---------------------HHHHHHHHHhhhhcCCCCCCceEEEeccCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYGN---------------------EKEIGLVLKKFFEDAVVKREDLWITSKLWN 84 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~---------------------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~ 84 (315)
.+.+.-.++.+.|-+.|+-+|-|--.+.+ ..+|-. +.. .-..+.++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~-iA~-------~~kPiIlSTGm-- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKY-IAK-------KGKPIILSTGM-- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHH-HHh-------cCCCEEEEccc--
Confidence 45566778899999999999876544332 222211 111 12467777765
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHH-HHHHHHHHHcCCeeEEeeccCCHh
Q 021241 85 AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPST-WKAMEALYDSGKARAIGVSNFSTK 163 (315)
Q Consensus 85 ~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~G~ir~iGvs~~~~~ 163 (315)
.+-+.+.++++...++ | ..|+.+||....+. .+.+++ +.+|..|.+.= ---||+|.|+..
T Consensus 157 --a~~~ei~~av~~~r~~-g--~~~i~LLhC~s~YP-------------ap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g 217 (347)
T COG2089 157 --ATIEEIEEAVAILREN-G--NPDIALLHCTSAYP-------------APFEDVNLKAIPKLAEAF-NAIVGLSDHTLG 217 (347)
T ss_pred --ccHHHHHHHHHHHHhc-C--CCCeEEEEecCCCC-------------CCHHHhhHHHHHHHHHHh-CCccccccCccc
Confidence 3345666666654443 3 23999999866542 444443 45555555442 457999999987
Q ss_pred HHHHHHHH
Q 021241 164 KLGDLLEV 171 (315)
Q Consensus 164 ~l~~~~~~ 171 (315)
.+.-+...
T Consensus 218 ~~a~l~Av 225 (347)
T COG2089 218 ILAPLAAV 225 (347)
T ss_pred hhHHHHHH
Confidence 55544443
No 35
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.16 E-value=87 Score=28.51 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=88.7
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcCCHHH--HHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYGNEKE--IGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ 104 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~--lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg 104 (315)
++++..+.++.+++.|++.|+.--.-..+.. .=+++++. +. ++-|.-++.. ..+.+. -..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-----~g--~~~l~vD~n~-~~~~~~-A~~~~~~l~~~- 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-----AP--DARLRVDANQ-GWTPEE-AVELLRELAEL- 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-----CC--CCeEEEeCCC-CcCHHH-HHHHHHHHHhc-
Confidence 4566777788888999999987421111221 11334432 22 5566666632 233322 12233344444
Q ss_pred CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCccccccc
Q 021241 105 IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVEC 183 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~ 183 (315)
++.++-.|... +-++.+.+|++...|. ..|=+-++...+.++++... .+++|+..
T Consensus 204 ----~l~~iEeP~~~------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~--~d~v~~~~ 259 (316)
T cd03319 204 ----GVELIEQPVPA------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGA--YDGINIKL 259 (316)
T ss_pred ----CCCEEECCCCC------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCC--CCEEEEec
Confidence 44445544321 2256677888876665 34455578888888887644 47788776
Q ss_pred CCCc---chHHHHHHHHhcCceEEEecCC
Q 021241 184 HPSW---QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 184 ~~~~---~~~~~~~~~~~~gi~via~~pl 209 (315)
+..- ....+..+|+++|+.++.++-+
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 5532 2267899999999999998666
No 36
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=68.53 E-value=1.1e+02 Score=29.02 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHccCCEEeCCCCcC-------CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHH
Q 021241 29 GVVGNAVAAAIKAGYRHIDCAQIYG-------NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLR 101 (315)
Q Consensus 29 ~~~~~~l~~Al~~Gi~~~DTA~~Yg-------~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~ 101 (315)
.++.+++..|++.| ..+.|+ +.+.+.+.+.+.+ .+++..++||+++-+ .+++|-.+.
T Consensus 81 ~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l-~~kl~a~DV~ltsGC----------~qAIe~~i~ 144 (447)
T KOG0259|consen 81 QEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDL-PNKLTADDVVLTSGC----------SQAIELAIS 144 (447)
T ss_pred HHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCC-CCccCcCceEEeccc----------hHHHHHHHH
Confidence 56788888899888 356676 3566666654432 244678999998875 234555555
Q ss_pred HcCCCccceE
Q 021241 102 DLQIDYLDLY 111 (315)
Q Consensus 102 rLg~d~iDl~ 111 (315)
.|-.-.-.++
T Consensus 145 ~LA~p~aNIL 154 (447)
T KOG0259|consen 145 SLANPGANIL 154 (447)
T ss_pred HhcCCCCcee
Confidence 5543333444
No 37
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.43 E-value=59 Score=26.51 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcc-------hHHHHHHHHhcCceEEEec
Q 021241 135 DIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQ-------QQKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 135 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~~~~~~~~~gi~via~~ 207 (315)
.-+++++..-+=-+++-|++|=|.+.+.....++++...-...++-+-++..+. +.++.+..+++|..|..-|
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~s 90 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQS 90 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeeh
Confidence 346667666666677889999999888888877777765434444444444433 2678999999999998866
Q ss_pred CCCCCCCCCCCCccCCChHHHHHHHHh-CCCHHHH---HHHHHHhcC
Q 021241 208 PLGSPGTTWIKSDVLKHPVVNMVAEKL-GKTPAQV---CLRWGLQMG 250 (315)
Q Consensus 208 pl~~gg~~~~~~~~~~~~~l~~la~~~-~~s~aq~---al~~~l~~~ 250 (315)
-...|. =+.+.+++ |.+|.++ .|| ...+|
T Consensus 91 HalSg~-------------eRsis~kfGG~~p~eiiAetLR-~fg~G 123 (186)
T COG1751 91 HALSGV-------------ERSISRKFGGYSPLEIIAETLR-MFGQG 123 (186)
T ss_pred hhhhcc-------------hhhhhhhcCCcchHHHHHHHHH-HhcCC
Confidence 554431 13455666 4677665 355 44566
No 38
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=68.06 E-value=40 Score=31.74 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=66.1
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---eeEEeec--cCCHhHHHHHHHHcC-C------CCc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GK---ARAIGVS--NFSTKKLGDLLEVAC-V------PPA 177 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~------~~~ 177 (315)
+-||.|+...+......+.. .+++++++++.+..++ |+ +-|+=+. |.+.+++.++.+..+ . +..
T Consensus 232 iSLHA~~~e~R~~lmPin~~---ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~ 308 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRR---YPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVH 308 (371)
T ss_pred EEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceE
Confidence 57899886544332222222 6899999999988654 32 2233333 677788888777664 3 468
Q ss_pred ccccccCCCcch----------HHHHHHHHhcCceEEEecCCCC
Q 021241 178 VNQVECHPSWQQ----------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 178 ~~q~~~~~~~~~----------~~~~~~~~~~gi~via~~pl~~ 211 (315)
+|-++||+.... ....+.++++||.+..+...|.
T Consensus 309 VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 309 VNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 889999986421 3467778899999999988854
No 39
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=66.87 E-value=1.1e+02 Score=28.36 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=87.8
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcCC------H--HHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHH
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYGN------E--KEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDR 98 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~------E--~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~ 98 (315)
+.++..+..+.+.+.|++.|-.--..+. + ..+=+++++.+ .+++.|...... ..+.+ ...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~------g~~~~l~vDaN~-~~~~~----~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAV------GPDVDLMVDANG-RWDLA----EAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhh------CCCCEEEEECCC-CCCHH----HHHH
Confidence 4566777778888999998875322221 1 11113444431 235556556522 22222 2223
Q ss_pred HHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCc
Q 021241 99 TLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPA 177 (315)
Q Consensus 99 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~ 177 (315)
-+++|. ..++.+++.|.+. +-++.+..|++.-.+. ..|=|-++.+.+.++++... .+
T Consensus 208 ~~~~l~--~~~i~~iEqP~~~------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~d 265 (357)
T cd03316 208 LARALE--EYDLFWFEEPVPP------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA--VD 265 (357)
T ss_pred HHHHhC--ccCCCeEcCCCCc------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC--CC
Confidence 334442 2356667766432 2356677787775554 44455678889998887643 47
Q ss_pred ccccccCCCc---chHHHHHHHHhcCceEEEecC
Q 021241 178 VNQVECHPSW---QQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 178 ~~q~~~~~~~---~~~~~~~~~~~~gi~via~~p 208 (315)
++|+.....- +...+...|+++|+.++.++.
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 7777755432 336789999999999887664
No 40
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=66.48 E-value=92 Score=28.63 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcCCHHH----HHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHH
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKE----IGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLR 101 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~----lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~ 101 (315)
.+.++..++++.+.+.|+..|--+ |.|.. +-+.++..-+.+ ...++.|+|-.. .+. ..-+.|+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~--~l~~i~itTNG~-------ll~-~~~~~L~ 111 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP--GLEELSLTTNGS-------RLA-RFAAELA 111 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC--CCceEEEEeChh-------HHH-HHHHHHH
Confidence 345678888888889999877654 32222 222332220001 122456665531 122 2445677
Q ss_pred HcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEeeccCCHhHHHHHHHH
Q 021241 102 DLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK----ARAIGVSNFSTKKLGDLLEV 171 (315)
Q Consensus 102 rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~ 171 (315)
..|++++-+ -|+..++...... . ....++.+++.++.+++.|. |..+.+...+.+++.++++.
T Consensus 112 ~aGl~~v~I-SlDs~~~e~~~~i--~----~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~ 178 (329)
T PRK13361 112 DAGLKRLNI-SLDTLRPELFAAL--T----RNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEF 178 (329)
T ss_pred HcCCCeEEE-EeccCCHHHhhhh--c----CCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHH
Confidence 778777653 4554432110000 0 01457889999999988874 22333334455555554444
No 41
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=64.66 E-value=1.3e+02 Score=28.68 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=63.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC-CCccceEeecCCCCccCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ-IDYLDLYLMHWPVKMKKGSVGFKPE 129 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-++|++..+.. +.+-++|.|-+.. ..--+++..-+++.-++.. --.+.++.+|.|.......
T Consensus 62 V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~-~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~------ 132 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLT-ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHE------ 132 (428)
T ss_pred eECcHHHHHHHHHHHHHhc--CCCEEEEECCcch-hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHH------
Confidence 4788888889998875442 3444666666533 3334455555544433321 0236677888776542110
Q ss_pred CCCCCCHHHHHHHHHHH-------HHcCCeeEEeeccC---CHhHHHHHHHHcCCCCc
Q 021241 130 NLDKPDIPSTWKAMEAL-------YDSGKARAIGVSNF---STKKLGDLLEVACVPPA 177 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~ 177 (315)
.....++++|-+. ++.++|--||-++. +.+.+.++++..++++.
T Consensus 133 ----~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~ 186 (428)
T cd01965 133 ----TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPI 186 (428)
T ss_pred ----HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEE
Confidence 1223333333321 23467888876654 35788888888775443
No 42
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=64.36 E-value=36 Score=30.84 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEV 171 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (315)
-+..+-+.|.++|+++|++-.++.|... ....+.++.+..+.+...++...++ .+...++++++.
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~--------------p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~ 91 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWV--------------PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA 91 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccc--------------cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc
Confidence 4556777799999999999755545321 1112335666666554446665655 477888888765
Q ss_pred cCCCCcccccc--cCCC-------cch-------HHHHHHHHhcCceEEE
Q 021241 172 ACVPPAVNQVE--CHPS-------WQQ-------QKLREFCKSKGVHLSG 205 (315)
Q Consensus 172 ~~~~~~~~q~~--~~~~-------~~~-------~~~~~~~~~~gi~via 205 (315)
. . +.+.+. .|.. ... .+.+++++++|+.+.+
T Consensus 92 g-~--~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 92 G-A--DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred C-C--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2 2 222222 2211 111 3588999999998863
No 43
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=62.28 E-value=55 Score=31.36 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHHHHcCCC-----CcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 138 STWKAMEALYDSG-KARAIGVSNFSTKKLGDLLEVACVP-----PAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 138 ~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~-----~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
-+....+.++++| .++++.|.+-....++++.+..+.+ ++.+..+...+.+-+++...|++.||.+..
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHV 216 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEe
Confidence 3456667777788 4678888865555555555543321 233333334444557888888888887665
No 44
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=61.41 E-value=28 Score=29.90 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec-cCCHhHHHHHHHHcCCCCc
Q 021241 99 TLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS-NFSTKKLGDLLEVACVPPA 177 (315)
Q Consensus 99 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~ 177 (315)
....+|.|++=+++...-.+. .+.+.. ..+.+.. .+.++.+||. |-+++.+.++++.. .++
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~--------------V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~--~~d 77 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRH--------------QTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNT--SIN 77 (207)
T ss_pred HHHHcCCCEEEEecCCCCccc--------------CCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhC--CCC
Confidence 446799999999754421111 333333 3333322 3568889996 78888888887764 568
Q ss_pred cccccc
Q 021241 178 VNQVEC 183 (315)
Q Consensus 178 ~~q~~~ 183 (315)
++|++-
T Consensus 78 ~vQLHG 83 (207)
T PRK13958 78 TIQLHG 83 (207)
T ss_pred EEEECC
Confidence 999874
No 45
>PLN02489 homocysteine S-methyltransferase
Probab=61.22 E-value=1.4e+02 Score=27.69 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=93.3
Q ss_pred CceEEEeccCCCC----------------CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHH
Q 021241 74 EDLWITSKLWNAY----------------HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIP 137 (315)
Q Consensus 74 ~~v~i~tK~~~~~----------------~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 137 (315)
.+++|+--+++.. .+.+.+.+.....++.|--..+|++.+-.. ....
T Consensus 131 ~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~-----------------~~l~ 193 (335)
T PLN02489 131 RPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI-----------------PNKL 193 (335)
T ss_pred CCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-----------------CChH
Confidence 4577777775422 233566666666677764466999999753 3457
Q ss_pred HHHHHHHHHHHcC--CeeEEeeccCCH------hHHHHHHHHcC--CCCcccccccCCCcchHHHHHHHHhc-CceEEEe
Q 021241 138 STWKAMEALYDSG--KARAIGVSNFST------KKLGDLLEVAC--VPPAVNQVECHPSWQQQKLREFCKSK-GVHLSGY 206 (315)
Q Consensus 138 ~~~~~L~~l~~~G--~ir~iGvs~~~~------~~l~~~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~-gi~via~ 206 (315)
|+..+++.+++.+ +--.+.++..+. ..+.++++... ..++.+-+++.-...-..+++..+.. ++.+++|
T Consensus 194 E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vy 273 (335)
T PLN02489 194 EAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVY 273 (335)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEE
Confidence 7777777777664 555566653221 22333333321 23556666664221114555555544 6777776
Q ss_pred cCCCCCCCCCCCCccCCChHHHHHHHHhCCC---HHHHHHHHHHhcCCeeecCC--CCHHHHHHhhccCC
Q 021241 207 SPLGSPGTTWIKSDVLKHPVVNMVAEKLGKT---PAQVCLRWGLQMGNSLLPKS--TNEVRMKENLDVFD 271 (315)
Q Consensus 207 ~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s---~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 271 (315)
--- |....... . .....++.+ .++.+.+|. ..|..+|=|. ++|+||++..+.++
T Consensus 274 PNa---G~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~-~~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 274 PNS---GETYDGEA----K---EWVESTGVSDEDFVSYVNKWR-DAGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred CCC---CCCCCCcc----C---cccCCCCCCHHHHHHHHHHHH-HCCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 443 22211100 0 000012233 456677886 4577777666 89999998776654
No 46
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=60.61 E-value=1.1e+02 Score=26.99 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=63.1
Q ss_pred HHHHHHcCCe-eEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCCCCCCCCCC
Q 021241 143 MEALYDSGKA-RAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGSPGTTWIKS 219 (315)
Q Consensus 143 L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~gg~~~~~~ 219 (315)
|.+..++|+. -...+...++..++ .+..++.++.++=.+-++.+.+ ..++..++..|..++.+-|-..
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e-~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~-------- 73 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAE-ICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD-------- 73 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHH-HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC--------
Confidence 3444556774 23334444444444 4455667777777777776544 3467777778888887765521
Q ss_pred ccCCChHHHHHHHHhCCCHHHHHHHHHHhcC--CeeecCCCCHHHHHHhhccCCC
Q 021241 220 DVLKHPVVNMVAEKLGKTPAQVCLRWGLQMG--NSLLPKSTNEVRMKENLDVFDW 272 (315)
Q Consensus 220 ~~~~~~~l~~la~~~~~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 272 (315)
+ .-++.+|..| ..++|-..+++++++.+++...
T Consensus 74 ------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456777777 3667888888888887776653
No 47
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.73 E-value=48 Score=30.95 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (315)
.-+..+-+.|.++|+++|++-..-.|...... .+..++++.+.+ ...++..+++ .+...++.+++
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqm-----------ad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~ 132 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVPQL-----------ADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIA 132 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCccccccc-----------ccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHH
Confidence 45667778899999999999754444321100 223445555543 2335555554 47888998887
Q ss_pred HcCCCCcccccc--cCCCc-------ch-------HHHHHHHHhcCceEEE
Q 021241 171 VACVPPAVNQVE--CHPSW-------QQ-------QKLREFCKSKGVHLSG 205 (315)
Q Consensus 171 ~~~~~~~~~q~~--~~~~~-------~~-------~~~~~~~~~~gi~via 205 (315)
.. . +.+.+. .|..+ .. .+++++++++|+.+.+
T Consensus 133 ~g-~--~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 133 AG-A--KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred cC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 53 2 222222 22111 11 3688999999999853
No 48
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=58.86 E-value=70 Score=28.91 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCC------cccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCC
Q 021241 141 KAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPP------AVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGT 214 (315)
Q Consensus 141 ~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~------~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~ 214 (315)
+.++.|....++..+-=++.+.+.+..+.+...-++ ..+.+-+--..|+..+.+.+++-++-++.-+.=
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~n----- 219 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKN----- 219 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCC-----
Confidence 345555445555555556677666666555432111 112222222234567888999988877762222
Q ss_pred CCCCCccCCChHHHHHHHHhCC------CHHHHHHHHHHhcC-CeeecCCCCHHHHHHhh
Q 021241 215 TWIKSDVLKHPVVNMVAEKLGK------TPAQVCLRWGLQMG-NSLLPKSTNEVRMKENL 267 (315)
Q Consensus 215 ~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~enl 267 (315)
--....|.++|+++|. ++.++-..|.-... ..+..|+|+|+.+-+.+
T Consensus 220 ------SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 220 ------SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred ------CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 1224689999999883 78999999998765 67889999999876543
No 49
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=58.07 E-value=75 Score=29.00 Aligned_cols=116 Identities=10% Similarity=0.107 Sum_probs=72.0
Q ss_pred HHHHHH--HHcCCeeEEeeccCCHhHHHHHHHHcCCCC-cccccccCCCc-----chHHHHHHHHhcCceEEEecCCCCC
Q 021241 141 KAMEAL--YDSGKARAIGVSNFSTKKLGDLLEVACVPP-AVNQVECHPSW-----QQQKLREFCKSKGVHLSGYSPLGSP 212 (315)
Q Consensus 141 ~~L~~l--~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~-~~~q~~~~~~~-----~~~~~~~~~~~~gi~via~~pl~~g 212 (315)
+.++.| ....++..+-=++.+.+.+.++.+...-++ .+.-..+|-.+ |+..+.+++++.+.-++.-++=
T Consensus 145 ~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~--- 221 (298)
T PRK01045 145 EDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKN--- 221 (298)
T ss_pred HHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCC---
Confidence 334444 223556555556677777666665542221 11111122222 3467888899888887762222
Q ss_pred CCCCCCCccCCChHHHHHHHHhCC------CHHHHHHHHHHhcC-CeeecCCCCHHHHHHhh
Q 021241 213 GTTWIKSDVLKHPVVNMVAEKLGK------TPAQVCLRWGLQMG-NSLLPKSTNEVRMKENL 267 (315)
Q Consensus 213 g~~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~enl 267 (315)
--....|.++|++++. ++.++-..|..... ..+..|+|+|+.+-+.+
T Consensus 222 --------SsNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 222 --------SSNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred --------CccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 1223689999999873 78999999997655 67889999999765544
No 50
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.68 E-value=1.6e+02 Score=27.30 Aligned_cols=36 Identities=22% Similarity=0.127 Sum_probs=27.4
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCC
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCA 49 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA 49 (315)
+|+.|..... |+++.++..++++..-++||..|+.+
T Consensus 10 TLRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 10 TLRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 4555655433 45677889999999999999999994
No 51
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=57.67 E-value=62 Score=28.87 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=56.1
Q ss_pred HcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCccccc
Q 021241 102 DLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQV 181 (315)
Q Consensus 102 rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~ 181 (315)
.-|.|.||+=.--.+ . ...+.+...++.+++.-.+ -|-|-+++++.++++++...-.+.+|-+
T Consensus 36 ~~GAdiIDVg~~~~~--~--------------eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 36 EAGADYLDVNAGTAV--E--------------EEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred HCCCCEEEECCCCCc--h--------------hHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 568899998532100 0 2234455566666554222 4788899999999999874334444444
Q ss_pred ccCCCcchHHHHHHHHhcCceEEEecC
Q 021241 182 ECHPSWQQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~gi~via~~p 208 (315)
.... .+...+++.++++|..++...-
T Consensus 99 s~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 99 SAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 3221 2345789999999999998653
No 52
>PRK07945 hypothetical protein; Provisional
Probab=56.78 E-value=1.7e+02 Score=27.17 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcC--------CHHHHHHHHHhh--hhcCCCCCCceEEEeccCCCCCCCCcHHHHHH
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYG--------NEKEIGLVLKKF--FEDAVVKREDLWITSKLWNAYHEPEDVPEALD 97 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg--------~E~~lG~al~~~--~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e 97 (315)
.....+++++|.+.|+..+=.+++.. +...+-..+... +++. -++ +-|-.=+= .+.-++.-....+
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k--y~~-I~Il~GiE-~d~~~~g~~~~~~ 185 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE--LAP-FRILTGIE-VDILDDGSLDQEP 185 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh--cCC-ceEEEEeE-ecccCCCCcchhH
Confidence 34578999999999999875555521 122222222221 0000 122 33322220 0111112122233
Q ss_pred HHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEe
Q 021241 98 RTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIG 156 (315)
Q Consensus 98 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 156 (315)
+.|+. .||+ +.-+|+... .+..+..+.|.++.+.|.+.-+|
T Consensus 186 ~~l~~--~D~v-IgSvH~~~~---------------~~~~~~~~~l~~ai~~~~~dvlg 226 (335)
T PRK07945 186 ELLDR--LDVV-VASVHSKLR---------------MDAAAMTRRMLAAVANPHTDVLG 226 (335)
T ss_pred HHHHh--CCEE-EEEeecCCC---------------CCHHHHHHHHHHHhcCCCCeEEe
Confidence 34443 4666 667897532 22355678888888888877777
No 53
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=56.61 E-value=1.5e+02 Score=26.79 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=59.9
Q ss_pred HHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc------CCHhHHHHHHHHc
Q 021241 99 TLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN------FSTKKLGDLLEVA 172 (315)
Q Consensus 99 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~------~~~~~l~~~~~~~ 172 (315)
++++..-+..|++.+..|.... - ..+..++..-. .|=|+. |+...+.++.+..
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-------------C------pVi~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f 213 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-------------C------PVIASLKGADL--AILVTEPTPFGLHDLKRALELVEHF 213 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-------------C------hHHHhhccCCE--EEEEecCCccchhHHHHHHHHHHHh
Confidence 4455554558999999876432 1 12333333333 333333 3345556666667
Q ss_pred CCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCC
Q 021241 173 CVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 173 ~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~ 211 (315)
+++..++-+.||+.+. ++.++|++.|+.+++--|+..
T Consensus 214 ~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 214 GIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred CCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 8888888888876665 899999999999999999953
No 54
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=55.95 E-value=21 Score=29.61 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 134 PDIPSTWKAMEALYDSG-KARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
.+..+++++|.++++.| +|..+|..|... .+..+.+..+. .+.+..|+-...-...+..+++.|+.++.
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~-~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIP-GLESIEELLGV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SC-CHHHHHHHHT---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccH-HHHHHHHHhCC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 55688999999998776 677777776552 24444444333 55555554332225678889999999887
No 55
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=55.73 E-value=1e+02 Score=30.22 Aligned_cols=124 Identities=8% Similarity=0.063 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeecc----CCHhHHHHHHHHc---C-CCCc-ccccccCCCcchHHHHHHHHhcCceEE
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSN----FSTKKLGDLLEVA---C-VPPA-VNQVECHPSWQQQKLREFCKSKGVHLS 204 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~---~-~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~vi 204 (315)
.+.+.+++.++.++++..++.+-++. .+...+.++++.. + .++. ..+...+.+.++.++++.+++.|+.-+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHI 301 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEE
Confidence 57889999999998876678877663 2344455544432 1 1111 123334444446789999999998877
Q ss_pred EecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHHHHHhcCC----eeecCC--CCHHHHHHhhc
Q 021241 205 GYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMGN----SLLPKS--TNEVRMKENLD 268 (315)
Q Consensus 205 a~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~----~~i~g~--~~~~~l~enl~ 268 (315)
..+.=.. ..+.++.+.+.+...-..-+++.+.+.|. ..|+|. .+.+.+++.++
T Consensus 302 ~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 302 SLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred EEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 7654421 12344444322222222235666666662 345663 56666666654
No 56
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=55.41 E-value=81 Score=28.54 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHH--HcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccc------cCCCcchHHHHHHHHhcCceEEEec
Q 021241 136 IPSTWKAMEALY--DSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVE------CHPSWQQQKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 136 ~~~~~~~L~~l~--~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~------~~~~~~~~~~~~~~~~~gi~via~~ 207 (315)
+-+..+.++.|. ..-++-++-=.+.+.+...++.+....++--.|.+ |---+|+..+.+.+.+-++-++.-+
T Consensus 142 lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~ 221 (294)
T COG0761 142 LVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGS 221 (294)
T ss_pred EEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECC
Confidence 444555555554 23355555545566666666555543222222322 2223355678888888888888755
Q ss_pred CCCCCCCCCCCCccCCChHHHHHHHHhCC------CHHHHHHHHHHhcC-CeeecCCCCHHHHHHhh
Q 021241 208 PLGSPGTTWIKSDVLKHPVVNMVAEKLGK------TPAQVCLRWGLQMG-NSLLPKSTNEVRMKENL 267 (315)
Q Consensus 208 pl~~gg~~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~enl 267 (315)
+-.+ ...+|.++|+++|. ++.++-..|..... ..+-.|+|+|+-+-+++
T Consensus 222 ~nSS-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 222 KNSS-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred CCCc-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 5432 24689999999986 67888888988866 56788999999877655
No 57
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=55.21 E-value=99 Score=27.97 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=67.8
Q ss_pred CCeeEEeeccCCHhHHHHHHHHcCCCCc----ccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCCh
Q 021241 150 GKARAIGVSNFSTKKLGDLLEVACVPPA----VNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHP 225 (315)
Q Consensus 150 G~ir~iGvs~~~~~~l~~~~~~~~~~~~----~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~ 225 (315)
.++..+-=++.+.+.+..+.+...-++. .+.+-+--..|+..+.+++++.++-++.-+.= --...
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~-----------SsNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKH-----------SSNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCC-----------CccHH
Confidence 4455555556666666666554321111 11122222234467888898888888762222 12246
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcC-CeeecCCCCHHHHHHhh
Q 021241 226 VVNMVAEKLGK------TPAQVCLRWGLQMG-NSLLPKSTNEVRMKENL 267 (315)
Q Consensus 226 ~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~enl 267 (315)
.|.++|++.+. ++.++-..|..... ..+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 89999999874 78889899998766 67889999999876543
No 58
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=54.09 E-value=1.8e+02 Score=26.65 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=82.0
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHH
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRD 102 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~r 102 (315)
.+.++..++++.+.+.|++.|.-.. | -..-+-+.++.. ++. ..-.++.|+|-.. .+.+ .-+.|+.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i-~~~-~~~~~i~itTNG~-------ll~~-~~~~L~~ 116 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAAL-AAL-PGIRDLALTTNGY-------LLAR-RAAALKD 116 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHH-Hhc-CCCceEEEEcCch-------hHHH-HHHHHHH
Confidence 3457788888888899998776542 3 111123333332 110 0123566766641 1222 2234555
Q ss_pred cCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEeeccCCHhHHHHHHHHcC-CCCc
Q 021241 103 LQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK----ARAIGVSNFSTKKLGDLLEVAC-VPPA 177 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~~-~~~~ 177 (315)
.|++.+- +-+|..++...... . ....++.++++++.+++.|. |..+.+.+.+.+++.++.+.+. ....
T Consensus 117 agl~~i~-ISlds~~~e~~~~i--~----~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 117 AGLDRVN-VSLDSLDPERFKAI--T----GRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred cCCCEEE-EEeccCCHHHhccC--C----CCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 6665443 34454432110000 0 01457899999999999885 3344444556666766666542 2223
Q ss_pred ccccccCCCcc-----------hHHHHHHHHhcCceEEE
Q 021241 178 VNQVECHPSWQ-----------QQKLREFCKSKGVHLSG 205 (315)
Q Consensus 178 ~~q~~~~~~~~-----------~~~~~~~~~~~gi~via 205 (315)
+.-++|.+... ..++++..++.|+.+..
T Consensus 190 v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 190 LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 33333333221 14567777776654433
No 59
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=53.28 E-value=46 Score=31.11 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCC---cchHHHHHHHHhcCceEEEecCC
Q 021241 139 TWKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPS---WQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 139 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~via~~pl 209 (315)
-++.+.+|++...+. ..|=|-++...+..+++.. -++++|+..... .....+.+.|+++|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~--a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER--LIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 367788888887665 6677778888888887764 357778776543 23367899999999999877554
No 60
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=52.77 E-value=1.5e+02 Score=25.44 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=64.1
Q ss_pred ccCCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHc
Q 021241 24 WQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDL 103 (315)
Q Consensus 24 ~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rL 103 (315)
++.++++-.+++..+++.|+.++|.--.. ..+.+....... ..+.+++++...+....+.+.+.+.+++.. .+
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~-~~~~~~~~~~~~-----~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~ 142 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDL-FPDDLKSRLAAR-----KGGTKIILSYHDFEKTPSWEELIELLEEMQ-EL 142 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGC-CHHHHHHHHHHH-----HTTSEEEEEEEESS---THHHHHHHHHHHH-HT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEccc-chhHHHHHHHHh-----hCCCeEEEEeccCCCCCCHHHHHHHHHHHH-hc
Confidence 44667888899999999999999985442 222222222211 146777777774333333333555555444 67
Q ss_pred CCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHH
Q 021241 104 QIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLL 169 (315)
Q Consensus 104 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 169 (315)
|.|.+=+...-.-. .+...+++...++++.-.+.-|+++.=..-.+.+++
T Consensus 143 gadivKia~~~~~~----------------~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~ 192 (224)
T PF01487_consen 143 GADIVKIAVMANSP----------------EDVLRLLRFTKEFREEPDIPVIAISMGELGRISRIL 192 (224)
T ss_dssp T-SEEEEEEE-SSH----------------HHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHC
T ss_pred CCCeEEEEeccCCH----------------HHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHH
Confidence 76655554443110 223445555666665434455555544444555543
No 61
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.64 E-value=1e+02 Score=28.78 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHc-CC---eeEEee--ccCCHhHHHHHHHHcC-CCCcccccccCCCcch----------HHHHHHH
Q 021241 134 PDIPSTWKAMEALYDS-GK---ARAIGV--SNFSTKKLGDLLEVAC-VPPAVNQVECHPSWQQ----------QKLREFC 196 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~-G~---ir~iGv--s~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~ 196 (315)
.++.++.+++.++.+. |+ +-|+=+ -|.+.+++.++.+... .+..++-++||+.... ....+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 5788888888887653 42 223322 2677888888777653 5667888888875421 3466778
Q ss_pred HhcCceEEEecCCCC
Q 021241 197 KSKGVHLSGYSPLGS 211 (315)
Q Consensus 197 ~~~gi~via~~pl~~ 211 (315)
+++|+.+......|.
T Consensus 303 ~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 303 HRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHCCceEEEECCCCC
Confidence 899999999988854
No 62
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=51.52 E-value=22 Score=24.09 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 021241 226 VVNMVAEKLGKTPAQVCLRWGLQ 248 (315)
Q Consensus 226 ~l~~la~~~~~s~aq~al~~~l~ 248 (315)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999864
No 63
>PRK07094 biotin synthase; Provisional
Probab=51.48 E-value=1.6e+02 Score=26.76 Aligned_cols=120 Identities=10% Similarity=0.103 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeecc-----CCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSN-----FSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~p 208 (315)
.+.+++.+.++.+++.| ++.+.++. +..+.+.++++.....+. +.+.+++.....+.++..++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 46788888888888876 46665542 234566666554332121 233445555557788888998888766433
Q ss_pred CCCCCCCCCCCccCCChHHHHHHHHhCCCHHHH--HHHHHHhcC----CeeecCC--CCHHHHHHhhc
Q 021241 209 LGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQV--CLRWGLQMG----NSLLPKS--TNEVRMKENLD 268 (315)
Q Consensus 209 l~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~--al~~~l~~~----~~~i~g~--~~~~~l~enl~ 268 (315)
=. ...+.++.+.. +.+..+. +++++...| ...++|. -+.+++.+.+.
T Consensus 148 Es-----------~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 148 ET-----------ADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred cc-----------CCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 21 11223333332 3444443 566666665 3456664 56666666554
No 64
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=51.36 E-value=57 Score=31.79 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=84.2
Q ss_pred HHHHHHHHccCCEE--eCCCCc----------CCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCC-CCCCc--------
Q 021241 33 NAVAAAIKAGYRHI--DCAQIY----------GNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAY-HEPED-------- 91 (315)
Q Consensus 33 ~~l~~Al~~Gi~~~--DTA~~Y----------g~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~-~~~~~-------- 91 (315)
+.++..-+.|+..+ =||-+| |.-+.+..+-++.+.. --+.++||++-++... ..|..
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~--~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGG--SLKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCC--CCceeEEEEeCCCccccccHHHHHHcCceE
Confidence 34556667787655 355544 2345556666666532 3588899999885421 00100
Q ss_pred --HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHH
Q 021241 92 --VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLL 169 (315)
Q Consensus 92 --i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 169 (315)
++-.-.+.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-.+.+.++.
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~---------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~ 243 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT---------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELL 243 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc---------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHH
Confidence 011123334788899999751 568999999999999999999999999999999988
Q ss_pred HHcCCCC--ccccccc
Q 021241 170 EVACVPP--AVNQVEC 183 (315)
Q Consensus 170 ~~~~~~~--~~~q~~~ 183 (315)
+.. +.| ..-|...
T Consensus 244 ~r~-i~pDlvtDQTSa 258 (545)
T TIGR01228 244 KRG-VVPDVVTDQTSA 258 (545)
T ss_pred HcC-CCCCCcCCCCcc
Confidence 864 444 4447665
No 65
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=51.19 E-value=2e+02 Score=26.32 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=76.2
Q ss_pred cCCchhHHHHHHHHHHccCCEEeCCC---------Cc-CC-----HHHHHHHHHhhhhcCCCCCCceEEEeccCCC-CCC
Q 021241 25 QSDPGVVGNAVAAAIKAGYRHIDCAQ---------IY-GN-----EKEIGLVLKKFFEDAVVKREDLWITSKLWNA-YHE 88 (315)
Q Consensus 25 ~~~~~~~~~~l~~Al~~Gi~~~DTA~---------~Y-g~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~-~~~ 88 (315)
..++++..+..+.+.+.|+..||.-- .| |+ .+.+.+.++.. + .+-++-|+.|+... +..
T Consensus 71 g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-r----~~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 71 GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-V----DAVDIPVTVKIRIGWDDA 145 (319)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-H----hhcCCCEEEEEEcccCCC
Confidence 34667788888888889999888621 22 32 34555555543 1 11235677886321 111
Q ss_pred CCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc-CCHhHHHH
Q 021241 89 PEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN-FSTKKLGD 167 (315)
Q Consensus 89 ~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~ 167 (315)
...+ ..+-+.|+..|+ |.+.+|...... . ..-...|+.+.++++.=.+--||... .+.+++.+
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~-~-----------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~ 209 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQ-G-----------YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKA 209 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEcccccc-c-----------CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHH
Confidence 1112 345556777785 555667532211 0 11123477777777765677777766 45678888
Q ss_pred HHHHcCCCCcccccc
Q 021241 168 LLEVACVPPAVNQVE 182 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~ 182 (315)
+++..+. +.+++-
T Consensus 210 ~l~~~ga--d~Vmig 222 (319)
T TIGR00737 210 MLETTGC--DGVMIG 222 (319)
T ss_pred HHHhhCC--CEEEEC
Confidence 8865543 555554
No 66
>PRK05414 urocanate hydratase; Provisional
Probab=51.11 E-value=59 Score=31.83 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=83.9
Q ss_pred HHHHHHHccCCEE--eCCCCc----------CCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCC-CCCCc---------
Q 021241 34 AVAAAIKAGYRHI--DCAQIY----------GNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAY-HEPED--------- 91 (315)
Q Consensus 34 ~l~~Al~~Gi~~~--DTA~~Y----------g~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~-~~~~~--------- 91 (315)
-++..-+.|+..+ =||-+| |.-+.+..+-++.+. | -.+.++||++-++... ..|..
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 194 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAVCL 194 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCceEE
Confidence 4556667787655 355544 234555566666653 3 3588899999885421 00100
Q ss_pred -HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHH
Q 021241 92 -VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 92 -i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (315)
++-.-.+.-+|+.+.|+|.+- .++++.++..++.+++|+..+||+-..-++.+.++.+
T Consensus 195 ~vEvd~~ri~kR~~~gyld~~~---------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~ 253 (556)
T PRK05414 195 AVEVDESRIDKRLRTGYLDEKA---------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVR 253 (556)
T ss_pred EEEECHHHHHHHHhCCcceeEc---------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHH
Confidence 111123344788999999751 5689999999999999999999999999999999887
Q ss_pred HcCCCC--ccccccc
Q 021241 171 VACVPP--AVNQVEC 183 (315)
Q Consensus 171 ~~~~~~--~~~q~~~ 183 (315)
.. +.| ..-|...
T Consensus 254 ~~-i~pDlvtDQTSa 267 (556)
T PRK05414 254 RG-IRPDLVTDQTSA 267 (556)
T ss_pred cC-CCCCccCcCccc
Confidence 64 444 4447665
No 67
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=50.81 E-value=1.1e+02 Score=26.34 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecCCC
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~pl~ 210 (315)
++.+.+|.+...+. ..+=|-++...+..+++.. ..+++|+..+..- .-..+..+|+++|+.++.++.+.
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~--~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~ 206 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELG--AVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLE 206 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCC
Confidence 46677777776655 3345556667776666553 3477777765542 22578899999999999988764
No 68
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=50.79 E-value=1.9e+02 Score=26.89 Aligned_cols=135 Identities=9% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHH
Q 021241 88 EPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGD 167 (315)
Q Consensus 88 ~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 167 (315)
+++.+.+.+++ .+..|..++.+..-+.|+ .+.+.+.+.++.+++.. -.+-++.+++..+..
T Consensus 80 ~~eeI~~~a~~-~~~~G~~~v~l~~G~~p~----------------~~~~~~~e~i~~Ik~~~--p~i~i~~~~~~ei~~ 140 (351)
T TIGR03700 80 SLEEIVARVKE-AYAPGATEVHIVGGLHPN----------------LPFEWYLDMIRTLKEAY--PDLHVKAFTAVEIHH 140 (351)
T ss_pred CHHHHHHHHHH-HHHCCCcEEEEecCCCCC----------------CCHHHHHHHHHHHHHHC--CCceEEeCCHHHHHH
Confidence 34455555543 245677777776444432 33455666666676664 234455555555554
Q ss_pred HHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHH--HHHHH
Q 021241 168 LLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQ--VCLRW 245 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq--~al~~ 245 (315)
+....+ ....+.+...++.|+..+... |. ..+..+.++.++.. +.+..+ -++++
T Consensus 141 ~~~~~g-------------~~~~e~l~~LkeAGld~~~~~-----g~-----E~~~~~v~~~i~~~-~~~~~~~l~~i~~ 196 (351)
T TIGR03700 141 FSKISG-------------LPTEEVLDELKEAGLDSMPGG-----GA-----EIFAEEVRQQICPE-KISAERWLEIHRT 196 (351)
T ss_pred HHHHcC-------------CCHHHHHHHHHHcCCCcCCCC-----cc-----cccCHHHHhhcCCC-CCCHHHHHHHHHH
Confidence 433221 134567777888888755421 11 22333344444432 244445 26777
Q ss_pred HHhcC----CeeecCCC-CHHHHHH
Q 021241 246 GLQMG----NSLLPKST-NEVRMKE 265 (315)
Q Consensus 246 ~l~~~----~~~i~g~~-~~~~l~e 265 (315)
+...| +..++|.. ++++..+
T Consensus 197 a~~~Gi~~~sg~i~GlgEt~edrv~ 221 (351)
T TIGR03700 197 AHELGLKTNATMLYGHIETPAHRVD 221 (351)
T ss_pred HHHcCCCcceEEEeeCCCCHHHHHH
Confidence 77766 35577763 3434333
No 69
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=50.60 E-value=1.9e+02 Score=29.61 Aligned_cols=146 Identities=20% Similarity=0.204 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCcc
Q 021241 29 GVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYL 108 (315)
Q Consensus 29 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~i 108 (315)
+-+.+++++|-+.|++.+- .|.-+.. +.--+ .+-++-++.-|..+ |-...-.+++..+--.-.-+
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYseqD~-~sMHR-------qKADEaY~iGk~l~----PV~AYL~ideii~iak~~~v 107 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSEQDR-LSMHR-------QKADEAYLIGKGLP----PVGAYLAIDEIISIAKKHNV 107 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEeccch-hhhhh-------hccccceecccCCC----chhhhhhHHHHHHHHHHcCC
Confidence 5578999999999999874 4643322 22222 25678888888743 22222233333332222234
Q ss_pred ceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHH--------H-HHcCCCCccc
Q 021241 109 DLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDL--------L-EVACVPPAVN 179 (315)
Q Consensus 109 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~--------~-~~~~~~~~~~ 179 (315)
|. +| |-.. -+.|--+.-.+.++. -|++||=|- +.++.+ + -.+++ -++
T Consensus 108 da--vH-PGYG---------------FLSErsdFA~av~~A-Gi~fiGPsp---eVi~~mGDKv~AR~~Ai~agV--pvV 163 (1176)
T KOG0369|consen 108 DA--VH-PGYG---------------FLSERSDFAQAVQDA-GIRFIGPSP---EVIDSMGDKVAARAIAIEAGV--PVV 163 (1176)
T ss_pred Ce--ec-CCcc---------------ccccchHHHHHHHhc-CceEeCCCH---HHHHHhhhHHHHHHHHHHcCC--Ccc
Confidence 44 34 1111 011222333344444 578999763 333221 1 11222 122
Q ss_pred ccccCCCcchHHHHHHHHhcCceEEEecCCCCCC
Q 021241 180 QVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPG 213 (315)
Q Consensus 180 q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg 213 (315)
-.--.|...-.+.+++|++.|..||--..+++||
T Consensus 164 PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 164 PGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 2222333344789999999999999999998776
No 70
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=50.37 E-value=1.8e+02 Score=25.70 Aligned_cols=165 Identities=14% Similarity=0.073 Sum_probs=86.9
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCCCC-----------cC---CHHHHHHHHHhhhhcCCCCCC
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQI-----------YG---NEKEIGLVLKKFFEDAVVKRE 74 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~-----------Yg---~E~~lG~al~~~~~~~~~~R~ 74 (315)
+|+.|.+.+. |.++.++..++++...+.||..++.+.. |- .++.+.+..+. .+..
T Consensus 7 TlRDG~Q~~~-----~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~------~~~~ 75 (263)
T cd07943 7 TLRDGMHAVR-----HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA------LKQA 75 (263)
T ss_pred CCCcCcccCC-----eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh------ccCC
Confidence 4566665432 4456788899999999999999999721 21 24444333332 1333
Q ss_pred ceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE
Q 021241 75 DLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARA 154 (315)
Q Consensus 75 ~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 154 (315)
++.+..-. .... .+.++.+++ .|++.+-++.-- .....+.+..+..++.|.--.
T Consensus 76 ~~~~~~~~--~~~~----~~~i~~a~~-~g~~~iri~~~~-------------------s~~~~~~~~i~~ak~~G~~v~ 129 (263)
T cd07943 76 KLGVLLLP--GIGT----VDDLKMAAD-LGVDVVRVATHC-------------------TEADVSEQHIGAARKLGMDVV 129 (263)
T ss_pred EEEEEecC--CccC----HHHHHHHHH-cCCCEEEEEech-------------------hhHHHHHHHHHHHHHCCCeEE
Confidence 43322210 0111 245555554 466665554311 223566778888899998666
Q ss_pred Eeecc---CCHhHHHHHHHHc-CCCCcccccccC--CCcch--HHHHHHHHhc----CceEEEecCCC
Q 021241 155 IGVSN---FSTKKLGDLLEVA-CVPPAVNQVECH--PSWQQ--QKLREFCKSK----GVHLSGYSPLG 210 (315)
Q Consensus 155 iGvs~---~~~~~l~~~~~~~-~~~~~~~q~~~~--~~~~~--~~~~~~~~~~----gi~via~~pl~ 210 (315)
+.++. ++++.+.++.+.. ...++.+.+.=+ .+.|. .+++..++++ -+++.++.-++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~G 197 (263)
T cd07943 130 GFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLG 197 (263)
T ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 66532 4455554444432 122333322211 22222 4566666654 35666666663
No 71
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=49.07 E-value=2.6e+02 Score=27.15 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=64.9
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCC-CCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCC----ccceEeecCCCCccCCCC
Q 021241 50 QIYGNEKEIGLVLKKFFEDAVVK-REDLWITSKLWNAYHEPEDVPEALDRTLRDLQID----YLDLYLMHWPVKMKKGSV 124 (315)
Q Consensus 50 ~~Yg~E~~lG~al~~~~~~~~~~-R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d----~iDl~~lH~p~~~~~~~~ 124 (315)
-.||.|+-|-++|++..+.. + .+-++|.|-+.. ..--+++..-+++.-++|.-+ .+.++.+|.|.......
T Consensus 69 vVfGG~~kL~~aI~~~~~~~--~~p~~I~V~ttC~~-eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~- 144 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRY--PNLRVIPIITTCST-ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQV- 144 (457)
T ss_pred eEECcHHHHHHHHHHHHHhC--CCCCEEEEECCchH-HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHH-
Confidence 35888999999998864432 2 234667666532 333456666666543333222 47889999887643110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH------HcCCeeEEeeccC--CHhHHHHHHHHcCCCCc
Q 021241 125 GFKPENLDKPDIPSTWKAMEALY------DSGKARAIGVSNF--STKKLGDLLEVACVPPA 177 (315)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~L~~l~------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~ 177 (315)
.-...++++|-+.. .+++|--||-.+. +.+.+.++++..++++.
T Consensus 145 ---------~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn 196 (457)
T TIGR02932 145 ---------TGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDAN 196 (457)
T ss_pred ---------HHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 12333343333222 2466877764432 44578888887765443
No 72
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=48.15 E-value=2.2e+02 Score=26.10 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCchhHHHHHHHHHHccCCEEeC----------CCCcCC-----HHHHHHHHHhhhhcCCCCCCceEEEeccCCC-CCCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDC----------AQIYGN-----EKEIGLVLKKFFEDAVVKREDLWITSKLWNA-YHEP 89 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DT----------A~~Yg~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~-~~~~ 89 (315)
.++++..+..+.+.+.|+..||. ...+|+ -+.+.+.++...+ . -++-|+.|+... +.+.
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a----~d~pv~vKiR~G~~~~~ 148 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-A----VDVPVTLKIRTGWAPEH 148 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-h----cCCceEEEEEccccCCc
Confidence 46677777777777899999993 233452 4455555554311 1 134577776321 1111
Q ss_pred CcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccC-CHhHHHHH
Q 021241 90 EDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNF-STKKLGDL 168 (315)
Q Consensus 90 ~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~ 168 (315)
... ..+-+-++..|. |.+.+|.-..... ..-..-|+.+.++++.=.|-=||.... +.+++.++
T Consensus 149 ~~~-~~~a~~le~~G~---d~i~vh~rt~~~~------------~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~ 212 (321)
T PRK10415 149 RNC-VEIAQLAEDCGI---QALTIHGRTRACL------------FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAV 212 (321)
T ss_pred chH-HHHHHHHHHhCC---CEEEEecCccccc------------cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 122 233344667774 6667885432111 001123677778877767778887774 67788888
Q ss_pred HHHcCCCCcccccc
Q 021241 169 LEVACVPPAVNQVE 182 (315)
Q Consensus 169 ~~~~~~~~~~~q~~ 182 (315)
++..+. +.+|+-
T Consensus 213 l~~~ga--dgVmiG 224 (321)
T PRK10415 213 LDYTGA--DALMIG 224 (321)
T ss_pred HhccCC--CEEEEC
Confidence 876543 566654
No 73
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=48.03 E-value=28 Score=30.50 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=43.3
Q ss_pred CCCcccCcccccccc---C---C---chhHHHH----HHHHHHccCCEEeCCCC---cC--CHHHHHHHHHhh---hhcC
Q 021241 11 NTGAKIPSVGLGTWQ---S---D---PGVVGNA----VAAAIKAGYRHIDCAQI---YG--NEKEIGLVLKKF---FEDA 69 (315)
Q Consensus 11 ~tg~~vs~lglGt~~---~---~---~~~~~~~----l~~Al~~Gi~~~DTA~~---Yg--~E~~lG~al~~~---~~~~ 69 (315)
.+|+.+|.++|...+ + + .+++.++ +..|.+.|||.|--|.. |. +++...+++.+. ..-.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 689999999998754 1 1 2344444 44566889999998842 32 555555555432 1111
Q ss_pred CCCCCceEEEecc
Q 021241 70 VVKREDLWITSKL 82 (315)
Q Consensus 70 ~~~R~~v~i~tK~ 82 (315)
.|..|.++.-+
T Consensus 145 --~~aqV~lAvEi 155 (287)
T COG3623 145 --ARAQVMLAVEI 155 (287)
T ss_pred --HhhccEEEeee
Confidence 46777777665
No 74
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=48.03 E-value=85 Score=27.98 Aligned_cols=84 Identities=21% Similarity=0.135 Sum_probs=56.6
Q ss_pred cccccccCCchh-HHHHHHHHHHccCCEEeCCCCcC----C-H--HHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCC
Q 021241 19 VGLGTWQSDPGV-VGNAVAAAIKAGYRHIDCAQIYG----N-E--KEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPE 90 (315)
Q Consensus 19 lglGt~~~~~~~-~~~~l~~Al~~Gi~~~DTA~~Yg----~-E--~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~ 90 (315)
+.+=|...++++ ...+.+.|.++|..|+=|+..|+ + | +++-+.+++. + ... -+.-|....-.+.+
T Consensus 136 VIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~--~vgIKAsGGIrt~~ 208 (257)
T PRK05283 136 VIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAK--TVGFKPAGGVRTAE 208 (257)
T ss_pred EEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCC--CeeEEccCCCCCHH
Confidence 444444456664 78899999999999999999996 1 2 3333333321 0 012 25567655556778
Q ss_pred cHHHHHHHHHHHcCCCccc
Q 021241 91 DVPEALDRTLRDLQIDYLD 109 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iD 109 (315)
....-++.--+.||.++++
T Consensus 209 ~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 209 DAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHhChhhcC
Confidence 8888999999999988776
No 75
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.40 E-value=1.7e+02 Score=27.52 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=79.5
Q ss_pred CHHHHHHHHHhhhhc-CC-CCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccce-E--eecCCCCccCCCCCCCC
Q 021241 54 NEKEIGLVLKKFFED-AV-VKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDL-Y--LMHWPVKMKKGSVGFKP 128 (315)
Q Consensus 54 ~E~~lG~al~~~~~~-~~-~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl-~--~lH~p~~~~~~~~~~~~ 128 (315)
+-+.+-++|+..-.+ |. +....+.|+|-... ..+++ |... |. .+ + -||.++...........
T Consensus 175 N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~---------~~i~~-L~~~--dl-~v~LaiSLha~d~e~r~~l~pv~ 241 (356)
T PRK14462 175 NLDNVSKAIKIFSENDGLAISPRRQTISTSGLA---------SKIKK-LGEM--NL-GVQLAISLHAVDDELRSELMPIN 241 (356)
T ss_pred CHHHHHHHHHHhcCccCCCcCCCceEEECCCCh---------HHHHH-HHhc--CC-CeEEEEECCCCCHHHHHHhCCCC
Confidence 566677777765221 21 12235577774311 23333 2221 21 12 2 38988754322111111
Q ss_pred CCCCCCCHHHHHHHHHHHH-HcCC---eeEEeec--cCCHhHHHHHHHHcC-CCCcccccccCCCcc------h----HH
Q 021241 129 ENLDKPDIPSTWKAMEALY-DSGK---ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVECHPSWQ------Q----QK 191 (315)
Q Consensus 129 ~~~~~~~~~~~~~~L~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~ 191 (315)
...+++++++++.... +.|+ |+|+=+. |.+.+++.++.+... .+..++-++||++.. . ..
T Consensus 242 ---~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~ 318 (356)
T PRK14462 242 ---KAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIK 318 (356)
T ss_pred ---ccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHH
Confidence 1156788999888655 5554 6677666 455677777766543 355777888887652 1 23
Q ss_pred HHHHHHhcCceEEEecCCCC
Q 021241 192 LREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 192 ~~~~~~~~gi~via~~pl~~ 211 (315)
..+..+++|+.+......|.
T Consensus 319 f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 319 FQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred HHHHHHHCCCcEEEeCCCCC
Confidence 55567788999988887743
No 76
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=47.01 E-value=43 Score=32.64 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=63.6
Q ss_pred CCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH----cCCeeEEeec--cCC
Q 021241 88 EPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD----SGKARAIGVS--NFS 161 (315)
Q Consensus 88 ~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~G~ir~iGvs--~~~ 161 (315)
+.+.|.+.++. ++++|...+-|+.=..|.. .+++-+.+.++.+++ .|.++.++|+ ..+
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~---------------~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt 179 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPPN---------------CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTT 179 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCCC---------------CCHHHHHHHHHHHHHhccccCcceeeEEEeecCC
Confidence 44567777764 5678877665542222211 456666677777765 5777766664 466
Q ss_pred HhHHHHHHHHcCCCCcccccccC--------CCcc------hHHHHHHHHhcCceEEEecCCC
Q 021241 162 TKKLGDLLEVACVPPAVNQVECH--------PSWQ------QQKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~q~~~~--------~~~~------~~~~~~~~~~~gi~via~~pl~ 210 (315)
.+++.++.+.+-....++|=-|| +..+ +-+.++.+++.|+.-++.+.|-
T Consensus 180 ~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~ 242 (469)
T PRK09613 180 VENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLF 242 (469)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEE
Confidence 77888887654323344443332 2111 1357888999999866666554
No 77
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=46.85 E-value=1.9e+02 Score=25.02 Aligned_cols=170 Identities=13% Similarity=0.050 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCc
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDY 107 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~ 107 (315)
.....+++..|.+.|+..|=.+++...........+.. . ++-|-+-+=.....+ ..++.-+++.. +.
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~------~--~i~Il~GiEi~~~~~----~~~~~~~~~~~-~~ 81 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL------L--GFEIFRGVEIVASNP----SKLRGLVGKFR-KK 81 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh------c--CCcEEeeEEEecCCH----HHHHHHHHhcc-Cc
Confidence 45678999999999999886666543110000011111 1 233322221111122 22333344422 35
Q ss_pred cceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccC---CH---hHHHHHHHHcCCCCccccc
Q 021241 108 LDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNF---ST---KKLGDLLEVACVPPAVNQV 181 (315)
Q Consensus 108 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~---~~---~~l~~~~~~~~~~~~~~q~ 181 (315)
.|++.+| |. . +. ....+.+.+.|.-||--.. .. ..+.++...-+ .++.+
T Consensus 82 ~d~v~v~-~~-----------------~-~~---~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v~lEI 136 (237)
T PRK00912 82 VDVLAVH-GG-----------------D-EK---VNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---VAIEF 136 (237)
T ss_pred ccEEEEe-CC-----------------C-HH---HHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---eEEEE
Confidence 7888888 11 1 11 2235777888877775432 11 12222222222 34455
Q ss_pred ccCCCcc------------hHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHH
Q 021241 182 ECHPSWQ------------QQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQV 241 (315)
Q Consensus 182 ~~~~~~~------------~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~ 241 (315)
+++++.. ...++..|++.|+.++.-|=--.. ..+........++++.|.+..++
T Consensus 137 n~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~------~~l~~~~~~~~l~~~~Gl~~~~~ 202 (237)
T PRK00912 137 NLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSC------YDLRSPREMIALAELFGMEEDEA 202 (237)
T ss_pred EchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc------cccCCHHHHHHHHHHcCCCHHHH
Confidence 5554311 146899999999888653321110 12333456777888888776664
No 78
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.45 E-value=1.6e+02 Score=27.73 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=63.1
Q ss_pred eEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH-HcCC---eeEEeec--cCCHhHHHHHHHHcC-C---CCccc
Q 021241 110 LYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALY-DSGK---ARAIGVS--NFSTKKLGDLLEVAC-V---PPAVN 179 (315)
Q Consensus 110 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~---~~~~~ 179 (315)
.+-||.++............. .+++++++++.+.. +.|+ |+|+=+. |.+.+++.++.+... . ...++
T Consensus 241 avSLha~d~e~R~~l~p~n~~---~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VN 317 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTR---WKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVN 317 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEE
Confidence 367898876432221111111 56899999988887 4464 6677666 445555655555443 2 45778
Q ss_pred ccccCCCcch----------HHHHHHHHhcCceEEEecCCCC
Q 021241 180 QVECHPSWQQ----------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 180 q~~~~~~~~~----------~~~~~~~~~~gi~via~~pl~~ 211 (315)
-++||+.... ....+..+++||.+......|.
T Consensus 318 LIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 318 LIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 8899985431 3467778899999999888854
No 79
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=46.39 E-value=64 Score=30.70 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCC---cchHHHHHHHHhcCceEEEecCC
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPS---WQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~via~~pl 209 (315)
++.+.+|++.-.|. ..|=|-++...+..+++... ++++|+...-. .....+.+.|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57788888876555 66777788899998887643 47778765543 23367889999999999987654
No 80
>PRK06361 hypothetical protein; Provisional
Probab=45.68 E-value=1.9e+02 Score=24.50 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHccCCEEeCCCCcC--C-HHHHH---HHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHH
Q 021241 29 GVVGNAVAAAIKAGYRHIDCAQIYG--N-EKEIG---LVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRD 102 (315)
Q Consensus 29 ~~~~~~l~~Al~~Gi~~~DTA~~Yg--~-E~~lG---~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~r 102 (315)
....++++.|.+.|+..|=.+++.. + ...+- +..++. +.. ..=+++...-+.. ..++. ...+.+.+.+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~--~~i~v~~GiE~~~--~~~~~-~~~~~~~~~~ 83 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY--WDIEVIPGVELTH--VPPKL-IPKLAKKARD 83 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc--CCCEEEEEEEEcc--cCchh-hchHHHHHHH
Confidence 3467899999999999887766643 1 11111 111111 000 1112333333321 22223 3334456666
Q ss_pred cCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc-CCHhHHHHHHHHcCCCCccccc
Q 021241 103 LQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN-FSTKKLGDLLEVACVPPAVNQV 181 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~q~ 181 (315)
++ .|+..+|...... +.. . ..-.++.+.|.+.-+|=-. .....+ +++...+.-+.++-
T Consensus 84 ~~---~~~~svH~~~~~~--------------~~~-~-~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~~lEin~- 142 (212)
T PRK06361 84 LG---AEIVVVHGETIVE--------------PVE-E-GTNLAAIECEDVDILAHPGLITEEEA-ELAAENGVFLEITA- 142 (212)
T ss_pred CC---CEEEEECCCCcch--------------hhh-h-hhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCeEEEEEC-
Confidence 65 5566899432110 000 0 1114566788765554222 122222 33332332222221
Q ss_pred ccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHHH
Q 021241 182 ECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLRW 245 (315)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~ 245 (315)
..........+++.+++.|+.++.-|..... .++...+.+..++++.|.+..++--.+
T Consensus 143 ~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~------~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 143 RKGHSLTNGHVARIAREAGAPLVINTDTHAP------SDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred CCCcccchHHHHHHHHHhCCcEEEECCCCCH------HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 0111123357899999999998776666321 233344667778888888877764433
No 81
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=45.60 E-value=1.4e+02 Score=29.05 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcC--CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHc
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYG--NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDL 103 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rL 103 (315)
.+.+.+.+++.+..++|.+.|--++--| +-...|+-++ +++.+...|+++.|+|.+.. +. .+--+--.+=..-
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~-y~~tn~~~~e~v~Is~HcHN---D~-G~a~Ant~~g~~A 275 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIE-YLKTNTPGREKVCISTHCHN---DL-GCATANTELGLLA 275 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHH-HHHccCCCceeEEEEEeecC---Cc-cHHHHHHHHHhhc
Confidence 4556788999999999999987777666 4556666664 34455567999999999843 11 1222222222344
Q ss_pred CCCccceEeecCCCC
Q 021241 104 QIDYLDLYLMHWPVK 118 (315)
Q Consensus 104 g~d~iDl~~lH~p~~ 118 (315)
|-++||.-++-.-.+
T Consensus 276 GA~~VE~~i~GiGER 290 (560)
T KOG2367|consen 276 GARQVEVTINGIGER 290 (560)
T ss_pred CcceEEEEeeccccc
Confidence 778999888765433
No 82
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=45.23 E-value=2.6e+02 Score=26.12 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=33.2
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhh
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKF 65 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~ 65 (315)
+|+.|.+.+.+. ++.++..++++..-+.||..|+....-.++.- -++++..
T Consensus 7 TLRDG~Q~~~~~-----~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~-~e~i~~i 57 (363)
T TIGR02090 7 TLRDGEQTPGVS-----LTVEQKVEIARKLDELGVDVIEAGFPIASEGE-FEAIKKI 57 (363)
T ss_pred CCCCcCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHH-HHHHHHH
Confidence 566777765433 45688888999888999999997643334322 2444443
No 83
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=44.82 E-value=2.5e+02 Score=25.72 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=79.1
Q ss_pred ccCCchhHHHHHHHHHHccCCEEeCC----------CCcC-----CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCC
Q 021241 24 WQSDPGVVGNAVAAAIKAGYRHIDCA----------QIYG-----NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHE 88 (315)
Q Consensus 24 ~~~~~~~~~~~l~~Al~~Gi~~~DTA----------~~Yg-----~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~ 88 (315)
+..++++..+....+.+.|+..||-- ..+| .-+.+.+.++...+ . + .+++-|+.|+.....+
T Consensus 70 ~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~-~-~~~~pVsvKiR~g~~~ 146 (312)
T PRK10550 70 LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A-V-PAHLPVTVKVRLGWDS 146 (312)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h-c-CCCcceEEEEECCCCC
Confidence 34566777777778888999999832 1223 24455555554311 1 1 1246788886432112
Q ss_pred CCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccC-CHhHHHH
Q 021241 89 PEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNF-STKKLGD 167 (315)
Q Consensus 89 ~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~ 167 (315)
.+. ...+-+.|+..| +|.+.+|.-...... . .+ .--|+...++++.-.|-=||..+. +++++.+
T Consensus 147 ~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y----~------g~-~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~ 211 (312)
T PRK10550 147 GER-KFEIADAVQQAG---ATELVVHGRTKEDGY----R------AE-HINWQAIGEIRQRLTIPVIANGEIWDWQSAQQ 211 (312)
T ss_pred chH-HHHHHHHHHhcC---CCEEEECCCCCccCC----C------CC-cccHHHHHHHHhhcCCcEEEeCCcCCHHHHHH
Confidence 222 235555567777 577778853321100 0 00 012677888888777888888774 7788888
Q ss_pred HHHHcCCCCcccccc
Q 021241 168 LLEVACVPPAVNQVE 182 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~ 182 (315)
+++..+. +.+++-
T Consensus 212 ~l~~~g~--DgVmiG 224 (312)
T PRK10550 212 CMAITGC--DAVMIG 224 (312)
T ss_pred HHhccCC--CEEEEc
Confidence 8766543 555443
No 84
>PRK07534 methionine synthase I; Validated
Probab=44.10 E-value=2.7e+02 Score=25.86 Aligned_cols=214 Identities=14% Similarity=0.090 Sum_probs=114.7
Q ss_pred ccCCchhH-HHHHHHHHHccCCEEeCCCCcC-CHH-------------HHHHHHH--hhhhcCCCCCCceEEEeccCCCC
Q 021241 24 WQSDPGVV-GNAVAAAIKAGYRHIDCAQIYG-NEK-------------EIGLVLK--KFFEDAVVKREDLWITSKLWNAY 86 (315)
Q Consensus 24 ~~~~~~~~-~~~l~~Al~~Gi~~~DTA~~Yg-~E~-------------~lG~al~--~~~~~~~~~R~~v~i~tK~~~~~ 86 (315)
|..+..+. .++=+..+++|-+.+=|.. |+ +-. ++-.+++ +..... ...+++|+--+++..
T Consensus 39 wsi~~Pe~V~~vH~~Yl~AGAdiI~TnT-y~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~--~~~~~~VaGsIGP~g 115 (336)
T PRK07534 39 WNEDHPDNITALHQGFVDAGSDIILTNS-FGGTAARLKLHDAQDRVHELNRAAAEIAREVADK--AGRKVIVAGSVGPTG 115 (336)
T ss_pred hcccCHHHHHHHHHHHHHhcCCEEEecC-cccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh--cCCccEEEEecCCCc
Confidence 44443344 4444467899999998654 53 311 1111221 110000 123577877776532
Q ss_pred --------CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec
Q 021241 87 --------HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS 158 (315)
Q Consensus 87 --------~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (315)
.+.+.+.+.....++.|--..+|++++-.. .++.|+..+++.+++.|+=-.+.++
T Consensus 116 ~~l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~-----------------p~l~E~~a~~~~~~~~~~Pv~vSft 178 (336)
T PRK07534 116 EIMEPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI-----------------SAPEEIRAAAEAAKLAGMPWCGTMS 178 (336)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-----------------CCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 233456777777777775456999999853 3467777777777777775556655
Q ss_pred cCC---------HhHHHHHHHHcCCCCcccccccCC-Ccch-HHHHHHHHhc-CceEEEecCCCCCCCCCCCCccCCChH
Q 021241 159 NFS---------TKKLGDLLEVACVPPAVNQVECHP-SWQQ-QKLREFCKSK-GVHLSGYSPLGSPGTTWIKSDVLKHPV 226 (315)
Q Consensus 159 ~~~---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~~-~~~~~~~~~~-gi~via~~pl~~gg~~~~~~~~~~~~~ 226 (315)
-.+ ...+...++..+..++++-+++.. ...- ..++...... ++.+++|--- |.. .......
T Consensus 179 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p----~~~~~~~ 251 (336)
T PRK07534 179 FDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIP----KYVDGHI 251 (336)
T ss_pred ECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCc----ccCCCcc
Confidence 322 223333333222344666666653 2211 3344444433 5677766543 220 0001000
Q ss_pred HHHHHHHhCCC---HHHHHHHHHHhcCCeeecCC--CCHHHHHHhhccCC
Q 021241 227 VNMVAEKLGKT---PAQVCLRWGLQMGNSLLPKS--TNEVRMKENLDVFD 271 (315)
Q Consensus 227 l~~la~~~~~s---~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 271 (315)
.+..+ .++.+-.| ...|..+|=|. ++|+||++..++++
T Consensus 252 ------~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 ------HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred ------ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 01122 35556677 45577777676 88999988777664
No 85
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=44.05 E-value=1.3e+02 Score=27.25 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=82.3
Q ss_pred cCcccccc---ccCCchhHHHHHHHHHHc-cCCEEeCCCCcC-----C-HHHHHHH---HHhhhhcCCCCCCceEEEecc
Q 021241 16 IPSVGLGT---WQSDPGVVGNAVAAAIKA-GYRHIDCAQIYG-----N-EKEIGLV---LKKFFEDAVVKREDLWITSKL 82 (315)
Q Consensus 16 vs~lglGt---~~~~~~~~~~~l~~Al~~-Gi~~~DTA~~Yg-----~-E~~lG~a---l~~~~~~~~~~R~~v~i~tK~ 82 (315)
|-+.+++- ...+.+.+.+-++..++. +..++|.-.... + ...+-+. |+....+| .-+++
T Consensus 104 vgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~G---k~Rfi----- 175 (342)
T KOG1576|consen 104 VGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEG---KIRFI----- 175 (342)
T ss_pred eeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcC---ceeEe-----
Confidence 34444443 234567778888888865 888888744322 2 2333333 44443334 11111
Q ss_pred CCCCCCCCcHHHHHHHHHHHcCCCccceEe--ecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccC
Q 021241 83 WNAYHEPEDVPEALDRTLRDLQIDYLDLYL--MHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNF 160 (315)
Q Consensus 83 ~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~--lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 160 (315)
+.+.+.-+-+.+.. +-+..++|+++ .|.- .....+++.|+.++.+ .+||.|-
T Consensus 176 Gitgypldvl~~~a-----e~~~G~~dvvlsY~ry~-----------------l~d~tLl~~~~~~~sk----~vgVi~A 229 (342)
T KOG1576|consen 176 GITGYPLDVLTECA-----ERGKGRLDVVLSYCRYT-----------------LNDNTLLRYLKRLKSK----GVGVINA 229 (342)
T ss_pred eecccchHHHHHHH-----hcCCCceeeehhhhhhc-----------------cccHHHHHHHHHHHhc----CceEEeh
Confidence 11223223333333 55667899987 5532 2335677888888755 5699988
Q ss_pred CHhHHHHHHHHcCCCCcccccccCCCcch-----HHHHHHHHhcCceE
Q 021241 161 STKKLGDLLEVACVPPAVNQVECHPSWQQ-----QKLREFCKSKGVHL 203 (315)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-----~~~~~~~~~~gi~v 203 (315)
++-.+--+ ...+. + +++|..++ ....++|+++|+.+
T Consensus 230 salsmgLL-t~~gp-~-----~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 230 SALSMGLL-TNQGP-P-----PWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred hhHHHHHh-hcCCC-C-----CCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 76555433 33332 2 35666655 45678899999875
No 86
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=43.94 E-value=39 Score=30.51 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCeeEEeeccCCHhHHHHHHHHcCC-CCcccccccCCCc-----chHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCC
Q 021241 150 GKARAIGVSNFSTKKLGDLLEVACV-PPAVNQVECHPSW-----QQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLK 223 (315)
Q Consensus 150 G~ir~iGvs~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~-----~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~ 223 (315)
+++-.+-=++++.+...++.+...- -+......+|-.+ |+..+.+.+++-++-++.-++- --.
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~-----------SsN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKN-----------SSN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCC-----------Ccc
Confidence 4777777788888777766655421 1111112233333 3356888888888777662222 112
Q ss_pred ChHHHHHHHHhCC------CHHHHHHHHHHhcC-CeeecCCCCHHHHHHhh
Q 021241 224 HPVVNMVAEKLGK------TPAQVCLRWGLQMG-NSLLPKSTNEVRMKENL 267 (315)
Q Consensus 224 ~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~enl 267 (315)
...|.++|++++. ++.++...|..... ..+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 3689999999884 78999999998876 67889999999876654
No 87
>PLN02363 phosphoribosylanthranilate isomerase
Probab=43.93 E-value=77 Score=28.22 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec-cCCHhHHHHHHHHcCCCCccc
Q 021241 101 RDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS-NFSTKKLGDLLEVACVPPAVN 179 (315)
Q Consensus 101 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~ 179 (315)
.++|.|++=+++...-.+. .+.+ ....+.+......++.+||. |-+.+.+.++++.. .++++
T Consensus 64 ~~~GaD~iGfIf~~~SpR~--------------Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~--~ld~V 126 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRS--------------ISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSS--DLELV 126 (256)
T ss_pred HHcCCCEEEEecCCCCCCc--------------CCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhc--CCCEE
Confidence 4699999999754321111 3333 33333333333246679985 78888888887764 56899
Q ss_pred cccc
Q 021241 180 QVEC 183 (315)
Q Consensus 180 q~~~ 183 (315)
|++-
T Consensus 127 QLHG 130 (256)
T PLN02363 127 QLHG 130 (256)
T ss_pred EECC
Confidence 9874
No 88
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=43.88 E-value=1.4e+02 Score=28.56 Aligned_cols=73 Identities=23% Similarity=0.258 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCccceEee-cCCCCccCCCCCCCCCCCCC--CCHHHHHHHH-HHHHHcCCeeEEeeccCC
Q 021241 86 YHEPEDVPEALDRTLRDLQIDYLDLYLM-HWPVKMKKGSVGFKPENLDK--PDIPSTWKAM-EALYDSGKARAIGVSNFS 161 (315)
Q Consensus 86 ~~~~~~i~~~~e~SL~rLg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~--~~~~~~~~~L-~~l~~~G~ir~iGvs~~~ 161 (315)
..+.+.+.+.+++.+ .|+.|+|.+|.| |-|........ ...+..+ ....+.++.. +.|.+.|. +.+|+|||.
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~--~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa 275 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRK--IKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFA 275 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhc--ccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhc
Confidence 344555666666555 578999999977 44432211100 0001000 1123445444 44556677 999999999
Q ss_pred H
Q 021241 162 T 162 (315)
Q Consensus 162 ~ 162 (315)
.
T Consensus 276 ~ 276 (416)
T COG0635 276 K 276 (416)
T ss_pred C
Confidence 7
No 89
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.83 E-value=2.4e+02 Score=25.14 Aligned_cols=136 Identities=11% Similarity=0.042 Sum_probs=68.7
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCC
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHE 88 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~ 88 (315)
+|+.|.+.+.+.| +.++..++++...++||..|+....--++.. ..+.+...+.+ ....++... ...
T Consensus 7 TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~-~~~~~~l~~~~--~~~~v~~~~-----r~~ 73 (262)
T cd07948 7 TLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAASPQS-RADCEAIAKLG--LKAKILTHI-----RCH 73 (262)
T ss_pred CCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCCHHH-HHHHHHHHhCC--CCCcEEEEe-----cCC
Confidence 4667777665444 4578889999999999999998642112221 22333221111 122232111 122
Q ss_pred CCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHH----HHHHHHHHcCCeeEEeecc---CC
Q 021241 89 PEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTW----KAMEALYDSGKARAIGVSN---FS 161 (315)
Q Consensus 89 ~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~l~~~G~ir~iGvs~---~~ 161 (315)
.+. ++.+++ .|++.|.++.-=++..... ....+.++.+ +..+.+++.|.--.+++.. .+
T Consensus 74 ~~d----i~~a~~-~g~~~i~i~~~~S~~~~~~---------~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~ 139 (262)
T cd07948 74 MDD----ARIAVE-TGVDGVDLVFGTSPFLREA---------SHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD 139 (262)
T ss_pred HHH----HHHHHH-cCcCEEEEEEecCHHHHHH---------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC
Confidence 333 444444 4888777765211100000 0003344544 4557777888766666542 33
Q ss_pred HhHHHHHHHH
Q 021241 162 TKKLGDLLEV 171 (315)
Q Consensus 162 ~~~l~~~~~~ 171 (315)
.+.+.++.+.
T Consensus 140 ~~~l~~~~~~ 149 (262)
T cd07948 140 LVDLLRVYRA 149 (262)
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 90
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.82 E-value=2e+02 Score=26.91 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=64.0
Q ss_pred eEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC--C--eeEEeec--cCCHhHHHHHHHHcC-CCCcccccc
Q 021241 110 LYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG--K--ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVE 182 (315)
Q Consensus 110 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~ 182 (315)
.+-||.|+............. .+++++++++.+..++. + +-|+=+. |.+.+++.++.+... .+..++-++
T Consensus 210 avSLha~~~e~R~~i~P~~~~---~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp 286 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKA---FSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIR 286 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccC---CCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 478898875432221111111 57899999999976542 2 2344443 677777888777653 556778888
Q ss_pred cCCCcc-----h-----HHHHHHHHhcCceEEEecCCCC
Q 021241 183 CHPSWQ-----Q-----QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 183 ~~~~~~-----~-----~~~~~~~~~~gi~via~~pl~~ 211 (315)
||+... . ....+..+++|+.+......|.
T Consensus 287 ~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 287 FHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 887432 1 3466678899999999888754
No 91
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=43.52 E-value=95 Score=24.87 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC--CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ--IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS 149 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 149 (315)
+|=-+.|+-|++. ......+++.+.++.+.+. ....|++++..+... .++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~--------------~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ--------------PDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC--------------CCHHHHHHHHHHHHHH
Confidence 4666788888754 5667788999998888764 356899999876542 5677777777777665
No 92
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.50 E-value=72 Score=27.37 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec-cCCHhHHHHHHHHcCCCCcc
Q 021241 100 LRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS-NFSTKKLGDLLEVACVPPAV 178 (315)
Q Consensus 100 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~ 178 (315)
+..+|.|++=+++...-.+. .+.+ ....+.+.. .+.+..+||. |-+++.+.++++.. .+++
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~--------------V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~--~~d~ 80 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRY--------------VSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETV--PLDL 80 (210)
T ss_pred HHHcCCCEEEEccCCCCCCc--------------CCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhc--CCCE
Confidence 34699999998743321111 3332 233333222 3568899987 67788888887764 5689
Q ss_pred cccccC
Q 021241 179 NQVECH 184 (315)
Q Consensus 179 ~q~~~~ 184 (315)
+|++-+
T Consensus 81 vQLHg~ 86 (210)
T PRK01222 81 LQLHGD 86 (210)
T ss_pred EEECCC
Confidence 998753
No 93
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=43.31 E-value=2.1e+02 Score=24.39 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHccCCEEeCC----------CCcC-----CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCc
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCA----------QIYG-----NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPED 91 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA----------~~Yg-----~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~ 91 (315)
++++..+..+.+.++|+..||-- +.|| ..+.+-+.++.. ++. +. +-|+.|+.......+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~-~~---~~v~vk~r~~~~~~~~ 139 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REA-VP---IPVTVKIRLGWDDEEE 139 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHh-cC---CCEEEEEeeccCCchH
Confidence 46777778888888999988752 3566 244455555543 111 11 4456665321111112
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccC-CHhHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNF-STKKLGDLLE 170 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~ 170 (315)
.. .+-+.|+..|+ |.+.+|....... ......|+.+.++++.-.+.-++..+. +.+++.++++
T Consensus 140 ~~-~~~~~l~~~Gv---d~i~v~~~~~~~~------------~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~ 203 (231)
T cd02801 140 TL-ELAKALEDAGA---SALTVHGRTREQR------------YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLE 203 (231)
T ss_pred HH-HHHHHHHHhCC---CEEEECCCCHHHc------------CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHH
Confidence 22 23334556675 5566775432110 000113566777777766776766664 5777777776
Q ss_pred Hc
Q 021241 171 VA 172 (315)
Q Consensus 171 ~~ 172 (315)
..
T Consensus 204 ~~ 205 (231)
T cd02801 204 QT 205 (231)
T ss_pred hc
Confidence 54
No 94
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=42.80 E-value=1.1e+02 Score=23.73 Aligned_cols=65 Identities=12% Similarity=-0.014 Sum_probs=44.3
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC--CccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI--DYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS 149 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 149 (315)
+|=-+.|+-|+.........+++.+.++.+.... .-.|++++..+...+ .+..++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~-------------~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR-------------ATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc-------------CCHHHHHHHHHHHHHH
Confidence 4555677777655456677888888888876542 356999998876432 5667777777776543
No 95
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=42.74 E-value=2.9e+02 Score=25.97 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=32.3
Q ss_pred HHHHHHHHHHccCCEEeCCCCcC--CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHc
Q 021241 31 VGNAVAAAIKAGYRHIDCAQIYG--NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDL 103 (315)
Q Consensus 31 ~~~~l~~Al~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rL 103 (315)
+.+.++.|.+.|+...=+++..+ +...+-+.++...+.| -+.+.++--++. ..|..+.+-+....+++
T Consensus 118 ~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G---a~~I~l~DT~G~--~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 118 MVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG---ADRVRFCDTVGI--LDPFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC---CCEEEEeccCCC--CCHHHHHHHHHHHHHhc
Confidence 34466666666765332222221 3344444444432223 334555554432 45666666666665555
No 96
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.64 E-value=1.7e+02 Score=27.39 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|+++|++- +|.. . +.-++.++.+.+.+ ..+..+++....+.++.+.+
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG---~p~~----------------~-~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~ 83 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG---IPAM----------------G-EEERAVIRAIVALGLPARLMAWCRARDADIEAAAR 83 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC----------------C-HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc
Confidence 44566677999999999985 2321 1 33366777777664 37777777777888887766
Q ss_pred HcCCCCcccccc--cCCCcc--------h------HHHHHHHHhcCceEEEecCC
Q 021241 171 VACVPPAVNQVE--CHPSWQ--------Q------QKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 171 ~~~~~~~~~q~~--~~~~~~--------~------~~~~~~~~~~gi~via~~pl 209 (315)
. +. +.+.+. .|..+. + .+.+++++++|..+. +++-
T Consensus 84 ~-g~--~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~-~~~e 134 (365)
T TIGR02660 84 C-GV--DAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS-VGGE 134 (365)
T ss_pred C-Cc--CEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE-Eeec
Confidence 4 23 222222 222111 1 357889999998755 4433
No 97
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=42.44 E-value=11 Score=36.38 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHHHHHhcC---CeeecC
Q 021241 190 QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMG---NSLLPK 256 (315)
Q Consensus 190 ~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~---~~~i~g 256 (315)
..-+.+++++||.++.+.-+.+ ++.....--.+|--||.|.+.-.|+|++... .++++|
T Consensus 80 NpEi~~A~e~~ipi~~r~e~La--------elm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 80 NPEIVAALERGIPVISRAEMLA--------ELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CHHHHHHHHcCCCeEcHHHHHH--------HHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 3455566666666666554422 1111112223445589999999999999874 566666
No 98
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=42.32 E-value=1.6e+02 Score=27.57 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=59.4
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCC---eeEEeecc--CCHhHHHHHHHHcC-CCCccccccc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD-SGK---ARAIGVSN--FSTKKLGDLLEVAC-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~G~---ir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.+++........... ..+++++++++.++.+ .|+ |+++=+.+ .+.+++.++.+... .++.++-++|
T Consensus 219 iSL~a~~~e~r~~l~p~~~---~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPy 295 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINK---KYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPW 295 (355)
T ss_pred EEeCCCCHHHHHHhcCccc---CCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEec
Confidence 6689887532211100000 1457889988887654 442 45655544 44577777665543 4567777888
Q ss_pred CCCcch----------HHHHHHHHhcCceEEEecCCCC
Q 021241 184 HPSWQQ----------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 184 ~~~~~~----------~~~~~~~~~~gi~via~~pl~~ 211 (315)
|+.... ..+.++.+++|+.+......|.
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 875421 2356677889999999888754
No 99
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=42.30 E-value=1.7e+02 Score=29.62 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=43.6
Q ss_pred HHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec-cCCHhHHHHHHHHcCCCCccc
Q 021241 101 RDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS-NFSTKKLGDLLEVACVPPAVN 179 (315)
Q Consensus 101 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~ 179 (315)
..+|.|++=+++...-.+. .+.+.+...+.+....-.+..+||- |-+.+.+.++.+.. .++++
T Consensus 20 ~~~gaD~iGfIf~~~SpR~--------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~--~ld~v 83 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRF--------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKN--GIDFV 83 (610)
T ss_pred HHcCCCEEEEEecCCCCCC--------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhc--CCCEE
Confidence 5689999999865532221 3444413333333333357789985 78888888887764 56899
Q ss_pred ccccCC
Q 021241 180 QVECHP 185 (315)
Q Consensus 180 q~~~~~ 185 (315)
|++-..
T Consensus 84 QLHG~e 89 (610)
T PRK13803 84 QLHGAE 89 (610)
T ss_pred EECCCC
Confidence 988543
No 100
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=42.20 E-value=67 Score=27.69 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=51.9
Q ss_pred cccccCCchhHHHHHHHHHHccCCEEeCCCCcC-CHHHHH--HHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHH
Q 021241 21 LGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYG-NEKEIG--LVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALD 97 (315)
Q Consensus 21 lGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~E~~lG--~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e 97 (315)
+-+...++++...+.+.+.++|..++=|+..|+ .-..++ +.+++.+ ++ -+-.|....-.+.+...+-++
T Consensus 124 lE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v------~~--~v~IKaaGGirt~~~a~~~i~ 195 (211)
T TIGR00126 124 IETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTV------GD--TIGVKASGGVRTAEDAIAMIE 195 (211)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHh------cc--CCeEEEeCCCCCHHHHHHHHH
Confidence 334445667778899999999999999998886 111111 2344431 22 234555444446778888888
Q ss_pred HHHHHcCCCc
Q 021241 98 RTLRDLQIDY 107 (315)
Q Consensus 98 ~SL~rLg~d~ 107 (315)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8889999864
No 101
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.09 E-value=1.8e+02 Score=25.76 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEeec---cCCHhHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GKARAIGVS---NFSTKKLG 166 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs---~~~~~~l~ 166 (315)
.-+..+-+.|.++|+++|++-+....... .+... .+...-++.++.+++. +.++...++ ......++
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~-----~~~~~----~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGS-----SLNYG----FAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCc-----ccccC----CCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 34556666799999999999865321100 00000 0111245566666443 346666664 23355666
Q ss_pred HHHHHcCCCCcccccccCCCc--chHHHHHHHHhcCceEEEe
Q 021241 167 DLLEVACVPPAVNQVECHPSW--QQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 167 ~~~~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~gi~via~ 206 (315)
.+.+. .++.+.+..+.-+ .-.+.+++++++|+.+...
T Consensus 93 ~a~~~---g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 93 MAADL---GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHc---CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 66553 2344444332222 2256888999999876654
No 102
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.07 E-value=1.7e+02 Score=27.40 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=60.7
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CeeEEeec--cCCHhHHHHHHHHcC-CCCccccccc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG----KARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G----~ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.++............ ..+++++++++.+....+ +++++=+. |.+.+++.++.+... .+..++-++|
T Consensus 211 iSL~a~~~e~r~~I~pink---~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPy 287 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNR---RYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPF 287 (349)
T ss_pred EeCCCCCHHHHHHhcCccc---CCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEec
Confidence 5688776532221100001 156788888888877654 24555555 455577877776653 3456777888
Q ss_pred CCCcc------h----HHHHHHHHhcCceEEEecCCCC
Q 021241 184 HPSWQ------Q----QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 184 ~~~~~------~----~~~~~~~~~~gi~via~~pl~~ 211 (315)
|+... . ..+.+..+++||.+......|.
T Consensus 288 n~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 288 NEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 87642 1 2456678889999999888754
No 103
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=41.97 E-value=2.4e+02 Score=24.77 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=84.0
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcCCHHHH--HHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEI--GLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ 104 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~l--G~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg 104 (315)
++++..+.++.+++.|++.|-.--.-..++.+ =+++++. -.+++.|.-... ...+.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~------~g~~~~l~vDan-~~~~~~~a~~~~-~~l~~~- 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA------VGDDAELRVDAN-RGWTPKQAIRAL-RALEDL- 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh------cCCCCEEEEeCC-CCcCHHHHHHHH-HHHHhc-
Confidence 34556667777888999988753221122222 1344443 123445544432 123322222211 233333
Q ss_pred CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCccccccc
Q 021241 105 IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVEC 183 (315)
Q Consensus 105 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~ 183 (315)
++.++..|... +-++.+.+|++.-.+. ..|=+-++...+.++++... ++++|+..
T Consensus 156 ----~i~~iEeP~~~------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v~~k~ 211 (265)
T cd03315 156 ----GLDYVEQPLPA------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAVNIKT 211 (265)
T ss_pred ----CCCEEECCCCc------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEEEEec
Confidence 45556655431 1246667777665544 44555577788888776543 47777776
Q ss_pred CCCcc---hHHHHHHHHhcCceEEEecCCC
Q 021241 184 HPSWQ---QQKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 184 ~~~~~---~~~~~~~~~~~gi~via~~pl~ 210 (315)
+..-- -..+...|+++|+.++..+.+.
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~ 241 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMIE 241 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 55432 3678889999999999887663
No 104
>PRK14017 galactonate dehydratase; Provisional
Probab=41.81 E-value=71 Score=30.07 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecCC
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~pl 209 (315)
++.+.+|++...+. ..|=|-++...+..+++... .+++|+..+..- ....+.+.|+++|+.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 46788888876665 66667788888988887643 477787765442 2367899999999999987654
No 105
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=41.44 E-value=2.6e+02 Score=25.65 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=50.7
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK 151 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 151 (315)
.++.+.++.|.....+ ...+.+.+++..+++|. ++.+ ..|.. .+.....+.++.+..+|
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G~---~v~~-~~~~~---------------~d~~~q~~~i~~li~~~- 80 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELGV---DVTY-DGPTE---------------PSVSGQVQLINNFVNQG- 80 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhCC---EEEE-ECCCC---------------CCHHHHHHHHHHHHHcC-
Confidence 4678888888743322 35788899999999984 4443 23322 23455668888988875
Q ss_pred eeEEeeccCCHhHHHHHH
Q 021241 152 ARAIGVSNFSTKKLGDLL 169 (315)
Q Consensus 152 ir~iGvs~~~~~~l~~~~ 169 (315)
+..|-++..+...+...+
T Consensus 81 vdgIiv~~~d~~al~~~l 98 (336)
T PRK15408 81 YNAIIVSAVSPDGLCPAL 98 (336)
T ss_pred CCEEEEecCCHHHHHHHH
Confidence 788888877755444333
No 106
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.33 E-value=2.3e+02 Score=25.25 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEeeccCCHhHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK-ARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|++.|.+-. |.. ..+.++..+.+.+.++ .+-.+.+..+.+.++.+.+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~-----------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~ 82 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAA-----------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVE 82 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCC-----------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHH
Confidence 345566669999999998873 432 2344555555555443 3445566777788888877
Q ss_pred HcCCCCcccccccCCC------cc--h------HHHHHHHHhcCceEEEec
Q 021241 171 VACVPPAVNQVECHPS------WQ--Q------QKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 171 ~~~~~~~~~q~~~~~~------~~--~------~~~~~~~~~~gi~via~~ 207 (315)
. +.+...+-+..|.. .. + .+++++++++|+.+...-
T Consensus 83 ~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 83 T-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred c-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4 33221111222211 11 1 356788999998765543
No 107
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.32 E-value=1.9e+02 Score=27.21 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=61.0
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHH-HHHcC---CeeEEeec--cCCHhHHHHHHHHcC-CCCccccccc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEA-LYDSG---KARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~~G---~ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.++............ ...+++++++++.+ +.+.| +|+++=+. |.+.+++.++.+... ....++-++|
T Consensus 238 iSL~a~~~e~r~~i~P~~~--~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpy 315 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAA--RDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDY 315 (368)
T ss_pred EEecCCCHHHHHHhccccC--CCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeee
Confidence 5788876543221110000 01578999999986 45556 35566555 455556777766653 3456677788
Q ss_pred CCCcch----------HHHHHHHHhcCceEEEecCCCC
Q 021241 184 HPSWQQ----------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 184 ~~~~~~----------~~~~~~~~~~gi~via~~pl~~ 211 (315)
|++... ....+..+++|+.+......|.
T Consensus 316 n~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 316 NSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 876542 3466778889999999888743
No 108
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=41.20 E-value=1.7e+02 Score=28.79 Aligned_cols=142 Identities=12% Similarity=0.123 Sum_probs=75.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCC
Q 021241 52 YGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENL 131 (315)
Q Consensus 52 Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 131 (315)
+|+++.|-++|.+..+.. +.+-++|.|-+-. +-+-..++...++++.+.++++.++.|.......
T Consensus 67 ~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC~s-----elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~-------- 131 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF--KPDLIVVTPSCTS-----SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN-------- 131 (511)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEEeCCChH-----HHhccCHHHHHHHhccCCCcEEEecCCCcccchh--------
Confidence 788888888888764433 3444556555422 2222334444445554468899999886542110
Q ss_pred CCCCHHHHHHHHHH-H----------HHcCCeeEEeeccC------CHhHHHHHHHHcCCCCcccccc------------
Q 021241 132 DKPDIPSTWKAMEA-L----------YDSGKARAIGVSNF------STKKLGDLLEVACVPPAVNQVE------------ 182 (315)
Q Consensus 132 ~~~~~~~~~~~L~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~~~q~~------------ 182 (315)
.....+++++-+ + .+.++|--||.++. +...+.++++..++++.++-..
T Consensus 132 --~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~ 209 (511)
T TIGR01278 132 --QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPA 209 (511)
T ss_pred --HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhccc
Confidence 112222222211 1 13456888998763 4467788888776533222101
Q ss_pred --cCCC-cch--HHHHHHH-HhcCceEEEecCCC
Q 021241 183 --CHPS-WQQ--QKLREFC-KSKGVHLSGYSPLG 210 (315)
Q Consensus 183 --~~~~-~~~--~~~~~~~-~~~gi~via~~pl~ 210 (315)
+|+. .++ ..+.++. ++.|+.++...|+|
T Consensus 210 A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 210 AWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred CcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 1221 111 1233444 35599998878884
No 109
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=41.11 E-value=3.2e+02 Score=25.88 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhc-CC--CCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFED-AV--VKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ 104 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~-~~--~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg 104 (315)
+.+..+.|+.++++|+- ...|++++.. +++.+++++ +. ++.+.++.+. .+...+...++.|
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~-~ai~~w~~~r~~~~i~~e~i~~~p----------~VVpgi~~~I~~~- 103 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELY-AAIAHWFKQRHQWEIKPEWIVFVP----------GVVPGISLAIRAL- 103 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHH-HHHHHHHHHhcCCCCCcceEEEcC----------cchHhHHHHHHHh-
Confidence 46788999999999963 2335555433 333333221 11 1233333222 3444555555555
Q ss_pred CCccceEeecCCCC
Q 021241 105 IDYLDLYLMHWPVK 118 (315)
Q Consensus 105 ~d~iDl~~lH~p~~ 118 (315)
|+.=|-+.++.|..
T Consensus 104 T~~gd~Vvi~tPvY 117 (388)
T COG1168 104 TKPGDGVVIQTPVY 117 (388)
T ss_pred CcCCCeeEecCCCc
Confidence 35668888887765
No 110
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.01 E-value=1.8e+02 Score=24.58 Aligned_cols=148 Identities=10% Similarity=0.099 Sum_probs=74.5
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI 105 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~ 105 (315)
.+.+++.++++.+++.|+...|.- +..+..++... .+. ..+++++++-=. ...+.+++.+..-...+..
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~-----~~~l~p~m~~i-G~~-w~~gei~va~~~----~a~~~~~~~l~~l~~~~~~ 77 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI-----EKGLMAGMGVV-GKL-FEDGELFLPHVM----MSADAMLAGIKVLTPEMEK 77 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHHH-HHH-HcCCCccHHHHH----HHHHHHHHHHHHHHHHhhc
Confidence 466788999999999998766653 33344444332 000 123444431110 1122344444443333331
Q ss_pred C----ccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHHHHcCCCCcccc
Q 021241 106 D----YLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSNFSTKKLGDLLEVACVPPAVNQ 180 (315)
Q Consensus 106 d----~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q 180 (315)
. .---+++=.+.. + ...-...=.-.-|+..| .|.++|. +-+.+.+.+.+.. .+|+++.
T Consensus 78 ~~~~~~~~~vv~~t~~g-----------d---~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~--~~pd~v~ 140 (197)
T TIGR02370 78 AVETEVLGKVVCGVAEG-----------D---VHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK--EKPLMLT 140 (197)
T ss_pred cccCCCCCeEEEEeCCC-----------c---hhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH--cCCCEEE
Confidence 1 000111111110 1 22233333444556678 5888985 4455566555554 4678888
Q ss_pred cccCCCcch---HHHHHHHHhcCc
Q 021241 181 VECHPSWQQ---QKLREFCKSKGV 201 (315)
Q Consensus 181 ~~~~~~~~~---~~~~~~~~~~gi 201 (315)
+.++..... .++++.+++.|.
T Consensus 141 lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 141 GSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred EccccccCHHHHHHHHHHHHHcCC
Confidence 777655443 567888888753
No 111
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.79 E-value=3.1e+02 Score=25.60 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=85.2
Q ss_pred CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC-CCccceEeecCCCCccCCCCCCCCCCCC
Q 021241 54 NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ-IDYLDLYLMHWPVKMKKGSVGFKPENLD 132 (315)
Q Consensus 54 ~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 132 (315)
+-..+-++++.....-.+....+.|+|= + .+..+++-.+.-+++|| .+....+-||.++.............
T Consensus 163 n~~~v~~~i~~l~~~~~i~~r~itvST~-G----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~-- 235 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGIGQRRITVSTV-G----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKN-- 235 (345)
T ss_pred CHHHHHHHHHHHhcccCCccCceEEECC-C----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccC--
Confidence 4455566666542211134456777772 2 12234444444444443 34457788998876432221111111
Q ss_pred CCCHHHHHHHHHH-HHHcCC---eeEEeec--cCCHhHHHHHHHHcC-CCCcccccccCCCcch----------HHHHHH
Q 021241 133 KPDIPSTWKAMEA-LYDSGK---ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVECHPSWQQ----------QKLREF 195 (315)
Q Consensus 133 ~~~~~~~~~~L~~-l~~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~ 195 (315)
.+++++++++.+ +.+.|+ ++++=|. |.+.++++++.+... .+..++-++||++... ..+.+.
T Consensus 236 -~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~ 314 (345)
T PRK14457 236 -YPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRV 314 (345)
T ss_pred -CCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 567888888866 455663 5666665 455677777766543 3456777888876421 235666
Q ss_pred HHhcCceEEEecCCCC
Q 021241 196 CKSKGVHLSGYSPLGS 211 (315)
Q Consensus 196 ~~~~gi~via~~pl~~ 211 (315)
.+++|+.+......|.
T Consensus 315 L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 315 LEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHCCCeEEEeCCCCC
Confidence 7788999888777743
No 112
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=40.73 E-value=1.1e+02 Score=23.77 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC---CccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI---DYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD 148 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 148 (315)
+|=-+.|+-|++........+++.+.+..+.+.. ...|++++-.+.... .+..++.+.|..|.+
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~-------------~~~~~l~~~l~~ll~ 113 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE-------------CNYEQFLQELEQLLI 113 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc-------------CCHHHHHHHHHHHHH
Confidence 3444666667655556778899999999887643 357999998776532 667888888888776
Q ss_pred c
Q 021241 149 S 149 (315)
Q Consensus 149 ~ 149 (315)
.
T Consensus 114 k 114 (122)
T PRK03031 114 Q 114 (122)
T ss_pred H
Confidence 5
No 113
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=40.63 E-value=2.1e+02 Score=26.74 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=70.4
Q ss_pred CchhHHHHHHHHHHc---cCCEEeCCCCcCC-HHHHHHHHHhhhhcCCCCCCceEEEeccCC--CCCCCCcHHHHHHHHH
Q 021241 27 DPGVVGNAVAAAIKA---GYRHIDCAQIYGN-EKEIGLVLKKFFEDAVVKREDLWITSKLWN--AYHEPEDVPEALDRTL 100 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~---Gi~~~DTA~~Yg~-E~~lG~al~~~~~~~~~~R~~v~i~tK~~~--~~~~~~~i~~~~e~SL 100 (315)
+.++..+++....+. =+-.+|..+..++ -..+-+.+. .+.-++|.+|+-- .....+.+.+.+.+.+
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--------~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--------GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--------CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 445666666655432 2456786555543 111112221 3556889999732 1222344555566667
Q ss_pred HHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHH
Q 021241 101 RDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDL 168 (315)
Q Consensus 101 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 168 (315)
+.+|....+++.+-.-.. ..+.++++.|.++.+.+.|--+|.+|..-..+-..
T Consensus 121 k~~g~~~~~i~~vSAk~g---------------~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKG---------------NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred HHcCCCcCcEEEecCCCC---------------CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 777765446655532211 56888999998887777899999999987665443
No 114
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=40.09 E-value=1e+02 Score=30.52 Aligned_cols=76 Identities=16% Similarity=0.064 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
.+..++.+.+.+.++..+|+.||+-.+...++...++.++++++.+--.|.-+...-.-++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 5678899999999999999999999999999999999888775544323332222233444455555555555554
No 115
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=39.77 E-value=1.1e+02 Score=28.35 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEec
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~ 207 (315)
++.+.+|++..-+. ..|=|.++...+..+++... .+++|+.....- ....+.+.|+++|+.++.++
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 67788887765544 55666678888888776533 467777654332 23578888999999988665
No 116
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=39.57 E-value=3.1e+02 Score=25.23 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=72.7
Q ss_pred cCCchhHHHHHHHHHHccCCEEe----------CCCCcCC-----HHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCC
Q 021241 25 QSDPGVVGNAVAAAIKAGYRHID----------CAQIYGN-----EKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEP 89 (315)
Q Consensus 25 ~~~~~~~~~~l~~Al~~Gi~~~D----------TA~~Yg~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~ 89 (315)
..++++..+..+.+.+.|+..|| +...||+ -+.+.+.++...+ .-++-|+.|+.....+.
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~-----~~~~PVsvKiR~g~~~~ 137 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQE-----AVNIPVTVKHRIGIDPL 137 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHH-----HhCCCeEEEEecCCCCc
Confidence 35677777777777788999999 5566773 4556666665411 12355778874321111
Q ss_pred CcHH--HHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeecc-CCHhHH
Q 021241 90 EDVP--EALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSN-FSTKKL 165 (315)
Q Consensus 90 ~~i~--~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l 165 (315)
+... ..+-+.|+..| +|.+.+|.-.....+ ++........ .--|+...++++.- .|--||..+ ++.+.+
T Consensus 138 ~~~~~~~~~~~~l~~~G---~~~itvHgRt~~~qg---~sg~~~~~~~-~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da 210 (318)
T TIGR00742 138 DSYEFLCDFVEIVSGKG---CQNFIVHARKAWLSG---LSPKENREIP-PLRYERVYQLKKDFPHLTIEINGGIKNSEQI 210 (318)
T ss_pred chHHHHHHHHHHHHHcC---CCEEEEeCCchhhcC---CCccccccCC-chhHHHHHHHHHhCCCCcEEEECCcCCHHHH
Confidence 2112 23333445555 788899965421111 1000000011 12467777777764 677777665 555666
Q ss_pred HHHHH
Q 021241 166 GDLLE 170 (315)
Q Consensus 166 ~~~~~ 170 (315)
.+.+.
T Consensus 211 ~~~l~ 215 (318)
T TIGR00742 211 KQHLS 215 (318)
T ss_pred HHHHh
Confidence 66653
No 117
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=39.56 E-value=3.5e+02 Score=25.94 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=80.9
Q ss_pred CchhHHHHHHHHHHccCC-EEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEec-------------cCCCCCCCCcH
Q 021241 27 DPGVVGNAVAAAIKAGYR-HIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSK-------------LWNAYHEPEDV 92 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK-------------~~~~~~~~~~i 92 (315)
+.+.-.+-++.|++.|-. ..|-+. .|.-..+-+.+-+ ...+-|.|= -...+.+++.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~--------~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~ 145 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIE--------ASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDL 145 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHH--------cCCCCCcChhHHHHHHHHHhcCCChhhCCHHHH
Confidence 444445667899999976 446543 3443333333222 111222111 01234566777
Q ss_pred HHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHc
Q 021241 93 PEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVA 172 (315)
Q Consensus 93 ~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 172 (315)
.+.+++-.+ |-+|.+-+|.- -..+.++.++++|+ ..|+-+-.-.-+...+...
T Consensus 146 ~~~ie~qa~----~GVDfmTiHcG---------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n 198 (431)
T PRK13352 146 FDVIEKQAK----DGVDFMTIHCG---------------------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN 198 (431)
T ss_pred HHHHHHHHH----hCCCEEEEccc---------------------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc
Confidence 777776655 56888999952 23578889998884 6677776666665554432
Q ss_pred CCCCcccccccCCCcch-HHHHHHHHhcCceEEE
Q 021241 173 CVPPAVNQVECHPSWQQ-QKLREFCKSKGVHLSG 205 (315)
Q Consensus 173 ~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~via 205 (315)
+ .-||+... .++++.|+++++.+--
T Consensus 199 ~--------~ENPlye~fD~lLeI~~~yDVtlSL 224 (431)
T PRK13352 199 N--------KENPLYEHFDYLLEILKEYDVTLSL 224 (431)
T ss_pred C--------CcCchHHHHHHHHHHHHHhCeeeec
Confidence 1 33666655 7899999999998754
No 118
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.34 E-value=2.8e+02 Score=25.84 Aligned_cols=98 Identities=10% Similarity=0.116 Sum_probs=60.6
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---eeEEeec--cCCHhHHHHHHHHcC-CCCccccccc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GK---ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.|+............. .+++++++++.++.++ |+ ++|+=+. |.+.++++++.+... .+..++-++|
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~---~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPy 292 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEK---FPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPL 292 (342)
T ss_pred EEecCCChhhcceEeecccc---CCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEcc
Confidence 57898876543321111111 5678999999988744 32 3455554 455566666665543 3456777888
Q ss_pred CCCcch---------HHHHHHHHhcCceEEEecCCCC
Q 021241 184 HPSWQQ---------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 184 ~~~~~~---------~~~~~~~~~~gi~via~~pl~~ 211 (315)
|+.... ....+..+++||.+......|.
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 874321 3456678888999999888754
No 119
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=39.24 E-value=1.2e+02 Score=23.11 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=46.1
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC---CccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI---DYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD 148 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 148 (315)
+|=-+.|+-|++. ......+++.+.+.++.... ...|++++-.+.... .+..++-+.|..|.+
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~-------------~~~~~l~~~l~~ll~ 103 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE-------------LDYKEIKKSLIHVLK 103 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc-------------CCHHHHHHHHHHHHH
Confidence 4555777777765 56678899999988887643 357999888776432 667788888777765
Q ss_pred c
Q 021241 149 S 149 (315)
Q Consensus 149 ~ 149 (315)
.
T Consensus 104 k 104 (114)
T PRK00499 104 L 104 (114)
T ss_pred H
Confidence 4
No 120
>PRK09061 D-glutamate deacylase; Validated
Probab=38.96 E-value=3.2e+02 Score=26.87 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccCCEEeCCCCcC---CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCC-CCCcHHHHHHHHHHHcCCC
Q 021241 31 VGNAVAAAIKAGYRHIDCAQIYG---NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYH-EPEDVPEALDRTLRDLQID 106 (315)
Q Consensus 31 ~~~~l~~Al~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~-~~~~i~~~~e~SL~rLg~d 106 (315)
..++++.|++.|+..|=+...|- +...+-+.++.. .+-+..|.+.+..... ++.....++++.++....-
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHh
Confidence 56678889999999997765562 444555555543 3456677777633221 2222334455554433322
Q ss_pred ccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCC
Q 021241 107 YLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFS 161 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (315)
-.-+...|--.... ....+.++.+++++++|.--..-++-|.
T Consensus 245 G~rv~IsHlss~g~-------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 245 GAHMHICHVNSTSL-------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred CCCEEEEeeccCCc-------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 23466667432211 3468889999999999954444444333
No 121
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=38.75 E-value=46 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=35.4
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcC-CHHHHHHHHHhh
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYG-NEKEIGLVLKKF 65 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~E~~lG~al~~~ 65 (315)
.+.+.-.+++...++.|.+.-+.|..|| +...|.+|.+.+
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5566667888899999999999999999 899999999986
No 122
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=38.45 E-value=2.2e+02 Score=24.52 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHcCCCccceEeec-CCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEeec-cCCHhHHHHHHHHcCCCC
Q 021241 100 LRDLQIDYLDLYLMH-WPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK-ARAIGVS-NFSTKKLGDLLEVACVPP 176 (315)
Q Consensus 100 L~rLg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~ 176 (315)
...+|.||+=+++.- .|.. .+. +...++.+... +..+||. |.+.+.+.++++. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~---------------Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~--~~l 76 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRY---------------VSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEE--LGL 76 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCc---------------CCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh--cCC
Confidence 346899999887765 3332 333 34444444443 8899987 5667788888776 466
Q ss_pred cccccccCCCcchHHHHHHHHhc-CceEEEe
Q 021241 177 AVNQVECHPSWQQQKLREFCKSK-GVHLSGY 206 (315)
Q Consensus 177 ~~~q~~~~~~~~~~~~~~~~~~~-gi~via~ 206 (315)
+++|++-. -..+.++..++. ++.|+-.
T Consensus 77 d~VQlHG~---e~~~~~~~l~~~~~~~v~ka 104 (208)
T COG0135 77 DAVQLHGD---EDPEYIDQLKEELGVPVIKA 104 (208)
T ss_pred CEEEECCC---CCHHHHHHHHhhcCCceEEE
Confidence 99998744 224455555544 3555543
No 123
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.22 E-value=2.6e+02 Score=24.02 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=86.2
Q ss_pred CCchhHHHHHHHHHHccCCEEeCC-CCcCC--HHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHH
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCA-QIYGN--EKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRD 102 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA-~~Yg~--E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~r 102 (315)
++.++..++++...++||..|+.. +..+. .+.+-+..+.. +...+...+. ...+.++..++ .++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~-----~~~~~i~~~~~-~~~~ 78 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL------PNARLQALCR-----ANEEDIERAVE-AAKE 78 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH------HSSEEEEEEE-----SCHHHHHHHHH-HHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh------cccccceeee-----ehHHHHHHHHH-hhHh
Confidence 566788899999899999999999 33331 33343333322 2333332222 22344555554 3357
Q ss_pred cCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc---CCHhHHHHHHHHcC-CCCcc
Q 021241 103 LQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN---FSTKKLGDLLEVAC-VPPAV 178 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~~~~~~-~~~~~ 178 (315)
.|.+.+.++.-=++...... ...+. ....+.+.+..+..++.|.-..++... ++++.+.++.+... ..++.
T Consensus 79 ~g~~~i~i~~~~s~~~~~~~-~~~~~----~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 79 AGIDIIRIFISVSDLHIRKN-LNKSR----EEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp TTSSEEEEEEETSHHHHHHH-TCSHH----HHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SE
T ss_pred ccCCEEEecCcccHHHHHHh-hcCCH----HHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeE
Confidence 88888777643221000000 00000 011445556677778899988888754 45555554444321 23344
Q ss_pred cccccC--CCcch--HHHHHHHHh----cCceEEEecCCC
Q 021241 179 NQVECH--PSWQQ--QKLREFCKS----KGVHLSGYSPLG 210 (315)
Q Consensus 179 ~q~~~~--~~~~~--~~~~~~~~~----~gi~via~~pl~ 210 (315)
+.+.=+ .+.|. .+++...++ -.+++.++.-++
T Consensus 154 i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 154 IYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp EEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred EEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 433322 22232 355665554 347777777773
No 124
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=38.11 E-value=3.2e+02 Score=25.10 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=106.6
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcCC---------HHHHHHHHHhhhhcCCCCCCceEEEe-----ccCCC--------
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYGN---------EKEIGLVLKKFFEDAVVKREDLWITS-----KLWNA-------- 85 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~~~~~~R~~v~i~t-----K~~~~-------- 85 (315)
++-..++-+..|++|.+.+-|...+.+ ++..-+..+..++-...-|+.+..-+ -+++.
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 455667777899999999999765542 11111222221111111344444322 33221
Q ss_pred --------CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEee
Q 021241 86 --------YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGV 157 (315)
Q Consensus 86 --------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 157 (315)
..+.+.+.+..++.|+.+.-.-+|++.+...... ..-..+++.|+++ .-.+=-+|++
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~--------------~EA~a~l~~l~~~-~~~~p~~is~ 196 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNV--------------AEAKAALELLQEL-GPSKPFWISF 196 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCH--------------HHHHHHHHHHHhc-CCCCcEEEEE
Confidence 1233557788888888887667999999864332 1123333444443 0222335665
Q ss_pred ccCC------HhHHHHHHHHcCCC--CcccccccCCCcch-HHHHHHH-HhcCceEEEecCCCCCCCCCCCCccCCChHH
Q 021241 158 SNFS------TKKLGDLLEVACVP--PAVNQVECHPSWQQ-QKLREFC-KSKGVHLSGYSPLGSPGTTWIKSDVLKHPVV 227 (315)
Q Consensus 158 s~~~------~~~l~~~~~~~~~~--~~~~q~~~~~~~~~-~~~~~~~-~~~gi~via~~pl~~gg~~~~~~~~~~~~~l 227 (315)
+..+ .+.+++++...+-. +..+=+++...... .-+.+.. +-.++.+++|. .++.-.-..+..+...
T Consensus 197 t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvYP-NsGe~yd~~~g~~~~~--- 272 (317)
T KOG1579|consen 197 TIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVYP-NSGEVYDNEKGGWIPT--- 272 (317)
T ss_pred EecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchhccHHHHHHhhccCCCeEEEec-CCCCCCccccCcccCC---
Confidence 5433 23445554444322 33333333332222 2233333 56688899884 4221111111111111
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcCCeeecCC--CCHHHHHHhhccCC
Q 021241 228 NMVAEKLGKTPAQVCLRWGLQMGNSLLPKS--TNEVRMKENLDVFD 271 (315)
Q Consensus 228 ~~la~~~~~s~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 271 (315)
..+..+-+--.+...+.++.+|=|. ++|.|+++..++++
T Consensus 273 -----~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v~ 313 (317)
T KOG1579|consen 273 -----PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAVK 313 (317)
T ss_pred -----CcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHhh
Confidence 1122222222333344466666666 78888888766543
No 125
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=37.67 E-value=67 Score=29.94 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCC---cchHHHHHHHHhcCceEEEe
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPS---WQQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~via~ 206 (315)
++.+.+|+++..+. ..|=|-++...+..+++... ++++|+..... ..-..+..+|+++|+.++..
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~--~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGA--ADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCC--CCeEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 34445555443333 33334444455555544322 24444433322 11134555566666655543
No 126
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=37.63 E-value=3.2e+02 Score=24.94 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=80.7
Q ss_pred chhHHHHHHHHHHcc-CC--EEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccC---------CCCCCCCcHHHH
Q 021241 28 PGVVGNAVAAAIKAG-YR--HIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLW---------NAYHEPEDVPEA 95 (315)
Q Consensus 28 ~~~~~~~l~~Al~~G-i~--~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~---------~~~~~~~~i~~~ 95 (315)
++...++++...+.+ +. .+.|-+.+-.++.+.. +++. | -+-.|.|..-.+ ...++.+.+.++
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~-l~~a---G--~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~a 160 (313)
T TIGR01210 87 KETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE-LRKI---G--VNVEVAVGLETANDRIREKSINKGSTFEDFIRA 160 (313)
T ss_pred HHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH-HHHc---C--CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHH
Confidence 344556666666655 32 3444444445655544 5543 3 111344432221 123456677777
Q ss_pred HHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHh---HHHHHHHHc
Q 021241 96 LDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTK---KLGDLLEVA 172 (315)
Q Consensus 96 ~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~---~l~~~~~~~ 172 (315)
++. +++.|.. +-.+++-.+...... ...++..+.++.+.+-+ .++.+....+. .+.++.+..
T Consensus 161 i~~-~~~~Gi~-v~~~~i~G~P~~se~-----------ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~~~~G 225 (313)
T TIGR01210 161 AEL-ARKYGAG-VKAYLLFKPPFLSEK-----------EAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFLWNRG 225 (313)
T ss_pred HHH-HHHcCCc-EEEEEEecCCCCChh-----------hhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHHHHcC
Confidence 775 4556875 666666554321111 34566666777777665 67777665532 445554443
Q ss_pred CCCCcccccccCCCc--chHHHHHHHHhcCceEEEecCCCC
Q 021241 173 CVPPAVNQVECHPSW--QQQKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 173 ~~~~~~~q~~~~~~~--~~~~~~~~~~~~gi~via~~pl~~ 211 (315)
. |.+.+ ...+++..+++.++.|+. -|.+.
T Consensus 226 ~---------~~pp~lws~~e~l~e~~~~~~~~~~-d~~g~ 256 (313)
T TIGR01210 226 L---------YRPPWLWSVAEVLKEAKKIGAEVLS-DPVGA 256 (313)
T ss_pred C---------CCCCCHHHHHHHHHHHHhhCCeEEe-cCCCC
Confidence 2 33322 235778888877876665 56654
No 127
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=37.62 E-value=3.3e+02 Score=24.98 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEeeccC---CHhHHHHHHHH
Q 021241 96 LDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKAR-AIGVSNF---STKKLGDLLEV 171 (315)
Q Consensus 96 ~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~---~~~~l~~~~~~ 171 (315)
.+...++.|. |++.+|-.+.... ....+..|..+.|+++.+.=+|- -||=|.. ++..++++.+.
T Consensus 156 Ark~Vk~fga---dmvTiHlIsTdPk---------i~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEv 223 (403)
T COG2069 156 ARKCVKKFGA---DMVTIHLISTDPK---------IKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEV 223 (403)
T ss_pred HHHHHHHhCC---ceEEEEeecCCcc---------ccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHh
Confidence 3455678885 6777774432110 11177899999999999987764 5677764 45677777776
Q ss_pred cCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCC
Q 021241 172 ACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 172 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~ 210 (315)
+... .+.-...|+-..-..+.+.+.++|-.|++|+++.
T Consensus 224 aEGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 224 AEGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred hcCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccC
Confidence 6421 1222222332233678999999999999999994
No 128
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=37.58 E-value=3.3e+02 Score=25.07 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=83.7
Q ss_pred cCCchhHHHHHHHHHHccCCEEeC----------CCCcC-----CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCC
Q 021241 25 QSDPGVVGNAVAAAIKAGYRHIDC----------AQIYG-----NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEP 89 (315)
Q Consensus 25 ~~~~~~~~~~l~~Al~~Gi~~~DT----------A~~Yg-----~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~ 89 (315)
..+++...+.-..+-+.|+..||- ...+| +...+.+.++...+.. + ++-|+.|+.......
T Consensus 75 gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av--~--~iPVTVKiRlG~d~~ 150 (323)
T COG0042 75 GSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAV--G--DIPVTVKIRLGWDDD 150 (323)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhh--C--CCCeEEEEecccCcc
Confidence 356677777778888999999983 33455 4777888877653332 2 677888873322222
Q ss_pred CcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEeecc-CCHhHHHH
Q 021241 90 EDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK-ARAIGVSN-FSTKKLGD 167 (315)
Q Consensus 90 ~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~-~~~~~l~~ 167 (315)
+.....+.+.++.-| +|.+.+|.-...... .-..-|+.+.++++.=. |.-||=.+ ++.+...+
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y------------~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~ 215 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGY------------LGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKE 215 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcC------------CCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHH
Confidence 234455666666776 688999976544322 11245777888877655 66666554 67788888
Q ss_pred HHHHcC
Q 021241 168 LLEVAC 173 (315)
Q Consensus 168 ~~~~~~ 173 (315)
.++..+
T Consensus 216 ~l~~tg 221 (323)
T COG0042 216 MLEYTG 221 (323)
T ss_pred HHHhhC
Confidence 888754
No 129
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=37.54 E-value=1.6e+02 Score=30.06 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=70.5
Q ss_pred HHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCc----ccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCC
Q 021241 143 MEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPA----VNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIK 218 (315)
Q Consensus 143 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~----~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~ 218 (315)
++.+....++..+-=++.+.+.+..+.+...-++. .+.+-+--..|+..+.+.|.+.++-++.-++=
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~--------- 217 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKN--------- 217 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCC---------
Confidence 34443345555555566676766666554321111 12222222234567888898888887763222
Q ss_pred CccCCChHHHHHHHHhCC------CHHHHHHHHHHhcC-CeeecCCCCHHHHHHh
Q 021241 219 SDVLKHPVVNMVAEKLGK------TPAQVCLRWGLQMG-NSLLPKSTNEVRMKEN 266 (315)
Q Consensus 219 ~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~en 266 (315)
--....|.++|++.|. ++.++.-.|.-... ..+..|+|+|+.+-+.
T Consensus 218 --SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 218 --SSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred --CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 1224689999999873 78899889987766 6788999999976543
No 130
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=37.45 E-value=3.4e+02 Score=25.17 Aligned_cols=91 Identities=18% Similarity=-0.015 Sum_probs=45.5
Q ss_pred CCceEEEeccCCCCCCC--CcHH--HHHHHHHHHcCCCccceE-eecC-CCCccCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021241 73 REDLWITSKLWNAYHEP--EDVP--EALDRTLRDLQIDYLDLY-LMHW-PVKMKKGSVGFKPENLDKPDIPSTWKAMEAL 146 (315)
Q Consensus 73 R~~v~i~tK~~~~~~~~--~~i~--~~~e~SL~rLg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 146 (315)
..++.|..|+...+... .... ..+-+-|+.+|+|+|++- -.|. +...... . .+........+++
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~-------~---~~~~~~~~~~~~i 271 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIAT-------S---VPRGAFAWATAKL 271 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc-------c---CCchhhHHHHHHH
Confidence 35777888876543221 1222 234456778888888772 2232 1111000 0 1111123344556
Q ss_pred HHcCCeeEEeecc-CCHhHHHHHHHHcC
Q 021241 147 YDSGKARAIGVSN-FSTKKLGDLLEVAC 173 (315)
Q Consensus 147 ~~~G~ir~iGvs~-~~~~~l~~~~~~~~ 173 (315)
++.=.+-=++... ++++.++++++...
T Consensus 272 k~~v~iPVi~~G~i~~~~~a~~~i~~g~ 299 (353)
T cd02930 272 KRAVDIPVIASNRINTPEVAERLLADGD 299 (353)
T ss_pred HHhCCCCEEEcCCCCCHHHHHHHHHCCC
Confidence 6554555555555 46777888777643
No 131
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=37.28 E-value=3.8e+02 Score=25.88 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=20.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCccceEeec
Q 021241 85 AYHEPEDVPEALDRTLRDLQIDYLDLYLMH 114 (315)
Q Consensus 85 ~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH 114 (315)
+..+.+.+++.++..+ +|+.++|++|.|.
T Consensus 225 PgqT~e~~~~~l~~~~-~l~~~~is~y~L~ 253 (449)
T PRK09058 225 PGQTPEIWQQDLAIVR-DLGLDGVDLYALN 253 (449)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEEeccc
Confidence 4455566666666554 4899999999876
No 132
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.19 E-value=3e+02 Score=24.37 Aligned_cols=104 Identities=12% Similarity=-0.001 Sum_probs=60.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHH-HHHHHHHHcCCeeEEeeccCCHhHH
Q 021241 87 HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTW-KAMEALYDSGKARAIGVSNFSTKKL 165 (315)
Q Consensus 87 ~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvs~~~~~~l 165 (315)
.+++.+.+..++.++ -|.|+||+=. .|.. .+..+-+ +.+..+++.-. .-|.|-+++++.+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~---------------~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~ 83 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG---------------LDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVI 83 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC---------------CCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHH
Confidence 345566666666654 5999999853 1211 2222223 22222222212 2478889999999
Q ss_pred HHHHHHcCCCCcccccccCCC-cchHHHHHHHHhcCceEEEecCC
Q 021241 166 GDLLEVACVPPAVNQVECHPS-WQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 166 ~~~~~~~~~~~~~~q~~~~~~-~~~~~~~~~~~~~gi~via~~pl 209 (315)
+++++.+.-...+|-+..... .+...+++.++++|..++.+..-
T Consensus 84 e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 84 EAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 999987422334444332221 12357889999999999987653
No 133
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.95 E-value=2.6e+02 Score=26.11 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=78.5
Q ss_pred CHHHHHHHHHhhhhc-CC-CCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCC
Q 021241 54 NEKEIGLVLKKFFED-AV-VKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENL 131 (315)
Q Consensus 54 ~E~~lG~al~~~~~~-~~-~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 131 (315)
+-..+-++++..-.. |. +...++.|+|=.. ...++ .|...+...+++ -||.+++............
T Consensus 170 n~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~---------~~~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~- 237 (354)
T PRK14460 170 NLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI---------EKGLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAAR- 237 (354)
T ss_pred CHHHHHHHHHHHhhhhccCCCCCeEEEECCCC---------hHHHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCcccc-
Confidence 445555676653111 21 1233577777431 12233 455555544444 5787765422111000011
Q ss_pred CCCCHHHHHHHHHHHHHc-CC---eeEEeec--cCCHhHHHHHHHHcC-CCCcccccccCCCcch----------HHHHH
Q 021241 132 DKPDIPSTWKAMEALYDS-GK---ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVECHPSWQQ----------QKLRE 194 (315)
Q Consensus 132 ~~~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~ 194 (315)
.+++++++++.+...+ |+ |+++=+. |.+.+++.++.+... .+..++-++||+.... ....+
T Consensus 238 --~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~ 315 (354)
T PRK14460 238 --WPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEK 315 (354)
T ss_pred --CCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 4788899888876543 32 4444444 555567777766553 4456777888875321 23566
Q ss_pred HHHhcCceEEEecCCCC
Q 021241 195 FCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 195 ~~~~~gi~via~~pl~~ 211 (315)
..+++|+.+......|.
T Consensus 316 ~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 316 YLWSKGITAIIRKSKGQ 332 (354)
T ss_pred HHHHCCCeEEEeCCCCC
Confidence 77888999988877743
No 134
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.86 E-value=1.4e+02 Score=25.81 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (315)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+-.+++......++...+
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~--------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~ 74 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS--------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERAVE 74 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS--------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC--------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHH
Confidence 445566667999999999998 22111 1123334444444445 5555666677777776544
Q ss_pred ---HcCCCCcccccccCCCc--------------chHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHH
Q 021241 171 ---VACVPPAVNQVECHPSW--------------QQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEK 233 (315)
Q Consensus 171 ---~~~~~~~~~q~~~~~~~--------------~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~ 233 (315)
..+.+...+-...|... .-.+.++++++.|..+ .+++-.. .....+.+.+++++
T Consensus 75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~~~--------~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCEDA--------SRTDPEELLELAEA 145 (237)
T ss_dssp HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEETTT--------GGSSHHHHHHHHHH
T ss_pred hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCcccc--------ccccHHHHHHHHHH
Confidence 23332222222333311 1146789999999999 4343322 12223344444322
Q ss_pred hCCCHHHHHHHHHHhcC-C-ee---ecCCCCHHHHHHhhccCC
Q 021241 234 LGKTPAQVCLRWGLQMG-N-SL---LPKSTNEVRMKENLDVFD 271 (315)
Q Consensus 234 ~~~s~aq~al~~~l~~~-~-~~---i~g~~~~~~l~enl~a~~ 271 (315)
+...+ . .. -.|.-+|.++.+.+..+.
T Consensus 146 ------------~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 146 ------------LAEAGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp ------------HHHHT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred ------------HHHcCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 22224 2 22 257788888877776543
No 135
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=36.85 E-value=77 Score=29.31 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEe
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~ 206 (315)
++.+.+|++...|. ..|=|.++...+.++++... .+++|+..+..- ....+...|+++|+.++.+
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a--~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA--VDILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 56677777776665 56666678888888877542 477776655432 2357888888999887654
No 136
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=36.67 E-value=2.6e+02 Score=23.52 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=25.2
Q ss_pred ccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhH
Q 021241 107 YLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKK 164 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (315)
.+|.+|||..+. .+....+.+......++.+|+++.....
T Consensus 73 ~~d~Vqlhg~e~------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 73 GLDVVQLHGDES------------------PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCCEEEECCCCC------------------HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 378999996431 2233444443345689999999876544
No 137
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.40 E-value=3.4e+02 Score=26.14 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=82.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCC-CceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKR-EDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPE 129 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R-~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-++|.+..+.. ++ +-++|.|=+.. ...-+++..-+++.-++++ +.++.+|.|........
T Consensus 98 V~Gg~~~L~~aI~~~~~~~--~p~~~I~V~~tC~~-~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~----- 166 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTEF--PLIKAISVYATCPT-GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQS----- 166 (443)
T ss_pred eeCcHHHHHHHHHHHHHhC--CccceEEEECCChH-HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccc-----
Confidence 5788888889998875543 44 55677766533 3445666666666555655 78999998875421100
Q ss_pred CCCCCCHHHHHHH-HHHHH--------HcCCeeEEeeccC--CHhHHHHHHHHcCCCCcccccc--------------cC
Q 021241 130 NLDKPDIPSTWKA-MEALY--------DSGKARAIGVSNF--STKKLGDLLEVACVPPAVNQVE--------------CH 184 (315)
Q Consensus 130 ~~~~~~~~~~~~~-L~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~--------------~~ 184 (315)
.-.....++ ++.++ ++++|--||-.++ +.+.+.++++..++++...-.. +|
T Consensus 167 ----~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~ln 242 (443)
T TIGR01862 167 ----KGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLN 242 (443)
T ss_pred ----hHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEE
Confidence 112223332 33343 2467888885554 3357888888877544321111 12
Q ss_pred CC-cch--HHHHHHH-HhcCceEEEecCC
Q 021241 185 PS-WQQ--QKLREFC-KSKGVHLSGYSPL 209 (315)
Q Consensus 185 ~~-~~~--~~~~~~~-~~~gi~via~~pl 209 (315)
+. .+. ....++. ++.|+.++...|+
T Consensus 243 iv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 243 LVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred EEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 21 111 1233444 4669999988775
No 138
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=36.39 E-value=3.4e+02 Score=25.99 Aligned_cols=111 Identities=10% Similarity=0.052 Sum_probs=65.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN 130 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.++.|-++|++..+.. +.+-++|.|-+.. ..--+++..-+++. ++++ ++++.+|.|.......
T Consensus 67 V~Gg~~kL~~~I~~~~~~~--~p~~I~V~ttC~~-~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~------- 132 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII--DADLFVVLTGCIA-EIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNY------- 132 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC--CCCEEEEEcCCcH-HHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccc-------
Confidence 5788888888888764442 4555667766532 33345566666655 5554 6899999887543210
Q ss_pred CCCCCHHHHHHHHHH-HH------HcCCeeEEeecc-------CCHhHHHHHHHHcCCCCcc
Q 021241 131 LDKPDIPSTWKAMEA-LY------DSGKARAIGVSN-------FSTKKLGDLLEVACVPPAV 178 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~-l~------~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~~ 178 (315)
.-...++++|-+ +. +.+.|--||..+ -+.+.+.++++..++++..
T Consensus 133 ---~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 133 ---AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred ---cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 223333444332 22 235688888643 2357888888887765433
No 139
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=36.34 E-value=3.7e+02 Score=25.28 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN 130 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.|+.|-+++++..+.. +.+-++|.|-+- ...--+++..-+++.-++.+ +.++.+|.|.......
T Consensus 68 V~Gg~~~L~~~i~~~~~~~--~P~~i~v~~tC~-~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------- 134 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF--PPKAIFVYSTCP-TGLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQ------- 134 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC--CCCEEEEECCCc-hhhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcc-------
Confidence 4788888889988865443 344466666653 33444566666665555554 7899999876532110
Q ss_pred CCCCCHHHHHHHHHHHH---------HcCCeeEEeeccCC--HhHHHHHHHHcCCC
Q 021241 131 LDKPDIPSTWKAMEALY---------DSGKARAIGVSNFS--TKKLGDLLEVACVP 175 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~l~---------~~G~ir~iGvs~~~--~~~l~~~~~~~~~~ 175 (315)
..-...++++|-+.. +++.|--||..++. ..++.++++..+++
T Consensus 135 --~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~ 188 (406)
T cd01967 135 --SLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIR 188 (406)
T ss_pred --cHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCE
Confidence 022444555544433 24568888877653 47788888877643
No 140
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=36.01 E-value=4e+02 Score=25.50 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=72.3
Q ss_pred CchhHHHHHHHHHHccCC-EEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEec--------c--CCCCCCCCcHHHH
Q 021241 27 DPGVVGNAVAAAIKAGYR-HIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSK--------L--WNAYHEPEDVPEA 95 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~-~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK--------~--~~~~~~~~~i~~~ 95 (315)
+.+.-.+-++.|++.|-. ..|-+ ..|.-..+-+.+-+ ...+-|.|= . ...+.+++.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~--------~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILD--------AVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHH--------cCCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 334445567899999975 45655 33443333333322 112222221 0 1234566777777
Q ss_pred HHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCC
Q 021241 96 LDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVP 175 (315)
Q Consensus 96 ~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 175 (315)
+++..+ |-+|.+-+|.- -..+.++.++++|+ ..|+-+-.-.-+...+...+
T Consensus 146 ie~qa~----dGVDfmTiH~G---------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~-- 196 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG---------------------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH-- 196 (423)
T ss_pred HHHHHH----hCCCEEEEccc---------------------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC--
Confidence 776654 55888999952 24578899999884 55666555444444333221
Q ss_pred CcccccccCCCcch-HHHHHHHHhcCceEE
Q 021241 176 PAVNQVECHPSWQQ-QKLREFCKSKGVHLS 204 (315)
Q Consensus 176 ~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi 204 (315)
.-||+... .++++.|+++++.+-
T Consensus 197 ------~ENPlye~fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 197 ------KENPLYKNFDYILEIAKEYDVTLS 220 (423)
T ss_pred ------CcCchHHHHHHHHHHHHHhCeeee
Confidence 12333333 446666666666543
No 141
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=35.94 E-value=94 Score=30.46 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=73.2
Q ss_pred HHHHHHHHccCCEEe--CCCCc---C-------CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCC-CCC---------
Q 021241 33 NAVAAAIKAGYRHID--CAQIY---G-------NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYH-EPE--------- 90 (315)
Q Consensus 33 ~~l~~Al~~Gi~~~D--TA~~Y---g-------~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~-~~~--------- 90 (315)
+-.+..-+.|+..+= ||-+| | .-+.+..+-++.+.. -.+.++||++-++...- .|.
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~--~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~ 183 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGG--DLAGKLFLTAGLGGMGGAQPLAATMAGGVG 183 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTT--S-TT-EEEEE--STTCCHHHHHHHHTT-EE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCC--CCcceEEEEecccccccchHHHHHhcCceE
Confidence 445666778887663 66555 2 234455555666543 36889999999865220 000
Q ss_pred -cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHH
Q 021241 91 -DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLL 169 (315)
Q Consensus 91 -~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 169 (315)
-++-.-.+.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-.+.+.++.
T Consensus 184 l~vEvd~~ri~kR~~~g~ld~~~---------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~ 242 (546)
T PF01175_consen 184 LIVEVDPSRIEKRLEQGYLDEVT---------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELV 242 (546)
T ss_dssp EEEES-HHHHHHHHHTTSSSEEE---------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHH
T ss_pred EEEEECHHHHHHHHhCCCeeEEc---------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHH
Confidence 0111223344788889999862 558999999999999999999999998889999888
Q ss_pred HHcCCCCc--cccccc
Q 021241 170 EVACVPPA--VNQVEC 183 (315)
Q Consensus 170 ~~~~~~~~--~~q~~~ 183 (315)
+.. +.|+ .-|...
T Consensus 243 ~~~-i~pDl~tDQTS~ 257 (546)
T PF01175_consen 243 ERG-IIPDLVTDQTSA 257 (546)
T ss_dssp HTT----SEE---SST
T ss_pred HcC-CCCCcccCCCcc
Confidence 764 4343 446665
No 142
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.86 E-value=2.1e+02 Score=23.95 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC--CeeEEeeccCCHhHHHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG--KARAIGVSNFSTKKLGDL 168 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~~~~~~l~~~ 168 (315)
.+.+.++ .+.+.|.|+|-+-....+... .....++.++++++.. .+. +++-..+....-+.
T Consensus 12 ~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~---------------~~~~~~~~v~~i~~~~~~~v~-v~lm~~~~~~~~~~ 74 (210)
T TIGR01163 12 RLGEEVK-AVEEAGADWIHVDVMDGHFVP---------------NLTFGPPVLEALRKYTDLPID-VHLMVENPDRYIED 74 (210)
T ss_pred HHHHHHH-HHHHcCCCEEEEcCCCCCCCC---------------CcccCHHHHHHHHhcCCCcEE-EEeeeCCHHHHHHH
Confidence 3334333 345677777666533332211 1113345566665543 333 66666665544433
Q ss_pred HHHcCCCCcccccccCCCcchHHHHHHHHhcCceEE
Q 021241 169 LEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLS 204 (315)
Q Consensus 169 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi 204 (315)
+... ..+.+|++..........++.+++.|+.+.
T Consensus 75 ~~~~--gadgv~vh~~~~~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 75 FAEA--GADIITVHPEASEHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred HHHc--CCCEEEEccCCchhHHHHHHHHHHcCCcEE
Confidence 3333 346666665443333456677777776543
No 143
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=35.73 E-value=1.4e+02 Score=27.21 Aligned_cols=126 Identities=18% Similarity=0.303 Sum_probs=65.4
Q ss_pred cCCchhHHHHHHHHHHccCCEEe----------CCCCcC-----CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCC-C
Q 021241 25 QSDPGVVGNAVAAAIKAGYRHID----------CAQIYG-----NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYH-E 88 (315)
Q Consensus 25 ~~~~~~~~~~l~~Al~~Gi~~~D----------TA~~Yg-----~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~-~ 88 (315)
..+++...+....+.+.|+..|| +...|| +-..+.+.++...+. -++-|+.|+..... +
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-----~~~pvsvKiR~g~~~~ 136 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-----VPIPVSVKIRLGWDDS 136 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH------SSEEEEEEESECT--
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-----cccceEEecccccccc
Confidence 34667777777777778999999 334566 356667776664222 12555666522212 2
Q ss_pred CCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc-CCHhHHHH
Q 021241 89 PEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN-FSTKKLGD 167 (315)
Q Consensus 89 ~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~ 167 (315)
++... .+-+.|+..| +|.+.+|.-..... .....-|+.+.++++.=.|--||=.+ ++.+.+.+
T Consensus 137 ~~~~~-~~~~~l~~~G---~~~i~vH~Rt~~q~------------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~ 200 (309)
T PF01207_consen 137 PEETI-EFARILEDAG---VSAITVHGRTRKQR------------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAER 200 (309)
T ss_dssp CHHHH-HHHHHHHHTT-----EEEEECS-TTCC------------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHH
T ss_pred hhHHH-HHHHHhhhcc---cceEEEecCchhhc------------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHH
Confidence 33333 3445666777 78999997543221 12255678888888776666665444 44455555
Q ss_pred HHHH
Q 021241 168 LLEV 171 (315)
Q Consensus 168 ~~~~ 171 (315)
.++.
T Consensus 201 ~~~~ 204 (309)
T PF01207_consen 201 MLEQ 204 (309)
T ss_dssp HCCC
T ss_pred HHHh
Confidence 5443
No 144
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=35.23 E-value=2.5e+02 Score=27.89 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHH-cCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 134 PDIPSTWKAMEALYD-SGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
.+.-+++.+|..+++ .++|.-||+.|.. ..+..+.+..+. .+.+..|+--..-...+..+++.|+.++.
T Consensus 81 ~s~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~--~i~~~~~~~~~e~~~~~~~l~~~G~~~vi 150 (526)
T TIGR02329 81 PTGFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNL--DIVQRSYVTEEDARSCVNDLRARGIGAVV 150 (526)
T ss_pred CChhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEE
Confidence 455678899988887 4688899988765 455566665444 44554444433336788889999999887
No 145
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.69 E-value=1.4e+02 Score=25.62 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc-CCHhHHHHHHHHcC
Q 021241 95 ALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN-FSTKKLGDLLEVAC 173 (315)
Q Consensus 95 ~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~ 173 (315)
.+-+.|-.-|+..+.+=+ +. ...++.+++++++..=-.||..+ .+.++++++++..
T Consensus 24 ~~~~al~~~Gi~~iEit~-~t---------------------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG- 80 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTL-RT---------------------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG- 80 (204)
T ss_pred HHHHHHHHcCCCEEEEeC-CC---------------------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-
Confidence 445566677776655533 11 33455666666654325688877 6678888887753
Q ss_pred CCCcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 174 VPPAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 174 ~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
-++. .+|. -+.+++++|+++|+.++.
T Consensus 81 A~Fi-----vsP~-~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 81 AQFI-----VSPG-LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCEE-----ECCC-CCHHHHHHHHHcCCcEEC
Confidence 3222 3332 256999999999998776
No 146
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=34.65 E-value=2.6e+02 Score=26.19 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=63.7
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec-------cCCHhHHHHHHHHcC-CCCcccccc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS-------NFSTKKLGDLLEVAC-VPPAVNQVE 182 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~-~~~~~~q~~ 182 (315)
+.||.|+...+.....-+.. .++++++++.+...+... +.|-+- |.+.++..++.+... ++..++-++
T Consensus 216 iSLHa~nd~lR~~L~Pink~---~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP 291 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKK---YPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIP 291 (349)
T ss_pred EecCCCCHHHHhhhhccccC---CCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEee
Confidence 57898876543322211222 678888888888876544 433332 566788888877764 455889999
Q ss_pred cCCCcch----------HHHHHHHHhcCceEEEecCCCC
Q 021241 183 CHPSWQQ----------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 183 ~~~~~~~----------~~~~~~~~~~gi~via~~pl~~ 211 (315)
||+..-. ....+...++||.+....+-+.
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 9987642 2356667788899888877743
No 147
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.49 E-value=4.2e+02 Score=25.30 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCC
Q 021241 53 GNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLD 132 (315)
Q Consensus 53 g~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 132 (315)
|+++.+-++|.+..+.. +.+-++|.|-+ ....--+++..-+++.-++++ +.++.+|.|.....
T Consensus 68 G~~~kL~~~I~~~~~~~--~p~~I~v~~tC-~~~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~----------- 130 (430)
T cd01981 68 GSQEKVVENITRKDKEE--KPDLIVLTPTC-TSSILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVN----------- 130 (430)
T ss_pred CcHHHHHHHHHHHHHhc--CCCEEEEeCCc-cHHHHhhCHHHHHHHhhhccC---CCeEEecCCCccch-----------
Confidence 45566666776654332 34445666654 233333455544444444443 67888998865421
Q ss_pred CCCHHHHHHHHHHHH-----------------HcCCeeEEeeccC------CHhHHHHHHHHcCCCCccccc--------
Q 021241 133 KPDIPSTWKAMEALY-----------------DSGKARAIGVSNF------STKKLGDLLEVACVPPAVNQV-------- 181 (315)
Q Consensus 133 ~~~~~~~~~~L~~l~-----------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~~~q~-------- 181 (315)
.....-.+++.+. ++.+|--||.++. +.+.+.++++..++++.++-.
T Consensus 131 --~~~g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i 208 (430)
T cd01981 131 --ELQAADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDL 208 (430)
T ss_pred --HHHHHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHH
Confidence 1112222332222 2356888888753 346777888877654432111
Q ss_pred ------ccCCCcch---HHHHHHH-HhcCceEEEecCCC
Q 021241 182 ------ECHPSWQQ---QKLREFC-KSKGVHLSGYSPLG 210 (315)
Q Consensus 182 ------~~~~~~~~---~~~~~~~-~~~gi~via~~pl~ 210 (315)
.+|+.... ..+.++. ++.|+..+...|++
T Consensus 209 ~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~p~G 247 (430)
T cd01981 209 NELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIG 247 (430)
T ss_pred HhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEeccCCC
Confidence 11222111 1233333 46699998887773
No 148
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=34.39 E-value=81 Score=29.47 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecCC
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~pl 209 (315)
++.+.+|++...+. ..|=|-++...+..+++... .+++|+...-.- .-..+...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~--~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASA--ADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC--CCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 45555555554443 44555556666666655432 355555444321 1245666667777776555433
No 149
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.29 E-value=3.2e+02 Score=23.95 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCeeEEeecc-CCHhHHHHHHHHcCCCCccc-ccccCCCcchHHHHHHHHhcCceE
Q 021241 140 WKAMEALYDSGKARAIGVSN-FSTKKLGDLLEVACVPPAVN-QVECHPSWQQQKLREFCKSKGVHL 203 (315)
Q Consensus 140 ~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~-q~~~~~~~~~~~~~~~~~~~gi~v 203 (315)
|+.+.++++.-.+.-|+... .+.+.+.++++..++.-+++ ..-|.--..-.++.+.|+++|+.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 44555555554555555544 45678888777653322211 111111122257888899888764
No 150
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.02 E-value=3.4e+02 Score=25.94 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=62.4
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC-CCccceEeecCCCCccCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ-IDYLDLYLMHWPVKMKKGSVGFKPE 129 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.+-++|++..+.. +.+-++|.|-+.. ..--+++..-+++.-++.. ...+.++.+|.|.......
T Consensus 62 VfGg~~~L~~~i~~~~~~~--~p~~I~V~ttc~~-eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~------ 132 (417)
T cd01966 62 ILGGGENLEEALDTLAERA--KPKVIGLLSTGLT-ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLE------ 132 (417)
T ss_pred EECCHHHHHHHHHHHHHhc--CCCEEEEECCCcc-cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH------
Confidence 5788888888888764432 4555777777643 2333455555554434421 0146788899887542110
Q ss_pred CCCCCCHHHHHHHHHH-H--------HHcCCeeEEeeccCC---HhHHHHHHHHcCCCC
Q 021241 130 NLDKPDIPSTWKAMEA-L--------YDSGKARAIGVSNFS---TKKLGDLLEVACVPP 176 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~-l--------~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~~ 176 (315)
.-+...+++|-+ + +++++|--||-++.+ .+++.++++..++++
T Consensus 133 ----~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 133 ----DGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred ----HHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 112333333321 1 235668888755443 356677777666544
No 151
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=33.59 E-value=1.3e+02 Score=24.93 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcC
Q 021241 136 IPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVAC 173 (315)
Q Consensus 136 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 173 (315)
..++.+.|+.|++.| ++-.-+||.+...+...++..+
T Consensus 94 ~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 94 HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCC
Confidence 456778999999988 4555578888777777766544
No 152
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=33.42 E-value=1.7e+02 Score=22.56 Aligned_cols=62 Identities=6% Similarity=0.019 Sum_probs=45.4
Q ss_pred CCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCC------ccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021241 73 REDLWITSKLWNAYHEPEDVPEALDRTLRDLQID------YLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEAL 146 (315)
Q Consensus 73 R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 146 (315)
|=-+.|+.|++........+++.+.++.+....+ -.|++++-.+...+ .+..++.+.|+.|
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~-------------~~~~~l~~~l~~l 113 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEE-------------INFSHLNYELSKI 113 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCccc-------------CCHHHHHHHHHHH
Confidence 5568888887655566788999999999887642 57899998765432 5667777777666
Q ss_pred H
Q 021241 147 Y 147 (315)
Q Consensus 147 ~ 147 (315)
.
T Consensus 114 ~ 114 (118)
T PRK01492 114 I 114 (118)
T ss_pred H
Confidence 4
No 153
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=33.22 E-value=2.8e+02 Score=27.50 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred ccCCchhHHHHHHHHHHccCCEEeCC
Q 021241 24 WQSDPGVVGNAVAAAIKAGYRHIDCA 49 (315)
Q Consensus 24 ~~~~~~~~~~~l~~Al~~Gi~~~DTA 49 (315)
+..++++-.++++.+++.|..++|.=
T Consensus 92 ~~~~~~~~~~ll~~~~~~~~d~iDiE 117 (529)
T PLN02520 92 YEGDENKRQDALRLAMELGADYVDVE 117 (529)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 44566777889999999999999984
No 154
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=33.16 E-value=50 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=27.8
Q ss_pred CcccccccCCCcchHHHHHHHH---hcCceEEEecCCCCCCCCCCC
Q 021241 176 PAVNQVECHPSWQQQKLREFCK---SKGVHLSGYSPLGSPGTTWIK 218 (315)
Q Consensus 176 ~~~~q~~~~~~~~~~~~~~~~~---~~gi~via~~pl~~gg~~~~~ 218 (315)
+.+|.+++.+......++.-+. +.|=.++.|+||..+|..+..
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence 3556666666555555555444 346668999999888766543
No 155
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=32.55 E-value=1.2e+02 Score=27.77 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecCC
Q 021241 138 STWKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 138 ~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~pl 209 (315)
+-++.+.+|++.-.+. ..|=|.++...+..+++... .+++|+.....- .-..+...|+.+|+.++..+.+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~--~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~ 283 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGN--VKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGML 283 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCC--CCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE
Confidence 3457788888775554 66777788888888877643 477777665432 2367899999999999987666
No 156
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=32.53 E-value=2e+02 Score=25.35 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhhcCCCCCC--ceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCC
Q 021241 55 EKEIGLVLKKFFEDAVVKRE--DLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLD 132 (315)
Q Consensus 55 E~~lG~al~~~~~~~~~~R~--~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 132 (315)
..++.++++..-. .+. .+.++..+.+.......+...+.+-+++.+++.- -+.+--.....
T Consensus 69 ~~v~~~a~~~~~~----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~------------ 131 (256)
T COG2200 69 RWVLEEACRQLRT----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESAL------------ 131 (256)
T ss_pred HHHHHHHHHHHHh----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchh------------
Confidence 5566666665411 122 4777777765445556777788889999886543 22221111100
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEeeccCCH--hHHHHHHHHcCCCCcccccccCCCc--------ch--HHHHHHHHhcC
Q 021241 133 KPDIPSTWKAMEALYDSGKARAIGVSNFST--KKLGDLLEVACVPPAVNQVECHPSW--------QQ--QKLREFCKSKG 200 (315)
Q Consensus 133 ~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~~~~~~~~~g 200 (315)
......+...+..|++.|- .|.+..|.. ..+..+.+ .+|+++-+.-+... .. ..++..|++.|
T Consensus 132 ~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~ 206 (256)
T COG2200 132 IDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG 206 (256)
T ss_pred hcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC
Confidence 0234467889999999993 556666554 23343333 34555444433322 11 46889999999
Q ss_pred ceEEEec
Q 021241 201 VHLSGYS 207 (315)
Q Consensus 201 i~via~~ 207 (315)
+.+++=+
T Consensus 207 ~~vvaEG 213 (256)
T COG2200 207 LTVVAEG 213 (256)
T ss_pred CEEEEee
Confidence 9999833
No 157
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.52 E-value=4e+02 Score=26.28 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCC
Q 021241 52 YGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENL 131 (315)
Q Consensus 52 Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 131 (315)
+|.++.+-++|++..+.. +.+-++|.|-+ ....--+++..-+++.-+++ -++++.+|.|........+.
T Consensus 67 ~Gg~~kL~~~I~~~~~~~--~P~~I~V~tTC-~~eiIGDDi~~v~~~~~~~~---~~pVi~v~t~~f~g~~~~g~----- 135 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE--RPDLIVLTPTC-TSSILQEDLQNFVDRASIES---DSDVILADVNHYRVNELQAA----- 135 (513)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEECCCC-chhhhhcCHHHHHHHhhccc---CCCEEEeCCCCCcccHHHHH-----
Confidence 466777777777654332 44445555554 33333344544444433333 36899999986532110000
Q ss_pred CCCCHHHHHHHHHH-----------HHHcCCeeEEeecc------CCHhHHHHHHHHcCCCCccccc-------------
Q 021241 132 DKPDIPSTWKAMEA-----------LYDSGKARAIGVSN------FSTKKLGDLLEVACVPPAVNQV------------- 181 (315)
Q Consensus 132 ~~~~~~~~~~~L~~-----------l~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~~~q~------------- 181 (315)
...+..+++.+-. -+..++|--||.++ .+...+.++++..++++.++-.
T Consensus 136 -~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~ 214 (513)
T CHL00076 136 -DRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPK 214 (513)
T ss_pred -HHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhccc
Confidence 0011222222211 01346788898774 3456788888876653321111
Q ss_pred -ccCCCc-ch--HHHHHHHH-hcCceEEEecCCC
Q 021241 182 -ECHPSW-QQ--QKLREFCK-SKGVHLSGYSPLG 210 (315)
Q Consensus 182 -~~~~~~-~~--~~~~~~~~-~~gi~via~~pl~ 210 (315)
.+|+.. +. ..+.++.+ +.|+.++...|+|
T Consensus 215 A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 215 AWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred CcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 112211 11 23444444 5699998888884
No 158
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=32.18 E-value=3.4e+02 Score=27.12 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHcCCCCcccccccCCCcc-h-HHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHHHHH
Q 021241 170 EVACVPPAVNQVECHPSWQ-Q-QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGL 247 (315)
Q Consensus 170 ~~~~~~~~~~q~~~~~~~~-~-~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l 247 (315)
+..++++.+.=+.|..-.. + ..+.++|+++|+.++....++.||- ... ++ ++..+.-+.
T Consensus 369 r~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~----Gai-------~L--------A~aVveA~~ 429 (557)
T PRK13505 369 RKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGE----GGV-------EL--------AEKVVELIE 429 (557)
T ss_pred HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCc----chH-------HH--------HHHHHHHHh
Confidence 3345555544444433222 1 4588999999999998888877751 011 11 111111111
Q ss_pred hcC--Ceee-cCCC----CHHHHHHh-hccCCCCCCHHHHHHHHcccccccccccccccccCCccc
Q 021241 248 QMG--NSLL-PKST----NEVRMKEN-LDVFDWSIPEDLLAKFSGIEQARLLRGTSFVHETYGVFR 305 (315)
Q Consensus 248 ~~~--~~~i-~g~~----~~~~l~en-l~a~~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (315)
..+ ..++ .-.. ..+.+-.+ ..+-+..++++-.++|+.+.+...-.-+.|....+|-|-
T Consensus 430 ~~~s~f~~lY~~d~sl~eKIe~IAkkIYGA~~V~~s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s 495 (557)
T PRK13505 430 EGESNFKPLYDDEDSLEEKIEKIATKIYGAKGVEFSPKAKKQLKQIEKNGWDKLPVCMAKTQYSFS 495 (557)
T ss_pred cCCCCCceecCCCCcHHHHHHHHHHHccCCCCeeECHHHHHHHHHHHHcCCCCCCeEEEccCCCcC
Confidence 101 1122 1111 22222222 245566899988888888877544444555555555443
No 159
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.12 E-value=3.8e+02 Score=24.06 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCc
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIY 52 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Y 52 (315)
+.+...++++...+.|...|.-.-.|
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPf 54 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPF 54 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCC
Confidence 45677788888888888888765444
No 160
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=32.11 E-value=1.7e+02 Score=23.08 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=45.4
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC----CccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI----DYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALY 147 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 147 (315)
.|=-+.|+-|++. ......+++.+.++++.+.. ...|++++-.+...+ .++.++-+.|+.+.
T Consensus 47 ~RvG~~VSKKvG~-AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~-------------~~~~~l~~~L~~~l 112 (129)
T PRK01313 47 PRVGFTVTKKNGN-AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALN-------------APFSQLTEELSRRI 112 (129)
T ss_pred cEEEEEEecccCc-chHHHHHHHHHHHHHHHhchhccCCCceEEEEECccccc-------------CCHHHHHHHHHHHH
Confidence 4555777777653 45677889999999887753 558999998876543 66777777777766
Q ss_pred H
Q 021241 148 D 148 (315)
Q Consensus 148 ~ 148 (315)
+
T Consensus 113 ~ 113 (129)
T PRK01313 113 E 113 (129)
T ss_pred H
Confidence 5
No 161
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=3.6e+02 Score=23.84 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=31.0
Q ss_pred ceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCH
Q 021241 109 DLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFST 162 (315)
Q Consensus 109 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 162 (315)
+-+++|-|-............=....+-+++.+.++..+.. ---++|+.||--
T Consensus 78 ~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmG 130 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMG 130 (250)
T ss_pred CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhh-Cccceeehhhhh
Confidence 44778987654322211111000115567888888888765 446899999865
No 162
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=31.80 E-value=63 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYG 53 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg 53 (315)
.+...+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 3556678888899999999999999884
No 163
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=31.69 E-value=1.9e+02 Score=23.28 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=44.7
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC--CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ--IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS 149 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 149 (315)
.|=-+.|+-|++........+++.+.++.+.+. ....|++++-.+.... .+..++.+.|..|.+.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~-------------~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAK-------------ASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCccc-------------CCHHHHHHHHHHHHHH
Confidence 355577777775555667788888888887653 2344888887654322 6678888888888765
No 164
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=31.68 E-value=3.9e+02 Score=24.15 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCeeEEeeccC-CHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 135 DIPSTWKAMEALYDSGKARAIGVSNF-STKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 135 ~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
+.++....++..++.|.--.+=++.. ....+..+++..+. ..+ .+...+..+++.++..++.|+.+. ..|.
T Consensus 171 ~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~--~~i-~H~~~l~~~~~~~~~l~~~gi~v~-~~P~ 242 (325)
T cd01320 171 PPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA--ERI-GHGIRAIEDPELVKRLAERNIPLE-VCPT 242 (325)
T ss_pred CHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC--ccc-chhhccCccHHHHHHHHHcCCeEE-ECCC
Confidence 45666777888888876443333322 23445555553332 111 111122223568899999999875 4554
No 165
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.67 E-value=2.5e+02 Score=24.00 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCH
Q 021241 90 EDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFST 162 (315)
Q Consensus 90 ~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 162 (315)
..+.+.+++.++.+|.+. .++ .+.. .+.....+.++.+.++| +..|=++..+.
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~---~~~~---------------~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~ 66 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV---FDAQ---------------NDPEEQIEQIEQAISQG-VDGIIVSPVDP 66 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE---EEST---------------TTHHHHHHHHHHHHHTT-ESEEEEESSST
T ss_pred HHHHHHHHHHHHHcCCEE-EEe---CCCC---------------CCHHHHHHHHHHHHHhc-CCEEEecCCCH
Confidence 356777888888888532 222 1111 34566777888887776 67666665554
No 166
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.37 E-value=1.2e+02 Score=25.77 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCC
Q 021241 135 DIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGT 214 (315)
Q Consensus 135 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~ 214 (315)
+.++..+..+.|.+.| ||.+=|+.-++..++.+......-|++.-.-=+++ +.+-.+.|.+.|..++.---+
T Consensus 18 ~~~~a~~~~~al~~gG-i~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~--~~e~a~~a~~aGA~FivSP~~----- 89 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGG-IRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVL--TAEQAEAAIAAGAQFIVSPGF----- 89 (196)
T ss_dssp SGGGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHTTSEEEEES----SHHHHHHHHHHT-SEEEESS------
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEecCCccHHHHHHHHHHHCCCCeeEEEecc--CHHHHHHHHHcCCCEEECCCC-----
Confidence 3456667777777766 77888877666544433222110111110000111 134555666666666552211
Q ss_pred CCCCCccCCChHHHHHHHHhCCCHHHHHHHHHHhcCCeeecCCCCHHHHHHhhc
Q 021241 215 TWIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMGNSLLPKSTNEVRMKENLD 268 (315)
Q Consensus 215 ~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~ 268 (315)
++. .++++.+++...+||+.|+.++...++
T Consensus 90 ---------~~~---------------v~~~~~~~~i~~iPG~~TptEi~~A~~ 119 (196)
T PF01081_consen 90 ---------DPE---------------VIEYAREYGIPYIPGVMTPTEIMQALE 119 (196)
T ss_dssp ----------HH---------------HHHHHHHHTSEEEEEESSHHHHHHHHH
T ss_pred ---------CHH---------------HHHHHHHcCCcccCCcCCHHHHHHHHH
Confidence 122 355555556666666666666665554
No 167
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=31.17 E-value=5e+02 Score=25.20 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=65.4
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCc-eEEEeccCCCCCCCCcHHHHHHHHHHHcC---C--CccceEeecCCCCccCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKRED-LWITSKLWNAYHEPEDVPEALDRTLRDLQ---I--DYLDLYLMHWPVKMKKGSV 124 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~-v~i~tK~~~~~~~~~~i~~~~e~SL~rLg---~--d~iDl~~lH~p~~~~~~~~ 124 (315)
.||.++.|-++|++..+.. ++.+ ++|.|-+. ...--+++..-+++.-++++ . ..+.++.+|.|.......
T Consensus 73 VfGg~~~L~~ai~~~~~~~--~~p~~i~v~ttc~-~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~- 148 (461)
T TIGR02931 73 VFGALDRVEEAVDVLLTRY--PDVKVVPIITTCS-TEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMI- 148 (461)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCCEEEEECCch-HHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHH-
Confidence 5788888889988865443 3334 55666653 23344667777776666653 1 136789999887642110
Q ss_pred CCCCCCCCCCCHHHHHHHHH-HHHH----cCCeeEEeecc--CCHhHHHHHHHHcCCCCc
Q 021241 125 GFKPENLDKPDIPSTWKAME-ALYD----SGKARAIGVSN--FSTKKLGDLLEVACVPPA 177 (315)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~L~-~l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~ 177 (315)
.-...++++|- .+.. +++|--||-.+ -+.+.+.++++..++++.
T Consensus 149 ---------~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 149 ---------TGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred ---------HHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 11222232222 2221 46788888543 345778888888776443
No 168
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=31.12 E-value=1.4e+02 Score=24.40 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHHHHHHHccCCEEeCCCCcCC-HHHHHHHHHhhhhcCCCCCCceEEEecc-CCCCCCCCcHHHHHHHHHHHcCCC
Q 021241 31 VGNAVAAAIKAGYRHIDCAQIYGN-EKEIGLVLKKFFEDAVVKREDLWITSKL-WNAYHEPEDVPEALDRTLRDLQID 106 (315)
Q Consensus 31 ~~~~l~~Al~~Gi~~~DTA~~Yg~-E~~lG~al~~~~~~~~~~R~~v~i~tK~-~~~~~~~~~i~~~~e~SL~rLg~d 106 (315)
..-.+++|-+.||.+|=.|..||- -..+-+.+.+ -=++++.|.- +-...+...+...+++-|+..|.+
T Consensus 16 le~a~erA~elgik~~vVAS~tG~tA~k~lemveg--------~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 16 LEIAVERAKELGIKHIVVASSTGYTALKALEMVEG--------DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc--------CceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 445667788899999999999983 2222222221 1235555543 333344556888899999999954
No 169
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=31.05 E-value=2.5e+02 Score=23.95 Aligned_cols=67 Identities=6% Similarity=0.055 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHH--cCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 137 PSTWKAMEALYD--SGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 137 ~~~~~~L~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
..+...++.+++ .+. -+.|-+++++.++++++. +.++..+...+.. ..++++.++++|..++++---
T Consensus 57 ~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 334455555554 333 677789999999999998 5554433333322 568999999999999997666
No 170
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=30.98 E-value=1e+02 Score=26.11 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=46.2
Q ss_pred cccccCCchhHHHHHHHHHHccCCEEeCCCCcC-CHHHHH--HHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHH
Q 021241 21 LGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYG-NEKEIG--LVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALD 97 (315)
Q Consensus 21 lGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~E~~lG--~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e 97 (315)
+.+...++++...+.+.|.++|..++=|+..|. .-..++ +.+++.+ +.+ +-.|....-.+.+...+-++
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~------~~~--v~ik~aGGikt~~~~l~~~~ 194 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV------GGR--VGVKAAGGIRTLEDALAMIE 194 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh------CCC--ceEEEeCCCCCHHHHHHHHH
Confidence 444445567888899999999999999998886 111111 2344431 111 34454333335666666666
Q ss_pred HHHHHcCC
Q 021241 98 RTLRDLQI 105 (315)
Q Consensus 98 ~SL~rLg~ 105 (315)
.-..|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 66667765
No 171
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=30.95 E-value=3e+02 Score=22.61 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=54.0
Q ss_pred HHHHHHcC-CeeEEeeccCCHhHHH------HHHHHc-CCCCcccccccCCCcc-------h--------HHHHHHHHhc
Q 021241 143 MEALYDSG-KARAIGVSNFSTKKLG------DLLEVA-CVPPAVNQVECHPSWQ-------Q--------QKLREFCKSK 199 (315)
Q Consensus 143 L~~l~~~G-~ir~iGvs~~~~~~l~------~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~~~~~~~~~ 199 (315)
|.+....+ .|...|+++.+...+. .++... ..+.+++++-.|=... . ..+++.++++
T Consensus 27 l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~ 106 (198)
T cd01821 27 LPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAK 106 (198)
T ss_pred HHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 44433334 6888999988776442 333322 2233444554443222 1 3688889999
Q ss_pred CceEEEecCCCCCCCCCCC--CccC--CChHHHHHHHHhCCCH
Q 021241 200 GVHLSGYSPLGSPGTTWIK--SDVL--KHPVVNMVAEKLGKTP 238 (315)
Q Consensus 200 gi~via~~pl~~gg~~~~~--~~~~--~~~~l~~la~~~~~s~ 238 (315)
|..++-.+|.......... .... -.+.++++|+++|+..
T Consensus 107 ~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 107 GATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred CCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 9999998887422111111 0011 1367889999998753
No 172
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=30.91 E-value=98 Score=29.90 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=67.5
Q ss_pred HHHHHHHhhhhcCCCCCCceEEEeccCCCC-CCC--------CcHHHHH--HHHHHHcCCCccceEeecCCCCccCCCCC
Q 021241 57 EIGLVLKKFFEDAVVKREDLWITSKLWNAY-HEP--------EDVPEAL--DRTLRDLQIDYLDLYLMHWPVKMKKGSVG 125 (315)
Q Consensus 57 ~lG~al~~~~~~~~~~R~~v~i~tK~~~~~-~~~--------~~i~~~~--e~SL~rLg~d~iDl~~lH~p~~~~~~~~~ 125 (315)
.+-.+-++.+.. --+.+++++.-++... ..| -.|.-.+ .+.-+||.+.|+|.. .
T Consensus 152 T~~~~~r~h~~g--dL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~-------a------ 216 (561)
T COG2987 152 TFAEAGRQHFGG--DLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI-------A------ 216 (561)
T ss_pred HHHHHHHHhcCC--CccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-------c------
Confidence 333444444422 3688899988875421 000 0111111 223378889999863 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCccc--cccc
Q 021241 126 FKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVN--QVEC 183 (315)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~--q~~~ 183 (315)
.+++|.++..++..++|+-.+||+-..-++.+.++++.. ++|+++ |...
T Consensus 217 --------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~-~~pD~vtDQTsa 267 (561)
T COG2987 217 --------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRG-IRPDLVTDQTSA 267 (561)
T ss_pred --------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcC-CCCceecccccc
Confidence 568999999999999999999999999999999988764 455544 6554
No 173
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=30.88 E-value=3e+02 Score=24.33 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcC--CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCC------CCCCcHHHHHHHH
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYG--NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAY------HEPEDVPEALDRT 99 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~------~~~~~i~~~~e~S 99 (315)
+....+.++.+-+.|++.+..++.+- +++..-++++.. ....+.+.|-++..+ .+++...+.+++-
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 34567788888999999999998876 566666778875 455588888887643 3477888888888
Q ss_pred HHHcCCCccceEeecC
Q 021241 100 LRDLQIDYLDLYLMHW 115 (315)
Q Consensus 100 L~rLg~d~iDl~~lH~ 115 (315)
|+. | .|.+++..
T Consensus 157 LeA-G---A~~ViiEa 168 (244)
T PF02679_consen 157 LEA-G---ADKVIIEA 168 (244)
T ss_dssp HHH-T---ECEEEE--
T ss_pred HHC-C---CCEEEEee
Confidence 877 5 56667754
No 174
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=30.80 E-value=90 Score=27.93 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCeeEEeeccCCH-----hHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEec
Q 021241 135 DIPSTWKAMEALYDSGKARAIGVSNFST-----KKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 135 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~-----~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~ 207 (315)
+..+.-..|++|++.| +-||.||+. -++.+.++..+.. +.++-+++..|++.|+-.++|.
T Consensus 93 P~~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~yv 157 (268)
T PF09370_consen 93 PFRDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAYV 157 (268)
T ss_dssp TT--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--EE
T ss_pred CCCcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeeee
Confidence 3456778888999887 579999985 3455555555431 1233456666777666666543
No 175
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.59 E-value=51 Score=26.10 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCceEEEecCCC
Q 021241 190 QKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 190 ~~~~~~~~~~gi~via~~pl~ 210 (315)
.++++.|+++||.+++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 689999999999999998884
No 176
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.95 E-value=3.6e+02 Score=25.03 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHcCC---eeEEeec--cCCHhHHHHHHHHcC-CCCcccccccCCCcch---------HHHHHHH--
Q 021241 134 PDIPSTWKAMEALYDSGK---ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVECHPSWQQ---------QKLREFC-- 196 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~---------~~~~~~~-- 196 (315)
.+++++++++..+.+.|+ ++++=+. |.+.+++.++.+... .+..++-++||+.... ....+..
T Consensus 228 ~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~~ 307 (336)
T PRK14470 228 FPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALAR 307 (336)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHHH
Confidence 467899999999987654 3444443 455667777766653 4567888888885432 2345556
Q ss_pred HhcCceEEEecCCCC
Q 021241 197 KSKGVHLSGYSPLGS 211 (315)
Q Consensus 197 ~~~gi~via~~pl~~ 211 (315)
+++|+.+......|.
T Consensus 308 ~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 308 ELPGTPVVRRYSGGQ 322 (336)
T ss_pred ccCCeEEEEECCCCC
Confidence 367999888887754
No 177
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.93 E-value=3.9e+02 Score=25.93 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-Cee---------EEeeccCCHh
Q 021241 94 EALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KAR---------AIGVSNFSTK 163 (315)
Q Consensus 94 ~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir---------~iGvs~~~~~ 163 (315)
..+-+.|.++|++.|++. .....+....| .-++-|+.++.+++.. .++ -+|.+++..+
T Consensus 29 l~ia~~Ld~~Gv~~IE~~----ggatf~~~~~f--------~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pdd 96 (448)
T PRK12331 29 LPILEKLDNAGYHSLEMW----GGATFDACLRF--------LNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADD 96 (448)
T ss_pred HHHHHHHHHcCCCEEEec----CCccchhhhcc--------CCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchh
Confidence 345556888898888882 11110000000 1122466666666542 233 2566666555
Q ss_pred HHHHHHHHc-CCCCcccccccCCCcch--HHHHHHHHhcCceEEE
Q 021241 164 KLGDLLEVA-CVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSG 205 (315)
Q Consensus 164 ~l~~~~~~~-~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via 205 (315)
.+.+.++.+ ...++++.+..++-+.+ .+.+++++++|..+.+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 444433332 12234444443332222 4678888888876543
No 178
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=29.88 E-value=2.9e+02 Score=26.47 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHc------CCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecC
Q 021241 138 STWKAMEALYDS------GKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 138 ~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~p 208 (315)
+-++.|.+|++. ..=-..+=|-++.+.+.++++... .+++|+..+-.- ...++..+|+.+||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a--~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKA--GHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCC--CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 456777777765 333355666678888888877643 377777765432 236789999999999999877
Q ss_pred C
Q 021241 209 L 209 (315)
Q Consensus 209 l 209 (315)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 6
No 179
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=29.87 E-value=94 Score=24.54 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEee
Q 021241 93 PEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGV 157 (315)
Q Consensus 93 ~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 157 (315)
+..+++.|+.+....+|.++++..++.. ....+....++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~-------------R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLG-------------RNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhc-------------cCHHHHHHHHHHHHhhcCcEEEEe
Confidence 5677777777877889999999887764 446777888888887723343333
No 180
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=29.85 E-value=2.3e+02 Score=26.81 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecCC
Q 021241 139 TWKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 139 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~pl 209 (315)
-++.|.+|++...+. ..|=|-++..++..+++... .+++|......- .-..+...|+++|+.+..++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 356777787776554 55666677778887777543 477776654432 2367888999999999887764
No 181
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.71 E-value=4.3e+02 Score=25.05 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch---HHHHHHHHhcCceEEEecCCC
Q 021241 137 PSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ---QKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 137 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~via~~pl~ 210 (315)
..++..++.+.+.+.++.+-+...+.+.+++.+.. ..+..++..+-||.-.- .++.+.|+++|+.++.=...+
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 44555566655555566666655566777666532 23334444444554322 678999999999988755443
No 182
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=29.61 E-value=3.4e+02 Score=22.79 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=69.2
Q ss_pred CceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee
Q 021241 74 EDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKAR 153 (315)
Q Consensus 74 ~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 153 (315)
....++-.+.......+.....+...+++.+..--.+++--...... .....+.+.++.+++.|-
T Consensus 82 ~~~~l~ini~~~~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~-------------~~~~~~~~~~~~l~~~G~-- 146 (240)
T cd01948 82 PDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALI-------------DDLEEALATLRRLRALGV-- 146 (240)
T ss_pred CCeEEEEECCHHHhCCcHHHHHHHHHHHHcCCCHHHEEEEEecchhh-------------CCHHHHHHHHHHHHHCCC--
Confidence 44455555544444455677888889999887643333222111110 334568899999999998
Q ss_pred EEeeccCCHh--HHHHHHHHcCCCCcccccccCCCcc-----h-----HHHHHHHHhcCceEEEec
Q 021241 154 AIGVSNFSTK--KLGDLLEVACVPPAVNQVECHPSWQ-----Q-----QKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 154 ~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~~~~~-----~-----~~~~~~~~~~gi~via~~ 207 (315)
.+++.++... .+..+.. .+|+++-+..+.... . ..++..|+..|+.+++-+
T Consensus 147 ~l~ld~~g~~~~~~~~l~~---~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 147 RIALDDFGTGYSSLSYLKR---LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred eEEEeCCCCcHhhHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 6777776543 3333322 345655554433221 1 457889999999999844
No 183
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=29.56 E-value=21 Score=18.47 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=10.9
Q ss_pred CCcccccccccCCC
Q 021241 301 YGVFRTLEDLWDGE 314 (315)
Q Consensus 301 ~~~~~~~~~~~~~~ 314 (315)
.-||..+|.||.|.
T Consensus 6 ~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 6 NMPYSKLEKLWEGV 19 (20)
T ss_pred ECCCCChHHhcCcc
Confidence 34788899999874
No 184
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=29.46 E-value=5e+02 Score=24.68 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=69.2
Q ss_pred HHHHHcCCeeEEeeccCCHhHHH-HHHHHcCCC-CcccccccCCCcchHHHHHHHHhcCceE---EEecCCCCCCCCCCC
Q 021241 144 EALYDSGKARAIGVSNFSTKKLG-DLLEVACVP-PAVNQVECHPSWQQQKLREFCKSKGVHL---SGYSPLGSPGTTWIK 218 (315)
Q Consensus 144 ~~l~~~G~ir~iGvs~~~~~~l~-~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~gi~v---ia~~pl~~gg~~~~~ 218 (315)
.++.++-.||.+|+-..+-..+. ++.+..+-+ -+.+.+-+++.+-.. =.|-++|.-| ++++||. |+..+-
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGAS---icAiknGkSvDTSMGfTPLe--Gl~MGT 238 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGAS---ICAIKNGKSVDTSMGFTPLE--GLMMGT 238 (396)
T ss_pred HHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCchh---hhhhhCCeeeccCCCCCccc--ceeccC
Confidence 45677789999999887765443 333433322 156666666654321 1133555554 5688995 333222
Q ss_pred -CccCCChHHHHHHHHhCCCHHHHHHHHHHhcCCeeecCCCC-HHHHHHhhc
Q 021241 219 -SDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMGNSLLPKSTN-EVRMKENLD 268 (315)
Q Consensus 219 -~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~~~i~g~~~-~~~l~enl~ 268 (315)
+--.+...+.-++++.|+|+.|+.---.-..|.-=+.|.++ ...+.++.+
T Consensus 239 RsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~ 290 (396)
T COG0282 239 RSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAA 290 (396)
T ss_pred CCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhc
Confidence 22234456788899999999996544333444334556443 555655554
No 185
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=29.31 E-value=7e+02 Score=27.77 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=61.3
Q ss_pred HHHHHHHHH--HcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-Ce--eEEeeccCCHhHHHH
Q 021241 93 PEALDRTLR--DLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KA--RAIGVSNFSTKKLGD 167 (315)
Q Consensus 93 ~~~~e~SL~--rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~i--r~iGvs~~~~~~l~~ 167 (315)
...++...+ .-|-+.||+= +.... .+-.+.+..+-.+++.- .+ --|-|-+++++.+++
T Consensus 384 ~~al~~A~~qve~GA~iIDVn----~g~~~-------------id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEa 446 (1229)
T PRK09490 384 DEALDVARQQVENGAQIIDIN----MDEGM-------------LDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEA 446 (1229)
T ss_pred HHHHHHHHHHHHCCCCEEEEC----CCCCC-------------CCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHH
Confidence 333444333 4578999993 22111 33455554444444421 11 236777899999999
Q ss_pred HHHHcCCCCcccccccCCCcc-hHHHHHHHHhcCceEEEecCC
Q 021241 168 LLEVACVPPAVNQVECHPSWQ-QQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~gi~via~~pl 209 (315)
.++...-++.+|-+..--.+. -.++++.|++.|..++++.--
T Consensus 447 aLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~d 489 (1229)
T PRK09490 447 GLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFD 489 (1229)
T ss_pred HHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecC
Confidence 999865566666655433322 247899999999999998643
No 186
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=29.06 E-value=3.2e+02 Score=25.92 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEeecc-----CC-----HhHHHHHHHHcCCCCcccccccC---CCcchHHHHHHHHh
Q 021241 132 DKPDIPSTWKAMEALYDSGKARAIGVSN-----FS-----TKKLGDLLEVACVPPAVNQVECH---PSWQQQKLREFCKS 198 (315)
Q Consensus 132 ~~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~-----~~~l~~~~~~~~~~~~~~q~~~~---~~~~~~~~~~~~~~ 198 (315)
...+.+++.+.++.+++.| ++.|-+.. +. ...+.++++.....+....+.++ +..-..++++..++
T Consensus 165 r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~ 243 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIAS 243 (414)
T ss_pred ccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHh
Confidence 4477899999999999987 45554431 22 12344554432111111122322 22234678888887
Q ss_pred cC
Q 021241 199 KG 200 (315)
Q Consensus 199 ~g 200 (315)
.+
T Consensus 244 ~~ 245 (414)
T TIGR01579 244 EK 245 (414)
T ss_pred cC
Confidence 54
No 187
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=29.00 E-value=3.3e+02 Score=22.41 Aligned_cols=113 Identities=14% Similarity=-0.032 Sum_probs=56.6
Q ss_pred ccccccccCCchhHHHHHHHHHHcc-CCEEeCCCCcCC--H----------HHHHHHHHhhhhcCC--CCCCceEEEecc
Q 021241 18 SVGLGTWQSDPGVVGNAVAAAIKAG-YRHIDCAQIYGN--E----------KEIGLVLKKFFEDAV--VKREDLWITSKL 82 (315)
Q Consensus 18 ~lglGt~~~~~~~~~~~l~~Al~~G-i~~~DTA~~Yg~--E----------~~lG~al~~~~~~~~--~~R~~v~i~tK~ 82 (315)
-+..|+-..+ ++..+.+....+.+ |..+-||+.+++ + ..++..+++.-=.|. -.--+++|.+-+
T Consensus 39 LlivGp~~~d-ee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yDlviflG~ 117 (170)
T COG1880 39 LLIVGPLALD-EELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYDLVIFLGS 117 (170)
T ss_pred eEEecccccC-HHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcceEEEEec
Confidence 3444554454 44444444455555 999999999972 2 223333333100000 012344444432
Q ss_pred CCCCCCCCcHHHHHHHHHHHcC---CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021241 83 WNAYHEPEDVPEALDRTLRDLQ---IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD 148 (315)
Q Consensus 83 ~~~~~~~~~i~~~~e~SL~rLg---~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 148 (315)
..+...++-.+|+... +=.||=++.-+.+.+.+. ..-++-+..|++|.+
T Consensus 118 ------~~yy~sq~Ls~lKhFs~i~tiaId~~Y~pnAd~SFpN-----------l~kde~~~~L~ell~ 169 (170)
T COG1880 118 ------IYYYLSQVLSGLKHFSNIKTIAIDRYYQPNADYSFPN-----------LSKDEYLAYLDELLD 169 (170)
T ss_pred ------cHHHHHHHHHHhhhhhcceEEEeccccCcCccccCCC-----------cCHHHHHHHHHHHhc
Confidence 2245556666666654 223344444333332222 556778888988875
No 188
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.72 E-value=2.3e+02 Score=23.71 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHH
Q 021241 136 IPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEV 171 (315)
Q Consensus 136 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (315)
+..++..|--.++.||+-++|+-|-.--.+...++.
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKd 42 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKD 42 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHcc
Confidence 456777788778999999999999887777766654
No 189
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.36 E-value=5.3e+02 Score=24.68 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=61.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN 130 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.++.|-++|++..+.. +.+-++|.|-+. ...--+++..-+++.-++.....+.++.++.|.......
T Consensus 65 VfGg~~kL~~aI~~~~~~~--~P~~I~V~ttc~-~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~------- 134 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQY--NPEVIGIATTCL-SETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHV------- 134 (429)
T ss_pred EECcHHHHHHHHHHHHHhc--CCCEEEEeCCch-HHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHH-------
Confidence 5788889999998865443 344456666542 223334455444443333111246788888876532100
Q ss_pred CCCCCHHHHHHHHHH-HH----HcCCeeEEeecc--CCHhHHHHHHHHcCCCC
Q 021241 131 LDKPDIPSTWKAMEA-LY----DSGKARAIGVSN--FSTKKLGDLLEVACVPP 176 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~-l~----~~G~ir~iGvs~--~~~~~l~~~~~~~~~~~ 176 (315)
.-...++++|-+ +. +.++|--||-.+ -+.+.+.++++..++++
T Consensus 135 ---~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 135 ---EGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred ---HHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 112333333322 22 246788887433 34577888888877654
No 190
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.18 E-value=4.4e+02 Score=23.64 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=31.4
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHc-cCCEEeCCCC-cCCHHHHHHHHHhh
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKA-GYRHIDCAQI-YGNEKEIGLVLKKF 65 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~-Gi~~~DTA~~-Yg~E~~lG~al~~~ 65 (315)
+|+.|.+-+.+.| +.++-.++++..++. ||+.|+.... .+.++. +++++.
T Consensus 4 TlRDG~Q~~~~~~-----s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~--~av~~~ 55 (280)
T cd07945 4 TLRDGEQTSGVSF-----SPSEKLNIAKILLQELKVDRIEVASARVSEGEF--EAVQKI 55 (280)
T ss_pred CCCCcCcCCCCcc-----CHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHH--HHHHHH
Confidence 4566766665554 346777777775555 9999999754 443332 555544
No 191
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.88 E-value=1.9e+02 Score=24.73 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCeeEEeecc-CCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 139 TWKAMEALYDSGKARAIGVSN-FSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 139 ~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
..+.+++++++..=-.||..+ .+.++++++++.. -+ +-.+| .-+.+++++|+++|+.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~-----FivSP-~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SR-----FIVSP-GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CC-----EEECC-CCCHHHHHHHHHcCCCEeC
Confidence 455666666553324588776 6677888877753 22 22333 2346899999999998775
No 192
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=27.40 E-value=4.5e+02 Score=23.48 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=77.2
Q ss_pred CchhHHHHHHHHHHccCCEEeC----------CCCcC-CHHHHHHHHHhhhhcCCCCCC-ceEEEeccCCCCCCCCcHHH
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDC----------AQIYG-NEKEIGLVLKKFFEDAVVKRE-DLWITSKLWNAYHEPEDVPE 94 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DT----------A~~Yg-~E~~lG~al~~~~~~~~~~R~-~v~i~tK~~~~~~~~~~i~~ 94 (315)
+.++..+..+.+.+.|+..||. ...|+ +.+.+-+.++.. ++. ++-|..|+.+.. +.+ .
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v------r~~~~~Pv~vKl~~~~---~~~-~ 169 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV------KKATDVPVIVKLTPNV---TDI-V 169 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH------HhccCCCEEEEeCCCc---hhH-H
Confidence 4567778888888889999886 12343 556666666553 122 577888975321 222 2
Q ss_pred HHHHHHHHcCCCccceEe------ecCCCCc--cC-CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccC-CHhH
Q 021241 95 ALDRTLRDLQIDYLDLYL------MHWPVKM--KK-GSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNF-STKK 164 (315)
Q Consensus 95 ~~e~SL~rLg~d~iDl~~------lH~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~ 164 (315)
.+-+.++..|.|.|++.- +|.-... .. ....++.. ....-.++.+.++++.=.+.-||+... +++.
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~----~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGP----AIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCc----ccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 334557788987776631 1110000 00 00000000 111235667777776556888888885 6788
Q ss_pred HHHHHHHcCCCCcccccc
Q 021241 165 LGDLLEVACVPPAVNQVE 182 (315)
Q Consensus 165 l~~~~~~~~~~~~~~q~~ 182 (315)
+.+++.. +. +.+|+-
T Consensus 246 a~~~l~~-GA--d~V~ig 260 (296)
T cd04740 246 ALEFLMA-GA--SAVQVG 260 (296)
T ss_pred HHHHHHc-CC--CEEEEc
Confidence 8888863 33 666644
No 193
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=27.25 E-value=1.1e+02 Score=26.70 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~ 211 (315)
...++..++|..|+-+|.+-.==.|.+....++.+++..+.+ .|.|++.. .+++...-+.|..++--++-+.
T Consensus 73 ~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 73 REVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred hhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 346777788888873333222223445556677777766543 36777765 5677777777777666666655
Q ss_pred CCCCC--CCCccC--CChHHHHHHHHhCCCHH
Q 021241 212 PGTTW--IKSDVL--KHPVVNMVAEKLGKTPA 239 (315)
Q Consensus 212 gg~~~--~~~~~~--~~~~l~~la~~~~~s~a 239 (315)
| +.. -...+. ..+.+..++++||+.|+
T Consensus 147 g-L~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 147 G-LDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred C-CChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 3 211 001111 12567888888887653
No 194
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.11 E-value=5.1e+02 Score=23.98 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=59.2
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---eeEEeec--cCCHhHHHHHHHHcC-CCCccccccc
Q 021241 111 YLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GK---ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVEC 183 (315)
Q Consensus 111 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~ 183 (315)
+-||.++............ ..+++++++.++++.+. |. ++++=+. |.+.+++.++.+..+ ....++-++|
T Consensus 212 iSL~a~~~e~r~~i~p~~~---~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpy 288 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNK---KYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPV 288 (343)
T ss_pred EEeCCCCHHHHHhhcCcCC---CCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEec
Confidence 4678776542221110001 15788999999987765 42 4565555 555667777766643 3445666788
Q ss_pred CCCcch---------HHHHHHHHhcCceEEEecCCC
Q 021241 184 HPSWQQ---------QKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 184 ~~~~~~---------~~~~~~~~~~gi~via~~pl~ 210 (315)
|+.... ..+.+..+++|+.+......+
T Consensus 289 np~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g 324 (343)
T PRK14469 289 NPTVPGLEKPSRERIERFKEILLKNGIEAEIRREKG 324 (343)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 875421 245667778899998877663
No 195
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.10 E-value=4.9e+02 Score=25.16 Aligned_cols=124 Identities=11% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEeecc--CCH-----hHHHHHHHHc-CCCCcccccccC---CCcchHHHHHHHHhcC
Q 021241 132 DKPDIPSTWKAMEALYDSGKARAIGVSN--FST-----KKLGDLLEVA-CVPPAVNQVECH---PSWQQQKLREFCKSKG 200 (315)
Q Consensus 132 ~~~~~~~~~~~L~~l~~~G~ir~iGvs~--~~~-----~~l~~~~~~~-~~~~~~~q~~~~---~~~~~~~~~~~~~~~g 200 (315)
...+++++.+.++.|++.| ++.|-+.. ++. ..+.++++.. .. .....+.++ +..-..++++..++.+
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~-~~~~~ir~~~~~p~~~~~ell~~m~~~~ 258 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDE-TTIERIRFTSPHPKDFPDHLLSLMAKNP 258 (449)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcC-CCcceEEEECCCcccCCHHHHHHHHhCC
Confidence 3467899999999999987 67775542 211 2244444322 11 112233333 3333468899888876
Q ss_pred c--eEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHHHHHHHHHhc-C-----CeeecCC--CCHHHHHHhhc
Q 021241 201 V--HLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQM-G-----NSLLPKS--TNEVRMKENLD 268 (315)
Q Consensus 201 i--~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~-~-----~~~i~g~--~~~~~l~enl~ 268 (315)
- ..+- -|+-.| +++.|+.+.+.+...-..-+++++... | +.+|+|. -+.+++++.++
T Consensus 259 ~~~~~l~-lgvQSg----------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~ 325 (449)
T PRK14332 259 RFCPNIH-LPLQAG----------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLA 325 (449)
T ss_pred CccceEE-ECCCcC----------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHH
Confidence 3 2222 233122 234455554333222222355555543 1 2467774 56666666554
No 196
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.10 E-value=3.8e+02 Score=23.91 Aligned_cols=114 Identities=8% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCccceEe----------ecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec----
Q 021241 93 PEALDRTLRDLQIDYLDLYL----------MHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS---- 158 (315)
Q Consensus 93 ~~~~e~SL~rLg~d~iDl~~----------lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs---- 158 (315)
+..+-..|.++|+++|++-. +. ....+.++.+.++..+-++..+.-+
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~-------------------~~~~e~i~~~~~~~~~~~l~~~~r~~~~~ 83 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVWGGATFDVCMRFLN-------------------EDPWERLRELRKAMPNTPLQMLLRGQNLV 83 (275)
T ss_pred HHHHHHHHHHcCCCEEEccCCcchhhhccccC-------------------CCHHHHHHHHHHhCCCCceehhccccccc
Q ss_pred -------cCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHH
Q 021241 159 -------NFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVA 231 (315)
Q Consensus 159 -------~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la 231 (315)
+.....++...+ ++++..-+-.+.|.+..-.+.+++++++|+.+...-.+..+ .....+.+.+++
T Consensus 84 ~~~~~p~~~~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-------~~~~~~~~~~~~ 155 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-------PVHTLEYYVKLA 155 (275)
T ss_pred CccCCCcHHHHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-------CCCCHHHHHHHH
Q ss_pred HH
Q 021241 232 EK 233 (315)
Q Consensus 232 ~~ 233 (315)
++
T Consensus 156 ~~ 157 (275)
T cd07937 156 KE 157 (275)
T ss_pred HH
No 197
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=26.93 E-value=2.8e+02 Score=24.06 Aligned_cols=84 Identities=11% Similarity=0.185 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhC---------CCHHHHHHHHHHhcC-CeeecCCCC
Q 021241 190 QKLREFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLG---------KTPAQVCLRWGLQMG-NSLLPKSTN 259 (315)
Q Consensus 190 ~~~~~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~---------~s~aq~al~~~l~~~-~~~i~g~~~ 259 (315)
.++.+..++.|+..++++-+.. -.....+..+|++.| .++.++ +.+ +..| .++|+.++.
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~-i~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES---------NYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYE-VAEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHH-HHcCCeEEEEEEcc
Confidence 3455666666777776665532 122345666676655 355555 454 4777 455655543
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHcccc
Q 021241 260 EVRMKENLDVFDWSIPEDLLAKFSGIEQ 287 (315)
Q Consensus 260 ~~~l~enl~a~~~~L~~~~~~~l~~~~~ 287 (315)
. .|.+. -+...|+++.+++|.++.+
T Consensus 144 ~-gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 144 M-GLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred C-CCChH--HcCCccCHHHHHHHHHHHh
Confidence 3 33322 3566899999988887655
No 198
>PRK05588 histidinol-phosphatase; Provisional
Probab=26.83 E-value=4.3e+02 Score=23.06 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHccCCEEeCCCCcC-----C---HHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHH
Q 021241 29 GVVGNAVAAAIKAGYRHIDCAQIYG-----N---EKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTL 100 (315)
Q Consensus 29 ~~~~~~l~~Al~~Gi~~~DTA~~Yg-----~---E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL 100 (315)
....+.+++|.+.|+..+ .+++.. . ..-+-..++.. .. .+.-+|++.--+. ..++ ....+++.|
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i-~~--~~~~~I~~GiE~~---~~~~-~~~~~~~~l 87 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKY-SK--YRNNKLLLGIELG---MEKD-LIEENKELI 87 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHH-HH--HhcCCcceEEEec---ccCC-CHHHHHHHH
Confidence 457789999999999998 666531 0 00111222221 00 1123444444442 2233 466778888
Q ss_pred HHcCCCccceEeecCCC
Q 021241 101 RDLQIDYLDLYLMHWPV 117 (315)
Q Consensus 101 ~rLg~d~iDl~~lH~p~ 117 (315)
++.+.||+ +.-+|+..
T Consensus 88 ~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 88 NKYEFDYV-IGSIHLVD 103 (255)
T ss_pred hhCCCCeE-EEeEEeeC
Confidence 88888887 78889754
No 199
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=26.77 E-value=3.8e+02 Score=24.68 Aligned_cols=123 Identities=11% Similarity=0.172 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeecc-----CCHhHHHHHHHHcCC-CCccc---cc-------ccCCCcchHHHHHHHH
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSN-----FSTKKLGDLLEVACV-PPAVN---QV-------ECHPSWQQQKLREFCK 197 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~-~~~~~---q~-------~~~~~~~~~~~~~~~~ 197 (315)
.+.+++.+.++.+++.| ++.|.+.+ ...+.+.++++..+. .+.+. .. .-+......+.++..+
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67899999999999987 66676662 233443444433221 11111 00 0022223467888888
Q ss_pred hcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHH--HHHHHHHhcC----CeeecCC-CCHHHHHHhhc
Q 021241 198 SKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQ--VCLRWGLQMG----NSLLPKS-TNEVRMKENLD 268 (315)
Q Consensus 198 ~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq--~al~~~l~~~----~~~i~g~-~~~~~l~enl~ 268 (315)
+.|+.-+. .. + .+.+..+..+.++.. +.+..+ -+++++...| ...++|. -+.++..+.+.
T Consensus 149 eAGl~~i~----~~-~-----~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~ 215 (343)
T TIGR03551 149 EAGLDSMP----GT-A-----AEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLL 215 (343)
T ss_pred HhCccccc----Cc-c-----hhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHH
Confidence 88887553 11 1 133333333344321 123322 2666666666 3556664 55566655553
No 200
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=26.76 E-value=5.8e+02 Score=24.58 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCcHHHHHHHHHHHcCCCccceEeecCCCCccCCC--CCCCCCCCCCC----CHHHHHHHHHHHHH-----cCCeeEEee
Q 021241 89 PEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGS--VGFKPENLDKP----DIPSTWKAMEALYD-----SGKARAIGV 157 (315)
Q Consensus 89 ~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~--~~~~~~~~~~~----~~~~~~~~L~~l~~-----~G~ir~iGv 157 (315)
+..+....++.++.-..+.--.+|+|-|.+...-. ..+... .... ..+.+.+.++...+ .+.|+.|=+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~-~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~ 120 (449)
T PRK09058 42 AEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNA-WNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYF 120 (449)
T ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcC-CchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEE
Confidence 35556666666643222233468999998643221 111110 0001 12233344443332 245665533
Q ss_pred c-----cCCHhHHHHHHHHcCC--C--Cc-ccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 158 S-----NFSTKKLGDLLEVACV--P--PA-VNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 158 s-----~~~~~~l~~~~~~~~~--~--~~-~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
. ..+++++.++++.... + .+ -+-++.|+-.-..+.++.+++.|+.-+..+.-
T Consensus 121 GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQ 182 (449)
T PRK09058 121 GGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182 (449)
T ss_pred CCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCC
Confidence 2 2456788877765431 1 11 12344455555678999999999998887766
No 201
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=26.68 E-value=4.4e+02 Score=23.13 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSNFSTKKLGDLL 169 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~ 169 (315)
.-+..+-+.|.++|+++|++-+ |.. -+.-++.++.+.+.+ .++..+.+....+.++.+.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~-----------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~ 79 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAM-----------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAAL 79 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCC-----------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH
Confidence 4556667779999999999952 211 122356677777643 4777777777788888776
Q ss_pred HHcCCCCccccccc--CCCc------c--h------HHHHHHHHhcCceEEE
Q 021241 170 EVACVPPAVNQVEC--HPSW------Q--Q------QKLREFCKSKGVHLSG 205 (315)
Q Consensus 170 ~~~~~~~~~~q~~~--~~~~------~--~------~~~~~~~~~~gi~via 205 (315)
+. ++ +.+.+.+ |..+ . + .+.+++|+++|+.+..
T Consensus 80 ~~-g~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 80 RC-GV--TAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred hC-Cc--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 64 33 3333322 2111 0 1 3578899999997653
No 202
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.64 E-value=4.2e+02 Score=24.59 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=58.9
Q ss_pred eEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEeec--cCCHhHHHHHHHHcC-CCCcccccc
Q 021241 110 LYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK----ARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVE 182 (315)
Q Consensus 110 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~ 182 (315)
.+-||.++........... ...++.++++++.+..++.. |+++=+. |.+.+++.++.+... ....++-++
T Consensus 206 aiSL~a~d~e~r~~i~p~~---~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIP 282 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTA---HRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIP 282 (343)
T ss_pred EEEcCCCCHHHHHHhcccc---ccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEc
Confidence 4567877654221110000 01567899999987766542 4566665 455556776666553 344566667
Q ss_pred cCCCcc------h----HHHHHHHHhcCceEEEecCCCC
Q 021241 183 CHPSWQ------Q----QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 183 ~~~~~~------~----~~~~~~~~~~gi~via~~pl~~ 211 (315)
||+... . ....+..+++|+.+......|.
T Consensus 283 ynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 283 FNPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 777542 1 2345567788999988877743
No 203
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=26.58 E-value=78 Score=22.88 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEeeccCCHhHHHHHHHHc
Q 021241 94 EALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GKARAIGVSNFSTKKLGDLLEVA 172 (315)
Q Consensus 94 ~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~ 172 (315)
..-+.-...||....|+..+..-.+. ...+.+.+.|...++. |+ +.+...+.+++..+
T Consensus 14 ~~W~~Lar~Lgls~~~I~~i~~~~p~--------------~l~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~ 72 (83)
T cd08319 14 PEWEQVLLDLGLSQTDIYRCKENHPH--------------NVQSQIVEALVKWRQRFGK-------KATVQSLIQSLKAV 72 (83)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHc
Confidence 34556678899999999888642221 2347788899999875 54 66678888888888
Q ss_pred CCCCccccc
Q 021241 173 CVPPAVNQV 181 (315)
Q Consensus 173 ~~~~~~~q~ 181 (315)
++.+++.|+
T Consensus 73 ~~~~~~~~~ 81 (83)
T cd08319 73 EVDPSVLQF 81 (83)
T ss_pred CCCHHHHHh
Confidence 877776654
No 204
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.49 E-value=5.8e+02 Score=24.44 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=62.9
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC-CccceEeecCCCCccCCCCCCCC
Q 021241 50 QIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI-DYLDLYLMHWPVKMKKGSVGFKP 128 (315)
Q Consensus 50 ~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~-d~iDl~~lH~p~~~~~~~~~~~~ 128 (315)
-.||.++.|-++|++..+.. +.+-++|.|-+-. ..--+++..-+++.-++... ..+.++.++.|.......
T Consensus 65 ~V~Gg~~~L~~ai~~~~~~~--~p~~I~v~ttC~~-~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~----- 136 (435)
T cd01974 65 AVFGGQNNLIDGLKNAYAVY--KPDMIAVSTTCMA-EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHI----- 136 (435)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCEEEEeCCchH-hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHH-----
Confidence 35888889999998875443 4455667766532 33345555555554444321 147899998876532110
Q ss_pred CCCCCCCHHHHHHHHHH-HH-------HcCCeeEEe-ecc-CC-HhHHHHHHHHcCCCC
Q 021241 129 ENLDKPDIPSTWKAMEA-LY-------DSGKARAIG-VSN-FS-TKKLGDLLEVACVPP 176 (315)
Q Consensus 129 ~~~~~~~~~~~~~~L~~-l~-------~~G~ir~iG-vs~-~~-~~~l~~~~~~~~~~~ 176 (315)
.-...++++|-+ +. +.++|-=|| ..+ .+ .+++.++++..++++
T Consensus 137 -----~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 137 -----TGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred -----HHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 112333333322 21 234466665 222 22 578888888877654
No 205
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=26.32 E-value=4.6e+02 Score=25.89 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----------CeeEEeeccC
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG----------KARAIGVSNF 160 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G----------~ir~iGvs~~ 160 (315)
.-+..+-+.|.++|+|+|.+-+ |.. ..+-+++++.+.+.+ ..+-.+++..
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~---Pa~-----------------s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~ 165 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF---PGS-----------------SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC 165 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCC-----------------CHHHHHHHHHHHHhcccccccccccceEEeeeccc
Confidence 3456677889999999998854 322 123344455554432 1344466777
Q ss_pred CHhHHHHHHHHcC-CCCcccc--cccCCCc-------ch-------HHHHHHHHhcCceEEEecCC
Q 021241 161 STKKLGDLLEVAC-VPPAVNQ--VECHPSW-------QQ-------QKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 161 ~~~~l~~~~~~~~-~~~~~~q--~~~~~~~-------~~-------~~~~~~~~~~gi~via~~pl 209 (315)
....++.+++... .....+. +..|..+ .. .+.+++++++|...+.+++-
T Consensus 166 ~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E 231 (503)
T PLN03228 166 KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE 231 (503)
T ss_pred CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc
Confidence 7777777776521 0111111 1112111 11 46788999999865666653
No 206
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=26.25 E-value=4.6e+02 Score=23.19 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=43.2
Q ss_pred HHHHHHHHHHc-CCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecC
Q 021241 139 TWKAMEALYDS-GKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 139 ~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~p 208 (315)
+...++.+++. +. -+.+-+++++.++++++.+ . ..+|-+.. .. ..++++.++++|..++.+.-
T Consensus 63 l~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G-~-~iINsis~--~~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 63 VVPVIKALRDQPDV--PISVDTYRAEVARAALEAG-A-DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC-C-CEEEECCC--CC-CchhHHHHHHcCCcEEEEeC
Confidence 45555556555 43 4888899999999999873 2 23333332 22 46789999999999999543
No 207
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.17 E-value=4.4e+02 Score=24.66 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcC----CeeEEeec--cCCHhHHHHHHHHcC-CCCcccccccCCCcch----------HHHHHHH
Q 021241 134 PDIPSTWKAMEALYDSG----KARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQVECHPSWQQ----------QKLREFC 196 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G----~ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~ 196 (315)
.+.++++++++.+.+.+ +|+++=+. |.+.+++.++.+... .+..++-++||+.... ..+.+.+
T Consensus 243 ~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 243 YPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 56799999999997744 24555444 455577777776653 3456666778776521 2456668
Q ss_pred HhcCceEEEecCCCC
Q 021241 197 KSKGVHLSGYSPLGS 211 (315)
Q Consensus 197 ~~~gi~via~~pl~~ 211 (315)
+++|+.+......|.
T Consensus 323 ~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 323 KKNGVNCTIRREHGT 337 (356)
T ss_pred HHCCCcEEEeCCCCc
Confidence 888999888777643
No 208
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.95 E-value=2.8e+02 Score=20.57 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHHHHHc-CCeeEEeeccCCHhHHHHHHHHcCCC-------------CcccccccCCCcchHHHHHHHHhcCceEEEe
Q 021241 141 KAMEALYDS-GKARAIGVSNFSTKKLGDLLEVACVP-------------PAVNQVECHPSWQQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 141 ~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~~~~~~~~~gi~via~ 206 (315)
..+..+.+. ..+.-.|+++-+++..+.+.+..+.+ ++++-+- ++-....+.+..|-++|+.|+.=
T Consensus 14 ~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~-tp~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 14 RHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA-TPPSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp HHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE-SSGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe-cCCcchHHHHHHHHHcCCEEEEE
Confidence 345566666 67888899999988877765554432 1222111 11222367889999999999999
Q ss_pred cCCCCCCCCCCCCccCCChHHHHHHHHhCC
Q 021241 207 SPLGSPGTTWIKSDVLKHPVVNMVAEKLGK 236 (315)
Q Consensus 207 ~pl~~gg~~~~~~~~~~~~~l~~la~~~~~ 236 (315)
.|++. .......+.+++++.|.
T Consensus 93 KP~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 93 KPLAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSSS--------SHHHHHHHHHHHHHHTS
T ss_pred cCCcC--------CHHHHHHHHHHHHHhCC
Confidence 99964 34445667777777765
No 209
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.89 E-value=5.6e+02 Score=24.12 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHHHHHHc------CCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEecCC
Q 021241 139 TWKAMEALYDS------GKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 139 ~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~~pl 209 (315)
-++.+.+|++. +.=-..|=|.++...+.++++... .+++|+..+-.- ....+.++|+.+|+.++..+..
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a--~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGA--AHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCC--CCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 36677777665 333456666677888888877643 377777665432 2367888899999999987654
No 210
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.80 E-value=5.4e+02 Score=23.82 Aligned_cols=35 Identities=3% Similarity=-0.056 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCeeEEeecc-CCHhHHHHHHHHcCC
Q 021241 140 WKAMEALYDSGKARAIGVSN-FSTKKLGDLLEVACV 174 (315)
Q Consensus 140 ~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~ 174 (315)
|+....+++.=++-=|++.+ .+++.++++++....
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~ 309 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHA 309 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 45555555554566666666 467888888876543
No 211
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.78 E-value=5.4e+02 Score=23.83 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEeecc---CCH
Q 021241 87 HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GKARAIGVSN---FST 162 (315)
Q Consensus 87 ~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~---~~~ 162 (315)
++.+ -...+-+.|.+.|+++|.+-+.-... .. .+... ....+. ++.++.+++. ...+...+.. .+.
T Consensus 22 f~~~-~~~~i~~~L~~aGv~~IEvg~~~g~g---~~--s~~~g-~~~~~~---~e~i~~~~~~~~~~~~~~ll~pg~~~~ 91 (337)
T PRK08195 22 YTLE-QVRAIARALDAAGVPVIEVTHGDGLG---GS--SFNYG-FGAHTD---EEYIEAAAEVVKQAKIAALLLPGIGTV 91 (337)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeecCCCCC---Cc--cccCC-CCCCCH---HHHHHHHHHhCCCCEEEEEeccCcccH
Confidence 4443 44556666999999999996421100 00 00000 000233 3444444322 2345444332 245
Q ss_pred hHHHHHHHHcCCCCcccccccCCCc--chHHHHHHHHhcCceEEEecCC
Q 021241 163 KKLGDLLEVACVPPAVNQVECHPSW--QQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 163 ~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~gi~via~~pl 209 (315)
+.++.+.+. ++ +.+.+..+.-. .-.+.+++++++|..+...-..
T Consensus 92 ~dl~~a~~~-gv--d~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 92 DDLKMAYDA-GV--RVVRVATHCTEADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHc-CC--CEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 666666553 23 44443333222 2257888999999887765433
No 212
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=25.61 E-value=2.7e+02 Score=21.30 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC--CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ--IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS 149 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 149 (315)
+|=-+.|+-|..........+++.+.++.+.+. ....|++++-.+...+ .+..++.+.|..|.+.
T Consensus 45 ~R~G~~VsKK~~g~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~-------------~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 45 PRLGLTVAKKNVKRAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVAD-------------LDNRELFELLEKLWRR 111 (114)
T ss_pred cEEEEEEEcccCcchhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCccc-------------CCHHHHHHHHHHHHHH
Confidence 454466666644444566778888888887654 2356998887665432 6678888888777653
No 213
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=25.57 E-value=2.9e+02 Score=24.86 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEeeccCCH------------hHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCc
Q 021241 136 IPSTWKAMEALYDSGKARAIGVSNFST------------KKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGV 201 (315)
Q Consensus 136 ~~~~~~~L~~l~~~G~ir~iGvs~~~~------------~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi 201 (315)
+...++...+++.+|++-.||=+...- +.+..+++.+..-=..+|++.--.... .++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 455677888999999999888776542 334445555543223456554333332 567888888886
No 214
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=25.57 E-value=67 Score=20.32 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcCCeeecCCCCHHHHHHhhccC
Q 021241 227 VNMVAEKLGKTPAQVCLRWGLQMGNSLLPKSTNEVRMKENLDVF 270 (315)
Q Consensus 227 l~~la~~~~~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a~ 270 (315)
++++|+..|+|++.+. .+|..+ .-++..+.+++.+.++.+
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~--~~vs~~tr~rI~~~a~~l 41 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGP--PRVSEETRERILEAAEEL 41 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTC--SSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHH--HHHhCC--CCCCHHHHHHHHHHHHHH
Confidence 6789999999998854 455543 233444455555544433
No 215
>TIGR00035 asp_race aspartate racemase.
Probab=25.12 E-value=3.2e+02 Score=23.49 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhH-HHHH
Q 021241 90 EDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKK-LGDL 168 (315)
Q Consensus 90 ~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~-l~~~ 168 (315)
+.+++=++..=.+.+-++++.+.+++|+..+......... .......+.+.++.|.+.| +..|-++..+... ++++
T Consensus 17 ~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~--~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 17 ELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRG--EDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCC--cchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHHH
Confidence 4455556666677888999999999987543211100000 0023455667777776655 7899988877655 4444
Q ss_pred HH
Q 021241 169 LE 170 (315)
Q Consensus 169 ~~ 170 (315)
.+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 43
No 216
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=25.11 E-value=4.2e+02 Score=22.30 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=33.1
Q ss_pred HHHHHcCC-eeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch---HHHHHHHHhcC----ceEEE
Q 021241 144 EALYDSGK-ARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ---QKLREFCKSKG----VHLSG 205 (315)
Q Consensus 144 ~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~g----i~via 205 (315)
.-|+..|. |.++| .+.+.+.+.+.... .+|+++-+.++....- .++++.+++.+ +.|+.
T Consensus 104 ~~l~~~G~~vi~lG-~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~v 170 (201)
T cd02070 104 TMLEANGFEVIDLG-RDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMV 170 (201)
T ss_pred HHHHHCCCEEEECC-CCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEE
Confidence 34556663 56777 45555566555544 3566666665443332 45667777664 45554
No 217
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.07 E-value=4.8e+02 Score=23.02 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=28.6
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCCCCc
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIY 52 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Y 52 (315)
+|+.|.+.+.. .++.++..++++...++||..|+.....
T Consensus 5 TlRDG~Q~~~~-----~~~~~~k~~i~~~L~~~Gv~~iEvg~~~ 43 (268)
T cd07940 5 TLRDGEQTPGV-----SLTPEEKLEIARQLDELGVDVIEAGFPA 43 (268)
T ss_pred CCCccccCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 35556555532 4566888999999999999999987544
No 218
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.03 E-value=2e+02 Score=27.95 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=40.2
Q ss_pred HHHcCCCccceEeec-CCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec-cCCHhHHHHHHHHcCCCCc
Q 021241 100 LRDLQIDYLDLYLMH-WPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS-NFSTKKLGDLLEVACVPPA 177 (315)
Q Consensus 100 L~rLg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~ 177 (315)
...+|.|++=+++.. .|.. .+.+..-+-...+ . ++.+||- |-+++.+.++++.. .++
T Consensus 273 a~~~GaD~lGfIf~~~SpR~---------------V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~~--~lD 331 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRY---------------VSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQL--SLA 331 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCC---------------CCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHHc--CCC
Confidence 345888888886433 2221 3333332222222 2 8889987 78888888887764 569
Q ss_pred ccccccC
Q 021241 178 VNQVECH 184 (315)
Q Consensus 178 ~~q~~~~ 184 (315)
++|++-+
T Consensus 332 ~vQLHG~ 338 (454)
T PRK09427 332 AVQLHGD 338 (454)
T ss_pred EEEeCCC
Confidence 9998864
No 219
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.99 E-value=1.7e+02 Score=24.92 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCeeEEeecc-CCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 141 KAMEALYDSGKARAIGVSN-FSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 141 ~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
+.++.++++--=-.||..+ .+.++++++++.+ ..+ -.+| .-+++++++|+++|+.++.
T Consensus 48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~F-----ivSP-~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQF-----IVSP-GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SE-----EEES-S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCE-----EECC-CCCHHHHHHHHHcCCcccC
Confidence 4444444322113588877 6778888888764 222 2233 2346899999999999887
No 220
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=24.98 E-value=1.9e+02 Score=28.83 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEee
Q 021241 90 EDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGV 157 (315)
Q Consensus 90 ~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 157 (315)
+...+-++..++..+-.+.+ -|-.. .+|+. ..+.+..+-|-+++++|+||++.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~iv------vGFs~-----~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIV------VGFSH-----ESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeE------EeecH-----HHHHHHHHHHHHHHhcCCcceEEE
Confidence 45677788888888766666 22111 11111 345666777888899999998753
No 221
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.97 E-value=4.9e+02 Score=24.31 Aligned_cols=90 Identities=16% Similarity=0.301 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEeeccCCHhHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK-ARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|+++|.+- +|.. .++-++.++.+.+.+. .+-.+.+......++.+.+
T Consensus 23 ~k~~ia~~L~~~Gv~~IEvG---~p~~-----------------~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEAG---FPIA-----------------SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC-----------------ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 34566677999999999974 2321 1233677777776554 5555666667788888766
Q ss_pred HcCCCCccccc--ccCCCc-------c-------hHHHHHHHHhcCceEE
Q 021241 171 VACVPPAVNQV--ECHPSW-------Q-------QQKLREFCKSKGVHLS 204 (315)
Q Consensus 171 ~~~~~~~~~q~--~~~~~~-------~-------~~~~~~~~~~~gi~vi 204 (315)
. +. +.+.+ ..|..+ . -.+.+++++++|..+.
T Consensus 83 ~-g~--~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 83 C-GV--DSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred c-Cc--CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4 33 23333 222221 1 1357888999998764
No 222
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=24.95 E-value=2.2e+02 Score=25.75 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (315)
..++.+.-.+.-++ ..++++|..|...- ++....++|+.|.++.++|. +.|=+|+|..+.++.+++
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GL-----------Dp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGL-----------DPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCC-----------CHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 45555555555554 45888888876542 22567899999999999997 678899999999887744
No 223
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.93 E-value=5.1e+02 Score=23.24 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccC-CH---hHHHHHHHHc-CCCCcccccccCCCcchHHHHHHHHhcCceEEEecC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNF-ST---KKLGDLLEVA-CVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~---~~l~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~p 208 (315)
.....+++.++++++++.---|++-.| ++ ..++++++.+ ....+-+-++=-|.....++.++|+++||..+-.-+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 567888888888887754333333332 21 2233322222 112233333333444456799999999999887665
Q ss_pred CCCCCCCCCCCccCCChHHHHHHHHh----------CCCHHHHH--------HHHHHhc---CCeeecCCCCHHHHHHhh
Q 021241 209 LGSPGTTWIKSDVLKHPVVNMVAEKL----------GKTPAQVC--------LRWGLQM---GNSLLPKSTNEVRMKENL 267 (315)
Q Consensus 209 l~~gg~~~~~~~~~~~~~l~~la~~~----------~~s~aq~a--------l~~~l~~---~~~~i~g~~~~~~l~enl 267 (315)
-.. ..+.++++++.- |+|-++.. ++.+.++ |..+=.|.++++|+++..
T Consensus 156 Ptt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~ 224 (265)
T COG0159 156 PTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVA 224 (265)
T ss_pred CCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHH
Confidence 522 246777777653 44433222 3333333 234446789999999988
Q ss_pred ccCCC-CCCHHHHHHHHc
Q 021241 268 DVFDW-SIPEDLLAKFSG 284 (315)
Q Consensus 268 ~a~~~-~L~~~~~~~l~~ 284 (315)
++.+- ---.+-++.|++
T Consensus 225 ~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 225 EAADGVIVGSAIVKIIEE 242 (265)
T ss_pred HhCCeEEEcHHHHHHHHh
Confidence 87553 333444444443
No 224
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.83 E-value=6.6e+02 Score=24.55 Aligned_cols=102 Identities=7% Similarity=0.090 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeecc----C--
Q 021241 88 EPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSN----F-- 160 (315)
Q Consensus 88 ~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~----~-- 160 (315)
+++.+.+.++...++.|+.++ .+...... .+...+.+.++++++.| .--.+++++ .
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~--------------~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~ 285 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFF---ILADEEPT--------------INRKKFQEFCEEIIARNPISVTWGINTRVTDIVR 285 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEE---EEEecccc--------------cCHHHHHHHHHHHHhcCCCCeEEEEecccccccC
Confidence 567788888888888886654 23221111 33455667778888887 323344332 1
Q ss_pred CHhHHHHHHHHcCCCCcccccccCCCcc--------------hHHHHHHHHhcCceEEEecCC
Q 021241 161 STKKLGDLLEVACVPPAVNQVECHPSWQ--------------QQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~--------------~~~~~~~~~~~gi~via~~pl 209 (315)
+. .+.+++..+++ ..+++.+--.++ ..+.++.|+++||.+.+.--+
T Consensus 286 d~-ell~~l~~aG~--~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 286 DA-DILHLYRRAGL--VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CH-HHHHHHHHhCC--cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 22 33344444443 222222211111 146788999999988776666
No 225
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=24.57 E-value=77 Score=29.31 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCC-----eeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 137 PSTWKAMEALYDSGK-----ARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 137 ~~~~~~L~~l~~~G~-----ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
.=+++-|++|+++|. .-|+|..+|.+-..+.+.+. ..+....+ +-....+.+..++++|-.|+|-++-
T Consensus 186 HFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH-~MH~E~~~----v~~eta~~i~~~k~~GgRIiaVGTT 258 (348)
T COG0809 186 HFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEH-KMHSEYYE----VPQETADAINAAKARGGRIIAVGTT 258 (348)
T ss_pred CCCHHHHHHHHHCCceEEEEEEEecccccccceecccccc-ccchhhee----cCHHHHHHHHHHHHcCCeEEEEcch
Confidence 346889999999985 45899999988766654332 11111111 2122257899999999999996654
No 226
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=24.53 E-value=49 Score=26.33 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=11.8
Q ss_pred HHHHHHHHccCCEEeC
Q 021241 33 NAVAAAIKAGYRHIDC 48 (315)
Q Consensus 33 ~~l~~Al~~Gi~~~DT 48 (315)
..+...++.|||+||-
T Consensus 30 ~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 30 WSIREQLESGIRYLDL 45 (146)
T ss_dssp HHHHHHHHTT--EEEE
T ss_pred HhHHHHHhccCceEEE
Confidence 4678899999999984
No 227
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=24.36 E-value=2.5e+02 Score=22.16 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC--CCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ--IDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS 149 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 149 (315)
.|=-+.|+-|..........+++.+.++.+... ..-.|++++-.+...+ .+..++.+.|..|.+.
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~-------------~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGE-------------LENPELHQQFGKLWKR 112 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCccc-------------CCHHHHHHHHHHHHHH
Confidence 354466666644445566788888888887654 2458999998765432 5667777777766543
No 228
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=24.36 E-value=5.1e+02 Score=25.29 Aligned_cols=17 Identities=0% Similarity=0.004 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCCccce
Q 021241 94 EALDRTLRDLQIDYLDL 110 (315)
Q Consensus 94 ~~~e~SL~rLg~d~iDl 110 (315)
..+-+.|.++|++.|++
T Consensus 28 l~Ia~~Ld~~Gv~~IE~ 44 (467)
T PRK14041 28 LPALEAFDRMGFYSMEV 44 (467)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 34555677778877777
No 229
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.18 E-value=4.5e+02 Score=22.41 Aligned_cols=99 Identities=18% Similarity=0.056 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcchHHHHHHHHhcCceEEEecCCCCCC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPLGSPG 213 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl~~gg 213 (315)
.+.++..+..+.|.+.| |+.|=|+.-++..++.+.+....-+.+.-.-=+++ +.+-.+.|.+.|..++. ||-.
T Consensus 13 ~~~~~a~~ia~al~~gG-i~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl--~~e~a~~ai~aGA~Fiv-SP~~--- 85 (201)
T PRK06015 13 DDVEHAVPLARALAAGG-LPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTIL--NAKQFEDAAKAGSRFIV-SPGT--- 85 (201)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCc--CHHHHHHHHHcCCCEEE-CCCC---
Confidence 44577777777777665 56777766665555444332211122111111111 23566777787877776 2321
Q ss_pred CCCCCCccCCChHHHHHHHHhC-------CCHHHHHHHHHHhc
Q 021241 214 TTWIKSDVLKHPVVNMVAEKLG-------KTPAQVCLRWGLQM 249 (315)
Q Consensus 214 ~~~~~~~~~~~~~l~~la~~~~-------~s~aq~al~~~l~~ 249 (315)
++.+-+.|++++ .||+++.-+|-+..
T Consensus 86 ----------~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga 118 (201)
T PRK06015 86 ----------TQELLAAANDSDVPLLPGAATPSEVMALREEGY 118 (201)
T ss_pred ----------CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCC
Confidence 235555555555 25566555554443
No 230
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.14 E-value=6e+02 Score=23.79 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=44.2
Q ss_pred HHHHHHHHccCCEEeCCCCcCC-HHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceE
Q 021241 33 NAVAAAIKAGYRHIDCAQIYGN-EKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLY 111 (315)
Q Consensus 33 ~~l~~Al~~Gi~~~DTA~~Yg~-E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~ 111 (315)
...+..-+.||+|+-++-.-.| ..+++..|++- .-+.++|---+ +.+.-. +-+-.+++|+=|||-+
T Consensus 51 k~~k~~~~~girfV~e~it~~Nyk~vL~pll~~~------~gqgf~vnLSv---d~~s~D----lmr~crk~~vLYidTv 117 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDNYKDVLKPLLKGV------GGQGFCVNLSV---DTSSLD----LMRLCRKHGVLYIDTV 117 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhhHHHHHHHHhhcC------CCceEEEEeEe---ccchhH----HHHHHHHcCeEEEeee
Confidence 4455566889999977644333 45555555542 34445554433 233333 3445568999999998
Q ss_pred eecCCCCc
Q 021241 112 LMHWPVKM 119 (315)
Q Consensus 112 ~lH~p~~~ 119 (315)
.=-|+-..
T Consensus 118 VEpW~gfy 125 (481)
T COG5310 118 VEPWLGFY 125 (481)
T ss_pred eccccccc
Confidence 77776443
No 231
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=24.13 E-value=5.6e+02 Score=23.44 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecc---------CCHhHHHHHHHHcCCCCcccccccCCC---cc-hHHHHHHHHhcCce
Q 021241 136 IPSTWKAMEALYDSGKARAIGVSN---------FSTKKLGDLLEVACVPPAVNQVECHPS---WQ-QQKLREFCKSKGVH 202 (315)
Q Consensus 136 ~~~~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~-~~~~~~~~~~~gi~ 202 (315)
...+.+.++.+++-|.++.|.+.+ .+.+.++.+.+ .+.. ..+-++.+-. .. ....++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~-~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT-SGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH-cCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 456778888888888876555543 23333444433 3322 2233333211 11 14577888999999
Q ss_pred EEEecCCCCC
Q 021241 203 LSGYSPLGSP 212 (315)
Q Consensus 203 via~~pl~~g 212 (315)
+...+++..|
T Consensus 230 v~~q~vLl~g 239 (321)
T TIGR03822 230 MVSQSVLLRG 239 (321)
T ss_pred EEEEeeEeCC
Confidence 9999999664
No 232
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.12 E-value=97 Score=19.30 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 021241 226 VVNMVAEKLGKTPAQVCLRWGLQ 248 (315)
Q Consensus 226 ~l~~la~~~~~s~aq~al~~~l~ 248 (315)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5688999999998776 788754
No 233
>PLN02389 biotin synthase
Probab=24.10 E-value=6.2e+02 Score=23.92 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCC----CcCC---HHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHH
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQ----IYGN---EKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDR 98 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~----~Yg~---E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~ 98 (315)
.+.++..+..+.+.+.|++.|-... ..+. -+.+-+.++.. +...+.|+...+ .+.+..-+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i------k~~~l~i~~s~G-------~l~~E~l~ 182 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI------RGMGMEVCCTLG-------MLEKEQAA 182 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH------hcCCcEEEECCC-------CCCHHHHH
Confidence 4667788888888899999874321 1121 13444555543 222344443321 22333444
Q ss_pred HHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 021241 99 TLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK 151 (315)
Q Consensus 99 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 151 (315)
.|+..|+|++-. +.+.. +. .+ ..-.....+++.++.++.+++.|.
T Consensus 183 ~LkeAGld~~~~----~LeTs-~~--~y-~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 183 QLKEAGLTAYNH----NLDTS-RE--YY-PNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHcCCCEEEe----eecCC-hH--Hh-CCcCCCCCHHHHHHHHHHHHHcCC
Confidence 555668776433 22210 00 00 000012568999999999999985
No 234
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.89 E-value=3.5e+02 Score=22.20 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHH-HHHccCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHH
Q 021241 34 AVAA-AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTL 100 (315)
Q Consensus 34 ~l~~-Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL 100 (315)
.|.. ..+.|++.....-.-.++..|-++|+.. ..+.+++|+|=. ...-..+.+.+++.+.+
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~-----~~~~dlVIttGG-~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRA-----SERADLVITTGG-LGPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH-----HhCCCEEEECCC-CCCCCCChHHHHHHHHh
Confidence 4444 4467998766544444677788888876 357899999932 22233455666666544
No 235
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.88 E-value=4e+02 Score=22.90 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHc-----cCCEEeCCCCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCC----------------
Q 021241 26 SDPGVVGNAVAAAIKA-----GYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWN---------------- 84 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~-----Gi~~~DTA~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~---------------- 84 (315)
.++++....+..+++. |+|--=.+-.-.++..+...++.. -.|.-+||=++..+
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l-----~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~ 145 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL-----KERGLFFVDSRTTPRSVAPQVAKELGVPAA 145 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH-----HHTT-EEEE-S--TT-SHHHHHHHCT--EE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH-----HHcCCEEEeCCCCcccHHHHHHHHcCCCEE
Confidence 4667788888888865 444332222222577777666654 14666777444311
Q ss_pred -------CCCCCCcHHHHHHHHHHHcCCCccceEeec
Q 021241 85 -------AYHEPEDVPEALDRTLRDLQIDYLDLYLMH 114 (315)
Q Consensus 85 -------~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH 114 (315)
...+.+.|++++++..+.-+..--=+..-|
T Consensus 146 ~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 146 RRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp E-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 224567788888888888777666677777
No 236
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=23.84 E-value=2.3e+02 Score=26.70 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCCCCcccccccCCCcch--HHHHHHHHhcCceEEEecCCCCCCCC
Q 021241 138 STWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSWQQ--QKLREFCKSKGVHLSGYSPLGSPGTT 215 (315)
Q Consensus 138 ~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~via~~pl~~gg~~ 215 (315)
+-.+++.+|.+.|.+.+|-.--...-.+..+...-...|. --|.+...+ ..+++.|+++||.||.-+ ||.
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na----Gg~- 81 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA----GGL- 81 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC----CCC-
Confidence 3457888888999999997643332222222111111111 113222222 578999999999999863 221
Q ss_pred CCCCccCCChHHHHHHHHhCCC
Q 021241 216 WIKSDVLKHPVVNMVAEKLGKT 237 (315)
Q Consensus 216 ~~~~~~~~~~~l~~la~~~~~s 237 (315)
. ..--.+.++++++++|.+
T Consensus 82 n---p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 N---PAGCADIVREIARELGLS 100 (362)
T ss_pred C---HHHHHHHHHHHHHhcCCC
Confidence 1 111235667777776654
No 237
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.74 E-value=6.3e+02 Score=23.90 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCC
Q 021241 50 QIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPE 129 (315)
Q Consensus 50 ~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
-.||.++.|-++|++..+.. +.+-++|.|-+. ...--+++..-+++.-++.+ +.++.+|.|.......
T Consensus 66 ~VfGg~~~L~~~i~~~~~~~--~P~~i~v~~tC~-~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------ 133 (410)
T cd01968 66 VIFGGEKKLYKAILEIIERY--HPKAVFVYSTCV-VALIGDDIDAVCKTASEKFG---IPVIPVHSPGFVGNKN------ 133 (410)
T ss_pred eeeccHHHHHHHHHHHHHhC--CCCEEEEECCCc-hhhhccCHHHHHHHHHHhhC---CCEEEEECCCcccChh------
Confidence 35888999999998876543 445566766653 33334556666655544543 6788899776532110
Q ss_pred CCCCCCHHHHHHHHHHHH---------HcCCeeEEeeccCC--HhHHHHHHHHcCCCC
Q 021241 130 NLDKPDIPSTWKAMEALY---------DSGKARAIGVSNFS--TKKLGDLLEVACVPP 176 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~l~---------~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~ 176 (315)
.-...++++|-+.. +++.|--||-.++. ...+.++++..++++
T Consensus 134 ----~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 187 (410)
T cd01968 134 ----LGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRV 187 (410)
T ss_pred ----HHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeE
Confidence 22333444443332 14678888844433 357888888876543
No 238
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.73 E-value=5.9e+02 Score=23.57 Aligned_cols=116 Identities=10% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCc---------C------------CHHHHHHHHHhhhhcCCCCCCceEEEeccCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIY---------G------------NEKEIGLVLKKFFEDAVVKREDLWITSKLWN 84 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Y---------g------------~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~ 84 (315)
++.++...+.+++-+.|+.+|=|.-.- | +-.+| +.+.+ ....++|+|-.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL-~~~A~-------~gkPvilStGm-- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLL-KKIAR-------FGKPVILSTGM-- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHH-HHHHh-------cCCcEEEECCC--
Confidence 566778888889999999988664321 1 11211 22222 23456776665
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHH-HHHHHHHHHHcCCeeEEeeccCCHh
Q 021241 85 AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPS-TWKAMEALYDSGKARAIGVSNFSTK 163 (315)
Q Consensus 85 ~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~G~ir~iGvs~~~~~ 163 (315)
.+.+.+..+++...+ -|.+--|+.++|....+. .+..+ -+.++..|++.=. .-||+|.|+..
T Consensus 143 --atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP-------------~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G 205 (329)
T TIGR03569 143 --ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYP-------------APFEDVNLNAMDTLKEAFD-LPVGYSDHTLG 205 (329)
T ss_pred --CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCC-------------CCcccCCHHHHHHHHHHhC-CCEEECCCCcc
Confidence 245677777776643 343212599999765321 11111 2455555555322 47999999876
Q ss_pred HHHHH
Q 021241 164 KLGDL 168 (315)
Q Consensus 164 ~l~~~ 168 (315)
....+
T Consensus 206 ~~~~~ 210 (329)
T TIGR03569 206 IEAPI 210 (329)
T ss_pred HHHHH
Confidence 44333
No 239
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.52 E-value=5.3e+02 Score=24.96 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=60.9
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC-CCccceEeecCCCCccCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ-IDYLDLYLMHWPVKMKKGSVGFKPE 129 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~ 129 (315)
.||.++.|-++|++..+.. +.+-++|.|-+-. ..--+++..-+++.-++.. ..-+.++.++.|.......
T Consensus 73 VfGg~~~L~~aI~~~~~~~--~P~~I~V~ttC~~-eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~------ 143 (455)
T PRK14476 73 ILGGDENVEEAILNICKKA--KPKIIGLCTTGLT-ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALE------ 143 (455)
T ss_pred EeCCHHHHHHHHHHHHHhh--CCCEEEEeCcchH-hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH------
Confidence 5888888889988865442 4455666666522 2223444444444333321 1136788888887532100
Q ss_pred CCCCCCHHHHHHHHHH-HH--------HcCCeeEEeeccC---CHhHHHHHHHHcCCCC
Q 021241 130 NLDKPDIPSTWKAMEA-LY--------DSGKARAIGVSNF---STKKLGDLLEVACVPP 176 (315)
Q Consensus 130 ~~~~~~~~~~~~~L~~-l~--------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~ 176 (315)
.-....+++|-+ +. ++++|--||-+++ +.+.+.++++..++++
T Consensus 144 ----~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 144 ----DGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred ----HHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 112223333322 21 3456888875543 4467777777776644
No 240
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=23.33 E-value=4e+02 Score=24.00 Aligned_cols=218 Identities=15% Similarity=0.148 Sum_probs=95.0
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcC-C--------------HHHHHHHHHhhhhc-CC-CCCCceEEEeccCCCC---
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYG-N--------------EKEIGLVLKKFFED-AV-VKREDLWITSKLWNAY--- 86 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~--------------E~~lG~al~~~~~~-~~-~~R~~v~i~tK~~~~~--- 86 (315)
.++...++=+..+++|-+.+-|.. |+ + ++++-.+++-.-+. .. ...++++|+--+++..
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l 117 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTNT-YQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYL 117 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC--TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S---
T ss_pred CHHHHHHHHHHHHHCCCCeEEecC-CcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccc
Confidence 345556666678899999998865 43 2 33333333211000 10 0122477776665321
Q ss_pred ----------CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEe
Q 021241 87 ----------HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIG 156 (315)
Q Consensus 87 ----------~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 156 (315)
.+.+.+++...+.++.|--..+|++++-..... .....+.+++++.. ++--.++
T Consensus 118 ~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~--------------~E~~aa~~a~~~~~--~~p~~is 181 (305)
T PF02574_consen 118 SGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSL--------------AEAKAALEAIKEVT--GLPVWIS 181 (305)
T ss_dssp -----CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-C--------------SCHHHHHHHHHHHH--HCCSSEE
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHH--------------HHHHHHHHHHHhhh--hhhceec
Confidence 234567777777777775556999999854322 23455555555532 3333334
Q ss_pred eccCC-------------HhHHHHHHHHcCCCCcccccccCCCcch-HHHHHHHHh-cCceEEEecCCCCCCCCCCCCcc
Q 021241 157 VSNFS-------------TKKLGDLLEVACVPPAVNQVECHPSWQQ-QKLREFCKS-KGVHLSGYSPLGSPGTTWIKSDV 221 (315)
Q Consensus 157 vs~~~-------------~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~-~gi~via~~pl~~gg~~~~~~~~ 221 (315)
++-.. ...++.+.......++.+-+++...... ..+...... .++.+++|--. |........
T Consensus 182 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNs---G~~~~~~~~ 258 (305)
T PF02574_consen 182 FSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNS---GEPYDVGKV 258 (305)
T ss_dssp E-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--S---BS-TTSSGG
T ss_pred cchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCC---CCCcccccc
Confidence 33211 2333333322223455665555544333 334444433 38888887543 211111100
Q ss_pred CCChHHHHHHHHhCCCHHHHHHHHHHhcCCeeecCC--CCHHHHHHhhccC
Q 021241 222 LKHPVVNMVAEKLGKTPAQVCLRWGLQMGNSLLPKS--TNEVRMKENLDVF 270 (315)
Q Consensus 222 ~~~~~l~~la~~~~~s~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~ 270 (315)
+.. .-..++ .+..+.+-.|+-+ +..+|=|. ++|+||++..+.+
T Consensus 259 ~~~-~~~~~~----~~~~~~~~~~~~~-G~~iiGGCCGt~P~hI~al~~~l 303 (305)
T PF02574_consen 259 WSE-TPEDFA----PEWAEFVKEWVEA-GARIIGGCCGTTPEHIRALAKAL 303 (305)
T ss_dssp STT-TTTSHG----GG-HHHHHHHHHH-HHCEE---TT--HHHHHHHHHHT
T ss_pred ccc-chhhhH----HHHHHHHHHHHHh-CCEEEEeCCCCCHHHHHHHHHHh
Confidence 000 000010 0123456666443 33455454 8899988876554
No 241
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=23.33 E-value=4.9e+02 Score=22.54 Aligned_cols=110 Identities=8% Similarity=0.015 Sum_probs=73.5
Q ss_pred eccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC------ee
Q 021241 80 SKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK------AR 153 (315)
Q Consensus 80 tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~------ir 153 (315)
+|....+.........++..-+...-..|+-+++-..... .+..|.+...+.|.+.|. ..
T Consensus 66 sky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~--------------~sYnEp~tM~kdL~~~GVp~~~i~lD 131 (235)
T COG2949 66 SKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNAT--------------VSYNEPRTMRKDLIAAGVPAKNIFLD 131 (235)
T ss_pred cccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecCCCc--------------ccccchHHHHHHHHHcCCCHHHeeec
Confidence 4444443444567788888888888889999999865443 556788889999999995 45
Q ss_pred EEeeccCCHhHHHHHHHHcCC-CCcccccccCCCcchHHHHHHHHhcCceEEEecCC
Q 021241 154 AIGVSNFSTKKLGDLLEVACV-PPAVNQVECHPSWQQQKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 154 ~iGvs~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~via~~pl 209 (315)
|-|+++.+ .+.++.+..+. ++.++--+| +.+..+=.|+.+||.-+++..-
T Consensus 132 yAGFrTLD--SvvRA~kVF~~~~ftIItQ~F----HceRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 132 YAGFRTLD--SVVRARKVFGTNDFTIITQRF----HCERALFIARQMGIDAICFAAP 182 (235)
T ss_pred ccCccHHH--HHHHHHHHcCcCcEEEEeccc----ccHHHHHHHHHhCCceEEecCC
Confidence 77777654 45555555442 222221111 2245677899999999998755
No 242
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=23.32 E-value=1.1e+02 Score=28.40 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccCCHh-----HHHHHHHHcCCC--Ccc------------cccccCCCcchHHHHH
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNFSTK-----KLGDLLEVACVP--PAV------------NQVECHPSWQQQKLRE 194 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~-----~l~~~~~~~~~~--~~~------------~q~~~~~~~~~~~~~~ 194 (315)
.+..++++.++++.+.+.++-|.+-.|.+- .++++.++..-+ ... .|-.|+.- ....+.+
T Consensus 139 vs~~~~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~-~r~~i~~ 217 (377)
T COG3454 139 VSHPATLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDP-NRQAIAA 217 (377)
T ss_pred cCChhHHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccc-hHHHHHH
Confidence 556789999999999999999999998872 344444332111 111 11112211 1246888
Q ss_pred HHHhcCceEEEec
Q 021241 195 FCKSKGVHLSGYS 207 (315)
Q Consensus 195 ~~~~~gi~via~~ 207 (315)
.|+++||.+-++-
T Consensus 218 ~c~~rgI~lASHD 230 (377)
T COG3454 218 LCRERGIALASHD 230 (377)
T ss_pred HHHHcCCceecCC
Confidence 9999999876643
No 243
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.30 E-value=1.7e+02 Score=22.08 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHHHHccCCEEeCCCCcC--CHHHHHHHHHhhhhcCCCCCCceEEEecc-CCC-----------------CCCCC
Q 021241 31 VGNAVAAAIKAGYRHIDCAQIYG--NEKEIGLVLKKFFEDAVVKREDLWITSKL-WNA-----------------YHEPE 90 (315)
Q Consensus 31 ~~~~l~~Al~~Gi~~~DTA~~Yg--~E~~lG~al~~~~~~~~~~R~~v~i~tK~-~~~-----------------~~~~~ 90 (315)
.....--.+++|.-|+-|-..|. .|-++---|-+ ..++++|++|+ |.+ +..-.
T Consensus 22 LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~ 94 (117)
T COG3215 22 LYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGL 94 (117)
T ss_pred HHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceEEEEccCCCCCCCCceeeeccCCCchh
Confidence 34444456799999999999996 55554433333 35689999998 221 11123
Q ss_pred cHHHHHHHHHHH
Q 021241 91 DVPEALDRTLRD 102 (315)
Q Consensus 91 ~i~~~~e~SL~r 102 (315)
.++.++|.-|-.
T Consensus 95 ~vr~~IE~~Lg~ 106 (117)
T COG3215 95 KVRNQIETLLGG 106 (117)
T ss_pred hHHHHHHHHHHh
Confidence 688888877743
No 244
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=23.25 E-value=2.1e+02 Score=21.89 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=43.0
Q ss_pred hhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021241 66 FEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEA 145 (315)
Q Consensus 66 ~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 145 (315)
+++|.+.|+-+++.-- .-..+...+...+...++.-....+-=-.+-.|+.. --..+..+.|.+
T Consensus 34 LkEgdIL~e~I~~k~~--~v~~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~E--------------GLs~E~IE~Lk~ 97 (110)
T PF06819_consen 34 LKEGDILGEIIYEKDD--GVYRDRSSFFKRFKFALKTEDGSALTGEKIISTDAE--------------GLSKEDIEKLKK 97 (110)
T ss_pred cCccceehheEEEeCC--cEEEecccHHHHHHHHHHhcccccccCCeEEecccc--------------CCCHHHHHHHHH
Confidence 3446677777665322 122345677778888877766555420111222221 224788999999
Q ss_pred HHHcCCee
Q 021241 146 LYDSGKAR 153 (315)
Q Consensus 146 l~~~G~ir 153 (315)
|+++||+.
T Consensus 98 Lv~eGKi~ 105 (110)
T PF06819_consen 98 LVEEGKIE 105 (110)
T ss_pred HHHcCCCc
Confidence 99999985
No 245
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.12 E-value=6e+02 Score=23.48 Aligned_cols=128 Identities=15% Similarity=0.181 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcCCHHHHHHHHHhhhhcC-CCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCC
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDA-VVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQI 105 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~~-~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~ 105 (315)
+.++..++++.+.+.|++=|=-+ |-|..+-+-|...++.= ...-.++-++|-. .........|+.-|+
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlT---GGEPllR~dl~eIi~~l~~~~~~~islTTNG--------~~L~~~a~~Lk~AGl 112 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLT---GGEPLLRKDLDEIIARLARLGIRDLSLTTNG--------VLLARRAADLKEAGL 112 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEe---CCCchhhcCHHHHHHHHhhcccceEEEecch--------hhHHHHHHHHHHcCC
Confidence 56889999999999999877644 44544444443332110 0013556666653 445566777888887
Q ss_pred CccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEeeccCCHhHHHHHHHHc
Q 021241 106 DYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK----ARAIGVSNFSTKKLGDLLEVA 172 (315)
Q Consensus 106 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~ 172 (315)
++|.+ -||..++..-... . ....+..+++.+++.++.|. |-.+=+-+.+..++..+++.+
T Consensus 113 ~rVNV-SLDsld~e~f~~I----T--~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~ 176 (322)
T COG2896 113 DRVNV-SLDSLDPEKFRKI----T--GRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFA 176 (322)
T ss_pred cEEEe-ecccCCHHHHHHH----h--CCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 77654 3443332100000 0 00236777888888877774 334444455555555554443
No 246
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.99 E-value=6.9e+02 Score=24.09 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEeecc-----CC----HhHHHHHHHHcC-CCCcccccccCCCcc---hHHHHHHHHh
Q 021241 132 DKPDIPSTWKAMEALYDSGKARAIGVSN-----FS----TKKLGDLLEVAC-VPPAVNQVECHPSWQ---QQKLREFCKS 198 (315)
Q Consensus 132 ~~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~----~~~l~~~~~~~~-~~~~~~q~~~~~~~~---~~~~~~~~~~ 198 (315)
...+.+++++.++.|++.| ++.|-+.. |. ...+.++++... ... ...+.++...+ ..++++..++
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G-~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~-~~rir~~~~~p~~l~~ell~~~~~ 253 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAG-YREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAP-EMRIRFTTSHPKDISESLVRTIAA 253 (445)
T ss_pred cCCCHHHHHHHHHHHHHCC-CeEEEEeecccchhhccCCCchHHHHHHHHhhcCC-CcEEEEccCChhhcCHHHHHHHHh
Confidence 3477899999999999987 45554421 11 122444444321 111 12344433333 3678888877
Q ss_pred c
Q 021241 199 K 199 (315)
Q Consensus 199 ~ 199 (315)
.
T Consensus 254 ~ 254 (445)
T PRK14340 254 R 254 (445)
T ss_pred C
Confidence 5
No 247
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.94 E-value=5.7e+02 Score=23.10 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHH-----HHHHHHHHHcCCeeEEeeccCCHhH----HHHHHH
Q 021241 100 LRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPST-----WKAMEALYDSGKARAIGVSNFSTKK----LGDLLE 170 (315)
Q Consensus 100 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l~~~G~ir~iGvs~~~~~~----l~~~~~ 170 (315)
++-++-.++|+..+..+... ....+. -+.+.++..+--=|++|+.+.++.. .+++.+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~--------------~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er 120 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEV--------------AIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELER 120 (293)
T ss_pred HhhhcccccceEEeeccccc--------------cchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHH
Confidence 77888889999988841111 111222 2467777777778899999888753 222222
Q ss_pred HcCCCCcccccccCCCcch--------HHHHHHHHhcCceEEEecCCC
Q 021241 171 VACVPPAVNQVECHPSWQQ--------QKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 171 ~~~~~~~~~q~~~~~~~~~--------~~~~~~~~~~gi~via~~pl~ 210 (315)
... ..-++++.+++..+. ..+.++|+++|+.|+-+.-..
T Consensus 121 ~v~-~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 121 RVR-ELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHH-hcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 211 123444444443322 468999999999999977653
No 248
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=22.92 E-value=2.6e+02 Score=26.54 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCe---eEEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEEEe
Q 021241 139 TWKAMEALYDSGKA---RAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 139 ~~~~L~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~via~ 206 (315)
-++.+.+|++.-.+ -.-|-+.++...+..+++... .+++|....-.- .-..+...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a--~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGC--IDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCC--CCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 35666666665331 123566667777777766532 366666654331 2256777777888776554
No 249
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=22.91 E-value=6e+02 Score=23.39 Aligned_cols=133 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCchhHHHHHHHHHHccCCEEe----------CCCCcCC-----HHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHID----------CAQIYGN-----EKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPE 90 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~D----------TA~~Yg~-----E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~ 90 (315)
.++++..+..+.+.+.|+..|| +...||+ -+.+.+.++.. ++ .-.+-|+.|+.......+
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~av-r~----~v~~pVsvKiR~g~~~~~ 148 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAM-KD----AVSIPVTVKHRIGIDDQD 148 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHH-HH----HcCCceEEEEEeeeCCCc
Confidence 5667777777888888999888 4567882 45555566553 11 113557777521111111
Q ss_pred cH--HHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeecc-CCHhHHH
Q 021241 91 DV--PEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSN-FSTKKLG 166 (315)
Q Consensus 91 ~i--~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l~ 166 (315)
.. ...+-+.|+..| +|.+.+|.......+..+.... ....--|+.+.++++.- .|--||... .+.+.+.
T Consensus 149 t~~~~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~----~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~ 221 (333)
T PRK11815 149 SYEFLCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENR----EIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAK 221 (333)
T ss_pred CHHHHHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccc----cCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHH
Confidence 11 123334455566 5777889533211110000000 00011256667777763 677777665 4567777
Q ss_pred HHHH
Q 021241 167 DLLE 170 (315)
Q Consensus 167 ~~~~ 170 (315)
++++
T Consensus 222 ~~l~ 225 (333)
T PRK11815 222 EHLQ 225 (333)
T ss_pred HHHh
Confidence 7765
No 250
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=22.86 E-value=2e+02 Score=24.05 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCC
Q 021241 94 EALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFS 161 (315)
Q Consensus 94 ~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (315)
.+++++|..- .-+|++++..... ....+-++.|+.+..+|++|++-+.-++
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rN--------------p~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRN--------------PTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcC--------------chHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 3455555444 3567777754432 3346778999999999999987655444
No 251
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.86 E-value=6.4e+02 Score=23.78 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=56.9
Q ss_pred eecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-------CeeEEeec--cCCHhHHHHHHHHcC-CCCccccc
Q 021241 112 LMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-------KARAIGVS--NFSTKKLGDLLEVAC-VPPAVNQV 181 (315)
Q Consensus 112 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-------~ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~ 181 (315)
.||.+++....... +.. ...++.++++++.+...+- .||++=|. |.+.++++++.+... .+..++-+
T Consensus 221 SLha~d~e~R~~lm--Pin-~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLI 297 (372)
T PRK11194 221 SLHAPNDELRDEIV--PIN-KKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLI 297 (372)
T ss_pred eccCCCHHHHHHhc--CCc-ccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEe
Confidence 38987654322111 110 0145677877766665432 25666666 455677777766553 34577788
Q ss_pred ccCCCcc------h----HHHHHHHHhcCceEEEecCCC
Q 021241 182 ECHPSWQ------Q----QKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 182 ~~~~~~~------~----~~~~~~~~~~gi~via~~pl~ 210 (315)
+||++.. . ..+.+..+++|+.+......|
T Consensus 298 PYN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 336 (372)
T PRK11194 298 PWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRG 336 (372)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 8887642 1 235666778899988876653
No 252
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.55 E-value=1.9e+02 Score=26.88 Aligned_cols=63 Identities=6% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCee-EEeeccCCHhHHHHHHHHcCCCCcccccccCCCc---chHHHHHHHHhcCceEE
Q 021241 140 WKAMEALYDSGKAR-AIGVSNFSTKKLGDLLEVACVPPAVNQVECHPSW---QQQKLREFCKSKGVHLS 204 (315)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi 204 (315)
++.+.+|++.--|. ..|=+.++...+..+++... ++++|+..+..- ...++..+|+.+|+.++
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~--~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGA--CDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCC--CCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 44555555543322 34444566666666665432 355555544321 12456777777777764
No 253
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.52 E-value=5.6e+02 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=27.7
Q ss_pred ecCCCcccCccccccccCCchhHHHHHHHHHHccCCEEeCC
Q 021241 9 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCA 49 (315)
Q Consensus 9 ~l~tg~~vs~lglGt~~~~~~~~~~~l~~Al~~Gi~~~DTA 49 (315)
+|+.|.+.+...| +.++..++++...+.||+.|+..
T Consensus 5 TlRDG~Q~~~~~~-----s~e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 5 GPRDGLQNEKTFI-----PTEDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred CCCCCCcCCCCCc-----CHHHHHHHHHHHHHcCCCEEEeC
Confidence 4566766665544 44788889999999999999997
No 254
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=22.43 E-value=6.1e+02 Score=23.24 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=22.4
Q ss_pred HHHHHHHHHccCCEEeCCCCcC-CHHHHHHHHHhh
Q 021241 32 GNAVAAAIKAGYRHIDCAQIYG-NEKEIGLVLKKF 65 (315)
Q Consensus 32 ~~~l~~Al~~Gi~~~DTA~~Yg-~E~~lG~al~~~ 65 (315)
.++-...+..|.+==+.|..+| |-..+.+.|++.
T Consensus 19 ~~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~~A 53 (318)
T PRK15418 19 ARIAWFYYHDGLTQSEIGERLGLTRLKVSRLLEKG 53 (318)
T ss_pred HHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344445667777777777777 677777777765
No 255
>PF13289 SIR2_2: SIR2-like domain
Probab=22.39 E-value=2.2e+02 Score=21.88 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=52.2
Q ss_pred HcCCCccceEeecCCCCccCCCCCCCCCCCCC--CCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcC-CCCcc
Q 021241 102 DLQIDYLDLYLMHWPVKMKKGSVGFKPENLDK--PDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVAC-VPPAV 178 (315)
Q Consensus 102 rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~~ 178 (315)
......+.++-+|.-....+.+..+..+++.. ......+..+..+.....+-.||.|-.+. .+..++.... .....
T Consensus 37 ~~~~~~~~i~klHG~~~~~~~~~vlt~~~y~~~~~~~~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~ 115 (143)
T PF13289_consen 37 RSSSGRPPIYKLHGSLDWDPESIVLTEDDYEEYYSSNPWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKS 115 (143)
T ss_pred cccCCCcEEEEEecCcccCCCCEEEcHHHHHHHhhhHHHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCC
Confidence 34456677777775431111212222111100 12355778888888889999999996554 5555544321 11110
Q ss_pred cccccCCCcc--hHHHHHHHHhcCceEE
Q 021241 179 NQVECHPSWQ--QQKLREFCKSKGVHLS 204 (315)
Q Consensus 179 ~q~~~~~~~~--~~~~~~~~~~~gi~vi 204 (315)
.+-.|-+... ......+.++.||.+|
T Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 116 RPRHYIVIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred CccEEEEEcCCchHHHHHHHHHcCCEEC
Confidence 1111111111 2456777888888764
No 256
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=22.36 E-value=6.2e+02 Score=23.32 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHHHHccC
Q 021241 26 SDPGVVGNAVAAAIKAGY 43 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi 43 (315)
.+.+++...|..+++.+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~ 68 (327)
T PRK02901 51 YDPAEAAAWLASAIEAAY 68 (327)
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 566788888888888765
No 257
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.24 E-value=7.3e+02 Score=24.14 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=65.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN 130 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.||.++.|-++|.+..+.. +.+-++|.|-+. ...--+++..-+++.-++++ +.++.+|.|.......
T Consensus 100 VfGg~~kL~~~I~ei~~~~--~P~~I~V~tTC~-~~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~~------- 166 (475)
T PRK14478 100 VFGGEKKLFKAIDEIIEKY--APPAVFVYQTCV-VALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNKN------- 166 (475)
T ss_pred eeCCHHHHHHHHHHHHHhc--CCCEEEEeCCCh-HHHhccCHHHHHHHHHHhhC---CCEEEEECCCcccchh-------
Confidence 5788888888988865442 345566666653 23334556666655555554 6788888776432110
Q ss_pred CCCCCHHHHHHHHHH-HH--------HcCCeeEEeeccCCH--hHHHHHHHHcCCCC
Q 021241 131 LDKPDIPSTWKAMEA-LY--------DSGKARAIGVSNFST--KKLGDLLEVACVPP 176 (315)
Q Consensus 131 ~~~~~~~~~~~~L~~-l~--------~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~ 176 (315)
......+++|-+ ++ ..+.|--||-.+... +.+.++++..++++
T Consensus 167 ---~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v 220 (475)
T PRK14478 167 ---LGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRV 220 (475)
T ss_pred ---hhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeE
Confidence 223334444332 33 245688888666443 57888888877543
No 258
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.23 E-value=3.4e+02 Score=27.90 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeeEEeeccCCHhHHH
Q 021241 89 PEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS--GKARAIGVSNFSTKKLG 166 (315)
Q Consensus 89 ~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~ 166 (315)
-+.+++-++.....-....--+|+|+..+.. -...+++|.+..++ +.+.+|.++|.....+.
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~L----------------s~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------------TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhc----------------CHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 3445555554433323345567888765432 24566777777777 89999999998766666
Q ss_pred HHHHHc
Q 021241 167 DLLEVA 172 (315)
Q Consensus 167 ~~~~~~ 172 (315)
.++..+
T Consensus 170 TIrSRC 175 (700)
T PRK12323 170 TVLSRC 175 (700)
T ss_pred HHHHHH
Confidence 665553
No 259
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.19 E-value=1.6e+02 Score=22.54 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeec
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVS 158 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (315)
-+..+++.|+.+.....|.+++..+++.. ....+....++.|...| |+-+-++
T Consensus 50 ~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~-------------R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 50 DRPGLQRLLADVKAGKIDVVLVEKLDRLS-------------RNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecchhh-------------CCHHHHHHHHHHHHHCC-CEEEEec
Confidence 46677888888877889999999988764 34567788888888776 4444443
No 260
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=22.18 E-value=6e+02 Score=23.13 Aligned_cols=212 Identities=15% Similarity=0.101 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHHccCCEEeCCCCcC------CHH----HHHH----------HHHhhhhcCCCCCCceEEEeccCCC--
Q 021241 28 PGVVGNAVAAAIKAGYRHIDCAQIYG------NEK----EIGL----------VLKKFFEDAVVKREDLWITSKLWNA-- 85 (315)
Q Consensus 28 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg------~E~----~lG~----------al~~~~~~~~~~R~~v~i~tK~~~~-- 85 (315)
++-..++-...+++|-+.++|+ .|. +|+ .+-+ +.++. +-.+...|+--+++.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~-----~g~~~~~iagsiGP~ga 115 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDA-----YGEENQNIAGSLGPYGA 115 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-----hcccccccceeccchhh
Confidence 4455666667899999999986 554 122 1111 11222 223334444444331
Q ss_pred ----------CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEE
Q 021241 86 ----------YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAI 155 (315)
Q Consensus 86 ----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~i 155 (315)
..+.+.+.+-...-++.|.-.-+|++.+...... ...+.+.+.++++ +|=-+|
T Consensus 116 ~~a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i--------------~Ea~Aiv~l~~~~---s~p~wI 178 (300)
T COG2040 116 ALADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI--------------TEAEAIVQLVQEF---SKPAWI 178 (300)
T ss_pred hcChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh--------------HHHHHHHHHHHHh---CCceEE
Confidence 1234555566677777887777999988764332 2234445555555 888899
Q ss_pred eeccCCH------hHHHHHHHHcCCC--CcccccccCCCcchHHHHHHH--HhcCceEEEecCCCCCCCCCCCCccCCCh
Q 021241 156 GVSNFST------KKLGDLLEVACVP--PAVNQVECHPSWQQQKLREFC--KSKGVHLSGYSPLGSPGTTWIKSDVLKHP 225 (315)
Q Consensus 156 Gvs~~~~------~~l~~~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~--~~~gi~via~~pl~~gg~~~~~~~~~~~~ 225 (315)
+++-.+. ..+.++......- +...-+++..++.-..+++.. ...|+++++|--- |-..-........+
T Consensus 179 SfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPNS--Ge~~d~~~k~w~~p 256 (300)
T COG2040 179 SFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPNS--GEQYDPAGKTWHGP 256 (300)
T ss_pred EEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCCc--ccccCcCCCcCCCC
Confidence 9886632 2344444443222 333344443333336677777 4558999998763 21111110111100
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhcCCeeecCC--CCHHHHHHhhccCC
Q 021241 226 VVNMVAEKLGKTPAQVCLRWGLQMGNSLLPKS--TNEVRMKENLDVFD 271 (315)
Q Consensus 226 ~l~~la~~~~~s~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 271 (315)
.. .--+..++++.|+-. |..+|-|. +++.|+.+..++++
T Consensus 257 ~~------~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 257 AL------SADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred CC------chhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 00 001235667777654 44555555 77888887766554
No 261
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=22.08 E-value=2.7e+02 Score=25.07 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHccCCEEeCCC---------CcC--CH-------HHHHHHHHhhhhcCCCCCCceEEEeccCCC----C
Q 021241 29 GVVGNAVAAAIKAGYRHIDCAQ---------IYG--NE-------KEIGLVLKKFFEDAVVKREDLWITSKLWNA----Y 86 (315)
Q Consensus 29 ~~~~~~l~~Al~~Gi~~~DTA~---------~Yg--~E-------~~lG~al~~~~~~~~~~R~~v~i~tK~~~~----~ 86 (315)
+...++|+.-.+.||++|=.+. .++ -+ +.+|+.+++ ..+.++..-+.. .
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~---------~~iRls~HP~qf~vLnS 115 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE---------NGIRLSMHPDQFTVLNS 115 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH---------TT-EEEE---TT--TT-
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH---------cCCeEEecCCcceeCCC
Confidence 3456678888899999996554 122 12 334444443 457777664321 1
Q ss_pred CCCCcHHHHHHH------HHHHcCCCcc--ceEeecC
Q 021241 87 HEPEDVPEALDR------TLRDLQIDYL--DLYLMHW 115 (315)
Q Consensus 87 ~~~~~i~~~~e~------SL~rLg~d~i--Dl~~lH~ 115 (315)
.+++-+.+++++ -|+.||.+.- ..+.+|-
T Consensus 116 p~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~ 152 (275)
T PF03851_consen 116 PREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHV 152 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEee
Confidence 234455555543 4778888777 7888884
No 262
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=22.05 E-value=4.2e+02 Score=24.65 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=49.6
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcC------------CHHHHHHH-----------------------HHhhhhcCCC
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYG------------NEKEIGLV-----------------------LKKFFEDAVV 71 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg------------~E~~lG~a-----------------------l~~~~~~~~~ 71 (315)
+.+.+.++...+.+.|+..||.+..|. +.+.+..+ |+-..+.+.+
T Consensus 78 p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i 157 (344)
T PLN02383 78 GGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKV 157 (344)
T ss_pred CcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCe
Confidence 445677888888899999999997763 22222221 3333444534
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcC
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQ 104 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg 104 (315)
++++|+||.+........+.+-..+.-+.|+
T Consensus 158 --~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~ 188 (344)
T PLN02383 158 --KRMVVSTYQAASGAGAAAMEELEQQTREVLE 188 (344)
T ss_pred --eEEEEEeeecccccCHHHHHHHHHHHHHHhc
Confidence 6699999987666666666665556655654
No 263
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=21.87 E-value=3.3e+02 Score=28.55 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeeEEeeccCCHhHHHH
Q 021241 90 EDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS--GKARAIGVSNFSTKKLGD 167 (315)
Q Consensus 90 ~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~ 167 (315)
+.+++-++...........-+|+|+..+.. ..+.+.+|.+..++ ..+++|-++|.....+..
T Consensus 102 DdIReLIe~a~~~P~~gr~KVIIIDEah~L----------------T~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 102 DEMAALLERAVYAPVDARFKVYMIDEVHML----------------TNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred HHHHHHHHHHHhccccCCceEEEEeChhhC----------------CHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 445555544332222234567777765432 24567777777776 589999999987655555
Q ss_pred HHHHcCCCCcccccccCCCcch---HHHHHHHHhcCce
Q 021241 168 LLEVACVPPAVNQVECHPSWQQ---QKLREFCKSKGVH 202 (315)
Q Consensus 168 ~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~ 202 (315)
++..+ .++.|..+..+ .-+...|.+.||.
T Consensus 166 IrSRC------q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 166 VLSRC------LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred hhhhe------EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 54443 44555555443 2234445555543
No 264
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.86 E-value=6.5e+02 Score=23.37 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=58.4
Q ss_pred eEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHH-HHHcCC---eeEEeecc--CCHhHHHHHHHHcC-CCCcccccc
Q 021241 110 LYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEA-LYDSGK---ARAIGVSN--FSTKKLGDLLEVAC-VPPAVNQVE 182 (315)
Q Consensus 110 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~~G~---ir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~~ 182 (315)
++-||.++........... +..+++++.+++.+ +.+.|+ |+++=+.+ .+.++++++.+... ....++-++
T Consensus 211 aisLka~d~e~r~~l~pv~---~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiP 287 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIA---NKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIP 287 (342)
T ss_pred EEecCCCCHHHHHHhcCCc---ccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEe
Confidence 5678988754322211111 11567778777766 445554 56666664 55677777766653 334556677
Q ss_pred cCCCcch----------HHHHHHHHhcCceEEEecCCC
Q 021241 183 CHPSWQQ----------QKLREFCKSKGVHLSGYSPLG 210 (315)
Q Consensus 183 ~~~~~~~----------~~~~~~~~~~gi~via~~pl~ 210 (315)
||++... ..+.+..+++|+.+......+
T Consensus 288 yn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G 325 (342)
T PRK14454 288 VNEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMG 325 (342)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 8875421 245666778888888877663
No 265
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.65 E-value=3.6e+02 Score=24.85 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEeec-------------------cCCHhHHHHHHHHcCCCCcccccccCCCcchHHH
Q 021241 132 DKPDIPSTWKAMEALYDSGKARAIGVS-------------------NFSTKKLGDLLEVACVPPAVNQVECHPSWQQQKL 192 (315)
Q Consensus 132 ~~~~~~~~~~~L~~l~~~G~ir~iGvs-------------------~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~ 192 (315)
...++.+-+..|+.+.+.| +|++|++ +-.-..+.+.+...++.+++-++... ..
T Consensus 103 ga~~~~~dl~~L~~~~~~G-vR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~k------t~ 175 (313)
T COG2355 103 GAEPLGDDLDKLELFHALG-VRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDK------TF 175 (313)
T ss_pred CcccccccHHHHHHHHHhC-ceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCc------cH
Q ss_pred HHHHHhcCceEEE-ecCCCCCCCCCCCCccCCChHHHHHHHHhCC
Q 021241 193 REFCKSKGVHLSG-YSPLGSPGTTWIKSDVLKHPVVNMVAEKLGK 236 (315)
Q Consensus 193 ~~~~~~~gi~via-~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~ 236 (315)
.+.+.-....+++ +|-. -.+...++...+++++++++.-|+
T Consensus 176 ~Dvl~~s~~PviaSHSN~---~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 176 WDVLDLSKAPVVASHSNA---RALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHhccCCceEEecCCc---hhccCCCCCCCHHHHHHHHhcCCE
No 266
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=21.60 E-value=1.1e+02 Score=28.86 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhhhhcCCCCCCceEEEeccC----------CCCCCC----CcHHHHHHHHHHHcCCCccceEeecCCCCc
Q 021241 54 NEKEIGLVLKKFFEDAVVKREDLWITSKLW----------NAYHEP----EDVPEALDRTLRDLQIDYLDLYLMHWPVKM 119 (315)
Q Consensus 54 ~E~~lG~al~~~~~~~~~~R~~v~i~tK~~----------~~~~~~----~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~ 119 (315)
++-.+.+.+++. .+.=+||-||+- +..++. +.|++.+.+.|++-|+....+|++-+.+..
T Consensus 129 ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 129 NDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred hhHHHHHHHHHc------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 577778888875 455678999982 112222 367888999999999999999999876543
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021241 120 KKGSVGFKPENLDKPDIPSTWKAMEA 145 (315)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~L~~ 145 (315)
. .++....++|++
T Consensus 203 ~-------------yDFp~L~~tL~~ 215 (376)
T PF05049_consen 203 K-------------YDFPKLEETLEK 215 (376)
T ss_dssp S-------------TTHHHHHHHHHH
T ss_pred c-------------CChHHHHHHHHH
Confidence 2 567777777654
No 267
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.60 E-value=6.8e+02 Score=23.51 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEeeccCCHhHHHHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK-ARAIGVSNFSTKKLGDLLE 170 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~ 170 (315)
-+..+-+.|.++|+++|++- +|.. -.+-++.++.+.+.|. .+-++.+-.....++.+.+
T Consensus 27 ~k~~ia~~L~~~GV~~IE~G---~p~~-----------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~ 86 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEAG---FPAV-----------------SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASID 86 (378)
T ss_pred HHHHHHHHHHHhCCCEEEEe---CCCc-----------------ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHh
Confidence 45566777999999999985 3321 1223566666666554 5555555555777777766
Q ss_pred HcCCCCccccccc--CCCc-------ch-------HHHHHHHHhcCceEEEecCC
Q 021241 171 VACVPPAVNQVEC--HPSW-------QQ-------QKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 171 ~~~~~~~~~q~~~--~~~~-------~~-------~~~~~~~~~~gi~via~~pl 209 (315)
. +. +.+.+.+ |..+ .. .+.++++++.|..+....+-
T Consensus 87 ~-g~--~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 87 C-GV--DAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred C-Cc--CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4 33 2333322 2211 11 35777899999887665443
No 268
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.57 E-value=6.5e+02 Score=23.27 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcCC---------------------HHHHHHHHHhhhhcCCCCCCceEEEeccCC
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYGN---------------------EKEIGLVLKKFFEDAVVKREDLWITSKLWN 84 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~---------------------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~ 84 (315)
.+.++..++.+++-+.|+.++=|.-.-.+ -.+| +.+.+ ....|+|+|-.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL-~~va~-------~gkPvilstG~-- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLI-RYVAK-------TGKPIIMSTGI-- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHH-HHHHh-------cCCcEEEECCC--
Confidence 45566677888888999998866432211 1111 12222 23455655554
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHH-HHHHHHHHHHcCCeeEEeeccCCHh
Q 021241 85 AYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPS-TWKAMEALYDSGKARAIGVSNFSTK 163 (315)
Q Consensus 85 ~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~G~ir~iGvs~~~~~ 163 (315)
.+.+.+..+++.-.+ -| .-|+.++|....+. .+..+ -+.++..|++.=. .-||+|.|+..
T Consensus 144 --~t~~Ei~~Av~~i~~-~g--~~~i~LlhC~s~YP-------------~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G 204 (327)
T TIGR03586 144 --ATLEEIQEAVEACRE-AG--CKDLVLLKCTSSYP-------------APLEDANLRTIPDLAERFN-VPVGLSDHTLG 204 (327)
T ss_pred --CCHHHHHHHHHHHHH-CC--CCcEEEEecCCCCC-------------CCcccCCHHHHHHHHHHhC-CCEEeeCCCCc
Confidence 245566666665543 23 24799999754431 11111 2455666665433 47999999876
Q ss_pred HHHHH
Q 021241 164 KLGDL 168 (315)
Q Consensus 164 ~l~~~ 168 (315)
....+
T Consensus 205 ~~~~~ 209 (327)
T TIGR03586 205 ILAPV 209 (327)
T ss_pred hHHHH
Confidence 44333
No 269
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.50 E-value=2.2e+02 Score=26.50 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=36.7
Q ss_pred HHHHHHHHHHc--CCe-eEEeeccCCHhHHHHHHHHcCCCCcccccccCCC---cchHHHHHHHHhcCceEEEe
Q 021241 139 TWKAMEALYDS--GKA-RAIGVSNFSTKKLGDLLEVACVPPAVNQVECHPS---WQQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 139 ~~~~L~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~via~ 206 (315)
-++.+.+|++. -.| -..|=|-++...+.++++... .+++|+...-. ..-..+...|+.+|+.++.+
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a--~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHA--VDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeccC
Confidence 35566666665 222 144555566667776666432 36666655432 12246677777777776654
No 270
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.44 E-value=2.9e+02 Score=24.82 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHc
Q 021241 133 KPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVA 172 (315)
Q Consensus 133 ~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 172 (315)
+...+-+-++.-+++++|. .|=+|+|..++++++++..
T Consensus 163 PVN~elLk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 163 PVNVELLKDAIFELKEEGA--TIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred hhhHHHHHHHHHHHHhcCC--EEEEecchHHHHHHHhhhh
Confidence 3666666688899999998 7889999999999998763
No 271
>PLN02775 Probable dihydrodipicolinate reductase
Probab=21.41 E-value=4.3e+02 Score=23.95 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHcCC
Q 021241 95 ALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACV 174 (315)
Q Consensus 95 ~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (315)
.+++.|..+.-+|.|++.+.. .....+.+.++.+.+.|+--=+|.+.|+.+++.++.+...+
T Consensus 67 dl~~~l~~~~~~~~~~VvIDF------------------T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i 128 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVDY------------------TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGV 128 (286)
T ss_pred cHHHHHHHhhccCCCEEEEEC------------------CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCc
Confidence 355556555556788777764 44577889999999999999999999999998877664232
Q ss_pred CCcccccccC
Q 021241 175 PPAVNQVECH 184 (315)
Q Consensus 175 ~~~~~q~~~~ 184 (315)
+.+.--+++
T Consensus 129 -~vv~apNfS 137 (286)
T PLN02775 129 -YAVIAPQMG 137 (286)
T ss_pred -cEEEECccc
Confidence 334433443
No 272
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.36 E-value=4.9e+02 Score=24.94 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEeecc--CCH-------hHHHHHHHHc-CCCCcccccccC---CCcchHHHHHHHHhc
Q 021241 133 KPDIPSTWKAMEALYDSGKARAIGVSN--FST-------KKLGDLLEVA-CVPPAVNQVECH---PSWQQQKLREFCKSK 199 (315)
Q Consensus 133 ~~~~~~~~~~L~~l~~~G~ir~iGvs~--~~~-------~~l~~~~~~~-~~~~~~~q~~~~---~~~~~~~~~~~~~~~ 199 (315)
..+.+++++.++.+++.| ++.|-+.. +.. ..+..+++.. ..+ ....+.++ +..-..++++..++.
T Consensus 174 sr~~e~V~~Ei~~l~~~g-~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~-g~~~i~~~~~~p~~l~~ell~~~~~~ 251 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDG-VKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID-GVERIRFTTGHPRDLDEDIIKAMADI 251 (437)
T ss_pred cCCHHHHHHHHHHHHHCC-CeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC-CccEEEEeccCcccCCHHHHHHHHcC
Confidence 367899999999999988 56666542 211 1344444332 111 11123332 333347888888876
Q ss_pred C
Q 021241 200 G 200 (315)
Q Consensus 200 g 200 (315)
+
T Consensus 252 ~ 252 (437)
T PRK14331 252 P 252 (437)
T ss_pred C
Confidence 4
No 273
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=21.27 E-value=82 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCCEEeC
Q 021241 32 GNAVAAAIKAGYRHIDC 48 (315)
Q Consensus 32 ~~~l~~Al~~Gi~~~DT 48 (315)
...+..+++.|+|+||.
T Consensus 31 ~~~i~~qL~~GvR~~di 47 (135)
T smart00148 31 VEGYIQALDHGCRCVEL 47 (135)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 45788899999999985
No 274
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=21.23 E-value=7e+02 Score=23.50 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCeeEEeeccCCHhHHHHHHHHc
Q 021241 139 TWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVA 172 (315)
Q Consensus 139 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 172 (315)
..+.++.|++.|.+-++|=|+-+.+++.++.+.+
T Consensus 179 ~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~G 212 (380)
T TIGR00221 179 HFELIRHLKDAGIIVSAGHTNATYELAKAAFKAG 212 (380)
T ss_pred hHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcC
Confidence 4578889999999999999999999999988765
No 275
>PRK10551 phage resistance protein; Provisional
Probab=21.23 E-value=7.7e+02 Score=24.27 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=67.4
Q ss_pred CceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee
Q 021241 74 EDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKAR 153 (315)
Q Consensus 74 ~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 153 (315)
..+.|+-.+.........+...+.+.++.++.+..-+.+ .-..... ....+..+.++.|++.|-
T Consensus 348 ~~~~lsINis~~~l~~~~f~~~l~~~l~~~~~~~~~Lvl-EItE~~~-------------~~~~~~~~~l~~Lr~~G~-- 411 (518)
T PRK10551 348 VGAKLGINISPAHLHSDSFKADVQRLLASLPADHFQIVL-EITERDM-------------VQEEEATKLFAWLHSQGI-- 411 (518)
T ss_pred CCcEEEEEeCHHHHCCchHHHHHHHHHHhCCCCcceEEE-EEechHh-------------cCCHHHHHHHHHHHHCCC--
Confidence 345666666555566677888899999999876433332 2111110 122456688999999998
Q ss_pred EEeeccCCHh--HHHHHHHHcCCCCcccccccCCCc--------ch--HHHHHHHHhcCceEEEe
Q 021241 154 AIGVSNFSTK--KLGDLLEVACVPPAVNQVECHPSW--------QQ--QKLREFCKSKGVHLSGY 206 (315)
Q Consensus 154 ~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~~~~~~~~~gi~via~ 206 (315)
.|.+.+|... .+..+.. .+++.+-+.-+... +. ..++..|++.|+.+++=
T Consensus 412 ~ialDDFGtg~ssl~~L~~---l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 412 EIAIDDFGTGHSALIYLER---FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred EEEEECCCCCchhHHHHHh---CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5666665532 2333222 24444443322211 11 45889999999999983
No 276
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=21.22 E-value=6.2e+02 Score=22.91 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHccCCEEeCCCCcCC---HHHHHHHHHhhhhc--CC-CCCC-ceEEEeccCCCCCCCCcHHHHHHHHHHH
Q 021241 30 VVGNAVAAAIKAGYRHIDCAQIYGN---EKEIGLVLKKFFED--AV-VKRE-DLWITSKLWNAYHEPEDVPEALDRTLRD 102 (315)
Q Consensus 30 ~~~~~l~~Al~~Gi~~~DTA~~Yg~---E~~lG~al~~~~~~--~~-~~R~-~v~i~tK~~~~~~~~~~i~~~~e~SL~r 102 (315)
...++++++.+ |.....+...|+. ...+-+++.+++.+ +. ...+ .++++.- ....+...+.-
T Consensus 19 ~~~~~~~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G----------~~~~~~~~~~~ 87 (363)
T PF00155_consen 19 PPPAAIKAAIR-GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSG----------AQAALFLLLRL 87 (363)
T ss_dssp HHHHHHHHHHH-HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESH----------HHHHHHHHHHH
T ss_pred chHHHHHHHHH-HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecc----------cccchhhhhhc
Confidence 34445555554 4444445556762 33333444433220 10 2345 5665543 22333333333
Q ss_pred cCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeec-----cCCHhHHHHHHHHc----
Q 021241 103 LQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVS-----NFSTKKLGDLLEVA---- 172 (315)
Q Consensus 103 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs-----~~~~~~l~~~~~~~---- 172 (315)
+..+.-|-+++..|... ...+.+ +..| .+..+-+. ..+.+.+++.++..
T Consensus 88 ~~~~~~~~vlv~~P~y~------------------~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 146 (363)
T PF00155_consen 88 LKINPGDTVLVPDPCYP------------------SYIEAA---RLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG 146 (363)
T ss_dssp HHSSTTSEEEEEESSST------------------HHHHHH---HHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred ccccccccceecCCccc------------------cccccc---cccCceeeeccccccccccccccccccccccccccc
Confidence 32444577777766542 122222 2333 35555544 56677787777653
Q ss_pred -CCCCcccccccCCCcch------HHHHHHHHhcCceEEEecCC
Q 021241 173 -CVPPAVNQVECHPSWQQ------QKLREFCKSKGVHLSGYSPL 209 (315)
Q Consensus 173 -~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~via~~pl 209 (315)
+.+..++-.+.||.-.. .++++.|+++|+-++.=...
T Consensus 147 ~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 147 PRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp ETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cccceeeecccccccccccccccccchhhhhcccccceeeeece
Confidence 11233333344443221 45677799988888874433
No 277
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.19 E-value=2.8e+02 Score=24.54 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCC----HhHHH
Q 021241 91 DVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFS----TKKLG 166 (315)
Q Consensus 91 ~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~----~~~l~ 166 (315)
--...++.-|+-.| +|||.+=+-|-.... ++.+-+-+.++-+++-|---+.|=.-+. ...++
T Consensus 22 lg~~~~~dlLe~ag-~yID~~K~g~Gt~~l-------------~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~ 87 (244)
T PF02679_consen 22 LGLRYLEDLLESAG-DYIDFLKFGWGTSAL-------------YPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFD 87 (244)
T ss_dssp --HHHHHHHHHHHG-GG-SEEEE-TTGGGG-------------STCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HH
T ss_pred CCHHHHHHHHHHhh-hhccEEEecCceeee-------------cCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHH
Confidence 34568888999999 999999998755432 2333344555555666666666633222 23444
Q ss_pred HHHHHcC-CCCcccccccCCCcch----HHHHHHHHhcCceEEE
Q 021241 167 DLLEVAC-VPPAVNQVECHPSWQQ----QKLREFCKSKGVHLSG 205 (315)
Q Consensus 167 ~~~~~~~-~~~~~~q~~~~~~~~~----~~~~~~~~~~gi~via 205 (315)
++++.+. ..++++.+.-....-. ..++..++++|..+++
T Consensus 88 ~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 88 EYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4444442 3456665554433322 3577778887777665
No 278
>PRK06256 biotin synthase; Validated
Probab=21.05 E-value=6.4e+02 Score=22.98 Aligned_cols=134 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHccC-CEEeCCCCcC-CHH---HHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHH
Q 021241 27 DPGVVGNAVAAAIKAGY-RHIDCAQIYG-NEK---EIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLR 101 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi-~~~DTA~~Yg-~E~---~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~ 101 (315)
+.++..+.++.+.+.|+ +++-.+..++ ... .+-+.++.. ++..-+...+.....+++.+++ |+
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i-------~~~~~i~~~~~~g~l~~e~l~~-----Lk 159 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAI-------KEETDLEICACLGLLTEEQAER-----LK 159 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHH-------HhcCCCcEEecCCcCCHHHHHH-----HH
Q ss_pred HcCCCccceE------eecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE----EeeccCCHhHHHHHHHH
Q 021241 102 DLQIDYLDLY------LMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARA----IGVSNFSTKKLGDLLEV 171 (315)
Q Consensus 102 rLg~d~iDl~------~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~ 171 (315)
+.|++.+-+- .+...... ...++.+++++.+++.|.--. +|+ +.+.+++.+.+..
T Consensus 160 eaG~~~v~~~lEts~~~~~~i~~~--------------~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~ 224 (336)
T PRK06256 160 EAGVDRYNHNLETSRSYFPNVVTT--------------HTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFF 224 (336)
T ss_pred HhCCCEEecCCccCHHHHhhcCCC--------------CCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHH
Q ss_pred cCCCCcccccccCCCcc
Q 021241 172 ACVPPAVNQVECHPSWQ 188 (315)
Q Consensus 172 ~~~~~~~~q~~~~~~~~ 188 (315)
.. ......++++++.+
T Consensus 225 l~-~l~~~~v~i~~l~P 240 (336)
T PRK06256 225 LK-ELDADSIPINFLNP 240 (336)
T ss_pred HH-hCCCCEEeeccccc
No 279
>PLN02428 lipoic acid synthase
Probab=21.02 E-value=6.9e+02 Score=23.37 Aligned_cols=168 Identities=11% Similarity=0.119 Sum_probs=85.2
Q ss_pred CCchhHHHHHHHHHHccCCEEeCC-------CCcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHH
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCA-------QIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDR 98 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA-------~~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~ 98 (315)
.++++..++.+.+.+.|++++=.. +..|. ..+.+.++..-+.. ..+.|.. ...++..+ ++
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga-~~~~elir~Ir~~~----P~i~Ie~--L~pdf~~d------~e 196 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGS-GHFAETVRRLKQLK----PEILVEA--LVPDFRGD------LG 196 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccH-HHHHHHHHHHHHhC----CCcEEEE--eCccccCC------HH
Confidence 445566677778888898755221 22332 23344444431001 1233222 11222111 44
Q ss_pred HHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCee----EEeeccCCHhHHHHHHHHc
Q 021241 99 TLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS--GKAR----AIGVSNFSTKKLGDLLEVA 172 (315)
Q Consensus 99 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir----~iGvs~~~~~~l~~~~~~~ 172 (315)
.|++|.-.-+|. +-|++.....-...... .....++.++.|+.+++. |..- -+|+ +-+.+++.+.+...
T Consensus 197 lL~~L~eAG~d~-i~hnlETv~rL~~~Ir~---~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 197 AVETVATSGLDV-FAHNIETVERLQRIVRD---PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHHcCCCE-EccCccCcHHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 444444444666 34766532100000000 014678899999999998 7653 3556 44555555555443
Q ss_pred -CCCCccccc-c----------cCCCcch---HHHHHHHHhcCceEEEecCCCC
Q 021241 173 -CVPPAVNQV-E----------CHPSWQQ---QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 173 -~~~~~~~q~-~----------~~~~~~~---~~~~~~~~~~gi~via~~pl~~ 211 (315)
...++++.+ + ++.+... ..+-+++.+.|...++.+||-.
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 233333332 2 2222222 4577788999999999999965
No 280
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=21.02 E-value=60 Score=19.77 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=13.7
Q ss_pred cCCChHHHHHHHHhCCCHHH
Q 021241 221 VLKHPVVNMVAEKLGKTPAQ 240 (315)
Q Consensus 221 ~~~~~~l~~la~~~~~s~aq 240 (315)
+...|..+.+|+++|+++.+
T Consensus 3 i~asP~ar~la~e~gidl~~ 22 (39)
T PF02817_consen 3 IKASPAARKLAAELGIDLSQ 22 (39)
T ss_dssp CCCSHHHHHHHHHTT--GGG
T ss_pred cccCHHHHHHHHHcCCCccc
Confidence 34567888999999988765
No 281
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=21.00 E-value=3.8e+02 Score=23.62 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=57.1
Q ss_pred cCCchhHHHHHHHHHHccCCEEeCCCCcC------CHHHHHHHHHhhhhcCCCCCCceEEEeccCCCC---CCC------
Q 021241 25 QSDPGVVGNAVAAAIKAGYRHIDCAQIYG------NEKEIGLVLKKFFEDAVVKREDLWITSKLWNAY---HEP------ 89 (315)
Q Consensus 25 ~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg------~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~---~~~------ 89 (315)
+.+++++.+++.--+.+||+-=-.++.-| .|.-+.+|+.-. +....||+++.=...+++.+ .+|
T Consensus 27 gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL-~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR 105 (246)
T COG4669 27 GLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEIL-NQNGLPRKKFTTLGDIFPKDGLVSSPTEEKAR 105 (246)
T ss_pred CCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHH-HhcCCCCCCCCcHHHhCCcccccCCcHHHHHH
Confidence 36889999999999999999877777665 377777776432 22337888887666666544 122
Q ss_pred --CcHHHHHHHHHHHcC
Q 021241 90 --EDVPEALDRTLRDLQ 104 (315)
Q Consensus 90 --~~i~~~~e~SL~rLg 104 (315)
..+.++++++|+++.
T Consensus 106 ~~~~~eQ~le~tLs~mD 122 (246)
T COG4669 106 LNYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 347788999999884
No 282
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=20.64 E-value=30 Score=23.88 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHccCCEEeCCCCcC-CHHHHHHHHHhh
Q 021241 26 SDPGVVGNAVAAAIKAGYRHIDCAQIYG-NEKEIGLVLKKF 65 (315)
Q Consensus 26 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~E~~lG~al~~~ 65 (315)
.+++.-.++|..++..|.+.-+.|..|| +...|.+|++..
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~ 47 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQY 47 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHH
Confidence 3556677889999999999999999999 899999999986
No 283
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=20.61 E-value=6.6e+02 Score=23.41 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=59.7
Q ss_pred CccceE-eecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCC---eeEEeec--cCCHhHHHHHHHHcCC----
Q 021241 106 DYLDLY-LMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD-SGK---ARAIGVS--NFSTKKLGDLLEVACV---- 174 (315)
Q Consensus 106 d~iDl~-~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~~~~~---- 174 (315)
.++||. -||.++...+........ ..++.++++++.+..+ .|. |+++=+. |.+.+++.++.+....
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~---~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~ 279 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINK---RFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSW 279 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccc---cccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhcccc
Confidence 457875 478775432221111111 1567788887776665 443 5565554 4555677777766542
Q ss_pred --CCcccccccCCCcch------------HHHHHHHHhcCceEEEecCCCC
Q 021241 175 --PPAVNQVECHPSWQQ------------QKLREFCKSKGVHLSGYSPLGS 211 (315)
Q Consensus 175 --~~~~~q~~~~~~~~~------------~~~~~~~~~~gi~via~~pl~~ 211 (315)
...++-++||++... ..+.+..+++|+.+......|.
T Consensus 280 ~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 280 EHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred CCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 245667777765311 2456667788888888777743
No 284
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=20.57 E-value=3.3e+02 Score=21.10 Aligned_cols=64 Identities=13% Similarity=0.028 Sum_probs=44.8
Q ss_pred CCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCC---ccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021241 72 KREDLWITSKLWNAYHEPEDVPEALDRTLRDLQID---YLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYD 148 (315)
Q Consensus 72 ~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d---~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 148 (315)
+|=-+.|+-|++. ......+++.+.++.+.+..+ -.|++++-.+.... .+..++.+.|+.+.+
T Consensus 48 ~R~G~~VsKKvG~-AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~-------------~~~~~l~~~l~~ll~ 113 (122)
T PRK03459 48 PRFGLVVSKAVGN-AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAAT-------------ASSAELERDVRAGLG 113 (122)
T ss_pred CEEEEEEeeeccc-hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECccccc-------------CCHHHHHHHHHHHHH
Confidence 4666788888764 445677888888888887653 46999887765432 567777777777765
Q ss_pred c
Q 021241 149 S 149 (315)
Q Consensus 149 ~ 149 (315)
.
T Consensus 114 k 114 (122)
T PRK03459 114 K 114 (122)
T ss_pred H
Confidence 4
No 285
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.55 E-value=7e+02 Score=24.13 Aligned_cols=67 Identities=19% Similarity=0.384 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEeecc-----CC-----HhHHHHHHHHcCCCCccccccc---CCCcchHHHHHHHHhc
Q 021241 133 KPDIPSTWKAMEALYDSGKARAIGVSN-----FS-----TKKLGDLLEVACVPPAVNQVEC---HPSWQQQKLREFCKSK 199 (315)
Q Consensus 133 ~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~-----~~~l~~~~~~~~~~~~~~q~~~---~~~~~~~~~~~~~~~~ 199 (315)
..+.+++.+.++.+.+.| ++.|-+.. |. ...+.++++.....+.+.-+.+ ++..-..++++..++.
T Consensus 183 sr~~e~Il~ei~~l~~~G-~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~ 261 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARG-AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARL 261 (459)
T ss_pred cCCHHHHHHHHHHHHHCC-CeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcc
Confidence 367899999999999998 45554432 21 2245555554321111111222 3333346788888775
Q ss_pred C
Q 021241 200 G 200 (315)
Q Consensus 200 g 200 (315)
+
T Consensus 262 ~ 262 (459)
T PRK14338 262 P 262 (459)
T ss_pred c
Confidence 4
No 286
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=20.51 E-value=2.4e+02 Score=26.84 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcC-CeeEEeeccCCHhHHHHHHHHcCCC-----CcccccccCCCcchHHHHHHHHhcCceEEE
Q 021241 135 DIPSTWKAMEALYDSG-KARAIGVSNFSTKKLGDLLEVACVP-----PAVNQVECHPSWQQQKLREFCKSKGVHLSG 205 (315)
Q Consensus 135 ~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~-----~~~~q~~~~~~~~~~~~~~~~~~~gi~via 205 (315)
.-..+++.++.|.++| .|.|+.|.+...-.++++.+..+.+ +..+..+.....+=.++-+.|+++|+.+..
T Consensus 100 EH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 100 EHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 3467889999997788 7999999986554444443332211 112222222333337899999999977766
No 287
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=20.47 E-value=1.5e+02 Score=22.13 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=33.8
Q ss_pred ccCCHhHHHHHHHHcCCCCcccccccCCC---cchHHHHHHHHhcCceEEEecC
Q 021241 158 SNFSTKKLGDLLEVACVPPAVNQVECHPS---WQQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 158 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~via~~p 208 (315)
|.++...+.++++... .+++|+...-. ..-..+.++|+++|+.++.++.
T Consensus 3 ~~~~~~~~~~li~~~a--~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGA--VDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTS--CSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCC--CCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 4567778888877543 36777664332 2235789999999999999997
No 288
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=20.45 E-value=97 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHH
Q 021241 226 VVNMVAEKLGKTPAQVC 242 (315)
Q Consensus 226 ~l~~la~~~~~s~aq~a 242 (315)
.+++||+++|+|..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999999864
No 289
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.44 E-value=7.8e+02 Score=23.76 Aligned_cols=120 Identities=10% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHcC-CeeEEeec--cC--CHhHHHHHHHHc---CCCCcccccccCCCcchHHHHHHHHhcCceEE
Q 021241 133 KPDIPSTWKAMEALYDSG-KARAIGVS--NF--STKKLGDLLEVA---CVPPAVNQVECHPSWQQQKLREFCKSKGVHLS 204 (315)
Q Consensus 133 ~~~~~~~~~~L~~l~~~G-~ir~iGvs--~~--~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi 204 (315)
..+.+.+.+.++.+++.. .++.|-+. ++ +...+.++++.. ++.+. .+.. ..-+.++++..++.|+..+
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~---~~~~~e~l~~l~~aG~~~v 301 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNAR---ANVDYETLKVMKENGLRLL 301 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEec---CCCCHHHHHHHHHcCCCEE
Confidence 367899999999999874 56665554 33 334445544332 22111 1111 1224789999999998877
Q ss_pred EecCCCCCCCCCCCCccCCChHHHHHHHHhCCCHHH--HHHHHHHhcC----CeeecCC--CCHHHHHHhhcc
Q 021241 205 GYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGKTPAQ--VCLRWGLQMG----NSLLPKS--TNEVRMKENLDV 269 (315)
Q Consensus 205 a~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~s~aq--~al~~~l~~~----~~~i~g~--~~~~~l~enl~a 269 (315)
..+.=.. ..+.++.+.+ +.+..+ -+++++...+ ...|+|. .+.+.+++.++.
T Consensus 302 ~iGiES~-----------s~~~L~~~~K--~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 302 LVGYESG-----------DQQILKNIKK--GLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEcCCCC-----------CHHHHHHhcC--CCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 6555421 2344555532 344433 3667777777 2457775 778888877654
No 290
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=20.35 E-value=9.3e+02 Score=24.63 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeeccCCHh--
Q 021241 86 YHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTK-- 163 (315)
Q Consensus 86 ~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~-- 163 (315)
......+...+...|+..+..-- -+.+--..... ..........+..|++.|- .|++.+|...
T Consensus 640 ~l~~~~~~~~l~~~l~~~~~~~~-~l~~ei~e~~~------------~~~~~~~~~~l~~l~~~G~--~i~ld~fg~~~~ 704 (799)
T PRK11359 640 HFRSNQLPNQVSDAMQAWGIDGH-QLTVEITESMM------------MEHDTEIFKRIQILRDMGV--GLSVDDFGTGFS 704 (799)
T ss_pred HhCCchHHHHHHHHHHHhCcChH-hEEEEEcCchh------------hcCHHHHHHHHHHHHHCCC--EEEEECCCCchh
Confidence 34455678888888888876422 22222111110 0345778899999999998 7777776643
Q ss_pred HHHHHHHHcCCCCcccccccCCCcc--------h--HHHHHHHHhcCceEEEec
Q 021241 164 KLGDLLEVACVPPAVNQVECHPSWQ--------Q--QKLREFCKSKGVHLSGYS 207 (315)
Q Consensus 164 ~l~~~~~~~~~~~~~~q~~~~~~~~--------~--~~~~~~~~~~gi~via~~ 207 (315)
.+..+ ...+|+++-+.-+.... . ..++..|++.||.+++-+
T Consensus 705 ~~~~l---~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~g 755 (799)
T PRK11359 705 GLSRL---VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEG 755 (799)
T ss_pred hHHHH---hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEEc
Confidence 33333 22456666555443221 1 468899999999999843
No 291
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=20.34 E-value=1.8e+02 Score=21.53 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEeecc
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSN 159 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 159 (315)
....+=.=|.+.|.||.=.+--.. ..+.+++.+.+++|.+.|.|..+.=+.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l-----------------~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRL-----------------KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHH-----------------CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 344455566777777766554432 177899999999999999999988553
No 292
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.32 E-value=6e+02 Score=22.37 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHH-HHHHHHHHcCCeeEEeeccC-----CHhHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTW-KAMEALYDSGKARAIGVSNF-----STKKL 165 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvs~~-----~~~~l 165 (315)
-.+.++.-|+-+| +|||.+=+-|-... ...++++ +..+-+++-|.--+.| .++ ....+
T Consensus 10 ~~~~~~d~Le~~g-~yID~lKfg~Gt~~--------------l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~ 73 (237)
T TIGR03849 10 PPKFVEDYLKVCG-DYITFVKFGWGTSA--------------LIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKF 73 (237)
T ss_pred CHHHHHHHHHHhh-hheeeEEecCceEe--------------eccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhH
Confidence 4567889999999 89999999875433 2233444 4444455667666666 211 11344
Q ss_pred HHHHHHcC-CCCcccccccCCCcch----HHHHHHHHhcCceEEE
Q 021241 166 GDLLEVAC-VPPAVNQVECHPSWQQ----QKLREFCKSKGVHLSG 205 (315)
Q Consensus 166 ~~~~~~~~-~~~~~~q~~~~~~~~~----~~~~~~~~~~gi~via 205 (315)
+++++.+. ..++++.+.-..+.-. ..+++.++++|..+..
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 44444442 3456666554433322 3577778887777664
No 293
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=20.31 E-value=7.7e+02 Score=23.97 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=51.6
Q ss_pred ccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEeeccCCHhHHHHHHHHcC-CCCcccccccC
Q 021241 107 YLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDS-GKARAIGVSNFSTKKLGDLLEVAC-VPPAVNQVECH 184 (315)
Q Consensus 107 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~ 184 (315)
+.|++-|+.... ..+.+...++.+++. +. -+.|.+++++.+++.++.+. ..+.++-+..
T Consensus 127 ~AD~IaL~~~s~----------------dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad~~plI~Sat~- 187 (450)
T PRK04165 127 KLDMVALRNASG----------------DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVADRKPLLYAATK- 187 (450)
T ss_pred cCCEEEEeCCCC----------------CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCCCCceEEecCc-
Confidence 467777776442 234455666666653 44 37888899999999998763 3444433221
Q ss_pred CCcchHHHHHHHHhcCceEEEecC
Q 021241 185 PSWQQQKLREFCKSKGVHLSGYSP 208 (315)
Q Consensus 185 ~~~~~~~~~~~~~~~gi~via~~p 208 (315)
+.-..+.+.|+++|..++...+
T Consensus 188 --dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 188 --ENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred --chHHHHHHHHHHcCCcEEEEch
Confidence 1115678888888888888554
No 294
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=20.31 E-value=9e+02 Score=24.44 Aligned_cols=211 Identities=16% Similarity=0.144 Sum_probs=113.9
Q ss_pred CchhHHHHHHHHHHccCCEEeCCCCcCC-------------HHHHHHHHHhhhhcCCCCCCceEEEeccCCCC-------
Q 021241 27 DPGVVGNAVAAAIKAGYRHIDCAQIYGN-------------EKEIGLVLKKFFEDAVVKREDLWITSKLWNAY------- 86 (315)
Q Consensus 27 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~-------------E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~------- 86 (315)
.++...++=+..+++|-+.+.|...+.+ +++...+++-. ++. .. .+++|+--+++..
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lA-r~a-~~-~~~~VagsiGP~g~~~~~~~ 117 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLA-REA-AG-DDVYVAGTIGPIGGRGPLGD 117 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHH-HHH-hc-CCCeEEEeCCCCCCCCCCCC
Confidence 3445555555678999999998755433 22333333211 001 11 3467777776532
Q ss_pred CCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEeeccCCH---
Q 021241 87 HEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSG-KARAIGVSNFST--- 162 (315)
Q Consensus 87 ~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~--- 162 (315)
.+.+.+++....-.+.|.-.-+|++++-.. .+..|+..+++.+++.+ +=-.+.++-.+.
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~-----------------~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l 180 (612)
T PRK08645 118 ISLEEIRREFREQIDALLEEGVDGLLLETF-----------------YDLEELLLALEAAREKTDLPIIAQVAFHEDGVT 180 (612)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcc-----------------CCHHHHHHHHHHHHHhCCCcEEEEEEECCCCee
Confidence 245667777777788886566999999854 33566667777776665 322444443221
Q ss_pred ---hHHHHHHHHc-CCCCcccccccCC-CcchHHHHHHHHh-cCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHhCC
Q 021241 163 ---KKLGDLLEVA-CVPPAVNQVECHP-SWQQQKLREFCKS-KGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKLGK 236 (315)
Q Consensus 163 ---~~l~~~~~~~-~~~~~~~q~~~~~-~~~~~~~~~~~~~-~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~~~ 236 (315)
..+.++++.. ...++.+-++++. ...-..+++.... .++.+++|--- |... ....... +..
T Consensus 181 ~~G~~~~~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNa---G~~~----~~~~~~~------~~~ 247 (612)
T PRK08645 181 QNGTSLEEALKELVAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNA---GLPE----YVDGRYV------YSA 247 (612)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECC---CCCC----CCCCccc------cCC
Confidence 1223332221 2345666666653 2222344444443 35666666332 2211 0000000 111
Q ss_pred C---HHHHHHHHHHhcCCeeecCC--CCHHHHHHhhccCC
Q 021241 237 T---PAQVCLRWGLQMGNSLLPKS--TNEVRMKENLDVFD 271 (315)
Q Consensus 237 s---~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 271 (315)
+ .++.+..|.-. |..+|=|. ++|+|+++..+.++
T Consensus 248 ~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 248 NPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred CHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 2 46677778664 77776665 88999888777665
No 295
>PRK14847 hypothetical protein; Provisional
Probab=20.28 E-value=6.7e+02 Score=23.29 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEeeccCCHhHHHH
Q 021241 92 VPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGK----ARAIGVSNFSTKKLGD 167 (315)
Q Consensus 92 i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~ 167 (315)
=+..+-+.|.++|+|.|.+= +|.. -.+-.++..++.+.|+ ++-.++|-.....++.
T Consensus 55 eKl~IA~~L~~lGVd~IEvG---~Pa~-----------------s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~ 114 (333)
T PRK14847 55 RKLRLFEQLVAVGLKEIEVA---FPSA-----------------SQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIAR 114 (333)
T ss_pred HHHHHHHHHHHcCCCEEEee---CCCC-----------------CHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHH
Confidence 34567788999998877763 2321 2344777888877764 6677777777777877
Q ss_pred HHHHcC-CCCcc--cccccCCCcc-------h-------HHHHHHHHhcCc---e---EEEecCCC
Q 021241 168 LLEVAC-VPPAV--NQVECHPSWQ-------Q-------QKLREFCKSKGV---H---LSGYSPLG 210 (315)
Q Consensus 168 ~~~~~~-~~~~~--~q~~~~~~~~-------~-------~~~~~~~~~~gi---~---via~~pl~ 210 (315)
.++... .+... .-++.|.++. . .+.+.++++++. + .+.+++-.
T Consensus 115 a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 115 TFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred HHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 777642 11111 1222222221 1 357789999955 2 47788774
No 296
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=20.21 E-value=1.4e+02 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEeeccC
Q 021241 134 PDIPSTWKAMEALYDSGKARAIGVSNF 160 (315)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~ 160 (315)
.+...+-..|+.|++.|+|+.+...+.
T Consensus 26 ~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 26 ISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp --HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 556777788999999999999988765
No 297
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.08 E-value=4e+02 Score=20.23 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=13.8
Q ss_pred cchHHHHHHHHhcCceEEEe
Q 021241 187 WQQQKLREFCKSKGVHLSGY 206 (315)
Q Consensus 187 ~~~~~~~~~~~~~gi~via~ 206 (315)
..+.++.++|+++|+.++.-
T Consensus 89 ~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp S--HHHHHHHHHTT-EEEES
T ss_pred hHHHHHHHHHHHcCCEEEeC
Confidence 44568899999999998853
No 298
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=20.06 E-value=6.5e+02 Score=26.07 Aligned_cols=176 Identities=9% Similarity=0.041 Sum_probs=83.3
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCCCceEEEeccCCCCCCCCcHHHHHHHHHHHcCCCccceEeecCCCCccCCCCCCCCCC
Q 021241 51 IYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN 130 (315)
Q Consensus 51 ~Yg~E~~lG~al~~~~~~~~~~R~~v~i~tK~~~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 130 (315)
.|.-+..|++.+...++.=..++-+++|.+=. .|. .-...++++...+..+-.+|.|....
T Consensus 79 a~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~--nD~-------~T~~~~~~~~~~~p~~~~v~~~~~gp---------- 139 (703)
T PRK15489 79 AWKEYDVIAKMIENMLATLDYRRYVIFVGTYP--NDA-------ETITEVERMRRRYKRLVRVEVPHDGP---------- 139 (703)
T ss_pred CCCcHHHHHHHHHHHHhcCCCCCeEEEEEecC--CCc-------cHHHHHHHHhccCCcEEEEEcCCCCC----------
Confidence 44447788888776443323567777766433 221 22333445554444455555554321
Q ss_pred CCCCCHHHHHHH-HHHHHH---cCCeeEEeeccCCH------hHHHHHHHHcCCCCcccccccCCCcch-------HHHH
Q 021241 131 LDKPDIPSTWKA-MEALYD---SGKARAIGVSNFST------KKLGDLLEVACVPPAVNQVECHPSWQQ-------QKLR 193 (315)
Q Consensus 131 ~~~~~~~~~~~~-L~~l~~---~G~ir~iGvs~~~~------~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~ 193 (315)
..-...++. +....+ ...+++-||.-|++ .++..+ .....+.+++|.++....+. ....
T Consensus 140 ---~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~~~~~~~~~l~~~~~~ 215 (703)
T PRK15489 140 ---TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLSLERKWYEWVAGTYMD 215 (703)
T ss_pred ---CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeeccCCCccccHHHHHHHH
Confidence 112233332 222211 11222335655554 455444 33334568899876544443 2356
Q ss_pred HHHHhcCceEEEecCCCCCCCCCCCCccCCChHHHHHHHHh-----CC-C-HHHHHHHHHHhc
Q 021241 194 EFCKSKGVHLSGYSPLGSPGTTWIKSDVLKHPVVNMVAEKL-----GK-T-PAQVCLRWGLQM 249 (315)
Q Consensus 194 ~~~~~~gi~via~~pl~~gg~~~~~~~~~~~~~l~~la~~~-----~~-s-~aq~al~~~l~~ 249 (315)
+|+.-++.-++...-+++.--+.|-...++...+..+.+.- +. | ...+-+.|=++.
T Consensus 216 Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~ 278 (703)
T PRK15489 216 EFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAE 278 (703)
T ss_pred HHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHH
Confidence 66665553333332221100111123567778888886663 22 2 344566665653
Done!