Your job contains 1 sequence.
>021242
MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS
SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL
VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ
PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE
NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNM
NITMTNEEILKKLKN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021242
(315 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:1005716696 - symbol:AT1G08315 species:3702 "Ar... 747 5.1e-74 1
TAIR|locus:2045334 - symbol:PUB4 "plant U-box 4" species:... 252 2.1e-20 1
UNIPROTKB|Q0IMG9 - symbol:SPL11 "E3 ubiquitin-protein lig... 250 2.5e-20 1
TAIR|locus:2017719 - symbol:AT1G23030 species:3702 "Arabi... 248 3.2e-20 1
TAIR|locus:2082682 - symbol:PUB14 "plant U-box 14" specie... 239 3.2e-19 1
TAIR|locus:2158252 - symbol:AT5G67340 species:3702 "Arabi... 234 1.4e-18 1
TAIR|locus:2013688 - symbol:PUB17 "plant U-box 17" specie... 232 2.4e-18 1
TAIR|locus:2013990 - symbol:AT1G71020 species:3702 "Arabi... 216 9.6e-17 1
TAIR|locus:2162276 - symbol:PUB15 "Plant U-Box 15" specie... 216 1.0e-16 1
TAIR|locus:2075140 - symbol:PUB13 "plant U-box 13" specie... 214 1.7e-16 1
UNIPROTKB|Q5VRH9 - symbol:PUB12 "U-box domain-containing ... 204 3.6e-15 1
UNIPROTKB|Q6EUK7 - symbol:PUB4 "U-box domain-containing p... 201 3.0e-14 1
TAIR|locus:2194564 - symbol:PUB18 "plant U-box 18" specie... 185 6.9e-12 1
TAIR|locus:2130699 - symbol:AT4G16490 "AT4G16490" species... 181 1.1e-11 1
TAIR|locus:2102455 - symbol:AT3G54790 species:3702 "Arabi... 173 2.4e-10 1
TAIR|locus:2195563 - symbol:PUB19 "plant U-box 19" specie... 172 2.7e-10 1
TAIR|locus:2181077 - symbol:SAUR21 "SMALL AUXIN UP RNA 21... 169 5.9e-10 1
TAIR|locus:2079706 - symbol:PUB9 "plant U-box 9" species:... 164 1.2e-09 1
TAIR|locus:2141226 - symbol:PUB8 "plant U-box 8" species:... 161 1.8e-09 1
TAIR|locus:2154124 - symbol:AT5G62560 species:3702 "Arabi... 155 2.0e-08 1
TAIR|locus:2100372 - symbol:PUB39 "PLANT U-BOX 39" specie... 152 3.8e-08 1
TAIR|locus:2096687 - symbol:AT3G01400 species:3702 "Arabi... 148 5.5e-08 1
TAIR|locus:2178818 - symbol:AT5G58680 "AT5G58680" species... 141 3.6e-07 1
TAIR|locus:2173742 - symbol:AT5G40140 species:3702 "Arabi... 141 7.9e-07 1
TAIR|locus:2008813 - symbol:AT1G67530 species:3702 "Arabi... 141 1.3e-06 1
TAIR|locus:2032472 - symbol:AT1G24330 species:3702 "Arabi... 135 6.2e-06 1
TAIR|locus:2171810 - symbol:PUB38 "plant U-box 38" specie... 132 8.6e-06 1
TAIR|locus:2010424 - symbol:PUB45 "plant U-box 45" specie... 129 2.9e-05 1
TAIR|locus:2099634 - symbol:AT3G03440 "AT3G03440" species... 125 3.3e-05 1
TAIR|locus:2146183 - symbol:AT5G18320 species:3702 "Arabi... 118 0.00025 1
>TAIR|locus:1005716696 [details] [associations]
symbol:AT1G08315 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000225
InterPro:IPR016024 Pfam:PF00514 SMART:SM00185 EMBL:CP002684
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
UniGene:At.42266 UniGene:At.48169 EMBL:AK229288 IPI:IPI00546916
RefSeq:NP_849613.1 ProteinModelPortal:Q0WNZ8 SMR:Q0WNZ8
PRIDE:Q0WNZ8 EnsemblPlants:AT1G08315.1 GeneID:837352
KEGG:ath:AT1G08315 TAIR:At1g08315 eggNOG:NOG245502
InParanoid:Q0WNZ8 OMA:VAQVAGC PhylomeDB:Q0WNZ8
ProtClustDB:CLSN2690788 Genevestigator:Q0WNZ8 Uniprot:Q0WNZ8
Length = 325
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 165/306 (53%), Positives = 205/306 (66%)
Query: 1 MEV-KRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYS 59
ME KRRT+ ++V++L SVSEQT SK D + R +I++AG+IPYLAE LYS
Sbjct: 1 METAKRRTMSTIVSRLSSVSEQTRAAALAELRLISKQDPDSRLIIADAGAIPYLAETLYS 60
Query: 60 SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSL 119
SSH+ QENAAATLLNLSITSR+ LMS+RGLLDA+SH LRHH ++SL
Sbjct: 61 SSHSSQENAAATLLNLSITSREPLMSSRGLLDALSHALRHHDTTTSPAAVQSSAATIYSL 120
Query: 120 LVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L+ + SYRPIIG+KRDII SLI II+ +S RS+KD+LKALF IALYP+NR +I+LG
Sbjct: 121 LIAEESYRPIIGSKRDIIFSLIHIIRYPDSHPRSIKDSLKALFAIALYPMNRSTMISLGA 180
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRV 238
+ LFSL+V R GIVEDA+AV+AQ+AGCE+S D ++ G TGS R+
Sbjct: 181 IPALFSLIVKDSRCGIVEDATAVMAQVAGCEDSEDGMRRVSGANVLADLLDPCTGSSLRI 240
Query: 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVAD-----GIADVAQNGSAKGKTKAVALLKI 293
KEN+V ALLNL GG A EV AD GI VA+NGS KG+ KAV LLK+
Sbjct: 241 KENSVGALLNLARCGGAAARSEVAAAVASGADEGAMEGIVYVAENGSLKGRKKAVDLLKL 300
Query: 294 LVDDGN 299
+V GN
Sbjct: 301 VVS-GN 305
>TAIR|locus:2045334 [details] [associations]
symbol:PUB4 "plant U-box 4" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 EMBL:CP002685 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 IPI:IPI00532127
RefSeq:NP_179895.6 UniGene:At.39339 ProteinModelPortal:F4ILG6
SMR:F4ILG6 PRIDE:F4ILG6 EnsemblPlants:AT2G23140.1 GeneID:816846
KEGG:ath:AT2G23140 OMA:WRRPSER Uniprot:F4ILG6
Length = 829
Score = 252 (93.8 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 86/291 (29%), Positives = 140/291 (48%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSS 61
EV+ + V+ LV +L S S T +KH+ + R +I +G+I L E+LYS+
Sbjct: 541 EVETQ-VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTD 599
Query: 62 HAFQENAAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLL 120
A QENA LLNLSI + ++ G ++ + HVL + L SL
Sbjct: 600 SATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLEN----GSSEAKENSAATLFSLS 655
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V++ + IG + I L++++ N R KDA ALF ++++ N+ ++ G V+
Sbjct: 656 VIEENKIKIG-QSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIHQENKAMIVQSGAVR 712
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKE 240
L L+ AG+V+ A AV+A +A E + + GI + G KE
Sbjct: 713 YLIDLM--DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARG---KE 767
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291
NA +ALL L G ++E A+ + ++Q+G+ + + KA ALL
Sbjct: 768 NAAAALLQLSTNSGRFCNMVLQEGAVPP---LVALSQSGTPRAREKAQALL 815
>UNIPROTKB|Q0IMG9 [details] [associations]
symbol:SPL11 "E3 ubiquitin-protein ligase SPL11"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA] [GO:0031348 "negative regulation of
defense response" evidence=IMP] [GO:0043069 "negative regulation of
programmed cell death" evidence=IMP] [GO:0048586 "regulation of
long-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
GO:GO:0006952 SUPFAM:SSF48371 GO:GO:0031348 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0043069 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0009908 GO:GO:0004842 GO:GO:0000151
EMBL:DP000011 EMBL:AP008218 GO:GO:0048586 eggNOG:NOG242845
EMBL:AY652589 EMBL:AY652590 EMBL:AK105835 RefSeq:NP_001067077.2
UniGene:Os.21174 ProteinModelPortal:Q0IMG9 SMR:Q0IMG9
GeneID:4352575 KEGG:dosa:Os03t0275900-01 KEGG:dosa:Os12t0570000-01
KEGG:osa:4352575 Gramene:Q0IMG9 Uniprot:Q0IMG9
Length = 694
Score = 250 (93.1 bits), Expect = 2.5e-20, P = 2.5e-20
Identities = 86/292 (29%), Positives = 141/292 (48%)
Query: 4 KRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHA 63
+R + +L++KL S + +K +A R I+EAG+IP L +L SS
Sbjct: 365 ERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLR 424
Query: 64 FQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLV 121
QE+A LLNLSI ++ S++S+ G + +I HVL++ L SL V
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISS-GAVPSIVHVLKN----GSMEARENAAATLFSLSV 479
Query: 122 VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQP 181
+D Y+ IG I +L+ ++ + R KDA ALF + +Y N+ + I G V
Sbjct: 480 IDEYKVTIGGM-GAIPALVVLLGEGSQ--RGKKDAAAALFNLCIYQGNKGRAIRAGLVPL 536
Query: 182 LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGH-RVKE 240
+ LV N A ++++A A+++ ++ S E K G GSG R +E
Sbjct: 537 IMGLVTNPTGA-LMDEAMAILSILS----SHPEGKAAIGAAEPVPVLVEMIGSGTPRNRE 591
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
NA + +L+L + G + + + ++A NG+ +GK KAV LL+
Sbjct: 592 NAAAVMLHLCS-GEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
>TAIR|locus:2017719 [details] [associations]
symbol:AT1G23030 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0010200 "response to
chitin" evidence=IEP] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AF000657
HOGENOM:HOG000238412 HSSP:Q8VZ40 ProtClustDB:CLSN2681864
EMBL:BT002518 EMBL:AK221923 IPI:IPI00532693 PIR:D86364
RefSeq:NP_173716.1 UniGene:At.41572 UniGene:At.74178
ProteinModelPortal:Q8GUG9 SMR:Q8GUG9 PaxDb:Q8GUG9 PRIDE:Q8GUG9
EnsemblPlants:AT1G23030.1 GeneID:838911 KEGG:ath:AT1G23030
TAIR:At1g23030 eggNOG:KOG0167 InParanoid:Q8GUG9 OMA:IDCGNLT
PhylomeDB:Q8GUG9 Genevestigator:Q8GUG9 Uniprot:Q8GUG9
Length = 612
Score = 248 (92.4 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 80/288 (27%), Positives = 137/288 (47%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+R+LV +L S S + SK + R +I+EAG+IP L +L S A QEN
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392
Query: 68 AAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYR 126
A +LNLSI + L+ G + +I VLR L SL + D +
Sbjct: 393 AITCVLNLSIYENNKELIMFAGAVTSIVQVLR----AGTMEARENAAATLFSLSLADENK 448
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IIG I +L+++++ N R KDA ALF + +Y N+ + + G V L ++
Sbjct: 449 IIIGGS-GAIPALVDLLE--NGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKML 505
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSAL 246
+ R +V++A +++ +A +++ K + R +ENA + L
Sbjct: 506 SDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQT---RNRENAAAIL 562
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L+L E+ + + V + D+++NG+ +GK KA++LL++L
Sbjct: 563 LSLCKRDTEKLIT-IGRLGAVVP--LMDLSKNGTERGKRKAISLLELL 607
>TAIR|locus:2082682 [details] [associations]
symbol:PUB14 "plant U-box 14" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;ISS] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 EMBL:AL049655
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HOGENOM:HOG000238412
eggNOG:NOG242845 OMA:KTGSPRN EMBL:AY065279 EMBL:AY096530
IPI:IPI00539579 PIR:T06735 RefSeq:NP_191045.2 UniGene:At.28098
PDB:1T1H PDBsum:1T1H ProteinModelPortal:Q8VZ40 SMR:Q8VZ40
IntAct:Q8VZ40 STRING:Q8VZ40 PaxDb:Q8VZ40 PRIDE:Q8VZ40
EnsemblPlants:AT3G54850.1 GeneID:824650 KEGG:ath:AT3G54850
TAIR:At3g54850 InParanoid:Q8VZ40 PhylomeDB:Q8VZ40
ProtClustDB:CLSN2690608 EvolutionaryTrace:Q8VZ40
Genevestigator:Q8VZ40 GermOnline:AT3G54850 Uniprot:Q8VZ40
Length = 632
Score = 239 (89.2 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 82/301 (27%), Positives = 144/301 (47%)
Query: 5 RRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAF 64
R V SL+ KL + + + +K + + R I+EAG+IP L E+L S
Sbjct: 344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRT 403
Query: 65 QENAAATLLNLSIT--SRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVV 122
QE++ LLNLSI ++ +++ + D + VL++ L SL V+
Sbjct: 404 QEHSVTALLNLSINEGNKGAIVDAGAITDIVE-VLKN----GSMEARENAAATLFSLSVI 458
Query: 123 DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPL 182
D + IGA I +LI +++ R KDA A+F + +Y N+ + + G V PL
Sbjct: 459 DENKVAIGAA-GAIQALISLLE--EGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPL 515
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENA 242
L+ + G G+V++A A++A ++ +E + I TGS R +ENA
Sbjct: 516 TRLLKDAG-GGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIR--TGSP-RNRENA 571
Query: 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNI 302
+A+L + G +E+ VA + ++ +NG+ + K KA +LL+++ + +
Sbjct: 572 -AAILWYLCIGNIERLNVAREVGADVA--LKELTENGTDRAKRKAASLLELIQQTEGVAV 628
Query: 303 T 303
T
Sbjct: 629 T 629
>TAIR|locus:2158252 [details] [associations]
symbol:AT5G67340 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0000165
"MAPK cascade" evidence=RCA] [GO:0006499 "N-terminal protein
myristoylation" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0006865 "amino acid transport"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0006984 "ER-nucleus signaling pathway" evidence=RCA]
[GO:0007154 "cell communication" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009414 "response to water
deprivation" evidence=RCA] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009627 "systemic acquired resistance"
evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=RCA] [GO:0031348 "negative regulation of
defense response" evidence=RCA] [GO:0034976 "response to
endoplasmic reticulum stress" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB007645 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:BT015818 EMBL:BT020206 EMBL:AK229487
IPI:IPI00537014 RefSeq:NP_201535.3 UniGene:At.28815
ProteinModelPortal:Q5XEZ8 SMR:Q5XEZ8 STRING:Q5XEZ8 PaxDb:Q5XEZ8
PRIDE:Q5XEZ8 EnsemblPlants:AT5G67340.1 GeneID:836869
KEGG:ath:AT5G67340 TAIR:At5g67340 eggNOG:NOG269447
InParanoid:Q5XEZ8 OMA:LASWCET PhylomeDB:Q5XEZ8
ProtClustDB:CLSN2681130 Genevestigator:Q5XEZ8 Uniprot:Q5XEZ8
Length = 707
Score = 234 (87.4 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 81/286 (28%), Positives = 132/286 (46%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V+ L+ L S S T +++ + R +I+ +IP L +LYS+ Q +
Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQAD 482
Query: 68 AAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYR 126
A LLNLSI + SL++ G + + HVL+ L SL V++ Y+
Sbjct: 483 AVTCLLNLSINDNNKSLIAESGAIVPLIHVLK---TGYLEEAKANSAATLFSLSVIEEYK 539
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IG + I L++++ + + L KDA ALF ++++ N+ +VI G V+ L L+
Sbjct: 540 TEIG-EAGAIEPLVDLLGSGS--LSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSAL 246
G+VE A V+A +A E + GI + G KENA +AL
Sbjct: 597 --DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARG---KENATAAL 651
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
L L + ++E V + + ++G+A+GK KA LLK
Sbjct: 652 LQLCTHSPKFCNNVIRE---GVIPPLVALTKSGTARGKEKAQNLLK 694
>TAIR|locus:2013688 [details] [associations]
symbol:PUB17 "plant U-box 17" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0009626
"plant-type hypersensitive response" evidence=IGI] [GO:0009814
"defense response, incompatible interaction" evidence=IMP]
[GO:0009817 "defense response to fungus, incompatible interaction"
evidence=IGI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009817 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 UniGene:At.17411 EMBL:AC068667
GO:GO:0000151 eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
HSSP:Q8VZ40 EMBL:AY064045 EMBL:AY150512 IPI:IPI00523315 PIR:A86416
RefSeq:NP_174228.1 UniGene:At.27415 ProteinModelPortal:Q9C7R6
SMR:Q9C7R6 IntAct:Q9C7R6 STRING:Q9C7R6 PRIDE:Q9C7R6
EnsemblPlants:AT1G29340.1 GeneID:839808 KEGG:ath:AT1G29340
TAIR:At1g29340 InParanoid:Q9C7R6 PhylomeDB:Q9C7R6
ProtClustDB:CLSN2679704 Genevestigator:Q9C7R6 Uniprot:Q9C7R6
Length = 729
Score = 232 (86.7 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 84/296 (28%), Positives = 130/296 (43%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSS 60
+E + TV L+ L S+ +K E R I+EAG+IP+L +L S
Sbjct: 401 VEANKATVSILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSE 460
Query: 61 SHAFQENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHS 118
+ QEN+ +LNLSI ++ +M L++I VL L S
Sbjct: 461 NAIAQENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVL---VSGLTVEAQENAAATLFS 517
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L V Y+ I + +L +++ N R KDA+ AL+ ++ +P N ++I GG
Sbjct: 518 LSAVHEYKKRIAIVDQCVEALALLLQ--NGTPRGKKDAVTALYNLSTHPDNCSRMIEGGG 575
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIA-QIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHR 237
V L + N G A A A++ Q G E E G+ G+ R
Sbjct: 576 VSSLVGALKNEGVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMR-----CGTP-R 629
Query: 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293
KENAV+ALL L GG AE+V A +A + + G+ + + KA +L ++
Sbjct: 630 GKENAVAALLELCRSGGAAVAEKVLR-APAIAGLLQTLLFTGTKRARRKAASLARV 684
>TAIR|locus:2013990 [details] [associations]
symbol:AT1G71020 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC016972
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AC008148 HOGENOM:HOG000238412 EMBL:AY075626 EMBL:AY142062
EMBL:AK220971 IPI:IPI00534706 PIR:E96734 RefSeq:NP_177258.3
UniGene:At.43068 HSSP:Q8VZ40 ProteinModelPortal:Q9C9A6 SMR:Q9C9A6
IntAct:Q9C9A6 PaxDb:Q9C9A6 PRIDE:Q9C9A6 EnsemblPlants:AT1G71020.1
GeneID:843442 KEGG:ath:AT1G71020 TAIR:At1g71020 eggNOG:NOG261082
InParanoid:Q9C9A6 OMA:FQARESS PhylomeDB:Q9C9A6
ProtClustDB:CLSN2681864 Genevestigator:Q9C9A6 Uniprot:Q9C9A6
Length = 628
Score = 216 (81.1 bits), Expect = 9.6e-17, P = 9.6e-17
Identities = 76/289 (26%), Positives = 136/289 (47%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHA-FQE 66
+R+LV KL S S + SK + R +I+EAG+IP L ++L S QE
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQE 402
Query: 67 NAAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSY 125
NA +LNLSI + L+ G + +I VLR L SL + D
Sbjct: 403 NAVTCILNLSIYEHNKELIMLAGAVTSIVLVLR----AGSMEARENAAATLFSLSLADEN 458
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+ IIGA I+ +L+++++ + +R KDA ALF + +Y N+ + + G V+PL +
Sbjct: 459 KIIIGASGAIM-ALVDLLQYGS--VRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKM 515
Query: 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSA 245
+ + + ++A +++ +A + + + I R +ENA +
Sbjct: 516 LTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQP---RNRENAAAI 572
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
LL L E+ + + V + +++++G+ + K KA +LL++L
Sbjct: 573 LLCLCKRDTEKLIS-IGRLGAVVP--LMELSRDGTERAKRKANSLLELL 618
>TAIR|locus:2162276 [details] [associations]
symbol:PUB15 "Plant U-Box 15" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=RCA] [GO:0030048 "actin filament-based movement"
evidence=RCA] [GO:0048610 "cellular process involved in
reproduction" evidence=RCA] [GO:0048868 "pollen tube development"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AB016888 GO:GO:0000151 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK175585 IPI:IPI00547462 RefSeq:NP_199049.2
UniGene:At.51075 ProteinModelPortal:Q681N2 SMR:Q681N2 PaxDb:Q681N2
PRIDE:Q681N2 EnsemblPlants:AT5G42340.1 GeneID:834240
KEGG:ath:AT5G42340 TAIR:At5g42340 eggNOG:NOG263115
InParanoid:Q681N2 OMA:CCHDGSK PhylomeDB:Q681N2
ProtClustDB:CLSN2681658 Genevestigator:Q681N2 Uniprot:Q681N2
Length = 660
Score = 216 (81.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 76/288 (26%), Positives = 130/288 (45%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V LV L S + ++ + E R +I+ AG+IP L ++L QEN
Sbjct: 381 VSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQEN 440
Query: 68 AAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYR 126
A TLLNLSI L+S G + I +L + L SL ++D +
Sbjct: 441 AVTTLLNLSIDEVNKKLISNEGAIPNIIEILEN----GNREARENSAAALFSLSMLDENK 496
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IG I L+++++ + LR KDAL ALF ++L N+ + I G VQPL +L+
Sbjct: 497 VTIGLSNGI-PPLVDLLQ--HGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLL 553
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSAL 246
+ G++++A +++ +A E + I T KE A S L
Sbjct: 554 KDKN-LGMIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKN---KECATSVL 609
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L L G ++ + + V + + ++ +G+ + + KA AL++++
Sbjct: 610 LEL---GSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQLI 654
>TAIR|locus:2075140 [details] [associations]
symbol:PUB13 "plant U-box 13" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0016567
"protein ubiquitination" evidence=IEA;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0042742 "defense response to bacterium"
evidence=IGI] [GO:0000902 "cell morphogenesis" evidence=RCA]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
[GO:0016049 "cell growth" evidence=RCA] [GO:0032880 "regulation of
protein localization" evidence=RCA] [GO:0046777 "protein
autophosphorylation" evidence=RCA] [GO:0048193 "Golgi vesicle
transport" evidence=RCA] [GO:0048767 "root hair elongation"
evidence=RCA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0042742 EMBL:AL133314
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY042791 EMBL:AY128813
IPI:IPI00531350 PIR:T45588 RefSeq:NP_190235.1 UniGene:At.23070
ProteinModelPortal:Q9SNC6 SMR:Q9SNC6 STRING:Q9SNC6 PaxDb:Q9SNC6
PRIDE:Q9SNC6 EnsemblPlants:AT3G46510.1 GeneID:823804
KEGG:ath:AT3G46510 TAIR:At3g46510 eggNOG:NOG269633
InParanoid:Q9SNC6 OMA:DSRIQEH PhylomeDB:Q9SNC6
ProtClustDB:CLSN2684834 Genevestigator:Q9SNC6 Uniprot:Q9SNC6
Length = 660
Score = 214 (80.4 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 76/262 (29%), Positives = 127/262 (48%)
Query: 34 SKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI--TSRDSLMSTRGLLD 91
+K +A+ R I+EAG+IP L +L + QE++ LLNLSI ++ +++S G +
Sbjct: 380 AKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSA-GAIP 438
Query: 92 AISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151
I VL+ L SL V+D + IGA I L+ ++ R
Sbjct: 439 GIVQVLKK----GSMEARENAAATLFSLSVIDENKVTIGAL-GAIPPLVVLLNEGTQ--R 491
Query: 152 SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211
KDA ALF + +Y N+ + I G + L L+ G +G+V++A A++A ++ S
Sbjct: 492 GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPG-SGMVDEALAILAILS----S 546
Query: 212 VDEFKKCCGIXXXXXXXXXXTGSGH-RVKENAVSALLNLVNFGGERAAEEVKEMAMQVAD 270
E K G +G R +ENA + L++L + G + E +++ +
Sbjct: 547 HPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCS-GDPQHLVEAQKLGLM--G 603
Query: 271 GIADVAQNGSAKGKTKAVALLK 292
+ D+A NG+ +GK KA LL+
Sbjct: 604 PLIDLAGNGTDRGKRKAAQLLE 625
>UNIPROTKB|Q5VRH9 [details] [associations]
symbol:PUB12 "U-box domain-containing protein 12"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AP008212
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 EMBL:AP002842 EMBL:AK067611 EMBL:AK071080
RefSeq:NP_001056535.2 UniGene:Os.11259 ProteinModelPortal:Q5VRH9
EnsemblPlants:LOC_Os06g01304.1 GeneID:4339839 KEGG:osa:4339839
Gramene:Q5VRH9 eggNOG:NOG242845 OMA:KTGSPRN ProtClustDB:CLSN2695872
Uniprot:Q5VRH9
Length = 611
Score = 204 (76.9 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 79/287 (27%), Positives = 135/287 (47%)
Query: 10 SLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAA 69
SL+ +L S ++ +K + R I+EAG+IP L +L SS QE+A
Sbjct: 327 SLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAV 386
Query: 70 ATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRP 127
LLNLSI ++ S++ + + I VL+ L SL VVD +
Sbjct: 387 TALLNLSIHENNKASIVDSHAI-PKIVEVLK----TGSMETRENAAATLFSLSVVDENKV 441
Query: 128 IIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV 187
IGA I LI ++ SP R KDA A+F + +Y N+ + + G V L + +V
Sbjct: 442 TIGAA-GAIPPLINLL-CDGSP-RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLV 498
Query: 188 NGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALL 247
+ G++++A ++++ +AG E + I TGS R +ENA + L
Sbjct: 499 DP-TGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIK--TGSP-RNRENAAAILW 554
Query: 248 NLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L + E+ + A V D + ++++ G+ + K KA ++L+++
Sbjct: 555 LLCSADTEQT---LAAKAAGVEDALKELSETGTDRAKRKASSILELM 598
>UNIPROTKB|Q6EUK7 [details] [associations]
symbol:PUB4 "U-box domain-containing protein 4"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:AP008208
EMBL:CM000139 GO:GO:0000151 EMBL:AP004030 EMBL:AK062592
RefSeq:NP_001046379.1 UniGene:Os.5133 ProteinModelPortal:Q6EUK7
EnsemblPlants:LOC_Os02g13960.1 GeneID:4328818
KEGG:dosa:Os02t0234300-01 KEGG:osa:4328818 Gramene:Q6EUK7
eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
ProtClustDB:CLSN2692596 Uniprot:Q6EUK7
Length = 728
Score = 201 (75.8 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 76/295 (25%), Positives = 126/295 (42%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSS 60
ME + T R LV L SE +K + R I++ G+IP L +L S+
Sbjct: 394 MEANKATARILVRMLEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSN 453
Query: 61 SHAFQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHS 118
QENA LLNLSI ++ +M G L I VL++ L S
Sbjct: 454 DWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQN---GWTTEAKENAAATLFS 510
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L VV +++ +I + + L ++ S R KDA+ ALF ++ +P + +++
Sbjct: 511 LSVVHNFKKLIMNEPGAVEELASMLTKGTS--RGKKDAVMALFNLSTHPESSARMLESCA 568
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRV 238
V L + N + E+A+ +A + + S+ G+ +
Sbjct: 569 VVALIQSLRNDT---VSEEAAGALALLMK-QPSIVHLVGSSETVITSLVGLMRRGTP-KG 623
Query: 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293
KENAVSAL + GG + V ++ + I + NG+ + K KA ++K+
Sbjct: 624 KENAVSALYEICRRGGSALVQRVAKIP-GLNTVIQTITLNGTKRAKKKASLIVKM 677
>TAIR|locus:2194564 [details] [associations]
symbol:PUB18 "plant U-box 18" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010029 "regulation of seed
germination" evidence=IGI] InterPro:IPR001841 InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00184 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842
EMBL:AC007067 GO:GO:0000151 HOGENOM:HOG000238412 HSSP:Q8VZ40
EMBL:AY075683 IPI:IPI00537444 PIR:B86239 RefSeq:NP_172526.1
UniGene:At.14982 ProteinModelPortal:Q9XIJ5 SMR:Q9XIJ5 PRIDE:Q9XIJ5
EnsemblPlants:AT1G10560.1 GeneID:837597 KEGG:ath:AT1G10560
TAIR:At1g10560 eggNOG:NOG251934 InParanoid:Q9XIJ5 OMA:EPSSKHR
PhylomeDB:Q9XIJ5 ProtClustDB:CLSN2679599 Genevestigator:Q9XIJ5
Uniprot:Q9XIJ5
Length = 697
Score = 185 (70.2 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 67/257 (26%), Positives = 114/257 (44%)
Query: 41 RPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLS--ITSRDSLMSTRGLLDAISHVLR 98
R + +AG++ L ++L S QENA A +LNLS +T + S ++ GL + +L
Sbjct: 423 RSCLVKAGAVTPLLKLLSSVDIRIQENAMAGILNLSKHVTGK-SKIAGEGL-KILVEILN 480
Query: 99 HHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158
L S V+ Y +IG D I L+ I+K + + + AL
Sbjct: 481 EGAKTETRLYSASALFYLSS---VEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALL 537
Query: 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIAQIAGCEESVDEFKK 217
A+ G+ + N ++V+A G V L L+ +G G+ D A +A++A + +
Sbjct: 538 AVMGLLMQSDNHWRVLAAGAVPILLDLLRSGEISGGLTADCLATLAKLAEYPDGTIGVIR 597
Query: 218 CCGIXXXXXXXXXXTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ 277
G+ S VK++ V +LNL GG + + ++ V + V
Sbjct: 598 RGGLKLAVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSL-VMGSLYTVLS 656
Query: 278 NGSAKGKTKAVALLKIL 294
NG G KA AL++++
Sbjct: 657 NGEYGGSKKASALIRMI 673
>TAIR|locus:2130699 [details] [associations]
symbol:AT4G16490 "AT4G16490" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0006816
"calcium ion transport" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0009651 "response to salt stress"
evidence=RCA] InterPro:IPR000225 InterPro:IPR016024 Pfam:PF00514
PROSITE:PS50176 SMART:SM00185 EMBL:CP002687 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 IPI:IPI00531461
RefSeq:NP_567501.4 UniGene:At.23147 UniGene:At.75353
ProteinModelPortal:F4JMH0 SMR:F4JMH0 EnsemblPlants:AT4G16490.1
GeneID:827347 KEGG:ath:AT4G16490 OMA:DLQPTVK Uniprot:F4JMH0
Length = 472
Score = 181 (68.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 73/289 (25%), Positives = 126/289 (43%)
Query: 7 TVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
TV+ + L S S +K+ A+ R +I E+G+I L +L + QE
Sbjct: 184 TVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDPWTQE 243
Query: 67 NAAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSY 125
+A LLNLS+ ++ ++++ G + ++ VL+ L SL +++
Sbjct: 244 HAVTALLNLSLHDQNKAVIAAGGAIKSLVWVLK----TGTETSKQNAACALLSLALLEEN 299
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+ IGA I L+ ++ N R KDAL L+ + N+ + + G V+PL L
Sbjct: 300 KGSIGAC-GAIPPLVSLLL--NGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDL 356
Query: 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSA 245
V G G+ E A V++ +A ++ + + GI + G KE A+
Sbjct: 357 VAEEG-TGMAEKAMVVLSSLAAIDDGKEAIVEEGGIAALVEAIEDGSVKG---KEFAILT 412
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
LL L + V+E A+ G++ + + S + K KA LL L
Sbjct: 413 LLQLCSDSVRNRGLLVREGAIPPLVGLSQ-SGSVSVRAKRKAERLLGYL 460
Score = 136 (52.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 66/247 (26%), Positives = 106/247 (42%)
Query: 57 LYSSSHAFQENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXX 114
L SSS A + +AAA L L+ D+ L+ G + A+ +LR +
Sbjct: 192 LRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDPWTQEHAVTA--- 248
Query: 115 XLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVI 174
L +L + D + +I A I SL+ ++KT S ++A AL +AL N+ +
Sbjct: 249 -LLNLSLHDQNKAVIAAG-GAIKSLVWVLKTGTET--SKQNAACALLSLALLEENKGSIG 304
Query: 175 ALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGS 234
A G + PL SL++NG G +DA + ++ +++ E G G+
Sbjct: 305 ACGAIPPLVSLLLNGSCRG-KKDALTTLYKLCTLQQN-KERAVTAGAVKPLVDLVAEEGT 362
Query: 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
G K V + L ++ G E EE A+ + ++GS KGK A+ L L
Sbjct: 363 GMAEKAMVVLSSLAAIDDGKEAIVEEGGIAAL------VEAIEDGSVKGKEFAILTLLQL 416
Query: 295 VDDGNMN 301
D N
Sbjct: 417 CSDSVRN 423
>TAIR|locus:2102455 [details] [associations]
symbol:AT3G54790 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AL138650 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK118613 IPI:IPI00538000 PIR:T47638
RefSeq:NP_191039.2 UniGene:At.1218 UniGene:At.48768
ProteinModelPortal:Q8GWV5 SMR:Q8GWV5 PaxDb:Q8GWV5 PRIDE:Q8GWV5
EnsemblPlants:AT3G54790.1 GeneID:824644 KEGG:ath:AT3G54790
TAIR:At3g54790 eggNOG:NOG259040 InParanoid:Q8GWV5 OMA:LSHFRNQ
PhylomeDB:Q8GWV5 ProtClustDB:CLSN2680413 Genevestigator:Q8GWV5
Uniprot:Q8GWV5
Length = 760
Score = 173 (66.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 76/286 (26%), Positives = 120/286 (41%)
Query: 7 TVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
T++ LV L S S + + + E R I G+I L +LYS QE
Sbjct: 474 TIK-LVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQE 532
Query: 67 NAAATLLNLSITSRDSLMSTR-GLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSY 125
+A LLNLSI+ + M G ++ + HVL L SL V+
Sbjct: 533 HAVTALLNLSISELNKAMIVEVGAIEPLVHVLN----TGNDRAKENSAASLFSLSVLQVN 588
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
R IG I +L+ ++ R KDA ALF +++ N+ +++ V+ L L
Sbjct: 589 RERIGQSNAAIQALVNLLG--KGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVEL 646
Query: 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSA 245
+ +V+ A A++A ++ E + GI GS R KENA S
Sbjct: 647 L--DPDLEMVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDL--GS-QRGKENAASV 701
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291
LL L + ++E A+ + ++Q+G+ + K KA LL
Sbjct: 702 LLQLCLNSPKFCTLVLQEGAIPP---LVALSQSGTQRAKEKAQQLL 744
>TAIR|locus:2195563 [details] [associations]
symbol:PUB19 "plant U-box 19" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
InterPro:IPR001841 InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00184 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842 GO:GO:0000151
EMBL:AC004473 HOGENOM:HOG000238412 HSSP:Q8VZ40 eggNOG:NOG251934
ProtClustDB:CLSN2679599 IPI:IPI00530780 PIR:T02271
RefSeq:NP_176225.1 UniGene:At.66059 ProteinModelPortal:O80742
SMR:O80742 PaxDb:O80742 PRIDE:O80742 EnsemblPlants:AT1G60190.1
GeneID:842314 KEGG:ath:AT1G60190 TAIR:At1g60190 InParanoid:O80742
OMA:TELHVAM PhylomeDB:O80742 Genevestigator:O80742 Uniprot:O80742
Length = 686
Score = 172 (65.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 76/316 (24%), Positives = 131/316 (41%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSS 61
E + T L +L E+ +K R + EAG + L +IL S
Sbjct: 370 EAGKLTAEFLAGELIKGDEEEMVKALVEIRILTKTSTFYRSCLVEAGVVESLMKILRSDD 429
Query: 62 HAFQENAAATLLNLS--ITSRDSLMSTRGL-LDAISHVLRHHXXXXXXXXXXXXXXXLHS 118
QENA A ++NLS I + ++ G L I VL L S
Sbjct: 430 PRIQENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRESRQYAAAALFYLSS 489
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALG 177
L Y +IG D I L+ I+K+ + + ++AL A+ + + P N ++++A G
Sbjct: 490 L---GDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQPDNHWRILAAG 546
Query: 178 GVQPLFSLVVNGGRA-GIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGH 236
V L LV + + G+ D+ A++A++A + + + G+ S
Sbjct: 547 IVPVLLDLVKSEEISDGVTADSMAILAKMAEYPDGMISVLRRGGLKLAVKILGSSEVSP- 605
Query: 237 RVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296
K++ V+ LLNL + GG + + + + + NG G KA AL+K ++
Sbjct: 606 ATKQHCVALLLNLCHNGGSDVVGSLAKNP-SIMGSLYTASSNGELGGGKKASALIK-MIH 663
Query: 297 DGNMNITMTNEEILKK 312
+ T E +L++
Sbjct: 664 EFQERKTGPGEPVLER 679
>TAIR|locus:2181077 [details] [associations]
symbol:SAUR21 "SMALL AUXIN UP RNA 21" species:3702
"Arabidopsis thaliana" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AL162351
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:BT015367 EMBL:BT015725
EMBL:AK229397 IPI:IPI00524109 PIR:T48204 RefSeq:NP_195803.1
UniGene:At.33496 ProteinModelPortal:Q9LZW3 SMR:Q9LZW3 PRIDE:Q9LZW3
EnsemblPlants:AT5G01830.1 GeneID:831850 KEGG:ath:AT5G01830
TAIR:At5g01830 eggNOG:NOG307369 InParanoid:Q9LZW3 OMA:IPADFRC
PhylomeDB:Q9LZW3 ProtClustDB:CLSN2687143 Genevestigator:Q9LZW3
Uniprot:Q9LZW3
Length = 674
Score = 169 (64.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 77/300 (25%), Positives = 126/300 (42%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSS 60
+E + V L+ KL SV++ +K D R I+EAG+IP L L +
Sbjct: 365 VEFTKMMVSFLIEKL-SVADSNGVVFELRAL--AKSDTVARACIAEAGAIPKLVRYLATE 421
Query: 61 SHAFQENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHS 118
+ Q NA T+LNLSI ++ +M T G L+ + VLR L S
Sbjct: 422 CPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLR---SGATWEAKANAAATLFS 478
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L V +YR +G K ++ L+++ K P S +DAL A+ + N + + G
Sbjct: 479 LAGVSAYRRRLGRKARVVSGLVDLAK--QGPTSSKRDALVAILNLVAERENVGRFVEAGV 536
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIA--GCEESVDEFKKCCGIXXXXXXXXXXTGSGH 236
+ + E+A AV+ + G +V + T
Sbjct: 537 MG-----AAGDAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEVMREGADT---- 587
Query: 237 RVKENAVSALLNLVNFGGERAAEEVKEMAM--QVADGIADVAQNGSAKGKTKAVALLKIL 294
+E+A + L+ + GG +E V EMA + I ++ G+A+G KA +L++ L
Sbjct: 588 -TRESAAATLVTMCRKGG---SELVAEMAAIPGIERVIWEMIGAGTARGGRKAASLMRYL 643
>TAIR|locus:2079706 [details] [associations]
symbol:PUB9 "plant U-box 9" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0071215 "cellular response to abscisic
acid stimulus" evidence=IMP] [GO:0046777 "protein
autophosphorylation" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 GO:GO:0009738
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0071215 GO:GO:0004842 GO:GO:0000151
EMBL:AC009853 HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY075636
IPI:IPI00538175 RefSeq:NP_566304.1 UniGene:At.21635
ProteinModelPortal:Q9SRT0 SMR:Q9SRT0 STRING:Q9SRT0 PaxDb:Q9SRT0
PRIDE:Q9SRT0 EnsemblPlants:AT3G07360.1 GeneID:819924
KEGG:ath:AT3G07360 TAIR:At3g07360 eggNOG:NOG271821
InParanoid:Q9SRT0 OMA:LIREMIS PhylomeDB:Q9SRT0
ProtClustDB:CLSN2917129 Genevestigator:Q9SRT0 Uniprot:Q9SRT0
Length = 460
Score = 164 (62.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 74/309 (23%), Positives = 138/309 (44%)
Query: 5 RRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEA-GSIPYLAE-ILYSSS- 61
R SL+ K+ S + Q ++ E R + E+ I L +L+ S+
Sbjct: 168 REIFNSLLCKVSSSNLQDQKSAAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNP 227
Query: 62 -HAFQENAAATLLNLSI---TSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLH 117
QE+ TLLN+SI +++ + ++ + LR +
Sbjct: 228 DEKLQEDVVTTLLNISIHDDSNKKLVCENPNVIPLLIDALRR----GTVATRSNAAAAIF 283
Query: 118 SLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALG 177
+L +DS + +IG K I+ LI++++ N PL ++KD A+F + + NR + + G
Sbjct: 284 TLSALDSNKVLIG-KSGILKPLIDLLEEGN-PL-AIKDVAAAIFTLCIAHENRSRAVRDG 340
Query: 178 GVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHR 237
V+ L + NG V++ A++A + ++V+E + G+ R
Sbjct: 341 AVRVLGKKISNGL---YVDELLAILAMLVTHWKAVEELGELGGVSWLLKITRESECK--R 395
Query: 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADG-IADVAQNGSAKGKTKAVALLKILVD 296
KENA+ +L+ + F +E+KE + A G I +++ G+++ + KA +L L
Sbjct: 396 NKENAI-VILHTICFSDRTKWKEIKEE--ENAHGTITKLSREGTSRAQRKANGILDRLRK 452
Query: 297 DGNMNITMT 305
MN+T T
Sbjct: 453 A--MNLTHT 459
>TAIR|locus:2141226 [details] [associations]
symbol:PUB8 "plant U-box 8" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA;NAS] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00184 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002687
GenomeReviews:CT486007_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL161554 GO:GO:0008270 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:EF637083 EMBL:AL031187 EMBL:EF182720 HSSP:Q8VZ40
IPI:IPI00526364 PIR:T05177 RefSeq:NP_193866.1 UniGene:At.65012
ProteinModelPortal:O81902 SMR:O81902 PaxDb:O81902
EnsemblPlants:AT4G21350.1 GeneID:827885 KEGG:ath:AT4G21350
TAIR:At4g21350 eggNOG:NOG271823 HOGENOM:HOG000272744
InParanoid:O81902 OMA:LCKLPEN PhylomeDB:O81902
ProtClustDB:CLSN2685551 ArrayExpress:O81902 Genevestigator:O81902
Uniprot:O81902
Length = 374
Score = 161 (61.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 66/264 (25%), Positives = 118/264 (44%)
Query: 34 SKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-MSTRGLLDA 92
+K D+ IR ++E+G++ + + S + QE + + LLNLS+ + + + G++
Sbjct: 122 TKRDSSIRRKVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGVIRR 181
Query: 93 ISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS 152
I VLR L SL VV+ + IG+ D I +L+ +++ N R
Sbjct: 182 IVTVLR----VGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGND--RE 235
Query: 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212
K++ AL+ + +P NR +V+ G V P+ +V +G+ E A V+ + C
Sbjct: 236 RKESATALYALCSFPDNRKRVVDCGSV-PI---LVEAADSGL-ERAVEVLGLLVKCRGGR 290
Query: 213 DEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALLN-LVNFGGERAAEEVKEMAMQVADG 271
+E K G G+ ++ + +LN L GE E +E +++ G
Sbjct: 291 EEMSKVSGFVEVLVNVLR-NGNLKGIQYSLF--ILNCLCCCSGEIVDEVKREGVVEICFG 347
Query: 272 IADVAQNGSAKGKTKAVALLKILV 295
D N S K + A L+ L+
Sbjct: 348 FED---NESEKIRRNATILVHTLL 368
>TAIR|locus:2154124 [details] [associations]
symbol:AT5G62560 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AB015469 GO:GO:0000151 HOGENOM:HOG000239874
ProtClustDB:CLSN2719312 EMBL:AY128369 EMBL:BT000351 EMBL:AK227203
IPI:IPI00530696 RefSeq:NP_201062.1 UniGene:At.29043
ProteinModelPortal:Q0WUF6 SMR:Q0WUF6 PaxDb:Q0WUF6 PRIDE:Q0WUF6
EnsemblPlants:AT5G62560.1 GeneID:836376 KEGG:ath:AT5G62560
TAIR:At5g62560 eggNOG:NOG313122 InParanoid:Q0WUF6 OMA:FERACIQ
PhylomeDB:Q0WUF6 Genevestigator:Q0WUF6 Uniprot:Q0WUF6
Length = 559
Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 59/260 (22%), Positives = 111/260 (42%)
Query: 34 SKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR-GLLDA 92
++ ++R + + +L +L S + Q NAAA+++NLS+ ++ + R G +
Sbjct: 262 TRSSEDLRVSLCTDRILSFLRSLLVSRYNLVQTNAAASVVNLSLEKQNKVKIVRSGFVPL 321
Query: 93 ISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS 152
+ VL+ L SL + D + +IG + L+ +++ S R+
Sbjct: 322 LIDVLK----SGTTEAQEHVAGALFSLALEDENKMVIGVL-GAVEPLLHALRSSESE-RA 375
Query: 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212
+DA AL+ ++L P NR +++ G V L S+V +G + V+ +A C +
Sbjct: 376 RQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMVRSGDSTSRI---LLVLCNLAACPDGK 432
Query: 213 DEFKKCCGIXXXXXXXXXXTGS-GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADG 271
+ G +EN V+ LL L G R E + +
Sbjct: 433 GAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTLCQ-GNLRFRGLASEAGAE--EV 489
Query: 272 IADVAQNGSAKGKTKAVALL 291
+ +V +NG+ + K KA +L
Sbjct: 490 LMEVEENGNERVKEKASKIL 509
>TAIR|locus:2100372 [details] [associations]
symbol:PUB39 "PLANT U-BOX 39" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL049746 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40
HOGENOM:HOG000239874 ProtClustDB:CLSN2719312 EMBL:AY091018
EMBL:BT020355 IPI:IPI00534988 PIR:T07721 RefSeq:NP_190366.1
UniGene:At.35768 ProteinModelPortal:Q9STT1 SMR:Q9STT1 PaxDb:Q9STT1
PRIDE:Q9STT1 EnsemblPlants:AT3G47820.1 GeneID:823936
KEGG:ath:AT3G47820 TAIR:At3g47820 eggNOG:NOG271898
InParanoid:Q9STT1 OMA:ARENCVG PhylomeDB:Q9STT1
Genevestigator:Q9STT1 Uniprot:Q9STT1
Length = 509
Score = 152 (58.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 62/251 (24%), Positives = 110/251 (43%)
Query: 53 LAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR-GLLDAISHVLRHHXXXXXXXXXXX 111
L ++ S + Q NAAA+++NLS+ + L R G + + VL+
Sbjct: 230 LRSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLK----SGSTEAQEH 285
Query: 112 XXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171
L SL V + + +IG + L+ +++ S R+ +DA AL+ ++L P NR
Sbjct: 286 VIGALFSLAVEEENKMVIGVL-GAVEPLLHALRSSESE-RARQDAALALYHLSLIPNNRS 343
Query: 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXX 231
+++ G V + S++ +G A + ++ +A C E +
Sbjct: 344 RLVKAGAVPMMLSMIRSGESASRI---LLLLCNLAACSEGKGAMLDGNAVSILVGKLRES 400
Query: 232 TG--SGHRVKENAVSALLNLVNFGGERAAEEVKEM-AMQVADGIADVAQNGSAKGKTKAV 288
G S +EN V ALL L + G R E A ++ I + +++GS + K KA
Sbjct: 401 GGAESDAAARENCVGALLTL-SVGNMRFRGLASEAGAEEILTEIVE-SESGSGRLKEKAS 458
Query: 289 ALLKILVDDGN 299
+L+ L G+
Sbjct: 459 KILQTLRGGGS 469
>TAIR|locus:2096687 [details] [associations]
symbol:AT3G01400 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000225
InterPro:IPR016024 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185
EMBL:CP002686 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:AC010870 ProtClustDB:CLSN2686276 IPI:IPI00535994
RefSeq:NP_566136.1 UniGene:At.20281 ProteinModelPortal:Q9SGH8
SMR:Q9SGH8 PRIDE:Q9SGH8 EnsemblPlants:AT3G01400.1 GeneID:821320
KEGG:ath:AT3G01400 TAIR:At3g01400 InParanoid:Q9SGH8 OMA:VAELECP
PhylomeDB:Q9SGH8 Genevestigator:Q9SGH8 Uniprot:Q9SGH8
Length = 355
Score = 148 (57.2 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 65/263 (24%), Positives = 120/263 (45%)
Query: 34 SKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT--SRDSLMSTRGLLD 91
SK+ E R I++AG+I L ++ SS QE +LNLS+ +++S+ S+ G +
Sbjct: 91 SKNKPENRIKIAKAGAIKPLISLISSSDLQLQEYGVTAILNLSLCDENKESIASS-GAIK 149
Query: 92 AISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151
+ L+ L L ++ + IG + I L+ +++T R
Sbjct: 150 PLVRALK----MGTPTAKENAACALLRLSQIEENKVAIG-RSGAIPLLVNLLETGG--FR 202
Query: 152 SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211
+ KDA AL+ + N+ + + G ++PL L+ + G + +V+ ++ V++ + ES
Sbjct: 203 AKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMADFG-SNMVDKSAFVMSLLMSVPES 261
Query: 212 VDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADG 271
+ G+ T R KE AVS LL L +E A+
Sbjct: 262 KPAIVEEGGVPVLVEIVEVGT---QRQKEMAVSILLQLCEESVVYRTMVAREGAIPP--- 315
Query: 272 IADVAQNGSAKGKTKAVALLKIL 294
+ ++Q G+++ K KA AL+++L
Sbjct: 316 LVALSQAGTSRAKQKAEALIELL 338
>TAIR|locus:2178818 [details] [associations]
symbol:AT5G58680 "AT5G58680" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009693 "ethylene
biosynthetic process" evidence=RCA] InterPro:IPR000225
InterPro:IPR016024 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185
EMBL:CP002688 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:AY084344 EMBL:DQ447090 IPI:IPI00540553 RefSeq:NP_200676.1
UniGene:At.29268 ProteinModelPortal:Q8LGC7 SMR:Q8LGC7
EnsemblPlants:AT5G58680.1 GeneID:835982 KEGG:ath:AT5G58680
TAIR:At5g58680 HOGENOM:HOG000084464 InParanoid:Q8LGC7 OMA:LCSTNEN
PhylomeDB:Q8LGC7 ProtClustDB:CLSN2686276 Genevestigator:Q8LGC7
Uniprot:Q8LGC7
Length = 357
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 68/290 (23%), Positives = 127/290 (43%)
Query: 8 VRSLVTKLGSVSE-QTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
+R+L+T L S S + SK+ E R +++AG+I L ++ SS QE
Sbjct: 62 IRNLITHLESSSSIEEQKQAAMEIRLLSKNKPENRIKLAKAGAIKPLVSLISSSDLQLQE 121
Query: 67 NAAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSY 125
+LNLS+ + ++ + G + + + LR L L V+
Sbjct: 122 YGVTAVLNLSLCDENKEMIVSSGAVKPLVNALR----LGTPTTKENAACALLRLSQVEEN 177
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+ IG + I L+ +++ N R+ KDA AL+ + N+ + + G ++PL L
Sbjct: 178 KITIG-RSGAIPLLVNLLE--NGGFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVEL 234
Query: 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSA 245
+++ + +V+ ++ V+ + ES + G+ T R KE +VS
Sbjct: 235 MIDF-ESDMVDKSAFVMNLLMSAPESKPAVVEEGGVPVLVEIVEAGT---QRQKEISVSI 290
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKG-KTKAVALLKIL 294
LL L +E A+ + ++Q +++G K KA AL+++L
Sbjct: 291 LLQLCEESVVYRTMVAREGAVPP---LVALSQGSASRGAKVKAEALIELL 337
>TAIR|locus:2173742 [details] [associations]
symbol:AT5G40140 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB010699 HSSP:Q8VZ40
eggNOG:NOG286330 HOGENOM:HOG000239874 IPI:IPI00517649
RefSeq:NP_198830.1 UniGene:At.55272 ProteinModelPortal:Q9FL17
SMR:Q9FL17 PRIDE:Q9FL17 EnsemblPlants:AT5G40140.1 GeneID:834011
KEGG:ath:AT5G40140 TAIR:At5g40140 InParanoid:Q9FL17 OMA:VLLILCN
Genevestigator:Q9FL17 Uniprot:Q9FL17
Length = 550
Score = 141 (54.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 69/304 (22%), Positives = 121/304 (39%)
Query: 10 SLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAA 69
+L+TKL S ++ D R + I L ++ S Q N
Sbjct: 232 ALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSLIVSRYATVQVNVT 291
Query: 70 ATLLNLSITSRDSLMSTR-GLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPI 128
A L+NLS+ + + R G++ + VL+ + SL + D +
Sbjct: 292 AVLVNLSLEKSNKVKIVRSGIVPPLIDVLK----CGSVEAQEHSAGVIFSLALEDENKTA 347
Query: 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVN 188
IG + L+ +I+ R D+ AL+ ++L NR +++ LG VQ L +V
Sbjct: 348 IGVLGGL-EPLLHLIRVGTELTRH--DSALALYHLSLVQSNRGKLVKLGAVQMLLGMVSL 404
Query: 189 GGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALLN 248
G G V ++ +A C S G+ +E+ V+ L
Sbjct: 405 GQMIGRV---LLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVAVLYG 461
Query: 249 LVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL---VDDGNMNITMT 305
L + GG R + MA + + V ++G + K KA +L++L ++D ++ +
Sbjct: 462 LSHDGGLRF--KGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDL---VE 516
Query: 306 NEEI 309
NEEI
Sbjct: 517 NEEI 520
>TAIR|locus:2008813 [details] [associations]
symbol:AT1G67530 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC011020 HSSP:Q8VZ40
HOGENOM:HOG000082565 ProtClustDB:CLSN2679347 EMBL:AK117197
EMBL:BT006484 IPI:IPI00538541 PIR:G96698 RefSeq:NP_001154455.1
RefSeq:NP_176920.1 UniGene:At.35639 UniGene:At.66850
ProteinModelPortal:Q9CAG5 SMR:Q9CAG5 IntAct:Q9CAG5 PaxDb:Q9CAG5
PRIDE:Q9CAG5 EnsemblPlants:AT1G67530.1 EnsemblPlants:AT1G67530.2
GeneID:843074 KEGG:ath:AT1G67530 TAIR:At1g67530 eggNOG:NOG240771
InParanoid:Q9CAG5 OMA:GELENTR PhylomeDB:Q9CAG5
Genevestigator:Q9CAG5 Uniprot:Q9CAG5
Length = 782
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 60/269 (22%), Positives = 119/269 (44%)
Query: 35 KHDAEIRPMISEAGSIPYLAEILYSS----SHAFQENAAATLLNLSITSRDS--LMSTRG 88
K D E R + G + L L S+ + A Q++ A L NL++ + + LM T G
Sbjct: 453 KDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSG 512
Query: 89 LLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS 148
++ + ++ L+ L +D + +IG+ + + L+++++ +
Sbjct: 513 VIRLLEKMI-----SSAESHGSATALYLN-LSCLDEAKSVIGSSQ-AVPFLVQLLQ-KEI 564
Query: 149 PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208
+ DAL AL+ ++ Y N +++ ++ L L+ + G +E + AV+ +A
Sbjct: 565 ETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLASS 624
Query: 209 EESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQV 268
+E DE G+ + + E AVS LL L N G E + V + V
Sbjct: 625 QEGKDEAVSSQGMISSLATVLDMGDTTEQ--EQAVSCLLILCN-GRESCIQMVLQEG--V 679
Query: 269 ADGIADVAQNGSAKGKTKAVALLKILVDD 297
+ ++ NG+ +G+ K+ LL + ++
Sbjct: 680 IPSLVSISVNGTPRGREKSQKLLMLFREE 708
>TAIR|locus:2032472 [details] [associations]
symbol:AT1G24330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AC002396
HSSP:Q8VZ40 eggNOG:NOG251146 HOGENOM:HOG000082565
ProtClustDB:CLSN2679347 IPI:IPI00520534 PIR:T00664
RefSeq:NP_173843.2 UniGene:At.41444 ProteinModelPortal:O48700
SMR:O48700 PaxDb:O48700 PRIDE:O48700 EnsemblPlants:AT1G24330.1
GeneID:839049 KEGG:ath:AT1G24330 TAIR:At1g24330 InParanoid:O48700
OMA:RILMGAN PhylomeDB:O48700 Genevestigator:O48700 Uniprot:O48700
Length = 771
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 63/281 (22%), Positives = 120/281 (42%)
Query: 35 KHDAEIRPMISEAGSIPYLAEILYSSSH----AFQENAAATLLNLSITSRDS--LMSTRG 88
K + E R ++ G + + L S+ H A QE A L NL++ + + LM T G
Sbjct: 453 KDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSG 512
Query: 89 LLDAISHVLRHHXXXXXXXXXXXXXXXLH-SLLVVDSYRPIIGAKRDIIHSLIEIIKTRN 147
++ + ++ L+ +L ++ +P+IG+ + + S + ++
Sbjct: 513 VIPLLEKMI-------SCSQSQGPATALYLNLSCLEKAKPVIGSSQAV--SFFVNLLLQD 563
Query: 148 SPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207
+ + DAL AL+ ++ Y N +++ ++ L L G I E + AV+ +A
Sbjct: 564 TKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWI-EKSLAVLLNLAS 622
Query: 208 CEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ 267
E +E G+ TG +E AVS L+ L G E + V +
Sbjct: 623 SREGKEEMITTQGMISTLATVLD-TGDTVE-QEQAVSCLVILCT-GSESCIQMVLQEG-- 677
Query: 268 VADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEE 308
V + ++ NGS +G+ K+ LL + + + + N+E
Sbjct: 678 VIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPNKE 718
>TAIR|locus:2171810 [details] [associations]
symbol:PUB38 "plant U-box 38" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0019894 "kinesin binding" evidence=IEA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AB013395 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40
EMBL:BT015352 EMBL:BT015720 IPI:IPI00548483 RefSeq:NP_201323.1
UniGene:At.49809 ProteinModelPortal:Q9FJP6 SMR:Q9FJP6 STRING:Q9FJP6
PRIDE:Q9FJP6 EnsemblPlants:AT5G65200.1 GeneID:836643
KEGG:ath:AT5G65200 TAIR:At5g65200 eggNOG:NOG286330
HOGENOM:HOG000239874 InParanoid:Q9FJP6 OMA:RTRHDSA PhylomeDB:Q9FJP6
ProtClustDB:CLSN2719312 Genevestigator:Q9FJP6 Uniprot:Q9FJP6
Length = 556
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 67/271 (24%), Positives = 116/271 (42%)
Query: 39 EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR-GLLDAISHVL 97
E R + + L ++ S Q NA A+L+NLS+ ++ L R G + + VL
Sbjct: 257 EARVSLCSPRILSLLKNMIVSRYSLVQTNALASLVNLSLDKKNKLTIVRLGFVPILIDVL 316
Query: 98 RHHXXXXXXXXXXXXXXXLHSLLVVDSYR-PI--IGAKRDIIHSLIEIIKTRNSPLRSVK 154
+ + SL + D + PI +GA + ++H+L + S R+
Sbjct: 317 K----SGSREAQEHAAGTIFSLSLEDDNKMPIGVLGALQPLLHAL----RAAESD-RTRH 367
Query: 155 DALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDE 214
D+ AL+ + L NR +++ LG V LFS+V +G A A VI +A C E
Sbjct: 368 DSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESAS---RALLVICNLACCSEGRSA 424
Query: 215 FKKCCGIXXXXXXXX-------XXTGSGHRVKENAVSALLNL----VNFGGERAAEEVKE 263
+ S +EN V+AL L + F G A+E +
Sbjct: 425 MLDANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFALSHESLRFKG--LAKEAR- 481
Query: 264 MAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
A++V + +V + G+ + + KA +L+++
Sbjct: 482 -AVEV---LKEVEERGTERAREKAKKILQLM 508
>TAIR|locus:2010424 [details] [associations]
symbol:PUB45 "plant U-box 45" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0019894 "kinesin binding" evidence=IEA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069471
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AY094469 EMBL:BT002721 EMBL:AK230080
IPI:IPI00517206 PIR:D86404 RefSeq:NP_174112.1 UniGene:At.22435
ProteinModelPortal:Q9C7G1 SMR:Q9C7G1 PRIDE:Q9C7G1
EnsemblPlants:AT1G27910.1 GeneID:839684 KEGG:ath:AT1G27910
TAIR:At1g27910 eggNOG:NOG251146 HOGENOM:HOG000082565
InParanoid:Q9C7G1 OMA:SENMSIP PhylomeDB:Q9C7G1
ProtClustDB:CLSN2679347 Genevestigator:Q9C7G1 Uniprot:Q9C7G1
Length = 768
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 64/267 (23%), Positives = 117/267 (43%)
Query: 35 KHDAEIRPMISEAGSIPYLAEILYSSSH----AFQENAAATLLNLSI-TSRDS-LMSTRG 88
K D E R ++ E G + L + L S+ + + Q+ A L NL++ +R+ LM G
Sbjct: 451 KDDEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASG 510
Query: 89 LLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS 148
++ + +L + +L ++ +P+IG+ + ++ ++ T
Sbjct: 511 IIPLLEEMLCNPHSHGSVTAIYL------NLSCLEEAKPVIGSSL-AVPFMVNLLWTETE 563
Query: 149 PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208
V DAL +LF ++ YP N +++ V L SL ++ + E + AV+ +
Sbjct: 564 VQCKV-DALHSLFHLSTYPPNIPCLLSADLVNALQSLTISDEQRW-TEKSLAVLLNLVLN 621
Query: 209 EESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ- 267
E DE + TG + +E AVS LL L N +E EM +Q
Sbjct: 622 EAGKDEMVSAPSLVSNLCTILD-TGEPNE-QEQAVSLLLILCNH-----SEICSEMVLQE 674
Query: 268 -VADGIADVAQNGSAKGKTKAVALLKI 293
V + ++ NG+ +G+ +A LL +
Sbjct: 675 GVIPSLVSISVNGTQRGRERAQKLLTL 701
>TAIR|locus:2099634 [details] [associations]
symbol:AT3G03440 "AT3G03440" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000225 InterPro:IPR016024
Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 EMBL:CP002686
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
IPI:IPI00522077 RefSeq:NP_186994.2 UniGene:At.40980
ProteinModelPortal:F4J139 SMR:F4J139 EnsemblPlants:AT3G03440.1
GeneID:821253 KEGG:ath:AT3G03440 OMA:VRDERNK Uniprot:F4J139
Length = 408
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 57/248 (22%), Positives = 109/248 (43%)
Query: 51 PYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST--RGLLDAISHVLRHHXXXXXXXX 108
P ++ + + S + E A LLNL++ + +S G L+ I + L+ +
Sbjct: 108 PLVSMLRFDSPESHHEAALLALLNLAVKDEKNKVSIIEAGALEPIINFLQSNSPTLQEYA 167
Query: 109 XXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168
L +L + +PIIGA ++ L+++IK SP ++ DA+ AL ++ P
Sbjct: 168 SAS----LLTLSASANNKPIIGAN-GVVPLLVKVIK-HGSP-QAKADAVMALSNLSTLPD 220
Query: 169 NRYQVIALGGVQPLFSLVVNGGRAGIVED--ASAVIAQIAGCEESVDEFKKCCGIXXXXX 226
N ++A + P+ +L+ + ++ + S + A + EE+ G
Sbjct: 221 NLSMILATKPLSPILNLLKSSKKSSKTSEKCCSLIEALMVSGEEARTGLVSDEG-GVLAV 279
Query: 227 XXXXXTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTK 286
GS + +E+AV LL L + E + + V G+ ++ G++K + K
Sbjct: 280 VEVLENGS-LQAREHAVGVLLTLCQSDRSKYREPI--LREGVIPGLLELTVQGTSKSRIK 336
Query: 287 AVALLKIL 294
A LL +L
Sbjct: 337 AQRLLCLL 344
>TAIR|locus:2146183 [details] [associations]
symbol:AT5G18320 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
IPI:IPI00534776 RefSeq:NP_197333.2 UniGene:At.54897
ProteinModelPortal:Q3E9F7 SMR:Q3E9F7 PaxDb:Q3E9F7 PRIDE:Q3E9F7
EnsemblPlants:AT5G18320.1 GeneID:831950 KEGG:ath:AT5G18320
TAIR:At5g18320 eggNOG:NOG312656 InParanoid:Q3E9F7 OMA:NTIMIEP
PhylomeDB:Q3E9F7 ProtClustDB:CLSN2686550 Genevestigator:Q3E9F7
Uniprot:Q3E9F7
Length = 458
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 52/233 (22%), Positives = 94/233 (40%)
Query: 60 SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSL 119
SS QEN L NLSI + + L + +L L SL
Sbjct: 222 SSLELQENIVTALFNLSILESNKTVIAENCL--VIPLLTKSLKQGTDETRRNAAATLSSL 279
Query: 120 LVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGV 179
+DS + IIG + + +LI++I+ L + K+A +F + + N+ +V++ G +
Sbjct: 280 SAIDSNKIIIG-NSEAVKALIDLIE--EGDLLATKEATSTVFNLCIVLENKGKVVSAGLI 336
Query: 180 QPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVK 239
+ G V++ +++A I+ +V+E K G S
Sbjct: 337 HAATKKIKAGSN---VDELLSLLALISTHNRAVEEMDKL-GFIYDLFSILRKPSS-LLTG 391
Query: 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
ENAV + N+ + +R+ +V +A+ GS + KA +L+
Sbjct: 392 ENAVVIVFNMYDRNRDRSRLKVVGEEENQHGTFTKLAKQGSVRAARKAQGILQ 444
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 315 279 0.00081 115 3 11 22 0.37 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 556 (59 KB)
Total size of DFA: 146 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.21u 0.16s 18.37t Elapsed: 00:00:01
Total cpu time: 18.21u 0.16s 18.37t Elapsed: 00:00:01
Start: Sat May 11 08:40:09 2013 End: Sat May 11 08:40:10 2013