Query 021242
Match_columns 315
No_of_seqs 133 out of 1422
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.7E-29 3.8E-34 262.1 32.4 287 2-298 9-314 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.2E-29 4.7E-34 261.4 32.6 282 4-299 444-767 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.7E-29 3.7E-34 232.2 26.8 283 6-299 109-396 (514)
4 KOG0166 Karyopherin (importin) 100.0 5.2E-29 1.1E-33 229.0 24.4 279 5-295 151-435 (514)
5 KOG4224 Armadillo repeat prote 100.0 5.2E-28 1.1E-32 210.2 20.3 277 6-297 167-447 (550)
6 KOG4224 Armadillo repeat prote 100.0 9.1E-28 2E-32 208.7 19.0 277 6-295 126-404 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-27 5.5E-32 204.4 19.0 277 5-294 156-441 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 3E-27 6.5E-32 203.9 18.1 278 6-297 114-399 (526)
9 PF05804 KAP: Kinesin-associat 99.9 6E-21 1.3E-25 184.6 28.3 282 3-297 287-650 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.7E-19 6E-24 173.2 26.6 263 13-297 257-521 (708)
11 KOG1048 Neural adherens juncti 99.8 6.9E-20 1.5E-24 174.0 18.2 292 6-305 233-604 (717)
12 KOG4199 Uncharacterized conser 99.8 1.3E-17 2.8E-22 144.3 23.1 276 11-296 150-444 (461)
13 KOG1048 Neural adherens juncti 99.8 1.8E-16 3.9E-21 150.9 21.9 288 6-299 275-687 (717)
14 PF04826 Arm_2: Armadillo-like 99.7 7.6E-16 1.6E-20 133.3 20.6 195 5-208 11-206 (254)
15 KOG2122 Beta-catenin-binding p 99.7 6.3E-16 1.4E-20 153.4 19.7 280 6-298 290-603 (2195)
16 KOG4199 Uncharacterized conser 99.7 1.2E-14 2.7E-19 126.0 24.8 269 16-296 117-403 (461)
17 PF04826 Arm_2: Armadillo-like 99.7 1.1E-14 2.3E-19 126.1 21.4 230 44-286 8-252 (254)
18 PF10508 Proteasom_PSMB: Prote 99.6 4.8E-12 1E-16 121.0 27.9 278 4-296 75-366 (503)
19 KOG2122 Beta-catenin-binding p 99.5 7.7E-13 1.7E-17 132.0 15.3 226 21-253 366-603 (2195)
20 KOG1222 Kinesin associated pro 99.5 2.5E-11 5.3E-16 110.2 22.1 280 5-297 303-664 (791)
21 PF10508 Proteasom_PSMB: Prote 99.4 2.9E-10 6.4E-15 108.8 26.6 271 9-295 41-318 (503)
22 cd00020 ARM Armadillo/beta-cat 99.4 1.2E-11 2.6E-16 95.0 13.2 114 4-121 5-120 (120)
23 cd00020 ARM Armadillo/beta-cat 99.4 4E-11 8.6E-16 92.0 14.7 117 172-295 2-119 (120)
24 KOG4500 Rho/Rac GTPase guanine 99.3 2.8E-10 6E-15 102.2 20.8 284 7-297 88-432 (604)
25 KOG4500 Rho/Rac GTPase guanine 99.3 4.7E-10 1E-14 100.7 19.8 276 9-295 226-518 (604)
26 PRK09687 putative lyase; Provi 99.3 1E-09 2.2E-14 97.1 20.8 226 4-292 21-278 (280)
27 cd00256 VATPase_H VATPase_H, r 99.3 3E-09 6.6E-14 98.2 23.9 279 6-294 101-423 (429)
28 PRK09687 putative lyase; Provi 99.2 3.4E-09 7.5E-14 93.7 20.5 97 49-165 24-120 (280)
29 PF03224 V-ATPase_H_N: V-ATPas 99.2 8.1E-10 1.8E-14 99.6 16.8 256 27-291 31-309 (312)
30 KOG1222 Kinesin associated pro 99.2 2.9E-09 6.2E-14 97.0 19.9 267 7-295 261-533 (791)
31 PF03224 V-ATPase_H_N: V-ATPas 99.2 4.7E-10 1E-14 101.2 14.4 223 7-231 56-294 (312)
32 PRK13800 putative oxidoreducta 99.0 9.4E-08 2E-12 97.8 24.9 226 5-294 620-865 (897)
33 KOG2160 Armadillo/beta-catenin 99.0 1.3E-07 2.7E-12 83.9 20.3 186 16-207 93-282 (342)
34 KOG0946 ER-Golgi vesicle-tethe 99.0 5.6E-07 1.2E-11 86.5 25.3 281 5-297 21-347 (970)
35 PRK13800 putative oxidoreducta 98.9 4.3E-07 9.3E-12 93.0 25.6 227 5-292 651-895 (897)
36 KOG2973 Uncharacterized conser 98.9 3.8E-07 8.2E-12 79.1 19.8 272 8-296 5-315 (353)
37 PF01602 Adaptin_N: Adaptin N 98.9 3.6E-07 7.8E-12 88.3 20.2 253 6-295 114-368 (526)
38 KOG0168 Putative ubiquitin fus 98.8 1.3E-07 2.7E-12 91.5 16.3 155 133-297 210-365 (1051)
39 cd00256 VATPase_H VATPase_H, r 98.8 1.1E-06 2.3E-11 81.5 21.1 222 5-231 52-288 (429)
40 KOG2759 Vacuolar H+-ATPase V1 98.8 1.9E-06 4E-11 77.8 21.5 279 6-294 114-436 (442)
41 KOG2160 Armadillo/beta-catenin 98.8 1.1E-06 2.3E-11 78.1 19.4 186 104-296 95-283 (342)
42 PF01602 Adaptin_N: Adaptin N 98.8 7.5E-07 1.6E-11 86.1 19.9 257 6-300 79-337 (526)
43 KOG0168 Putative ubiquitin fus 98.7 1.1E-06 2.4E-11 85.1 18.1 215 5-229 210-436 (1051)
44 KOG2171 Karyopherin (importin) 98.7 1.5E-06 3.3E-11 86.8 19.3 243 8-256 350-599 (1075)
45 KOG2023 Nuclear transport rece 98.6 9.5E-07 2.1E-11 83.6 14.8 287 6-313 128-477 (885)
46 KOG1293 Proteins containing ar 98.6 2.4E-06 5.3E-11 80.8 16.3 172 40-219 369-546 (678)
47 KOG3678 SARM protein (with ste 98.5 8.3E-06 1.8E-10 74.6 17.4 262 5-297 179-453 (832)
48 KOG4646 Uncharacterized conser 98.4 3.6E-06 7.8E-11 64.6 10.7 153 134-294 16-168 (173)
49 PF00514 Arm: Armadillo/beta-c 98.4 2.5E-07 5.4E-12 56.9 3.6 40 37-76 1-40 (41)
50 KOG1293 Proteins containing ar 98.4 3.3E-05 7.1E-10 73.4 18.6 151 105-263 390-544 (678)
51 PTZ00429 beta-adaptin; Provisi 98.4 0.00015 3.2E-09 72.3 23.6 183 8-207 142-326 (746)
52 KOG0946 ER-Golgi vesicle-tethe 98.4 0.00035 7.5E-09 67.9 24.8 253 4-263 59-357 (970)
53 KOG4646 Uncharacterized conser 98.3 4.7E-06 1E-10 63.9 9.4 133 86-229 14-147 (173)
54 PF05536 Neurochondrin: Neuroc 98.3 5.3E-05 1.1E-09 73.2 17.4 192 88-294 5-211 (543)
55 KOG2973 Uncharacterized conser 98.3 3E-05 6.4E-10 67.6 13.8 191 91-294 6-202 (353)
56 KOG2171 Karyopherin (importin) 98.3 0.00049 1.1E-08 69.5 23.9 258 19-295 262-545 (1075)
57 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00011 2.4E-09 66.6 17.1 231 11-250 161-437 (442)
58 PF05536 Neurochondrin: Neuroc 98.2 0.00019 4.1E-09 69.4 20.0 235 3-251 2-261 (543)
59 KOG1789 Endocytosis protein RM 98.2 0.0006 1.3E-08 68.3 22.9 255 9-278 1774-2141(2235)
60 KOG2734 Uncharacterized conser 98.1 0.0012 2.5E-08 60.5 21.2 243 4-251 123-400 (536)
61 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00067 1.4E-08 62.5 20.0 254 28-294 5-267 (371)
62 PF00514 Arm: Armadillo/beta-c 98.1 7.1E-06 1.5E-10 50.3 4.8 41 208-251 1-41 (41)
63 PF10165 Ric8: Guanine nucleot 98.1 0.0014 3.1E-08 62.0 22.3 233 17-253 43-339 (446)
64 PTZ00429 beta-adaptin; Provisi 98.1 0.002 4.4E-08 64.3 24.2 254 3-295 29-284 (746)
65 PF13646 HEAT_2: HEAT repeats; 98.0 2.6E-05 5.7E-10 56.2 7.7 86 8-116 1-87 (88)
66 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0029 6.2E-08 58.3 22.3 167 9-186 28-197 (371)
67 TIGR02270 conserved hypothetic 98.0 0.0015 3.1E-08 61.0 20.5 152 6-206 54-206 (410)
68 smart00185 ARM Armadillo/beta- 98.0 2.1E-05 4.5E-10 47.9 5.1 40 38-77 2-41 (41)
69 KOG1059 Vesicle coat complex A 97.9 0.0073 1.6E-07 58.5 23.0 262 5-303 143-409 (877)
70 PF13646 HEAT_2: HEAT repeats; 97.9 0.00015 3.2E-09 52.2 8.8 87 50-161 1-88 (88)
71 KOG3678 SARM protein (with ste 97.8 0.00027 5.8E-09 65.0 12.0 161 126-294 173-334 (832)
72 KOG0212 Uncharacterized conser 97.8 0.00087 1.9E-08 63.0 14.9 230 8-251 210-444 (675)
73 KOG2023 Nuclear transport rece 97.8 0.0004 8.7E-09 66.4 12.7 275 5-300 173-509 (885)
74 COG5369 Uncharacterized conser 97.8 0.00011 2.5E-09 68.4 8.3 272 8-295 433-740 (743)
75 KOG1242 Protein containing ada 97.7 0.0084 1.8E-07 57.2 20.1 278 6-298 134-447 (569)
76 COG5240 SEC21 Vesicle coat com 97.7 0.0053 1.1E-07 58.1 18.3 263 8-300 266-559 (898)
77 KOG2734 Uncharacterized conser 97.6 0.018 3.9E-07 53.0 20.3 246 26-279 104-374 (536)
78 KOG4413 26S proteasome regulat 97.6 0.022 4.8E-07 50.6 19.9 290 6-307 82-391 (524)
79 PF10165 Ric8: Guanine nucleot 97.6 0.011 2.3E-07 56.1 19.1 267 26-296 1-337 (446)
80 PF11841 DUF3361: Domain of un 97.5 0.0038 8.3E-08 49.9 13.1 131 129-263 7-143 (160)
81 COG1413 FOG: HEAT repeat [Ener 97.5 0.051 1.1E-06 49.4 22.1 156 6-208 43-210 (335)
82 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.028 6E-07 49.8 18.7 227 61-295 162-427 (432)
83 PF12348 CLASP_N: CLASP N term 97.5 0.0011 2.4E-08 56.8 10.3 179 16-207 17-206 (228)
84 KOG2259 Uncharacterized conser 97.3 0.0033 7.1E-08 60.3 12.0 232 53-314 203-493 (823)
85 KOG1062 Vesicle coat complex A 97.3 0.079 1.7E-06 52.2 21.4 253 9-290 110-408 (866)
86 TIGR02270 conserved hypothetic 97.3 0.041 8.8E-07 51.5 19.0 197 7-251 87-296 (410)
87 smart00185 ARM Armadillo/beta- 97.3 0.00078 1.7E-08 40.7 5.1 39 209-250 2-40 (41)
88 KOG1059 Vesicle coat complex A 97.2 0.036 7.8E-07 53.9 17.6 182 3-206 178-364 (877)
89 KOG0212 Uncharacterized conser 97.2 0.025 5.5E-07 53.5 16.1 281 4-299 82-409 (675)
90 KOG1789 Endocytosis protein RM 97.1 0.011 2.4E-07 59.7 13.9 138 109-251 1742-1883(2235)
91 KOG4413 26S proteasome regulat 97.1 0.099 2.1E-06 46.6 17.8 282 7-296 129-439 (524)
92 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0011 2.4E-08 43.2 4.0 55 20-75 1-55 (55)
93 KOG1078 Vesicle coat complex C 97.0 0.11 2.3E-06 51.3 18.3 257 8-296 247-532 (865)
94 KOG1077 Vesicle coat complex A 97.0 0.2 4.2E-06 49.0 19.8 260 4-288 109-425 (938)
95 KOG0213 Splicing factor 3b, su 97.0 0.18 3.8E-06 49.6 19.6 250 8-296 801-1065(1172)
96 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.0028 6.2E-08 48.1 6.0 72 4-75 41-113 (119)
97 PF12348 CLASP_N: CLASP N term 96.9 0.019 4.2E-07 49.1 12.1 182 104-296 19-206 (228)
98 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.014 2.9E-07 43.0 9.1 69 220-295 28-96 (97)
99 KOG2611 Neurochondrin/leucine- 96.9 0.34 7.5E-06 45.4 19.8 189 53-251 16-225 (698)
100 COG5181 HSH155 U2 snRNP splice 96.8 0.36 7.8E-06 46.6 20.1 266 6-309 604-881 (975)
101 KOG1242 Protein containing ada 96.8 0.3 6.6E-06 46.9 19.9 251 7-286 97-352 (569)
102 PF11841 DUF3361: Domain of un 96.8 0.046 1E-06 43.8 12.2 119 171-294 5-129 (160)
103 COG5369 Uncharacterized conser 96.8 0.015 3.3E-07 54.7 10.6 184 25-216 408-603 (743)
104 KOG1241 Karyopherin (importin) 96.8 0.1 2.2E-06 51.2 16.6 235 9-252 367-627 (859)
105 KOG1241 Karyopherin (importin) 96.7 0.11 2.4E-06 50.9 16.6 237 9-258 262-537 (859)
106 PF09759 Atx10homo_assoc: Spin 96.7 0.015 3.3E-07 43.0 8.2 66 194-262 2-68 (102)
107 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0063 1.4E-07 39.5 5.5 55 236-294 1-55 (55)
108 KOG3036 Protein involved in ce 96.6 0.088 1.9E-06 45.0 13.2 148 21-174 94-256 (293)
109 PF08045 CDC14: Cell division 96.6 0.031 6.6E-07 48.5 10.9 101 151-252 106-208 (257)
110 PF08569 Mo25: Mo25-like; Int 96.6 0.56 1.2E-05 42.7 19.9 256 21-297 14-284 (335)
111 KOG1824 TATA-binding protein-i 96.6 0.18 3.9E-06 50.8 16.9 270 10-297 9-287 (1233)
112 PF12717 Cnd1: non-SMC mitotic 96.6 0.1 2.2E-06 43.0 13.4 111 19-144 1-111 (178)
113 PF14668 RICTOR_V: Rapamycin-i 96.5 0.017 3.6E-07 40.0 7.1 67 153-219 4-70 (73)
114 PF04063 DUF383: Domain of unk 96.5 0.047 1E-06 45.5 11.1 106 189-296 6-132 (192)
115 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.63 1.4E-05 47.1 20.7 238 5-251 116-406 (802)
116 KOG1062 Vesicle coat complex A 96.4 0.47 1E-05 47.1 18.7 214 19-252 307-545 (866)
117 KOG3036 Protein involved in ce 96.4 0.057 1.2E-06 46.1 11.1 98 195-294 96-195 (293)
118 PF09759 Atx10homo_assoc: Spin 96.4 0.014 3E-07 43.2 6.6 66 153-218 3-71 (102)
119 PF04063 DUF383: Domain of unk 96.4 0.028 6E-07 46.8 9.0 120 109-229 12-157 (192)
120 COG1413 FOG: HEAT repeat [Ener 96.3 0.81 1.8E-05 41.5 22.4 155 5-205 73-240 (335)
121 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.018 4E-07 42.3 6.5 92 23-120 3-95 (97)
122 COG5240 SEC21 Vesicle coat com 96.1 0.75 1.6E-05 44.2 17.6 167 62-249 278-458 (898)
123 PF04078 Rcd1: Cell differenti 96.1 0.1 2.2E-06 45.2 11.1 148 21-174 65-227 (262)
124 KOG1061 Vesicle coat complex A 96.1 0.16 3.5E-06 49.9 13.4 72 5-79 120-191 (734)
125 KOG4151 Myosin assembly protei 95.9 0.47 1E-05 46.9 16.1 221 39-278 495-723 (748)
126 KOG4151 Myosin assembly protei 95.8 0.12 2.6E-06 50.9 11.7 190 81-289 497-692 (748)
127 COG5215 KAP95 Karyopherin (imp 95.8 1.9 4E-05 41.6 18.7 107 2-118 90-204 (858)
128 KOG2259 Uncharacterized conser 95.7 0.41 8.9E-06 46.5 14.2 180 7-204 235-472 (823)
129 KOG1077 Vesicle coat complex A 95.6 2.4 5.2E-05 41.8 18.9 54 174-229 457-512 (938)
130 KOG1824 TATA-binding protein-i 95.6 3 6.6E-05 42.5 20.0 164 11-187 573-744 (1233)
131 PF04078 Rcd1: Cell differenti 95.6 0.71 1.5E-05 40.1 14.0 144 149-294 8-166 (262)
132 PF12719 Cnd3: Nuclear condens 95.5 1.7 3.8E-05 38.8 17.5 172 48-231 26-209 (298)
133 KOG1061 Vesicle coat complex A 95.4 0.28 6.1E-06 48.3 12.2 107 6-124 86-192 (734)
134 KOG2999 Regulator of Rac1, req 95.3 0.65 1.4E-05 44.3 13.9 167 89-263 84-254 (713)
135 PF05004 IFRD: Interferon-rela 95.3 1.5 3.2E-05 39.5 16.0 193 8-205 45-255 (309)
136 KOG1517 Guanine nucleotide bin 95.3 0.7 1.5E-05 47.3 14.7 259 21-296 451-732 (1387)
137 PF12717 Cnd1: non-SMC mitotic 95.3 0.9 2E-05 37.3 13.6 86 5-98 24-111 (178)
138 COG5096 Vesicle coat complex, 95.2 0.35 7.6E-06 48.3 12.6 103 50-166 94-196 (757)
139 KOG1517 Guanine nucleotide bin 95.2 1.5 3.3E-05 45.0 16.8 225 21-253 485-734 (1387)
140 PF08569 Mo25: Mo25-like; Int 94.9 0.67 1.5E-05 42.2 12.7 195 6-209 76-285 (335)
141 PF08324 PUL: PUL domain; Int 94.8 0.15 3.3E-06 44.8 8.2 192 50-242 65-265 (268)
142 KOG0213 Splicing factor 3b, su 94.7 2.3 4.9E-05 42.3 16.1 269 5-299 635-915 (1172)
143 PF02985 HEAT: HEAT repeat; I 94.7 0.039 8.5E-07 31.2 2.8 28 50-77 2-29 (31)
144 COG5231 VMA13 Vacuolar H+-ATPa 94.7 3.1 6.6E-05 37.3 15.7 225 16-250 159-427 (432)
145 PF08045 CDC14: Cell division 94.7 0.37 8.1E-06 41.9 10.0 98 21-120 106-206 (257)
146 PF02985 HEAT: HEAT repeat; I 94.7 0.077 1.7E-06 30.0 3.9 28 8-35 2-29 (31)
147 PF12719 Cnd3: Nuclear condens 94.6 1.5 3.3E-05 39.2 14.3 161 13-187 34-207 (298)
148 KOG2999 Regulator of Rac1, req 94.5 0.8 1.7E-05 43.7 12.3 152 137-295 86-241 (713)
149 KOG1240 Protein kinase contain 94.4 4.8 0.0001 42.2 18.1 252 20-296 437-725 (1431)
150 KOG1060 Vesicle coat complex A 94.2 1.4 3E-05 43.9 13.4 166 55-253 294-460 (968)
151 PF05004 IFRD: Interferon-rela 94.1 4.4 9.4E-05 36.5 18.9 185 104-297 55-258 (309)
152 KOG0211 Protein phosphatase 2A 94.0 3.1 6.7E-05 42.0 15.9 265 8-297 357-626 (759)
153 PF11698 V-ATPase_H_C: V-ATPas 93.8 0.12 2.6E-06 39.3 4.5 73 133-207 42-115 (119)
154 COG5096 Vesicle coat complex, 93.6 0.34 7.4E-06 48.4 8.5 103 6-120 92-194 (757)
155 KOG2274 Predicted importin 9 [ 93.5 10 0.00022 38.7 18.9 223 17-252 461-690 (1005)
156 PF13764 E3_UbLigase_R4: E3 ub 93.4 10 0.00022 38.7 18.9 251 43-298 112-408 (802)
157 KOG1240 Protein kinase contain 93.2 1.8 4E-05 45.1 12.9 231 6-253 462-727 (1431)
158 KOG2611 Neurochondrin/leucine- 93.2 7.9 0.00017 36.7 18.3 130 93-229 16-162 (698)
159 COG5209 RCD1 Uncharacterized p 93.1 0.48 1E-05 40.1 7.3 147 21-173 115-276 (315)
160 KOG1058 Vesicle coat complex C 93.0 8.7 0.00019 38.4 16.6 129 19-166 219-347 (948)
161 KOG1788 Uncharacterized conser 93.0 6.3 0.00014 41.0 15.9 262 26-298 662-984 (2799)
162 COG5209 RCD1 Uncharacterized p 92.9 0.46 9.9E-06 40.2 7.0 98 196-296 118-218 (315)
163 PF12031 DUF3518: Domain of un 92.9 0.38 8.3E-06 41.1 6.6 86 194-283 140-232 (257)
164 PF06025 DUF913: Domain of Unk 92.8 5.6 0.00012 36.9 14.7 193 25-230 3-207 (379)
165 KOG1058 Vesicle coat complex C 92.8 5.2 0.00011 39.9 14.7 58 13-77 106-163 (948)
166 KOG0414 Chromosome condensatio 92.7 1.5 3.2E-05 45.6 11.4 144 135-299 920-1067(1251)
167 PF06371 Drf_GBD: Diaphanous G 92.6 1.3 2.9E-05 36.3 9.7 109 6-120 66-186 (187)
168 PF11701 UNC45-central: Myosin 92.3 0.36 7.8E-06 38.9 5.6 147 7-162 4-156 (157)
169 KOG1943 Beta-tubulin folding c 92.3 14 0.00031 38.3 17.6 228 47-289 340-604 (1133)
170 PF06371 Drf_GBD: Diaphanous G 92.2 0.68 1.5E-05 38.1 7.4 108 136-250 68-186 (187)
171 PF11865 DUF3385: Domain of un 92.2 4.1 8.8E-05 32.9 11.6 144 134-292 10-153 (160)
172 PF11701 UNC45-central: Myosin 91.5 0.81 1.8E-05 36.8 6.8 100 16-118 53-156 (157)
173 KOG4653 Uncharacterized conser 91.4 5.9 0.00013 40.0 13.6 175 105-297 740-919 (982)
174 KOG0915 Uncharacterized conser 91.0 8.4 0.00018 41.4 14.8 107 177-296 998-1110(1702)
175 PF06025 DUF913: Domain of Unk 90.7 5.8 0.00013 36.8 12.5 80 20-99 123-207 (379)
176 KOG1967 DNA repair/transcripti 90.6 1.3 2.7E-05 44.9 8.3 148 47-201 866-1018(1030)
177 KOG2274 Predicted importin 9 [ 90.6 22 0.00048 36.3 19.9 180 18-206 503-688 (1005)
178 PF11707 Npa1: Ribosome 60S bi 90.4 14 0.00029 33.7 16.0 155 7-168 57-240 (330)
179 COG5215 KAP95 Karyopherin (imp 90.3 19 0.00041 35.1 19.2 265 17-296 52-357 (858)
180 COG5181 HSH155 U2 snRNP splice 90.0 4.3 9.3E-05 39.6 10.9 181 5-207 687-870 (975)
181 KOG4535 HEAT and armadillo rep 90.0 12 0.00026 35.6 13.5 233 22-279 407-658 (728)
182 KOG4653 Uncharacterized conser 89.9 15 0.00032 37.4 14.8 190 5-206 726-917 (982)
183 PF12031 DUF3518: Domain of un 89.9 1.5 3.3E-05 37.5 7.2 123 63-187 81-226 (257)
184 PF10363 DUF2435: Protein of u 89.9 0.79 1.7E-05 33.3 4.8 72 5-78 2-73 (92)
185 PF05918 API5: Apoptosis inhib 89.7 8.4 0.00018 37.5 12.9 131 10-161 27-158 (556)
186 KOG1248 Uncharacterized conser 89.2 32 0.0007 36.2 17.6 225 60-299 666-902 (1176)
187 cd03569 VHS_Hrs_Vps27p VHS dom 89.1 2.3 5.1E-05 33.5 7.4 72 5-76 40-113 (142)
188 PF12460 MMS19_C: RNAPII trans 89.0 3.6 7.9E-05 38.7 9.9 112 6-123 271-396 (415)
189 KOG1943 Beta-tubulin folding c 88.6 6.8 0.00015 40.5 11.7 150 134-296 341-500 (1133)
190 KOG1060 Vesicle coat complex A 88.4 31 0.00066 34.9 18.7 206 8-250 37-245 (968)
191 KOG0301 Phospholipase A2-activ 88.0 21 0.00046 35.2 14.1 173 16-196 554-735 (745)
192 PF08324 PUL: PUL domain; Int 87.8 5.1 0.00011 35.1 9.6 178 109-290 80-268 (268)
193 PF12460 MMS19_C: RNAPII trans 87.7 25 0.00053 33.1 14.7 110 179-298 273-396 (415)
194 PF14668 RICTOR_V: Rapamycin-i 87.7 2.2 4.7E-05 29.5 5.6 67 109-177 4-70 (73)
195 KOG0414 Chromosome condensatio 87.4 4.3 9.2E-05 42.3 9.6 138 9-165 922-1064(1251)
196 cd03561 VHS VHS domain family; 86.8 5.2 0.00011 31.1 8.1 72 5-76 36-111 (133)
197 PF12530 DUF3730: Protein of u 86.3 20 0.00044 30.7 16.4 157 9-186 3-168 (234)
198 KOG0915 Uncharacterized conser 85.9 58 0.0012 35.6 18.3 149 7-166 999-1161(1702)
199 cd03568 VHS_STAM VHS domain fa 85.7 5 0.00011 31.8 7.5 73 4-76 35-109 (144)
200 PF08167 RIX1: rRNA processing 85.5 4.8 0.0001 32.6 7.5 109 89-206 26-142 (165)
201 KOG4535 HEAT and armadillo rep 85.3 17 0.00037 34.6 11.6 269 21-300 270-563 (728)
202 KOG0567 HEAT repeat-containing 85.3 7.9 0.00017 33.8 8.8 57 49-118 219-277 (289)
203 PF11707 Npa1: Ribosome 60S bi 85.2 29 0.00064 31.5 13.7 157 50-209 58-239 (330)
204 KOG1248 Uncharacterized conser 85.0 14 0.00029 38.8 11.8 181 16-206 707-897 (1176)
205 cd03567 VHS_GGA VHS domain fam 84.8 6.4 0.00014 30.9 7.6 72 5-76 37-115 (139)
206 smart00288 VHS Domain present 84.7 5.9 0.00013 30.8 7.4 72 5-76 36-110 (133)
207 cd03572 ENTH_epsin_related ENT 84.5 6.4 0.00014 30.2 7.3 72 222-297 41-120 (122)
208 KOG2032 Uncharacterized conser 84.5 38 0.00083 32.3 18.2 154 46-207 252-415 (533)
209 KOG1820 Microtubule-associated 84.3 37 0.00079 34.9 14.4 178 10-205 257-441 (815)
210 KOG3665 ZYG-1-like serine/thre 84.2 17 0.00036 36.8 12.0 160 22-186 488-676 (699)
211 KOG3665 ZYG-1-like serine/thre 84.1 41 0.00089 34.0 14.7 53 159-211 494-547 (699)
212 cd03568 VHS_STAM VHS domain fa 83.6 9.7 0.00021 30.1 8.2 71 221-296 39-110 (144)
213 KOG1020 Sister chromatid cohes 83.3 31 0.00066 37.5 13.5 127 111-255 796-925 (1692)
214 PF10363 DUF2435: Protein of u 83.1 7.3 0.00016 28.2 6.8 69 181-255 7-76 (92)
215 KOG1967 DNA repair/transcripti 83.0 7.6 0.00016 39.6 8.8 148 7-159 868-1018(1030)
216 KOG1991 Nuclear transport rece 82.7 64 0.0014 33.5 18.8 259 19-294 431-709 (1010)
217 KOG1020 Sister chromatid cohes 81.7 35 0.00076 37.1 13.2 105 6-121 816-921 (1692)
218 cd03567 VHS_GGA VHS domain fam 81.0 13 0.00028 29.2 8.0 72 220-296 39-116 (139)
219 cd03569 VHS_Hrs_Vps27p VHS dom 80.9 12 0.00027 29.4 7.9 72 220-296 42-114 (142)
220 cd03561 VHS VHS domain family; 80.8 14 0.0003 28.7 8.1 71 221-296 39-112 (133)
221 PF08167 RIX1: rRNA processing 80.5 12 0.00026 30.3 7.9 110 49-165 26-143 (165)
222 KOG0567 HEAT repeat-containing 80.0 41 0.00089 29.5 18.0 237 7-295 4-279 (289)
223 PF05918 API5: Apoptosis inhib 79.6 15 0.00032 35.8 9.4 64 5-73 58-121 (556)
224 KOG2025 Chromosome condensatio 78.8 17 0.00037 36.2 9.5 109 7-125 86-194 (892)
225 KOG2025 Chromosome condensatio 78.5 20 0.00044 35.7 9.9 101 176-288 84-185 (892)
226 PF11864 DUF3384: Domain of un 78.4 65 0.0014 30.8 19.1 255 19-291 42-325 (464)
227 PF14726 RTTN_N: Rotatin, an a 77.6 13 0.00029 27.2 6.6 92 21-116 2-95 (98)
228 KOG1078 Vesicle coat complex C 77.2 88 0.0019 31.8 20.2 75 48-129 241-319 (865)
229 KOG1243 Protein kinase [Genera 77.0 9.1 0.0002 37.8 7.1 183 6-204 330-512 (690)
230 KOG4464 Signaling protein RIC- 76.9 65 0.0014 30.2 14.4 104 20-123 111-233 (532)
231 PF14726 RTTN_N: Rotatin, an a 76.5 19 0.00042 26.4 7.2 68 4-72 28-95 (98)
232 KOG0211 Protein phosphatase 2A 76.2 96 0.0021 31.7 15.6 259 8-294 84-343 (759)
233 PF00790 VHS: VHS domain; Int 75.5 9.6 0.00021 29.9 5.9 71 5-75 41-116 (140)
234 PF12530 DUF3730: Protein of u 74.9 53 0.0012 28.2 16.7 140 50-206 2-150 (234)
235 KOG2933 Uncharacterized conser 74.8 36 0.00078 30.5 9.6 139 134-291 88-229 (334)
236 smart00638 LPD_N Lipoprotein N 74.7 32 0.00069 33.8 10.6 141 4-162 391-542 (574)
237 PF07814 WAPL: Wings apart-lik 74.4 24 0.00052 32.6 9.0 237 5-254 20-302 (361)
238 smart00288 VHS Domain present 73.9 26 0.00056 27.2 7.9 71 221-296 39-111 (133)
239 PF00790 VHS: VHS domain; Int 73.4 25 0.00054 27.5 7.8 71 221-296 44-118 (140)
240 KOG2956 CLIP-associating prote 73.2 87 0.0019 29.8 15.8 146 134-294 329-475 (516)
241 KOG2062 26S proteasome regulat 71.8 35 0.00077 34.3 9.6 34 108-144 640-675 (929)
242 PF07923 N1221: N1221-like pro 71.3 11 0.00023 33.8 5.8 56 3-58 57-126 (293)
243 PF01347 Vitellogenin_N: Lipop 70.6 21 0.00045 35.4 8.3 141 4-162 429-586 (618)
244 COG5098 Chromosome condensatio 70.4 30 0.00065 34.6 8.8 112 7-123 300-417 (1128)
245 KOG2933 Uncharacterized conser 70.1 47 0.001 29.8 9.2 146 4-162 86-231 (334)
246 PF14500 MMS19_N: Dos2-interac 69.7 78 0.0017 27.8 15.0 229 52-299 3-241 (262)
247 KOG1832 HIV-1 Vpr-binding prot 69.5 14 0.0003 37.8 6.4 105 18-131 674-783 (1516)
248 KOG0301 Phospholipase A2-activ 69.1 1.3E+02 0.0028 30.1 13.2 167 54-231 550-728 (745)
249 PF12830 Nipped-B_C: Sister ch 68.6 66 0.0014 26.5 11.7 124 50-187 10-140 (187)
250 KOG1566 Conserved protein Mo25 68.4 91 0.002 28.1 14.6 197 5-209 78-288 (342)
251 COG5218 YCG1 Chromosome conden 67.5 83 0.0018 31.0 10.9 101 176-288 90-191 (885)
252 KOG1820 Microtubule-associated 66.7 1.6E+02 0.0035 30.4 14.4 144 133-291 293-438 (815)
253 KOG2137 Protein kinase [Signal 65.9 63 0.0014 32.3 10.0 133 45-187 386-518 (700)
254 PF14666 RICTOR_M: Rapamycin-i 65.2 89 0.0019 26.8 13.1 129 150-295 78-224 (226)
255 COG5098 Chromosome condensatio 65.1 66 0.0014 32.3 9.9 153 134-294 240-413 (1128)
256 KOG1788 Uncharacterized conser 64.9 2E+02 0.0044 30.8 15.1 195 6-207 720-982 (2799)
257 KOG2032 Uncharacterized conser 63.9 51 0.0011 31.5 8.7 142 149-296 271-416 (533)
258 PF13251 DUF4042: Domain of un 63.4 84 0.0018 25.9 10.8 136 22-166 2-175 (182)
259 PF12830 Nipped-B_C: Sister ch 62.9 37 0.00081 28.0 7.1 69 5-78 7-75 (187)
260 PF04388 Hamartin: Hamartin pr 62.2 1.2E+02 0.0026 30.6 11.6 135 47-205 3-138 (668)
261 PF08216 CTNNBL: Catenin-beta- 62.1 15 0.00033 27.4 4.1 40 153-193 63-102 (108)
262 PF07814 WAPL: Wings apart-lik 61.7 38 0.00081 31.3 7.6 93 136-229 23-116 (361)
263 COG5218 YCG1 Chromosome conden 60.9 66 0.0014 31.6 9.0 106 7-125 92-200 (885)
264 PF08216 CTNNBL: Catenin-beta- 60.7 9.8 0.00021 28.4 2.9 40 24-64 64-103 (108)
265 KOG2137 Protein kinase [Signal 59.0 1.5E+02 0.0031 29.9 11.2 129 89-231 390-520 (700)
266 PF08506 Cse1: Cse1; InterPro 57.7 1.4E+02 0.0031 27.6 10.6 127 152-290 227-369 (370)
267 PF14225 MOR2-PAG1_C: Cell mor 57.4 1.3E+02 0.0029 26.3 15.0 184 11-205 12-252 (262)
268 PRK14707 hypothetical protein; 57.0 3.7E+02 0.008 31.2 21.9 236 7-250 374-613 (2710)
269 KOG2199 Signal transducing ada 56.1 85 0.0018 29.2 8.4 72 220-296 46-118 (462)
270 KOG1848 Uncharacterized conser 56.0 2E+02 0.0043 31.5 12.0 178 104-289 854-1038(1610)
271 PF01347 Vitellogenin_N: Lipop 55.1 57 0.0012 32.3 8.2 124 5-158 485-615 (618)
272 KOG2149 Uncharacterized conser 55.1 1E+02 0.0022 28.7 8.9 113 4-121 56-170 (393)
273 PF11865 DUF3385: Domain of un 54.4 1.1E+02 0.0024 24.5 9.3 142 8-163 12-155 (160)
274 PF06685 DUF1186: Protein of u 54.0 1.5E+02 0.0032 25.8 9.5 111 47-174 30-152 (249)
275 cd00197 VHS_ENTH_ANTH VHS, ENT 51.6 98 0.0021 23.0 8.3 70 221-295 39-114 (115)
276 KOG1243 Protein kinase [Genera 49.2 1.5E+02 0.0032 29.8 9.5 147 45-205 327-474 (690)
277 PF03130 HEAT_PBS: PBS lyase H 48.5 17 0.00036 19.5 1.8 26 64-98 1-26 (27)
278 COG5116 RPN2 26S proteasome re 48.0 1.7E+02 0.0036 28.9 9.3 146 134-301 551-697 (926)
279 cd03565 VHS_Tom1 VHS domain fa 47.6 1.4E+02 0.0029 23.5 8.4 72 221-296 40-115 (141)
280 PF14500 MMS19_N: Dos2-interac 47.6 1.9E+02 0.0042 25.3 17.5 221 10-254 3-240 (262)
281 PF10274 ParcG: Parkin co-regu 47.5 84 0.0018 26.0 6.6 70 7-76 39-108 (183)
282 cd00197 VHS_ENTH_ANTH VHS, ENT 47.4 1.2E+02 0.0025 22.6 7.5 70 5-74 36-112 (115)
283 cd03565 VHS_Tom1 VHS domain fa 46.7 1.4E+02 0.003 23.4 8.1 76 177-252 38-116 (141)
284 PF07923 N1221: N1221-like pro 44.6 37 0.00079 30.3 4.5 53 133-187 59-126 (293)
285 PLN03205 ATR interacting prote 43.7 1.1E+02 0.0025 28.5 7.3 112 135-250 324-445 (652)
286 COG5116 RPN2 26S proteasome re 43.4 1.8E+02 0.0038 28.7 8.8 60 12-79 522-583 (926)
287 PF14663 RasGEF_N_2: Rapamycin 43.2 40 0.00087 25.4 3.9 40 178-218 9-48 (115)
288 PF14663 RasGEF_N_2: Rapamycin 43.0 89 0.0019 23.5 5.8 42 5-47 7-48 (115)
289 PF04064 DUF384: Domain of unk 42.0 50 0.0011 21.6 3.6 48 159-206 1-48 (58)
290 KOG1991 Nuclear transport rece 41.4 4.5E+02 0.0097 27.7 17.2 192 8-206 464-670 (1010)
291 cd03572 ENTH_epsin_related ENT 41.1 1E+02 0.0022 23.6 5.8 67 7-73 39-115 (122)
292 PF04499 SAPS: SIT4 phosphatas 39.4 2.4E+02 0.0053 27.1 9.3 80 214-297 57-150 (475)
293 PF13251 DUF4042: Domain of un 39.4 2.2E+02 0.0047 23.5 9.7 116 176-296 38-174 (182)
294 PF06012 DUF908: Domain of Unk 39.2 1.4E+02 0.0031 27.1 7.5 63 153-215 239-305 (329)
295 PF01417 ENTH: ENTH domain; I 38.1 1.8E+02 0.0038 22.0 10.2 99 193-297 18-122 (125)
296 KOG1949 Uncharacterized conser 37.9 3.3E+02 0.0071 27.7 9.8 143 9-162 177-328 (1005)
297 PF08389 Xpo1: Exportin 1-like 37.0 1.2E+02 0.0026 23.1 6.0 102 6-116 26-148 (148)
298 KOG1832 HIV-1 Vpr-binding prot 36.1 1.7E+02 0.0036 30.6 7.6 141 21-177 624-785 (1516)
299 TIGR03504 FimV_Cterm FimV C-te 35.1 58 0.0013 19.9 2.9 29 266-294 16-44 (44)
300 PF04499 SAPS: SIT4 phosphatas 34.3 3.5E+02 0.0076 26.1 9.5 76 174-251 59-148 (475)
301 PRK14707 hypothetical protein; 33.7 8.5E+02 0.018 28.6 19.8 268 17-299 217-491 (2710)
302 PF10521 DUF2454: Protein of u 33.6 1.2E+02 0.0026 26.8 6.0 33 48-80 119-151 (282)
303 PF06012 DUF908: Domain of Unk 32.9 2.3E+02 0.005 25.7 7.8 58 196-253 240-299 (329)
304 cd08050 TAF6 TATA Binding Prot 32.4 3.9E+02 0.0085 24.4 11.2 112 50-163 212-338 (343)
305 PF04388 Hamartin: Hamartin pr 32.3 5.5E+02 0.012 26.0 14.3 137 5-165 3-140 (668)
306 PF12783 Sec7_N: Guanine nucle 31.6 1.4E+02 0.0031 23.8 5.7 83 85-173 70-154 (168)
307 PF01365 RYDR_ITPR: RIH domain 31.5 1E+02 0.0022 25.7 5.0 93 107-208 76-170 (207)
308 KOG4231 Intracellular membrane 31.1 44 0.00095 32.1 2.8 71 221-296 329-399 (763)
309 KOG4464 Signaling protein RIC- 30.5 4.8E+02 0.01 24.7 13.1 138 90-231 47-199 (532)
310 smart00567 EZ_HEAT E-Z type HE 30.2 76 0.0017 17.0 2.7 27 63-98 2-28 (30)
311 PF01465 GRIP: GRIP domain; I 30.0 1.4E+02 0.003 18.4 4.1 34 10-43 11-44 (46)
312 PF08389 Xpo1: Exportin 1-like 29.4 81 0.0018 24.1 3.8 49 20-72 100-148 (148)
313 PF04064 DUF384: Domain of unk 29.3 1.7E+02 0.0036 19.2 5.7 47 202-250 2-48 (58)
314 PF12765 Cohesin_HEAT: HEAT re 29.0 44 0.00094 20.1 1.7 25 48-72 18-42 (42)
315 KOG0392 SNF2 family DNA-depend 28.7 8.2E+02 0.018 26.9 12.3 231 8-250 79-324 (1549)
316 KOG0413 Uncharacterized conser 28.5 4.6E+02 0.01 27.9 9.3 132 151-301 946-1078(1529)
317 PF10521 DUF2454: Protein of u 28.3 4.1E+02 0.009 23.4 11.3 52 133-186 118-171 (282)
318 KOG2062 26S proteasome regulat 27.4 6.9E+02 0.015 25.7 17.8 147 134-304 554-705 (929)
319 cd00872 PI3Ka_I Phosphoinositi 25.3 3.7E+02 0.0081 21.9 9.6 77 5-99 38-116 (171)
320 PF11791 Aconitase_B_N: Aconit 25.0 2.9E+02 0.0064 22.0 6.0 73 91-165 40-123 (154)
321 KOG4231 Intracellular membrane 24.5 1.9E+02 0.0042 28.0 5.7 57 59-119 339-397 (763)
322 KOG2199 Signal transducing ada 24.1 3E+02 0.0064 25.8 6.6 75 3-77 42-118 (462)
323 PF12726 SEN1_N: SEN1 N termin 23.8 4.2E+02 0.009 27.1 8.6 106 10-121 445-553 (727)
324 KOG4524 Uncharacterized conser 23.5 2.1E+02 0.0045 30.0 6.1 89 7-98 804-899 (1014)
325 KOG1087 Cytosolic sorting prot 23.5 2.5E+02 0.0055 27.0 6.4 75 5-79 37-116 (470)
326 KOG1566 Conserved protein Mo25 23.4 5.7E+02 0.012 23.3 17.4 200 84-296 75-286 (342)
327 PF07539 DRIM: Down-regulated 23.3 1.2E+02 0.0027 23.7 3.7 27 9-35 20-46 (141)
328 KOG0413 Uncharacterized conser 22.4 1.6E+02 0.0034 31.0 5.0 105 5-120 967-1072(1529)
329 PF12331 DUF3636: Protein of u 21.4 1.8E+02 0.0039 23.2 4.2 37 194-230 110-147 (149)
330 COG5330 Uncharacterized protei 20.8 4.9E+02 0.011 24.1 7.4 73 6-80 7-79 (364)
331 cd00870 PI3Ka_III Phosphoinosi 20.6 4.6E+02 0.01 21.2 6.8 75 7-99 47-123 (166)
332 PF14631 FancD2: Fanconi anaem 20.0 4.6E+02 0.01 29.3 8.3 110 47-166 430-543 (1426)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=262.12 Aligned_cols=287 Identities=20% Similarity=0.203 Sum_probs=245.2
Q ss_pred hhhhhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 2 EVKRRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
|.+...+..+|+.|+++ +++.|..|+..|+.+++.++++|..+.+ .|+||.|+.+|+++++.+++.|+.+|.+++.+
T Consensus 9 ~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~ 88 (2102)
T PLN03200 9 DGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE 88 (2102)
T ss_pred cchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 45688999999999977 8899999999999999999999999997 99999999999999999999999999999998
Q ss_pred cc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC---CCchhhhhhccccHHHHHHHhhccCC-ChHHH
Q 021242 79 SR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV---DSYRPIIGAKRDIIHSLIEIIKTRNS-PLRSV 153 (315)
Q Consensus 79 ~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~ 153 (315)
++ +..+...|++++|+.+|++ ++++.++.|+++|++|+.. +.++..++...|+||.|+.++++.+. +..++
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~s----Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKS----GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHC----CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 76 4445589999999999997 6899999999999999975 44454444335669999999994211 22355
Q ss_pred HHHHHHHHHhccCCCcHH-HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 154 KDALKALFGIALYPLNRY-QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~-~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
..++.+|.|||.+++++. .+++.|++|.++.+|. ++++..++.|+.+|.+++. +++++..+++.|+||.|+++|+.+
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs-S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg 243 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS-SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC
Confidence 678899999999999885 5689999999999996 5678889999999988876 478999999999999999999865
Q ss_pred CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH---------HHHHHHHHHHHHHhhCC
Q 021242 232 TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA---------KGKTKAVALLKILVDDG 298 (315)
Q Consensus 232 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~---------~~k~~A~~~L~~l~~~~ 298 (315)
.+..+|++|+++|.+||..+ ++.+..+++ .|++|.|+.++.+.+. ..+++|.|.|.++.++.
T Consensus 244 --~~~~VRE~AA~AL~nLAs~s-~e~r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 244 --NEVSVRAEAAGALEALSSQS-KEAKQAIAD--AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred --CChHHHHHHHHHHHHHhcCC-HHHHHHHHH--CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 35689999999999999754 578888888 9999999999986553 45999999999988753
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=261.43 Aligned_cols=282 Identities=23% Similarity=0.260 Sum_probs=243.2
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.++.+|.|+++|++++++.|..|+++|+++++.+++++..+++.|+||+|+++|++++.++++.|+|+|.|++.+++ +
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 45689999999999999999999999999999888899999999999999999999999999999999999999764 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-----------------------------------
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR----------------------------------- 126 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~----------------------------------- 126 (315)
.++.+.|++++|+++|++ ++++.+..++++|.+|+...+..
T Consensus 524 ~iV~~aGAIppLV~LL~s----gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKN----GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 456688999999999997 67899999999999997422211
Q ss_pred --hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHH
Q 021242 127 --PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 127 --~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
.......|.++.|+.+++ ++++.+++.|+++|.+++. +++.+..++..|++|+++.+|. ..+..++..++++|.
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~--sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~ 676 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLS--SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARALA 676 (2102)
T ss_pred HHHHhhhccccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHH
Confidence 000111345999999999 6789999999999999998 4567888999999999999996 567788999999999
Q ss_pred HHhc--ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 204 QIAG--CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 204 ~L~~--~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
+|+. .+.++..+++.|+|+.|+++++.. +..+++.++.+|.+++..+ +.+.++.. .|+++.|+.+++++++
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~---d~~v~e~Al~ALanLl~~~--e~~~ei~~--~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSS---SIEVAEQAVCALANLLSDP--EVAAEALA--EDIILPLTRVLREGTL 749 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCC---ChHHHHHHHHHHHHHHcCc--hHHHHHHh--cCcHHHHHHHHHhCCh
Confidence 9985 455677788999999999999975 8899999999999999754 46678887 8999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 021242 282 KGKTKAVALLKILVDDGN 299 (315)
Q Consensus 282 ~~k~~A~~~L~~l~~~~~ 299 (315)
+.|++|+++|..|.....
T Consensus 750 ~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 750 EGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999887765443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=232.25 Aligned_cols=283 Identities=20% Similarity=0.224 Sum_probs=245.9
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.||.+|+.|+.. +|.+|..|+|+|.+++..+.+.-+.++++|++|.++.++.+++..+++.|+|+|.|++.+.. +.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 7899999999855 58999999999999999988889999999999999999999999999999999999999875 67
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
++.+.|++++|+.++..+ .......+++|+|.||+........+..-..++|.|..++. ..|+++...|+|+|.+
T Consensus 189 ~vl~~g~l~pLl~~l~~~---~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~--~~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKS---DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH--STDEEVLTDACWALSY 263 (514)
T ss_pred HHHhhcchHHHHHHhccc---cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 788999999999999862 23456779999999999866544444443466999999999 5699999999999999
Q ss_pred hccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 163 IALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 163 Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
|+..+ +.-..+++.|++|.|+++|. +++..++..|++++.|+.. ++...+.+++.|+++.|..++... ....+++
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~-~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikk 340 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLG-HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKK 340 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHc-CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHH
Confidence 99855 45566778999999999996 5677788899999999965 677888899999999999999843 2556899
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCC
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
.|||++.||+. +..+..+.++. +|.+|.|+.++++++.++|+.|+|++.++..+++
T Consensus 341 EAcW~iSNItA-G~~~qiqaVid--a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 341 EACWTISNITA-GNQEQIQAVID--ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHHhhc-CCHHHHHHHHH--cccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99999999997 55567789998 9999999999999999999999999999977665
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-29 Score=229.04 Aligned_cols=279 Identities=20% Similarity=0.230 Sum_probs=241.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCH-HHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH-AFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~la~~~~--~ 81 (315)
-+.+|.++++|.+++.+++..|+|+|.+++++++..|..+.+.|++++|+.++...++ ...+.++|+|.|+|.+.+ +
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 4678999999999999999999999999999999999999999999999999987776 688999999999999974 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..-.-...+|.|..++++ .++++...|+|+|++|+- .++.-..+.+. |++|.|+++|. +.++.++..|++++
T Consensus 231 ~~~~v~~iLp~L~~ll~~----~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~-gvv~~LV~lL~--~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHS----TDEEVLTDACWALSYLTDGSNEKIQMVIDA-GVVPRLVDLLG--HSSPKVVTPALRAI 303 (514)
T ss_pred cHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCChHHHHHHHHc-cchHHHHHHHc--CCCcccccHHHhhc
Confidence 443455689999999998 789999999999999994 44544555554 77999999999 45778889999999
Q ss_pred HHhccCCCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYPLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.|+....+. ...++..|++|.|..++..++...++..|+|+++|++. ..+..++++++|.+|.|+.+|+.+ +-++
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~---ef~~ 380 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA---EFDI 380 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---chHH
Confidence 999996655 46678999999999999755556688999999999965 688999999999999999999987 7889
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
|..|+|++.|++..+.++....+++ .|++++|++++.-.+.++...+-..|.++-
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~--~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVE--QGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHH--cCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 9999999999998887778899998 999999999996668888777777666653
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-28 Score=210.17 Aligned_cols=277 Identities=19% Similarity=0.244 Sum_probs=242.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i 84 (315)
+++.++.++=++.+..+|..+.++|.++.. +.++|+.++.+|++|.||.++++.|+++|.++..++.|++.+.. +++.
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 456778886677888999999999999984 58999999999999999999999999999999999999999875 5555
Q ss_pred hhcC--chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 85 STRG--LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~--~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+.+ .++.|++++++ +++.++..|.-+|++|+...++...+.+.|+ +|.++.+++++ ..........++.|
T Consensus 246 aqaep~lv~~Lv~Lmd~----~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~-lP~lv~Llqs~--~~plilasVaCIrn 318 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDD----GSDKVKCQAGLALRNLASDTEYQREIVEAGS-LPLLVELLQSP--MGPLILASVACIRN 318 (550)
T ss_pred HhcccchHHHHHHHHhC----CChHHHHHHHHHHhhhcccchhhhHHHhcCC-chHHHHHHhCc--chhHHHHHHHHHhh
Confidence 5655 99999999997 7889999999999999998888888888766 99999999953 44455666778899
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
++.+|-|-..++++|.+.+|+++|.-..+.+++-.|..+|+||+. .+.++..|.+.|+||.+..++.++ .-.+|+.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~---pvsvqse 395 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG---PVSVQSE 395 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC---ChhHHHH
Confidence 999999999999999999999999633455688889999999987 688999999999999999999987 7788988
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
...++..|+.... .+..+.. .|.++.|+.+..+.+.+++.+|+..|-+|+.+
T Consensus 396 isac~a~Lal~d~--~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 396 ISACIAQLALNDN--DKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHhccc--cHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 8888999986543 4467777 99999999999999999999999999999865
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.1e-28 Score=208.66 Aligned_cols=277 Identities=17% Similarity=0.204 Sum_probs=243.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i 84 (315)
..+..|+..+.....++|+.++++|.+++.. +++|..+...|++.++.++-++.+..+|.++..+|.|++...+ ++..
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 3455566666666669999999999999988 6899999999999999998899999999999999999998765 5566
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhcc-ccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKR-DIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+.+|++|.|++++++ ++++++..++.+|.+++.+.-+|..+.+.+ -++|.||++.. +++++++-.|..+|.||
T Consensus 205 V~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNL 278 (550)
T ss_pred hccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh--CCChHHHHHHHHHHhhh
Confidence 799999999999998 789999999999999999888888888753 38999999999 67999999999999999
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
+++.+-...++++|++|.++++|+ ++.-+........++|++.+|-+-.-|.+.|++..||++|+.+ +++++|-+|+
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llq-s~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAv 355 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQ-SPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAV 355 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHh-CcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC--CchhhhhhHH
Confidence 999999999999999999999996 5666777777888999999998888899999999999999987 4778999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+||+|+.++ +..+..+.+ .|++|+|..++.+++-.++..-...+..|+
T Consensus 356 stLrnLAass-e~n~~~i~e--sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 356 STLRNLAASS-EHNVSVIRE--SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred HHHHHHhhhh-hhhhHHHhh--cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999998744 456677776 999999999999999888888777766664
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.5e-27 Score=204.35 Aligned_cols=277 Identities=17% Similarity=0.159 Sum_probs=233.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCH--HHHHHHHHHHHhcCcccc--
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH--AFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~la~~~~-- 80 (315)
-+++|.++++|.+++.+++.+++|+|.+++++++..|..+.+.|++++++.++.++.+ +..+++.|.|.||+.+..
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 4689999999999999999999999999999999999999999999999999987654 788999999999999863
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+.+-.-...+|.|.+++.+ .++++...|+|+|.+|+-.+ +.-..+.+ .|..+.|+.+|. +.+..++..|++.
T Consensus 236 P~w~~isqalpiL~KLiys----~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs--~~sa~iqtPalR~ 308 (526)
T COG5064 236 PDWSNISQALPILAKLIYS----RDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLS--HESAKIQTPALRS 308 (526)
T ss_pred CchHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhc--CccccccCHHHHh
Confidence 3332234479999999997 68899999999999999654 33444445 477889999999 5688899999999
Q ss_pred HHHhccCCC-cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPL-NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~-~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
+.|+....+ ....++++|+++.+..+|. ++...++..+||+++|++. +.+..++++++.-+|.|+++|... +-.
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs-~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a---e~k 384 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA---EYK 384 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhc-ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH---HHH
Confidence 999999554 4566789999999999995 5667899999999999954 788899999999999999999975 778
Q ss_pred HHHHHHHHHHHHhccCC--HHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 238 VKENAVSALLNLVNFGG--ERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~--~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+|..|||++.|....+. ++..+.++. .|++.+|++++.-.+-++-+.+...+.++
T Consensus 385 ~kKEACWAisNatsgg~~~PD~iryLv~--qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 385 IKKEACWAISNATSGGLNRPDIIRYLVS--QGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HHHHHHHHHHhhhccccCCchHHHHHHH--ccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 89999999999886543 356688887 99999999999987666666666555444
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=3e-27 Score=203.90 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=235.8
Q ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+-+|++|++|.+ ...-.+.+|+|+|-+++..+....+.+++.|++|.++.||.+.+.++++.++|+|.|++.+.. +.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 568999999954 455789999999999998877777788899999999999999999999999999999999875 67
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--Cc-hhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SY-RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
++.+.|++++++.++.+. ..+.....++.|+|.||+... .- -..+.. . +|.|.+++- ..|+++...|+|+
T Consensus 194 ~vL~~galeplL~ll~ss--~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--a-lpiL~KLiy--s~D~evlvDA~WA 266 (526)
T COG5064 194 YVLQCGALEPLLGLLLSS--AIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--A-LPILAKLIY--SRDPEVLVDACWA 266 (526)
T ss_pred HHHhcCchHHHHHHHHhc--cchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--H-HHHHHHHHh--hcCHHHHHHHHHH
Confidence 888999999999999852 134567789999999999633 32 333432 4 899999998 5689999999999
Q ss_pred HHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
+..|+..+..+ ..+++.|..+.|+++|. +++..++..++..+.|+-. ++..-+.+++.|+++.+-.+|.+. ...
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs-~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~---ke~ 342 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLS-HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP---KEN 342 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhc-CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh---hhh
Confidence 99999977555 56778999999999995 6778888999999999954 667778889999999999999875 568
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++..+||++.|++. +..+..+.+++ +..+|+|+.++++.+..+|+.|+|...+....
T Consensus 343 irKEaCWTiSNITA-Gnteqiqavid--~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 343 IRKEACWTISNITA-GNTEQIQAVID--ANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred hhhhhheeeccccc-CCHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999986 44567788988 99999999999999999999999987777543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=6e-21 Score=184.65 Aligned_cols=282 Identities=20% Similarity=0.234 Sum_probs=224.9
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-h
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~ 81 (315)
++++.|+.|+..|.+++.+....++..|.+++-. .+|+..|.+.|+||+|++++.+.+.+++..++++|+|||++++ +
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 4788999999999999999999999999999976 6799999999999999999999999999999999999999987 5
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
..+++.|++|.|+.+|.+ + ..+..+..+|.+||..+++|..+..+ +++|.+++++-. ..++.+...++..+.
T Consensus 366 ~~mV~~GlIPkLv~LL~d----~--~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~-~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKD----P--NFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLE-NSEEEVQLELIALLI 437 (708)
T ss_pred HHHHHCCCcHHHHHHhCC----C--chHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHh-CCCccccHHHHHHHH
Confidence 667799999999999986 2 34567899999999999999999886 569999998764 245566677889999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhc---------------C----------------------CCcchHHHHHHHHHH
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVN---------------G----------------------GRAGIVEDASAVIAQ 204 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~---------------~----------------------~~~~~~~~a~~~L~~ 204 (315)
|||.++.+...+.+.|+++.|++...+ + .+..+.-.++++|+|
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 999999888888887777766543211 1 123344457788888
Q ss_pred Hh--------------------------------------------cChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 205 IA--------------------------------------------GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 205 L~--------------------------------------------~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
|+ .++.....+.+.|.++.|+.+|+... .+.+.--
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kq-eDdE~Vl 596 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQ-EDDEIVL 596 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhC-chHHHHH
Confidence 65 23333444444455666666666542 3556666
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+.+.+++++..+. ..+..+++ +.++...|++++++.++.+|+.|..+|-.+.++
T Consensus 597 Qil~~f~~ll~h~--~tr~~ll~-~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 597 QILYVFYQLLFHE--ETREVLLK-ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHHHcCh--HHHHHHHh-ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 7788888988764 45567776 578999999999999999999999999888765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.86 E-value=2.7e-19 Score=173.21 Aligned_cols=263 Identities=16% Similarity=0.177 Sum_probs=219.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchH
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLD 91 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~ 91 (315)
.++...+ .....+...|.+++.+ +.+...+.+.|+|+.|+++|.+.+.+++..++.+|.+|+...+ +..|.+.|+++
T Consensus 257 ~l~~kQe-qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~ 334 (708)
T PF05804_consen 257 TLIRKQE-QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVE 334 (708)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 3334443 5566888889999965 7899999999999999999999999999999999999999976 44677999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH
Q 021242 92 AISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 92 ~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
.|.+++++ ++.+....+.++|+|||.+++.|..|.+. |++|.|+.+|. ++..+..|+..|++||.+++.|.
T Consensus 335 kL~kLl~s----~~~~l~~~aLrlL~NLSfd~~~R~~mV~~-GlIPkLv~LL~----d~~~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 335 KLLKLLPS----ENEDLVNVALRLLFNLSFDPELRSQMVSL-GLIPKLVELLK----DPNFREVALKILYNLSMDDEARS 405 (708)
T ss_pred HHHHHhcC----CCHHHHHHHHHHHHHhCcCHHHHHHHHHC-CCcHHHHHHhC----CCchHHHHHHHHHHhccCHhhHH
Confidence 99999997 67889999999999999999999999985 66999999998 23466789999999999999999
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
.+...+++|.+++++...++..+...+++++.|||.++.+.+.+++.+|++.|++..... .. .....++.|++.
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~---~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT---RD---PLLLKLIRNISQ 479 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc---cc---HHHHHHHHHHHh
Confidence 888889999999998765666666678999999999999999999888999999966542 21 224568999998
Q ss_pred cCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHHHHhhC
Q 021242 252 FGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 252 ~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~~l~~~ 297 (315)
++. .. +.+. .+.+..|+.++..+ ++...-.+..+|.+|.-+
T Consensus 480 h~~-~~-k~~f---~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 480 HDG-PL-KELF---VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred cCc-hH-HHHH---HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 764 23 3333 45888888888874 788999999999998754
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=6.9e-20 Score=173.96 Aligned_cols=292 Identities=17% Similarity=0.155 Sum_probs=228.6
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~ 82 (315)
..+|..+.||.+.++..|..|...|..++..+.+.|..+.+.|+|+.||.+|.+...++|.+|+++|.||.++.. ++
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999998852 56
Q ss_pred h-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCC------------C
Q 021242 83 L-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS------------P 149 (315)
Q Consensus 83 ~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~------------~ 149 (315)
+ +.+.++++.++++|+. ..+.++++..+++||||+..+..+..+... . ++.|..-+-.+.. +
T Consensus 313 lai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-a-l~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSNDALKMLIITS-A-LSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred hhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccchhHHHHHHHHH-H-HHHHHHhhcccccccCCCCccccccc
Confidence 5 6699999999999996 368899999999999999998888888763 5 7888764432211 2
Q ss_pred hHHHHHHHHHHHHhcc-CCCcHHHHHhh-CCcHHHHHHHhc-----CCCcchHHHHHHHHHHHhcChh------------
Q 021242 150 LRSVKDALKALFGIAL-YPLNRYQVIAL-GGVQPLFSLVVN-----GGRAGIVEDASAVIAQIAGCEE------------ 210 (315)
Q Consensus 150 ~~~~~~a~~aL~~Ls~-~~~~~~~i~~~-g~v~~L~~lL~~-----~~~~~~~~~a~~~L~~L~~~~~------------ 210 (315)
..+..+++.+|.|+++ ..+.|+++.+. |.|..|+-.++. +.+....+.|+++|+||+-.-+
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 4567899999999999 77888999874 999999888852 2456778999999999873111
Q ss_pred --------------------hHHHH--------------HhcC--------CHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 021242 211 --------------------SVDEF--------------KKCC--------GIGVLVDLLDLGTGSGHRVKENAVSALLN 248 (315)
Q Consensus 211 --------------------~~~~i--------------~~~~--------~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~ 248 (315)
..+.. ...| .|..-+.+|.. .....+.|.+.++|-|
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQN 545 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHhh
Confidence 00110 0001 12222333442 2367889999999999
Q ss_pred HhccCCH---HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccc
Q 021242 249 LVNFGGE---RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMT 305 (315)
Q Consensus 249 l~~~~~~---~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~ 305 (315)
++.+... ..+..++. ++-+++.|+++++.+++.+.+.++.+|++|+.+..-+..++
T Consensus 546 ltA~~~~~~~~~~~~v~~-kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig 604 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFR-KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG 604 (717)
T ss_pred hhccCCcchhHHHhhhhh-hccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh
Confidence 9975432 23455533 38899999999999999999999999999998755444444
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.3e-17 Score=144.28 Aligned_cols=276 Identities=15% Similarity=0.162 Sum_probs=227.8
Q ss_pred HHHHh--CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc-h-----
Q 021242 11 LVTKL--GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR-D----- 81 (315)
Q Consensus 11 Lv~~L--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~-~----- 81 (315)
++.+| +.++.++-...+..++.-+..++.||+.+.+.++.|.+...|... ...+.+.+.+++..+.++++ +
T Consensus 150 vv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ 229 (461)
T KOG4199|consen 150 VLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQ 229 (461)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecch
Confidence 44444 455678888888999988877899999999999999999777553 33577888999999888764 1
Q ss_pred -----hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH---HH
Q 021242 82 -----SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR---SV 153 (315)
Q Consensus 82 -----~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~---~~ 153 (315)
+.+.+.|++..|+..++-+ .+|++....+.+|..|+..++.+..+.+.|| +..|+.++.++ ++.. ..
T Consensus 230 ah~hAr~ia~e~~l~~L~Eal~A~---~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GG-l~tl~~~i~d~-n~~~~r~l~ 304 (461)
T KOG4199|consen 230 AHGHARTIAKEGILTALTEALQAG---IDPDSLVSLSTTLKALAVRDEICKSIAESGG-LDTLLRCIDDS-NEQGNRTLA 304 (461)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHcc---CCccHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHhhh-chhhHHHHH
Confidence 4556888999999999853 5678888999999999999999999999888 89999999864 3333 45
Q ss_pred HHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 154 KDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
+.++.+|..|+-+++++..|++.|+.+.++.++.++ .++.+.+.++.+++.||- .|+....+++.|+-...++.|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 789999999999999999999999999999998755 567788999999999986 688888888999888889999865
Q ss_pred CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 232 TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 232 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+....+|.++|+++.|+...+. ..+..++ ..|++.|+....+..+.....|...|+-|-=
T Consensus 385 -P~~a~vQrnac~~IRNiv~rs~-~~~~~~l---~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 385 -PVAAQVQRNACNMIRNIVVRSA-ENRTILL---ANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred -cHHHHHHHHHHHHHHHHHHhhh-hccchHH---hccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 4567899999999999998654 3334444 6789999999999999999999999987743
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.75 E-value=1.8e-16 Score=150.92 Aligned_cols=288 Identities=18% Similarity=0.183 Sum_probs=222.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch--hhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-h
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE--IRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~ 81 (315)
+.|+.||.+|.+.+.++|.+|+++|+||...+.. |+-.|.+.++||.++++|+. .|.++++....+||||+..+. +
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 6799999999999999999999999999866544 99999999999999999986 788999999999999999976 3
Q ss_pred hhhhhcCchHHHHHHHhcCCC----CC------CHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc----
Q 021242 82 SLMSTRGLLDAISHVLRHHST----ST------SSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR---- 146 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~----~~------~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~---- 146 (315)
..+ -..+++.|..-.-.+.+ ++ ..++..+++++|+|++. ..+.+..++++.|+|..|+..++..
T Consensus 355 ~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLI-ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHH-HHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 333 33456666554432211 01 13445689999999997 7788999999999999999888721
Q ss_pred CCChHHHHHHHHHHHHhc--------------------------------------------------------------
Q 021242 147 NSPLRSVKDALKALFGIA-------------------------------------------------------------- 164 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls-------------------------------------------------------------- 164 (315)
.-|.+.+++|...|+||+
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 223455566666666664
Q ss_pred ----------------------------------cC-----CCcHHHH-HhhCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 021242 165 ----------------------------------LY-----PLNRYQV-IALGGVQPLFSLVVNGGRAGIVEDASAVIAQ 204 (315)
Q Consensus 165 ----------------------------------~~-----~~~~~~i-~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~ 204 (315)
.. ...+..+ .+..++|+++++|+ .++..+...++++|+|
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~-~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR-NDDSDVVRSAAGALRN 592 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh-cCCchHHHHHHHHHhh
Confidence 10 0112222 34566788899996 5678888999999999
Q ss_pred HhcChhhHHHHHhcCCHHHHHHHhhcCCC---CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CC
Q 021242 205 IAGCEESVDEFKKCCGIGVLVDLLDLGTG---SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GS 280 (315)
Q Consensus 205 L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~ 280 (315)
|+.+..++..|- ..+++.|++.|..+.+ .+.+.--.+|.+|+++...+ -..++.+.+ .+++++|+.+..+ .+
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~-~~nAkdl~~--~~g~~kL~~I~~s~~S 668 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN-VLNAKDLLE--IKGIPKLRLISKSQHS 668 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh-HHHHHHHHh--ccChHHHHHHhcccCC
Confidence 999999999885 5689999999976522 34677778999999998644 457788887 9999999999887 58
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 021242 281 AKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 281 ~~~k~~A~~~L~~l~~~~~ 299 (315)
+++-+.|..+|..|-.+..
T Consensus 669 ~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 669 PKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999888765433
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.73 E-value=7.6e-16 Score=133.30 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=167.0
Q ss_pred hhhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
...++.|+.+|+. .+|.+|..++.++.+.+.. +.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.++..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 3578899999985 4799999999999999865 6899999999999999999999999999999999999999987554
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.++. .++.+++...+.+ -+.+.+..+.++|.+|+..++....+.. . ++.++.+|. .|+..++..++++|.||
T Consensus 90 ~Ik~-~i~~Vc~~~~s~~--lns~~Q~agLrlL~nLtv~~~~~~~l~~--~-i~~ll~LL~--~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 90 QIKM-YIPQVCEETVSSP--LNSEVQLAGLRLLTNLTVTNDYHHMLAN--Y-IPDLLSLLS--SGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHH-HHHHHHHHHhcCC--CCCHHHHHHHHHHHccCCCcchhhhHHh--h-HHHHHHHHH--cCChHHHHHHHHHHHHh
Confidence 3343 5777777665421 3457788999999999988888887753 4 899999999 67889999999999999
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
|.+|++...++.++++..++.++.++.+.++...++....|+..+
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997555667788899999999653
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=6.3e-16 Score=153.42 Aligned_cols=280 Identities=21% Similarity=0.258 Sum_probs=218.8
Q ss_pred hhHHHHHHHhCCC--------CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC---------CC---HHHH
Q 021242 6 RTVRSLVTKLGSV--------SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS---------SS---HAFQ 65 (315)
Q Consensus 6 ~~i~~Lv~~L~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---------~~---~~~~ 65 (315)
.|...+=.+|... +..-.+.|+.+|..+. .+++.|..+-+.|++..+-+||.- .+ ..++
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 4445555556433 2233347888888887 568999999999999999998842 12 3589
Q ss_pred HHHHHHHHhcCcccc-hh-hh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh-cCCCc-hhhhhhccccHHHHH
Q 021242 66 ENAAATLLNLSITSR-DS-LM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL-VVDSY-RPIIGAKRDIIHSLI 140 (315)
Q Consensus 66 ~~a~~~L~~la~~~~-~~-~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls-~~~~~-~~~i~~~~g~i~~Lv 140 (315)
.+|..+|-||.+++. ++ .+ ...|+++.++.-|.+ ...++.+..+.+|+||+ ..+.| +..+.+. |-+..|+
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa 443 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALA 443 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHH
Confidence 999999999999985 33 33 478999999999996 56789999999999999 55555 6677775 5478887
Q ss_pred HHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHh-hCCcHHHHHHHhcC---CCcchHHHHHHHHHHHh----cChhh
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIA-LGGVQPLFSLVVNG---GRAGIVEDASAVIAQIA----GCEES 211 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~-~g~v~~L~~lL~~~---~~~~~~~~a~~~L~~L~----~~~~~ 211 (315)
...-. +......+..+.+||||+. ..+|+..|.. -|++..|+.+|.-+ ....+.+.+-++|+|.+ .++..
T Consensus 444 ~~al~-~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 444 ACALR-NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHH-hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 64431 3344567889999999998 4689998876 69999999999411 12356888999999965 46788
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
|+.+.++.++..|++.|+.. +-.+--++|++||||+..+.. -.+.+.+ .|+++-|..|+++....+-.-+++.|
T Consensus 523 RQILR~~NCLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~-DQq~LwD--~gAv~mLrnLIhSKhkMIa~GSaaAL 596 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPE-DQQMLWD--DGAVPMLRNLIHSKHKMIAMGSAAAL 596 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHH-HHHHHHh--cccHHHHHHHHhhhhhhhhhhHHHHH
Confidence 88888899999999999975 778888999999999876543 3355555 99999999999999888888899999
Q ss_pred HHHhhCC
Q 021242 292 KILVDDG 298 (315)
Q Consensus 292 ~~l~~~~ 298 (315)
+||-..+
T Consensus 597 rNLln~R 603 (2195)
T KOG2122|consen 597 RNLLNFR 603 (2195)
T ss_pred HHHhcCC
Confidence 9998776
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.2e-14 Score=125.98 Aligned_cols=269 Identities=16% Similarity=0.190 Sum_probs=213.4
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcc-cc-hhhhhhcCchH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSIT-SR-DSLMSTRGLLD 91 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~-~~-~~~i~~~~~i~ 91 (315)
.+++.....+++.+|..+....| .+.++.++..++.+|.. .+.++-...+..+..-+.. +. ++.+.+.+..+
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 45677888899999999886655 47788889999999954 4566777788888665554 43 45666999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc---------cccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 92 AISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK---------RDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 92 ~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~---------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+.+.|..+ +..++.....++++-|...++.|..++.. .|....|+..+... -+|++...++.+|..
T Consensus 193 Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~-~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 193 LILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG-IDPDSLVSLSTTLKA 268 (461)
T ss_pred HHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc-CCccHHHHHHHHHHH
Confidence 999898753 45567778999999999888776554332 23367888888764 458888999999999
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcc---hHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAG---IVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~---~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
|+-.++.+..+.+.|++..|++++.++.+.. +...++.+|+.|+.+++.+..|++.||.+.++.++... .+++.+.
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-~~~p~Vi 347 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-SDDPLVI 347 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-CCChHHH
Confidence 9999999999999999999999996433333 44669999999999999999999999999999977654 3588899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-C-CHHHHHHHHHHHHHHhh
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-G-SAKGKTKAVALLKILVD 296 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~-~~~~k~~A~~~L~~l~~ 296 (315)
+.++.++.-||...+ +....+++ .|+-...+.-++. + ...++++|+++++++..
T Consensus 348 ~~~~a~i~~l~LR~p-dhsa~~ie--~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 348 QEVMAIISILCLRSP-DHSAKAIE--AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHHHhcCc-chHHHHHh--cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999998665 45567777 7777777766664 4 57999999999999954
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.68 E-value=1.1e-14 Score=126.14 Aligned_cols=230 Identities=15% Similarity=0.118 Sum_probs=184.8
Q ss_pred HHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 44 ISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 44 i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
+.+.+-+..|+.+|+. .||.+++.+..++.|.+..+. +.++.+.|+++.+..+|.+ +++.++..|.++|.|++.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSV 83 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCC
Confidence 3567778999999985 689999999999999988876 5678899999999999997 788999999999999999
Q ss_pred CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 122 VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 122 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
..+++..+.. .++.++..+.++..+..++..++++|.||+..++.+..+. +.++.++++|. .++..++..++++
T Consensus 84 ~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~-~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 84 NDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS-SGSEKTKVQVLKV 157 (254)
T ss_pred ChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH-cCChHHHHHHHHH
Confidence 9999988753 4788888666434567888999999999998887776664 57999999996 4678899999999
Q ss_pred HHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHH------------HHHHHHHHccC-c
Q 021242 202 IAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGER------------AAEEVKEMAMQ-V 268 (315)
Q Consensus 202 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~------------~~~~i~~~~~g-~ 268 (315)
|.|||.++...+.+..+++...++.++... .+......++.++.||..+-..+ .-..+.. +.+ .
T Consensus 158 L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~-e~~~~ 234 (254)
T PF04826_consen 158 LVNLSENPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG-ESSQL 234 (254)
T ss_pred HHHhccCHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc-cHHHH
Confidence 999999999999999999999999999864 36777888999999996432211 1111221 122 4
Q ss_pred HHHHHHHHhhCCHHHHHH
Q 021242 269 ADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 269 ~~~L~~ll~~~~~~~k~~ 286 (315)
.+.|..+..+.|++||++
T Consensus 235 ~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 235 AKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHHHHHHcCCCHHHhhh
Confidence 566667777778887765
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.56 E-value=4.8e-12 Score=120.96 Aligned_cols=278 Identities=14% Similarity=0.147 Sum_probs=210.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
-..+.+.|...|.++++.+|.-++..|..++.++......+.+.+.++.++.++.+++..+...|+.+|.+++.++. -.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 35677889999999999999999999999998876667778889999999999999999999999999999998764 33
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+..++.++.|..++.. .+..++..+..++.+++.. ++....+.. .|+++.++..+. ++|.-++.+|+..|.
T Consensus 155 ~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~--~dDiLvqlnalell~ 227 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELD--SDDILVQLNALELLS 227 (503)
T ss_pred HHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhc--CccHHHHHHHHHHHH
Confidence 45578889999999985 4667888899999999864 444555554 588999999999 568788999999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhcCCCcc-h----HHHHHHHHHHHhcC-hhhHHHHHhcC-CHHHHHHHhhcCCCC
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVNGGRAG-I----VEDASAVIAQIAGC-EESVDEFKKCC-GIGVLVDLLDLGTGS 234 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~-~----~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~Lv~ll~~~~~~ 234 (315)
.|+..+.+...+.+.|+++.+..++.+....+ . .-..+....+++.. +... +.... .+..+.+++...
T Consensus 228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v--~~~~p~~~~~l~~~~~s~--- 302 (503)
T PF10508_consen 228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV--LELYPAFLERLFSMLESQ--- 302 (503)
T ss_pred HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999996432222 1 22244566666663 2211 11111 244555555554
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHH-HHHccCcHHHHH----HHHhhCCHHHHHHHHHHHHHHhh
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEV-KEMAMQVADGIA----DVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i-~~~~~g~~~~L~----~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+...+..|..++..++... +.+..+ .. ..+.++..+ ....+++.++|..+-..|.++-.
T Consensus 303 d~~~~~~A~dtlg~igst~--~G~~~L~~~-~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 303 DPTIREVAFDTLGQIGSTV--EGKQLLLQK-QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred ChhHHHHHHHHHHHHhCCH--HHHHHHHhh-cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 7888999999999998642 333444 33 233444444 44556778899999988888844
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.48 E-value=7.7e-13 Score=132.01 Aligned_cols=226 Identities=17% Similarity=0.172 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hhhhhhcCchHHHHHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DSLMSTRGLLDAISHV 96 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~~i~~~~~i~~L~~l 96 (315)
.+|..|.++|-||.-.+..||..+-. .|.|+.+|..|.+...+++..-+.+|.||+=..+ ++++.+.|-+..|...
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 68999999999999888889887765 8999999999998888999999999999997643 5677788899999877
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccC----CCc
Q 021242 97 LRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR--NSPLRSVKDALKALFGIALY----PLN 169 (315)
Q Consensus 97 L~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~----~~~ 169 (315)
.-.. -..........+||||+. -.+||..|.+..|++..||.+|... .....+.+.|...|.|.++. .+.
T Consensus 446 al~~---~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 446 ALRN---KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHh---cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 6431 233556688899999996 5589999998889999999999742 23467889999999998874 345
Q ss_pred HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 021242 170 RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLN 248 (315)
Q Consensus 170 ~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~ 248 (315)
|..+.+..++..|++.|.+ ....++-++|++|+||+. +++..+.+++.|+|+.|..++.+. +.-+-+-+..+|.|
T Consensus 523 RQILR~~NCLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK---hkMIa~GSaaALrN 598 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK---HKMIAMGSAAALRN 598 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh---hhhhhhhHHHHHHH
Confidence 5566778999999999974 467788899999999955 899999999999999999999875 66777778888999
Q ss_pred HhccC
Q 021242 249 LVNFG 253 (315)
Q Consensus 249 l~~~~ 253 (315)
|-.+-
T Consensus 599 Lln~R 603 (2195)
T KOG2122|consen 599 LLNFR 603 (2195)
T ss_pred HhcCC
Confidence 87543
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.5e-11 Score=110.17 Aligned_cols=280 Identities=15% Similarity=0.158 Sum_probs=195.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~ 83 (315)
+.-|.-||..|.-++.+........|..++-. .+|+..+.+.|.++.|++++...+++++...+..|+|++++.. +..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 44566788888888778888888888888877 4799999999999999999999999999999999999999975 555
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+++.|.+|.|..++.+ . .-+..|...+.+++..+..+..+..+ .+|+.+.+.+-.. .+.++-...+..-.||
T Consensus 382 Mv~~GllP~l~~ll~~----d--~~~~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk~v~~~-~~~~vdl~lia~ciNl 453 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDS----D--TKHGIALNMLYHLSCDDDAKAMFAYT-DCIKLLMKDVLSG-TGSEVDLALIALCINL 453 (791)
T ss_pred HhhccchHHHHHHhCC----c--ccchhhhhhhhhhccCcHHHHHHHHH-HHHHHHHHHHHhc-CCceecHHHHHHHHHH
Confidence 6699999999999986 1 23457889999999999999999986 5599999876643 3334434444444577
Q ss_pred ccCCCcHHHHHhhCCcHH-------------------------------------HHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 164 ALYPLNRYQVIALGGVQP-------------------------------------LFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~-------------------------------------L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
|.+..|...+++-.++.. |...+..+.+..+.-.++++|.||.
T Consensus 454 ~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 454 CLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 776555444433222222 1222211123345556888888876
Q ss_pred cChh--------------------------------------------hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 207 GCEE--------------------------------------------SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 207 ~~~~--------------------------------------------~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
..+- ...-+..++.|+.++++|+... .+.+.--+-
T Consensus 534 v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Q-eDDEfV~Qi 612 (791)
T KOG1222|consen 534 VTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQ-EDDEFVVQI 612 (791)
T ss_pred cCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhc-ccchHHHHH
Confidence 3211 1111222345777888777542 233334445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
..++.++..+. ..++.|++ +...-..|++++++.+.++|+-+...|-.+.++
T Consensus 613 iyVF~Q~l~He--~tr~~mik-et~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 613 IYVFLQFLKHE--LTRRLMIK-ETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHH--HHHHHHHh-hccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 56666666653 35577777 355667888999999999999988888777643
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=2.9e-10 Score=108.77 Aligned_cols=271 Identities=15% Similarity=0.085 Sum_probs=205.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhh
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMST 86 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~ 86 (315)
+.+...|+..+.+....++..|..+.+.. .-..+ ..+..+.|...|.++++.++..+++.|.+++.++. ..++.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 34666778777777778888888887542 22222 56778999999999999999999999999988765 356678
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL- 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~- 165 (315)
.+.++.++..+.+ ++.++...|+.+|.+|+..+.+-..+...+. +..|..++. ..+..++..++.++.+++.
T Consensus 118 ~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRD----PDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMS--QSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred ccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHh--ccCHHHHHHHHHHHHHHHhc
Confidence 9999999999997 7889999999999999987776666655444 899999998 4466788889999999987
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCCh---h-HHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGH---R-VKEN 241 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~---~-~~~~ 241 (315)
+++....+.+.|.++.++..+. ++|.-++..++.+|..|+..+++.+-+.+.|.++.+..++.... .++ . .-..
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~-~dp~~~~~~l~g 268 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE-EDPRLSSLLLPG 268 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc-cCCcccchhhhh
Confidence 5666677778899999999996 45666788999999999999999999999999999999998642 222 1 1122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+....+++...+ . .+...-...+..|.++.++.|+..+..|-..+-.+.
T Consensus 269 ~~~f~g~la~~~~-~---~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 269 RMKFFGNLARVSP-Q---EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHHHHHhcCh-H---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 3345555655322 2 222100234455556777889999999988887775
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.38 E-value=1.2e-11 Score=94.98 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=103.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
+.+.++.++++|.++++..+..++.+|.+++..++..+..+.+.|++|.+++++.+.++.++..|+++|.+++.+.. .
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 45689999999999999999999999999999888999999999999999999999999999999999999999874 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
..+.+.|+++.|++++.+ .+.+++..++++|.+|+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~----~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDS----SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHCCChHHHHHHHhc----CCHHHHHHHHHHHHHhhC
Confidence 455688999999999997 578999999999999863
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=4e-11 Score=92.01 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=103.4
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
.+++.|+++.+++++. +++..++..++.+|.+++.. ++.+..+.+.++++.+++++.++ ++.++..++++|++++
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLA 77 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC---CHHHHHHHHHHHHHHc
Confidence 4678899999999996 56778899999999999986 88999999889999999999975 8999999999999999
Q ss_pred ccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 251 NFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 251 ~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
... +.....+.+ .|+++.|..++++++..+++.|.++|.++.
T Consensus 78 ~~~-~~~~~~~~~--~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGP-EDNKLIVLE--AGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCc-HHHHHHHHH--CCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 754 345566666 899999999999999999999999998875
No 24
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.34 E-value=2.8e-10 Score=102.19 Aligned_cols=284 Identities=13% Similarity=0.097 Sum_probs=201.2
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC----CC---HHHHHHHHHHHHhcCccc
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS----SS---HAFQENAAATLLNLSITS 79 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----~~---~~~~~~a~~~L~~la~~~ 79 (315)
.++.|.+..+|++.++..+..++|.+++..+.++|..+.+.||-..+++.|+. .+ .+....+...|.|...++
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 45667777788888999999999999999999999999999997777777754 22 356666778888888776
Q ss_pred c--hhhhhhcCchHHHHHHHhcC------------------------------------------CCCCCHHHHHHHHHH
Q 021242 80 R--DSLMSTRGLLDAISHVLRHH------------------------------------------STSTSSAAVQSSAAT 115 (315)
Q Consensus 80 ~--~~~i~~~~~i~~L~~lL~~~------------------------------------------~~~~~~~~~~~a~~~ 115 (315)
+ +.-+.+.|.++.|..++--+ ....+++..+.+..+
T Consensus 168 ~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fei 247 (604)
T KOG4500|consen 168 RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEI 247 (604)
T ss_pred HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHH
Confidence 4 33334666666554222100 001234455566677
Q ss_pred HHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHH-------HHHHHHHHHHhccCCCcHHHHHhhC-CcHHHHHHHh
Q 021242 116 LHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS-------VKDALKALFGIALYPLNRYQVIALG-GVQPLFSLVV 187 (315)
Q Consensus 116 L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~-------~~~a~~aL~~Ls~~~~~~~~i~~~g-~v~~L~~lL~ 187 (315)
+...+.++..+..+.+. |++.-++.+++.. .+..- ..-++....-|...++.-.++...+ .+..+...+.
T Consensus 248 la~~aend~Vkl~la~~-gl~e~~~~lv~~~-k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 248 LAKAAENDLVKLSLAQN-GLLEDSIDLVRNM-KDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHhcCcceeeehhhc-chHHHHHHHHHhc-ccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 77777788888888874 6788899988842 12111 2223333333444555555555444 6677777775
Q ss_pred cCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc-C-CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHc
Q 021242 188 NGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL-G-TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMA 265 (315)
Q Consensus 188 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~-~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~ 265 (315)
+ .+......+.-++.|+++.+..+..+++.+.+..|++.+.. . .+.+-+.+..++++|.|+.-.-+ .+..++.
T Consensus 326 S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~-- 400 (604)
T KOG4500|consen 326 S-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAP-- 400 (604)
T ss_pred C-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccc--
Confidence 3 45667777777899999999999999999999999997754 2 12355778889999999986433 4467887
Q ss_pred cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 266 MQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 266 ~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+|+.+.++..++...|.+..+--..|+.++++
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 99999999999999888888888888777654
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.30 E-value=4.7e-10 Score=100.74 Aligned_cols=276 Identities=13% Similarity=0.098 Sum_probs=199.7
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CC-------HHHHHHHHHHHHhcCccc
Q 021242 9 RSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SS-------HAFQENAAATLLNLSITS 79 (315)
Q Consensus 9 ~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~-------~~~~~~a~~~L~~la~~~ 79 (315)
..+++.|.+. .++.+.-....+...+ +++..+-.++++|.++.++++++. .+ ......++...--+..++
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 4566777655 4455544444444444 557889999999999999999965 21 123334444444444444
Q ss_pred c--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc---CCChHHHH
Q 021242 80 R--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR---NSPLRSVK 154 (315)
Q Consensus 80 ~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~ 154 (315)
+ .++...+..+..+.+.+++ .+.+....++-+|.|+++.++++..+++. +++..|++++... .++...+.
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S----~d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRS----DDSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcC----CchhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHH
Confidence 4 3344455589999999997 67788888999999999999999999884 8899999998641 35667888
Q ss_pred HHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh-hHHHHHhcC-CHHHHHHHhhcCC
Q 021242 155 DALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE-SVDEFKKCC-GIGVLVDLLDLGT 232 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~-~i~~Lv~ll~~~~ 232 (315)
.++.+|+|+.....||..+..+|++..++.++.. ..++++.+-+++++.+-...+ ...++.+.. -+..|+++-+..
T Consensus 380 A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~- 457 (604)
T KOG4500|consen 380 ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP- 457 (604)
T ss_pred HHHHHHHhccccCCchhhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC-
Confidence 8999999999999999999999999999999974 578899999999998755433 333343332 377888877764
Q ss_pred CCChhHHHHHHHHHHHHhccCC-HHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 233 GSGHRVKENAVSALLNLVNFGG-ERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~-~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+...+...+...+..+-+++. .++...+.+ .|++...+.++.+..-..+..|.-.|-.++
T Consensus 458 -D~aGv~gESnRll~~lIkHs~~kdv~~tvpk--sg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 458 -DFAGVAGESNRLLLGLIKHSKYKDVILTVPK--SGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred -ccchhhhhhhHHHHHHHHhhHhhhhHhhccc--cccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 355566677777777776632 245566766 899999999888877777777766555543
No 26
>PRK09687 putative lyase; Provisional
Probab=99.28 E-value=1e-09 Score=97.13 Aligned_cols=226 Identities=15% Similarity=0.069 Sum_probs=126.5
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
++..++.|+..|.+.+..+|..|+.+|..+-. ..+++.+..++++.++.+|..|+++|..+...+..
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 45677888889988888899888888887742 23467777777777788888888888777543321
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH---
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL--- 160 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL--- 160 (315)
....++.|..++.+ .+++.++..++.+|.++....... . ..+++.+...+. +.++.++..|+++|
T Consensus 88 --~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 88 --QDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAF--DKSTNVRFAVAFALSVI 155 (280)
T ss_pred --hHHHHHHHHHHHhc---CCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhh--CCCHHHHHHHHHHHhcc
Confidence 22345666666432 156677777777777764211100 0 011333334444 23444555555555
Q ss_pred ----------------------------HHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhH
Q 021242 161 ----------------------------FGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 161 ----------------------------~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 212 (315)
..+.... ..+++.|+..|. +++..++..|...|..+-
T Consensus 156 ~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~------ 220 (280)
T PRK09687 156 NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQ-DKNEEIRIEAIIGLALRK------ 220 (280)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhc-CCChHHHHHHHHHHHccC------
Confidence 4431100 022334444442 344444444444444321
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALL 291 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L 291 (315)
+..+++.|++.+..+ + ++..++.+|..+ +. .-++|.|..+++ ++|++++.+|.+.|
T Consensus 221 ----~~~av~~Li~~L~~~---~--~~~~a~~ALg~i---g~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 221 ----DKRVLSVLIKELKKG---T--VGDLIIEAAGEL---GD-----------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ----ChhHHHHHHHHHcCC---c--hHHHHHHHHHhc---CC-----------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 112456666666643 2 333444444443 11 125677788886 67889999888877
Q ss_pred H
Q 021242 292 K 292 (315)
Q Consensus 292 ~ 292 (315)
+
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 5
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.26 E-value=3e-09 Score=98.18 Aligned_cols=279 Identities=12% Similarity=0.097 Sum_probs=191.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc-hhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR-DSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~-~~~ 83 (315)
....+++.+|...+.-++..|...|..+...++.+.......-...-|...|++. +...+..|+.+|..+...++ +..
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH
Confidence 3345666788888888999999999988755443211111111223444555543 35678888999999888876 556
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+.+.++++.|+.+|+... ...+..-.++-++|-||..++....+.. .++|+.|+++++.. ...++.+.++.+|.||
T Consensus 181 f~~~~~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s-~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 181 FVLADGVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKES-TKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHccCHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 667779999999998531 2568888999999999998876666654 57899999999963 4668999999999999
Q ss_pred ccCC-------CcHHHHHhhCCcHHHHHHHhcC--CCcchHHHHH-------HHHHHHh---------------------
Q 021242 164 ALYP-------LNRYQVIALGGVQPLFSLVVNG--GRAGIVEDAS-------AVIAQIA--------------------- 206 (315)
Q Consensus 164 s~~~-------~~~~~i~~~g~v~~L~~lL~~~--~~~~~~~~a~-------~~L~~L~--------------------- 206 (315)
...+ .....|+..|..+ +++.|... .|+.+.+..- ..+..++
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~ 335 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK 335 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCC
Confidence 9843 1234566666655 55555332 3444443311 1222233
Q ss_pred ---cChhhHHHHHhcCC--HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 207 ---GCEESVDEFKKCCG--IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 207 ---~~~~~~~~i~~~~~--i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
.+.+|...|.+.++ +..|+++|... .++.+..-||.=+..+++..+ .. +.+++ ..|+=..+..++.++++
T Consensus 336 se~FW~EN~~kf~~~~~~llk~L~~iL~~s--~d~~~laVAc~Dige~vr~~P-~g-r~i~~-~lg~K~~vM~Lm~h~d~ 410 (429)
T cd00256 336 SEKFWRENADRLNEKNYELLKILIHLLETS--VDPIILAVACHDIGEYVRHYP-RG-KDVVE-QLGGKQRVMRLLNHEDP 410 (429)
T ss_pred CchHHHHHHHHHHhcchHHHHHHHHHHhcC--CCcceeehhhhhHHHHHHHCc-cH-HHHHH-HcCcHHHHHHHhcCCCH
Confidence 12356666665554 78899999643 356666667777788887664 33 34444 38998999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021242 282 KGKTKAVALLKIL 294 (315)
Q Consensus 282 ~~k~~A~~~L~~l 294 (315)
+||..|-.+++.+
T Consensus 411 ~Vr~eAL~avQkl 423 (429)
T cd00256 411 NVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988766
No 28
>PRK09687 putative lyase; Provisional
Probab=99.21 E-value=3.4e-09 Score=93.71 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=77.6
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
.++.|..+|.+.+..++..|+.+|..+. ....++.+..++++ +++..+..++++|..|-..+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccc---
Confidence 4789999999999999999999997763 45577888888887 7889999999999998654332
Q ss_pred hhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
. ...++.|..++.. +.++.++..|+.+|.+++.
T Consensus 88 --~-~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 88 --Q-DNVFNILNNLALE-DKSACVRASAINATGHRCK 120 (280)
T ss_pred --h-HHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccc
Confidence 1 2347888887443 4578899999999999875
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.21 E-value=8.1e-10 Score=99.63 Aligned_cols=256 Identities=17% Similarity=0.129 Sum_probs=170.3
Q ss_pred HHHHHHHhccCchhhHHHHhC---CCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc--hhhhhh------cCchHHH
Q 021242 27 LAELRLLSKHDAEIRPMISEA---GSIPYLAEILYS--SSHAFQENAAATLLNLSITSR--DSLMST------RGLLDAI 93 (315)
Q Consensus 27 ~~~L~~l~~~~~~~~~~i~~~---g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~--~~~i~~------~~~i~~L 93 (315)
+..+..+-+..++.|..+.+. +....++.+|+. .++++.++.+..+..+..+++ ...+.. .....++
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f 110 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF 110 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence 444555544444455555552 347777788865 467889999999988777654 233221 2257788
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccC--CChHHHHHHHHHHHHhccCCCcHH
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRN--SPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
++++.+ ++..++..++..|..|....+....-.. .++++.+++++.+.. .+...+..|+.+|.+|...++.|.
T Consensus 111 l~ll~~----~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 111 LKLLDR----NDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp HHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred HHHhcC----CCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 887776 6778888999999999876655443322 355899999887421 123456889999999999999999
Q ss_pred HHHhhCCcHHHHHHH------hcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHH
Q 021242 172 QVIALGGVQPLFSLV------VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSA 245 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL------~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~ 245 (315)
.+.+.|+++.+.+++ ....+..++..++-+++.|+..++..+.+.+.+.|+.|+++++.. ..+++-.-++.+
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~la~ 263 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS--IKEKVVRVSLAI 263 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc--ccchHHHHHHHH
Confidence 999999999999999 222344667789999999999999999998888899999999974 367888889999
Q ss_pred HHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHH
Q 021242 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAVALL 291 (315)
Q Consensus 246 L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L 291 (315)
|.|+.....+.....|+. .|+++.+..+... +|++..+.-..+-
T Consensus 264 l~Nl~~~~~~~~~~~mv~--~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVL--CGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHHTTSSSSTTHHHHHHH--H-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHH--ccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999987655447788887 7777777777665 5888887666543
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.9e-09 Score=96.98 Aligned_cols=267 Identities=15% Similarity=0.153 Sum_probs=199.0
Q ss_pred hHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh-
Q 021242 7 TVRSLVTKLGSV---SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS- 82 (315)
Q Consensus 7 ~i~~Lv~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~- 82 (315)
.+.++...++-- .++....|+..|.+++.+ ...-..++...++..||+.|...+.++.......|..|+.-.+++
T Consensus 261 e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~ 339 (791)
T KOG1222|consen 261 EIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI 339 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH
Confidence 344444444421 235667788888999865 556678888999999999999988899999999999999887655
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+.+.|.++.|++++.. .+++.+......|+||+.....+..+.. +|++|.|+.++.+ + .-...|+..|+.
T Consensus 340 ~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~--d--~~~~iA~~~lYh 410 (791)
T KOG1222|consen 340 VMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDS--D--TKHGIALNMLYH 410 (791)
T ss_pred HHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCC--c--ccchhhhhhhhh
Confidence 57799999999999997 7899999999999999999888888887 6889999999983 2 233558999999
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHh-hcCCCCChhHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL-DLGTGSGHRVKEN 241 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll-~~~~~~~~~~~~~ 241 (315)
+|.+++.+..+....+++.+.+.+.+..+..+.-...+.--|||-...+.+-+++..|+..|.+.- +.. +. -
T Consensus 411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~---D~----l 483 (791)
T KOG1222|consen 411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR---DL----L 483 (791)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc---ch----H
Confidence 999999888888889999999888755455554444444458888888888888766888877743 322 11 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHHHHh
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLKILV 295 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~~l~ 295 (315)
-...+.|++.+++. ..-..+ .-+..|..++..+ ++..--.+-.+|.+|.
T Consensus 484 LmK~vRniSqHeg~-tqn~Fi----dyvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 484 LMKVVRNISQHEGA-TQNMFI----DYVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HHHHHHHhhhccch-HHHHHH----HHHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 34668888887653 222333 3667777777775 5555555666665554
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.19 E-value=4.7e-10 Score=101.18 Aligned_cols=223 Identities=16% Similarity=0.144 Sum_probs=157.4
Q ss_pred hHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCchhhHHHHh------CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 7 TVRSLVTKLG--SVSEQTRAEALAELRLLSKHDAEIRPMISE------AGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 7 ~i~~Lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
+...++.+|+ ++++++....+..+..+...++...+.+.+ .....++++++.++|.-++..|+.+|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3444444443 467899999999999999887766666655 12688999999989999999999999888766
Q ss_pred cc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHh-----hccCCChHH
Q 021242 79 SR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEII-----KTRNSPLRS 152 (315)
Q Consensus 79 ~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll-----~~~~~~~~~ 152 (315)
.+ +......+.++.+++++++...+++.+.+..++.+|.+|...++.|..+.+.+| ++.|+.++ .+...+.+.
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~-v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG-VSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH-HHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc-HHHHHHHHHhhcccCCCCchhH
Confidence 54 221112557788998887532112334557899999999999999999988666 99999999 222345678
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh--hHHHHHhcCCHHHHHHHhhc
Q 021242 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE--SVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~~i~~Lv~ll~~ 230 (315)
+-+++-++|-|+.+++....+...+.++.|+++++....+.+..-++++++||...+. ....++..+ ++.++..|..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~-~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG-LLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc-HHHHHHHHhc
Confidence 8899999999999999999999999999999999865666788889999999987654 777777644 5666776664
Q ss_pred C
Q 021242 231 G 231 (315)
Q Consensus 231 ~ 231 (315)
.
T Consensus 294 r 294 (312)
T PF03224_consen 294 R 294 (312)
T ss_dssp S
T ss_pred C
Confidence 3
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=9.4e-08 Score=97.82 Aligned_cols=226 Identities=17% Similarity=0.116 Sum_probs=136.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
...++.|++.|+++++.+|..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 4567899999999999999999999998742 34689999999999999999999999776321
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
....+.|...|++ +++.++..++.+|..+.. +. ...|+..|. +.++.++..|+++|..+.
T Consensus 683 --~~~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~-----------~~-~~~l~~~L~--D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 683 --LPPAPALRDHLGS----PDPVVRAAALDVLRALRA-----------GD-AALFAAALG--DPDHRVRIEAVRALVSVD 742 (897)
T ss_pred --cCchHHHHHHhcC----CCHHHHHHHHHHHHhhcc-----------CC-HHHHHHHhc--CCCHHHHHHHHHHHhccc
Confidence 1123455566665 566677666666665421 11 234455555 345566666666665431
Q ss_pred cC-----------CCcHHHHH---------hhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHH
Q 021242 165 LY-----------PLNRYQVI---------ALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVL 224 (315)
Q Consensus 165 ~~-----------~~~~~~i~---------~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~L 224 (315)
.. ++.|.... ....++.|..++. ++++.++..|+..|..+...+ ..+..+
T Consensus 743 ~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-D~d~~VR~aA~~aLg~~g~~~---------~~~~~l 812 (897)
T PRK13800 743 DVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-DPDPLVRAAALAALAELGCPP---------DDVAAA 812 (897)
T ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-CCCHHHHHHHHHHHHhcCCcc---------hhHHHH
Confidence 10 00111000 0112455555553 445555555555555542210 012345
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+..+.+. +..++..|+.+|..+.. ...++.|..+++++++.||..|...|..+
T Consensus 813 ~~aL~d~---d~~VR~~Aa~aL~~l~~--------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 813 TAALRAS---AWQVRQGAARALAGAAA--------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHhcCC---ChHHHHHHHHHHHhccc--------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 5555543 56666666666655421 12346777888888899999999888776
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-07 Score=83.95 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=146.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch--hhhhhcCchHHH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD--SLMSTRGLLDAI 93 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~--~~i~~~~~i~~L 93 (315)
++.+++.+..|+.-|..++.+ -+|-..+...|++++++.++++.+..+|+.|+++|..++.++++ ..+.+.|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456789999999999999954 78999999999999999999999999999999999999998762 345688999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcHH
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNRY 171 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~~ 171 (315)
+..+.+ +++...+..|..+++.|-. +......+...+| ...|..++++.+.+...+..++-.+..|.... ..+.
T Consensus 172 l~~ls~---~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 172 LKILSS---DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHcc---CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 999986 3566777889999999996 5566667776678 89999999954367788889999999998844 3444
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
.+-..|....+..+.. ..+.++.+.++..+..+..
T Consensus 248 ~~~~~~f~~~~~~l~~-~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLIS-SLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhh-ccchhhhHHHHHHHHHHHH
Confidence 3334566666666664 4456677776665554433
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=5.6e-07 Score=86.51 Aligned_cols=281 Identities=16% Similarity=0.184 Sum_probs=202.3
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc-
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~- 80 (315)
-.+|+.|+..+.++ -++-|+.|+..|..+++ .+|..+...| +++|+..|.. .|++...+++.++.++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 35799999999876 47999999999999985 4777766665 9999999975 578999999999999887652
Q ss_pred -------h----------h-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhhhhhccccHHHHH
Q 021242 81 -------D----------S-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPIIGAKRDIIHSLI 140 (315)
Q Consensus 81 -------~----------~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv 140 (315)
+ . .+...+.|..|+.++.. -+.-+|..+...|.+|... .+.+..+....-.|..|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 1 1 23468889999999986 4567788888888888753 345666666554499999
Q ss_pred HHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCC--Cc-chHHHHHHHHHHHhcC-hhhHHHH
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGG--RA-GIVEDASAVIAQIAGC-EESVDEF 215 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~--~~-~~~~~a~~~L~~L~~~-~~~~~~i 215 (315)
.+|. +.-..++-.|+-.|..|..+.....+++- .++...|+.++...+ +- -+.+.|+.+|-||-.. ..+..-|
T Consensus 173 dlL~--DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 173 DLLR--DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHh--hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 9998 33556777899999999997777666654 799999999997543 22 4678899999999885 5566666
Q ss_pred HhcCCHHHHHHHhhcC---C-CCChhHH------HHHHHHHHHHhccCCH-----HHHHHHHHHccCcHHHHHHHHhhC-
Q 021242 216 KKCCGIGVLVDLLDLG---T-GSGHRVK------ENAVSALLNLVNFGGE-----RAAEEVKEMAMQVADGIADVAQNG- 279 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~---~-~~~~~~~------~~a~~~L~~l~~~~~~-----~~~~~i~~~~~g~~~~L~~ll~~~- 279 (315)
.+.+.||+|.++|... + ....+.. -.++.++..+...+.. .+.+.|.+ .+++..|+.++-+.
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s--s~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS--SHLLDVLCTILMHPG 328 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH--cchHHHHHHHHcCCC
Confidence 6666799999888642 1 1111211 1234444444433322 12245666 89999999877664
Q ss_pred -CHHHHHHHHHHHHHHhhC
Q 021242 280 -SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 -~~~~k~~A~~~L~~l~~~ 297 (315)
...++..+.-......++
T Consensus 329 vp~dIltesiitvAevVRg 347 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVRG 347 (970)
T ss_pred CcHhHHHHHHHHHHHHHHh
Confidence 457777777666666543
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.95 E-value=4.3e-07 Score=93.04 Aligned_cols=227 Identities=18% Similarity=0.127 Sum_probs=148.0
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-----
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS----- 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~----- 79 (315)
+..++.|++.|+++++.+|..|+.+|..+....+ ..+.|...|++.++.+|..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 4568899999999999999999999988753211 1245555565566666666665554432110
Q ss_pred ------c---h----hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc
Q 021242 80 ------R---D----SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR 146 (315)
Q Consensus 80 ------~---~----~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~ 146 (315)
+ + ..+..-+..+.|..++.+ ++++++..++.+|..+... . ...++.|..++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D----~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~-- 785 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATD----ENREVRIAVAKGLATLGAG--------G-APAGDAVRALTG-- 785 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC----CCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhc--
Confidence 0 0 000011223445555554 5566666666666654321 1 122678888888
Q ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHH
Q 021242 147 NSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVD 226 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ 226 (315)
+.++.++..|+.+|.++...+ .++..++..|. +++..++..|+..|..+.. ...++.|+.
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPP---------DDVAAATAALR-ASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc-CCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 457889899999998864321 11245777785 5677788888888876531 234688999
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 227 LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 227 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
+|.+. +..++..|+.+|..+. ..+. ..+.|...++++++.||+.|...|+
T Consensus 846 ~L~D~---~~~VR~~A~~aL~~~~--~~~~-----------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDP---HLDVRKAAVLALTRWP--GDPA-----------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCC---CHHHHHHHHHHHhccC--CCHH-----------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99875 8999999999998862 2222 2345557888999999999999885
No 36
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=3.8e-07 Score=79.10 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=177.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMS 85 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~ 85 (315)
...+|++|++.+|.+|..|+..+..+... ..+.... +.-.|+.+.+++....+ -+.|+.+|.|++.+.. ++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45789999999999999999999999866 2232222 24568889999987666 6788999999998875 44333
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhc-----cccHHHHHHHhhccCCCh-HHHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAK-----RDIIHSLIEIIKTRNSPL-RSVKDALK 158 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~-----~g~i~~Lv~ll~~~~~~~-~~~~~a~~ 158 (315)
+. .+..+++.+.++ .+ ..-...|..|.||+..+.....+ ... .|++........++ .+. .-..+-+-
T Consensus 81 ~~-~~k~l~~~~~~p---~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~-~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP---QS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKS-YNAYAEFHYLAP 154 (353)
T ss_pred HH-HHHHHHHHhcCc---cc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcc-cccccchhHHHH
Confidence 43 888888888763 22 34456778999999876543322 211 36334444444421 221 23456778
Q ss_pred HHHHhccCCCcHHHHHhhCCcHH-HHHHHhcCCCcchH-HHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHh--------
Q 021242 159 ALFGIALYPLNRYQVIALGGVQP-LFSLVVNGGRAGIV-EDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL-------- 228 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~-L~~lL~~~~~~~~~-~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll-------- 228 (315)
.+.||++.+..|..+.....++. -+.-+.+ ++..++ ....++|.|+|........+.. ..+..+..+|
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccc
Confidence 89999999999988876553321 1111222 233443 4588999999998888777776 3333333222
Q ss_pred ----------------hcC-C-CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHH
Q 021242 229 ----------------DLG-T-GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAV 288 (315)
Q Consensus 229 ----------------~~~-~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~ 288 (315)
-.+ . ..++.++..-+.+|..||.... . ++.++ .-+++.+++.+.. +++.+++.+-
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--G-Re~lR--~kgvYpilRElhk~e~ded~~~ace 307 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--G-REVLR--SKGVYPILRELHKWEEDEDIREACE 307 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--h-HHHHH--hcCchHHHHHHhcCCCcHHHHHHHH
Confidence 100 0 2367788889999999987432 2 45665 4444445554444 5899999998
Q ss_pred HHHHHHhh
Q 021242 289 ALLKILVD 296 (315)
Q Consensus 289 ~~L~~l~~ 296 (315)
.+-+.+-+
T Consensus 308 ~vvq~Lv~ 315 (353)
T KOG2973|consen 308 QVVQMLVR 315 (353)
T ss_pred HHHHHHHh
Confidence 88888765
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.85 E-value=3.6e-07 Score=88.33 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=163.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh-h
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-M 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-i 84 (315)
.-++.+.+.|.+++|.+|.+|+.++..+.+.+++ .+... .++.+.++|.+.++.++..|+.++..+ ..+++.. -
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~ 188 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh
Confidence 3456677777888888888888888888766554 22223 588888888888888888888888888 2222111 1
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.-+..++.|.+++.. .++-.+.....+|..++........- ..+++.+..+++ +.++.+...|.+++..+.
T Consensus 189 ~~~~~~~~L~~~l~~----~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 189 LIPKLIRILCQLLSD----PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHHHHHHHHHHTC----CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHhhhcccc----cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhh--ccccHHHHHHHHHHHHhh
Confidence 122234444444444 56677777777777665433221100 245788888888 347788889999999877
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
..+. .-..+++.|.+++. +++..++..++..|..++... ...+ . .....+..+... ++..++..++.
T Consensus 260 ~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~--~d~~Ir~~~l~ 326 (526)
T PF01602_consen 260 PSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYD--DDPSIRKKALD 326 (526)
T ss_dssp SSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCS--SSHHHHHHHHH
T ss_pred cchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCC--CChhHHHHHHH
Confidence 6554 34577889999996 567778988999999997743 2222 2 233334455532 37889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHh
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILV 295 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~ 295 (315)
+|..++.. ..... +++.|...+. .+++.+++.+...+..+.
T Consensus 327 lL~~l~~~---~n~~~-------Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 327 LLYKLANE---SNVKE-------ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHH--H---HHHHH-------HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred HHhhcccc---cchhh-------HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 99999752 33233 3456666664 457778888877666554
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.3e-07 Score=91.45 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=130.5
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
.-++|.|+.+|+. ..++++...|+|+|.+|+- .|+....+|+.++||.|++-|..-....+.|.++.+|..+++.+
T Consensus 210 ~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 210 KSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 3579999999986 3578999999999999998 78999999999999999988864356678899999999998732
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
-+++.++|++...+.++..- +..+|..|+.+..|+|+.-.++.-..+.+ ++|.|..+++..+.+..+.++-.+
T Consensus 287 ~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~~v~e----alPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDEFHFVME----ALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCccchHHHH----HHHHHHHHHhhccchhHHHHHHHH
Confidence 25788999999999999875 88999999999999998654444466755 999999999999888888888877
Q ss_pred HHHhhC
Q 021242 292 KILVDD 297 (315)
Q Consensus 292 ~~l~~~ 297 (315)
..+.+.
T Consensus 360 ~ri~d~ 365 (1051)
T KOG0168|consen 360 TRIADG 365 (1051)
T ss_pred HHHHHh
Confidence 776653
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.82 E-value=1.1e-06 Score=81.53 Aligned_cols=222 Identities=13% Similarity=0.161 Sum_probs=163.0
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhC-----CCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEA-----GSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
..++..++.+|+.. .+++....+..+..+...++..-..+.+. ....+++++|..+|.-++..|+.+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 46777888888754 56888888999999988776555566654 5788899999888888899999999777654
Q ss_pred cchh--hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 79 SRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 79 ~~~~--~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
.... -....-..+-|...++++ .+.+.+..++.+|..|...++.|..+.+.+| ++.|+++|+....+.+.+-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~-v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRFAFVLADG-VPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHHHHHHccC-HHHHHHHHhhccccHHHHHHH
Confidence 3211 110111333445555541 2456677888999999999999999987766 899999998532356888899
Q ss_pred HHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh-------hhHHHHHhcCCHHHHHHHhh
Q 021242 157 LKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE-------ESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~~~~i~~~~~i~~Lv~ll~ 229 (315)
+-++|-|+.+++....+.+.+.++.+++++...+-+.+..-++.+|.||...+ .....+++. +++.++..|+
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~~L~ 286 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQSLE 286 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHHHHh
Confidence 99999999998877777778999999999975555678888999999997743 122334433 5677788776
Q ss_pred cC
Q 021242 230 LG 231 (315)
Q Consensus 230 ~~ 231 (315)
..
T Consensus 287 ~r 288 (429)
T cd00256 287 QR 288 (429)
T ss_pred cC
Confidence 54
No 40
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.81 E-value=1.9e-06 Score=77.81 Aligned_cols=279 Identities=14% Similarity=0.093 Sum_probs=184.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-hh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
-.-++.+.+|...+.-+...+.+.|+.++......- ...+ .=....|-..+.+ .+++....|+++|.-+...++ +-
T Consensus 114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred cchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 334566777777777777668888888876543211 1111 0112223333444 566778889999999988887 44
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+...+|+..++..+.+. -.+.+++-..+.++|-|+.++.....+.. .+.|+.|.++++.+ ...++.+.++.++.|
T Consensus 193 ~~v~adg~~~l~~~l~s~--~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~-~KEKV~Rivlai~~N 268 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILAST--KCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKES-TKEKVTRIVLAIFRN 268 (442)
T ss_pred eeeecCcchhhHHHHhcc--CcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 445788999999998532 25678888999999999998887777744 57799999999963 567888999999999
Q ss_pred hccCCC-------cHHHHHhhCCcHHHHHHHhcC-CCcchHHH-------HHHHHHHHhc--------------------
Q 021242 163 IALYPL-------NRYQVIALGGVQPLFSLVVNG-GRAGIVED-------ASAVIAQIAG-------------------- 207 (315)
Q Consensus 163 Ls~~~~-------~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~-------a~~~L~~L~~-------------------- 207 (315)
+....+ ....|+..++.+.+--+..+. .++.+.+. .-.....||+
T Consensus 269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence 998552 234556555555544443321 23444322 1122223432
Q ss_pred ----ChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 208 ----CEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 208 ----~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
+.+|...+-+.. .+..|+++|+.. .++..---||-=+...-..++ +.+.-+.+ -||-+.+.+++.+++|
T Consensus 349 ~e~FW~eNa~rlnennyellkiL~~lLe~s--~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~k--~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 349 SEKFWRENADRLNENNYELLKILIKLLETS--NDPIILCVACHDIGEYVRHYP-EGKAVVEK--YGGKERVMNLLNHEDP 423 (442)
T ss_pred ccchHHHhHHHHhhccHHHHHHHHHHHhcC--CCCceeehhhhhHHHHHHhCc-hHhHHHHH--hchHHHHHHHhcCCCc
Confidence 234455554443 378899999874 345555555555666666554 44444444 8999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021242 282 KGKTKAVALLKIL 294 (315)
Q Consensus 282 ~~k~~A~~~L~~l 294 (315)
+||-.|-.+.+.|
T Consensus 424 ~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 424 EVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999987765
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.1e-06 Score=78.13 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHH
Q 021242 104 TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPL 182 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L 182 (315)
.+++-++.|..-|..+...=+|..-+...+| .++++..+. +.+..++..|+++|...++ +|.....+++.|+++.|
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~gg-l~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGG-LVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccC-HHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4677788888888888876666666777777 677777998 6789999999999999998 57788899999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHH
Q 021242 183 FSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEV 261 (315)
Q Consensus 183 ~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i 261 (315)
+..+.++++..++.+|+.+++.|-. .+.+...|...+|...|...++.+ ..+...|..++-.+..+..... .. ..+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~-s~-~d~ 248 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQEDK-SD-EDI 248 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhh-hh-hhH
Confidence 9999765556778899999999977 578999999999999999999975 2477888889998998876432 22 234
Q ss_pred HHHccCcHHHHHHHHhhCCHHHHHHHHHH-HHHHhh
Q 021242 262 KEMAMQVADGIADVAQNGSAKGKTKAVAL-LKILVD 296 (315)
Q Consensus 262 ~~~~~g~~~~L~~ll~~~~~~~k~~A~~~-L~~l~~ 296 (315)
.. ..|..+.+..+....+..+++.|... |..++.
T Consensus 249 ~~-~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 249 AS-SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HH-HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 44 26677777788888888888888774 444444
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.78 E-value=7.5e-07 Score=86.13 Aligned_cols=257 Identities=20% Similarity=0.236 Sum_probs=181.5
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
..++.+...|.++++.+|.-|+.+|.++.. ++.... .++.+.+++.++++-+|..|+.++..+....+.. +.
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-~~ 150 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-VE 150 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-HH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-HH
Confidence 467788899999999999999999999983 333222 4889999999999999999999998887654332 22
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.. .++.+.++|.+ .++.++..|+.++..+...++ ....+ ..++..|..++. ..++-.+..+++.|..++
T Consensus 151 ~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i~~~~~~~~~~~---~~~~~~L~~~l~--~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 DE-LIPKLKQLLSD----KDPSVVSAALSLLSEIKCNDDSYKSLI---PKLIRILCQLLS--DPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp GG-HHHHHHHHTTH----SSHHHHHHHHHHHHHHHCTHHHHTTHH---HHHHHHHHHHHT--CCSHHHHHHHHHHHTTST
T ss_pred HH-HHHHHhhhccC----CcchhHHHHHHHHHHHccCcchhhhhH---HHHHHHhhhccc--ccchHHHHHHHHHHHhcc
Confidence 22 68999999987 678899999999999811111 11111 233555566655 458888899999999888
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
........ ....++.+..++. +.+..+.-.+..++..+...+. .-..+++.|++++.+. ++.++..++.
T Consensus 221 ~~~~~~~~--~~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~---~~nvr~~~L~ 289 (526)
T PF01602_consen 221 PMEPEDAD--KNRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSS---DPNVRYIALD 289 (526)
T ss_dssp SSSHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSS---SHHHHHHHHH
T ss_pred cCChhhhh--HHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcc---cchhehhHHH
Confidence 64432221 0456778888886 4566778888888888877655 2234578899999864 7889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHhhCCCC
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.|..++.... ..+ . ........+. ++++.+|..+..+|..+....|.
T Consensus 290 ~L~~l~~~~~-----~~v---~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 290 SLSQLAQSNP-----PAV---F-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHCCHCH-----HHH---G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHhhcccc-----hhh---h-hhhhhhheecCCCChhHHHHHHHHHhhcccccch
Confidence 9999987541 122 1 2222334555 78999999999999888765543
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.1e-06 Score=85.11 Aligned_cols=215 Identities=15% Similarity=0.100 Sum_probs=162.5
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccchh
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRDS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~~ 82 (315)
+.-||.||.+|++. +++++..|+++|..++.--|.....+++.++||.|+.-|.. +..++-+.++.+|-.++....+.
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 45689999999864 78999999999999998888899999999999999887754 66789999999999998766666
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
++ ++|++...+.+|.-+ +.-++..|..+..|++. ..+.-..+++ . +|.|..+|+ ..+.+..+.++-++
T Consensus 290 iL-~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~Cksi~sd~f~~v~e--a-lPlL~~lLs--~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 290 IL-QAGALSAVLSYLDFF----SIHAQRVALAIAANCCKSIRSDEFHFVME--A-LPLLTPLLS--YQDKKPIESVCICL 359 (1051)
T ss_pred HH-hcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccchHHHH--H-HHHHHHHHh--hccchhHHHHHHHH
Confidence 65 999999999999863 45677888888899883 3343444443 3 899999999 45777878877777
Q ss_pred HHhcc----CCCcHHHHHhhCCcHHHHHHHhcCC---CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhh
Q 021242 161 FGIAL----YPLNRYQVIALGGVQPLFSLVVNGG---RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 161 ~~Ls~----~~~~~~~i~~~g~v~~L~~lL~~~~---~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
..++. +++--.++...|.+....+++.-.+ +.++.-.....|.-+|+ ++..+......+....|..+|.
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 77664 3444467888899999999995322 12333345666777766 4777777766665555555654
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.5e-06 Score=86.85 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=164.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--h
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL--M 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~--i 84 (315)
++.+-.+|.|.++..|..|+.+|..++....+ ..... ..+++.++..|++++|.+|-+|+.+++.++.+-...+ -
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~--~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSD--VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 45666778899999999999999999866433 22223 5678888888999999999999999999998854322 1
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
..+-.++.|+..+.+ ..++.++..|+.++-|++........-..-.+++..++.+|.. ++++.+++.+..+|...+
T Consensus 428 ~~e~l~~aL~~~ld~---~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~-~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 428 HHERLPPALIALLDS---TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ-SSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHhccHHHHHHhcc---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHH
Confidence 244567889999987 3778899999999999998776555555555666655655554 578899999999999988
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc--ChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG--CEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
..-+....=.-.-.+|.|..+|....+...++..-.++-.++. ..-|++.|.... .+..+..+-.+....+...+.
T Consensus 504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~s 583 (1075)
T KOG2171|consen 504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRS 583 (1075)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHH
Confidence 6544443333346678888888633334444443333333322 234566665432 244444442111123566777
Q ss_pred HHHHHHHHHhccCCHH
Q 021242 241 NAVSALLNLVNFGGER 256 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~ 256 (315)
.......++|+...++
T Consensus 584 y~~~~warmc~ilg~~ 599 (1075)
T KOG2171|consen 584 YMIAFWARMCRILGDD 599 (1075)
T ss_pred HHHHHHHHHHHHhchh
Confidence 7778888888765544
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=9.5e-07 Score=83.62 Aligned_cols=287 Identities=13% Similarity=0.112 Sum_probs=183.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHH--HHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPM--ISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~ 81 (315)
..+|.|.++|.+++...+..|..+|..++.++.+.-+. .-+ +-.||.++++.++.++++|..|+.++-.+-.....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 45789999999999899999999999999876543222 111 34589999999999999999999988444333222
Q ss_pred hhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
.++ .-...++.+..+-.+ .+++++.+.|.++..|..+...|-. -.-+++++.++...++ .+..+-..|+...
T Consensus 208 al~~~iD~Fle~lFalanD----~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML~~tqd--~dE~VALEACEFw 280 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALAND----EDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYMLQRTQD--VDENVALEACEFW 280 (885)
T ss_pred HHHHHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHHHHccC--cchhHHHHHHHHH
Confidence 222 112245555555544 7899999999999999976654432 2224678888888884 4677889999999
Q ss_pred HHhccCCCcHHHHHh--hCCcHHHHHHHh-cCCCc---------------------------------------------
Q 021242 161 FGIALYPLNRYQVIA--LGGVQPLFSLVV-NGGRA--------------------------------------------- 192 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~--~g~v~~L~~lL~-~~~~~--------------------------------------------- 192 (315)
..++..+-.+..+.. ...+|.|+.-+. ++.+.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999988855544443 255665543221 00000
Q ss_pred ---------chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC-CCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 193 ---------GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG-TGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 193 ---------~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
.++...+++|..|+. +.....++.++.+|+.. ......+||.++-+|.+++.. +-.-++
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG----cM~g~~ 429 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG----CMQGFV 429 (885)
T ss_pred ccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH----Hhhhcc
Confidence 112222222222221 22223345555555422 113678999999999999742 223343
Q ss_pred HHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccchHHHHhhh
Q 021242 263 EMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEEILKKL 313 (315)
Q Consensus 263 ~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~~~~~~~~~ 313 (315)
.+=-..+|.|+.++.+..|-||...+|+|.+.+.+--.. ..++++||+
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~---~~~~~f~pv 477 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD---SRDEYFKPV 477 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC---ChHhhhHHH
Confidence 311235788889999999999999999998888763322 255555553
No 46
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.59 E-value=2.4e-06 Score=80.84 Aligned_cols=172 Identities=12% Similarity=0.112 Sum_probs=124.6
Q ss_pred hhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 021242 40 IRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 40 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L 116 (315)
+++.+-+.-....+.......|.++..+|+..+.+++..-. .. ....++..+|++++.. +..-++..+.++|
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~d----p~~~i~~~~lgai 443 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMD----PEIMIMGITLGAI 443 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhC----cchhHHHHHHHHH
Confidence 34444444444444444444577788888888888876632 33 5567789999999976 5557778899999
Q ss_pred HHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHH-HhhCCcHHHHHHHhcCCCcch
Q 021242 117 HSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQV-IALGGVQPLFSLVVNGGRAGI 194 (315)
Q Consensus 117 ~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i-~~~g~v~~L~~lL~~~~~~~~ 194 (315)
+||.. +.+.+..+-..+| |+.+.+++.+ .++..+..++|+|+++..+.++..+. ..+..-..++..+..+|+.++
T Consensus 444 ~NlVmefs~~kskfl~~ng-Id~l~s~~~~--~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLRNNG-IDILESMLTD--PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HHHHhhcccHHHHHHHcCc-HHHHHHHhcC--CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 99995 7788888888767 9999999994 48899999999999999976655433 334443444444445789999
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhcC
Q 021242 195 VEDASAVIAQIAG-CEESVDEFKKCC 219 (315)
Q Consensus 195 ~~~a~~~L~~L~~-~~~~~~~i~~~~ 219 (315)
+|.++.+|+||.. +.+...-+.+.-
T Consensus 521 qeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 521 QEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 9999999999954 566666666543
No 47
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.53 E-value=8.3e-06 Score=74.64 Aligned_cols=262 Identities=18% Similarity=0.155 Sum_probs=180.9
Q ss_pred hhhHHHHHHHhCCCCHH--HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-
Q 021242 5 RRTVRSLVTKLGSVSEQ--TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~--~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~- 80 (315)
++++..|++++.+++-+ +|.+|...|..+.. .+|++.++..| ...++.+-+. ..++.++-.+.+|.++..+.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 46788999999999765 59999999998874 47999999876 5555555544 446788889999999999875
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--CchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
..-++..|+++.++...+. .++.+...++.+|.|++... ..+..|.+... -+-|+-+-. ..|.-.+.+|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rR----t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~-~EWLF~LA~--skDel~R~~AC 328 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRR----TDPALLRHCALALGNCALHGGQAVQRRMVEKRA-AEWLFPLAF--SKDELLRLHAC 328 (832)
T ss_pred HHHHHHhhcccchheeeccc----CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh-hhhhhhhhc--chHHHHHHHHH
Confidence 2334589999999999986 57899999999999998533 34555555433 456666655 34666778899
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcc-hHHHHHHHHHHHhcChhhHHHHHhcC---CHHHHHHHhhcCCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAG-IVEDASAVIAQIAGCEESVDEFKKCC---GIGVLVDLLDLGTG 233 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~-~~~~a~~~L~~L~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~ 233 (315)
-+..-|+.+.+.-..+.+.|.+..+-.++.+ -++. +...+ ..-.+.. .+..|+.+|++
T Consensus 329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~-~DP~~FARD~--------------hd~aQG~~~d~LqRLvPlLdS--- 390 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTLALVEPLVAS-LDPGRFARDA--------------HDYAQGRGPDDLQRLVPLLDS--- 390 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccchhhhhhhhhc-cCcchhhhhh--------------hhhhccCChHHHHHhhhhhhc---
Confidence 9999999888777777677776655555542 2222 11111 1111111 37888889873
Q ss_pred CChhHHHHHHHHHHHHhccC--CHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 234 SGHRVKENAVSALLNLVNFG--GERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~--~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.+...+++++++-.+... +...+..+.+ +-|+++.|-.+.++.+...-+.|...|+.+-+.
T Consensus 391 --~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFs-eIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 391 --NRLEAQCIGAFYLCAEAAIKSLQGKTKVFS-EIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred --chhhhhhhHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 455556666655422110 1112234444 368999999999998888888899999888664
No 48
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.44 E-value=3.6e-06 Score=64.57 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=120.5
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
+.+..||+-... ..+.+.++..+.-|.|.+-+|-|-.-+.+..++...++.|. .++..+.+-+.+.|+|+|-++.+.+
T Consensus 16 ~Ylq~LV~efq~-tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQT-TTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHH-hccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhccChHHHH
Confidence 346667776664 46778899999999999999999999999999999999995 5788889999999999999999999
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~ 293 (315)
.|.+++|+|..+..+.+. ....-..+..++.-++. +....+.++.. -.+++.+.+...+.+.+.+--|...|.-
T Consensus 94 ~I~ea~g~plii~~lssp---~e~tv~sa~~~l~~l~~-~~Rt~r~ell~--p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP---PEITVHSAALFLQLLEF-GERTERDELLS--PAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHhcCCceEEeecCCC---hHHHHHHHHHHHHHhcC-cccchhHHhcc--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999988864 55666677888888875 33245677776 4566666666666666666666666554
Q ss_pred H
Q 021242 294 L 294 (315)
Q Consensus 294 l 294 (315)
.
T Consensus 168 ~ 168 (173)
T KOG4646|consen 168 H 168 (173)
T ss_pred h
Confidence 3
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.43 E-value=2.5e-07 Score=56.88 Aligned_cols=40 Identities=43% Similarity=0.484 Sum_probs=37.8
Q ss_pred CchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 021242 37 DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLS 76 (315)
Q Consensus 37 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la 76 (315)
+++++..+++.|+||+|+++|++.++++++.|+++|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999986
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.41 E-value=3.3e-05 Score=73.41 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHH
Q 021242 105 SSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPL 182 (315)
Q Consensus 105 ~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L 182 (315)
+.+....++..+.+++. ...-+.-+... .++.+||.++. .++..+...++++|.|+.. ..+-+.++++.|+|..+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 45666667777777764 33223334333 44899999998 4477788899999999998 45678899999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcC-CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHH
Q 021242 183 FSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCC-GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEE 260 (315)
Q Consensus 183 ~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 260 (315)
..++. +++...+..++|+|+++... ++.++.-.... +...++.+..+. +..++|+|...|.|+.+. +......
T Consensus 467 ~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqeq~fqllRNl~c~-~~~svdf 541 (678)
T KOG1293|consen 467 ESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQEQCFQLLRNLTCN-SRKSVDF 541 (678)
T ss_pred HHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHHHHHHHHHHhhcC-cHHHHHH
Confidence 99995 67888999999999999874 43333332333 456666677765 899999999999999864 3233344
Q ss_pred HHH
Q 021242 261 VKE 263 (315)
Q Consensus 261 i~~ 263 (315)
+++
T Consensus 542 ll~ 544 (678)
T KOG1293|consen 542 LLE 544 (678)
T ss_pred HHH
Confidence 444
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=98.39 E-value=0.00015 Score=72.29 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=108.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
++.+.+.|.+.+|.+|..|+.++.++-..+++ .+.+.|.++.|.++|.+.++.++.+|+.+|..+.......+-...
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~ 218 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSN 218 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHH
Confidence 34455566677777888888777777655442 344567788888888888888888888888777654433232233
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
+.+..|+..+.. -++=.+.....+|.. ..+...... ..++..+...|+ +.++.+...|++++.++....
T Consensus 219 ~~~~~Ll~~L~e----~~EW~Qi~IL~lL~~--y~P~~~~e~---~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 219 EWVNRLVYHLPE----CNEWGQLYILELLAA--QRPSDKESA---ETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred HHHHHHHHHhhc----CChHHHHHHHHHHHh--cCCCCcHHH---HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcC
Confidence 445555565553 233344444444432 122221111 245677777777 457889999999999988642
Q ss_pred --CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 168 --LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 168 --~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
+....+. .-..++++.++. ++++++..++..+..+..
T Consensus 288 ~~~~~~~~~-~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 288 SQELIERCT-VRVNTALLTLSR--RDAETQYIVCKNIHALLV 326 (746)
T ss_pred CHHHHHHHH-HHHHHHHHHhhC--CCccHHHHHHHHHHHHHH
Confidence 2111111 122356666653 456677667666655543
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00035 Score=67.91 Aligned_cols=253 Identities=17% Similarity=0.155 Sum_probs=183.3
Q ss_pred hhhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCc------h----------hhHHHHh-CCCHHHHHHHHcCCCHHH
Q 021242 4 KRRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDA------E----------IRPMISE-AGSIPYLAEILYSSSHAF 64 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~------~----------~~~~i~~-~g~i~~Lv~lL~~~~~~~ 64 (315)
--.+.+++++-|+-. +++....++.++..+..+++ . ..+.+++ .+.|..|+.++..-|-.+
T Consensus 59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V 138 (970)
T KOG0946|consen 59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV 138 (970)
T ss_pred HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence 345678889988754 78999999999999987663 1 1234554 788999999999888899
Q ss_pred HHHHHHHHHhcCcccc---hh-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHH
Q 021242 65 QENAAATLLNLSITSR---DS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLI 140 (315)
Q Consensus 65 ~~~a~~~L~~la~~~~---~~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 140 (315)
|.+++..|.++-...+ +. ++..+-+|..|+.+|.+ ....+|-.+.-.|..|+.....-..++..+.++..|+
T Consensus 139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLf 214 (970)
T KOG0946|consen 139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLF 214 (970)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 9999999988766543 23 56688999999999996 5566777888888888876665554555456699999
Q ss_pred HHhhccCC-Ch--HHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcC--CCc---ch-------HHHHHHHHHH
Q 021242 141 EIIKTRNS-PL--RSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNG--GRA---GI-------VEDASAVIAQ 204 (315)
Q Consensus 141 ~ll~~~~~-~~--~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~--~~~---~~-------~~~a~~~L~~ 204 (315)
++++.. | .. -+...|+..|-||-.+ ..|...+.+.+-+|.|.++|... .+. .+ ...++.+++.
T Consensus 215 sIIeeE-Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~ 293 (970)
T KOG0946|consen 215 SIIEEE-GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS 293 (970)
T ss_pred HHHHhc-CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH
Confidence 999852 3 11 3568899999999984 56777888889999999888421 121 12 1236667776
Q ss_pred HhcC-------hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHH
Q 021242 205 IAGC-------EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 205 L~~~-------~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~ 263 (315)
|-.. ..+.+.+.+.+++..|..++.+. +...+++..++-++++..+.+. +...+...
T Consensus 294 lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~-~vp~dIltesiitvAevVRgn~-~nQ~~F~~ 357 (970)
T KOG0946|consen 294 LVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP-GVPADILTESIITVAEVVRGNA-RNQDEFAD 357 (970)
T ss_pred hcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC-CCcHhHHHHHHHHHHHHHHhch-HHHHHHhh
Confidence 6431 12334666677889999877764 2567888889999999887443 34344443
No 53
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=4.7e-06 Score=63.91 Aligned_cols=133 Identities=12% Similarity=0.096 Sum_probs=106.2
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
..+.+..|++=.+. ..+.+.++....-|.|++.++-|-..+.+. .+++..++-|. ..+...+.-+...|+|+|.
T Consensus 14 Rl~Ylq~LV~efq~---tt~~eakeqv~ANLANFAYDP~Nys~Lrql-~vLdlFvdsl~--e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQT---TTNIEAKEQVTANLANFAYDPINYSHLRQL-DVLDLFVDSLE--EQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHhhccCcchHHHHHHh-hHHHHHHHHhh--cccHHHHHHhHHHHHhhcc
Confidence 34456777777765 368899998888889999888888888875 55899999998 5578889999999999999
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhh
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
++.|++.|++++++|..+..+. +|.......++..+..|+.. ...|.++.. |.+++.+.
T Consensus 88 d~~n~~~I~ea~g~plii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 9999999999999999999985 56666777889999999774 445666654 55555544
No 54
>PF05536 Neurochondrin: Neurochondrin
Probab=98.28 E-value=5.3e-05 Score=73.19 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=137.4
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc----hhhhhhccccHHHHHHHhhccC-----CChHHHHHHHH
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY----RPIIGAKRDIIHSLIEIIKTRN-----SPLRSVKDALK 158 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~ 158 (315)
..++..+.+|+. .+++-+..+...+..+...++. +..+.+.-| .+.|-.+|++.. +......-|+.
T Consensus 5 ~~l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 5 ASLEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 457778899986 4556667777788888754332 334556567 688889998521 12345667999
Q ss_pred HHHHhccCCCcH--HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCCh
Q 021242 159 ALFGIALYPLNR--YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 159 aL~~Ls~~~~~~--~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~ 236 (315)
.|+.+|++|+.. .+++ +-||.+++.+.+.++..+...|+.+|..++..++|++.+.+.|+++.|.+.+.+ .+
T Consensus 80 vL~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~ 153 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QS 153 (543)
T ss_pred HHHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----Cc
Confidence 999999988765 4554 789999999975444488999999999999999999999999999999999986 57
Q ss_pred hHHHHHHHHHHHHhccCCHHH----HHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 237 RVKENAVSALLNLVNFGGERA----AEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~~~----~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
..++.+..++.+++....... ...+ ..+++.+...........|-.+..+|..+
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l----~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLL----HSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHH----HHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 889999999999886543211 1222 12456666666555445555555555555
No 55
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3e-05 Score=67.58 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=129.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR 170 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~ 170 (315)
-.++.++.+ .+|.++..|...+.+|+.. ..+.....+...++.+..++.. .++ ...|+.+|.|++.++..+
T Consensus 6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~--~~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 6 VELVELLHS----LSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD--LDP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHHhcc----CChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC--ccc--ccHHHHHHHHHHhhHHHH
Confidence 456778886 6889999999888888866 5566555555668889999883 233 578999999999999999
Q ss_pred HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh--c----CCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 171 YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK--C----CGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 171 ~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~----~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
+.+++. .+..++..+. ++..++.+.++.+|+||++.+.....+.. . .++..++...-+.......--.+...
T Consensus 77 ~~ll~~-~~k~l~~~~~-~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLT-DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHH-HHHHHHHHhc-CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 999887 7777777775 56678889999999999998776665532 1 46666666554321111122334667
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
++.||++... .+......+.-..++|..+-+.++...|...+.+|+|+
T Consensus 155 vf~nls~~~~--gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~ 202 (353)
T KOG2973|consen 155 VFANLSQFEA--GRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNC 202 (353)
T ss_pred HHHHHhhhhh--hhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhh
Confidence 8899987643 44555542222234444444434555556666677764
No 56
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00049 Score=69.46 Aligned_cols=258 Identities=16% Similarity=0.129 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCC--C--------------HHHHHHHHHHHHhcCcccc
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSS--S--------------HAFQENAAATLLNLSITSR 80 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~--------------~~~~~~a~~~L~~la~~~~ 80 (315)
+..+|..|+..|..++...+.-.+.... .-.++.++.+.... | ..--..|.++|-.+|.+-.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 5689999999999998775443333333 33355566655321 1 1134567777777777644
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
.+.+ -+-..+.+-.++++ .+..-|..+..+|..++.... +.+...-..+++..+..|. +.+|.++..|+.++
T Consensus 342 g~~v-~p~~~~~l~~~l~S----~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~nai 413 (1075)
T KOG2171|consen 342 GKQV-LPPLFEALEAMLQS----TEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAI 413 (1075)
T ss_pred hhhe-hHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHH
Confidence 3222 22356777777876 566667777666666553211 2222222344555666667 44889999999999
Q ss_pred HHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHh---cCCHHHHHH-HhhcCCC
Q 021242 161 FGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKK---CCGIGVLVD-LLDLGTG 233 (315)
Q Consensus 161 ~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~---~~~i~~Lv~-ll~~~~~ 233 (315)
..++.+ |+..++ -..-.++.|+..+.+..+..++..|+..+-|++. ++ +.+++ -+.+..++. +++++
T Consensus 414 gQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---~~~l~pYLd~lm~~~l~~L~~~~-- 487 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---KSILEPYLDGLMEKKLLLLLQSS-- 487 (1075)
T ss_pred HhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhcCC--
Confidence 999984 333333 3456677888888644566788888888887754 32 22221 112332444 34444
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCC-HHHHHHHHHHHHHHh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGS-AKGKTKAVALLKILV 295 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~-~~~k~~A~~~L~~l~ 295 (315)
++.++++++.++..++.... ...+.|-.-..|.|..++++.+ +..|.-..+.+.+++
T Consensus 488 -~~~v~e~vvtaIasvA~AA~----~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 488 -KPYVQEQAVTAIASVADAAQ----EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred -chhHHHHHHHHHHHHHHHHh----hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 89999999999999986432 2344333457888999999864 777776666666554
No 57
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.23 E-value=0.00011 Score=66.59 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=161.5
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc-hhhhhh
Q 021242 11 LVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSR-DSLMST 86 (315)
Q Consensus 11 Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~-~~~i~~ 86 (315)
|-..+++ .+.+...-++++|..+... +++|..++.++++..++..+.+ .+-.+|=..+-++|-|++++. -+.+..
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~ 239 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR 239 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh
Confidence 3344444 4568888999999999977 6899999998889999988843 345677788899999999986 455567
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-------chhhhhhccccHHHHHHHhhccC-CChHHHHH---
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-------YRPIIGAKRDIIHSLIEIIKTRN-SPLRSVKD--- 155 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-------~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~~--- 155 (315)
-+.|+.|..++++ +..+.+...++.+++||....+ ....+.. ++ ++.-++.|+... .|+++...
T Consensus 240 ~~li~~L~~Ivk~---~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~-v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 240 FDLIQDLSDIVKE---STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CK-VLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cC-chHHHHHHHhcCCCcHHHHHHHHH
Confidence 8899999999996 2455566788899999986552 2345555 36 677777776321 23333211
Q ss_pred ----HHHHHHHhccC------------------------CCcHHHHHhh--CCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 156 ----ALKALFGIALY------------------------PLNRYQVIAL--GGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 156 ----a~~aL~~Ls~~------------------------~~~~~~i~~~--g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
--.....||+. .+|...+-+. ..+..|+.+|..+.++.+..-||-=+...
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 11112222321 2344444432 56888999997544455555566555555
Q ss_pred hc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 206 AG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 206 ~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
-. .|+|+..+.+.||=..+..+|.+. +++++.+|+.++..+-
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~---d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHE---DPEVRYHALLAVQKLM 437 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCC---CchHHHHHHHHHHHHH
Confidence 44 699999999999999999999986 8999999999887764
No 58
>PF05536 Neurochondrin: Neurochondrin
Probab=98.23 E-value=0.00019 Score=69.41 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=157.1
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch---hhHHHHhCCCHHHHHHHHcC-------CCHHHHHHHHHHH
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE---IRPMISEAGSIPYLAEILYS-------SSHAFQENAAATL 72 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L 72 (315)
.....+.+.+.+|++.+-+.|..++-.+.++.+.++. .++.+.++=+.+-|-++|++ +....+.-|+.+|
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999878899999999999987663 34568887778888899976 2245788899999
Q ss_pred HhcCcccc----hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCC
Q 021242 73 LNLSITSR----DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS 148 (315)
Q Consensus 73 ~~la~~~~----~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 148 (315)
..++..++ .+++ +-||.|+..+.+. +..++...+..+|..++.+++++..+.+.++ ++.|+..+.+
T Consensus 82 ~~f~~~~~~a~~~~~~---~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~-v~~L~ei~~~--- 151 (543)
T PF05536_consen 82 AAFCRDPELASSPQMV---SRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGA-VPALCEIIPN--- 151 (543)
T ss_pred HHHcCChhhhcCHHHH---HHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCC-HHHHHHHHHh---
Confidence 99998764 2333 4699999999862 3347888999999999999999999998655 9999999983
Q ss_pred ChHHHHHHHHHHHHhccCCCcH-----HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh--HHHHHhcCC-
Q 021242 149 PLRSVKDALKALFGIALYPLNR-----YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES--VDEFKKCCG- 220 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~~~~-----~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~~- 220 (315)
.+.....|+.+|.+++...... ...+ ...++.+-..+. ..+...+...+..|..+-...+. .........
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs-~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFS-SFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHH-hhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4566788999999988743311 0100 133444444443 22334455667777766332210 111111111
Q ss_pred ---HHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 221 ---IGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 221 ---i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
..-+..++++. ..+..+..+..+...+..
T Consensus 230 ~~l~~gl~~iL~sr--~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 230 SDLRKGLRDILQSR--LTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Confidence 23333455543 456666666655555543
No 59
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0006 Score=68.26 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=166.0
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhh
Q 021242 9 RSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMST 86 (315)
Q Consensus 9 ~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~ 86 (315)
+-+...|. .+++.+|.-|+..+..+.. +.+.-..+++.|++..|+.+|.| -|+.++.++.+|+.|+.+.+ -+...+
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 34444454 3467899999998887764 46788889999999999999964 58899999999999999887 233348
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc--h--------------hhhhhccccHHHHHHHhhccCCCh
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY--R--------------PIIGAKRDIIHSLIEIIKTRNSPL 150 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~--~--------------~~i~~~~g~i~~Lv~ll~~~~~~~ 150 (315)
.|++.-+.+++-. ..+++.+..++..+..|...+-. | ..+++ + -+.-|++++..+++|
T Consensus 1852 hg~l~yil~~~c~---~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD--~-PEAaVH~fE~T~EnP 1925 (2235)
T KOG1789|consen 1852 HGGLMYILSILCL---TNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD--S-PEAAVHMFESTSENP 1925 (2235)
T ss_pred cCchhhhhHHHhc---cCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc--C-HHHHHHHHhccCCCc
Confidence 8888888888864 26788888888888888754321 1 12222 2 244555555322333
Q ss_pred HH------HHHHHHHHHHhc------------------------------------------------------------
Q 021242 151 RS------VKDALKALFGIA------------------------------------------------------------ 164 (315)
Q Consensus 151 ~~------~~~a~~aL~~Ls------------------------------------------------------------ 164 (315)
+. +...-..+..+.
T Consensus 1926 ELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LL 2005 (2235)
T KOG1789|consen 1926 ELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELL 2005 (2235)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHH
Confidence 22 111111111111
Q ss_pred ----------------------------c-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHH
Q 021242 165 ----------------------------L-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEF 215 (315)
Q Consensus 165 ----------------------------~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 215 (315)
+ +|.....+-..|-+|-++..+. ..+..+-..|+.+|+.|+.+....+++
T Consensus 2006 ek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~-~~n~s~P~SaiRVlH~Lsen~~C~~AM 2084 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC-LQNTSAPRSAIRVLHELSENQFCCDAM 2084 (2235)
T ss_pred HHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH-hcCCcCcHHHHHHHHHHhhccHHHHHH
Confidence 0 1111222222344444444443 112233356889999999999999999
Q ss_pred HhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh
Q 021242 216 KKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN 278 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~ 278 (315)
.+...+..++..++. -+....-|+.+|..+.....++....+++ .|.+|.|+.+++.
T Consensus 2085 A~l~~i~~~m~~mkK----~~~~~GLA~EalkR~~~r~~~eLVAQ~LK--~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKK----QPSLMGLAAEALKRLMKRNTGELVAQMLK--CGLVPYLLQLLDS 2141 (2235)
T ss_pred hccccchhhHHHHHh----cchHHHHHHHHHHHHHHHhHHHHHHHHhc--cCcHHHHHHHhcc
Confidence 888877778887774 34455588899999887655555566666 8999999999874
No 60
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0012 Score=60.46 Aligned_cols=243 Identities=18% Similarity=0.201 Sum_probs=169.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc---------hhhHHHHhCCCHHHHHHHHcCCCHH------HHHHH
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA---------EIRPMISEAGSIPYLAEILYSSSHA------FQENA 68 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~g~i~~Lv~lL~~~~~~------~~~~a 68 (315)
+=.+++.|+++|.+.+-++-...+..+..++..+. .--..+++.++++.|+.-+..=|.+ -..++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34678999999999999999999999999986542 1245788899999999988653333 34456
Q ss_pred HHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhc
Q 021242 69 AATLLNLSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKT 145 (315)
Q Consensus 69 ~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~ 145 (315)
+.++-|+..-.+ ...+++.|.+.-|++-+... ..-...+..|..+|.-+-. .++++..++.-.| +..++.-+..
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k--~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G-iD~lL~~la~ 279 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK--AAFDANKQYASEILAILLQNSDENRKLLGPLDG-IDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc--cCcchhHHHHHHHHHHHhccCchhhhhhcCccc-HHHHHhhcch
Confidence 666667665443 34445666666666655421 1233457788888888875 4558888888778 8888876542
Q ss_pred c--CC-----ChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh---hhHHHH
Q 021242 146 R--NS-----PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE---ESVDEF 215 (315)
Q Consensus 146 ~--~~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~---~~~~~i 215 (315)
. ++ ..+..++-.-+|+.+-..++|+..++...++..+.-+++. ..-.+..++++|......+ +++..+
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am~g~~gt~~C~kf 357 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAMFGPEGTPNCNKF 357 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHHHHHHHHhCCCchHHHHHH
Confidence 1 11 2345677778888878899999999998888877777752 2334667999999987754 567788
Q ss_pred HhcCCHHHHHHHhh-cC------CCCChhHHHHHHHHHHHHhc
Q 021242 216 KKCCGIGVLVDLLD-LG------TGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~-~~------~~~~~~~~~~a~~~L~~l~~ 251 (315)
++..|...+..+.. .. ........++.+.+|+.+..
T Consensus 358 Ve~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 358 VEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 88888877777554 11 01234567788888888765
No 61
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.11 E-value=0.00067 Score=62.48 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=171.9
Q ss_pred HHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCH
Q 021242 28 AELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSS 106 (315)
Q Consensus 28 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~ 106 (315)
..|..+.+..+..|..+.-.-.++.+..++-+.+.+++-+|.++++-+..+.. -+.+.+.+.--.++.-|.... .+.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~ 82 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KND 82 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CCh
Confidence 34555666667677776666667777766656668899999999988777765 344556666666666665321 233
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHH
Q 021242 107 AAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSL 185 (315)
Q Consensus 107 ~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~l 185 (315)
.=++.|...++.+...+++...+- .|++..++.+.. ..++..+..|+.+|..++. +| ..+..+|+++.|++.
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae--~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAE--HEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRA 155 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHh--CCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHH
Confidence 447789999999887665555453 478999999999 4577899999999999997 44 345678999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC----CCCCh---hHHHHHHHHHHHHhccCCHHHH
Q 021242 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG----TGSGH---RVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 186 L~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~----~~~~~---~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
+. ++..++.+..+.++-.+-..|..|+-+...-.+..++.-+.+. ...+. ..+ ++..++..+-+.-++ .
T Consensus 156 l~-d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~G-L- 231 (371)
T PF14664_consen 156 LI-DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPG-L- 231 (371)
T ss_pred HH-hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCc-e-
Confidence 97 3444577888899999999999999775433466666644422 01122 333 344444444443322 1
Q ss_pred HHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 259 EEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 259 ~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
-..-.....+++.|++.+..+++++|+..-.++--+
T Consensus 232 l~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 232 LYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred eeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111121125788899999999999999888865444
No 62
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.10 E-value=7.1e-06 Score=50.29 Aligned_cols=41 Identities=34% Similarity=0.328 Sum_probs=37.5
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
++++++.+++.|++|.|+++|.++ +..++++|+++|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---CHHHHHHHHHHHHHHhC
Confidence 467899999999999999999976 99999999999999973
No 63
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.09 E-value=0.0014 Score=62.02 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=154.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-----CHHHHHHHHHHHHhcCcccc---hhhhhhcC
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-----SHAFQENAAATLLNLSITSR---DSLMSTRG 88 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~la~~~~---~~~i~~~~ 88 (315)
..++.+..+|+++|+|..-.++..|..+++.|..+.++..|+.. +.++.....++|+-++.... ++++.+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45679999999999999999999999999999999999999875 67888999999988876542 45666778
Q ss_pred chHHHHHHHhcCC------CC-------CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-------CC
Q 021242 89 LLDAISHVLRHHS------TS-------TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-------NS 148 (315)
Q Consensus 89 ~i~~L~~lL~~~~------~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~ 148 (315)
+++.+...|..+. .. ...+....+..+++|++........ ....+.++.|+.++... ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 8888877664220 00 1233455788999999864443322 11123367777665421 11
Q ss_pred ChHHHHHHHHHHHHhccCC-Cc-------HH----HHHhhCCcHHHHHHHhcC----CC-c--chHHHHHHHHHHHhcC-
Q 021242 149 PLRSVKDALKALFGIALYP-LN-------RY----QVIALGGVQPLFSLVVNG----GR-A--GIVEDASAVIAQIAGC- 208 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~-~~-------~~----~i~~~g~v~~L~~lL~~~----~~-~--~~~~~a~~~L~~L~~~- 208 (315)
.......+..+|.|+-... +. .. .-.....+..|+++|... .. . ......+.+|..++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 1245667888888873210 10 00 011234466677777431 11 1 2345577888888775
Q ss_pred hhhHHHHHh--------------cC-C-HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 209 EESVDEFKK--------------CC-G-IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 209 ~~~~~~i~~--------------~~-~-i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
...|+.+.. .| . -..|++++.+. .+.++..+...|+.||..+
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---CchHHHHHHHHHHHHHhhh
Confidence 555555543 13 2 57899999875 5899999999999998743
No 64
>PTZ00429 beta-adaptin; Provisional
Probab=98.08 E-value=0.002 Score=64.35 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=169.6
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch-
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD- 81 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~- 81 (315)
.|++-+..|-..|.+.+...+..|++.+...-....+. ..+.+.+++++.+.+.+++.-.-..|.+++...+.
T Consensus 29 ~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 29 TRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH
Confidence 35667788888898888888888887666554332211 23577788899999999998888888888765433
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.++ .+..+.+=+.+ +++.++..|.+++.++-. ...+ + -+++.+.+.+. +.++-+++.|+-++.
T Consensus 103 alL----aINtl~KDl~d----~Np~IRaLALRtLs~Ir~----~~i~-e--~l~~~lkk~L~--D~~pYVRKtAalai~ 165 (746)
T PTZ00429 103 ALL----AVNTFLQDTTN----SSPVVRALAVRTMMCIRV----SSVL-E--YTLEPLRRAVA--DPDPYVRKTAAMGLG 165 (746)
T ss_pred HHH----HHHHHHHHcCC----CCHHHHHHHHHHHHcCCc----HHHH-H--HHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 233 45566666665 688888888877776443 2222 2 23677777887 568999999999999
Q ss_pred Hhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 162 GIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 162 ~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
.+-. +++ .+.+.|.++.|.++|. ++++.+...|+.+|..+......+-. ...+.+..++..+... +++.|-
T Consensus 166 Kly~~~pe---lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~---~EW~Qi 237 (746)
T PTZ00429 166 KLFHDDMQ---LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPEC---NEWGQL 237 (746)
T ss_pred HHHhhCcc---cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcC---ChHHHH
Confidence 9876 332 2345688889999885 77889999999999999653222111 1233466777777643 788887
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
..+.+|....-.+ + .+. ...+..+...+++.++-|.-.|.+++-.+.
T Consensus 238 ~IL~lL~~y~P~~-~---~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 238 YILELLAAQRPSD-K---ESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHhcCCCC-c---HHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 7666665432111 1 122 225556666777777777777777655554
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.04 E-value=2.6e-05 Score=56.18 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=70.1
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 8 VRSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 8 i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
||.|++.| +++++.+|..++..|..+... .++|.|+.+++++++.++..|+++|..+ ..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i---------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRI---------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCC---------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHh---------CC
Confidence 68899999 888999999999999955321 3499999999999999999999999877 24
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L 116 (315)
...++.|.+++.+ ..+..++..|+.+|
T Consensus 61 ~~~~~~L~~~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC----SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHhhc
Confidence 5589999999986 24555677777766
No 66
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.02 E-value=0.0029 Score=58.32 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=118.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccc-hhhhh
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSR-DSLMS 85 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~-~~~i~ 85 (315)
+.+..++=+++.++|..|.+.++-+..+ +..-+.+.+.+.=..++.-|... +..=+++|++.+..+..-+. .+.+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~- 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI- 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC-
Confidence 3333344444489999999999988855 67788888877655556666442 33457889998877655432 2222
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
..+.+..++.+..+ .++..+..|..+|..++..++ ..+..+|| +..|++.+. ++..+.....+.++..+-.
T Consensus 106 ~~~vvralvaiae~----~~D~lr~~cletL~El~l~~P--~lv~~~gG-~~~L~~~l~--d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 106 PRGVVRALVAIAEH----EDDRLRRICLETLCELALLNP--ELVAECGG-IRVLLRALI--DGSFSISESLLDTLLYLLD 176 (371)
T ss_pred CHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHhhCH--HHHHHcCC-HHHHHHHHH--hccHhHHHHHHHHHHHHhC
Confidence 55678899999987 567889999999999997544 34456678 899999888 4566677888999999999
Q ss_pred CCCcHHHHHhhCCcHHHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLV 186 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL 186 (315)
+|+.|..+...--+..++.-+
T Consensus 177 ~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred CcchhhhhcCCccHHHHHHhh
Confidence 999998776433344444444
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.01 E-value=0.0015 Score=61.00 Aligned_cols=152 Identities=16% Similarity=0.019 Sum_probs=107.7
Q ss_pred hhHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
..++.|+..|. ..+++.+..++..+... .++. ++..|+..|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 46788889995 55677777666555432 2111 389999999988888999999999654
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
......+.|+.+|++ .++.++..+..++.. ... ...+.|..+|+ +.++.++..|+++|..+.
T Consensus 114 ~~~~a~~~L~~~L~~----~~p~vR~aal~al~~----------r~~--~~~~~L~~~L~--d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 114 GGRQAEPWLEPLLAA----SEPPGRAIGLAALGA----------HRH--DPGPALEAALT--HEDALVRAAALRALGELP 175 (410)
T ss_pred CchHHHHHHHHHhcC----CChHHHHHHHHHHHh----------hcc--ChHHHHHHHhc--CCCHHHHHHHHHHHHhhc
Confidence 366678888999986 677777666655544 111 22578888888 568899999999998865
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
. ..+++.|...+. +.++.++..|++.+..+-
T Consensus 176 ~----------~~a~~~L~~al~-d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 176 R----------RLSESTLRLYLR-DSDPEVRFAALEAGLLAG 206 (410)
T ss_pred c----------ccchHHHHHHHc-CCCHHHHHHHHHHHHHcC
Confidence 3 345555666664 567888888888887663
No 68
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.97 E-value=2.1e-05 Score=47.92 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=36.7
Q ss_pred chhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Q 021242 38 AEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 38 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~ 77 (315)
++++..+++.|+||+|++++++.+++++..|+++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3588899999999999999999999999999999999873
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0073 Score=58.51 Aligned_cols=262 Identities=14% Similarity=0.168 Sum_probs=169.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
|+--+.++.+|+++-|-+|.+|+..+..+.-.-|+. + --.+|.|++-|.++||.++-+|+.+++.||..+++..+
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 444567889999999999999999999887654542 2 23489999999999999999999999999988775543
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH--H
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF--G 162 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~--~ 162 (315)
..-|.+.++|..- .+.=...........|+- .-..++. -++++|..++.+ +.-..+.-.|..++. +
T Consensus 218 ---~LAP~ffkllttS---sNNWmLIKiiKLF~aLtp---lEPRLgK--KLieplt~li~s-T~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTS---SNNWVLIKLLKLFAALTP---LEPRLGK--KLIEPITELMES-TVAMSLLYECVNTVVAVS 285 (877)
T ss_pred ---cccHHHHHHHhcc---CCCeehHHHHHHHhhccc---cCchhhh--hhhhHHHHHHHh-hHHHHHHHHHHHHheeeh
Confidence 2457777888641 222223333344444443 2334554 458999999984 222344555666554 3
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
++..-.+....+ .-++.-|-.++. +.+..++-.++-+++-+.. +++..++. -..+++.|.+. +..++-.
T Consensus 286 ~s~g~~d~~asi-qLCvqKLr~fie-dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk---D~SIRlr 355 (877)
T KOG1059|consen 286 MSSGMSDHSASI-QLCVQKLRIFIE-DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK---DESIRLR 355 (877)
T ss_pred hccCCCCcHHHH-HHHHHHHhhhhh-cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC---CchhHHH
Confidence 333322222222 234556666675 5678888888877777765 44433333 25667788865 7889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHH-HHhhC-CHHHHHHHHHHHHHHhhCCCCCCc
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIAD-VAQNG-SAKGKTKAVALLKILVDDGNMNIT 303 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~-ll~~~-~~~~k~~A~~~L~~l~~~~~~~i~ 303 (315)
|+..|+.+.. .....+|++ .|.. +..++ +.-.-+....++..++.+.+.+|+
T Consensus 356 ALdLl~gmVs---kkNl~eIVk-------~LM~~~~~ae~t~yrdell~~II~iCS~snY~~It 409 (877)
T KOG1059|consen 356 ALDLLYGMVS---KKNLMEIVK-------TLMKHVEKAEGTNYRDELLTRIISICSQSNYQYIT 409 (877)
T ss_pred HHHHHHHHhh---hhhHHHHHH-------HHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhh
Confidence 9999999864 234455554 4543 33333 334445566678888877777664
No 70
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.85 E-value=0.00015 Score=52.19 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=69.2
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 50 IPYLAEIL-YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 50 i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
||.|++.| ++.++.++..++.+|..+. ....++.|+.++++ +++.++..++.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---------~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~i--------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---------DPEAIPALIELLKD----EDPMVRRAAARALGRI--------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---------HHHHHHHHHHHHTS----SSHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHh---------
Confidence 68999999 8889999999999998552 34569999999986 7899999999999876
Q ss_pred hhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
+. ...++.|.+++.++ .+..++..|..+|.
T Consensus 59 -~~-~~~~~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 -GD-PEAIPALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp -HH-HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred -CC-HHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 23 34589999999852 45566788888874
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.84 E-value=0.00027 Score=65.02 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=121.2
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
++.++..+| +..|+.++..++-...++..|.+.|-.+. ..+|+..+++.| +..++.+-......+.....+++|.++
T Consensus 173 CD~iR~~~~-lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGG-LDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccch-HHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 556666566 89999999976445567889999998844 578888888765 333333332223345677789999999
Q ss_pred hcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHH
Q 021242 206 AGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGK 284 (315)
Q Consensus 206 ~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k 284 (315)
-.+ ++..+.+++.||+..++-..+.. ++.+..+|.-+|.|++.++.....+.|++ ..+.+.|-.+..+.++..|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt---~P~lLRH~ALAL~N~~L~~~~a~qrrmve--Kr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRT---DPALLRHCALALGNCALHGGQAVQRRMVE--KRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccC---CHHHHHHHHHHhhhhhhhchhHHHHHHHH--hhhhhhhhhhhcchHHHHH
Confidence 884 78899999999998887777653 78888899999999988776677788988 6777888888777788888
Q ss_pred HHHHHHHHHH
Q 021242 285 TKAVALLKIL 294 (315)
Q Consensus 285 ~~A~~~L~~l 294 (315)
-.|+-....+
T Consensus 325 ~~AClAV~vl 334 (832)
T KOG3678|consen 325 LHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhh
Confidence 8877654443
No 72
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00087 Score=62.99 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=149.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh-hhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS-LMS 85 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~-~i~ 85 (315)
.+-|..+|+.+++++|..+=.++.++... -.+.....+ ...++.++.-+.++++.+|..|+.-+..+..-..+. +..
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 45678899999999997666666665433 122222223 677999999999999999999999888877665443 444
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHH---HHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSA---ATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~---~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
-+|.+..++..+.+. +...++..+. .-+..+......+.-+. -+..+..|.+.+. ++..+.+..++.-+..
T Consensus 289 ~s~il~~iLpc~s~~---e~~~i~~~a~~~n~~l~~l~s~~~~~~~id-~~~ii~vl~~~l~--~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 289 LSGILTAILPCLSDT---EEMSIKEYAQMVNGLLLKLVSSERLKEEID-YGSIIEVLTKYLS--DDREETRIAVLNWIIL 362 (675)
T ss_pred hhhhhhhcccCCCCC---ccccHHHHHHHHHHHHHHHHhhhhhccccc-hHHHHHHHHHHhh--cchHHHHHHHHHHHHH
Confidence 667777777777651 2212333222 22333333333333333 3566888888888 5577777777766666
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
|-....+..........+.|+.-|. +++..+...++.+++++|.++....- -..+..|+.+...+ ..-....+
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLs-d~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~---~~~l~~Rg 435 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLS-DRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKED---TKLLEVRG 435 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhc-CchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhh---hHHHHhhh
Confidence 6655555555455677888888884 67888999999999999987655411 11345556666543 45566667
Q ss_pred HHHHHHHhc
Q 021242 243 VSALLNLVN 251 (315)
Q Consensus 243 ~~~L~~l~~ 251 (315)
.-++.++|.
T Consensus 436 ~lIIRqlC~ 444 (675)
T KOG0212|consen 436 NLIIRQLCL 444 (675)
T ss_pred hHHHHHHHH
Confidence 777777775
No 73
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0004 Score=66.35 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=161.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+.-+|+++++.++++|.+|..|+.++-.+.-.. +...+.. .-.++.+..+-.+.++.+|.+.+.+|.-|-.-...++
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 356899999999999999999999998876442 2233333 5567777777788899999988888755543222222
Q ss_pred h-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh-ccccHHHHHHHhhccCCCh-----------
Q 021242 84 M-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA-KRDIIHSLIEIIKTRNSPL----------- 150 (315)
Q Consensus 84 i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~----------- 150 (315)
+ --.+.++-+++.-++ .+.++-..||.....++..+-.+..+.. -..+||.|+.-+..++.|.
T Consensus 251 ~phl~~IveyML~~tqd----~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQD----VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred ccchHHHHHHHHHHccC----cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 2 123455555555554 4667778899999999988866666543 1233444442211110110
Q ss_pred -------------------------------------------HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 151 -------------------------------------------RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 151 -------------------------------------------~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
..++..+.+|--| ..+.....++.++.+|+
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk 399 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLK 399 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHH
Confidence 0111111111111 12334566777777775
Q ss_pred cC-CCcch--HHHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 188 NG-GRAGI--VEDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 188 ~~-~~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
.. .+..+ +|.+.-+|..++. -+-+-++.+= -||-|+++|.+. .+-+|.-+||+|.+.++.-..+...+-.
T Consensus 400 ~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DK---kplVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 400 EHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDK---KPLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred HHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccC---ccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 33 23443 4444333333321 1122222211 368888888865 7888989999999876532111111111
Q ss_pred HHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCC
Q 021242 263 EMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 263 ~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.-++..|+..+-+++.+|++.|+..+..+-+..-.
T Consensus 475 ---~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 475 ---KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 12444555556678999999999999888776544
No 74
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00011 Score=68.41 Aligned_cols=272 Identities=13% Similarity=0.092 Sum_probs=163.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh---hh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS---LM 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~---~i 84 (315)
++.|++.|+.++..+.--+...++++.-.-..-+..+.+.|+|..|+.++.+.|..+|.+..|+|+++-.+.++. ..
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~ 512 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF 512 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence 567888888877667777888899988665667889999999999999999999999999999999998886532 23
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CC---chhhhhhccc---cHHHHHHHhhccCCChHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DS---YRPIIGAKRD---IIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~---~~~~i~~~~g---~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
...-++..++++..+ +.-.++.....+|+|++++ .. .+..+-.... +...|++.++. ..+..+ ...+
T Consensus 513 Lakig~~kvl~~~ND----pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~-~np~~i-~~~~ 586 (743)
T COG5369 513 LAKIGVEKVLSYTND----PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE-NNPMEI-LEGC 586 (743)
T ss_pred HHhcCHHHHHHHhcC----cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh-cCchhh-hhhH
Confidence 466789999999986 5667888999999999972 22 3444433212 23444455552 233444 4446
Q ss_pred HHHHHhccCCCcHHHHH-h-hCCcHHHHHHHhcC-CC-------c--chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHH
Q 021242 158 KALFGIALYPLNRYQVI-A-LGGVQPLFSLVVNG-GR-------A--GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLV 225 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~-~-~g~v~~L~~lL~~~-~~-------~--~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv 225 (315)
-.|.+++..+++...++ + ...+..+...|.+. .. . .+.-.-..+..++..+ +++....+
T Consensus 587 yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~---------~d~f~r~~ 657 (743)
T COG5369 587 YILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN---------SDKFKRLV 657 (743)
T ss_pred HHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc---------ccccccce
Confidence 66666666666665554 3 35555555555321 00 0 0111111222223221 12222211
Q ss_pred H------HhhcC-CCCChhHHHHHHHHHHHHhcc--CCH-----HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 226 D------LLDLG-TGSGHRVKENAVSALLNLVNF--GGE-----RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 226 ~------ll~~~-~~~~~~~~~~a~~~L~~l~~~--~~~-----~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
. ..... +..+.+.-....|+..++.-. +.+ ..+..++. ..|.-..|+.+..++++.||+++..+|
T Consensus 658 ~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~-~~G~~e~l~k~q~~~Sl~vrek~~taL 736 (743)
T COG5369 658 LTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC-ANGIREWLVKIQAKDSLIVREKIGTAL 736 (743)
T ss_pred ecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH-HccHHHHHHHHhccCcHHHHHHHHHHH
Confidence 1 11111 011233444555555554311 111 12344555 245555555666678999999999998
Q ss_pred HHHh
Q 021242 292 KILV 295 (315)
Q Consensus 292 ~~l~ 295 (315)
-+++
T Consensus 737 ~~l~ 740 (743)
T COG5369 737 ENLR 740 (743)
T ss_pred Hhhh
Confidence 7664
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.0084 Score=57.17 Aligned_cols=278 Identities=12% Similarity=0.141 Sum_probs=161.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHH-HHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN-AAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~-a~~~L~~la~~~~~~~i 84 (315)
...+.+.+.+.+.....|..|...++-+.+. ..-..+.+.+.+..|-..+.+......+. +..+.-....+-. --
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--~~ 209 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--PP 209 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC--CC
Confidence 3445666777777778888888888888755 34566677888888888887654433322 2222211111111 11
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.+++.++.+..+|.+.+. ....++..+..+...+.. .+... ...++|.++.-+.. .....+..++..|..+
T Consensus 210 ~EPyiv~~lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~~a-----VK~llpsll~~l~~--~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGD-KINKVREAAVEAAKAIMRCLSAYA-----VKLLLPSLLGSLLE--AKWRTKMASLELLGAM 281 (569)
T ss_pred CCchHHhhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCcch-----hhHhhhhhHHHHHH--HhhhhHHHHHHHHHHH
Confidence 245556666666653211 345667666666655542 22211 12345666655542 2456677888888888
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh--HH---------------------------H
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES--VD---------------------------E 214 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~--~~---------------------------~ 214 (315)
+..........-..++|.+.+.|- +.++++++.+-.+|..+++.-++ .+ .
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~-DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~tt 360 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLW-DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATT 360 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHc-cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhccee
Confidence 876555555566789999999994 67888888888888776532111 11 1
Q ss_pred HH---hcCCHHHHHHHhhcCC-CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 215 FK---KCCGIGVLVDLLDLGT-GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 215 i~---~~~~i~~Lv~ll~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
|+ +...+..++.+++.+. ..+...+..++.+++|+|..-.|. +.+..+---.+|-|-..+.+..|++|.-|.+.
T Consensus 361 FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp--~~lapfl~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 361 FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP--KDLAPFLPSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH--HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHH
Confidence 11 1112344444444331 125667888999999999754332 23322001244555556666689999999998
Q ss_pred H-HHHhhCC
Q 021242 291 L-KILVDDG 298 (315)
Q Consensus 291 L-~~l~~~~ 298 (315)
| ..+.+-+
T Consensus 439 L~~l~e~~g 447 (569)
T KOG1242|consen 439 LGALLERLG 447 (569)
T ss_pred HHHHHHHHH
Confidence 8 4444433
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0053 Score=58.14 Aligned_cols=263 Identities=16% Similarity=0.143 Sum_probs=133.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
.|.|-.+|++.-..++.++++.+..++..+. -..+. ...+..|-.+|++.....|..|.++|-.++...+.++....
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 4566677777777899999999999986641 11222 23477888888888889999999999999876543322111
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
--++ +++.+ .+..+...|..+|.. ++++++-..+.. - |+..++=++ ++-.-+...|++.|+++- |
T Consensus 343 ~evE---sLIsd----~Nr~IstyAITtLLK-TGt~e~idrLv~--~-I~sfvhD~S--D~FKiI~ida~rsLsl~F--p 407 (898)
T COG5240 343 KEVE---SLISD----ENRTISTYAITTLLK-TGTEETIDRLVN--L-IPSFVHDMS--DGFKIIAIDALRSLSLLF--P 407 (898)
T ss_pred hhHH---HHhhc----ccccchHHHHHHHHH-cCchhhHHHHHH--H-HHHHHHhhc--cCceEEeHHHHHHHHhhC--c
Confidence 1222 22222 122222223222222 233333333322 1 333333333 111112223333333222 1
Q ss_pred CcHH--------HHHhhCC-------cHHHHHHHhcCCCcchHHHHHHHHHHHhc-Ch--hhHHHHH----hcC------
Q 021242 168 LNRY--------QVIALGG-------VQPLFSLVVNGGRAGIVEDASAVIAQIAG-CE--ESVDEFK----KCC------ 219 (315)
Q Consensus 168 ~~~~--------~i~~~g~-------v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~--~~~~~i~----~~~------ 219 (315)
.-+. .+.+.|+ +..+.+++. ..+..++.|+..|+..-. ++ ...-.|. ++|
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P 485 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP 485 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc
Confidence 1111 1122333 223334432 133445555555544311 11 1111110 011
Q ss_pred C--HHHHHH-HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 220 G--IGVLVD-LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 220 ~--i~~Lv~-ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+ |..+.. ++- .+..++..|+.+|..++..-++. ... ..+...|-+++.+.+.++|+.|..+|++++.
T Consensus 486 ~~yvrhIyNR~iL----EN~ivRsaAv~aLskf~ln~~d~----~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 486 GKYVRHIYNRLIL----ENNIVRSAAVQALSKFALNISDV----VSP--QSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred chHHHHHHHHHHH----hhhHHHHHHHHHHHHhccCcccc----ccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 1 222222 111 15577888888887776544332 222 3345566788999999999999999999986
Q ss_pred CCCC
Q 021242 297 DGNM 300 (315)
Q Consensus 297 ~~~~ 300 (315)
...+
T Consensus 556 ~da~ 559 (898)
T COG5240 556 SDAC 559 (898)
T ss_pred hhhh
Confidence 5544
No 77
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.018 Score=52.97 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=165.9
Q ss_pred HHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc---c--h---hh---hhhcCchHHHH
Q 021242 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS---R--D---SL---MSTRGLLDAIS 94 (315)
Q Consensus 26 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~---~--~---~~---i~~~~~i~~L~ 94 (315)
.+..+..+|.- |.-...+++.++++.|+.+|.+.+.++-.+.+..|..++-.+ + . .+ .++.+.++.|+
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 44555556644 677778999999999999999999999999999999998654 1 1 22 34778889998
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CCcH
Q 021242 95 HVLRHHS--TSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNR 170 (315)
Q Consensus 95 ~lL~~~~--~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~ 170 (315)
+-+..-. .-............+-|+...+ ..+..+++. |++.-|+.-+.....-..-..+|...|.-+-.+ .+++
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 8886311 0011123346777888888655 456666664 766666663331112234567788888877774 4578
Q ss_pred HHHHhhCCcHHHHHHHh----cCC----CcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 171 YQVIALGGVQPLFSLVV----NGG----RAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 171 ~~i~~~g~v~~L~~lL~----~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
...-...++..+++-+. ++| ..++.++....|+.+-..+++|..|....|+.-..-+++. ....+..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----Kk~sr~Sa 337 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----KKVSRGSA 337 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----HHHhhhhH
Confidence 88888899999887772 122 2245666777777777789999999998898877777774 45667778
Q ss_pred HHHHHHHhccCCH-HHHHHHHHHccCcHHHHHH-HHhhC
Q 021242 243 VSALLNLVNFGGE-RAAEEVKEMAMQVADGIAD-VAQNG 279 (315)
Q Consensus 243 ~~~L~~l~~~~~~-~~~~~i~~~~~g~~~~L~~-ll~~~ 279 (315)
..+|......... ..+...++ .++++.+-. .++.+
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe--~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVE--ILGLRTIFPLFMKTP 374 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHH--HHhHHHHHHHHhhCc
Confidence 8888877653221 45667776 666666653 34433
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.022 Score=50.57 Aligned_cols=290 Identities=11% Similarity=0.078 Sum_probs=174.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchh----hHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEI----RPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~- 80 (315)
...|.|-.-|..++..++.-++..+..+..+.+.| ...++.+|..+.++..+...|.++..+|...+..++..+.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 33444555556667778888888888887665432 3355679999999999999999999999999999987764
Q ss_pred hhhhhhcCchHHHHHH---HhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 81 DSLMSTRGLLDAISHV---LRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~l---L~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
-..+...+..+.+-.. .+. +.-.+......+-.+.+ +++..... ...|++..|..=++- +.|.-+..++
T Consensus 162 leaiFeSellDdlhlrnlaakc-----ndiaRvRVleLIieifSiSpesanec-kkSGLldlLeaElkG-teDtLVianc 234 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKC-----NDIARVRVLELIIEIFSISPESANEC-KKSGLLDLLEAELKG-TEDTLVIANC 234 (524)
T ss_pred HHHhcccccCChHHHhHHHhhh-----hhHHHHHHHHHHHHHHhcCHHHHhHh-hhhhHHHHHHHHhcC-CcceeehhhH
Confidence 3333355555444222 221 22344455555666554 44433333 335777777776652 3466677889
Q ss_pred HHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcch-HHHHHHHHHHH----hcChhhHHHHHhc--CCHHHHHHHhh
Q 021242 157 LKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGI-VEDASAVIAQI----AGCEESVDEFKKC--CGIGVLVDLLD 229 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~-~~~a~~~L~~L----~~~~~~~~~i~~~--~~i~~Lv~ll~ 229 (315)
+.....|+-....+..+-+.|.+..+-..+...+..+. ...++.....+ +.-+-.-+++++. ..|...+.++.
T Consensus 235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 99999999888899998899999998888853222333 22233333222 2211112233322 13555566666
Q ss_pred cCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHH-HHHHHHHHHHhhCCCC---CCccc
Q 021242 230 LGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGK-TKAVALLKILVDDGNM---NITMT 305 (315)
Q Consensus 230 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k-~~A~~~L~~l~~~~~~---~i~~~ 305 (315)
.. ++..++.|+.++..+..... .+..+..++--..++++.=.-+.+...+ +.|...|..+++.... +|+.+
T Consensus 315 mn---DpdaieaAiDalGilGSnte--GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDg 389 (524)
T KOG4413|consen 315 MN---DPDAIEAAIDALGILGSNTE--GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDG 389 (524)
T ss_pred cC---CchHHHHHHHHHHhccCCcc--hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhcccc
Confidence 54 78999999999999864322 2234444111235555533333333333 3444567777665333 46664
Q ss_pred hH
Q 021242 306 NE 307 (315)
Q Consensus 306 ~~ 307 (315)
..
T Consensus 390 ka 391 (524)
T KOG4413|consen 390 KA 391 (524)
T ss_pred HH
Confidence 43
No 79
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.58 E-value=0.011 Score=56.08 Aligned_cols=267 Identities=16% Similarity=0.137 Sum_probs=163.7
Q ss_pred HHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----------cCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHH
Q 021242 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----------YSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAI 93 (315)
Q Consensus 26 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L 93 (315)
|+.+|+-+.. ++.+...+....++..|+++- ...+..+...|+++|.|+-+... +....+.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777764 467777777777788877776 23467899999999999998875 5666789999999
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc--------C-------CChHHHHHH
Q 021242 94 SHVLRHHST-STSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR--------N-------SPLRSVKDA 156 (315)
Q Consensus 94 ~~lL~~~~~-~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~--------~-------~~~~~~~~a 156 (315)
+..|+.... ..+.+......+.|+-++. ..+.+..+.+..+.+..++..|..+ . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 999986321 1256777888899988885 5555655555434478777766532 1 133456789
Q ss_pred HHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC-----CCc---chHHHHHHHHHHHhcChhhHHH----------HH--
Q 021242 157 LKALFGIALYPLNRYQVIALGGVQPLFSLVVNG-----GRA---GIVEDASAVIAQIAGCEESVDE----------FK-- 216 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~-----~~~---~~~~~a~~~L~~L~~~~~~~~~----------i~-- 216 (315)
++++.|+..+......-...+.++.++.++..- +.. +..-.+..+|.|+-. ..... +.
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~ 237 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPE 237 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCC
Confidence 999999987433222112245555555554321 122 234445556665521 11111 11
Q ss_pred --hcCCHHHHHHHhhcCCC--CC---hhHHHHHHHHHHHHhccCCHHHHHHHHH--------------HccCcHHHHHHH
Q 021242 217 --KCCGIGVLVDLLDLGTG--SG---HRVKENAVSALLNLVNFGGERAAEEVKE--------------MAMQVADGIADV 275 (315)
Q Consensus 217 --~~~~i~~Lv~ll~~~~~--~~---~~~~~~a~~~L~~l~~~~~~~~~~~i~~--------------~~~g~~~~L~~l 275 (315)
....+..|+.+|...-. .. ...-.-.+.+|..++... ...++.+-. .+...-..|+++
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 11136777877753200 01 122233566677777643 234444432 134557889999
Q ss_pred HhhCCHHHHHHHHHHHHHHhh
Q 021242 276 AQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 276 l~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+..+.+|..++.+|=.|.+
T Consensus 317 mt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHh
Confidence 999889999999998866653
No 80
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.55 E-value=0.0038 Score=49.89 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=95.5
Q ss_pred hhhccccHHHHHHHhhccCC----ChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCC-CcchHHHHHHHHH
Q 021242 129 IGAKRDIIHSLIEIIKTRNS----PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIA 203 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~-~~~~~~~a~~~L~ 203 (315)
+-..+| +..|++++++... ..+....++.++..|..+.-.-=..++...+...+.++.... +.++...++.+|.
T Consensus 7 FI~~~G-l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 7 FISRDG-LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHhccC-HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 334468 8999999994311 126677889999888875543334556666777788886433 6788999999999
Q ss_pred HHhcChhh-HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHH
Q 021242 204 QIAGCEES-VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 204 ~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~ 263 (315)
++..+... .+.+.++=-++.|+.+|+.. +..++.++...+..|....++..+++|.+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99776555 55454433599999999975 88999999999999987666556667754
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.50 E-value=0.051 Score=49.42 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=108.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
..++.+++.+.+.++.+|..|...+..+.. .-++|.+..++.+.++.++..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc---------C
Confidence 467888888888888888888888555543 23599999999999999999999988776 2
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH------------HH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR------------SV 153 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~------------~~ 153 (315)
.+..++.|+.++.. ..+..++..++++|..+-. ... +.+|+..+.+ .... ++
T Consensus 103 ~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~----------~~a-~~~l~~~l~~--~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 103 DPEAVPPLVELLEN---DENEGVRAAAARALGKLGD----------ERA-LDPLLEALQD--EDSGSAAAALDAALLDVR 166 (335)
T ss_pred ChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCc----------hhh-hHHHHHHhcc--chhhhhhhhccchHHHHH
Confidence 56689999999984 1567788888888887432 223 7788888773 2321 22
Q ss_pred HHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q 021242 154 KDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
..+..+|..+ -..-.++.+..++. +++..++..+...|..+...
T Consensus 167 ~~a~~~l~~~----------~~~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 167 AAAAEALGEL----------GDPEAIPLLIELLE-DEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHc----------CChhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcc
Confidence 2222222221 12345677788885 45566777787787777554
No 82
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.49 E-value=0.028 Score=49.76 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHhcCcccc-hhh-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHH
Q 021242 61 SHAFQENAAATLLNLSITSR-DSL-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHS 138 (315)
Q Consensus 61 ~~~~~~~a~~~L~~la~~~~-~~~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~ 138 (315)
++-.+--|+++|.++....+ +.+ ..+..+-..++.++++. -+..+.+-++.-++|.|+..+.....+..--..|.-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~--vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNY--VGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44467779999999999876 333 34555777888999853 256788889999999999988776555443355778
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHhcc-CC-CcHHHHHhhCCcHHHHHHHhcC--CCcchHHH---HHHHHHH----Hh-
Q 021242 139 LIEIIKTRNSPLRSVKDALKALFGIAL-YP-LNRYQVIALGGVQPLFSLVVNG--GRAGIVED---ASAVIAQ----IA- 206 (315)
Q Consensus 139 Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~-~~~~~i~~~g~v~~L~~lL~~~--~~~~~~~~---a~~~L~~----L~- 206 (315)
|+.+++. ....++.+-++..+.|++. .| .....+.-.|-+..-++.|... .+++++.. .-..|-+ ||
T Consensus 240 li~iVk~-~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 240 LIAIVKE-RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 8888874 2445777889999999887 33 3334455556555556666432 23333221 2222221 11
Q ss_pred -----------------------cChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHH
Q 021242 207 -----------------------GCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEV 261 (315)
Q Consensus 207 -----------------------~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i 261 (315)
.+..+.+.+.+.. .+..|.++++... .+..++ -||.=+.++....+ +....+
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~-~nt~i~-vAc~Di~~~Vr~~P-E~~~vl 395 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNN-PNTWIC-VACSDIFQLVRASP-EINAVL 395 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCC-CCceEe-eeHhhHHHHHHhCc-hHHHHH
Confidence 1223445554433 3688888888652 233444 34444555555443 443445
Q ss_pred HHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 262 KEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 262 ~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.. -|+-+.+.+++.++++++|-.|..+++.+-
T Consensus 396 ~K--yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SK--YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HH--hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 44 899999999999999999999999888763
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.48 E-value=0.0011 Score=56.82 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccC--chhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh-hhhcCch
Q 021242 16 GSVSEQTRAEALAELRLLSKHD--AEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-MSTRGLL 90 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-i~~~~~i 90 (315)
.+.+.+.|..|+..|..+...+ ......+.+ ...++.+...+.+....+...|+.++..++..-.... -.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998776 233333333 2566777777777677788999999988887654322 1133467
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhcccc-HHHHHHHhhccCCChHHHHHHHHHHHHhccCCC-
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDI-IHSLIEIIKTRNSPLRSVKDALKALFGIALYPL- 168 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~- 168 (315)
|.|+..+.+ +...++..|..+|..+...-... ..+ ++.+...+. +.++.++..++..|..+...-.
T Consensus 97 ~~Ll~~~~~----~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 97 PPLLKKLGD----SKKFIREAANNALDAIIESCSYS------PKILLEILSQGLK--SKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHGGG-------HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHcc----ccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccc
Confidence 888888876 56678888889999887643310 122 455555666 5689999999988888765322
Q ss_pred cHHHHHh----hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 169 NRYQVIA----LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 169 ~~~~i~~----~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
....+-. ...++.+..++. |+++++++.|-.++..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYS 206 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
Confidence 1111111 346677788885 7889999998888888854
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0033 Score=60.29 Aligned_cols=232 Identities=16% Similarity=0.070 Sum_probs=146.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC---C----
Q 021242 53 LAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD---S---- 124 (315)
Q Consensus 53 Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~---~---- 124 (315)
|..+..+.|..++..|+..|..|+..-. .+. .....++.+++ ...+++..|...++-.+... .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 7777788888888888888888775322 121 34455677775 56677777766666655321 0
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CC------------------------------------
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YP------------------------------------ 167 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~------------------------------------ 167 (315)
+...+.+ .++..+.+.+. +.+..++..|+++|..+-. +.
T Consensus 274 ~e~kl~D--~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 274 EEEKLKD--AAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhHH--HHHHHHHHHHh--cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 1111111 23566666666 4455666666666554432 10
Q ss_pred --------------CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCC
Q 021242 168 --------------LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 168 --------------~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
+.-..++..|+=..++.-|. +..-+++..|...++.|+.+..+-. ...+.-|++++.+.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlE-DEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE-- 422 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLE-DEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDE-- 422 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeech-HHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccH--
Confidence 01112333444455555553 3344678888888888876432211 23467889999864
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccchHHHHhhh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEEILKKL 313 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~~~~~~~~~ 313 (315)
...++..|..+|..|+.+. .++ ..-++.++..+.+.++.+|+....+|++.+-+..-.|.|.-.+.+|.+
T Consensus 423 -~~~VRL~ai~aL~~Is~~l-------~i~--eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 423 -IEVVRLKAIFALTMISVHL-------AIR--EEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred -HHHHHHHHHHHHHHHHHHh-------eec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 7899999999999997642 123 445677888889999999999999999887766656667666666655
Q ss_pred c
Q 021242 314 K 314 (315)
Q Consensus 314 ~ 314 (315)
+
T Consensus 493 ~ 493 (823)
T KOG2259|consen 493 G 493 (823)
T ss_pred h
Confidence 3
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.079 Score=52.22 Aligned_cols=253 Identities=15% Similarity=0.126 Sum_probs=132.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--------
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-------- 80 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-------- 80 (315)
..+...|++++.-++.-|+.+|.+++.. +-.| ...|.+.++++..++-++..|+.+...+-+..+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 4566777888888888888888888743 2222 345777788888888888888777766554421
Q ss_pred --hhhhh--hc----CchHHHHHHHhcCCCC--CCHHHHHHHHHHHHHhhcCC---Cc-----hhhhhhccccHHHHHHH
Q 021242 81 --DSLMS--TR----GLLDAISHVLRHHSTS--TSSAAVQSSAATLHSLLVVD---SY-----RPIIGAKRDIIHSLIEI 142 (315)
Q Consensus 81 --~~~i~--~~----~~i~~L~~lL~~~~~~--~~~~~~~~a~~~L~~Ls~~~---~~-----~~~i~~~~g~i~~Lv~l 142 (315)
++.+. .+ +++..+.++++..+.. .-.+....-..+|.+++... +. .+.+.+. - +-.++.+
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi-~-iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI-R-ILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH-H-HHHHHHH
Confidence 11111 12 2455666666531000 00112234556677776422 11 1122211 1 2234455
Q ss_pred hhccCCChHHHHHHHHHHHHhccCCC---cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhH------
Q 021242 143 IKTRNSPLRSVKDALKALFGIALYPL---NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESV------ 212 (315)
Q Consensus 143 l~~~~~~~~~~~~a~~aL~~Ls~~~~---~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~------ 212 (315)
|. .++++......-.|...+.+.+ |....+=...|..+..+. ++.++++.|..+|...-.+ +.|.
T Consensus 261 LG--q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 261 LG--QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred hc--CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 55 4566666666666666666432 221111122233322221 2344455555444433221 1111
Q ss_pred ----------HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHH
Q 021242 213 ----------DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAK 282 (315)
Q Consensus 213 ----------~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~ 282 (315)
.++.++. ..+++.|++. +..+|..|...++.|.... ..+.|+ +.|+..+.+.++.
T Consensus 336 ~L~r~V~~d~~avqrHr--~tIleCL~Dp---D~SIkrralELs~~lvn~~---Nv~~mv-------~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHR--STILECLKDP---DVSIKRRALELSYALVNES---NVRVMV-------KELLEFLESSDED 400 (866)
T ss_pred hHHhhhcCCcHHHHHHH--HHHHHHhcCC---cHHHHHHHHHHHHHHhccc---cHHHHH-------HHHHHHHHhccHH
Confidence 1111111 4556677764 7888888988888887532 223443 3677788887888
Q ss_pred HHHHHHHH
Q 021242 283 GKTKAVAL 290 (315)
Q Consensus 283 ~k~~A~~~ 290 (315)
.|...+.-
T Consensus 401 ~k~~~as~ 408 (866)
T KOG1062|consen 401 FKADIASK 408 (866)
T ss_pred HHHHHHHH
Confidence 87766653
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.31 E-value=0.041 Score=51.46 Aligned_cols=197 Identities=19% Similarity=0.093 Sum_probs=125.6
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.+..|++.|.+.++.++..++.+|..+- ..+..+.|+.+|++.++.++..++.++... .
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r----------~ 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH----------R 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh----------c
Confidence 4899999999999899999999997543 234578899999999999998888777541 2
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+..+.+..+|++ .++.++..++.+|..+- . ...++.|...+. +.++.++..|+++|..+-.
T Consensus 146 ~~~~~~L~~~L~d----~d~~Vra~A~raLG~l~----------~-~~a~~~L~~al~--d~~~~VR~aA~~al~~lG~- 207 (410)
T TIGR02270 146 HDPGPALEAALTH----EDALVRAAALRALGELP----------R-RLSESTLRLYLR--DSDPEVRFAALEAGLLAGS- 207 (410)
T ss_pred cChHHHHHHHhcC----CCHHHHHHHHHHHHhhc----------c-ccchHHHHHHHc--CCCHHHHHHHHHHHHHcCC-
Confidence 3356788888986 78889989988888743 2 233677888887 5688999999999876643
Q ss_pred CCcHHHHH---hhCCcHH---HHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh----c---CCHHHHHHHhhcCCC
Q 021242 167 PLNRYQVI---ALGGVQP---LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK----C---CGIGVLVDLLDLGTG 233 (315)
Q Consensus 167 ~~~~~~i~---~~g~v~~---L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~----~---~~i~~Lv~ll~~~~~ 233 (315)
++-...+. ...+.+. +...+.--++ ..+..-|..|...+..+..... . ..++.|+..+.+
T Consensus 208 ~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~----~~a~~~L~~ll~d~~vr~~a~~AlG~lg~p~av~~L~~~l~d--- 280 (410)
T TIGR02270 208 RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG----PDAQAWLRELLQAAATRREALRAVGLVGDVEAAPWCLEAMRE--- 280 (410)
T ss_pred HhHHHHHHHHHhccCccHHHHHHHHHHhCCc----hhHHHHHHHHhcChhhHHHHHHHHHHcCCcchHHHHHHHhcC---
Confidence 22111111 1111111 1111100000 1333444445554443332222 1 247888887764
Q ss_pred CChhHHHHHHHHHHHHhc
Q 021242 234 SGHRVKENAVSALLNLVN 251 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~ 251 (315)
+.....|..++..|+-
T Consensus 281 --~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 281 --PPWARLAGEAFSLITG 296 (410)
T ss_pred --cHHHHHHHHHHHHhhC
Confidence 3477788888888863
No 87
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.28 E-value=0.00078 Score=40.74 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=34.7
Q ss_pred hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 209 EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 209 ~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
++++..+.+.|+++.|++++..+ +..+++.++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~---~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE---DEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHc
Confidence 34778889999999999999965 8999999999999986
No 88
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.036 Score=53.92 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=119.2
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccch
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~~ 81 (315)
.-+..+|+|++.|..++|.++-.|+..|+.||..+|.|.-.+ -|.+.+++... +.=+....+....+|+--++
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP- 251 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP- 251 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc-
Confidence 346789999999999999999999999999999998866544 58888888653 33355666677777764433
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHH--Hhh-cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLH--SLL-VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~--~Ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
++ ....+++|..++.+ ..-..+...+..++- +++ +.++.-..+. -++..|-.++. +.|+..+--++-
T Consensus 252 RL--gKKLieplt~li~s---T~AmSLlYECvNTVVa~s~s~g~~d~~asiq---LCvqKLr~fie--dsDqNLKYlgLl 321 (877)
T KOG1059|consen 252 RL--GKKLIEPITELMES---TVAMSLLYECVNTVVAVSMSSGMSDHSASIQ---LCVQKLRIFIE--DSDQNLKYLGLL 321 (877)
T ss_pred hh--hhhhhhHHHHHHHh---hHHHHHHHHHHHHheeehhccCCCCcHHHHH---HHHHHHhhhhh--cCCccHHHHHHH
Confidence 22 12357888888875 112222223333322 222 2223333333 34788888888 568888888888
Q ss_pred HHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 159 ALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 159 aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
+++-+.. +|.. ++ .--..++++|. +.+.+++-.|+..|.-+-
T Consensus 322 am~KI~ktHp~~----Vq-a~kdlIlrcL~-DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 322 AMSKILKTHPKA----VQ-AHKDLILRCLD-DKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHHhhhCHHH----HH-HhHHHHHHHhc-cCCchhHHHHHHHHHHHh
Confidence 8888775 3321 11 11235678884 678888888888777653
No 89
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.025 Score=53.49 Aligned_cols=281 Identities=16% Similarity=0.153 Sum_probs=172.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc----------------------h-----------hhHHHHhC-C-
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA----------------------E-----------IRPMISEA-G- 48 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~----------------------~-----------~~~~i~~~-g- 48 (315)
.+.-+++.+..++.++-.+|..|++.+-++++-.. . -.+.++.. .
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 35667777777777777777777766665553221 0 11122211 1
Q ss_pred --CHHHHHHHH----cCCCHHHHHHHHHHHHhcCcccchhhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 49 --SIPYLAEIL----YSSSHAFQENAAATLLNLSITSRDSLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 49 --~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~~~~~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
.++.++++| ...++..|..-+.-|..+-.-++.+.+ .-+..++-|..+|.+ ++++++..+-.++.++-.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD----~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD----SSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHH
Confidence 144444444 445677777777777666555554433 245567778888886 678888766666666542
Q ss_pred -CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHH
Q 021242 122 -VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASA 200 (315)
Q Consensus 122 -~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~ 200 (315)
... +....+.+..++.++.-+. ..++.++..|+.-+..+..-+.......-.|++..+++++.+.+...+.+.+..
T Consensus 238 eI~s-~P~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 238 EIRS-SPSSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred HHhc-CccccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 222 2222233455788888888 447888888887777777644433333447888888888853322234444332
Q ss_pred ---HHHHHhcChhhHHHHHhcCC-HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHH
Q 021242 201 ---VIAQIAGCEESVDEFKKCCG-IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVA 276 (315)
Q Consensus 201 ---~L~~L~~~~~~~~~i~~~~~-i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll 276 (315)
.|..+.+.+...++ ++.|. +..+.+.+.+. ..+.|-.+..-+..+-...+. ++..+....++.|+.-+
T Consensus 315 ~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~---~~~tri~~L~Wi~~l~~~~p~----ql~~h~~~if~tLL~tL 386 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD---REETRIAVLNWIILLYHKAPG----QLLVHNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHhhCcc----hhhhhccHHHHHHHHhh
Confidence 34445555555544 45553 77888888864 677777777666666543332 33333467888888888
Q ss_pred hhCCHHHHHHHHHHHHHHhhCCC
Q 021242 277 QNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 277 ~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
.+.+..|...+-.++..+..+.+
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCcc
Confidence 88888888888888887765543
No 90
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.011 Score=59.66 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhc-CCCchhhhhhc---cccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHH
Q 021242 109 VQSSAATLHSLLV-VDSYRPIIGAK---RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184 (315)
Q Consensus 109 ~~~a~~~L~~Ls~-~~~~~~~i~~~---~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~ 184 (315)
.+.+..+|.|+.. +++-..+++.. -|.++.++..+.. .++++++.-|+.++.-+..+.+....++..|.+..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~-~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC-RKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH-cCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3568889999874 67666666542 2556788888876 47889999999999988888888899999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 185 LVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 185 lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
+|. +-++.++.++.+|-.|++.++...+-.+.||+..+.+++-.. .+...+.++...|..+..
T Consensus 1821 lLH--S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~--~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLH--SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT--NSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHh--cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc--CcHHHHHHHHHHHHHhhh
Confidence 995 467889999999999999988777777899988888888754 377888888888888864
No 91
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.099 Score=46.59 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=169.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHH--HHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYL--AEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
-.+.++..+..++-++...|.+.|..++.. +..-..+.+......+ +.+--..+.-++-.....+..+..-.+ -.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 345667777778888999999999999865 6667777765554443 222222333344444555544443332 22
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHH----H
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL----K 158 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~----~ 158 (315)
.....|.+..|..=++- ..+.-+..++......|+..+..+..+.+ .|+|..+.+++.-.+.+|--...++ +
T Consensus 208 eckkSGLldlLeaElkG---teDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKG---TEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HhhhhhHHHHHHHHhcC---CcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 34577888888888873 13445567888999999998888888777 5889999999873223333222222 3
Q ss_pred HHHHhccCCCcHHHHHhh--CCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCC--HHHHHHHhhcCCCC
Q 021242 159 ALFGIALYPLNRYQVIAL--GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG--IGVLVDLLDLGTGS 234 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~--g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~--i~~Lv~ll~~~~~~ 234 (315)
.+.+.+..+-.-..++++ -++.-.++++. ..++..++.|..++..|.++.+|.+.+...|- ...++.-..+. .
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiE-mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq--n 360 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIE-MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ--N 360 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhh-cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc--c
Confidence 344433322222233322 23333445554 34677889999999999999999998887763 44444333222 1
Q ss_pred ChhHHHHHHHHHHHHhccCC----------H--HHHHHHHHH-----ccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 235 GHRVKENAVSALLNLVNFGG----------E--RAAEEVKEM-----AMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~----------~--~~~~~i~~~-----~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
...-++.++.+|.+++..-. + +.+..+... +..-...+..+++.+.|+++-.|-+.+..+..
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 34556677888888874211 1 111111110 00223455677888899998888777666543
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.01 E-value=0.0011 Score=43.17 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNL 75 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 75 (315)
|.+|..|+++|..++...+..-.. ....++|.|+.+|+++++++|..|+++|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988664433333 4567899999999998899999999999874
No 93
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.11 Score=51.25 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=144.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc------h
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR------D 81 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~------~ 81 (315)
.+.+-.+|.+....+..+|+.++.++...+.. .+.. ++..|=.++++....+|..|.++|..+|...+ +
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 45677777888889999999999999755432 2222 78888888888889999999999988876532 1
Q ss_pred ----hhhhhc---CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh--cCCCchhhhhh------------ccccHHHHH
Q 021242 82 ----SLMSTR---GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL--VVDSYRPIIGA------------KRDIIHSLI 140 (315)
Q Consensus 82 ----~~i~~~---~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls--~~~~~~~~i~~------------~~g~i~~Lv 140 (315)
.++-+. -.-.++..+|+. ++......-...+.+.. ..++.+..+.+ ..+.+..|.
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 122111 134455666665 33333333333333332 13333322211 123344555
Q ss_pred HHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhc
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKC 218 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~ 218 (315)
.+|+. .|..+.+.....++..+.. .++.|... +..|..++.+ -+....+..+|+-|-.. |. .....
T Consensus 398 ~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~-----L~~LCefIED---ce~~~i~~rILhlLG~EgP~---a~~Ps 465 (865)
T KOG1078|consen 398 NMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERG-----LEHLCEFIED---CEFTQIAVRILHLLGKEGPK---APNPS 465 (865)
T ss_pred HHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHH-----HHHHHHHHHh---ccchHHHHHHHHHHhccCCC---CCCcc
Confidence 55554 3455555555555555544 44444332 3455566642 23445556666655321 10 00000
Q ss_pred CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 219 CGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 219 ~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.-|......+-- ++..++..|+.+|+.+.. +.+. .. ..+.-.|.+.+-+.+..+|+.|...|+.+.+
T Consensus 466 kyir~iyNRviL---En~ivRaaAv~alaKfg~-~~~~-----l~--~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 466 KYIRFIYNRVIL---ENAIVRAAAVSALAKFGA-QDVV-----LL--PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhHHHhhhhhh---hhhhhHHHHHHHHHHHhc-CCCC-----cc--ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 112222221111 156778888888888863 2211 22 3344555678888899999999999999983
No 94
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.2 Score=48.98 Aligned_cols=260 Identities=16% Similarity=0.175 Sum_probs=131.9
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCccc-c-
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITS-R- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~-~- 80 (315)
-+-.+..+-..|.+.++-.+.-|+.++.++... +.++.+. .-||.|+. +.. .+-++..|+-+|..|-... +
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~KlLv--S~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIPKLLV--SGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhHHHHh--CCcchHHHHHHHHHHHHHHHhcCccc
Confidence 345677788888888888888899998888654 3444433 23555543 333 3345566666665555442 1
Q ss_pred -h------hhh--h---hcC---chHHHHHHH-hcCCCCCCHHHHH---HHHHHHHHhhcCCC-c-hhhh---hhccccH
Q 021242 81 -D------SLM--S---TRG---LLDAISHVL-RHHSTSTSSAAVQ---SSAATLHSLLVVDS-Y-RPII---GAKRDII 136 (315)
Q Consensus 81 -~------~~i--~---~~~---~i~~L~~lL-~~~~~~~~~~~~~---~a~~~L~~Ls~~~~-~-~~~i---~~~~g~i 136 (315)
+ +++ . ..| +...|+..+ +. ..++.+. .+..-|.+++.... . .+-. .-+.=+.
T Consensus 183 ~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~----~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKK----NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cChhhHHHHHHHHhCccccceeeehHHHHHHHHHc----CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 1 111 0 112 123334444 32 3334333 23333444432211 1 1100 0001112
Q ss_pred HHHHHHhhcc--CCChHHH---HHHHHHHHHhccCCCcHHHHHhh-------------------------CCcHHHHHHH
Q 021242 137 HSLIEIIKTR--NSPLRSV---KDALKALFGIALYPLNRYQVIAL-------------------------GGVQPLFSLV 186 (315)
Q Consensus 137 ~~Lv~ll~~~--~~~~~~~---~~a~~aL~~Ls~~~~~~~~i~~~-------------------------g~v~~L~~lL 186 (315)
-.++.+|+.. ..|+..+ -+++..+.|.+..+...+.+.+. .++..|-++|
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl 338 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL 338 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 2444444421 2233322 23445555555422111111111 2233344455
Q ss_pred hcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHcc
Q 021242 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAM 266 (315)
Q Consensus 187 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~ 266 (315)
. +.+..++-.|+..++.|++++....++..+ ...++..|++. .+..++..++..|+.+|..+ .++.|++
T Consensus 339 s-~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkte--rDvSirrravDLLY~mcD~~---Nak~IV~--- 407 (938)
T KOG1077|consen 339 S-HRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTE--RDVSIRRRAVDLLYAMCDVS---NAKQIVA--- 407 (938)
T ss_pred h-cccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccc--cchHHHHHHHHHHHHHhchh---hHHHHHH---
Confidence 3 345556666777777777776666666544 67777888853 37788999999999998643 3355553
Q ss_pred CcHHHHHHHHhhCCHHHHHHHH
Q 021242 267 QVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 267 g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
.|+..+.+.++..|+.-.
T Consensus 408 ----elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 408 ----ELLQYLETADYSIREEIV 425 (938)
T ss_pred ----HHHHHHhhcchHHHHHHH
Confidence 355555666666665443
No 95
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.95 E-value=0.18 Score=49.65 Aligned_cols=250 Identities=16% Similarity=0.208 Sum_probs=146.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccC--chhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhh-
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHD--AEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSL- 83 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~- 83 (315)
+...+-.|++.++.+|.+|+..+..++.-= ..--+.+...|.| |.+.|...++++.--.+.+|..+...-. .+.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 344566788999999999999999988541 1223455556653 7788888888877665565544432211 111
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCc---hhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSY---RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
-=-.+.+|.|.-+|++ -+..+++++...+..++. .++. |.-++-+ -.|+.+|+.+ ...++..|..+
T Consensus 879 pPi~dllPrltPILkn----rheKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkah--kK~iRRaa~nT 948 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKN----RHEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAH--KKEIRRAAVNT 948 (1172)
T ss_pred CChhhhcccchHhhhh----hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHH--HHHHHHHHHhh
Confidence 0124679999999997 567888899888888885 3332 3333332 2456666643 56899999999
Q ss_pred HHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHH---HHHHHHHHhcChhhHHHHHhcCC----HHHHHHHhhcCC
Q 021242 160 LFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVED---ASAVIAQIAGCEESVDEFKKCCG----IGVLVDLLDLGT 232 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~---a~~~L~~L~~~~~~~~~i~~~~~----i~~Lv~ll~~~~ 232 (315)
+..++. .+ |=-..|..+|. +..+++. .|.++. ...+.+..| +|.|+.--...
T Consensus 949 fG~Iak------aI---GPqdVLatLln---nLkvqeRq~RvcTtva--------IaIVaE~c~pFtVLPalmneYrtP- 1007 (1172)
T KOG0213|consen 949 FGYIAK------AI---GPQDVLATLLN---NLKVQERQNRVCTTVA--------IAIVAETCGPFTVLPALMNEYRTP- 1007 (1172)
T ss_pred hhHHHH------hc---CHHHHHHHHHh---cchHHHHHhchhhhhh--------hhhhhhhcCchhhhHHHHhhccCc-
Confidence 998874 11 33344555553 2233332 222222 122223333 34433322222
Q ss_pred CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 233 GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
...+|.-.+.+++.+..--.+..+..+ --+.|.|-+-+-+.|+.-|+.|..+.+.++=
T Consensus 1008 --e~nVQnGVLkalsf~FeyigemskdYi----yav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1008 --EANVQNGVLKALSFMFEYIGEMSKDYI----YAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred --hhHHHHhHHHHHHHHHHHHHHHhhhHH----HHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 445665455554444321001111222 1255666677778899999999999888863
No 96
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.92 E-value=0.0028 Score=48.06 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred hhhhHHHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 021242 4 KRRTVRSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNL 75 (315)
Q Consensus 4 ~~~~i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 75 (315)
...-+..|++.| .+.++....-|+.-|..++...|..|..+.+.|+=+.++.++.++|++++..|+.+++.+
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345677899999 455889999999999999999999898888899999999999999999999999998765
No 97
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.91 E-value=0.019 Score=49.11 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHhhcCC---Cchhhhhh-ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCc
Q 021242 104 TSSAAVQSSAATLHSLLVVD---SYRPIIGA-KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGV 179 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v 179 (315)
.+=+.+..+...|..+.... .....+.. -..++..+...+.+ ....+...|+.++..|+..-.....-.-...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d--~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD--LRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H--H---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 45566778888888887533 22222221 12334455666552 24567888999999988743333222234667
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHH
Q 021242 180 QPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAE 259 (315)
Q Consensus 180 ~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 259 (315)
|.|++.+. ++...+++.|..+|..+...-..-..+. .+.+...+.+. ++.++..++..+..+....+.. ..
T Consensus 97 ~~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~-~~ 167 (228)
T PF12348_consen 97 PPLLKKLG-DSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK---NPQVREECAEWLAIILEKWGSD-SS 167 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S----HHHHHHHHHHHHHHHTT------G
T ss_pred HHHHHHHc-cccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccch-Hh
Confidence 88888885 4556678888888888866422111111 24444556655 8999999999888887644310 01
Q ss_pred HHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 260 EVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 260 ~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.+-... ....+.+...+.+.++.||+.|..++..+..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 111100 2367778888999999999999998887743
No 98
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.86 E-value=0.014 Score=43.01 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.++.++..+.+. +.+++..|+.+|+++++... .+++.+-..++..|..+..+.++.||..|.-+-+.+.
T Consensus 28 Il~pVL~~~~D~---d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQ---DSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 478888888865 89999999999999987543 3455434678999999999999999998876665554
No 99
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.85 E-value=0.34 Score=45.36 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=122.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcccc-----hhhhhhcCchHHHHHHHhcCC-CCCCHH--HHHHHHHHHHHhhcCCC
Q 021242 53 LAEILYSSSHAFQENAAATLLNLSITSR-----DSLMSTRGLLDAISHVLRHHS-TSTSSA--AVQSSAATLHSLLVVDS 124 (315)
Q Consensus 53 Lv~lL~~~~~~~~~~a~~~L~~la~~~~-----~~~i~~~~~i~~L~~lL~~~~-~~~~~~--~~~~a~~~L~~Ls~~~~ 124 (315)
+..+++..+.+-+.+|+-..-.+..+++ ++.+.++-|.+.+-++|.+.+ .++.++ .+..+..+|..++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5666776677777888888888887764 456678889999999996432 123333 45567777888887776
Q ss_pred ch--hhhhhccccHHHHHHHhhccCCChH------HHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcch-H
Q 021242 125 YR--PIIGAKRDIIHSLIEIIKTRNSPLR------SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGI-V 195 (315)
Q Consensus 125 ~~--~~i~~~~g~i~~Lv~ll~~~~~~~~------~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~-~ 195 (315)
-. ..+.+ . ||.|..++... ++++ +...+..+|...+..+.....++..|+++.+.++-.- ++-.. .
T Consensus 96 lAsh~~~v~--~-IP~llev~~~~-~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~~d~ 170 (698)
T KOG2611|consen 96 LASHEEMVS--R-IPLLLEVMSKG-IDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGSHDM 170 (698)
T ss_pred hccCHHHHH--h-hhHHHHHHHhc-CCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCchhH
Confidence 42 22332 4 89999998753 4444 7788999999999999999999999999999977642 22222 3
Q ss_pred HHHHHHHHHHhc----ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 196 EDASAVIAQIAG----CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 196 ~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
+.++.++-.+.. +++....+... |..+-.-+... +...|-..|.+|..+..
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~---~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVL---HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHh---hhHHHHHHHHHHHHHHh
Confidence 334544444322 33444444322 33333333332 55677778888876543
No 100
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.82 E-value=0.36 Score=46.61 Aligned_cols=266 Identities=16% Similarity=0.184 Sum_probs=149.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC--chhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHD--AEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
+-|...+..|++..|.+|..|+.....+++-= -.--+.+...|.| |.+-|...+|++.--.+.++..+...-+ +.
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 44667788899999999999999998887542 1223456666654 6777877888877766666655543322 21
Q ss_pred h-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-C---chhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 83 L-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-S---YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 83 ~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
+ -=-.|.+|.|..+|++ .+..+..+....+.-++... + .|.-++-+ -.|+++|+ ..+.+++.+|.
T Consensus 682 mqpPi~~ilP~ltPILrn----kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lk--s~nKeiRR~A~ 751 (975)
T COG5181 682 MQPPISGILPSLTPILRN----KHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLK--SWNKEIRRNAT 751 (975)
T ss_pred cCCchhhccccccHhhhh----hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHH--HhhHHHHHhhh
Confidence 1 1135789999999986 45566667666666666433 2 23333332 24666777 34678999999
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHH---HHHHHHHHhcChhhHHHHHhcCCHHHHHH-HhhcCCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVED---ASAVIAQIAGCEESVDEFKKCCGIGVLVD-LLDLGTG 233 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~---a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~-ll~~~~~ 233 (315)
.++..++. .+ |--..|..+|. +..+++. .+..+. ...+.+..|--.++. ++.+..-
T Consensus 752 ~tfG~Is~------ai---GPqdvL~~Lln---nLkvqeRq~Rvctsva--------I~iVae~cgpfsVlP~lm~dY~T 811 (975)
T COG5181 752 ETFGCISR------AI---GPQDVLDILLN---NLKVQERQQRVCTSVA--------ISIVAEYCGPFSVLPTLMSDYET 811 (975)
T ss_pred hhhhhHHh------hc---CHHHHHHHHHh---cchHHHHHhhhhhhhh--------hhhhHhhcCchhhHHHHHhcccC
Confidence 99988874 11 22223333442 2223322 222221 122223333222222 3332210
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccchHHH
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEEI 309 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~~~~~ 309 (315)
....+|.-.+.+++.+..--.......+ --..|.|-+.+.+.|+.-|+.|..+++.++= ++.=|+..+..
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~dYv----y~itPlleDAltDrD~vhRqta~nvI~Hl~L--nc~gtg~eda~ 881 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASLDYV----YSITPLLEDALTDRDPVHRQTAMNVIRHLVL--NCPGTGDEDAA 881 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcccchHHHHHHHHHHHHHhc--CCCCcccHHHH
Confidence 1344554444444433211011111222 2245666677888899999999999888863 24444444443
No 101
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.3 Score=46.87 Aligned_cols=251 Identities=16% Similarity=0.102 Sum_probs=144.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.+..+.+.++-+++..|.....+|..+...... ....-..+.+.++++..+..-+..|...++-+..+..-....+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~ 172 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE 172 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh
Confidence 466788888888889998888888877533221 1223456788888887777888888888888876654444446
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-CCChHHHHHHHHHHHHhcc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~aL~~Ls~ 165 (315)
.+.+..|...+.+..+.-+++....+..+... .-.... + ..+++.+-.++.+. +....++..|..+...+.+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~--~Lg~~~----E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQG--NLGPPF----E-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHH--hcCCCC----C-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 67788888888753222233322122211111 111111 1 24345555555421 2344555554444443332
Q ss_pred --CCCcHHHHHhhCCcHHHHHHHhcCCCcch--HHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 166 --YPLNRYQVIALGGVQPLFSLVVNGGRAGI--VEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 166 --~~~~~~~i~~~g~v~~L~~lL~~~~~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
++...+. .+|+++.-+.. ..+ ...++..|..++.+....-...-...||.+.+.|-+- .+++++.
T Consensus 246 ~~~~~aVK~-----llpsll~~l~~---~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT---~~evr~a 314 (569)
T KOG1242|consen 246 CLSAYAVKL-----LLPSLLGSLLE---AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT---KPEVRKA 314 (569)
T ss_pred hcCcchhhH-----hhhhhHHHHHH---HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC---CHHHHHH
Confidence 2211111 13344433321 233 3447778888877654444444456789999988763 8999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHH
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~ 286 (315)
+..++.+++.--.. .+|.. .+|.|++.+.+++..+.++
T Consensus 315 ~~~~l~~~~svidN---~dI~~----~ip~Lld~l~dp~~~~~e~ 352 (569)
T KOG1242|consen 315 GIETLLKFGSVIDN---PDIQK----IIPTLLDALADPSCYTPEC 352 (569)
T ss_pred HHHHHHHHHHhhcc---HHHHH----HHHHHHHHhcCcccchHHH
Confidence 99999998764321 23433 5667776666665444443
No 102
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.79 E-value=0.046 Score=43.77 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=88.4
Q ss_pred HHHHhhCCcHHHHHHHhcCCC-----cchHHHHHHHHHHHhcChh-hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 171 YQVIALGGVQPLFSLVVNGGR-----AGIVEDASAVIAQIAGCEE-SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 171 ~~i~~~g~v~~L~~lL~~~~~-----~~~~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
..++..||+..|++++.+... .+....++.++..|..+.. +. +..+...|.+++.++... ..+..+.+.|..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~-~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSS-AMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccc-cccchHHHHHHH
Confidence 467789999999999974332 2445557777777766543 33 344556788888888854 236788999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+|-++... ++...+.+-+ +=-++.|+..++..+++++.+|-.+++.|
T Consensus 83 ILEs~Vl~-S~~ly~~V~~--evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 83 ILESIVLN-SPKLYQLVEQ--EVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHHhC-CHHHHHHHhc--cCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999874 4444455544 55689999999999999999999998877
No 103
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.015 Score=54.73 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=123.8
Q ss_pred HHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCC
Q 021242 25 EALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLRHHST 102 (315)
Q Consensus 25 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~ 102 (315)
.++..|..++..-.--|.-+.++.+.++|++.|+.++..+..-+...+.|+...-. ..-+...+.|..|+.++.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s--- 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS--- 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc---
Confidence 34455556655434457788889999999999987666666677778888766532 3445688999999999986
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCc--hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CC---cHHHHHhh
Q 021242 103 STSSAAVQSSAATLHSLLVVDSY--RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PL---NRYQVIAL 176 (315)
Q Consensus 103 ~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~---~~~~i~~~ 176 (315)
.+...+.++.|.++++....++ +..+...-| +..++++.. +....++..++..|.|+.-+ .. .+...+..
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~N--Dpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTN--DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhc--CcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 4567888999999999976554 333444458 899999988 34678999999999998762 22 23222221
Q ss_pred ---C-CcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 177 ---G-GVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 177 ---g-~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
. ....+++.++. .++-..+..+.+|.+++.++++.+.++
T Consensus 561 ~p~~ylfk~l~~k~e~-~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 561 TPRRYLFKRLIDKYEE-NNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred ChHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHhccchHHHHH
Confidence 1 23345555542 344335556777777766555444443
No 104
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.1 Score=51.16 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=137.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch---hhhh
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD---SLMS 85 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~---~~i~ 85 (315)
|+.=+-+++++..-+..|+.+....-..-+..+..=...+++|.++.+..++..-++..+.|.|+.++.+-.. ....
T Consensus 367 ~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~ 446 (859)
T KOG1241|consen 367 PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL 446 (859)
T ss_pred HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh
Confidence 3444477889999999999999988755344444444567899999999876667889999999999877432 1222
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhh----hhh--ccccHHHHHHHhhccC-CChHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPI----IGA--KRDIIHSLIEIIKTRN-SPLRSVKDA 156 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~----i~~--~~g~i~~Lv~ll~~~~-~~~~~~~~a 156 (315)
-...++.++.-|.+ .|.+..++||++-+|+.. +..... ... -..+|..|++.-...+ .+...+..|
T Consensus 447 l~~~l~~l~~gL~D-----ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 447 LQSKLSALLEGLND-----EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred hhHHHHHHHHHhhh-----CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 44566677777764 677888999999999832 111111 111 0122334444433212 123577788
Q ss_pred HHHHHHhcc-CCCcHHHHHhhCCcHHHHHHH----h----cCC----CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHH
Q 021242 157 LKALFGIAL-YPLNRYQVIALGGVQPLFSLV----V----NGG----RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIG 222 (315)
Q Consensus 157 ~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL----~----~~~----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~ 222 (315)
..+|..|-. .++....++ .+.......-| . +.. ...++...|.+|..+-. .+..+..+.+ ..+.
T Consensus 522 YeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 899998877 455555554 23333333222 1 000 11223335555555432 2222222221 2346
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 223 VLVDLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 223 ~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.+++++..+ .+..+.+.+..++..+...
T Consensus 600 lflri~~s~--~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 600 LFLRIFESK--RSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHcCC--ccccchHHHHHHHHHHHHH
Confidence 667777753 3666777777766666543
No 105
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.11 Score=50.92 Aligned_cols=237 Identities=13% Similarity=0.158 Sum_probs=135.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCch----------------hhHHHHh--CCCHHHHHHHHcCCCH-------H
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAE----------------IRPMISE--AGSIPYLAEILYSSSH-------A 63 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~i~~--~g~i~~Lv~lL~~~~~-------~ 63 (315)
..-+..++|.++++...|++..+.++.+.-+ ++..... .+++|.|+++|...++ .
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 3445667888899999999999977754222 1111111 3678889999854221 2
Q ss_pred HHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch--hhhhhccccHHHHHH
Q 021242 64 FQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR--PIIGAKRDIIHSLIE 141 (315)
Q Consensus 64 ~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~ 141 (315)
.-.+|..+|.-++.-- ....+++.+.+++.+-.+++-..++.++-+....-..++.. ..+. .+++|.++.
T Consensus 342 p~kAAg~CL~l~A~~~------~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~ 413 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCV------GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIIN 413 (859)
T ss_pred HHHHHHHHHHHHHHHh------cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHH
Confidence 4455556665444322 22234455555542111255666777777777766544432 2333 344899999
Q ss_pred HhhccCCChHHHHHHHHHHHHhccC-CCcHH-HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC--hhhHHH---
Q 021242 142 IIKTRNSPLRSVKDALKALFGIALY-PLNRY-QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC--EESVDE--- 214 (315)
Q Consensus 142 ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~-~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~--~~~~~~--- 214 (315)
+.. +.+.-++..+.|+|..++.. ++-+. ...-.+.++.++.=|. .++.+..+++|++-+|+.. +..+..
T Consensus 414 lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt 489 (859)
T KOG1241|consen 414 LMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQT 489 (859)
T ss_pred Hhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 998 34667778899999999974 32221 2223466667777664 3577889999999999842 111111
Q ss_pred -HHhcCCHHHHHH-HhhcC---CCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 215 -FKKCCGIGVLVD-LLDLG---TGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 215 -i~~~~~i~~Lv~-ll~~~---~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
+.. ...+.++. ++... +......|-.+-.+|..+-++..+.+.
T Consensus 490 ~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy 537 (859)
T KOG1241|consen 490 DPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY 537 (859)
T ss_pred Cccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence 111 12222333 22211 112345666666777777665554443
No 106
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.68 E-value=0.015 Score=42.97 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 194 IVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 194 ~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
++...+.+|.||+. ++.....+.+.|||+.+++...-+ +.++.++|.|..++.+||..+ ++. ++++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n-~eN-Q~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGN-PEN-QEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCC-HHH-HHHH
Confidence 34567889999987 688899999999999999987653 468999999999999999754 344 3443
No 107
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.64 E-value=0.0063 Score=39.52 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 236 HRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+.+|..|+++|.+++.... ......+ ..+++.|..+++++++.||..|++.|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~-~~~~~~~---~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-ELLQPYL---PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-HHHHHHH---HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccH-HHHHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3678999999999876543 3323332 56999999999999999999999988654
No 108
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.61 E-value=0.088 Score=44.96 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-----CCHHHHHHHHHHHHhcCcccch---hhhhhcCchHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-----SSHAFQENAAATLLNLSITSRD---SLMSTRGLLDA 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~la~~~~~---~~i~~~~~i~~ 92 (315)
.-...|+..+.-++.+ ++.|..+.++..=--|-.+|.. ..+-.|-.++.++..+...++. +.....+.+|.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4556777777777766 8899999998754444555532 2345889999999999988763 33458899999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
.++.+.. ++...+..|..++..+-.++.+-.-+.+. +-.+..++.-+.+ .+++...+++.++..+|+.
T Consensus 173 CLrime~----GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 173 CLRIMES----GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhc----ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcC
Confidence 9999997 77888889999998888877663333221 1223333333332 4678888999999999999
Q ss_pred CCCcHHHHH
Q 021242 166 YPLNRYQVI 174 (315)
Q Consensus 166 ~~~~~~~i~ 174 (315)
++.-|..+.
T Consensus 248 nprar~aL~ 256 (293)
T KOG3036|consen 248 NPRARAALR 256 (293)
T ss_pred CHHHHHHHH
Confidence 887776654
No 109
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.61 E-value=0.031 Score=48.51 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcCCHHHHHHHh
Q 021242 151 RSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLL 228 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~~i~~Lv~ll 228 (315)
.....|++.|-.++. +|..+..+-+..++..++++|.......++..++.+|-.+ ..++.+...|.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345678899999998 8888888889999999999995333456666777766655 55789999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHhcc
Q 021242 229 DLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 229 ~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
+.. ..+..++-.++..|+-....
T Consensus 186 k~~-~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSK-STDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccc-cccHHHhHHHHHHHHHHHcc
Confidence 975 35778888899988877654
No 110
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.58 E-value=0.56 Score=42.66 Aligned_cols=256 Identities=14% Similarity=0.086 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHh-ccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHH
Q 021242 21 QTRAEALAELRLLS-KHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVL 97 (315)
Q Consensus 21 ~~~~~a~~~L~~l~-~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL 97 (315)
+....+-..|..+. ..+...++..-+ .--+..+-..|.+ ++.+....++.-|. .-+...+.+..|+..|
T Consensus 14 ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa--------~Ei~~~dll~~Li~~L 85 (335)
T PF08569_consen 14 ELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLA--------QEIYRSDLLYLLIRNL 85 (335)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHH--------HHHHHHTHHHHHHHTG
T ss_pred HHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH--------HHHHHhCHHHHHHHHh
Confidence 66666667777773 222222222222 2224444444433 23332222222221 1234778899999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcCC-Cchh-----hhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLVVD-SYRP-----IIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~-----~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
.. -+.+.+..++.+..++.... +++. .+... -|.++..|-..-+++++...+...|.....++....
T Consensus 86 ~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~---~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 86 PK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH---RPEILDILLRGYENPDIALNCGDMLRECIKHESLAK 158 (335)
T ss_dssp GG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-----THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHH
T ss_pred hh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC---CHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHH
Confidence 86 67899999998888888533 3322 23332 133333222112456777888888999888888888
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcC---CHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCC---GIGVLVDLLDLGTGSGHRVKENAVSALL 247 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~~~~~~~~~a~~~L~ 247 (315)
.++....+..+.+.+. .++..+...|..++..+ +.++....++.... .+...-.+|.++ +--+|.+++..|.
T Consensus 159 ~iL~~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~---NYvtkrqslkLL~ 234 (335)
T PF08569_consen 159 IILYSECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS---NYVTKRQSLKLLG 234 (335)
T ss_dssp HHHTSGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S---SHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC---CeEeehhhHHHHH
Confidence 8888888888999885 57788899999999996 55676767776654 366777788875 8889999999999
Q ss_pred HHhccCCHHHHHHHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 248 NLVNFGGERAAEEVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.|-...+ ...-|.++- ..-+..+..++++.+..++-.|=.+++.+...
T Consensus 235 ellldr~--n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 235 ELLLDRS--NFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHSGG--GHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHchh--HHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9986432 333333321 34467777899999999999999999988654
No 111
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.56 E-value=0.18 Score=50.76 Aligned_cols=270 Identities=14% Similarity=0.093 Sum_probs=148.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcC
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRG 88 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~ 88 (315)
.|++.+.+++.+.|.=|..-|..-...+.-+-+.=-+..++..++++|.+.++++|..|+++|.-++..-. .++. .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le---~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE---T 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH---H
Confidence 78999999999999999988876554432222222345678899999999999999999999998884321 1111 1
Q ss_pred chHHHHHHHhcCCCCCCHHHHHH-HHHHHHHhhcCCCchhhhhh---ccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQS-SAATLHSLLVVDSYRPIIGA---KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~-a~~~L~~Ls~~~~~~~~i~~---~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.++.|..-+-+ +..+.+.. +.+.....+..++....... +.-+.|.|..-+....+...++-.++-.+...-
T Consensus 86 ~ve~L~~~~~s----~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 86 IVENLCSNMLS----GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHhhhhcc----chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 23334333322 23333332 22222233333321111111 112345555555432223346666666665433
Q ss_pred cC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 165 LY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 165 ~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
+. .+.--. ...+....++.-+. .+...++.+|+..|..|+..-. +... .+.+..|++-|.+. .......--+
T Consensus 162 sr~g~ll~~-fh~~il~~l~~ql~-s~R~aVrKkai~~l~~la~~~~-~~ly--~~li~~Ll~~L~~~--~q~~~~rt~I 234 (1233)
T KOG1824|consen 162 SRFGTLLPN-FHLSILKCLLPQLQ-SPRLAVRKKAITALGHLASSCN-RDLY--VELIEHLLKGLSNR--TQMSATRTYI 234 (1233)
T ss_pred HhhcccCcc-hHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHHHhcC-HHHH--HHHHHHHHhccCCC--CchHHHHHHH
Confidence 31 110001 23344455555554 3455678899999999976311 1111 12345566656543 2333333445
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHH---hhCCHHHHHHHHHHHHHHhhC
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVA---QNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll---~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.+|..+|...+.+ .-.+....+|.+.+.. +.++.+.|+.+-..|..|-..
T Consensus 235 q~l~~i~r~ag~r----~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 235 QCLAAICRQAGHR----FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHHHHHhcch----hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 6677777644322 2222244667777777 667889999888877766543
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.56 E-value=0.1 Score=43.02 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~ 98 (315)
+|.+|..++.++..++..-+.. + ...+|.+...|+++++.+|..|+.+|..|...+--++ +...+..++..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHHHc
Confidence 4789999999999999776542 2 3448999999999999999999999999876653221 1223467777777
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh
Q 021242 99 HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK 144 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~ 144 (315)
+ ++++++..|...+..++... ....+.. - ++.++.-+.
T Consensus 74 D----~~~~Ir~~A~~~~~e~~~~~-~~~~i~~--~-~~e~i~~l~ 111 (178)
T PF12717_consen 74 D----ENPEIRSLARSFFSELLKKR-NPNIIYN--N-FPELISSLN 111 (178)
T ss_pred C----CCHHHHHHHHHHHHHHHHhc-cchHHHH--H-HHHHHHHHh
Confidence 6 78899999999999888643 2233332 3 566666555
No 113
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.53 E-value=0.017 Score=39.97 Aligned_cols=67 Identities=21% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC
Q 021242 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC 219 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 219 (315)
.+.|++++.++++.+.....+-+.++++.++++....+...++-.|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4679999999999888888877789999999999866777889999999999999999999887665
No 114
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.51 E-value=0.047 Score=45.45 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=79.9
Q ss_pred CCCcchHHHHHHHHHHHhcChhhHHHHHhc---------------C-CHHHHHHHhhcCC---CCChhHHHHHHHHHHHH
Q 021242 189 GGRAGIVEDASAVIAQIAGCEESVDEFKKC---------------C-GIGVLVDLLDLGT---GSGHRVKENAVSALLNL 249 (315)
Q Consensus 189 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~---------------~-~i~~Lv~ll~~~~---~~~~~~~~~a~~~L~~l 249 (315)
+++......++.+|+||+..+++...+.+. + .+..|++.+..|. .....-..+...+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 356677889999999999999888866432 1 3788888777631 11234556788999999
Q ss_pred hccCCHHHHHHHHHHccCc--HHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 250 VNFGGERAAEEVKEMAMQV--ADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 250 ~~~~~~~~~~~i~~~~~g~--~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
++. ++.++.++..+.+. +..|+.+.++.+...|.-++.+++|+.=
T Consensus 86 S~~--~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 86 SQL--PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred cCC--HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 875 45667887644566 8889888888899999999999998853
No 115
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.50 E-value=0.63 Score=47.14 Aligned_cols=238 Identities=15% Similarity=0.095 Sum_probs=135.7
Q ss_pred hhhHHHHHHHhCC-----CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc----CCC----HHHHHHHHHH
Q 021242 5 RRTVRSLVTKLGS-----VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY----SSS----HAFQENAAAT 71 (315)
Q Consensus 5 ~~~i~~Lv~~L~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~~~ 71 (315)
-+++..+++++.+ +..+.-...+..|..+++- +.||+.+.+.|+++.|+..|. ... +++-+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3556677777754 3345555666666677766 789999999999999999985 222 3455555555
Q ss_pred HHhcCcccc----h---hhhh-------hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccH
Q 021242 72 LLNLSITSR----D---SLMS-------TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDII 136 (315)
Q Consensus 72 L~~la~~~~----~---~~i~-------~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i 136 (315)
+--+..... . .... ...-++.+++.+.++....++.+....+++|-+|+..+ +....+.+. +
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~---F 271 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH---F 271 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH---H
Confidence 533332211 1 1010 11236666666665332346777888899999999644 444444431 3
Q ss_pred HHHHHHhhcc---CCChHHHHHHHHHHHHhcc----CC---CcHHHHHhhCCcHHHHHHHhcC-CC------cch-----
Q 021242 137 HSLIEIIKTR---NSPLRSVKDALKALFGIAL----YP---LNRYQVIALGGVQPLFSLVVNG-GR------AGI----- 194 (315)
Q Consensus 137 ~~Lv~ll~~~---~~~~~~~~~a~~aL~~Ls~----~~---~~~~~i~~~g~v~~L~~lL~~~-~~------~~~----- 194 (315)
.+.+++=+.. ..+... .+..+..++. +. ..|..+++.|++...+++|..+ |. +++
T Consensus 272 ~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 4444422210 111222 2344444433 22 3467889999999999998642 21 112
Q ss_pred ---HHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 195 ---VEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 195 ---~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
...++.+|.-|+......+.++...+++.+..+=+.. ....+-..|=.+|-.++.
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvs--s~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVS--SEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCC--CccchHHHHHHHHHHHhc
Confidence 2347888888888665555556666674444433321 134444455555666653
No 116
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.47 Score=47.07 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCH--------------HHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSI--------------PYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i--------------~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
++..|..|+..|..+....+.|-+.+.=++.. ..++++|++.|..++..|+..++.+....+.+.+
T Consensus 307 ~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVM 386 (866)
T ss_pred CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHH
Confidence 34777777777777776655555444322221 3467778888888999999988888766554443
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhcc--CCChHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTR--NSPLRSVKDALKAL 160 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL 160 (315)
+..|+.+|.+ .+++++...+.-+..++. .+++++.| ..+.+++..- --.+++..+-++.+
T Consensus 387 -----v~eLl~fL~~----~d~~~k~~~as~I~~laEkfaP~k~W~i-------dtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 387 -----VKELLEFLES----SDEDFKADIASKIAELAEKFAPDKRWHI-------DTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred -----HHHHHHHHHh----ccHHHHHHHHHHHHHHHHhcCCcchhHH-------HHHHHHHHhcccccchhhHHHHHHHH
Confidence 5678888886 578999999999999994 45555544 4444555421 01234444455555
Q ss_pred HHhccCCCcHHHHHhh-CCcHHHHHHHhcCCCcchHHHHHHHHHHHh---cChhhH---HHHHhcCCHHHHHHHhhcCCC
Q 021242 161 FGIALYPLNRYQVIAL-GGVQPLFSLVVNGGRAGIVEDASAVIAQIA---GCEESV---DEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~~-g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~---~~~~~~---~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
.| +..+.......+- -++...- ++. -+...+..-+.|++..=. .++.+. ..+-+...+..+-+.+... .
T Consensus 451 a~-~~~e~~~y~~~rLy~a~~~~~-~~~-is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~-~ 526 (866)
T KOG1062|consen 451 AN-AFQELHEYAVLRLYLALSEDT-LLD-ISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH-S 526 (866)
T ss_pred hc-CCcchhhHHHHHHHHHHhhhh-hhh-hhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc-c
Confidence 44 2222222221110 1111111 111 124456667778777532 111111 1122233567777777765 2
Q ss_pred CChhHHHHHHHHHHHHhcc
Q 021242 234 SGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~ 252 (315)
.+..++..++.+|..|+..
T Consensus 527 s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 527 SDSTTKGYALTALLKLSSR 545 (866)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 4678898999999998764
No 117
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.44 E-value=0.057 Score=46.07 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC--CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHH
Q 021242 195 VEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT--GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGI 272 (315)
Q Consensus 195 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L 272 (315)
.-.++.+|..++++++.|..|.++..=--+..+|.+.. +..+..+--+++++..+.+.+.+++...+.. .+++|..
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~--TeIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT--TEIVPLC 173 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH--hhhHHHH
Confidence 44688899999999999999998875334444555431 2356788889999999999776667677777 8999999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHH
Q 021242 273 ADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 273 ~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+..++.|++..|.-|..|++.+
T Consensus 174 Lrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998766
No 118
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.43 E-value=0.014 Score=43.19 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCC-CcchHHHHHHHHHHHhc-ChhhHHHHHhc
Q 021242 153 VKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIAQIAG-CEESVDEFKKC 218 (315)
Q Consensus 153 ~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~ 218 (315)
+....+.|.||+. ++.++..+.+.|++|.++..-.-++ ++-+++-|..+++||+. ++++++.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4668899999998 6788899999999999998875443 45578889999999987 57777776553
No 119
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.39 E-value=0.028 Score=46.82 Aligned_cols=120 Identities=12% Similarity=-0.001 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCCCchhhhh---------------hccccHHHHHHHhhcc---C-CChHHHHHHHHHHHHhccCCCc
Q 021242 109 VQSSAATLHSLLVVDSYRPIIG---------------AKRDIIHSLIEIIKTR---N-SPLRSVKDALKALFGIALYPLN 169 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~---------------~~~g~i~~Lv~ll~~~---~-~~~~~~~~a~~aL~~Ls~~~~~ 169 (315)
...++..|.||+..++.+..+. ..+..+..|+..+..+ . ...+-..+.+..|.|+++.++.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 3456667777776665544221 1223578888887741 0 1234457889999999999999
Q ss_pred HHHHHhh--CC--cHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCC---HHHHHHHhh
Q 021242 170 RYQVIAL--GG--VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG---IGVLVDLLD 229 (315)
Q Consensus 170 ~~~i~~~--g~--v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~---i~~Lv~ll~ 229 (315)
|..+++. +. +..|+.+.. +++..-+.-++++|+|+|...+....+..... +|.++--|.
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~-~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTE-HKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999863 44 566777764 34444466799999999999888888876442 444444333
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.31 E-value=0.81 Score=41.50 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=108.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..++.+...|.+.++.+|..|+.+|..+-.. ..++.|+.++. +.+..++..|+++|..+-
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~------- 134 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGDP-----------EAVPPLVELLENDENEGVRAAAARALGKLG------- 134 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-------
Confidence 56789999999999999999999966666422 35899999998 477889999999998773
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHH------------HHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSA------------AVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~------------~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 151 (315)
....+..++..+++ .... .+..+...|.. ++. ...++.+...+. ..+..
T Consensus 135 --~~~a~~~l~~~l~~----~~~~~a~~~~~~~~~~~r~~a~~~l~~----------~~~-~~~~~~l~~~l~--~~~~~ 195 (335)
T COG1413 135 --DERALDPLLEALQD----EDSGSAAAALDAALLDVRAAAAEALGE----------LGD-PEAIPLLIELLE--DEDAD 195 (335)
T ss_pred --chhhhHHHHHHhcc----chhhhhhhhccchHHHHHHHHHHHHHH----------cCC-hhhhHHHHHHHh--CchHH
Confidence 55568888888875 2211 12222222222 333 234788888888 44668
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 152 SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 152 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
++..|..+|..+.... ..+.+.+...+. +++..++..++..|..+
T Consensus 196 vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~-~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 196 VRRAAASALGQLGSEN--------VEAADLLVKALS-DESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHHHHhhcch--------hhHHHHHHHHhc-CCCHHHHHHHHHHhccc
Confidence 8899999998877654 345566677764 55666776666666654
No 121
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.26 E-value=0.018 Score=42.30 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh-hhcCchHHHHHHHhcCC
Q 021242 23 RAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM-STRGLLDAISHVLRHHS 101 (315)
Q Consensus 23 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i-~~~~~i~~L~~lL~~~~ 101 (315)
|..++..|+..+..-+.. ..-.-.-++|+++..+.+++..+|..|+.+|+|++..-+..++ .-...++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D-- 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD-- 79 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 567778888776443222 1111256799999999999999999999999999876553332 345577888888876
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 021242 102 TSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 102 ~~~~~~~~~~a~~~L~~Ls 120 (315)
.++.++ .++..|-+|-
T Consensus 80 --~d~~Vr-~~a~~Ld~ll 95 (97)
T PF12755_consen 80 --PDENVR-SAAELLDRLL 95 (97)
T ss_pred --CchhHH-HHHHHHHHHh
Confidence 455555 5667776653
No 122
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.75 Score=44.18 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCccc-chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHH
Q 021242 62 HAFQENAAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLI 140 (315)
Q Consensus 62 ~~~~~~a~~~L~~la~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 140 (315)
..++..+++++..++..+ ....+ + ..+..|-.+|++ .+...+..|.++|..|++..+-+..... .. ++.|+
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~-~-~~vs~L~~fL~s----~rv~~rFsA~Riln~lam~~P~kv~vcN-~e-vEsLI 349 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFV-D-QTVSSLRTFLKS----TRVVLRFSAMRILNQLAMKYPQKVSVCN-KE-VESLI 349 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHH-H-HHHHHHHHHHhc----chHHHHHHHHHHHHHHHhhCCceeeecC-hh-HHHHh
Confidence 557777777777776554 22222 1 246667777776 5677888999999999987665655543 23 44443
Q ss_pred HHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh------hhHHH
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE------ESVDE 214 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~------~~~~~ 214 (315)
. +.+..+..+|..+|.. .-..++...++ ..++.++.=+. ++..-+.-.|+..|+++--.. .--..
T Consensus 350 ---s--d~Nr~IstyAITtLLK-TGt~e~idrLv--~~I~sfvhD~S-D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~ 420 (898)
T COG5240 350 ---S--DENRTISTYAITTLLK-TGTEETIDRLV--NLIPSFVHDMS-DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS 420 (898)
T ss_pred ---h--cccccchHHHHHHHHH-cCchhhHHHHH--HHHHHHHHhhc-cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 4 2344566777777765 33455555544 23444443332 223333444555555431110 11122
Q ss_pred HHhcCC-------HHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 021242 215 FKKCCG-------IGVLVDLLDLGTGSGHRVKENAVSALLNL 249 (315)
Q Consensus 215 i~~~~~-------i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l 249 (315)
+.+.|| +..+.+++.. .+..||.++..|+..
T Consensus 421 L~~eGg~eFK~~~Vdaisd~~~~----~p~skEraLe~LC~f 458 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDAMEN----DPDSKERALEVLCTF 458 (898)
T ss_pred HHhcccchHHHHHHHHHHHHHhh----CchHHHHHHHHHHHH
Confidence 334454 4555556654 456666655544443
No 123
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.10 E-value=0.1 Score=45.23 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcccchh---hhhhcCchHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSITSRDS---LMSTRGLLDA 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~~~~~---~i~~~~~i~~ 92 (315)
.-...|+..+..+|.+ ++.|..+.++...--|..+|+..+ +.+|-..+.+++.+...++.+ ...+.+.+|.
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 4556677777777765 899999999998777788886533 347888999999998876543 3458899999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
.++.+.. ++.-.+..|..++..+-.++.+-..+.+. ..++..++.-+.. ..++...+...++-..|+.
T Consensus 144 cLr~me~----GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~-~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 144 CLRIMEF----GSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK-QPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHH----S-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHh----ccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHcc
Confidence 9999997 67777888999998887776553333222 2234444543332 3478889999999999999
Q ss_pred CCCcHHHHH
Q 021242 166 YPLNRYQVI 174 (315)
Q Consensus 166 ~~~~~~~i~ 174 (315)
++..+..+.
T Consensus 219 nprar~aL~ 227 (262)
T PF04078_consen 219 NPRAREALR 227 (262)
T ss_dssp STTHHHHHH
T ss_pred CHHHHHHHH
Confidence 998888775
No 124
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.16 Score=49.91 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~ 79 (315)
+..+.++...+++.++.+|..|+....++-.. +.+.....|.++.|-+++.+.++.+..+|+.+|..+...+
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 45667888999999999999999888888533 4557778999999999999999999999999998887654
No 125
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.47 Score=46.93 Aligned_cols=221 Identities=13% Similarity=0.132 Sum_probs=139.6
Q ss_pred hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHH-hcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHH--HHHHH
Q 021242 39 EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLL-NLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQ--SSAAT 115 (315)
Q Consensus 39 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~--~a~~~ 115 (315)
.-+...++.|+...|+.|...+.+....++..+|. .+++..++. ...++++.+.+.+ +....+ .+..+
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~----~~v~~~~~s~~~~-----d~~~~en~E~L~a 565 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS----YEVVKPLDSALHN-----DEKGLENFEALEA 565 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch----hhhhhhhcchhhh-----hHHHHHHHHHHHH
Confidence 44667788999999999999888888888888886 444433321 1235555555543 223332 58889
Q ss_pred HHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH-HHHh-hCCcHHHHHHHhcCCCc
Q 021242 116 LHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY-QVIA-LGGVQPLFSLVVNGGRA 192 (315)
Q Consensus 116 L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~-~i~~-~g~v~~L~~lL~~~~~~ 192 (315)
+.||++.+ ..|..+...-+ ++.+-.++. .+++..+..++..+.||..++..-. .+++ ...++.....+. ....
T Consensus 566 ltnLas~s~s~r~~i~ke~~-~~~ie~~~~--ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e-~~~E 641 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKA-LGKIEELMT--EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE-VADE 641 (748)
T ss_pred hhcccCcchhhHHHHHHHhc-chhhHHHhh--cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH-hhhh
Confidence 99999744 44555654335 566666665 5678899999999999999887654 3445 455666665554 2233
Q ss_pred chHHHHHHHHHHHhcC-hhhHHHHH-hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHH
Q 021242 193 GIVEDASAVIAQIAGC-EESVDEFK-KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVAD 270 (315)
Q Consensus 193 ~~~~~a~~~L~~L~~~-~~~~~~i~-~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~ 270 (315)
...-.+++.+..++.. ...+..+. -..+-..++.++.++ +..+|.....+..++.. ...+....+.. ...++
T Consensus 642 ~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~---~~~~qhrgl~~~ln~~~-~~~ei~~~~~~--~~~~~ 715 (748)
T KOG4151|consen 642 KFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE---DDEIQHRGLVIILNLFE-ALFEIAEKIFE--TEVME 715 (748)
T ss_pred HHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc---hhhhhhhhhhhhhhHHH-HHHHHHHHhcc--chHHH
Confidence 3444455566645443 33333232 234678888888876 78888888888888643 22234455554 55666
Q ss_pred HHHHHHhh
Q 021242 271 GIADVAQN 278 (315)
Q Consensus 271 ~L~~ll~~ 278 (315)
.+..+-..
T Consensus 716 ~l~~~~~~ 723 (748)
T KOG4151|consen 716 LLSGLQKL 723 (748)
T ss_pred HHHHHHHh
Confidence 66554443
No 126
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.12 Score=50.92 Aligned_cols=190 Identities=11% Similarity=0.073 Sum_probs=125.0
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hhcCCCchhhhhhccccHHHHHHHhhccCCChHH--HHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS-LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS--VKDAL 157 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~--~~~a~ 157 (315)
+...+++|+.+.|+.+... +.+..+.....+|.. +. ++..+ ....++++.+.+.. +... ...++
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~-f~~~~-----~~~v~~~~~s~~~~---d~~~~en~E~L 563 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKID-FPGER-----SYEVVKPLDSALHN---DEKGLENFEAL 563 (748)
T ss_pred cCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcC-CCCCc-----hhhhhhhhcchhhh---hHHHHHHHHHH
Confidence 4455699999999999985 567778777777772 11 11111 12346777777762 2222 34689
Q ss_pred HHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCC
Q 021242 158 KALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGS 234 (315)
Q Consensus 158 ~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~ 234 (315)
.+|.||++ +...|..+++.-+++-+-.++. +.++..+..++..+.||..++......+-.+ +.+-....+...
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~--- 639 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA--- 639 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh---
Confidence 99999998 4556777887766665555554 4567788889999999988877666554332 566666666543
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
..+..-.+++++..|+.-.. .++..+.+ -......+..++.++++.++.--..
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~-n~c~~~~~-~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVE-NHCSRILE-LLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred hhHHhhhccccccchhhcch-hhhhhHHH-hhcchHHHHHhhcCchhhhhhhhhh
Confidence 56777777788887765433 23222333 2467888888999888877765444
No 127
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.80 E-value=1.9 Score=41.59 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=63.9
Q ss_pred hhhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHH----HHcCCCH-HHHHHHHHHHHhcC
Q 021242 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAE----ILYSSSH-AFQENAAATLLNLS 76 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~----lL~~~~~-~~~~~a~~~L~~la 76 (315)
|+|+..-.-..+.|+++.|.....|...+..++.-. .-+|..|-|.. ....+.| .....++.++.+.+
T Consensus 90 E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 90 ESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 344444445667788888888888888888777432 12344444444 4433333 57888999999988
Q ss_pred cccch-hhhhhcCc-hHHH-HHHHhcCCCCCCHHHHHHHHHHHHH
Q 021242 77 ITSRD-SLMSTRGL-LDAI-SHVLRHHSTSTSSAAVQSSAATLHS 118 (315)
Q Consensus 77 ~~~~~-~~i~~~~~-i~~L-~~lL~~~~~~~~~~~~~~a~~~L~~ 118 (315)
....+ .++...+. +-.+ ...++. ..+..++..+..+|.+
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~---et~~avRLaaL~aL~d 204 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKN---ETTSAVRLAALKALMD 204 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhccc---CchHHHHHHHHHHHHH
Confidence 87654 34433332 2223 333343 2345567777788877
No 128
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.41 Score=46.52 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=106.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch------hhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc---
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE------IRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI--- 77 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~--- 77 (315)
...+.++.|+..+.++|..|+..++.+.+.-+. +...+.+ .+...+.+.+.+..-.++-.|+++|+.+-.
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 356788888999999999999999988766521 1222222 335555666654333333333333322100
Q ss_pred -------------------------------c-----c-----------c--hhhhhhcCchHHHHHHHhcCCCCCCHHH
Q 021242 78 -------------------------------T-----S-----------R--DSLMSTRGLLDAISHVLRHHSTSTSSAA 108 (315)
Q Consensus 78 -------------------------------~-----~-----------~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~ 108 (315)
+ . + ..-++.+|+-..++.=|.+ +--++
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED----Ef~EV 389 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED----EFYEV 389 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechH----HHHHH
Confidence 0 0 0 0112345556666666664 45588
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhc
Q 021242 109 VQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~ 188 (315)
+..|...++.|+.+.+. +.. .. +..|++++. ++...++..|+.+|..++.+-. ++..-++.++..|.
T Consensus 390 R~AAV~Sl~~La~ssP~---FA~-~a-ldfLvDMfN--DE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~- 456 (823)
T KOG2259|consen 390 RRAAVASLCSLATSSPG---FAV-RA-LDFLVDMFN--DEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLE- 456 (823)
T ss_pred HHHHHHHHHHHHcCCCC---cHH-HH-HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHH-
Confidence 88999999999964432 333 24 899999998 5567888999999998887522 22333455555554
Q ss_pred CCCcchHHHHHHHHHH
Q 021242 189 GGRAGIVEDASAVIAQ 204 (315)
Q Consensus 189 ~~~~~~~~~a~~~L~~ 204 (315)
+.+..+++..-.+|++
T Consensus 457 D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 457 DRSVDVREALRELLKN 472 (823)
T ss_pred hcCHHHHHHHHHHHHh
Confidence 3344555544444443
No 129
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=2.4 Score=41.78 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=30.2
Q ss_pred HhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCC--HHHHHHHhh
Q 021242 174 IALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG--IGVLVDLLD 229 (315)
Q Consensus 174 ~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~--i~~Lv~ll~ 229 (315)
++.+++..++++.. .++.++..|+..+-..-..+...+.++..|| +...-.++.
T Consensus 457 vsdeVW~RvvQiVv--Nnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa 512 (938)
T KOG1077|consen 457 VSDEVWYRVVQIVV--NNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIA 512 (938)
T ss_pred ccHHHHHHhheeEe--cchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhc
Confidence 34455666666664 2455666666666655555566666666664 333333443
No 130
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.57 E-value=3 Score=42.48 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=103.2
Q ss_pred HHHHhCC--CCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhhh
Q 021242 11 LVTKLGS--VSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSLM 84 (315)
Q Consensus 11 Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~i 84 (315)
.++.|.+ .++++++.|..++..+...-. ..+.. ...+|.+++-|+ +.-.+-.|++++..++..+ . ...-
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhh
Confidence 3445543 468999999988887753311 12221 345666666664 4457788999998887765 2 2222
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.-..+++.+.++++. .....+.....++..|.. .+.......+ .++..+-.++. ..+..+...|...|..
T Consensus 648 ~l~~il~~l~~flrK----~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e--~vL~el~~Lis--esdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 648 VLTEILPELASFLRK----NQRALRLATLTALDKLVKNYSDSIPAELLE--AVLVELPPLIS--ESDLHVTQLAVAFLTT 719 (1233)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHhhhhhh--HHHHHHHHHHHHHHHH
Confidence 234578899999975 344555556666666653 1222222222 33555556666 3467788889999998
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
+...+.....-+..-.++.++.+++
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLR 744 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhh
Confidence 8887766666666788888898886
No 131
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.56 E-value=0.71 Score=40.07 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=94.2
Q ss_pred ChHHHHHHHHHHHHhccC-CCcHHHHHh-hCCcHHHHHHHhcC-C---Ccch-------HHHHHHHHHHHhcChhhHHHH
Q 021242 149 PLRSVKDALKALFGIALY-PLNRYQVIA-LGGVQPLFSLVVNG-G---RAGI-------VEDASAVIAQIAGCEESVDEF 215 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~~-~g~v~~L~~lL~~~-~---~~~~-------~~~a~~~L~~L~~~~~~~~~i 215 (315)
+++.++.|+.-|+.--.. ++-.-.+-. -|.+..|++=+.+- | .+.+ .-.|+++|..++++++.|..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567778777777653332 333333333 47777766544321 1 1111 223778888889999999999
Q ss_pred HhcCCHHHHHHHhhcCC--CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 021242 216 KKCCGIGVLVDLLDLGT--GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~ 293 (315)
.++...--|...|.... +..+..|-.+.+++..+.+.+..++...+.+ .+.+|..+..++.|++..|.-|..+++.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~--tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ--TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC--TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh--hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99885444444554421 1135677889999999998665566666766 7899999999999999999999999877
Q ss_pred H
Q 021242 294 L 294 (315)
Q Consensus 294 l 294 (315)
+
T Consensus 166 I 166 (262)
T PF04078_consen 166 I 166 (262)
T ss_dssp H
T ss_pred H
Confidence 6
No 132
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.50 E-value=1.7 Score=38.82 Aligned_cols=172 Identities=14% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCHHHHH-HHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 48 GSIPYLA-EILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 48 g~i~~Lv-~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
+.+..|+ +-+++.++.+|+.|+.+|+-++.-+.+.. ...++.+...++. ++++++..|+.+|..+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a---~~~l~l~~~~~~~----~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA---KEHLPLFLQALQK----DDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCch
Confidence 4454554 66788899999999999988886654211 1246777777865 67899999999999988533211
Q ss_pred h--hhh------hccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC---CCcchH
Q 021242 127 P--IIG------AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNG---GRAGIV 195 (315)
Q Consensus 127 ~--~i~------~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~---~~~~~~ 195 (315)
. ... ....++..+.+.+. +.+++++..|+..+..|-....... ...++..|+-+.-+. ++..++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence 1 111 11246677888888 5588899999999988776543333 122333443333221 122333
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
..-...+-..+......+..+....++.+-.+....
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 333345566666655555666667778877777654
No 133
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.28 Score=48.27 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=78.6
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
..++.++...++++|.+|.-|++.+..+--. . +..-.+.+|.+.+++.++-+|..++....++- +.++....
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~-----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~-~~~~~~~~ 157 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--K-----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF-DIDPDLVE 157 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--H-----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh-cCChhhcc
Confidence 4556666666777788887777777665422 2 22334778899999999989888877776553 23455666
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 124 (315)
..|.++.|.+++.+ +++.+..+|..+|..+...+.
T Consensus 158 ~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 158 DSGLVDALKDLLSD----SNPMVVANALAALSEIHESHP 192 (734)
T ss_pred ccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhCC
Confidence 88999999999996 688999999999999986544
No 134
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.32 E-value=0.65 Score=44.28 Aligned_cols=167 Identities=13% Similarity=0.117 Sum_probs=109.4
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCC--ChHHHHHHHHHHHHhccC
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS--PLRSVKDALKALFGIALY 166 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~aL~~Ls~~ 166 (315)
....+..++.+ ++...+..+...|..|+........+..+.| +..|..++.+... ...+....++++..+--+
T Consensus 84 ~a~~i~e~l~~----~~~~~~~~a~k~l~sls~d~~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmeh 158 (713)
T KOG2999|consen 84 YAKRIMEILTE----GNNISKMEALKELDSLSLDPTFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEH 158 (713)
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 46678888887 6777777788888888877766666666678 8999999984211 224455666666655432
Q ss_pred CCcHHHHHhhCCcHHHHHHHhc-CCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVN-GGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
.-..-..+...+|..+..+... .-+..+...|+..|-++..+ +..++.+.++--+..|+..++.. +..++.+|..
T Consensus 159 gvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~---n~~i~~~aia 235 (713)
T KOG2999|consen 159 GVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS---NQRIQTCAIA 235 (713)
T ss_pred ceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc---chHHHHHHHH
Confidence 2211122222333334444321 12445677899999988665 44666666666799999999975 7788888888
Q ss_pred HHHHHhccCCHHHHHHHHH
Q 021242 245 ALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~ 263 (315)
.+..+.....++-+.+|.+
T Consensus 236 l~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHhhCChHHHHHHHH
Confidence 8888877655555566655
No 135
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.29 E-value=1.5 Score=39.55 Aligned_cols=193 Identities=19% Similarity=0.149 Sum_probs=110.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc----cch
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSIT----SRD 81 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~----~~~ 81 (315)
+...+..+.......|..|+..|........ ....+.+ .-.++.+.+.++.+..+-+..|+.++.-++.. ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 5567777777788999999999999886643 2233332 44578888888777665566677766555544 222
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHH--Hhhcc--------CCCh
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIE--IIKTR--------NSPL 150 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~--ll~~~--------~~~~ 150 (315)
..+ -....|.|.+++.+.+ ..+..+..++.+|.-++... ..-..+...-..+..++. ..+.. .+++
T Consensus 124 ~ei-~~~~~~~L~~~l~d~s--~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEI-FEELKPVLKRILTDSS--ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHH-HHHHHHHHHHHHhCCc--cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 222 2347888889988632 34566666666666665422 111111110011332222 22211 1124
Q ss_pred HHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 151 RSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
.+...|+.+-.-|.. -+.....-.-...+|.|..+|. +++..++..|-..|.-|
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~-s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD-SDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 566667655444443 2332222222467899999996 46788877766565554
No 136
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.7 Score=47.32 Aligned_cols=259 Identities=13% Similarity=0.082 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHh
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~ 98 (315)
+.|..|-+.......++. .. ..=+|.+++.|-|+.. |..|+..|..+---.+ ..+...-|..|-++++|+
T Consensus 451 teQLTAFevWLd~gse~r---~P---PeQLPiVLQVLLSQvH--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ 522 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESR---TP---PEQLPIVLQVLLSQVH--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ 522 (1387)
T ss_pred HHHHHHHHHHHHhccccC---CC---hHhcchHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc
Confidence 455566555555443221 10 1114555665544322 2334455544322222 234346789999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHh-hcCCCchhhhhhccccHHHHHHHhhc-cCCChHHHHHHHHHHHHhccC-CCcHHHHHh
Q 021242 99 HHSTSTSSAAVQSSAATLHSL-LVVDSYRPIIGAKRDIIHSLIEIIKT-RNSPLRSVKDALKALFGIALY-PLNRYQVIA 175 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~ 175 (315)
+ +..|++..-+.+=..+ +.++.+..-+...+| -...+..|.. ..-+++=+..|+=+|..++.+ +-.++...+
T Consensus 523 S----~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g-~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~ 597 (1387)
T KOG1517|consen 523 S----SARELRPILVFIWAKILAVDPSCQADLVKENG-YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN 597 (1387)
T ss_pred c----chHhhhhhHHHHHHHHHhcCchhHHHHHhccC-ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence 7 6778776554444444 445555444444456 4666677663 122345566788888888874 455666677
Q ss_pred hCCcHHHHHHHhcCCCcchHHH-HHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 176 LGGVQPLFSLVVNGGRAGIVED-ASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~-a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
.+.+..-+..|.+++ .++... ++-.|..|=. .++.|=.-.+.++..+|+.+|.+. .++++..|+-+|..+-..+
T Consensus 598 ~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~---vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP---VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc---cHHHHHHHHHHHHHHhccc
Confidence 788887778886323 344433 4445555533 233333334455689999999864 8999999999988887632
Q ss_pred ---CHHHHHHH---HH-----H-ccCcHH----HHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 254 ---GERAAEEV---KE-----M-AMQVAD----GIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 254 ---~~~~~~~i---~~-----~-~~g~~~----~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.++....+ +. . .+..++ .++.+++.++|.++...+-.|..+..
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111 10 0 022333 67788889999999998888877743
No 137
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.26 E-value=0.9 Score=37.31 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCH-HHHHHHHcCCCHHHHHHHHHHHHhcCcccchh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSI-PYLAEILYSSSHAFQENAAATLLNLSITSRDS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i-~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~ 82 (315)
+.+++.+...|++++|.+|..|+..|..|...+. ++ .|-+ ..++.++.+++++++..|..++..+.....+.
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccch
Confidence 4578899999999999999999999999986542 22 3444 88888999999999999999999988774333
Q ss_pred hhhhcCchHHHHHHHh
Q 021242 83 LMSTRGLLDAISHVLR 98 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~ 98 (315)
.+ ...++.++..|.
T Consensus 98 ~i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 98 II--YNNFPELISSLN 111 (178)
T ss_pred HH--HHHHHHHHHHHh
Confidence 22 123455555554
No 138
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.35 Score=48.27 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII 129 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 129 (315)
+..+.+=+++.++.+|..|++++..+= .+++ -...++++.+.+.+ +++.++..|+-++..+=.. .+..+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~---~~el--~~~~~~~ik~~l~d----~~ayVRk~Aalav~kly~l--d~~l~ 162 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR---VKEL--LGNIIDPIKKLLTD----PHAYVRKTAALAVAKLYRL--DKDLY 162 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC---hHHH--HHHHHHHHHHHccC----CcHHHHHHHHHHHHHHHhc--CHhhh
Confidence 444445556788899999999886652 1222 22367888888887 7889999999888886532 23444
Q ss_pred hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 130 GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 130 ~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+ .|.+..+..++. +.+|.+..+|+.+|..+...
T Consensus 163 ~~-~g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 HE-LGLIDILKELVA--DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hc-ccHHHHHHHHhh--CCCchHHHHHHHHHHHhchh
Confidence 44 466788888887 56899999999999987754
No 139
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=1.5 Score=45.03 Aligned_cols=225 Identities=15% Similarity=0.055 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHH-HhcCcccc--hhhhhhcCchHHHHHHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATL-LNLSITSR--DSLMSTRGLLDAISHVL 97 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L-~~la~~~~--~~~i~~~~~i~~L~~lL 97 (315)
.=|..|+..|..+..-.+=.-..-..-|+.|-+++||+++..+++-.-+-+= .-||.++. ..++ +.+|-.-.+++|
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv-Ke~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV-KENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH-hccCceeEEEEe
Confidence 3466777777777766554445555689999999999998887765433333 34666654 3444 555555555566
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CCcHHHHHh
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIA 175 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~ 175 (315)
.... .-+++-+..|+.+|..+.. ++-+.....+ +++|..-+..+.++ ..+=.+..++-+|..|=.+ ++.|-.=++
T Consensus 564 ~~~~-~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~-~~pLLrQW~~icLG~LW~d~~~Arw~G~r 640 (1387)
T KOG1517|consen 564 DPSQ-AIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDD-PEPLLRQWLCICLGRLWEDYDEARWSGRR 640 (1387)
T ss_pred cCcC-CCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCC-ccHHHHHHHHHHHHHHhhhcchhhhcccc
Confidence 5311 1345777788888888885 4444444433 46566555566521 1344556666777777664 445555567
Q ss_pred hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-----ChhhHHHH---Hh--------cC----CHHHHHHHhhcCCCCC
Q 021242 176 LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-----CEESVDEF---KK--------CC----GIGVLVDLLDLGTGSG 235 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-----~~~~~~~i---~~--------~~----~i~~Lv~ll~~~~~~~ 235 (315)
.++...|+.+|. ++-++++..|.-+|..+-+ .++....+ ++ +. |...++.+++.+ +
T Consensus 641 ~~AhekL~~~Ls-D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg---s 716 (1387)
T KOG1517|consen 641 DNAHEKLILLLS-DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG---S 716 (1387)
T ss_pred ccHHHHHHHHhc-CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc---c
Confidence 899999999995 6777888887777777644 22322222 11 11 223666777776 7
Q ss_pred hhHHHHHHHHHHHHhccC
Q 021242 236 HRVKENAVSALLNLVNFG 253 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~ 253 (315)
+-++...+.+|..+...+
T Consensus 717 plvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 717 PLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 777777777777776533
No 140
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.90 E-value=0.67 Score=42.15 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=134.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhH-----HHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRP-----MISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
+.+..|+..|..-+.+.|..++....++.......+. .+.. ..++..|+.-- +++++--.+-..|+.+..+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 4567788888888899999999999988877655433 3332 23333333333 3556666788888999988
Q ss_pred cc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhh-hhhc-cccHHHHHHHhhccCCChHHHH
Q 021242 79 SR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPI-IGAK-RDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 79 ~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~-i~~~-~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
+. .+++.....+..+.++... ++-++...|..++..|-. ++..... +... ..++...-.+|. +++.-.+.
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~--s~NYvtkr 227 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE--SSNYVTKR 227 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT---SSHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc--CCCeEeeh
Confidence 76 5565567788888888886 688988889999998664 4433222 2221 245666677888 56888999
Q ss_pred HHHHHHHHhccCCCcHHHHHh----hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 155 DALKALFGIALYPLNRYQVIA----LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~~~~~i~~----~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
.+++.|..|-.++.|...|.+ ..-+..++.+|+ +++..++-.|.-+......+|
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-S
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhCC
Confidence 999999999999999876654 244666777775 577889999998888765544
No 141
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.80 E-value=0.15 Score=44.82 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcC--chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRG--LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~--~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
+..+...+.+..++-+.-++..++-+..+.+ .......+ ....+..++........+..+..+++++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4556666666555556777788877777765 34443222 35666666664332346677888999999998888888
Q ss_pred hhhhhccc-cHHHHHHHhhccCC--ChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHH
Q 021242 127 PIIGAKRD-IIHSLIEIIKTRNS--PLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASA 200 (315)
Q Consensus 127 ~~i~~~~g-~i~~Lv~ll~~~~~--~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~ 200 (315)
..+....+ .+...+..+..... +..++..++..+.|++.. ......-.+...+..+.+.+... .+++....++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 87776433 23333333331100 456777888889999851 11100001112244455533222 46778888999
Q ss_pred HHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 201 VIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 201 ~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
+|.+|...+.........=++...+...... ...+++++.+
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~-~~e~ri~~v~ 265 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANK-SKEPRIKEVA 265 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHH-TTSHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhc-ccchHHHHHh
Confidence 9999987665555554433444444433221 1256666554
No 142
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.72 E-value=2.3 Score=42.31 Aligned_cols=269 Identities=12% Similarity=0.138 Sum_probs=150.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC--------HHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS--------HAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~~~~~a~~~L~~la 76 (315)
+...-.+++.+.+++.+.+.-.+..+..++.. +..-........+|.+........ ..+...++.+=.
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t-~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~--- 710 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCAT-DGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA--- 710 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc-cCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH---
Confidence 34455677777888878877777777777754 233334444455666655553210 011111111110
Q ss_pred cccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC---CCchhhhhhccccHHHHHHHhhccCCChHHH
Q 021242 77 ITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV---DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSV 153 (315)
Q Consensus 77 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 153 (315)
.+.....+..++.=+++ +.++.+...++++..+-.. .+.-..+.+ -++..++-.++..+.+..+.
T Consensus 711 ------KvG~~~~v~R~v~~lkd----e~e~yrkm~~etv~ri~~~lg~~diderleE--~lidgil~Afqeqtt~d~vm 778 (1172)
T KOG0213|consen 711 ------KVGSDPIVSRVVLDLKD----EPEQYRKMVAETVSRIVGRLGAADIDERLEE--RLIDGILYAFQEQTTEDSVM 778 (1172)
T ss_pred ------HhCchHHHHHHhhhhcc----ccHHHHHHHHHHHHHHHhccccccccHHHHH--HHHHHHHHHHHhcccchhhh
Confidence 01122235555555665 6777887777777665432 122222222 34566666565322333455
Q ss_pred HHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCH-HHHHHHhhcCC
Q 021242 154 KDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGI-GVLVDLLDLGT 232 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i-~~Lv~ll~~~~ 232 (315)
.....+..| +.....+..+ .-.+...+..|+ ++.+.+++.|+.+++.++.--.++.+....|-+ -.|...|..
T Consensus 779 l~gfg~V~~-~lg~r~kpyl--pqi~stiL~rLn-nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-- 852 (1172)
T KOG0213|consen 779 LLGFGTVVN-ALGGRVKPYL--PQICSTILWRLN-NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-- 852 (1172)
T ss_pred hhhHHHHHH-HHhhccccch--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc--
Confidence 566666655 2222211111 122345566665 567888999999988887644444333322311 345566654
Q ss_pred CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCC
Q 021242 233 GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
+++++....++++..|+..-. - ..|..+-.|.+|.|..++++.-.++++++..++-.+..-+.
T Consensus 853 -eypEvLgsILgAikaI~nvig-m--~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 853 -EYPEVLGSILGAIKAIVNVIG-M--TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred -ccHHHHHHHHHHHHHHHHhcc-c--cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 388888888888777764211 0 11221126899999999999999999999999888765433
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.71 E-value=0.039 Score=31.18 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCc
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~ 77 (315)
+|.++++++++++++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999988753
No 144
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.69 E-value=3.1 Score=37.29 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHH-HhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc-hhhh-hhcCch
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMI-SEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSR-DSLM-STRGLL 90 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~-~~~i-~~~~~i 90 (315)
++-++-.+.-|+.++.++... ++.|+.+ .++..-..++..++. .+..+|=+.+-++|.+++++. .+.+ .--+.+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344566788888888888754 6666544 456566777888865 345688889999999998875 2222 123457
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCc--hhhhhhccccHHHHHHHhhccC-CChHHHHHH---HHHHH--
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSY--RPIIGAKRDIIHSLIEIIKTRN-SPLRSVKDA---LKALF-- 161 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~--~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~~a---~~aL~-- 161 (315)
..|+++.+. .....+...+++++.|+.. .+.. ...+.. +. +.+-+++|.... .|.+.+..- -..|-
T Consensus 238 ~dli~iVk~---~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 238 NDLIAIVKE---RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-ND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 777888874 1233455578888888875 3221 222222 34 566666665321 122222110 01111
Q ss_pred ------------Hh-----ccC---------CCcHHHHHh--hCCcHHHHHHHhcCCCcc-hHHHHHHHHHHHh-cChhh
Q 021242 162 ------------GI-----ALY---------PLNRYQVIA--LGGVQPLFSLVVNGGRAG-IVEDASAVIAQIA-GCEES 211 (315)
Q Consensus 162 ------------~L-----s~~---------~~~~~~i~~--~g~v~~L~~lL~~~~~~~-~~~~a~~~L~~L~-~~~~~ 211 (315)
.| +-+ .+|...+.+ -..+..|.++++.. ++. ...-||.=+..+- ..|++
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchH
Confidence 00 101 234444443 25677888888643 333 3344555444443 47999
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
+..+...|+=..+..++.+. ++++|-.|+.++..+-
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~---d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHD---DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCC---CchhhHHHHHHHHHHH
Confidence 99999999989999999986 8999999999887653
No 145
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.68 E-value=0.37 Score=41.87 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCccc-c-hhhhhhcCchHHHHHHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITS-R-DSLMSTRGLLDAISHVL 97 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i~~L~~lL 97 (315)
.....|+..|.-++--.+..|..+.+...+..|+++|.. ..+.++..++.+|..+-.+. . .+.+.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 356678899998887889999999999999999999954 56789999999997766654 3 35677999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhh
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
++.+ .+.+++..+...|.-..
T Consensus 186 k~~~--~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKS--TDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccc--ccHHHhHHHHHHHHHHH
Confidence 9754 35677777777776444
No 146
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.65 E-value=0.077 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSK 35 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~ 35 (315)
+|.++++++++++++|..|+.+|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 147
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.64 E-value=1.5 Score=39.17 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=103.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh---------
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL--------- 83 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~--------- 83 (315)
..+.++++.+|..|+++|.-++--+.+ +.. ..++.+...++.+++.++..|+++++.+...-+...
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKE----LAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChH----HHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 566889999999999999999876653 222 237788888877788999999999988765422111
Q ss_pred -hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-C-CChHHHHHHHH-H
Q 021242 84 -MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-N-SPLRSVKDALK-A 159 (315)
Q Consensus 84 -i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~-~~~~~~~~a~~-a 159 (315)
......++.+.+++.+ .+++++..++..+..|-..+-... ...++..|+-+.-++ + ++... +.++. .
T Consensus 109 ~~~~~~l~~~l~~~l~~----~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~L-rQ~L~~F 179 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDS----ENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRL-RQCLSVF 179 (298)
T ss_pred cchHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHH-HHHHHHH
Confidence 1133466777778876 678899999999998875443222 113344444433322 1 22333 44443 3
Q ss_pred HHHhccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 160 LFGIALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
+-..+......+..+..+.+|.+..+..
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4455655544455566788888877775
No 148
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.53 E-value=0.8 Score=43.69 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=103.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCc----chHHHHHHHHHHHhcChhhH
Q 021242 137 HSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRA----GIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 137 ~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~----~~~~~a~~~L~~L~~~~~~~ 212 (315)
..+..++. +++...+..|...|..++.++.-...+++..++..|.+++.+ +.. .+...++..+..+....-..
T Consensus 86 ~~i~e~l~--~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~lied-g~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 86 KRIMEILT--EGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIED-GRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHc-CccchHHHHHHHHHHHHHHHHhhceee
Confidence 45667777 567788888999999999999999999999999999999974 322 22233444444432221100
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
=..+...+|.....+.... ..+..+-..|+.+|-++..++ +...+.+.+ .--++.|+..++..+.++..+|..+++
T Consensus 163 W~~~~~~fV~~~a~~V~~~-~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~e--ev~i~~li~hlq~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAK-REDANTLLAALQMLESLVLGS-DTLRQLVAE--EVPIETLIRHLQVSNQRIQTCAIALLN 238 (713)
T ss_pred eeecccHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHhCC-hHHHHHHHh--cCcHHHHHHHHHhcchHHHHHHHHHHH
Confidence 0011223455555555332 235667778999999987643 445555655 777999999999999999999999888
Q ss_pred HHh
Q 021242 293 ILV 295 (315)
Q Consensus 293 ~l~ 295 (315)
.+-
T Consensus 239 al~ 241 (713)
T KOG2999|consen 239 ALF 241 (713)
T ss_pred HHH
Confidence 763
No 149
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.38 E-value=4.8 Score=42.16 Aligned_cols=252 Identities=15% Similarity=0.142 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc----c-hhhhhhcCchHHHH
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS----R-DSLMSTRGLLDAIS 94 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~----~-~~~i~~~~~i~~L~ 94 (315)
.+.+.+|+..|..++..-. ....-..++|-++.++.+++.++|..|+.+|..+-..- + +..+..+..+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 4789999999999985432 23334678999999999999999999999986654332 2 23344667888888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcC------------------CCch-hhh--hhccc------cHHHHHH-Hhhcc
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVV------------------DSYR-PII--GAKRD------IIHSLIE-IIKTR 146 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~------------------~~~~-~~i--~~~~g------~i~~Lv~-ll~~~ 146 (315)
.++.+. ...-++..-|..|..||.. +.+. ... ....+ .+...+. ++.
T Consensus 514 ~l~~d~---~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-- 588 (1431)
T KOG1240|consen 514 HLLNDS---SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-- 588 (1431)
T ss_pred hhhccC---ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc--
Confidence 888751 1222333333333333311 1111 000 00001 0222222 222
Q ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHhh----CCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHH
Q 021242 147 NSPLRSVKDALKALFGIALYPLNRYQVIAL----GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIG 222 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~----g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~ 222 (315)
..++-++..-+..|.-||. .+.+. =.++.|+.+|. +.+..++-.-...+.-+|..- |.+. ++..-+|
T Consensus 589 d~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLN-DkDw~LR~aFfdsI~gvsi~V-G~rs-~seyllP 659 (1431)
T KOG1240|consen 589 DSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLN-DKDWRLRGAFFDSIVGVSIFV-GWRS-VSEYLLP 659 (1431)
T ss_pred CCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhc-CccHHHHHHHHhhccceEEEE-eeee-HHHHHHH
Confidence 1223333333344555443 22221 22555666664 333333322222222222110 0000 1223356
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 223 VLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 223 ~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
-|.+-|.++ .+.+-..|+++|.-|++.+- -.+..+.+ .++-...++-.++.=+|..+..++....+
T Consensus 660 Ll~Q~ltD~---EE~Viv~aL~~ls~Lik~~l-l~K~~v~~----i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 660 LLQQGLTDG---EEAVIVSALGSLSILIKLGL-LRKPAVKD----ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHhccCc---chhhHHHHHHHHHHHHHhcc-cchHHHHH----HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 666677665 77888899999999987542 11223322 55566677778888899988886655443
No 150
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=1.4 Score=43.90 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=97.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccc
Q 021242 55 EILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRD 134 (315)
Q Consensus 55 ~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g 134 (315)
.+|.|.++.+..+++.+.+.+|-..+... .+++|+++|++ +.+++......|.-++.-. .+
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~~~~~-----i~kaLvrLLrs-----~~~vqyvvL~nIa~~s~~~---------~~ 354 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKNQVTK-----IAKALVRLLRS-----NREVQYVVLQNIATISIKR---------PT 354 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHHHHHH-----HHHHHHHHHhc-----CCcchhhhHHHHHHHHhcc---------hh
Confidence 34456778899999999999985554333 37889999985 3455554444444433211 12
Q ss_pred cHHHHH-HHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 135 IIHSLI-EIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 135 ~i~~Lv-~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
++.+-+ ++.-.+.+...++..=+..|.+|+. ..|...+ ++.+...+. +++..+...+..+|..++.. ..
T Consensus 355 lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~-esni~~I-----LrE~q~YI~-s~d~~faa~aV~AiGrCA~~---~~ 424 (968)
T KOG1060|consen 355 LFEPHLKSFFVRSSDPTQVKILKLEILSNLAN-ESNISEI-----LRELQTYIK-SSDRSFAAAAVKAIGRCASR---IG 424 (968)
T ss_pred hhhhhhhceEeecCCHHHHHHHHHHHHHHHhh-hccHHHH-----HHHHHHHHh-cCchhHHHHHHHHHHHHHHh---hC
Confidence 222222 2222113344555566677777764 3344443 345666665 34445666666666665442 11
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
. +...++..|+.++++. +..+-..++..+..|-...
T Consensus 425 s-v~~tCL~gLv~Llssh---de~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 425 S-VTDTCLNGLVQLLSSH---DELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred c-hhhHHHHHHHHHHhcc---cchhHHHHHHHHHHHHhhC
Confidence 1 2234678899999976 6677777777778776543
No 151
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.07 E-value=4.4 Score=36.54 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhhh-ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC---CCcHHHHHhhCCc
Q 021242 104 TSSAAVQSSAATLHSLLVVDSYRPIIGA-KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY---PLNRYQVIALGGV 179 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~---~~~~~~i~~~g~v 179 (315)
.+...|+.+...+.++.........+.. ...+++.+.+.++ .+..+-+.-|++++.-++.. .+....++ ....
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lk--kg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLK--KGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 3568888898888887754443333322 2345777788887 45555556677877777764 23444444 4678
Q ss_pred HHHHHHHhcCCCc--chHHHHH---HHHHHHhcC-hhhHHHHHhcCCHHHHHH--HhhcCC-------CCChhHHHHHHH
Q 021242 180 QPLFSLVVNGGRA--GIVEDAS---AVIAQIAGC-EESVDEFKKCCGIGVLVD--LLDLGT-------GSGHRVKENAVS 244 (315)
Q Consensus 180 ~~L~~lL~~~~~~--~~~~~a~---~~L~~L~~~-~~~~~~i~~~~~i~~Lv~--ll~~~~-------~~~~~~~~~a~~ 244 (315)
|.|.+.+. ++.. ..+..++ +++..++.. ++......+ .+..++. ..+.+. ..++.+.-.|+.
T Consensus 132 ~~L~~~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 132 PVLKRILT-DSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 88888886 3333 3334444 444444332 222221111 1221111 222110 012344444444
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+-.-|...-++....... ...++.|..+|++++..||..|...+..+-+.
T Consensus 209 aW~lLlt~~~~~~~~~~~---~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLL---EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHhcCCHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 433333322222222333 45799999999999999999999988877553
No 152
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.97 E-value=3.1 Score=42.00 Aligned_cols=265 Identities=14% Similarity=0.091 Sum_probs=148.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhcc-CchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKH-DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
++.....++....+.+.+.......++.. +...+..+...-++|.+-.+..+.+..++...+.....++---++.-. -
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t-i 435 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT-I 435 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC-c
Confidence 45556666666666776666666666532 223456666667788888888777777777666665555422221100 1
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
....|.++..+++ ..++++.+..+.+..+-...+ ....... ...+|.++.+-. .....++....+.+..++.
T Consensus 436 ~~llp~~~~~l~d----e~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~--d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 436 SELLPLLIGNLKD----EDPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAE--DLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred cccChhhhhhcch----hhHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhcc--chhHHHHHHHHHHHHHHHH
Confidence 2246666667776 677888887777765554332 2233333 244788888876 3356777777888887776
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc---ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG---CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~---~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
... ..+...-..+.+..-+. +...++++.|...+..++. ..+.+.. -++.++.+..++ +...+...
T Consensus 509 q~~--~~~~~~~~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~-----~i~k~L~~~~q~---~y~~R~t~ 577 (759)
T KOG0211|consen 509 QLG--VEFFDEKLAELLRTWLP-DHVYSIREAAARNLPALVETFGSEWARLE-----EIPKLLAMDLQD---NYLVRMTT 577 (759)
T ss_pred hhh--hHHhhHHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhCcchhHHH-----hhHHHHHHhcCc---ccchhhHH
Confidence 432 12221111111122221 1123566666666665543 1222222 256666666543 34444443
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
...+.-++.-.+ .++.. ...+|.+..+..+..+.||-++++.|..+...
T Consensus 578 l~si~~la~v~g----~ei~~--~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 578 LFSIHELAEVLG----QEITC--EDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHHHHHhc----cHHHH--HHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 333333332111 23443 45778888888888999999999988777644
No 153
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.81 E-value=0.12 Score=39.35 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=55.9
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
..++..|+++|..+ .++.+...|+.-|..++. .|..|..+-+.|+=..+++++. +++++++..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s-~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKS-DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SH-HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccC-CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 35688999999642 467788889999999998 5666666666788888899995 6899999999988877643
No 154
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.64 E-value=0.34 Score=48.35 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=77.5
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
-.++.+...|+++++.+|.-|++++..+-. ++ .-..+++++.+++.+.++-+|..|+-++.++-.-+. ....
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~ 163 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYH 163 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhh
Confidence 356778888899999999999988887732 22 223458899999999999999999999988754333 3334
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
+.|.+..+..++.+ .+|.+..+|..+|..+-
T Consensus 164 ~~g~~~~l~~l~~D----~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 164 ELGLIDILKELVAD----SDPIVIANALASLAEID 194 (757)
T ss_pred cccHHHHHHHHhhC----CCchHHHHHHHHHHHhc
Confidence 66777788888876 67788878877777654
No 155
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.45 E-value=10 Score=38.68 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccchhh-hhhcCchHHHH
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRDSL-MSTRGLLDAIS 94 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~~~-i~~~~~i~~L~ 94 (315)
+..|..-..+.+++..++.....+...+.. .+...+..+.- ..+-++-.|+.++.-.+ +...+ -..++.++-|+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHH
Confidence 345666668888888777654433332221 12333444433 23446666777775555 11111 23667788888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVI 174 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 174 (315)
++... .+.++...-..+|+.....+.......++ -+.|.++.++.+..+||.+...+--++..|++..++...+
T Consensus 537 qlas~----~s~evl~llmE~Ls~vv~~dpef~as~~s-kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m- 610 (1005)
T KOG2274|consen 537 QLASK----SSDEVLVLLMEALSSVVKLDPEFAASMES-KICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM- 610 (1005)
T ss_pred HHccc----ccHHHHHHHHHHHHHHhccChhhhhhhhc-chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-
Confidence 88875 45677777788888877655444433442 5577777777655678888888888888888744444443
Q ss_pred hhCCcHHHHHHHhcCC---CcchHHHHHHHHHHHhcC-h-hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 021242 175 ALGGVQPLFSLVVNGG---RAGIVEDASAVIAQIAGC-E-ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNL 249 (315)
Q Consensus 175 ~~g~v~~L~~lL~~~~---~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l 249 (315)
..-.+|.++..|.... ..+.+..++.+|..+-+. + .--+.+. .-+.|.+.+..-+. ++.....++-.+|..+
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHs--dD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHS--DDHETLQNATECLRAL 687 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeec--CChHHHHhHHHHHHHH
Confidence 3567999999996422 245677778888755442 2 2223332 23568888866543 2566666878888877
Q ss_pred hcc
Q 021242 250 VNF 252 (315)
Q Consensus 250 ~~~ 252 (315)
-..
T Consensus 688 Is~ 690 (1005)
T KOG2274|consen 688 ISV 690 (1005)
T ss_pred Hhc
Confidence 643
No 156
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.39 E-value=10 Score=38.67 Aligned_cols=251 Identities=13% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHhCCCHHHHHHHHcCC-----CHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHh----cCCCCCCHHHHHHH
Q 021242 43 MISEAGSIPYLAEILYSS-----SHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLR----HHSTSTSSAAVQSS 112 (315)
Q Consensus 43 ~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~----~~~~~~~~~~~~~a 112 (315)
.+.+.|++..|++++.+. ........+.+|..++.-.. ++.+.+.++++.|+..+. .+.....+++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 456789999999999752 34566667777777776654 455567999999998885 21101124555555
Q ss_pred HHHHHHhhcCCC---ch---h---hhh---hccccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccCCCcHHHHHhhCC
Q 021242 113 AATLHSLLVVDS---YR---P---IIG---AKRDIIHSLIEIIKTR--NSPLRSVKDALKALFGIALYPLNRYQVIALGG 178 (315)
Q Consensus 113 ~~~L~~Ls~~~~---~~---~---~i~---~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~ 178 (315)
..++..|..... .. . ..+ +....+..|++.+.++ ..++.+....++.|-+|+...+.+...+-.-
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 555555542111 11 1 110 0112366777766643 2357788889999999998776665443111
Q ss_pred cHHHHHHHhcCCC-cchHHHHHHHHHHHh----cC---hhhHHHHHhcCCHHHHHHHhhcCCC-----CChh--------
Q 021242 179 VQPLFSLVVNGGR-AGIVEDASAVIAQIA----GC---EESVDEFKKCCGIGVLVDLLDLGTG-----SGHR-------- 237 (315)
Q Consensus 179 v~~L~~lL~~~~~-~~~~~~a~~~L~~L~----~~---~~~~~~i~~~~~i~~Lv~ll~~~~~-----~~~~-------- 237 (315)
..+.+++=.-+.. .+--...+..++.++ .+ ..-|+.+++.|.+...+++|....+ .+++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 1222222110100 000011233333333 22 2457788888888888888865422 1222
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHHHHhhCC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~~l~~~~ 298 (315)
.-..++.+|.-+|.... ..+.++. .++++.+-.|=+.. +..+=.-|-.+|..+.+..
T Consensus 351 sLp~iL~lL~GLa~gh~--~tQ~~~~--~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHE--PTQLLIA--EQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCH--HHHHHHH--hhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 23458899999987532 3355565 67886666665543 5677777888888887643
No 157
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.23 E-value=1.8 Score=45.07 Aligned_cols=231 Identities=15% Similarity=0.117 Sum_probs=128.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhcc---CchhhHHHHhCCCHHHHHHHHcCCCH-HHHHHHHHHHHhcCcc---
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKH---DAEIRPMISEAGSIPYLAEILYSSSH-AFQENAAATLLNLSIT--- 78 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~la~~--- 78 (315)
+-+|..|.++..+.+++|..|+.+|..+... -+..-..+.-.-..|.|-.|+.+.+. .++.+=+..|..||..
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 3467889999999999999999999987532 22233344555668888888876332 2332222222222111
Q ss_pred ---------------cc-hh-hh-h--h------cCchHHH-HHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhh
Q 021242 79 ---------------SR-DS-LM-S--T------RGLLDAI-SHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIG 130 (315)
Q Consensus 79 ---------------~~-~~-~i-~--~------~~~i~~L-~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~ 130 (315)
+. ++ .. . + ...++.+ ..+|.+ +.+-++..-...|..|+. +...+
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd----~~~~Vkr~Lle~i~~LC~FFGk~k---- 613 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD----SPPIVKRALLESIIPLCVFFGKEK---- 613 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHhhhcc----
Confidence 10 10 00 0 0 0123333 233333 233444444444555442 22111
Q ss_pred hccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh
Q 021242 131 AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE 210 (315)
Q Consensus 131 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~ 210 (315)
...-+++-|+..|. +.|...+-.-...+..+|..-.. +-++.+.+|.|.+-|. ++++-+...|++.|+-|+...-
T Consensus 614 sND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~lt-D~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 614 SNDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLT-DGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred cccchHHHHHHHhc--CccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHhcc
Confidence 11123566666666 33555555555555555542111 1235567888888884 6777889999999999987654
Q ss_pred hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 211 SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 211 ~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
-++..+- ..+.-...+|-+. +.+++..++.++..+..+-
T Consensus 689 l~K~~v~-~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 689 LRKPAVK-DILQDVLPLLCHP---NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred cchHHHH-HHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhh
Confidence 4443321 2233444456554 7899999999999987643
No 158
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.16 E-value=7.9 Score=36.67 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=92.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC----chhhhhhccccHHHHHHHhhccCC-----ChHHHHHHHHHHHHh
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS----YRPIIGAKRDIIHSLIEIIKTRNS-----PLRSVKDALKALFGI 163 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~ll~~~~~-----~~~~~~~a~~aL~~L 163 (315)
+..+++. .+++-+..+...+..+.-.++ +|..+.+.-| ++.+=+++.+.++ +.-.+..++..|.-.
T Consensus 16 ~~~L~~~----k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 16 CLKLLKG----KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred HHHHhcc----cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4555553 344556666666667765443 4666666568 6888888875321 123345688889999
Q ss_pred ccCCCcH--HHHHhhCCcHHHHHHHhcCCCc------chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhh
Q 021242 164 ALYPLNR--YQVIALGGVQPLFSLVVNGGRA------GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 164 s~~~~~~--~~i~~~g~v~~L~~lL~~~~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
|+.|+.. ..|+ ..||.+++++....+. .+.+.+...|...++.+.|-..++..|+++.+-++-.
T Consensus 91 C~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 91 CRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 9988754 4665 6799999999643333 3678899999999999999999999999999987654
No 159
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.10 E-value=0.48 Score=40.08 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH---cCC--CHHHHHHHHHHHHhcCcccch---hhhhhcCchHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---YSS--SHAFQENAAATLLNLSITSRD---SLMSTRGLLDA 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~~~--~~~~~~~a~~~L~~la~~~~~---~~i~~~~~i~~ 92 (315)
.-...|+..|.-++.+ |+.|..+.++.+=--+-++| +++ .+-++..++.++..+..++.. +.....+.+|.
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 4456778888888865 89999999887533334444 332 234778899999999888753 33457889999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
+++++.. +++-.+..++.++..+-.++.+-.-+.+. ..++..++.-+-+ .++....+.++++-..||.
T Consensus 194 cLrIme~----gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs-~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 194 CLRIMEL----GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS-LGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHh----hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHheeecC
Confidence 9999997 56666777777777777777653333221 1223344443332 4667788889999889888
Q ss_pred CCCcHHHH
Q 021242 166 YPLNRYQV 173 (315)
Q Consensus 166 ~~~~~~~i 173 (315)
+|+.|..+
T Consensus 269 ~p~aR~lL 276 (315)
T COG5209 269 KPHARALL 276 (315)
T ss_pred CHhHHHHH
Confidence 88777654
No 160
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=8.7 Score=38.38 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~ 98 (315)
++..|..-++.|+..+..++. .+...|..+..+|.+.++.+...|+..|..++.++.--.. +...+++++.
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~-----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~----Aa~~~i~l~~ 289 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPA-----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA----AASTYIDLLV 289 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHH-----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH----HHHHHHHHHH
Confidence 446666666666666655444 2234466777777777777776666666666544331111 2333444443
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 99 HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.. ++..++.....-|..+. ..++..+ + |++--.+.+|.+ .+.+++..++.....|+.+
T Consensus 290 ke---sdnnvklIvldrl~~l~--~~~~~il-~--~l~mDvLrvLss--~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 290 KE---SDNNVKLIVLDRLSELK--ALHEKIL-Q--GLIMDVLRVLSS--PDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred hc---cCcchhhhhHHHHHHHh--hhhHHHH-H--HHHHHHHHHcCc--ccccHHHHHHHHHHhhhhh
Confidence 21 11122222222222222 1222222 2 446666677773 4777877777777776654
No 161
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=6.3 Score=40.99 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=143.4
Q ss_pred HHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCC--
Q 021242 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTS-- 103 (315)
Q Consensus 26 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~-- 103 (315)
+-..|..+.+.+.+|.+.+.++.++..+++++-+. +-+---++++..|-..+.+++ .+..+-.++..|+++-..
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkqv--hhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQV--HHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcccc--cHHHHHHHHHHHHhcceecc
Confidence 35667788888899999999988888888888432 223333344433333222211 233466777888762110
Q ss_pred -C-----CHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc--------CCChHHHHHHHHHHH-----Hh
Q 021242 104 -T-----SSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR--------NSPLRSVKDALKALF-----GI 163 (315)
Q Consensus 104 -~-----~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~--------~~~~~~~~~a~~aL~-----~L 163 (315)
+ ..+......+++|...+ +...+..+++.+| +..|...|... .+|..+-..-...|. .+
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatG-FslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATG-FSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhcccc-HHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 0 12344567788888875 5567888999888 56666555321 112111111222222 22
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCC----------------------Ccc--hHHH-HHHHHHHHh----------c-
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGG----------------------RAG--IVED-ASAVIAQIA----------G- 207 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~----------------------~~~--~~~~-a~~~L~~L~----------~- 207 (315)
|.++.|+.++-..=....+..+|+..+ -++ ..|. ||..+-.+- .
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 445566554321111112222221100 000 0111 222222211 1
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh---hCCHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ---NGSAKGK 284 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~---~~~~~~k 284 (315)
....++.|..+|++..++..+-.. +++.+-.-...+..+++.+. .. ++... ..|.+..|+.+.. +++.-.-
T Consensus 897 fnpdk~~iynagavRvlirslLln---ypK~qlefl~lleSlaRasp-fn-aellt-S~gcvellleIiypflsgsspfL 970 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLN---YPKLQLEFLNLLESLARASP-FN-AELLT-SAGCVELLLEIIYPFLSGSSPFL 970 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhh---ChHHHHHHHHHHHHHhhcCC-Cc-hhhhh-cccHHHHHHHHhhhhhcCCchHh
Confidence 123466788888899999966643 78888888888888887554 33 34443 3788888887654 4555566
Q ss_pred HHHHHHHHHHhhCC
Q 021242 285 TKAVALLKILVDDG 298 (315)
Q Consensus 285 ~~A~~~L~~l~~~~ 298 (315)
-.|.+|...|-.++
T Consensus 971 shalkIvemLgayr 984 (2799)
T KOG1788|consen 971 SHALKIVEMLGAYR 984 (2799)
T ss_pred hccHHHHHHHhhcc
Confidence 66777766665543
No 162
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.93 E-value=0.46 Score=40.20 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCC---HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHH
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCCG---IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGI 272 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~~---i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L 272 (315)
-.++.+|..+++.|+.+..|.++.. +-..+...... +..+..+--+.+++..+.+.+++.+...+.. ..++|.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~-~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt--TeivPLc 194 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN-SKFEYLRLTSLGVIGALVKNDSQYVIKFLLT--TEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC-CccceeeehHHHHHHHHHhCCCHHHHHHHHh--hhHHHHH
Confidence 3588888999999999999998774 33333333321 2356678889999999999877666666666 7899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 273 ADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 273 ~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+.+.+++.-|.-|..+++.+-.
T Consensus 195 LrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999998887643
No 163
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.88 E-value=0.38 Score=41.12 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhcChhhHHHHHhcCC-------HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHcc
Q 021242 194 IVEDASAVIAQIAGCEESVDEFKKCCG-------IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAM 266 (315)
Q Consensus 194 ~~~~a~~~L~~L~~~~~~~~~i~~~~~-------i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~ 266 (315)
-+..|+.+|+.|+..+.|..-+...+- +..|++++... .+...+|.|+.+|.++|..+. ..+..+.. +.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~--e~~v~REfAvvlL~~La~~~~-~~~r~iA~-q~ 215 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR--EDQVCREFAVVLLSNLAQGDE-AAARAIAM-QK 215 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHhcccH-HHHHHHHH-hh
Confidence 367899999999998888888877663 34445555443 478899999999999997543 34444443 48
Q ss_pred CcHHHHHHHHhhCCHHH
Q 021242 267 QVADGIADVAQNGSAKG 283 (315)
Q Consensus 267 g~~~~L~~ll~~~~~~~ 283 (315)
+.+..|+.+++..+...
T Consensus 216 ~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 216 PCISHLIAFIEDAEQNA 232 (257)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 99999999999864433
No 164
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.76 E-value=5.6 Score=36.93 Aligned_cols=193 Identities=11% Similarity=0.118 Sum_probs=112.3
Q ss_pred HHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHH--HHhcCCC
Q 021242 25 EALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISH--VLRHHST 102 (315)
Q Consensus 25 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~--lL~~~~~ 102 (315)
.|+..|-.+....+..-..+.+.|++..+++.++.+....++. -.+-..+... ..+.....+. .+..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~i~~--- 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGI----PPEYKESSVDGYSISY--- 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCC----CCCcccccccccccCH---
Confidence 4677777777666667788899999999999997543222221 0011111000 0000000000 0000
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCCc----hhhhhhccccHHHHHHHhhccC-CChHHHHHHHHHHHHhccCCCcHH-HHHh
Q 021242 103 STSSAAVQSSAATLHSLLV-VDSY----RPIIGAKRDIIHSLIEIIKTRN-SPLRSVKDALKALFGIALYPLNRY-QVIA 175 (315)
Q Consensus 103 ~~~~~~~~~a~~~L~~Ls~-~~~~----~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~~a~~aL~~Ls~~~~~~~-~i~~ 175 (315)
......+....++..+.. .... |..+- ++.+...|..+++.+. -.+.+...|+..+..+-.++.... .+.+
T Consensus 72 -~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D-~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 72 -QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLID-SSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred -HHHHHHHHHHHHHHHHhccCCCcccccccccc-hhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 001122223333333333 2222 33332 2465667777887421 135677788888888877655554 5567
Q ss_pred hCCcHHHHHHHh-cC--CCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc
Q 021242 176 LGGVQPLFSLVV-NG--GRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 176 ~g~v~~L~~lL~-~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~ 230 (315)
+|.++.+++.+. .. ++.++....-.++.-||-+..|.+.+.+.+.++.+++++.+
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 899999999996 32 23344444556777888999999999998889999998874
No 165
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=5.2 Score=39.87 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~ 77 (315)
..|+++++-+|-..++.|+.+- .++ .=...+|.+...|.+.+.=+|++|.-+++.+-.
T Consensus 106 kDLQHPNEyiRG~TLRFLckLk--E~E-----Llepl~p~IracleHrhsYVRrNAilaifsIyk 163 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLK--EPE-----LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYK 163 (948)
T ss_pred hhccCchHhhcchhhhhhhhcC--cHH-----HhhhhHHHHHHHHhCcchhhhhhhheeehhHHh
Confidence 4567777666666555555552 122 113456777777777766677777766655543
No 166
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.71 E-value=1.5 Score=45.56 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=104.3
Q ss_pred cHHHHHHHhhcc--CCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hh
Q 021242 135 IIHSLIEIIKTR--NSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EE 210 (315)
Q Consensus 135 ~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~ 210 (315)
+.|.++.+.+.+ .++|.++..|.-+|+.+.. +.+-+ ...+|.|+..+..+|++.++-++.-.++.|+.. |.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 456666666532 3468888888888887764 32222 345788999997667788888888888888764 32
Q ss_pred hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 211 SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 211 ~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
..+. .-+.|...|.+. +..+|+.|+.+|.+|-.. .|++ --|.++....++.+++++++..|...
T Consensus 995 lie~-----~T~~Ly~rL~D~---~~~vRkta~lvlshLILn-------dmiK-VKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDE---SPSVRKTALLVLSHLILN-------DMIK-VKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred ccch-----hhHHHHHHhcCc---cHHHHHHHHHHHHHHHHh-------hhhH-hcccHHHHHHHhcCCcHHHHHHHHHH
Confidence 2221 236677777764 899999999999998642 3555 27999999999999999999999987
Q ss_pred HHHHhhCCC
Q 021242 291 LKILVDDGN 299 (315)
Q Consensus 291 L~~l~~~~~ 299 (315)
.+.|+.-+|
T Consensus 1059 F~Els~k~n 1067 (1251)
T KOG0414|consen 1059 FKELSSKGN 1067 (1251)
T ss_pred HHHhhhccc
Confidence 777766543
No 167
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.63 E-value=1.3 Score=36.33 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=74.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcC---------CCHHHHHHHHHHHHhc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYS---------SSHAFQENAAATLLNL 75 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~l 75 (315)
......+..|.+..... ..+..|.......+. --+.+.+.||+..|++.|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 35566788887765332 555555544444333 35678889999999999953 3456788899999888
Q ss_pred Ccccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 76 SITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 76 a~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
..+.. ..++..++++..|+..|.+ .+..++..+..+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s----~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDS----PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--T----TSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCC----CCHHHHHHHHHHHHHHH
Confidence 77653 4456688999999999987 68899998988887764
No 168
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.33 E-value=0.36 Score=38.87 Aligned_cols=147 Identities=19% Similarity=0.165 Sum_probs=85.9
Q ss_pred hHHHHHHHhCC--CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc---ch
Q 021242 7 TVRSLVTKLGS--VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS---RD 81 (315)
Q Consensus 7 ~i~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~---~~ 81 (315)
.+..++..|.. .++++|..++..+..+- +..++...+ -.-+-+-.++...+.+....++.++..+--.. ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 34456666654 45689999999999884 233333322 11112222223222234445555554444333 36
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH-HHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR-SVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~-~~~~a~~aL 160 (315)
.++...|..+.++.+.... ..+......++.+|..=+.....|..+.+ .| ++.|-++.+. ..+.. ++..|+-.|
T Consensus 80 ~l~~~eg~~~~l~~~~~~~--~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~-~~~L~~~~~~-~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRK--SKDRKVQKAALELLSAACIDKSCRTFISK-NY-VSWLKELYKN-SKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-C--TS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HC-HHHHHHHTTT-CC-HH-CHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHccHHHHHHHHH-HH-HHHHHHHHcc-ccchHHHHHHHHHHH
Confidence 7777899999999999821 15666677777777665555566666665 57 8999999963 23344 566666655
Q ss_pred HH
Q 021242 161 FG 162 (315)
Q Consensus 161 ~~ 162 (315)
..
T Consensus 155 ~K 156 (157)
T PF11701_consen 155 CK 156 (157)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=14 Score=38.29 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.++|+.|+..|++.|..++--|++-+..++...+..+. ..++...++++.. .+++..-..++-+|..|+...--.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La--d~vi~svid~~~p---~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA--DQVIGSVIDLFNP---AEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH--HHHHHHHHHhcCc---CCchhHHHHHHHHHHHHHhcCCcc
Confidence 36788888888888888998999999888876654432 2367777775553 234555668888999988643322
Q ss_pred hhhhhccccHHHHHHHhhcc------CCChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHH
Q 021242 127 PIIGAKRDIIHSLIEIIKTR------NSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDA 198 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~------~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a 198 (315)
.... ..++|.+++-+... .....++..|+=..|.+++. +..-+.+++.=+--.|...+- |++...+..|
T Consensus 415 ps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-DrevncRRAA 491 (1133)
T KOG1943|consen 415 PSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVNCRRAA 491 (1133)
T ss_pred hHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-CchhhHhHHH
Confidence 2111 24466666555321 12235677777777777763 222223332211122222222 3455666666
Q ss_pred HHHHHHHhcC----hhhH----------------------HHHHhcCC-HHHHHHHhhcCCC--CChhHHHHHHHHHHHH
Q 021242 199 SAVIAQIAGC----EESV----------------------DEFKKCCG-IGVLVDLLDLGTG--SGHRVKENAVSALLNL 249 (315)
Q Consensus 199 ~~~L~~L~~~----~~~~----------------------~~i~~~~~-i~~Lv~ll~~~~~--~~~~~~~~a~~~L~~l 249 (315)
.+++...-+. |+|. ..+.+-.+ ...++..+-...- =+..+++.+.++|.+|
T Consensus 492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 6666653221 1111 11222222 3444443322111 1568899999999998
Q ss_pred hccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 250 VNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 250 ~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
+... .+-.. .+.+++|++...+.++..+.-+..
T Consensus 572 s~~~-----pk~~a--~~~L~~lld~~ls~~~~~r~g~~l 604 (1133)
T KOG1943|consen 572 SLTE-----PKYLA--DYVLPPLLDSTLSKDASMRHGVFL 604 (1133)
T ss_pred HHhh-----HHhhc--ccchhhhhhhhcCCChHHhhhhHH
Confidence 7532 23343 688999998888877766654443
No 170
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.24 E-value=0.68 Score=38.11 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=72.9
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcC--------CCcchHHHHHHHHHHH
Q 021242 136 IHSLIEIIKTRNSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNG--------GRAGIVEDASAVIAQI 205 (315)
Q Consensus 136 i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~--------~~~~~~~~a~~~L~~L 205 (315)
...+++.+.. ..... ..+..|.-.-++ .+....+++.||+..|+.+|... .+......++..|+.+
T Consensus 68 p~~~i~~L~~--~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 68 PEWYIKKLKS--RPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHTT--T--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 5667777763 22221 333333322222 24566788899999999988531 1224556688999999
Q ss_pred hcChhhHHHHHhcC-CHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 206 AGCEESVDEFKKCC-GIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 206 ~~~~~~~~~i~~~~-~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
...+.|+..+.+.. ++..++..|.+. +..++..++.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence 99999999998865 589999988765 8899999999999987
No 171
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.18 E-value=4.1 Score=32.88 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=83.6
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
.+++.|+++++.. .+..++.+++++|..|-.-+.-+.+....+.- .....+.+.......+ ..... ...-+
T Consensus 10 ~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~~~~~~~~~~~l-~~~~~---~~~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSENSNDESTDISL-PMMGI---SPSSE 80 (160)
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccccccccchhhHH-hhccC---CCchH
Confidence 4577888888863 56899999999999987755555443322111 0000011111222111 11111 11234
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
++.-...+..|+++|++. .-..-...++.++..+.+..+..+...+-+ ++|.++..++++++..++.--.-|.
T Consensus 81 e~y~~vvi~~L~~iL~D~--sLs~~h~~vv~ai~~If~~l~~~cv~~L~~----viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDP--SLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ----VIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhcCcCchhHHHH----HhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444678899998864 233444467777777776544445555544 8999999999988877776544343
No 172
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.49 E-value=0.81 Score=36.80 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHc--CCCHHHHHHHHHHHHhcCcccchhhhhhcCchHH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILY--SSSHAFQENAAATLLNLSITSRDSLMSTRGLLDA 92 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~ 92 (315)
..++.+....++.++..+--..++.-..+. ..|.++.++.+.. +.+..++..++.+|..-|.+...+-.+...+++.
T Consensus 53 ~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~ 132 (157)
T PF11701_consen 53 DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSW 132 (157)
T ss_dssp CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHH
T ss_pred ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 444446777888888888755566655555 5899999999998 7888899999999977776665444346678999
Q ss_pred HHHHHhcCCCCCCHH-HHHHHHHHHHH
Q 021242 93 ISHVLRHHSTSTSSA-AVQSSAATLHS 118 (315)
Q Consensus 93 L~~lL~~~~~~~~~~-~~~~a~~~L~~ 118 (315)
|-..++. +.+.. ++..|+-.|..
T Consensus 133 L~~~~~~---~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 133 LKELYKN---SKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHTTT---CC-HH-CHHHHHHHHHH
T ss_pred HHHHHcc---ccchHHHHHHHHHHHhc
Confidence 9999975 14444 67777766654
No 173
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=5.9 Score=40.03 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHH
Q 021242 105 SSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184 (315)
Q Consensus 105 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~ 184 (315)
-+.++..+...|+++....+.+.++.. .+++......++ ++++-+-.+|.+.+..||. +.....+|-+.+
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lk--dedsyvyLnaI~gv~~Lce-------vy~e~il~dL~e 809 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLK--DEDSYVYLNAIRGVVSLCE-------VYPEDILPDLSE 809 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhc--ccCceeeHHHHHHHHHHHH-------hcchhhHHHHHH
Confidence 345677788888888876666666655 477888888888 5566677778876666663 234556676776
Q ss_pred HHhcCCCcc---hHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHH
Q 021242 185 LVVNGGRAG---IVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEE 260 (315)
Q Consensus 185 lL~~~~~~~---~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 260 (315)
.-.+..+.. .+-..=.++.++.. ..+-.....+ --+...++.++.. +...|..+++++.++|.-..-.....
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep---d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP---DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc---hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 443222111 11111122322221 1111111111 1134444444432 56778889999999987433222233
Q ss_pred HHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhhC
Q 021242 261 VKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 261 i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~~ 297 (315)
+.+ ++..++.+.+. +++-+|+.|+.++..+-.+
T Consensus 886 ~~e----v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 886 FHE----VLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHH----HHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 433 66777777775 6899999999988877553
No 174
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.05 E-value=8.4 Score=41.44 Aligned_cols=107 Identities=19% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcCh-hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCC
Q 021242 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCE-ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGG 254 (315)
Q Consensus 177 g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~ 254 (315)
-.||.|.++=. ||+..++ .|+.-+++- -.++ ....+.. .....-|+.-+.+. ..++||.+|.+|..|-.. .
T Consensus 998 kLIPrLyRY~y-DP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k---ewRVReasclAL~dLl~g-~ 1070 (1702)
T KOG0915|consen 998 KLIPRLYRYQY-DPDKKVQ-DAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK---EWRVREASCLALADLLQG-R 1070 (1702)
T ss_pred HhhHHHhhhcc-CCcHHHH-HHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch---hHHHHHHHHHHHHHHHcC-C
Confidence 34666666654 5666655 556666664 3332 2222222 12345566655544 789999999999999864 3
Q ss_pred HHHHHHHHHHccCcHHHHHH-HHh---hCCHHHHHHHHHHHHHHhh
Q 021242 255 ERAAEEVKEMAMQVADGIAD-VAQ---NGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 255 ~~~~~~i~~~~~g~~~~L~~-ll~---~~~~~~k~~A~~~L~~l~~ 296 (315)
+. .++.+ -+|.++. +.+ +=.+.||+.|.++.+-++.
T Consensus 1071 ~~--~~~~e----~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1071 PF--DQVKE----KLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred Ch--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 24433 4566663 333 3357788877776665543
No 175
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.70 E-value=5.8 Score=36.84 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-C---CCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHH
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-S---SSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAIS 94 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~---~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~ 94 (315)
+.+-..|+..+..+..++|-.-..+.++|.++.+++.+. . .+.++...--.+|..+|.+.. -+.+.+.+.++.++
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 578888999999999888888889999999999999998 4 356788888889999999975 56666889999999
Q ss_pred HHHhc
Q 021242 95 HVLRH 99 (315)
Q Consensus 95 ~lL~~ 99 (315)
+++.+
T Consensus 203 ~if~s 207 (379)
T PF06025_consen 203 EIFTS 207 (379)
T ss_pred HHhCC
Confidence 99975
No 176
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.64 E-value=1.3 Score=44.86 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD 123 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~ 123 (315)
..++|.|++.........+..=+.+|.+.-.+-+++++. -+...|.|++-|.- ++++++..+..++..+.- .+
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~----~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM----PDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC----CccchhhhHhhhhhHHHHhcc
Confidence 356899999988666666666777776665555544432 34467777777774 677888788888877664 33
Q ss_pred CchhhhhhccccHHHHHHHhhccCCC-hHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSP-LRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~-~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
.-...-. +-++|.++.+=++++.+ ..++..|+..|..|.. .|.+.-.-.+..++..+.+.|. |+..-+++.|..+
T Consensus 942 tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld-DkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD-DKKRLVRKEAVDT 1018 (1030)
T ss_pred ccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC-cHHHHHHHHHHHH
Confidence 3222222 35688888876653222 5678889999999998 6666555556778888999984 5555566666554
No 177
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.57 E-value=22 Score=36.35 Aligned_cols=180 Identities=11% Similarity=0.084 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHH
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMIS--EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAIS 94 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~ 94 (315)
..|-.+..|+.+++-+++.. .+. ..+++..|..+......++...-..+|...+.-+. .....++...|..+
T Consensus 503 ~~~~~ki~a~~~~~~~~~~~-----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i 577 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKVK-----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTI 577 (1005)
T ss_pred CCCchhHHHHHHHHhccCce-----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHH
Confidence 34567777777777777332 112 25677778888776677777777778866655543 33333555677777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccC--CChHHHHHHHHHHHHhccC-CCcHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRN--SPLRSVKDALKALFGIALY-PLNRY 171 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~aL~~Ls~~-~~~~~ 171 (315)
.++..- .++|.+...+-.++..|+....+...+.+ -+||.|++++..+. ........|+..|.-+.++ |.--.
T Consensus 578 ~lF~k~--s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 578 NLFLKY--SEDPQVASLAQDLFEELLQIAANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred HHHHHh--cCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 666421 25777777777777777765555444443 45999999998531 1134445555555544442 22223
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
...-.-+.|++.++..+..+......+-.+|+.+-
T Consensus 654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 33345678888888875556666677777777663
No 178
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.43 E-value=14 Score=33.68 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=107.3
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhc-cCchhhHHHHh--CCCHHHHHHHHcCC-----C--------HHHHHHHHH
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSK-HDAEIRPMISE--AGSIPYLAEILYSS-----S--------HAFQENAAA 70 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~--~g~i~~Lv~lL~~~-----~--------~~~~~~a~~ 70 (315)
+...+.+.|+++.+.....++..|..++. .+....+.+.. .=-.+.+-+++... . +++|.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 46778888898888899999999999998 55455555554 34466777777321 1 278888888
Q ss_pred HHHhcCcccc----hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hhcCCC----chhhhhhccccHHHHHH
Q 021242 71 TLLNLSITSR----DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS-LLVVDS----YRPIIGAKRDIIHSLIE 141 (315)
Q Consensus 71 ~L~~la~~~~----~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~-Ls~~~~----~~~~i~~~~g~i~~Lv~ 141 (315)
.+..+-...+ +.++.+.+.+..+++-|.. +++++......+|.. +...+. .|..+-. ..++..|+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~----D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~ 211 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK----DPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLAS 211 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccC----CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHH
Confidence 7766655432 3466677778888888886 677888888888884 443332 2444443 245888998
Q ss_pred HhhccCCCh----HHHHHHHHHHHHhccCCC
Q 021242 142 IIKTRNSPL----RSVKDALKALFGIALYPL 168 (315)
Q Consensus 142 ll~~~~~~~----~~~~~a~~aL~~Ls~~~~ 168 (315)
+... .++ .+...+-..|..+|.++.
T Consensus 212 Ly~~--~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSR--DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhcc--cCCcccchHHHHHHHHHHHHhcCCC
Confidence 7763 344 677888899999997654
No 179
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.26 E-value=19 Score=35.07 Aligned_cols=265 Identities=14% Similarity=0.077 Sum_probs=143.8
Q ss_pred CCCHHHHHHHHHHHHHHhc-cCchhhHHHHh--CCC--------HHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 17 SVSEQTRAEALAELRLLSK-HDAEIRPMISE--AGS--------IPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~--~g~--------i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.++++.|+.|.-+|.+-.. .++.-++...+ .|. =...++-|++..|.+-..|+..+..++.-+ .
T Consensus 52 ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E-----l 126 (858)
T COG5215 52 NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME-----L 126 (858)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----C
Confidence 4567889888888886543 33332232222 221 122355566777777777777777665322 2
Q ss_pred hcCchHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH-h
Q 021242 86 TRGLLDAISHVLRHHS-TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG-I 163 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~-L 163 (315)
-.+..|-|+..+...- -.+....+..+..++.+.+.......++..++.++-.++.--.+...+..++..|+.+|++ +
T Consensus 127 p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 127 PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 3445555555553211 0134457788999999988655545666555554555554333212345677889999988 2
Q ss_pred ccC------CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCCh
Q 021242 164 ALY------PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 164 s~~------~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~ 236 (315)
-.- +.+|..+ +....+.-+ .++.+++..+.+.|..+..- -..-+...+.--..-....+++. ++
T Consensus 207 ~fv~~nf~~E~erNy~-----mqvvceatq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~---nd 277 (858)
T COG5215 207 MFVQGNFCYEEERNYF-----MQVVCEATQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ---ND 277 (858)
T ss_pred HHHHHhhcchhhhchh-----heeeehhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ch
Confidence 211 1122221 112223332 35678888888888877542 22223333322223333355543 77
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHH--------------ccCcHHHHHHHHhhC--C-----HHHHHHHHHHHHHHh
Q 021242 237 RVKENAVSALLNLVNFGGERAAEEVKEM--------------AMQVADGIADVAQNG--S-----AKGKTKAVALLKILV 295 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~~~~~~i~~~--------------~~g~~~~L~~ll~~~--~-----~~~k~~A~~~L~~l~ 295 (315)
++.-.++..-.-+|...-+ ..-+.-.. -.+++|.|+.++... + =.....|...|+.+.
T Consensus 278 ~va~qavEfWsticeEeid-~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfa 356 (858)
T COG5215 278 EVAIQAVEFWSTICEEEID-GEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFA 356 (858)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHH
Confidence 8887887765567653321 11111110 034789999998861 2 245566666777765
Q ss_pred h
Q 021242 296 D 296 (315)
Q Consensus 296 ~ 296 (315)
.
T Consensus 357 q 357 (858)
T COG5215 357 Q 357 (858)
T ss_pred H
Confidence 4
No 180
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.00 E-value=4.3 Score=39.59 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=97.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.+-+|.|...|++..+.++...+..+..++..++++ .-..+ ..+==-|+++|++.+.+++++|...+.-++. .
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey-i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~-----a 760 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY-IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR-----A 760 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh-----h
Confidence 345678888888888888888888888888777652 11222 2333458899999999999999998876652 2
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+.-.+.+..|+.=|+. + +-+...+.++ .++...+.+-.+ .++|.|..=-. +....++...+++++.+
T Consensus 761 iGPqdvL~~LlnnLkv----q--eRq~Rvctsv-aI~iVae~cgpf----sVlP~lm~dY~--TPe~nVQnGvLkam~fm 827 (975)
T COG5181 761 IGPQDVLDILLNNLKV----Q--ERQQRVCTSV-AISIVAEYCGPF----SVLPTLMSDYE--TPEANVQNGVLKAMCFM 827 (975)
T ss_pred cCHHHHHHHHHhcchH----H--HHHhhhhhhh-hhhhhHhhcCch----hhHHHHHhccc--CchhHHHHhHHHHHHHH
Confidence 2122233333333332 1 2222222222 122222222211 12444444333 22445666677776655
Q ss_pred ccCC--CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 164 ALYP--LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 164 s~~~--~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
-..- ..+..+ .-..|.|-+.|. +.++.-+..|+.++..|+-
T Consensus 828 Feyig~~s~dYv--y~itPlleDAlt-DrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 828 FEYIGQASLDYV--YSITPLLEDALT-DRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHH--HHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc
Confidence 4321 222222 234455555553 3444455667777776654
No 181
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.99 E-value=12 Score=35.56 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhccCchhhH-HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc--cc--h-h-hhh--hcCchHH
Q 021242 22 TRAEALAELRLLSKHDAEIRP-MISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT--SR--D-S-LMS--TRGLLDA 92 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~--~~--~-~-~i~--~~~~i~~ 92 (315)
++.+|.+++..++-+ +..|. ...-.......+..|.+..-..|+.+++++.|++.- .. + + .-. ..-.+..
T Consensus 407 v~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 555666666666665 34443 223355566666666665566899999999998643 21 1 1 100 1112444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC------chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS------YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+++.-.. ....+..++.++.++|.|+...-+ ++..+ + +.+..+....-. .+..+++.+|+-++.||-.+
T Consensus 486 ~~~~A~~-~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~--~~~~~l~~~v~~-~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 486 MLRSAIE-ASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-E--ESIQALISTVLT-EAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHH-hhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-H--HHHHhcccceec-ccccccchHHHHHHHHhhcC
Confidence 4443321 011345677889999999985321 12222 2 224444443222 35678999999999999998
Q ss_pred CCcHHHHHh--hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHH
Q 021242 167 PLNRYQVIA--LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 167 ~~~~~~i~~--~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
+..+.+-.+ .-+.+.|..++.+..+..++..|.++|..-... ....+.= -...++..|... -+..
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r----e~~~d~~~Lsw~~lv~aLi~s-------~~~v 629 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR----EQYGDQYALSWNALVTALQKS-------EDTI 629 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc----ccchhHHhHHHHHHHHHHHHH-------HHHH
Confidence 766443222 245667788887667888898999888865442 2221111 134555555421 1123
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG 279 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~ 279 (315)
+-++++.+.. ..+.+ ..++.++..++++.
T Consensus 630 ~f~eY~~~Ds----l~~q~----c~av~hll~la~Ss 658 (728)
T KOG4535|consen 630 DFLEYKYCDS----LRTQI----CQALIHLLSLASSS 658 (728)
T ss_pred HHHHHHHHHH----HHHHH----HHHHHHHHHHhhcc
Confidence 4456665532 33344 33666777777763
No 182
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=15 Score=37.39 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=105.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
.......+..+.++-+.+|-.|+..|+.+...- .-...+...+++...+++|++.|+=+--.|+..+--||. +
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------v 798 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------V 798 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------h
Confidence 334555666667777889999999999999653 445566679999999999999887665666664433331 1
Q ss_pred hhcCchHHHHH-HHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 85 STRGLLDAISH-VLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~~i~~L~~-lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.....+|.+.. +.... .-..++.+...-.++.++.. -.+-.. ...+-++....+.+++ .+...+..++..|.+
T Consensus 799 y~e~il~dL~e~Y~s~k-~k~~~d~~lkVGEai~k~~qa~Gel~~--~y~~~Li~tfl~gvre--pd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEK-KKLQTDYRLKVGEAILKVAQALGELVF--KYKAVLINTFLSGVRE--PDHEFRASSLANLGQ 873 (982)
T ss_pred cchhhHHHHHHHHHhcc-cCCCccceehHHHHHHHHHHHhccHHH--HHHHHHHHHHHHhcCC--chHHHHHhHHHHHHH
Confidence 34455666666 33210 00123444444466666553 222111 1111223333344442 244557778888888
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
||+-.+.+..=.-..++.-++.+...+++..++..|.-++..+-
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 88622111000112233334444443445566777777777653
No 183
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.92 E-value=1.5 Score=37.54 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCcccc----hhhhhhcCchHHHHHHHhcC--------CC---CCCHHHHHHHHHHHHHhhcCCCchh
Q 021242 63 AFQENAAATLLNLSITSR----DSLMSTRGLLDAISHVLRHH--------ST---STSSAAVQSSAATLHSLLVVDSYRP 127 (315)
Q Consensus 63 ~~~~~a~~~L~~la~~~~----~~~i~~~~~i~~L~~lL~~~--------~~---~~~~~~~~~a~~~L~~Ls~~~~~~~ 127 (315)
.+|++|.-+|.|++..-+ ..-+ ..-.++-|+...-.+ ++ .....-+..+..+|+.|+..+.|.+
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 477888888888876532 1111 111233333332111 10 0112346789999999999999988
Q ss_pred hhhhccc------cHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH--HHHHhhCCcHHHHHHHh
Q 021242 128 IIGAKRD------IIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR--YQVIALGGVQPLFSLVV 187 (315)
Q Consensus 128 ~i~~~~g------~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~--~~i~~~g~v~~L~~lL~ 187 (315)
.+..++. ++..|+.++.. ++++-.++-|+-.|.+|+..++.. ....+.++|..|+.++.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~-~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE 226 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGM-REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIE 226 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHH
Confidence 8876544 33445555544 467788889999999999966543 33456799999999996
No 184
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.86 E-value=0.79 Score=33.29 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
+......+..|.++.+.+|..|+..|+.+..... ...+-..+++..+...|+++|+=+--+|+..|..|+..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999987644 12222367788888888888887888888888887743
No 185
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.72 E-value=8.4 Score=37.50 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=76.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCc
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGL 89 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~ 89 (315)
.++..-+ +++..+.-|...|..+.++-|+ .+..+|..+++|..+.|..+|..|+..|..+|.++..-+ ...
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v---~kv 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV---SKV 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H---HHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH---hHH
Confidence 3444434 5678888899999998888777 344568899999999999999999999999998753211 113
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh-ccCCChHHHHHHHHHHH
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK-TRNSPLRSVKDALKALF 161 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~~a~~aL~ 161 (315)
.+.|.++|.+ +++.-....-.+|..|-..+. .+.+..|++-+. .+.++..+++.++..|.
T Consensus 98 aDvL~QlL~t----dd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ADVLVQLLQT----DDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhc----ccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 6778888886 343333344445555443222 122344444332 11246667777777664
No 186
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=32 Score=36.24 Aligned_cols=225 Identities=19% Similarity=0.139 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-C-CCchhhhhhccccHH
Q 021242 60 SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-V-DSYRPIIGAKRDIIH 137 (315)
Q Consensus 60 ~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~-~~~~~~i~~~~g~i~ 137 (315)
.+..+|..+-.+|-.++..+.-... ...-+..+...|.+.-.......+.....+|..|-. . .+....+.. . |+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~-~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~-I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGL-VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--L-IP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--H-HH
Confidence 4678999999999887766321111 111233333333210000233445556666666653 2 233444432 2 45
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHhcc----CCCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcChhhH
Q 021242 138 SLIEIIKTRNSPLRSVKDALKALFGIAL----YPLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 138 ~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~ 212 (315)
.++=.++ ..+...++.|..+|..|+. .++.-.. ....+..++..+... -.......+..++ .+...-...
T Consensus 742 EvIL~~K--e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Iv-ai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLK--EVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIV-AITHILQEF 816 (1176)
T ss_pred HHHHhcc--cccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHH-HHHHHHHHH
Confidence 4444445 4577888899999988883 1111000 111344444444311 0122222222222 221111111
Q ss_pred HHHHhcCCHHHHHH----HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVD----LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~----ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
..+.+.+.++.+++ +|..+ ++.+...|++.+..++...++.+...-+ .-.++.+..+.+...-.+|.+..
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~---sreI~kaAI~fikvlv~~~pe~~l~~~~---~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASN---SREIAKAAIGFIKVLVYKFPEECLSPHL---EELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHcCCHHHHhhhH---HHHHHHHHHHHHhhhHHHHHHHH
Confidence 22222233344444 44443 8899999999999998866543211111 34788888888888999999999
Q ss_pred HHHHHH-hhCCC
Q 021242 289 ALLKIL-VDDGN 299 (315)
Q Consensus 289 ~~L~~l-~~~~~ 299 (315)
.+|..| +.++.
T Consensus 891 ~LlekLirkfg~ 902 (1176)
T KOG1248|consen 891 LLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHhCH
Confidence 998887 44544
No 187
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.08 E-value=2.3 Score=33.53 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la 76 (315)
+..+..+-..|+++++.++..|+..|-.+.++- ..-...+.+.+.+..|+.++.. .++.++..++..+..-+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999873 4456788889999999999974 56789999999886554
No 188
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.99 E-value=3.6 Score=38.68 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch--------hhHHHHhC----CCHHHHHHHHcCCCHHHHHHHHHHHH
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE--------IRPMISEA----GSIPYLAEILYSSSHAFQENAAATLL 73 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--------~~~~i~~~----g~i~~Lv~lL~~~~~~~~~~a~~~L~ 73 (315)
..+..|+++|++ ++....++..+.-+..+.+. +-+.+.+. -.+|.|++..+..+.+.+..-+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 456788888887 57778888888888766332 22223222 34778888887777678888888888
Q ss_pred hcCcccchhhhh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC
Q 021242 74 NLSITSRDSLMS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123 (315)
Q Consensus 74 ~la~~~~~~~i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~ 123 (315)
.+-.+-++.++. -+..+|.|++-|.. ++.+++..+..+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~----~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSL----PDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHcC
Confidence 887776654432 24478888999975 67788999999999887655
No 189
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=6.8 Score=40.54 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=92.5
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
++++.|+..++ +.+..++..|++-+..+...-. .-.-..++...++++.--.+......+|-+|+.|+...--..
T Consensus 341 ~vie~Lls~l~--d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALS--DTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhcc--CCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 55777777777 5678899999999998887322 112234566677766421234566678889998876432222
Q ss_pred HHHhcCCHHHHHHHhhcCC-----CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHH-HHHh----hCCHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGT-----GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA-DVAQ----NGSAKG 283 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~-~ll~----~~~~~~ 283 (315)
...+ ..+|.+++.+.-.+ .....+++.||.++|.+++++++. .| .+++..|. .++. +.+-..
T Consensus 416 s~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l----~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DL----KPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred HHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hh----hHHHHHHHHHHHHHHhcCchhhH
Confidence 2211 23455555443211 124578999999999999987654 22 23444333 2222 235678
Q ss_pred HHHHHHHHHHHhh
Q 021242 284 KTKAVALLKILVD 296 (315)
Q Consensus 284 k~~A~~~L~~l~~ 296 (315)
|+.|..+++..-+
T Consensus 488 RRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 488 RRAASAALQENVG 500 (1133)
T ss_pred hHHHHHHHHHHhc
Confidence 8888888888765
No 190
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=31 Score=34.93 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=121.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh-hhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS-LMST 86 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~-~i~~ 86 (315)
-..|.++|.+.....+..|..-|..+-.++.+ -....|.+|+...+.+.+++.-.--.|...|...++- +.
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 35788999988777888888777665433333 1234788999999999999988888888888766543 22
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHH-HHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIH-SLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
-|..+-+-|++ +++.++..|.++|..+ |..+.. +++- .+-+... +.++-++..|+.|+-.|=+
T Consensus 109 --SIntfQk~L~D----pN~LiRasALRvlSsI------Rvp~Ia--PI~llAIk~~~~--D~s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 109 --SINTFQKALKD----PNQLIRASALRVLSSI------RVPMIA--PIMLLAIKKAVT--DPSPYVRKTAAHAIPKLYS 172 (968)
T ss_pred --eHHHHHhhhcC----CcHHHHHHHHHHHHhc------chhhHH--HHHHHHHHHHhc--CCcHHHHHHHHHhhHHHhc
Confidence 35566677776 6777776665555442 222211 2111 1112333 3467889999999988766
Q ss_pred -CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 166 -YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 166 -~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
+++.+.+++ ..+-.+| .+.++.+.-.|+.+...+| ++..+-+ ++-..++..++.+ .+.+-|-..+.
T Consensus 173 Ld~e~k~qL~-----e~I~~LL-aD~splVvgsAv~AF~evC--PerldLI--HknyrklC~ll~d---vdeWgQvvlI~ 239 (968)
T KOG1060|consen 173 LDPEQKDQLE-----EVIKKLL-ADRSPLVVGSAVMAFEEVC--PERLDLI--HKNYRKLCRLLPD---VDEWGQVVLIN 239 (968)
T ss_pred CChhhHHHHH-----HHHHHHh-cCCCCcchhHHHHHHHHhc--hhHHHHh--hHHHHHHHhhccc---hhhhhHHHHHH
Confidence 566666553 2333444 4556666666766666654 3322222 2234444444443 24444444444
Q ss_pred HHHHHh
Q 021242 245 ALLNLV 250 (315)
Q Consensus 245 ~L~~l~ 250 (315)
.|..-|
T Consensus 240 mL~RYA 245 (968)
T KOG1060|consen 240 MLTRYA 245 (968)
T ss_pred HHHHHH
Confidence 444433
No 191
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.97 E-value=21 Score=35.20 Aligned_cols=173 Identities=18% Similarity=0.090 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHH---hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMIS---EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLD 91 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~ 91 (315)
..-+++.+.-|+..|+-++++...+-..+- ....+..++..+. .++.-+..++++|.|+-.+.- .+++... .+
T Consensus 554 ~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~ 630 (745)
T KOG0301|consen 554 LQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LE 630 (745)
T ss_pred hcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HH
Confidence 334457788899999988877554433222 2335556666665 567788889999999988853 4444222 33
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhc---cCCChHHHHHHHHHHHHhccC
Q 021242 92 AISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKT---RNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 92 ~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+...+-..++.++-.++...+....|++. ...+.. + ++ .+.+...+.. +-.+.+..-..+-||.+|+..
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-~---~~-~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-L---EG-KEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-c---ch-HHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 333333222222333455444444445552 233222 2 23 3444443331 122334445567788888888
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVE 196 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~ 196 (315)
+.+..++.+.-.+..++.-+.+..+.+..+
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k 735 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGK 735 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhccCchhh
Confidence 888888877777888888776433333333
No 192
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.79 E-value=5.1 Score=35.08 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhcc-ccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccCCCcHHHHHhh-C-CcHHHH
Q 021242 109 VQSSAATLHSLLVVDSYRPIIGAKR-DIIHSLIEIIKTR--NSPLRSVKDALKALFGIALYPLNRYQVIAL-G-GVQPLF 183 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g-~v~~L~ 183 (315)
+.-+...++-++.++.....+.... +....+..++... ...+..+.-++|++.|+-.++..+..+.+. + .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 3445555555555555544444322 2244555555432 245677788999999999999999888754 3 333333
Q ss_pred HHHhcCC---CcchHHHHHHHHHHHhcCh-hhHH-HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 184 SLVVNGG---RAGIVEDASAVIAQIAGCE-ESVD-EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 184 ~lL~~~~---~~~~~~~a~~~L~~L~~~~-~~~~-~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
..+.... +..++..+..++-|++..- ..+. .-.....+..++..+... ..+++....++.+|.++... + ...
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~-~~d~Ea~~R~LvAlGtL~~~-~-~~~ 236 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE-ESDEEALYRLLVALGTLLSS-S-DSA 236 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC-HTSHHHHHHHHHHHHHHHCC-S-HHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHhcc-C-hhH
Confidence 3332222 4566777788888887521 1111 000011234444433322 24788888999999999853 3 333
Q ss_pred HHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHH
Q 021242 259 EEVKEMAMQVADGIADVAQN-GSAKGKTKAVAL 290 (315)
Q Consensus 259 ~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~ 290 (315)
....+ ..|+...+...... ..+++++.+..|
T Consensus 237 ~~~~~-~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 237 KQLAK-SLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHCC-CCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHH-HcChHHHHHHHHhcccchHHHHHhccC
Confidence 44443 24555555555544 578998887654
No 193
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.72 E-value=25 Score=33.09 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=73.1
Q ss_pred cHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hh--------hHHHHHhcC----CHHHHHHHhhcCCCCChhHHHHHHHH
Q 021242 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EE--------SVDEFKKCC----GIGVLVDLLDLGTGSGHRVKENAVSA 245 (315)
Q Consensus 179 v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~--------~~~~i~~~~----~i~~Lv~ll~~~~~~~~~~~~~a~~~ 245 (315)
+..|+++|. ++.+...+...+..|..+ ++ +.+-+.... .+|.+++..+.. +...|.+...+
T Consensus 273 ~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~---~~~~k~~yL~A 346 (415)
T PF12460_consen 273 LDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA---DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc---ChhhHHHHHHH
Confidence 455777774 245556667777766554 22 222222222 467887777754 45588888999
Q ss_pred HHHHhccCCHHH-HHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 246 LLNLVNFGGERA-AEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 246 L~~l~~~~~~~~-~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
|..+..+-+... ..++ ...+|.|+.-++.+++.++..+-.+|..+-.+.
T Consensus 347 Ls~ll~~vP~~vl~~~l----~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPEL----PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhCCHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999987654332 1222 457888888888899999999999998887655
No 194
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.67 E-value=2.2 Score=29.50 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhC
Q 021242 109 VQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALG 177 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g 177 (315)
.+.+.+++.+++..+..-..+.+ ..+++.++++...+ ....++--|.-+|.-++...+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENS-PVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhC-CccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 34788999999988887777765 47799999999863 566788889999999998888877766554
No 195
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.39 E-value=4.3 Score=42.35 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=95.8
Q ss_pred HHHHHHh----CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh
Q 021242 9 RSLVTKL----GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 9 ~~Lv~~L----~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
|.+++.. ..++|++|..|..+|..+.--+.+ .-.-.+|.|...+. +++|-+|.+++-+++-++.--++-+
T Consensus 922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccccc
Confidence 4445555 345799999999999988755443 22334899999996 7889999999999988874322211
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+ ..-+.|...|.+ .+++++..|..+|.+|-..+ .|.- .|.++.+..+|. +++..+..-|=.....|
T Consensus 997 --e-~~T~~Ly~rL~D----~~~~vRkta~lvlshLILnd----miKV-KGql~eMA~cl~--D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 997 --E-PWTEHLYRRLRD----ESPSVRKTALLVLSHLILND----MIKV-KGQLSEMALCLE--DPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred --c-hhhHHHHHHhcC----ccHHHHHHHHHHHHHHHHhh----hhHh-cccHHHHHHHhc--CCcHHHHHHHHHHHHHh
Confidence 1 124455566665 78899999999999998743 3433 466899999998 45777766666555555
Q ss_pred cc
Q 021242 164 AL 165 (315)
Q Consensus 164 s~ 165 (315)
+.
T Consensus 1063 s~ 1064 (1251)
T KOG0414|consen 1063 SS 1064 (1251)
T ss_pred hh
Confidence 54
No 196
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.84 E-value=5.2 Score=31.07 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYS---SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~la 76 (315)
+..+..|-..|++++|.+|..|+..|-.+.++... ....+.....+..|+.++.. .++.++..++..+...+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999987644 56777777888889999975 46789999999986654
No 197
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.34 E-value=20 Score=30.75 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=88.0
Q ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 9 RSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 9 ~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
+.|+..+ +..++..+...+..|..++.++..+. .-++..|..+.+.+....+--+.+.+..+...+++..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 4445533 45678999999999999998751111 1223444555555555554456666655554443222
Q ss_pred CchHHHHHHH--h---cCC-CCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHh-hccCCChHHHHHHHHHH
Q 021242 88 GLLDAISHVL--R---HHS-TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEII-KTRNSPLRSVKDALKAL 160 (315)
Q Consensus 88 ~~i~~L~~lL--~---~~~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~~a~~aL 160 (315)
+.+..++..+ + ... .....+.....+..++.++...++ ....+++.+-.++ . ..++.++..++.+|
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~--~~~~~~~alale~l 146 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQ--SCDEVAQALALEAL 146 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 2333333331 1 100 012233444556778888865555 1124577778888 5 45777888899999
Q ss_pred HHhccCCCcHHHHHh-hCCcHHHHHHH
Q 021242 161 FGIALYPLNRYQVIA-LGGVQPLFSLV 186 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~-~g~v~~L~~lL 186 (315)
..||. ..+++ ..+...+.+-+
T Consensus 147 ~~Lc~-----~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 147 APLCE-----AEVVDFYSAWKVLQKKL 168 (234)
T ss_pred HHHHH-----HhhccHHHHHHHHHHhc
Confidence 99992 22332 24445555555
No 198
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.94 E-value=58 Score=35.56 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=83.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh-
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS- 85 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~- 85 (315)
-||+|.++=-.+++.+|.......-.+..+ +..-..-.=+.+..-|+.-+.+..=.+|+.++.+|..|-.+.+...+.
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 356666665678878885555444444433 221111111445566666666666679999999999888775432221
Q ss_pred -hcCchHHHHHHHhcCCCCCCHHHHH---HHHHHHHHhhc-CCC--c----hhhhhhccccHHHHHH--HhhccCCChHH
Q 021242 86 -TRGLLDAISHVLRHHSTSTSSAAVQ---SSAATLHSLLV-VDS--Y----RPIIGAKRDIIHSLIE--IIKTRNSPLRS 152 (315)
Q Consensus 86 -~~~~i~~L~~lL~~~~~~~~~~~~~---~a~~~L~~Ls~-~~~--~----~~~i~~~~g~i~~Lv~--ll~~~~~~~~~ 152 (315)
-+..+..+.+.+++ ..+.+|+ .++.+|..|+. ..+ + +..+ + .++|.|++ ++. .-+++
T Consensus 1078 ~lpelw~~~fRvmDD----IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~--~iLPfLl~~gims---~v~ev 1147 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDD----IKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-D--IILPFLLDEGIMS---KVNEV 1147 (1702)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-H--HHHHHHhccCccc---chHHH
Confidence 12345555555553 3334444 45666666652 111 1 1111 1 23455543 222 34678
Q ss_pred HHHHHHHHHHhccC
Q 021242 153 VKDALKALFGIALY 166 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~ 166 (315)
+.-++.++..|+.+
T Consensus 1148 r~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999864
No 199
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.74 E-value=5 Score=31.75 Aligned_cols=73 Identities=8% Similarity=0.159 Sum_probs=61.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLS 76 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la 76 (315)
-+..+..+...|.+++|.++..|+..|-.++++.. .-...+....++..|+.++.. .++.++..++..+...+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999997754 346788889999999999987 67889999999986654
No 200
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.49 E-value=4.8 Score=32.62 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=67.7
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc--
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-- 165 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-- 165 (315)
.+..+..+|.+ .+++.+-.++..+.-.....+ ...+ ...+-++..|+++|+. .+++.+...|+.+|..|..
T Consensus 26 l~~ri~~LL~s----~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 26 LVTRINSLLQS----KSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHhCC----CChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 45667788886 566777767666666554433 3444 4455788999999996 3566777888888887764
Q ss_pred --CCCcHHHHHh---hCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 166 --YPLNRYQVIA---LGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 166 --~~~~~~~i~~---~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.|+...++.- .+.++.+++++. + ....+.++.+|..|-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~-~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQ-D--SSCPETALDALATLL 142 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHh-c--cccHHHHHHHHHHHH
Confidence 3444444332 134445555553 1 345566777776663
No 201
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.32 E-value=17 Score=34.60 Aligned_cols=269 Identities=18% Similarity=0.123 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-----ch--hhhhhcCchHH-
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-----RD--SLMSTRGLLDA- 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-----~~--~~i~~~~~i~~- 92 (315)
..|.++...|..++.+-.-.+..+++ ....+..-+...+++++++++..|..+-..- +. +--...+.+-.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 67888888888888653322333322 2334444445678899999999886664331 10 11111221111
Q ss_pred -----HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 93 -----ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 93 -----L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
.-+...+ ...+..+...|-++.++...+-.+.-=+.....+-.+...=. +.+.-+...|.+++.-+..++
T Consensus 348 ~l~~p~~~~~YD---s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d--~~~~lv~~aA~Ra~~VyVLHp 422 (728)
T KOG4535|consen 348 MLNGPLPRALYD---SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCND--SKNRLVKAAASRALGVYVLHP 422 (728)
T ss_pred HccCCChhhhhh---hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccc--hHHHHHHHHHHhhceeEEecc
Confidence 1122222 122334456666777765322111100000111122222211 123335566888888888888
Q ss_pred CcHHHH-HhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-----ChhhHHHHHhcCC--HHHHHHHhhcCCCCChhHH
Q 021242 168 LNRYQV-IALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-----CEESVDEFKKCCG--IGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 168 ~~~~~i-~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-----~~~~~~~i~~~~~--i~~Lv~ll~~~~~~~~~~~ 239 (315)
..+... ....+......-+. +.....++++.+++.|++. .|..+..-....| +..++..-.....+..+++
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~-d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLE-DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhh-hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 766432 23444444455553 3455678999999999864 2222222222222 4455543332222467899
Q ss_pred HHHHHHHHHHhccCCH--H-HHHHHHHHccCcHHHH-HHHHhhCCHHHHHHHHHHHHHHhhCCCC
Q 021242 240 ENAVSALLNLVNFGGE--R-AAEEVKEMAMQVADGI-ADVAQNGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~--~-~~~~i~~~~~g~~~~L-~~ll~~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.+++.+|.|+...-.. . .-.++.+ |....+ ....-.+...||=+|+..+-||-..+..
T Consensus 502 ~navraLgnllQvlq~i~~~~~~e~~~---~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 502 SNAVRALGNLLQFLQPIEKPTFAEIIE---ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred hHHHHHHhhHHHHHHHhhhccHHHHHH---HHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 9999999998653110 0 1133332 333333 3445556789999999999998766554
No 202
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.26 E-value=7.9 Score=33.77 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=29.9
Q ss_pred CHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 021242 49 SIPYLAEILYS--SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118 (315)
Q Consensus 49 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~ 118 (315)
+||.|.+.|.. .++-+|..|+.+|+.++ ++.+++.|.+++.+ +.+-+++.+.-+|..
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa---------~e~~~~vL~e~~~D----~~~vv~esc~valdm 277 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIA---------DEDCVEVLKEYLGD----EERVVRESCEVALDM 277 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhc---------CHHHHHHHHHHcCC----cHHHHHHHHHHHHHH
Confidence 36666666643 34556666666665554 44455555555554 333344444444443
No 203
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.17 E-value=29 Score=31.50 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=105.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCc-ccc---hhhhhhcC-chHHHHHHHhcCCCCCC---------HHHHHHHHHH
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSI-TSR---DSLMSTRG-LLDAISHVLRHHSTSTS---------SAAVQSSAAT 115 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~-~~~---~~~i~~~~-~i~~L~~lL~~~~~~~~---------~~~~~~a~~~ 115 (315)
+..+-+.|++..+.+...+++.|..+.. ++. +++...-+ ..+.+.+++........ +++|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 8888888988888888899999988887 553 33432222 34556666642210111 1667777666
Q ss_pred HHHhhcC--CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH-hccCC----CcHHHHHhhCCcHHHHHHHhc
Q 021242 116 LHSLLVV--DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG-IALYP----LNRYQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 116 L~~Ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~-Ls~~~----~~~~~i~~~g~v~~L~~lL~~ 188 (315)
+..+... +..+..+.+..+.+..+++-+. .+++++....+.+|+. +..++ ..|..+....++..+..+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~--~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~- 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR--KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS- 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc--CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc-
Confidence 6655542 2345545555677889999888 5688899999999984 44443 34556777888999999764
Q ss_pred CCCc----chHHHHHHHHHHHhcCh
Q 021242 189 GGRA----GIVEDASAVIAQIAGCE 209 (315)
Q Consensus 189 ~~~~----~~~~~a~~~L~~L~~~~ 209 (315)
..++ .+.+.+-..|..+|.++
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCC
Confidence 3344 67888889999988654
No 204
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=14 Score=38.84 Aligned_cols=181 Identities=10% Similarity=0.103 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc-----ccc-hhhhhhcCc
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI-----TSR-DSLMSTRGL 89 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~-----~~~-~~~i~~~~~ 89 (315)
++.+...|...+.+|..+.+..+..-..++..-+.+.++.+ +..+...++.|..+|..+.. ++. .+ ....
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~ 782 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAI 782 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHH
Confidence 33444667777777777765544222233333333444444 77888889998888877762 111 11 1224
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhh--ccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGA--KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL- 165 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~- 165 (315)
+...+..+.-+.. ....+..++. |..+.. .-+.+..+.. ..+++..+..+|. .+++++...|.+.+.-++.
T Consensus 783 lnefl~~Isagl~--gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 783 LNEFLSIISAGLV--GDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHhhhc--ccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHc
Confidence 5555555553211 1222222221 333221 1121222211 1244555556666 5688999999999998886
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.|+.+..--....+|.++.++. +....++.+.-.+|..|.
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~-d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSH-DHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Confidence 5655544444456777777764 333445555555555553
No 205
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.80 E-value=6.4 Score=30.93 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
+..+..+...|++++|.++..|+..|-.+.+.- ..-...+...+++.-|++++.. .++.++...+..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999998764 3456788889999999999953 45789999888885443
No 206
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.71 E-value=5.9 Score=30.82 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=58.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcCCC--HHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYSSS--HAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~la 76 (315)
+..+..|-..|++++|.++..|+..|-.+.++. +.-...+....++..|+.+++... +.++..++..+..-+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 567778888999999999999999999999873 445678888999999999997643 348888888885544
No 207
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.54 E-value=6.4 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-----hC---CHHHHHHHHHHHHH
Q 021242 222 GVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-----NG---SAKGKTKAVALLKI 293 (315)
Q Consensus 222 ~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-----~~---~~~~k~~A~~~L~~ 293 (315)
..|.+-|+.. ++.+|..++.+|..+|..+++..+..+.+ ....+..+...-. .| ...||..|..++..
T Consensus 41 d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G~~~f~~~~~~-~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 41 EYLLKRLKRS---SPHVKLKVLKIIKHLCEKGNSDFKRELQR-NSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHhcCC---CCcchHHHHHHHHHHHhhCCHHHHHHHHH-hHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 4566666654 78999999999999999888777777776 3556677665544 11 35899999999888
Q ss_pred HhhC
Q 021242 294 LVDD 297 (315)
Q Consensus 294 l~~~ 297 (315)
+-.+
T Consensus 117 if~~ 120 (122)
T cd03572 117 IFSY 120 (122)
T ss_pred Hhcc
Confidence 7544
No 208
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=38 Score=32.29 Aligned_cols=154 Identities=14% Similarity=-0.042 Sum_probs=90.9
Q ss_pred hCCCHHHHHHHHc----CCCHHHHHHHHHHHHhcCccc-chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 46 EAGSIPYLAEILY----SSSHAFQENAAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 46 ~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~la~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
+.|.+..++..+. +++...+.-|+..|.|.+..- .+..--..-.+..++.=|.++ .+.++...+..+|..++
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~---~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD---LNEEVQLEAMKCLTMVL 328 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHH
Confidence 5677766666662 234568888999999998873 221111333577777777762 55677777777777776
Q ss_pred cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc--CCCcHHHHHh---hCCcHHHHHHHhcCCCcchH
Q 021242 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL--YPLNRYQVIA---LGGVQPLFSLVVNGGRAGIV 195 (315)
Q Consensus 121 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~---~g~v~~L~~lL~~~~~~~~~ 195 (315)
....+..+...--.+.-.+..++. ..+++++..|...+..|+. ....+..+.+ .+..| ++..|. ++++. .
T Consensus 329 ~~~~~~~l~~~~l~ialrlR~l~~--se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~-d~~p~-v 403 (533)
T KOG2032|consen 329 EKASNDDLESYLLNIALRLRTLFD--SEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQ-DPNPY-V 403 (533)
T ss_pred HhhhhcchhhhchhHHHHHHHHHH--hcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeC-CCChH-H
Confidence 655555543322222345666777 5678888888888888776 3445544443 23333 333332 44443 3
Q ss_pred HHHHHHHHHHhc
Q 021242 196 EDASAVIAQIAG 207 (315)
Q Consensus 196 ~~a~~~L~~L~~ 207 (315)
..||+.....|.
T Consensus 404 a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 404 ARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcC
Confidence 455555554443
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=84.26 E-value=37 Score=34.89 Aligned_cols=178 Identities=16% Similarity=0.077 Sum_probs=105.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----cCCCHHHHHHHHHHHHhcCcccchh-hh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----YSSSHAFQENAAATLLNLSITSRDS-LM 84 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~~~~~-~i 84 (315)
.+-..+.++++..|.+|+..+........ ...+.|....+..++ ++.+..+...|+.+|-.++..-+.. .-
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34455578888999999999998875532 222334444444443 2345567778888887777654311 11
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
...+..+.++..+.. .....+..+..++..... ...- ...++.+...++ +++|..+..+...+....
T Consensus 333 ~~~~v~p~lld~lke----kk~~l~d~l~~~~d~~~n------s~~l-~~~~~~I~e~lk--~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKE----KKSELRDALLKALDAILN------STPL-SKMSEAILEALK--GKNPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhhcchHHHHhhh----ccHHHHHHHHHHHHHHHh------cccH-HHHHHHHHHHhc--CCChhhHHHHHHHHHHHH
Confidence 234567788888874 344555544444443332 0111 133667777788 678998888776666554
Q ss_pred c-CC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 165 L-YP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 165 ~-~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
. .+ .+...---.+.+|.++.... |.+.+++..|..++..+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHIN-DTDKDVRKAALEAVAAV 441 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhcc-CCcHHHHHHHHHHHHHH
Confidence 4 22 22222222466777777774 56778888777666655
No 210
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=84.15 E-value=17 Score=36.76 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-hh-hhhhcCc-hHHHHHHH
Q 021242 22 TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-DS-LMSTRGL-LDAISHVL 97 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~-~i~~~~~-i~~L~~lL 97 (315)
.+.... +|++....++.+.+.+.+.|++..+...++. .....+..+...+.|++...+ +. .+..... ...+-.++
T Consensus 488 ~~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~ 566 (699)
T KOG3665|consen 488 DVLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLL 566 (699)
T ss_pred HHHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 343444 8889999999999999999999999999986 445688999999999987653 21 1111111 11222222
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcCCCc------h----hhhhh-------------ccccHHH-HHHHhhccCCChHHH
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLVVDSY------R----PIIGA-------------KRDIIHS-LIEIIKTRNSPLRSV 153 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~~~~~------~----~~i~~-------------~~g~i~~-Lv~ll~~~~~~~~~~ 153 (315)
.. -...+.-..++.+|..+....+. + ..+.+ ....+.+ +..++.. ...+..+
T Consensus 567 ~~---w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~-s~~~g~~ 642 (699)
T KOG3665|consen 567 NK---WDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL-SKSDGSQ 642 (699)
T ss_pred hh---cchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc-cCCCchH
Confidence 21 02235455677777776643221 0 00000 0112233 4445553 2456778
Q ss_pred HHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHH
Q 021242 154 KDALKALFGIAL-YPLNRYQVIALGGVQPLFSLV 186 (315)
Q Consensus 154 ~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL 186 (315)
..|++++.++.. +++++..+.+.|+++.+...-
T Consensus 643 lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 643 LWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 899999999887 567788888889888776654
No 211
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=84.13 E-value=41 Score=34.05 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh
Q 021242 159 ALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 159 aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
+||++.. +++++..+++.|++..+...+....+.++...+++++.|++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~ 547 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL 547 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh
Confidence 8889887 6789999999999999999997555678889999999999875544
No 212
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.59 E-value=9.7 Score=30.12 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
+..+.+-|.++ ++.++..|+.+|-.+....+.....++.. ..++..|..++.. .++.||+++..+++..+.
T Consensus 39 ~ral~KRl~~~---n~~v~l~AL~LLe~~vkNCG~~fh~evas--k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 39 LKAIMKRLNHK---DPNVQLRALTLLDACAENCGKRFHQEVAS--RDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHCCHHHHHHHhh--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56666677765 78999999999999988776667678876 7899999999988 789999999998887764
No 213
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.32 E-value=31 Score=37.47 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcH-HHHHhhCCcHHHHHHHhc
Q 021242 111 SSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNR-YQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 111 ~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~-~~i~~~g~v~~L~~lL~~ 188 (315)
.+.++...|+...+--..+ .+++..++..+. ...+.++..|+++|.++.. +|... ...++.|+...+.
T Consensus 796 ~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~--e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~----- 865 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSFSQSF---DPYLKLILSVLG--ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN----- 865 (1692)
T ss_pred hHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----
Confidence 5556666666543322222 356777778887 4578899999999999987 44332 3455566555433
Q ss_pred CCCcchHHHHHHHHHHH-hcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 189 GGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 189 ~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
+....+++.|+..+..- ...++......+ .+..-+.+ ++..++..++.++..+|...++
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlD---tgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILD---TGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCC---CchhHHHHHHHHHHHHHHhCCC
Confidence 34678899999988743 333433333322 22222222 3678999999999999976543
No 214
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.10 E-value=7.3 Score=28.21 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh-cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK-CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 181 ~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
..+..+. +|..+++..++..|+.|-.... ..+.. .+.+..+...+++. ++.+--+|+..|..|+....+
T Consensus 7 ~al~~L~-dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLN-DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHcc-CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChH
Confidence 3455564 6788999999999999976544 12222 22356666677764 788999999999999875543
No 215
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=83.00 E-value=7.6 Score=39.59 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=95.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHH-h-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMIS-E-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
-+|.+++..+.-+...+..=+.+|.+.-++-|. ..+. + .-..|.|++-|+-.|..+|-.+..++.-+......-.-
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 467888888855557777888888888876443 3333 3 56788888888888999988888888655433221110
Q ss_pred h-hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 85 S-TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 85 ~-~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
. -.-.+|.++.+=+++.+ ...-+++.|..+|..|+..-+.+........++..|.+.|.+ ..--+++.|.++
T Consensus 946 ~~~~Tlvp~lLsls~~~~n-~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD--kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDN-NMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD--KKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc--HHHHHHHHHHHH
Confidence 0 11245555555554321 135678899999999998443333333334678888888873 244566777765
No 216
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=64 Score=33.48 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHHHh---ccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc--chhhhhhcCchHHH
Q 021242 19 SEQTRAEALAELRLLS---KHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS--RDSLMSTRGLLDAI 93 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~--~~~~i~~~~~i~~L 93 (315)
++-.+..|+..+.+++ ...... +-..+.=.++.+...++++..-+|-.|++++..++.-+ ++... ..+.+..
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPY-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 3455556666666655 222222 23334444666777788888889999999999988543 22222 2356777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhc-cccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAK-RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
...|.+ .....++..|+-+|..+-.+.+ ....+... .+.+..|+++.+. -+.+........+.. ..+++...
T Consensus 508 ~~~l~~---d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne--~End~Lt~vme~iV~-~fseElsP 581 (1010)
T KOG1991|consen 508 HNCLLN---DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE--VENDDLTNVMEKIVC-KFSEELSP 581 (1010)
T ss_pred HHHhcc---CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh--cchhHHHHHHHHHHH-HHHHhhch
Confidence 777773 1566788889999998876554 33334321 2345566666663 233333444433321 11222222
Q ss_pred HHHh--hCCcHHHHHHHhc-C-CCcchHH---HHHHHHHHHhc---ChhhHHHHHh-cC--CHHHHHHHhhcCCCCChhH
Q 021242 172 QVIA--LGGVQPLFSLVVN-G-GRAGIVE---DASAVIAQIAG---CEESVDEFKK-CC--GIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 172 ~i~~--~g~v~~L~~lL~~-~-~~~~~~~---~a~~~L~~L~~---~~~~~~~i~~-~~--~i~~Lv~ll~~~~~~~~~~ 238 (315)
..++ ........+++.. . .++..-+ .|.++|+.+.+ .-+++..+.. -. ..+.+-.++++. -.++
T Consensus 582 fA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~---i~df 658 (1010)
T KOG1991|consen 582 FAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND---ITDF 658 (1010)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh---hHHH
Confidence 2222 2445556677752 1 1222222 35566665433 2233333322 22 356666677764 5677
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
-+.++.++..++...+ +....| =|.++.+..+.+.+.-.--....-+|++.
T Consensus 659 yeE~~ei~~~~t~~~~-~Isp~m----W~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 659 YEELLEIVSSLTFLSK-EISPIM----WGLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred HHHHHHHHhhhhhhhc-ccCHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 7788888888765442 233344 34666666666654443334444445444
No 217
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.66 E-value=35 Score=37.07 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=64.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
.++..++..|.++.+.+|.+|+++|..++..++... ..-++.|+. .-+.++...+|++|+..++......+.-+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----HhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 456778888898899999999999999998776532 233344433 334456678999999999765433221000
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
..-+.+..-+.+ ....++..+..+++.++.
T Consensus 892 ---qyY~~i~erIlD----tgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 892 ---QYYDQIIERILD----TGVSVRKRVIKILRDICE 921 (1692)
T ss_pred ---HHHHHHHhhcCC----CchhHHHHHHHHHHHHHH
Confidence 011122222222 345666777777776664
No 218
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.96 E-value=13 Score=29.23 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=57.2
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh------CCHHHHHHHHHHHHH
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN------GSAKGKTKAVALLKI 293 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~------~~~~~k~~A~~~L~~ 293 (315)
++..+.+-|+++ ++.++-.|+.+|-.+....+.....++.. .+++..|+.++.. .++.||++...+++.
T Consensus 39 a~rai~krl~~~---n~~v~l~AL~LLe~~vkNCG~~fh~evas--~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 39 AVRLLAHKIQSP---QEKEALQALTVLEACMKNCGERFHSEVGK--FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHcCHHHHHHHHh--HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 356677777776 78899999999999888665566677876 7899999998863 478999999998887
Q ss_pred Hhh
Q 021242 294 LVD 296 (315)
Q Consensus 294 l~~ 296 (315)
-+.
T Consensus 114 W~~ 116 (139)
T cd03567 114 WTL 116 (139)
T ss_pred HHH
Confidence 765
No 219
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.92 E-value=12 Score=29.42 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=57.6
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
++..+-+-|+++ ++.++-.|+.+|-.+.+..+.....++.. .+++..|..++.. .++.||+++..+++.-+.
T Consensus 42 a~ral~krl~~~---n~~vql~AL~LLe~~vkNCG~~fh~evas--~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSK---NPNVQLYALLLLESCVKNCGTHFHDEVAS--REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHCCHHHHHHHhh--HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 366777777776 88999999999988888655556677776 7899999998875 688999999998887765
No 220
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.82 E-value=14 Score=28.70 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh---CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN---GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~---~~~~~k~~A~~~L~~l~~ 296 (315)
+..|-+-|+.+ ++.++..|+.+|-.+....++....++.. ...+..|..++.. .++.||+++..+++....
T Consensus 39 ~raL~krl~~~---n~~vql~AL~lLd~~vkNcg~~f~~~i~s--~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYG---NPHVQLLALTLLELLVKNCGKPFHLQVAD--KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHhCChHHHHHHhh--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677778876 88999999999999988766556566665 5778788888875 488999999999888765
No 221
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.49 E-value=12 Score=30.30 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=68.6
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC--chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc----C
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRG--LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV----V 122 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~----~ 122 (315)
.+..+..+|++.++.-+-.++..+...+...+...+.+.+ .+..|+.+|+.+ +.+.+.+.++.+|..+-. .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~---~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP---DPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3556778888888888888888888777766555443333 588889999862 566777777777777652 2
Q ss_pred CCchhhhhh--ccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 123 DSYRPIIGA--KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 123 ~~~~~~i~~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
++....+.. -.++++.++.+++ +......++.+|..+-.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~----~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQ----DSSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHh----ccccHHHHHHHHHHHHH
Confidence 332222221 1244555555555 13455566666666554
No 222
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=79.97 E-value=41 Score=29.49 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=123.0
Q ss_pred hHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCch--------------------hhHHHHhCCCHHHHHHHHcCC--CH
Q 021242 7 TVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAE--------------------IRPMISEAGSIPYLAEILYSS--SH 62 (315)
Q Consensus 7 ~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~--------------------~~~~i~~~g~i~~Lv~lL~~~--~~ 62 (315)
.+..+.+.|... ....+..|+..|+++.....- .-..+....+||.|++.|... .|
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p 83 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP 83 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence 344455555443 346778888888777543210 011223345688888888654 46
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC---C--chhhhhh------
Q 021242 63 AFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD---S--YRPIIGA------ 131 (315)
Q Consensus 63 ~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~---~--~~~~i~~------ 131 (315)
-+|..|..+|.++. ..+..+.+-++.++ +..++++.+-.+|..+--.+ . +.....+
T Consensus 84 mvRhEAaealga~~---------~~~~~~~l~k~~~d----p~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p 150 (289)
T KOG0567|consen 84 MVRHEAAEALGAIG---------DPESLEILTKYIKD----PCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP 150 (289)
T ss_pred HHHHHHHHHHHhhc---------chhhHHHHHHHhcC----CccccchHHHHHHHHHHHhhccccccccCccccCCCCCc
Confidence 68888888887764 33344555555543 44455555555565554211 1 0000000
Q ss_pred -ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCC---cHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 132 -KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG---VQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 132 -~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~---v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
..+-+..|-..|.+ ...+...++ +++..| .+.|+ +..+++=+. .++.-++..+.-++..|-
T Consensus 151 ~~~ssv~~lr~~lld-~t~~l~~Ry--~amF~L----------Rn~g~EeaI~al~~~l~-~~SalfrhEvAfVfGQl~- 215 (289)
T KOG0567|consen 151 ANLSSVHELRAELLD-ETKPLFERY--RAMFYL----------RNIGTEEAINALIDGLA-DDSALFRHEVAFVFGQLQ- 215 (289)
T ss_pred cccccHHHHHHHHHh-cchhHHHHH--hhhhHh----------hccCcHHHHHHHHHhcc-cchHHHHHHHHHHHhhcc-
Confidence 00113334333331 111222222 222111 12233 333444442 233334555665665541
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.-..||.|.+.|... ..++-++-.|..+|..++. +++ ++.|...+.++++.+++.|
T Consensus 216 ---------s~~ai~~L~k~L~d~-~E~pMVRhEaAeALGaIa~---e~~-----------~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 216 ---------SPAAIPSLIKVLLDE-TEHPMVRHEAAEALGAIAD---EDC-----------VEVLKEYLGDEERVVRESC 271 (289)
T ss_pred ---------chhhhHHHHHHHHhh-hcchHHHHHHHHHHHhhcC---HHH-----------HHHHHHHcCCcHHHHHHHH
Confidence 112588888877653 2467788889999998853 232 2334456777788888888
Q ss_pred HHHHHHHh
Q 021242 288 VALLKILV 295 (315)
Q Consensus 288 ~~~L~~l~ 295 (315)
.-.|..+.
T Consensus 272 ~valdm~e 279 (289)
T KOG0567|consen 272 EVALDMLE 279 (289)
T ss_pred HHHHHHHH
Confidence 88876654
No 223
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.58 E-value=15 Score=35.82 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=40.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHH
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLL 73 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 73 (315)
+.+|..++.+....+..+|..|+..|-.+++++++....+ +..|++||.+.++.-....-.+|.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHH
Confidence 5678888888899999999999999999998876655544 467889998877654444444443
No 224
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.85 E-value=17 Score=36.18 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=77.6
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.+..+++...+++-.+|...+..|+.+... ...+..-+=++.++.+..-+.+..|.+|..|+.+|..+-.++...-
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee--- 161 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE--- 161 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc---
Confidence 345666667788889999999999999864 3445555567778888888888889999999999988875432111
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
-.++..+..++++ .++++++..+ |.+++.++..
T Consensus 162 ~~v~n~l~~liqn---DpS~EVRRaa---LsnI~vdnsT 194 (892)
T KOG2025|consen 162 CPVVNLLKDLIQN---DPSDEVRRAA---LSNISVDNST 194 (892)
T ss_pred ccHHHHHHHHHhc---CCcHHHHHHH---HHhhccCccc
Confidence 1235667788876 3678888654 5677655544
No 225
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.50 E-value=20 Score=35.68 Aligned_cols=101 Identities=18% Similarity=0.058 Sum_probs=71.0
Q ss_pred hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 176 LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
+|.+..+++-.. .++..++..+|-+|..+..+...+..-+-.+-...+..-+.+. .+.++-+|+.+|..+=....+
T Consensus 84 ~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr---ep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR---EPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHhcCCCC
Confidence 567777777774 4678899999999999987544444444344456666666654 789999999999998533322
Q ss_pred HHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHH
Q 021242 256 RAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAV 288 (315)
Q Consensus 256 ~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~ 288 (315)
+ +..+...+..+++. ++++||+.|-
T Consensus 160 e--------e~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 160 E--------ECPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred C--------cccHHHHHHHHHhcCCcHHHHHHHH
Confidence 2 14567788889887 4899998654
No 226
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.38 E-value=65 Score=30.84 Aligned_cols=255 Identities=15% Similarity=0.096 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHH
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL-YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVL 97 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL 97 (315)
+++.|..+...+..+.+.+...-. .... .+-..+ ....++....-+.+|..|+.+++.-...+.+..+.|...+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~-~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl 116 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSG-LMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWL 116 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccH-HHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHH
Confidence 457888888888888766533100 0000 011111 2233334445566777777666543334777888888888
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcCCCc-hhh----hhhccccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccCCC--
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLVVDSY-RPI----IGAKRDIIHSLIEIIKTR--NSPLRSVKDALKALFGIALYPL-- 168 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~----i~~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~~~-- 168 (315)
.. .-+....+-.....-+..+.. ... ......++..++++++.. .-+.+.....+..+..+|....
T Consensus 117 ~~-----~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~ 191 (464)
T PF11864_consen 117 EP-----SYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSE 191 (464)
T ss_pred HH-----HHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcH
Confidence 63 111111111111111111111 111 011113445555555521 1123344444454555544221
Q ss_pred ----cHH----HHHhhCCcH-----HHHHHHhcC-CCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCC-
Q 021242 169 ----NRY----QVIALGGVQ-----PLFSLVVNG-GRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTG- 233 (315)
Q Consensus 169 ----~~~----~i~~~g~v~-----~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~- 233 (315)
.+- .++..|.+| .++..|.+- ........+..+++||++.+.+... +..|.++|...+.
T Consensus 192 ~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~------i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 192 DDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA------IRTLCDILRSPDPQ 265 (464)
T ss_pred HHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH------HHHHHHHHcccCcc
Confidence 111 233345544 456666431 2335667788899999876655443 3556666632211
Q ss_pred --CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccC--cHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 234 --SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ--VADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 234 --~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g--~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
.+..+..-|+.++..+.-..++..... +. -.- +++.|...++.+++.+--....++
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-l~-~~~~~vl~sl~~al~~~~~~v~~eIl~~i 325 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPS-LP-FSPSSVLPSLLNALKSNSPRVDYEILLLI 325 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcce-ec-ccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence 123334455666665543321111111 11 011 556666666665555444444433
No 227
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=77.61 E-value=13 Score=27.23 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHh
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~ 98 (315)
|+|..|+.-|..--.+.--.-..++ +.+.+..|++-++.+.....+.++..|..+..++. ..++.+-|+.+.|-++=+
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 6788888877765555443444444 45667777777776666678888899999988875 667778888888766665
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 021242 99 HHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L 116 (315)
. .+++.+...-.++
T Consensus 82 ~----~~~~~~~~id~il 95 (98)
T PF14726_consen 82 N----VEPNLQAEIDEIL 95 (98)
T ss_pred c----CCHHHHHHHHHHH
Confidence 4 4555554444443
No 228
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.20 E-value=88 Score=31.76 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=48.2
Q ss_pred CCHHHHHHHHcC----CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC
Q 021242 48 GSIPYLAEILYS----SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123 (315)
Q Consensus 48 g~i~~Lv~lL~~----~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~ 123 (315)
.+..++.+++.+ ....+.-.|+.++.++..-..+.+. + .+..|--++.+ +...++..|.++|..+|+..
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--p-avs~Lq~flss----p~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--P-AVSVLQLFLSS----PKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--h-HHHHHHHHhcC----cHHHHHHHHHHHHHHHHHhC
Confidence 334455555543 3455667777777777654433332 1 66677777776 56778889999999999866
Q ss_pred Cchhhh
Q 021242 124 SYRPII 129 (315)
Q Consensus 124 ~~~~~i 129 (315)
+.+...
T Consensus 314 P~~v~~ 319 (865)
T KOG1078|consen 314 PQAVTV 319 (865)
T ss_pred Cccccc
Confidence 654433
No 229
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=77.03 E-value=9.1 Score=37.81 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=96.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.-+|.+++++++.+..+|..-+..+-++..+ --+.+.+.-+.|.+..-+.+.++.+++.++..+..++.--..+.+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L- 405 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL- 405 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh-
Confidence 3567778888888888887777777777644 334566677788888777777888888877777666533211111
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
+...+..+-++=. .++..++.+..-+|..++..... ..+. +-++.+...-+++ .-...+..+..+++....
T Consensus 406 n~Ellr~~ar~q~----d~~~~irtntticlgki~~~l~~--~~R~-~vL~~aftralkd--pf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 406 NGELLRYLARLQP----DEHGGIRTNTTICLGKIAPHLAA--SVRK-RVLASAFTRALKD--PFVPARKAGVLALAATQE 476 (690)
T ss_pred cHHHHHHHHhhCc----cccCcccccceeeecccccccch--hhhc-cccchhhhhhhcC--CCCCchhhhhHHHhhccc
Confidence 1111111111111 13334444444444444432111 1121 1222333334442 233456666677766555
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQ 204 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~ 204 (315)
..++... ..-++|.+..+.. +++..++..|..++..
T Consensus 477 ~~~~~~v--a~kIlp~l~pl~v-d~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 477 YFDQSEV--ANKILPSLVPLTV-DPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccchhhh--hhhcccccccccc-CcccchhhHHHHHHHH
Confidence 4433332 2355666666664 4566666666555543
No 230
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=76.95 E-value=65 Score=30.16 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC----CH-HHHHHHHHHHHhcCccc---chhhhhhcCchH
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS----SH-AFQENAAATLLNLSITS---RDSLMSTRGLLD 91 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~-~~~~~a~~~L~~la~~~---~~~~i~~~~~i~ 91 (315)
-++..+|+.+|+|+.-+++..+....++.....+++++.+. .+ ++...=++.|+-++.-. +.+++...+|++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 37899999999999999999999999988888888887542 11 23344445555544332 346778999999
Q ss_pred HHHHHHhcCCCC-----CC---HHHH---HHHHHHHHHhhcCC
Q 021242 92 AISHVLRHHSTS-----TS---SAAV---QSSAATLHSLLVVD 123 (315)
Q Consensus 92 ~L~~lL~~~~~~-----~~---~~~~---~~a~~~L~~Ls~~~ 123 (315)
.+.+++.+...- .+ ++-. ..+..+++|++...
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 999999654211 11 1222 24566677777543
No 231
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=76.48 E-value=19 Score=26.37 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATL 72 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 72 (315)
++.-+..|+++++.+++..+..++..|..++++ +.....+.+-|+.+-|-++=...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345567899999988878888999999999876 67888899999998876666555665555444443
No 232
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=76.16 E-value=96 Score=31.69 Aligned_cols=259 Identities=16% Similarity=0.144 Sum_probs=109.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMST 86 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~ 86 (315)
|..++..++..+...+......+.+++-.....+. ..-.+|.+-+-+ ....+++..++.=+.++..... +.. .
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~--~ 157 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEY--A 157 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhH--H
Confidence 34455555666666777777777766543322332 333455555555 4445566666666655543321 111 1
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.-..+.+-.+... ....+++.++..+...+....-... .+ - +-+++..+.. .+-.+.+..++..++.+...
T Consensus 158 ~~ll~~le~l~~~----eet~vr~k~ve~l~~v~~~~~~~~~-~~--~-lv~l~~~l~~-~d~~~sr~sacglf~~~~~~ 228 (759)
T KOG0211|consen 158 HMLLPPLELLATV----EETGVREKAVESLLKVAVGLPKEKL-RE--H-LVPLLKRLAT-GDWFQSRLSACGLFGKLYVS 228 (759)
T ss_pred HHhhHHHHhhhHH----HHHHHHHHHHHHHHHHHHhcChHHH-HH--H-HHHHHHHccc-hhhhhcchhhhhhhHHhccC
Confidence 1122222222222 2223355666666665532221111 11 1 2222222221 11112233444444443321
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L 246 (315)
-.. ..++...-+..-++- ++.++.++..+..-+.+++..-.. +....+.++.+.++..+. ...+++.|...+
T Consensus 229 ~~~--~~vk~elr~~~~~lc-~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Dd---qdsVr~~a~~~~ 300 (759)
T KOG0211|consen 229 LPD--DAVKRELRPIVQSLC-QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDD---QDSVREAAVESL 300 (759)
T ss_pred CCh--HHHHHHHHHHHHhhc-cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcc---hhhHHHHHHHHH
Confidence 110 111122222222222 233333333343344444332111 333344456666666543 456666666555
Q ss_pred HHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 247 ~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
..+.....+.. ... .-+.+.++...++++.+++-+.....--+
T Consensus 301 ~~l~~l~~~~~--d~~---~~~~~~l~~~~~d~~~~v~~~~~~~~~~L 343 (759)
T KOG0211|consen 301 VSLLDLLDDDD--DVV---KSLTESLVQAVEDGSWRVSYMVADKFSEL 343 (759)
T ss_pred HHHHHhcCCch--hhh---hhhhHHHHHHhcChhHHHHHHHhhhhhhH
Confidence 55543222111 111 23555566666666666666655544444
No 233
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.52 E-value=9.6 Score=29.87 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=57.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcCC-CHH---HHHHHHHHHHhc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYSS-SHA---FQENAAATLLNL 75 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~---~~~~a~~~L~~l 75 (315)
+..+..+-..|++++|.++..|+..|-.+.++. +.-...+.....+..|..++.+. ... +++.++..|...
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 456778888999999999999999999999875 45667787888999999988753 333 888888888444
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=74.93 E-value=53 Score=28.16 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=76.7
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 50 IPYLAE-ILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 50 i~~Lv~-lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
+|.|+- +-+..+++.+...+..|..++.++. .. .+-.+..|..+... +..+.+..+.+.+..+-...+ + .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~--~~~v~~~L~~L~~~----~~~~~~~~~~rLl~~lw~~~~-r-~ 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VC--VPPVLQTLVSLVEQ----GSLELRYVALRLLTLLWKAND-R-H 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cc--hhHHHHHHHHHHcC----CchhHHHHHHHHHHHHHHhCc-h-H
Confidence 344444 4455788999999999999998873 11 12245556666664 445554444444444433221 1 1
Q ss_pred hhhccccHHHHHHHh--h------ccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHH
Q 021242 129 IGAKRDIIHSLIEII--K------TRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASA 200 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll--~------~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~ 200 (315)
+ +.+..++..+ + ......+.......+++.+|....++. ...++.+..+|.++.++.++..++.
T Consensus 73 f----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 73 F----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred H----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 2244444431 1 001122333444567888887444321 2346677788832345566777888
Q ss_pred HHHHHh
Q 021242 201 VIAQIA 206 (315)
Q Consensus 201 ~L~~L~ 206 (315)
.|..||
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 888887
No 235
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.79 E-value=36 Score=30.53 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=86.3
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhh
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EES 211 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~ 211 (315)
..+...+..|. .++......++..+..|+. +++...-++ ..++..+++-+. ++...+...|+.++..+... ...
T Consensus 88 ~al~~~l~~L~--s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslK-NlRS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 88 AALKQALKKLS--SDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLK-NLRSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHHhc--hHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666776 4467777788888888887 344333333 344555666664 45667888888888888553 222
Q ss_pred HHHHHhcCCHHHHHH-HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVD-LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~-ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
... -...++. ++..+..+..-+++.|-.+|..+..+-.+ .-++++|...+++.+++++.+++..
T Consensus 164 i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----------~~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 164 IDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----------QKLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred HHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----------HHHHHHHHHHHhhhchhhhhhhhcc
Confidence 222 1233333 33322123567888899999888764332 1245677777889999999988864
Q ss_pred H
Q 021242 291 L 291 (315)
Q Consensus 291 L 291 (315)
.
T Consensus 229 ~ 229 (334)
T KOG2933|consen 229 F 229 (334)
T ss_pred c
Confidence 3
No 236
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.71 E-value=32 Score=33.79 Aligned_cols=141 Identities=17% Similarity=0.133 Sum_probs=73.4
Q ss_pred hhhhHHHHHHHhCCC----CHHHHHHHHHHHHHHhccCchhhH---HHHhCCCHHHHHHHHcC----CCHHHHHHHHHHH
Q 021242 4 KRRTVRSLVTKLGSV----SEQTRAEALAELRLLSKHDAEIRP---MISEAGSIPYLAEILYS----SSHAFQENAAATL 72 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~---~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L 72 (315)
++..+..+.++++++ .+.++..|+.++..++...-.+.. ..+....++.+.+.|.. .+.+-+...+.+|
T Consensus 391 t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 391 TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 344455555555543 334555555555555432111110 11112245555554432 2333344556666
Q ss_pred HhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHH
Q 021242 73 LNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS 152 (315)
Q Consensus 73 ~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 152 (315)
+|+. ....++.+..++. +....+..++..|.++|+.++..... .+-+.|..++.+...++++
T Consensus 471 GN~g---------~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 471 GNAG---------HPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred hccC---------ChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHH
Confidence 6653 2334555555555 11124567888999999987752221 2245566666654567788
Q ss_pred HHHHHHHHHH
Q 021242 153 VKDALKALFG 162 (315)
Q Consensus 153 ~~~a~~aL~~ 162 (315)
+..|+..|..
T Consensus 533 RiaA~~~lm~ 542 (574)
T smart00638 533 RMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHh
Confidence 8888877765
No 237
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=74.40 E-value=24 Score=32.56 Aligned_cols=237 Identities=19% Similarity=0.143 Sum_probs=128.0
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCH-HHHHHHHHHHHhcCcccc-
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSH-AFQENAAATLLNLSITSR- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~-~~~~~a~~~L~~la~~~~- 80 (315)
.+.|..++..|+++ +...|+.++-.|+.-+.+ +.-|..+...|.+..+++.+.. .+. ..--.++.+++-++.+..
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 35677888888844 448899999999988864 7899999999999999999954 333 334445556667776665
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhc------c-CCChHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTST-SSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKT------R-NSPLRS 152 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~------~-~~~~~~ 152 (315)
..++.+.+....++++++...... ..+...... .+++. ..+ ..+......+.. . .....-
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk-------~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSK-------VQQ--KSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhhH-------HHH--HHHHHHHHHHhccccccccCCccccc
Confidence 344456667777788887100000 000000000 00000 000 101111111100 0 011122
Q ss_pred HHHHHHHHHHhcc---------------CCCcHHHHHhhCCcHHHHHHHhc----C------CCc-----chHHHHHHHH
Q 021242 153 VKDALKALFGIAL---------------YPLNRYQVIALGGVQPLFSLVVN----G------GRA-----GIVEDASAVI 202 (315)
Q Consensus 153 ~~~a~~aL~~Ls~---------------~~~~~~~i~~~g~v~~L~~lL~~----~------~~~-----~~~~~a~~~L 202 (315)
+..|+.++-.++. .+--+..+...|++..+++.+.+ . .+. ...+.++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 3445555555431 12235677778999999998851 0 011 1245588888
Q ss_pred HHHhc-ChhhHHHHHhcC--CHHHHHHH-hhcCCCCChhHHHHHHHHHHHHhccCC
Q 021242 203 AQIAG-CEESVDEFKKCC--GIGVLVDL-LDLGTGSGHRVKENAVSALLNLVNFGG 254 (315)
Q Consensus 203 ~~L~~-~~~~~~~i~~~~--~i~~Lv~l-l~~~~~~~~~~~~~a~~~L~~l~~~~~ 254 (315)
-+-+. .+++........ ..+.+... +..-..........++.++.|++.+++
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 88776 355555554443 23333332 221100123345678899999987553
No 238
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.93 E-value=26 Score=27.20 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC--CHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG--SAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~--~~~~k~~A~~~L~~l~~ 296 (315)
+..+-+-|+++ ++.++..|+.+|-.+....++....++.. .+++..|..++... .+.|++++..+++.-..
T Consensus 39 ~r~l~krl~~~---n~~v~l~AL~lLe~~vkNcg~~f~~ev~s--~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNK---NPHVALLALTLLDACVKNCGSKFHLEVAS--KEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHh--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 55666677766 88999999999999888666566677776 78999999888874 34599999988777654
No 239
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.37 E-value=25 Score=27.48 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHH---HHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAK---GKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~---~k~~A~~~L~~l~~ 296 (315)
+..|-+-|.++ ++.++..|+.+|..+....++....++.. ..++..|..++.+. ... ||+++..+++....
T Consensus 44 ~~~l~krl~~~---~~~vq~~aL~lld~lvkNcg~~f~~ev~~--~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHG---NPNVQLLALTLLDALVKNCGPRFHREVAS--KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTS---SHHHHHHHHHHHHHHHHHSHHHHHHHHTS--HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHhH--HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 46666777776 89999999999999888765566667765 67889999988864 433 89999998887754
No 240
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=73.23 E-value=87 Score=29.83 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=78.7
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHH-HHHHHHHhcChhhH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDA-SAVIAQIAGCEESV 212 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a-~~~L~~L~~~~~~~ 212 (315)
.++..++.+|.+ ..++..+..|++.|..++.++..+.+=-..-++.-+++.-. +++.++...| =..+..+++....+
T Consensus 329 ~iL~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~-ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 329 EILLLLLEVLSD-SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK-DSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHhhCchh
Confidence 345677778874 25677888899999999987654433222233444444443 3444443222 22344444422111
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
.|..+..++.+. +...--.++..+..++..-+-+....++ ..+.|.++.--++.+..||+.|...|-
T Consensus 407 -------~I~~i~~~Ilt~---D~~~~~~~iKm~Tkl~e~l~~EeL~~ll---~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 407 -------CIVNISPLILTA---DEPRAVAVIKMLTKLFERLSAEELLNLL---PDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred -------HHHHHhhHHhcC---cchHHHHHHHHHHHHHhhcCHHHHHHhh---hhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 133334444432 3333334455666776432222112222 456777777777888999999998764
Q ss_pred HH
Q 021242 293 IL 294 (315)
Q Consensus 293 ~l 294 (315)
-+
T Consensus 474 am 475 (516)
T KOG2956|consen 474 AM 475 (516)
T ss_pred HH
Confidence 44
No 241
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.81 E-value=35 Score=34.25 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhh
Q 021242 108 AVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIK 144 (315)
Q Consensus 108 ~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~ 144 (315)
+++-|+-++..+.. ++..+... +++...+.+++.
T Consensus 640 VRQgAlIa~amIm~Q~t~~~~pkv---~~frk~l~kvI~ 675 (929)
T KOG2062|consen 640 VRQGALIALAMIMIQQTEQLCPKV---NGFRKQLEKVIN 675 (929)
T ss_pred HHHHHHHHHHHHHHhcccccCchH---HHHHHHHHHHhh
Confidence 44545544444442 22222222 354555556665
No 242
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=71.28 E-value=11 Score=33.78 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc--------------hhhHHHHhCCCHHHHHHHHc
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA--------------EIRPMISEAGSIPYLAEILY 58 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~i~~~g~i~~Lv~lL~ 58 (315)
.++..|..+++.|.+++...|..|+++|.=++...- .|-..+.+.|++++|+.+|+
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 467889999999999999999999999998875532 24445556666666666664
No 243
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.56 E-value=21 Score=35.41 Aligned_cols=141 Identities=15% Similarity=0.063 Sum_probs=79.9
Q ss_pred hhhhHHHHHHHhCCC----CHHHHHHHHHHHHHHhccCchhh---------HHHHhCCCHHHHHHHHc----CCCHHHHH
Q 021242 4 KRRTVRSLVTKLGSV----SEQTRAEALAELRLLSKHDAEIR---------PMISEAGSIPYLAEILY----SSSHAFQE 66 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~---------~~i~~~g~i~~Lv~lL~----~~~~~~~~ 66 (315)
++..+..+..+++++ ++.++..|+-.+..++....... ......-.++.+...+. ..+..-+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 455566666676643 45677777777777764422221 12222445677777775 24556777
Q ss_pred HHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc
Q 021242 67 NAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR 146 (315)
Q Consensus 67 ~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~ 146 (315)
.++.+|+|+- -...++.|..++.... ..+..++..|.++|+.++.... .-+.+.|..++.+.
T Consensus 509 ~~LkaLgN~g---------~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~--------~~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 509 VYLKALGNLG---------HPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCP--------EKVREILLPIFMNT 570 (618)
T ss_dssp HHHHHHHHHT----------GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-H--------HHHHHHHHHHHH-T
T ss_pred HHHHHhhccC---------CchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCc--------HHHHHHHHHHhcCC
Confidence 8888998874 2346666766666421 1355677778777776633211 12256677777654
Q ss_pred CCChHHHHHHHHHHHH
Q 021242 147 NSPLRSVKDALKALFG 162 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~ 162 (315)
..+++++..|...|..
T Consensus 571 ~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMR 586 (618)
T ss_dssp TS-HHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHh
Confidence 5667888888777765
No 244
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.43 E-value=30 Score=34.57 Aligned_cols=112 Identities=16% Similarity=0.066 Sum_probs=68.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh------CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE------AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
..+.++++|.+.+.-.|..-+++.++++.+-..- ..+.+ +..+..|++-|.+..|=+|-.|+..+-.+..-+.
T Consensus 300 q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d-~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 300 QYEHFDELLDSESFTLRCCFLEICANLVEHFKKD-GQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcc-hhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 4567888999998888988888888887542111 11222 4456677777777888888888888755543321
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~ 123 (315)
+-.-..+..++..+.-+++ .+.-++.+|......|...+
T Consensus 379 k~~~~r~ev~~lv~r~lqD----rss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQD----RSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cccchHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHhcC
Confidence 1111122235555566654 23455666666666665433
No 245
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.06 E-value=47 Score=29.83 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
-+..+.+.+..|.+.+.+....++..|+.++...++....+. .-+|..+++-+++....+-..|+.++..+...-.+.+
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999999999999999999999876665433333 2357777888877777788888888877765554444
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
. + ..+.++..|-.....++.-+++.|-.+|..+.....-. -+++.|...++ +..+.++..++..+.+
T Consensus 165 ~-~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~--~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 165 D-Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQ--HSNPRVRAKAALCFSR 231 (334)
T ss_pred H-H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHh--hhchhhhhhhhccccc
Confidence 3 2 34444444432111133345667777777655422211 23555666666 3456666665554433
No 246
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.66 E-value=78 Score=27.77 Aligned_cols=229 Identities=14% Similarity=0.073 Sum_probs=116.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh
Q 021242 52 YLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA 131 (315)
Q Consensus 52 ~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 131 (315)
.|=+.|.++++..|..|+..|...-..-++..+ ...-+..|+.++.+.- .+......+...+..|...........
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L-~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFL-SRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc-cHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 345677889999999999998766544332222 2333566666664311 233444445666666663222111110
Q ss_pred ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh
Q 021242 132 KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
..++..+++-.....-....+..+...|..|..+......-...+.+..+++.+....|+.-.-.+..++..+...=+
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 112233332211101123456677788887775432221212345667777877655566656667777776644211
Q ss_pred HHHHHhcCCHHHHHHHhh--------cC-CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHH
Q 021242 212 VDEFKKCCGIGVLVDLLD--------LG-TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAK 282 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~--------~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~ 282 (315)
+ ......+.+.+. .. ++...-.++.-...|.+.- .+.+. .. .-++|.|++=+.++++.
T Consensus 157 ---~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl-~s~~~----fa---~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 157 ---I--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCL-SSTPL----FA---PFAFPLLLEKLDSTSPS 223 (262)
T ss_pred ---c--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh-cCcHh----hH---HHHHHHHHHHHcCCCcH
Confidence 0 112333333332 11 0111123333333444422 22222 21 34788999989999999
Q ss_pred HHHHHHHHHHHH-hhCCC
Q 021242 283 GKTKAVALLKIL-VDDGN 299 (315)
Q Consensus 283 ~k~~A~~~L~~l-~~~~~ 299 (315)
+|.-+..+|..+ ..++.
T Consensus 224 ~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 224 VKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHHHCCH
Confidence 999988876655 44544
No 247
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.51 E-value=14 Score=37.85 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHH-HHHHHHcCC-CHHHHHHHHHHHHhcCcccchhhhhhcCchHHHH
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIP-YLAEILYSS-SHAFQENAAATLLNLSITSRDSLMSTRGLLDAIS 94 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~-~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~ 94 (315)
.+|++++.|+..|.+++-..|.+|...+. -|.-. .=-..+..+ -....++.+.-.| ..+...+||..|+
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw--------~~Vr~ndGIkiLl 745 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMW--------EAVRGNDGIKILL 745 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHH--------HHHhcCccHHHHH
Confidence 37899999999999998776777765443 22100 000011110 0111222222222 2356788999999
Q ss_pred HHHh--cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh
Q 021242 95 HVLR--HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA 131 (315)
Q Consensus 95 ~lL~--~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 131 (315)
++|+ .+.+ ....++..|+.+|..|+..+..+..+..
T Consensus 746 ~Ll~~k~P~t-~aD~IRalAc~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 746 KLLQYKNPPT-TADCIRALACRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred HHHhccCCCC-cHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence 9996 3322 3556888999999999999988776643
No 248
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=69.15 E-value=1.3e+02 Score=30.07 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=89.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhh----hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 54 AEILYSSSHAFQENAAATLLNLSITSR-DSLMS----TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 54 v~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~----~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
+..+-....+.+.=|+.+|+-+..+.. ...+. ....+..++..+. ..+..+..++++|.|+-.++.++..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f~~~~g~~~ 624 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLFSNPAGREL 624 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhccCHHHHHH
Confidence 344444556667777788877766653 22221 2224444444444 3456677888999998777667776
Q ss_pred hhhccccHHHHHHHhhccCCChHHHHHHHHH-HHHhcc--CCCcHHHHHhhCCcHHHHHHHhc--C--CCcchHHHHHHH
Q 021242 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKA-LFGIAL--YPLNRYQVIALGGVQPLFSLVVN--G--GRAGIVEDASAV 201 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a-L~~Ls~--~~~~~~~i~~~g~v~~L~~lL~~--~--~~~~~~~~a~~~ 201 (315)
+......+...+.-.+ ..+..-...|..+ ..|.+. ..++-+ .|..+.+...+.. . ++.+.....+-+
T Consensus 625 ~~s~~~~i~~~~~~~~--s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~A 698 (745)
T KOG0301|consen 625 FMSRLESILDPVIEAS--SLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVA 698 (745)
T ss_pred HHHHHHHHhhhhhhhh--cccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 6653111222222222 2222222333333 334443 222211 3444544444421 1 233345567788
Q ss_pred HHHHhcChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 202 IAQIAGCEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 202 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
|.+|+..+.+...+.+.-.+..+++-++..
T Consensus 699 lgtL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 699 LGTLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 888888887777777666788888877753
No 249
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.57 E-value=66 Score=26.51 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCccc-chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
++.++++..+.+..++..|+.++.-+...+ -+.. .++|.|+.+..+ +++.++..|...+..+..-.+.-..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~----~cvp~lIAL~ts----~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK----QCVPTLIALETS----PNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH----HHHhHhhhhhCC----CChHHHHHHHHHHHHHHHHhHHHHH
Confidence 677888888899999999999996554332 1222 268999998887 7889999999888888764433211
Q ss_pred hhhccccHHHHHHHhhccCCChH--H---HHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHh
Q 021242 129 IGAKRDIIHSLIEIIKTRNSPLR--S---VKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~~~~--~---~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
-....| +..-...-..-.++.. . ...-+..|+.+.. +..+|.++ +..+++.+.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~ 140 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFD 140 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHH
Confidence 122235 5555544331111111 1 4456677777766 34455555 556677664
No 250
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=68.45 E-value=91 Score=28.11 Aligned_cols=197 Identities=11% Similarity=0.082 Sum_probs=134.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-----CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-----AGSIPYLAEILYSSSHAFQENAAATLLNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~ 79 (315)
.+....|++.|...+-+.+..++....++.+.+...|...++ ...+..|+.--.. .+++.-++-..|..+..++
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH
Confidence 345667888888888899999999999988776666654444 2333333333111 3566666667778888777
Q ss_pred c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-ch-hhhhhcc-ccHHH-HHHHhhccCCChHHHH
Q 021242 80 R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YR-PIIGAKR-DIIHS-LIEIIKTRNSPLRSVK 154 (315)
Q Consensus 80 ~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~-~~i~~~~-g~i~~-Lv~ll~~~~~~~~~~~ 154 (315)
. .+++...........+.+. ++-++...|..+...+...+. .. .-+.... -+.+. --.++. +++.-.+.
T Consensus 157 ~LakiiL~s~~~~~FF~~vq~----p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~--s~Nyvtkr 230 (342)
T KOG1566|consen 157 FLAKIILESTNFEKFFLYVQL----PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR--SENYVTKR 230 (342)
T ss_pred HHHHHHHcchhHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc--ccceehHH
Confidence 6 6777777788888888886 566777778888887764332 22 2222211 12233 445666 56777889
Q ss_pred HHHHHHHHhccCCCcHHHHHh----hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 155 DALKALFGIALYPLNRYQVIA----LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~~~~~i~~----~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
.++.+|..+-.+..|-..|.+ ...+..+..+|+ ++...++-.|.-+-+....++
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llr-dkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLR-DKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhh-CccccchHHHHHHHHHHhcCC
Confidence 999999999988888766543 367888889996 678888888888887765543
No 251
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.50 E-value=83 Score=31.00 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=68.8
Q ss_pred hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 176 LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
+|.+..+++-+. .++..++..++.+|+.++.+-....+..-.+-+.+|.+-+-+. .+.++..|+.+|+.+-....+
T Consensus 90 ~~~~~h~lRg~e-skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR---E~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 90 AGTFYHLLRGTE-SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR---EKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHhccc-CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHhccCC
Confidence 677888888875 5788999999999998877544444455455677777766554 778898888888776422111
Q ss_pred HHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHH
Q 021242 256 RAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAV 288 (315)
Q Consensus 256 ~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~ 288 (315)
+ + ....-.|..+++.+ +.+||+.|-
T Consensus 166 e---e-----n~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 166 E---E-----NRIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred h---H-----HHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 1 22344677888874 788887654
No 252
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=66.73 E-value=1.6e+02 Score=30.38 Aligned_cols=144 Identities=12% Similarity=0.065 Sum_probs=87.8
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhH
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 212 (315)
.+.+-.+.+.... +.+..+...|+..|-.|+..-..-..=...++.|.+++.+. +....+++.+..++...+..
T Consensus 293 ~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk-ekk~~l~d~l~~~~d~~~ns---- 366 (815)
T KOG1820|consen 293 TGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK-EKKSELRDALLKALDAILNS---- 366 (815)
T ss_pred chHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh-hccHHHHHHHHHHHHHHHhc----
Confidence 3555666665543 45667778888888888762211122223578888888885 44456666666655544320
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHH--HHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGER--AAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
..-...++.+..+++++ ++..+..+...+........+. ....+ .+.++.++....+.++.||..|..+
T Consensus 367 --~~l~~~~~~I~e~lk~k---np~~k~~~~~~l~r~~~~~~~~~~~~~t~----~~l~p~~~~~~~D~~~~VR~Aa~e~ 437 (815)
T KOG1820|consen 367 --TPLSKMSEAILEALKGK---NPQIKGECLLLLDRKLRKLGPKTVEKETV----KTLVPHLIKHINDTDKDVRKAALEA 437 (815)
T ss_pred --ccHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHHHhhcCCcCcchhhH----HHHhHHHhhhccCCcHHHHHHHHHH
Confidence 00011246666778876 8888888777666655433211 11233 3578888888888889999888775
Q ss_pred H
Q 021242 291 L 291 (315)
Q Consensus 291 L 291 (315)
+
T Consensus 438 ~ 438 (815)
T KOG1820|consen 438 V 438 (815)
T ss_pred H
Confidence 4
No 253
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.92 E-value=63 Score=32.33 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=87.2
Q ss_pred HhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC
Q 021242 45 SEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124 (315)
Q Consensus 45 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 124 (315)
+...++|.|..-+++.+..+|+.++..+-..+..-+-.. +..-.+|.|-.+... ..+..++.+++-++..+...-+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~-vk~~ilP~l~~l~~~---tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF-VKQAILPRLKNLAFK---TTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH-HHHHHHHHhhcchhc---ccchHHHHHHHHHHHHHHHHHH
Confidence 444567777777777888899999999977765533222 244467888777543 1567788888888888872111
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
+..+.+ . +.++....+ ..++.+....+++..++....-....++-..++|.++.+..
T Consensus 462 -~~~v~d--~-~lpi~~~~~--~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 462 -KAAVLD--E-LLPILKCIK--TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred -HHHhHH--H-HHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 222222 2 455555555 34788888888888887775444344445688888888875
No 254
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=65.18 E-value=89 Score=26.77 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC-C-----C-c----------chHHHHHHHHHHHhcChhhH
Q 021242 150 LRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNG-G-----R-A----------GIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 150 ~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~-~-----~-~----------~~~~~a~~~L~~L~~~~~~~ 212 (315)
......++..+..|..+++....+.+.+.++.+.+.|.+- + . . .+...=...|..|+.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 5566778888888888888777777888888888888532 1 0 1 11112335677889999999
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHH-HHHhhCCHHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA-DVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~-~ll~~~~~~~k~~A~~~L 291 (315)
+.+.+.+....+.++.... +. ......++.++ +++- .|-.+.++ ..+.+++..+|..|.+.|
T Consensus 158 ~lLe~~~if~~l~~i~~~~---~~--~~l~klil~~L--DY~~----------~~~~R~iLsKaLt~~s~~iRl~aT~~L 220 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLS---SR--DDLLKLILSSL--DYSV----------DGHPRIILSKALTSGSESIRLYATKHL 220 (226)
T ss_pred HHHHHCCHHHHHHHHHccC---ch--HHHHHHHHhhC--CCCC----------ccHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9888777778888888753 22 22333455555 2221 23333333 678899999999999988
Q ss_pred HHHh
Q 021242 292 KILV 295 (315)
Q Consensus 292 ~~l~ 295 (315)
+.+-
T Consensus 221 ~~ll 224 (226)
T PF14666_consen 221 RVLL 224 (226)
T ss_pred HHHh
Confidence 7663
No 255
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.11 E-value=66 Score=32.34 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=84.0
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CCcH-----H-HHHh-hCC--------cHHHHHHHhcCCCcchHHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNR-----Y-QVIA-LGG--------VQPLFSLVVNGGRAGIVED 197 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~-----~-~i~~-~g~--------v~~L~~lL~~~~~~~~~~~ 197 (315)
|++..|++.+...-..+...+.-.+.|.+++.+ ++.. . .+++ ... ...+.++|. +.+..++-.
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLd-ses~tlRc~ 318 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLD-SESFTLRCC 318 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhc-ccchhHHHH
Confidence 445556666653223455666777888888873 2221 1 2222 122 234566664 233444433
Q ss_pred HHHHHHHHhcChhhHHHHHhc-C-CHHHHHHHhhcC-CCCChhHHHHHHHHHHHHhccCCH--HHHHHHHHHccCcHHHH
Q 021242 198 ASAVIAQIAGCEESVDEFKKC-C-GIGVLVDLLDLG-TGSGHRVKENAVSALLNLVNFGGE--RAAEEVKEMAMQVADGI 272 (315)
Q Consensus 198 a~~~L~~L~~~~~~~~~i~~~-~-~i~~Lv~ll~~~-~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~~~L 272 (315)
.+.+..|+-.+-.....++++ . -+..|+.++... .+.++.++..|+..+..++..++. .-+++ +++..
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-------v~~lv 391 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-------VIRLV 391 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-------HHHHH
Confidence 444555553321111123321 1 245555555321 014889999999999999875432 12233 44455
Q ss_pred HHHHhhCCHHHHHHHHHHHHHH
Q 021242 273 ADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 273 ~~ll~~~~~~~k~~A~~~L~~l 294 (315)
..-+++.+..||++|.+++.-|
T Consensus 392 ~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 392 GRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH
Confidence 6778888999999999987665
No 256
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.90 E-value=2e+02 Score=30.78 Aligned_cols=195 Identities=16% Similarity=0.179 Sum_probs=116.8
Q ss_pred hhHHHHHHHhCCCC----H--------HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC----------CCHH
Q 021242 6 RTVRSLVTKLGSVS----E--------QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS----------SSHA 63 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~----~--------~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~ 63 (315)
..+-.+|..|+++- + ...+.-.++++...+-+-..+..+.++|+...|...|.. .|..
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 45667888888741 1 344555677888887777788899999999999888842 1222
Q ss_pred HHHHHHHHHHhc-----Ccccch--------------hhhhhcC---------chHHHH----HHHhcCCCCCCHHHHHH
Q 021242 64 FQENAAATLLNL-----SITSRD--------------SLMSTRG---------LLDAIS----HVLRHHSTSTSSAAVQS 111 (315)
Q Consensus 64 ~~~~a~~~L~~l-----a~~~~~--------------~~i~~~~---------~i~~L~----~lL~~~~~~~~~~~~~~ 111 (315)
+-..-..+|+.+ +.+..+ .+....| .|..|. +.+.+ +....-..
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvp----pfLtSEsa 875 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVP----PFLTSESA 875 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCC----chhhhhHH
Confidence 222233333332 222211 1112222 111121 11111 11111235
Q ss_pred HHHHHHHhhcC------C-----CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCc
Q 021242 112 SAATLHSLLVV------D-----SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGV 179 (315)
Q Consensus 112 a~~~L~~Ls~~------~-----~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v 179 (315)
|+..+..+-.+ + +.+..|-.+ |++..|+..+- ...++.+..-++.+-.+++ +|.|....-..|.+
T Consensus 876 AcaeVfelednifavntPsGqfnpdk~~iyna-gavRvlirslL--lnypK~qlefl~lleSlaRaspfnaelltS~gcv 952 (2799)
T KOG1788|consen 876 ACAEVFELEDNIFAVNTPSGQFNPDKQKIYNA-GAVRVLIRSLL--LNYPKLQLEFLNLLESLARASPFNAELLTSAGCV 952 (2799)
T ss_pred HHHHHhhcccceeeeccCCCCcCchHhhhccc-chhHHHHHHHH--hhChHHHHHHHHHHHHHhhcCCCchhhhhcccHH
Confidence 66666665321 1 124555555 55899998776 4578999999999999998 77888888788999
Q ss_pred HHHHHHHhc--CCCcchHHHHHHHHHHHhc
Q 021242 180 QPLFSLVVN--GGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 180 ~~L~~lL~~--~~~~~~~~~a~~~L~~L~~ 207 (315)
..|++.++. .+..++.-.+++++..|+.
T Consensus 953 ellleIiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 953 ELLLEIIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred HHHHHHhhhhhcCCchHhhccHHHHHHHhh
Confidence 999998863 2345566677777776654
No 257
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.92 E-value=51 Score=31.47 Aligned_cols=142 Identities=12% Similarity=0.027 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHH---H
Q 021242 149 PLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGV---L 224 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~---L 224 (315)
+...+..|++.|.|.+.. |+-+.... .-.+..++.-|.++.+.++.-.++..|..+...-.+++ ++...++. +
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~--l~~~~l~ialrl 347 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD--LESYLLNIALRL 347 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc--hhhhchhHHHHH
Confidence 346777899999999986 44333322 33455666666644456676666666665543222222 11122333 3
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
..+..+ .+++.+..+...+..|+.-....+...-.+.-.+...+|+.-+++.+|.+-..+...++-+..
T Consensus 348 R~l~~s---e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 348 RTLFDS---EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred HHHHHh---cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence 334444 367788777776666654322222222221012355566666777788777777766665544
No 258
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=63.45 E-value=84 Score=25.92 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcc-Cch----hhHHHHh-C------CCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--hh--
Q 021242 22 TRAEALAELRLLSKH-DAE----IRPMISE-A------GSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL--MS-- 85 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~-~~~----~~~~i~~-~------g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~--i~-- 85 (315)
+|..|+..|..+++. ++. ++..+.= . .-.+.+-.++.+.++++|..|+.+|..+-.+...-+ ..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 578888889888877 322 3333321 1 234444555577888999999998877644432100 00
Q ss_pred -----------------hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc-hhhhhhccccHHHHH----HHh
Q 021242 86 -----------------TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY-RPIIGAKRDIIHSLI----EII 143 (315)
Q Consensus 86 -----------------~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv----~ll 143 (315)
-...-..|+..|... .+.........++..|...-++ |-. .|+++.++ .++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E---~~~~~l~q~lK~la~Lv~~tPY~rL~----~~ll~~~v~~v~~~l 154 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAE---KSPPVLTQLLKCLAVLVQATPYHRLP----PGLLTEVVTQVRPLL 154 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHccCChhhcC----HhHHHHHHHHHHHHH
Confidence 011234466677652 3455666777888888764443 332 24455555 455
Q ss_pred hccCCChHHHHHHHHHHHHhccC
Q 021242 144 KTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 144 ~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
. +.|++++..++.++..+...
T Consensus 155 ~--~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 155 R--HRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred h--cCCCcHHHHHHHHHHHHHcC
Confidence 5 45778888888888777653
No 259
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=62.88 E-value=37 Score=27.99 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=56.0
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
..+++.+++..-+++...+..|+..+.......--+- .-.+|.|+.|..++++.++..|...+..+...
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 4678888998899999999999999998875542221 23589999999999999999999999888644
No 260
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=62.19 E-value=1.2e+02 Score=30.64 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
...|.-|+.+|.+.+-.+.+.+-..+..+...++..+ .+..|+++.-+ .++. .++.+|.. ..+-.
T Consensus 3 ~~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~l~~y~~~---t~s~----~~~~il~~---~~~P~ 67 (668)
T PF04388_consen 3 QASITELLSLLESNDLSVLEEIKALLQELLNSDREPW-----LVNGLVDYYLS---TNSQ----RALEILVG---VQEPH 67 (668)
T ss_pred cccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH-----HHHHHHHHHhh---cCcH----HHHHHHHh---cCCcc
Confidence 3457889999999988888877777754433332222 24555555432 1232 34444443 22110
Q ss_pred hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
...++..|=..+. .+..+..++..|..+.+ .|.....|.+...++.|+++|..+.+..+...|+.+|..|
T Consensus 68 -----~K~~~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 68 -----DKHLFDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred -----HHHHHHHHHHHHc----CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 0133344444555 34677889999999888 5777789999999999999997555555555565555544
No 261
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=62.14 E-value=15 Score=27.42 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcc
Q 021242 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAG 193 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~ 193 (315)
....++.|..|+..|+.-..+++.|+++.|+.+|. +++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~-HeN~D 102 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLS-HENTD 102 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC-CCCcc
Confidence 35678889999999998888999999999999995 45543
No 262
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=61.71 E-value=38 Score=31.26 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=58.4
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHH-HHHHHHHHhcChhhHHH
Q 021242 136 IHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVED-ASAVIAQIAGCEESVDE 214 (315)
Q Consensus 136 i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~-a~~~L~~L~~~~~~~~~ 214 (315)
+..+++=+.+ ..+..++..++-.|..-+.+++-+..+..+|.+..+++.+...++...... +++++..++.+...-..
T Consensus 23 v~ylld~l~~-~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLES-SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhccc-CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 6777877773 345677888888888888899999999999999999999953343323333 34444444444333333
Q ss_pred HHhcCCHHHHHHHhh
Q 021242 215 FKKCCGIGVLVDLLD 229 (315)
Q Consensus 215 i~~~~~i~~Lv~ll~ 229 (315)
+.+......++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 323233333344443
No 263
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.91 E-value=66 Score=31.64 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=72.5
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc---chhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS---RDSL 83 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~---~~~~ 83 (315)
.+-.+++.+.+++..+|...+..|+.+... ........-+|.++.|.+-+-+..+.++..|+.+|..+-... ++.+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 455667777888888999999888888743 333445666788888888887788889999999996665332 2333
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
...|..++++ .++.+++..+ +.|+...+..
T Consensus 171 ------~n~l~~~vqn---DPS~EVRr~a---llni~vdnsT 200 (885)
T COG5218 171 ------VNLLKDIVQN---DPSDEVRRLA---LLNISVDNST 200 (885)
T ss_pred ------HHHHHHHHhc---CcHHHHHHHH---HHHeeeCCCc
Confidence 2356777775 2556777544 5777655443
No 264
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=60.74 E-value=9.8 Score=28.40 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHH
Q 021242 24 AEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAF 64 (315)
Q Consensus 24 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 64 (315)
-..+..+..++.. |+-...+++.|+++.|+.+|.+.+.++
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 4567778888765 788889999999999999998877654
No 265
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=58.99 E-value=1.5e+02 Score=29.88 Aligned_cols=129 Identities=14% Similarity=0.078 Sum_probs=76.6
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCC
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
++|.|..-+++ .+..+++.+...+-..+..-+. ..+. ..++|.+-++... +.+..++.+++-++..+. +
T Consensus 390 IlplL~~S~~~----~~~~iQ~~~L~~lptv~e~iD~-~~vk--~~ilP~l~~l~~~-tt~~~vkvn~L~c~~~l~---q 458 (700)
T KOG2137|consen 390 ILPLLYRSLED----SDVQIQELALQILPTVAESIDV-PFVK--QAILPRLKNLAFK-TTNLYVKVNVLPCLAGLI---Q 458 (700)
T ss_pred HHHHHHHHhcC----cchhhHHHHHHhhhHHHHhccH-HHHH--HHHHHHhhcchhc-ccchHHHHHHHHHHHHHH---H
Confidence 44444444443 5677788888888877754442 2222 2557777776443 567788889999998887 2
Q ss_pred cHHHHHhhCCcHHHHHHHhc--CCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 169 NRYQVIALGGVQPLFSLVVN--GGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 169 ~~~~i~~~g~v~~L~~lL~~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
... ..-+++.+..++.. ..++.+.-..+.+..++.....+..++..+..+|.++-+...+
T Consensus 459 ~lD---~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 459 RLD---KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHH---HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 222 22334444444421 2466667777777777765433334444456778877777653
No 266
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=57.70 E-value=1.4e+02 Score=27.60 Aligned_cols=127 Identities=17% Similarity=0.079 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhccCCC-cHHHHHhhCCcHHHHHHHhcCCCcch--HHHHHHHHHHHhcChhh-------------HHHH
Q 021242 152 SVKDALKALFGIALYPL-NRYQVIALGGVQPLFSLVVNGGRAGI--VEDASAVIAQIAGCEES-------------VDEF 215 (315)
Q Consensus 152 ~~~~a~~aL~~Ls~~~~-~~~~i~~~g~v~~L~~lL~~~~~~~~--~~~a~~~L~~L~~~~~~-------------~~~i 215 (315)
.+..|+..|..|+..-+ ....++ .+.+..++.-..+++.... ++.|+.++..|+..... ...+
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 45678888888885311 111111 1233333332223444433 45588888888764321 2223
Q ss_pred HhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 216 KKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
.....+|.|- ......+-.+..|+..+...-..-+. ..+ .+++|.++..+++++..|+..|+.+
T Consensus 306 f~~~v~peL~----~~~~~~piLka~aik~~~~Fr~~l~~---~~l----~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 306 FSQHVLPELQ----PDVNSHPILKADAIKFLYTFRNQLPK---EQL----LQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHTCHHHH-----SS-S-HHHHHHHHHHHHHHGGGS-H---HHH----HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHhHHHhc----ccCCCCcchHHHHHHHHHHHHhhCCH---HHH----HHHHHHHHHHhCCCCcchhhhhhhh
Confidence 3333334332 11123677888899988887554321 233 4599999999999999999999865
No 267
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.42 E-value=1.3e+02 Score=26.31 Aligned_cols=184 Identities=22% Similarity=0.253 Sum_probs=105.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhcc----CchhhHHHHh------C-CCHHHHHHHHcC--CCHHHHHHHHHHHHhcCc
Q 021242 11 LVTKLGSVSEQTRAEALAELRLLSKH----DAEIRPMISE------A-GSIPYLAEILYS--SSHAFQENAAATLLNLSI 77 (315)
Q Consensus 11 Lv~~L~~~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~------~-g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~ 77 (315)
.+.+|++..+..=..|+..+..+... ++..+..+.+ . |..+.+..++-. ..+...+.+..+|..++.
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~ 91 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTP 91 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhc
Confidence 46677887777777888777777533 2333333331 2 566666666632 123456777888877776
Q ss_pred ccchhhhhhc---------CchHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhhcCCC--c---------hhhhhhcc
Q 021242 78 TSRDSLMSTR---------GLLDAISHVLRHHSTSTS----SAAVQSSAATLHSLLVVDS--Y---------RPIIGAKR 133 (315)
Q Consensus 78 ~~~~~~i~~~---------~~i~~L~~lL~~~~~~~~----~~~~~~a~~~L~~Ls~~~~--~---------~~~i~~~~ 133 (315)
.....++... ..+|.++.-+.+ +. .+....+|..|..++.... + +..+....
T Consensus 92 ~~~~~lig~~~~rll~~~la~LP~ll~~~d~----~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~ 167 (262)
T PF14225_consen 92 LPDDPLIGDSQSRLLFLLLALLPRLLHAFDD----PNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKD 167 (262)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHHHhcc----cccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHH
Confidence 6544443222 234444444443 22 1334466677777774321 1 11111111
Q ss_pred c--------------------cHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcc
Q 021242 134 D--------------------IIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAG 193 (315)
Q Consensus 134 g--------------------~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~ 193 (315)
. .+..|+.+|. ++.+.++...+..|+.+-...+.+.. .....+.+++++++. +
T Consensus 168 dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~--n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t----~ 240 (262)
T PF14225_consen 168 DFLSQVVSYLREAFFPDHEFQILTFLLGLLE--NGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT----D 240 (262)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC----c
Confidence 1 2334556666 55667778888888888776655544 445678888898852 3
Q ss_pred hHHHHHHHHHHH
Q 021242 194 IVEDASAVIAQI 205 (315)
Q Consensus 194 ~~~~a~~~L~~L 205 (315)
....|+.+|.+.
T Consensus 241 ~~~eAL~VLd~~ 252 (262)
T PF14225_consen 241 LWMEALEVLDEI 252 (262)
T ss_pred cHHHHHHHHHHH
Confidence 566777777764
No 268
>PRK14707 hypothetical protein; Provisional
Probab=56.97 E-value=3.7e+02 Score=31.21 Aligned_cols=236 Identities=13% Similarity=0.029 Sum_probs=124.5
Q ss_pred hHHHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHH-HhcCcccc-hhh
Q 021242 7 TVRSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATL-LNLSITSR-DSL 83 (315)
Q Consensus 7 ~i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L-~~la~~~~-~~~ 83 (315)
++...+.-| +.++......|+.+|..-..++++-++.+-..|+-..|=-+-+..+..+...++..| ..++.+.+ .+-
T Consensus 374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~ 453 (2710)
T PRK14707 374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKA 453 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhh
Confidence 344444444 466777888888999877777788888887777555555555677777777888877 44544433 222
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+ ++-.|-..+..|..= .+++-..+.+-.....|+...+-+..|.- .. +..-++-|++..+.+.+...+.+.-..+
T Consensus 454 ~-~p~~va~~LnalSKW--Pd~p~c~~aa~~La~~l~~~~~l~~a~~~-q~-~~~~L~aLSK~Pd~~~c~~A~~~lA~rl 528 (2710)
T PRK14707 454 L-DPINVTQALDALSKW--PDTPICGQTASALAARLAHERRLRKALKP-QE-VVIALHSLSKWPDTPICAEAASALAERV 528 (2710)
T ss_pred c-ChHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhcccHHHHhhcCH-HH-HHHHHHHhhcCCCcHHHHHHHHHHHHHh
Confidence 3 333344444444321 02333333333333455655555555543 24 3344444444334444444444444444
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh-hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE-ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
.....-...+ ..--+..++.-|...++...++.+..-|..+...+ ..+..+ +...|..++..|+.- +....+++.+
T Consensus 529 ~~~~~l~~~~-~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSKW-P~~~aC~~Aa 605 (2710)
T PRK14707 529 VDELQLRKAF-DAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSKW-PDTAVCAEAV 605 (2710)
T ss_pred ccchhhhhhh-hhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhccC-CCcHHHHHHH
Confidence 4332222222 22223334444444566666777666666554433 333333 455677777777632 2355666555
Q ss_pred HHHHHHHh
Q 021242 243 VSALLNLV 250 (315)
Q Consensus 243 ~~~L~~l~ 250 (315)
.++-..+.
T Consensus 606 ~~LA~~l~ 613 (2710)
T PRK14707 606 NALAERLV 613 (2710)
T ss_pred HHHHHHhc
Confidence 55555554
No 269
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=56.12 E-value=85 Score=29.16 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHhh
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~~ 296 (315)
++..+.+-|.+. ++.+...|+..|..+....+.+.+.++-. ..+...|..++. +.-++|+++-..+++..++
T Consensus 46 ~lk~i~KRln~~---dphV~L~AlTLlda~~~NCg~~~r~EVsS--r~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHK---DPHVVLQALTLLDACVANCGKRFRLEVSS--RDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCC---CcchHHHHHHHHHHHHHhcchHHHHHHhh--hhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 466677777765 78888889888888876555567788877 788899999999 5678999998888887776
No 270
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.05 E-value=2e+02 Score=31.51 Aligned_cols=178 Identities=13% Similarity=0.026 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-CCChHHHHHHHHHHHHhccCC-CcHHHHHhhCCcHH
Q 021242 104 TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIALYP-LNRYQVIALGGVQP 181 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~ 181 (315)
+..+++.....+|.++-..+.....-. -..+++.|-.+.... ....++.+.+...|.-++++- ..-..-.-.+.++.
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidt 932 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDT 932 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHH
Confidence 456777777788888776554332222 122333333333311 113456666777777777641 11001112456777
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC---CHHHHHHHhhcCCCCChhHHHHHHHH--HHHHhccCCHH
Q 021242 182 LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC---GIGVLVDLLDLGTGSGHRVKENAVSA--LLNLVNFGGER 256 (315)
Q Consensus 182 L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~~~~~~~~~a~~~--L~~l~~~~~~~ 256 (315)
+..+-.+..+..+.-.|.+.+++++..-.. .+...| .-...+..+... ..+.++-.+++|+ +.+|..+..|
T Consensus 933 l~~fs~QktdlNISltAi~lfWtvsDfl~~--km~S~sed~~~~~~~e~~~ss-~~~~~~l~e~lwi~ll~~L~~~~~d- 1008 (1610)
T KOG1848|consen 933 LLVFSRQKTDLNISLTAIGLFWTVSDFLKN--KMFSTSEDSCAYNSVEDLYSS-MKSKEILPEVLWIMLLVHLADLCED- 1008 (1610)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHh--hhhccchhhhhhcchhhhccc-ccchhhhhhHHHHHHHHHHHHHhcc-
Confidence 777776556677777888888887653222 122111 122333333321 1245555566665 3344433322
Q ss_pred HHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 257 AAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 257 ~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
.+.+ ++ .|+++.+.+++.+.......+|..
T Consensus 1009 sr~e-VR--ngAvqtlfri~~Shg~~l~~~aW~ 1038 (1610)
T KOG1848|consen 1009 SRAE-VR--NGAVQTLFRIFNSHGSKLGTNAWA 1038 (1610)
T ss_pred chHH-Hh--hhHHHHHHHHHhhhcccCChhHHH
Confidence 2233 44 899999999998865555555554
No 271
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=55.15 E-value=57 Score=32.30 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=71.1
Q ss_pred hhhHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHhcCc
Q 021242 5 RRTVRSLVTKLG----SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS---SHAFQENAAATLLNLSI 77 (315)
Q Consensus 5 ~~~i~~Lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~la~ 77 (315)
+..++.+...|. ..+.+.+..++.+|.|+... ..++.|..++.+. ...+|..|+++|..++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 445556666554 45667888888888888532 2577888888665 56788999999987743
Q ss_pred ccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 78 TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 78 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
..++ ...+.++.++.+. ..+.++|..|..+|.. ..+. . ..+..+...+.. +.+.++.....
T Consensus 554 ~~~~------~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~--~~P~-~-------~~l~~i~~~l~~-E~~~QV~sfv~ 614 (618)
T PF01347_consen 554 HCPE------KVREILLPIFMNT--TEDPEVRIAAYLILMR--CNPS-P-------SVLQRIAQSLWN-EPSNQVASFVY 614 (618)
T ss_dssp T-HH------HHHHHHHHHHH-T--TS-HHHHHHHHHHHHH--T----H-------HHHHHHHHHHTT--S-HHHHHHHH
T ss_pred cCcH------HHHHHHHHHhcCC--CCChhHHHHHHHHHHh--cCCC-H-------HHHHHHHHHHhh-CchHHHHHHHH
Confidence 3222 2356677888753 2577888777655544 2121 1 224556666653 23455544443
Q ss_pred H
Q 021242 158 K 158 (315)
Q Consensus 158 ~ 158 (315)
.
T Consensus 615 S 615 (618)
T PF01347_consen 615 S 615 (618)
T ss_dssp H
T ss_pred H
Confidence 3
No 272
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.13 E-value=1e+02 Score=28.68 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
++.++..|+.++++.+..+|..|+..|..+.+..+. ....--.-+++.+..+..+.+..+|.....++-.+........
T Consensus 56 k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~-~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 56 KGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred ccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 456778899999999999999999999999876433 2222235567777888877777777777777755443332111
Q ss_pred hh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 84 MS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 84 i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
+. ..=..+-+-..+.+ ..++++..+...|..|..
T Consensus 135 ~sp~~~l~~~yi~~AMTh----it~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTH----ITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred hcchHHHHHHHHHHHHhh----ccHHHHHhhHHHHHHHHH
Confidence 10 00023333334444 678999999999888874
No 273
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=54.35 E-value=1.1e+02 Score=24.48 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=69.3
Q ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 8 VRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 8 i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.+.|.+.|+.. ++.+|.++++.|..+..-||-..+.+....- .-. -...+..... ..+.+........-..-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~---~~l~~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTD---ISLPMMGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchh---hHHhhccCCCchHHHHH
Confidence 34556666644 6899999999999997776643332222111 000 0001111111 11222221111111112
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.-++..|+++|++++- ..-...+..++.++-... ..+.. .-+-++|.+++.++.+ ++..++....-|..|
T Consensus 85 ~vvi~~L~~iL~D~sL---s~~h~~vv~ai~~If~~l~~~cv~--~L~~viP~~l~~i~~~--~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 85 TVVINALMRILRDPSL---SSHHTAVVQAIMYIFKSLGLKCVP--YLPQVIPIFLRVIRTC--PDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHhcCcCchh--HHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3367889999986321 122334555555544222 22222 2245799999999953 446655555555443
No 274
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.97 E-value=1.5e+02 Score=25.83 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHcCC-----------CHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHH
Q 021242 47 AGSIPYLAEILYSS-----------SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAAT 115 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~ 115 (315)
.-.+|.|+.+|... +......|+..|..+ .+..+.++++++++.+ + +... ..
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~---------re~~A~~~li~l~~~~---~--~~~~---~l 92 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF---------REERALPPLIRLFSQD---D--DFLE---DL 92 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH---------hhhhhHHHHHHHHcCC---c--chHH---HH
Confidence 45688888888541 112234444444333 3667899999999751 2 2111 00
Q ss_pred HHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHH
Q 021242 116 LHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVI 174 (315)
Q Consensus 116 L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~ 174 (315)
+......+-.+....-++|=++.|-.++.++.-+.-++..|+++|..+.. ++..|..++
T Consensus 93 ~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 93 FGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred HcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 11100001111111112344889999998654445677889999999988 566677775
No 275
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.63 E-value=98 Score=22.98 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHH-----Hh-hCCHHHHHHHHHHHHHH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADV-----AQ-NGSAKGKTKAVALLKIL 294 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~l-----l~-~~~~~~k~~A~~~L~~l 294 (315)
+..+.+-|.+. ++.++..|+.+|..+.+.++++...++.. ..+...++.+ .. ..+..+|+++..+++..
T Consensus 39 ~~~l~kRl~~~---~~~~~lkaL~lLe~lvkN~g~~f~~~i~~--~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNK---NPHVVLKALTLLEYCVKNCGERFHQEVAS--NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCC---cHHHHHHHHHHHHHHHHHccHHHHHHHHH--hHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45555566654 88999999999999999887777677765 5555555442 11 12678999998887654
Q ss_pred h
Q 021242 295 V 295 (315)
Q Consensus 295 ~ 295 (315)
+
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 3
No 276
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=49.24 E-value=1.5e+02 Score=29.75 Aligned_cols=147 Identities=9% Similarity=0.024 Sum_probs=84.1
Q ss_pred HhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC
Q 021242 45 SEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124 (315)
Q Consensus 45 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 124 (315)
.+.+++|.|++|+++.|..+|..-+.-+-+...+-...++ +....|.+..-+.+ .++-+++.....+..|+.--.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~-~d~I~phv~~G~~D----Tn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL-NDQIFPHVALGFLD----TNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh-cchhHHHHHhhccc----CCHHHHHHHHHHHHHHHhhhc
Confidence 5667899999999999988886655555444333223333 55678888888876 678889888888888775222
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcH-HHHHHHhcCCCcchHHHHHHHHH
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ-PLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~-~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
.+ .+. +.++..+-.+ +. +.+..++.+-+-+|..++.+-. ..++.+++. +..+-++ ++-.+.+..+...++
T Consensus 402 ~~-~Ln--~Ellr~~ar~-q~-d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralk-dpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KR-NLN--GELLRYLARL-QP-DEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALK-DPFVPARKAGVLALA 472 (690)
T ss_pred hh-hhc--HHHHHHHHhh-Cc-cccCcccccceeeecccccccc---hhhhccccchhhhhhhc-CCCCCchhhhhHHHh
Confidence 22 221 2323333332 32 2345566666666666665321 111333332 3444453 455565655555554
Q ss_pred HH
Q 021242 204 QI 205 (315)
Q Consensus 204 ~L 205 (315)
..
T Consensus 473 at 474 (690)
T KOG1243|consen 473 AT 474 (690)
T ss_pred hc
Confidence 43
No 277
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=48.51 E-value=17 Score=19.49 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh
Q 021242 64 FQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 64 ~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~ 98 (315)
+|..|+++|.++. .+.+++.|++.|+
T Consensus 1 VR~~Aa~aLg~ig---------d~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIG---------DPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG----------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---------CHHHHHHHHHHhc
Confidence 4667777777664 3456777776664
No 278
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.02 E-value=1.7e+02 Score=28.92 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=75.1
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
|++..|++.--+ ++++++++.|.-+|.-.|..+. ..++..+++|..+.+.-++....-+|.--|. ..+-+
T Consensus 551 ~vv~~lLh~avs-D~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiaca-g~G~~ 620 (926)
T COG5116 551 GVVSTLLHYAVS-DGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACA-GTGDK 620 (926)
T ss_pred hhHhhhheeecc-cCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhc-CCccH
Confidence 456666666222 4677888888888887776442 3455667777533334444333333432222 11111
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLK 292 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~ 292 (315)
. ++..|=.++.+. ..-+++.|+-++..+.....++.-..+ .+...++..++... ....-+--+-+-+
T Consensus 621 ~-----a~diL~~L~~D~---~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v----~~I~k~f~~vI~~Khe~glaklGA~laq 688 (926)
T COG5116 621 V-----ATDILEALMYDT---NDFVRQSAMIAVGMILMQCNPELNPNV----KRIIKKFNRVIVDKHESGLAKLGAVLAQ 688 (926)
T ss_pred H-----HHHHHHHHhhCc---HHHHHHHHHHHHHHHHhhcCcccChhH----HHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 1 123333345442 667888888777777653333321222 45667777766653 2223333333455
Q ss_pred HHhhCCCCC
Q 021242 293 ILVDDGNMN 301 (315)
Q Consensus 293 ~l~~~~~~~ 301 (315)
-+.+.+-.|
T Consensus 689 Gi~~aGGRN 697 (926)
T COG5116 689 GISEAGGRN 697 (926)
T ss_pred hhhhcCCce
Confidence 565543333
No 279
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=47.63 E-value=1.4e+02 Score=23.46 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHH-HHHHHhh---CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADG-IADVAQN---GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~-L~~ll~~---~~~~~k~~A~~~L~~l~~ 296 (315)
+..+-+-|..+ .++.++..|+.+|-.+....+.....++.. .+++.. |+.++.. .+..||.+...+++..+.
T Consensus 40 ~ralkkRl~~~--~n~~v~l~aL~LLe~~vkNCG~~fh~eias--k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGN--KNHKEVMLTLTVLETCVKNCGHRFHVLVAK--KDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccC--CCHHHHHHHHHHHHHHHHHccHHHHHHHHH--HHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45555555532 267788889999888888666666678876 788887 8888863 246899999998887765
No 280
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.56 E-value=1.9e+02 Score=25.27 Aligned_cols=221 Identities=20% Similarity=0.146 Sum_probs=123.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
.|=..|.+.++..|.+|+..|......-+... ....-+..|++++.+ .|......++..+..|..... + ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~---~-~~ 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN---F-SP 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC---C-Ch
Confidence 45567888999999999999998876644322 222236778887754 455555555666656553222 0 11
Q ss_pred CchHHHHHH-HhcCCCC-CCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 88 GLLDAISHV-LRHHSTS-TSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 88 ~~i~~L~~l-L~~~~~~-~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
+....+++. .++-... -....|..+-..+..|.... +.-..++ .+++..+++.+.- ..||.....+...+..+.
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~g-EkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDG-EKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence 112222222 2210000 12234556666666665432 1122222 3677788888764 468888888888887776
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHh--------cCCCc--ch-HHHHHHHHHH-HhcChhhHHHHHhcCCHHHHHHHhhcCC
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVV--------NGGRA--GI-VEDASAVIAQ-IAGCEESVDEFKKCCGIGVLVDLLDLGT 232 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~--------~~~~~--~~-~~~a~~~L~~-L~~~~~~~~~i~~~~~i~~Lv~ll~~~~ 232 (315)
..-+. ......+.+.+. ..++. .+ .+.--..|++ ++..+ .+ ..-.+|.|++-|.+.
T Consensus 153 ~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~f-a~~~~p~LleKL~s~- 220 (262)
T PF14500_consen 153 QEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LF-APFAFPLLLEKLDST- 220 (262)
T ss_pred Hhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hh-HHHHHHHHHHHHcCC-
Confidence 63331 233334444441 11222 22 3443334444 34433 22 223589999999875
Q ss_pred CCChhHHHHHHHHHHHHhccCC
Q 021242 233 GSGHRVKENAVSALLNLVNFGG 254 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~ 254 (315)
+..+|..++.+|...+..++
T Consensus 221 --~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 221 --SPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred --CcHHHHHHHHHHHHHHHHCC
Confidence 77899999999988776554
No 281
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.46 E-value=84 Score=25.95 Aligned_cols=70 Identities=13% Similarity=-0.000 Sum_probs=49.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLS 76 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la 76 (315)
++|-+++-|....+.-+.-|...+..+.......+-.=+=...|+++-.-|.+.++++...++.+|..|.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3455666666666667778888888887662222222223677888888888999999999999998884
No 282
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=47.37 E-value=1.2e+02 Score=22.58 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=49.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHc------CCCHHHHHHHHHHHHh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILY------SSSHAFQENAAATLLN 74 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~~ 74 (315)
+..+..|-..|.++++..+..|+..|-.+.++. +.....+.....+..++++.. ..+..+++.+...+..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 345667777888899999999999999998775 345667777776666665421 1245688888777654
No 283
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=46.72 E-value=1.4e+02 Score=23.38 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=48.6
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-C-hhhHHHHHhcCCHHH-HHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-C-EESVDEFKKCCGIGV-LVDLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 177 g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~-~~~~~~i~~~~~i~~-Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.++..+.+-|.+++++.+.-.|+.+|-.+.. + ..-..++...+.+.. |++++......+..++...+..+...+..
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 3445566666433456666677877777765 3 344556666667876 88988742112457888888888777643
No 284
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=44.55 E-value=37 Score=30.31 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=42.1
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhccC---------------CCcHHHHHhhCCcHHHHHHHh
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY---------------PLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~---------------~~~~~~i~~~g~v~~L~~lL~ 187 (315)
..++..++.-|. .++...+..|+++|..++.. ..|...+.+.|+++.+..+|.
T Consensus 59 ~~~i~~ll~~L~--~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLE--SSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhcc--ccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 356788888888 45777888999999999874 236667778999999999985
No 285
>PLN03205 ATR interacting protein; Provisional
Probab=43.65 E-value=1.1e+02 Score=28.54 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=62.7
Q ss_pred cHHHHHHHhhccCCChHHHHHHHHHHHHhcc---CCCcHHHHHhhCCcHHHHHHHhc----CCCcchHHHHHHHHHHHh-
Q 021242 135 IIHSLIEIIKTRNSPLRSVKDALKALFGIAL---YPLNRYQVIALGGVQPLFSLVVN----GGRAGIVEDASAVIAQIA- 206 (315)
Q Consensus 135 ~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~---~~~~~~~i~~~g~v~~L~~lL~~----~~~~~~~~~a~~~L~~L~- 206 (315)
++++|+++.. -++..++..+++.|+.+-. +++.|...-=.--+-.|++++.+ +.+..++-.|+.++-.+.
T Consensus 324 LlEaLLdLC~--v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 324 LVEPLLDLCK--AETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHh--cCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 4667777766 3456666777777776554 23333222111223345555532 233445556666665553
Q ss_pred -cCh-hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 207 -GCE-ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 207 -~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
+++ ..|+.|.....+..+-++|+.. ..-.+|.+++..|+-|-
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkE--aGl~VqKealhLLfLLL 445 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKE--GGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHh--ccchhhHHHHHHHHHHH
Confidence 332 3466665555678888888753 25677778777666553
No 286
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.40 E-value=1.8e+02 Score=28.74 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHhCCCCHHHHHHHHHHHH-HHhccCchhhHHHHhCCCHHHHHHH-HcCCCHHHHHHHHHHHHhcCccc
Q 021242 12 VTKLGSVSEQTRAEALAELR-LLSKHDAEIRPMISEAGSIPYLAEI-LYSSSHAFQENAAATLLNLSITS 79 (315)
Q Consensus 12 v~~L~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~la~~~ 79 (315)
-+++.+.++-.|..++..+. .+++.. ..|++..|+.. .++.+.+++++|+-+|.-.++.+
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D 583 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD 583 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecC
Confidence 34445555566666665554 233321 23455555555 44455666666666665544443
No 287
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.16 E-value=40 Score=25.41 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=31.8
Q ss_pred CcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhc
Q 021242 178 GVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKC 218 (315)
Q Consensus 178 ~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 218 (315)
+++.|++.|. +++..+...|+.+|...|..+...+.++..
T Consensus 9 ~i~lLv~QL~-D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLY-DPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 4678888886 678889999999999998877666666543
No 288
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.99 E-value=89 Score=23.51 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=34.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEA 47 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 47 (315)
+-.|+-||..|..+++++...|+..|...+.++ .+.+.++..
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 346888999999999999999999999999775 555555553
No 289
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=42.02 E-value=50 Score=21.62 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=29.2
Q ss_pred HHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
+|.-||.....|..+.+.|+-+.+-.+-....++.+.+.+-.+...|-
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLi 48 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILI 48 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 356678888888888777766655555443345555555544444443
No 290
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.41 E-value=4.5e+02 Score=27.70 Aligned_cols=192 Identities=11% Similarity=0.121 Sum_probs=100.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccc-h-hhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSR-D-SLM 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~-~-~~i 84 (315)
++.....++++.--.|.+|++.+..++..+=.....+ ..+++.....|. +.+-.++-.|+-+|.-+-.+.. . ..+
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 3444555677777899999999999984432222222 234566666676 6666788889999987766653 2 222
Q ss_pred --hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc----CCChHHHHHHH
Q 021242 85 --STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR----NSPLRSVKDAL 157 (315)
Q Consensus 85 --~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~~~~~a~ 157 (315)
.-++.++.|+++.+.. ++.++....=..+...+. ..+...-+.+ .+.....+++... .++.+-...|.
T Consensus 542 ~~hvp~~mq~lL~L~ne~---End~Lt~vme~iV~~fseElsPfA~eL~q--~La~~F~k~l~~~~~~~~~~ddk~iaA~ 616 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEV---ENDDLTNVMEKIVCKFSEELSPFAVELCQ--NLAETFLKVLQTSEDEDESDDDKAIAAS 616 (1010)
T ss_pred hhhhhHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHhhchhHHHHHH--HHHHHHHHHHhccCCCCccchHHHHHHH
Confidence 1233455566666541 344444333344555552 2333333333 3355666666631 11222223344
Q ss_pred HHHHHhcc---CCCcHHHHHh--hCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 158 KALFGIAL---YPLNRYQVIA--LGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 158 ~aL~~Ls~---~~~~~~~i~~--~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
+.|..+++ +-++...+.+ ...+-+++.++..+.-..+-+.++.++..+.
T Consensus 617 GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 617 GILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 44444432 3344433332 2334444444432323456677777777764
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.08 E-value=1e+02 Score=23.60 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=42.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHh-CCCHHHHHHHHcCCC--------HHHHHHHHHHHH
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISE-AGSIPYLAEILYSSS--------HAFQENAAATLL 73 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~-~g~i~~Lv~lL~~~~--------~~~~~~a~~~L~ 73 (315)
....|...|+..++.++.+++..|..++.... .-+..+.+ ...|..+..+-...| ..+|..|-.++.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 34567788888889999999999999986654 44555555 344555444443222 245655555553
No 292
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=39.40 E-value=2.4e+02 Score=27.14 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=49.4
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCC------------HHHHHHHHHHccCcHHHHHHH-Hh-hC
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGG------------ERAAEEVKEMAMQVADGIADV-AQ-NG 279 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~------------~~~~~~i~~~~~g~~~~L~~l-l~-~~ 279 (315)
.+.+.+.|+.|+.+|... .+...+.+|+.+|..|.+-+. +...++++. ...+..|++. +. .+
T Consensus 57 wL~~q~LI~~Li~~L~p~--~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S--~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 57 WLAEQNLIPRLIDLLSPS--YSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS--EETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHhCHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC--hHHHHHHHHHHhcCCC
Confidence 334566799999999843 578899999988887754321 234566665 6678888754 43 33
Q ss_pred CHHHHHHHHHHHHHHhhC
Q 021242 280 SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 ~~~~k~~A~~~L~~l~~~ 297 (315)
+..+--...-++..++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 333333333355555544
No 293
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.39 E-value=2.2e+02 Score=23.49 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=68.3
Q ss_pred hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh-hHHHHHhc--------------C-CH----HHHHHHhhcCCCCC
Q 021242 176 LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE-SVDEFKKC--------------C-GI----GVLVDLLDLGTGSG 235 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~--------------~-~i----~~Lv~ll~~~~~~~ 235 (315)
...-+.|+..+..|++..++..|+.+|..|-.... .-....+. | .| ..|+..|+.. .+
T Consensus 38 ~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E--~~ 115 (182)
T PF13251_consen 38 RPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE--KS 115 (182)
T ss_pred CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--cc
Confidence 45666778777778888999999988888743221 11111100 1 01 3344445543 35
Q ss_pred hhHHHHHHHHHHHHhccCC-HHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 236 HRVKENAVSALLNLVNFGG-ERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~~-~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
..+.-+.+.+|..+..... ++....++ ..++..+..++.+.|+.++-.+...+..+..
T Consensus 116 ~~~l~q~lK~la~Lv~~tPY~rL~~~ll---~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 116 PPVLTQLLKCLAVLVQATPYHRLPPGLL---TEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred cHHHHHHHHHHHHHHccCChhhcCHhHH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 5666677788887775432 12222222 2244555567778888998888888877754
No 294
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.19 E-value=1.4e+02 Score=27.07 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhC--CcHHHHHHHhcCCC--cchHHHHHHHHHHHhcChhhHHHH
Q 021242 153 VKDALKALFGIALYPLNRYQVIALG--GVQPLFSLVVNGGR--AGIVEDASAVIAQIAGCEESVDEF 215 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g--~v~~L~~lL~~~~~--~~~~~~a~~~L~~L~~~~~~~~~i 215 (315)
+..|+..|..+...+....+++..+ .+..|++++..+.. ..++..|+.+|..++....-...+
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 3455555555555666777888776 99999999963222 245677888999888754333333
No 295
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=38.14 E-value=1.8e+02 Score=22.05 Aligned_cols=99 Identities=26% Similarity=0.333 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHH
Q 021242 193 GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGI 272 (315)
Q Consensus 193 ~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L 272 (315)
+.....+.-|+.++........|+ ..+.+-|......+......|+.+|..|...++++....+.. ....++.|
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I~-----~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~-~~~~I~~l 91 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEIM-----DVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRD-HIDIIREL 91 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHHH-----HHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHH-THHHHHGG
T ss_pred CcCHHHHHHHHHHHhccccHHHHH-----HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHhhc
Confidence 344555666666666555555554 455666621212467888899999999999998777677754 24556666
Q ss_pred HHHHh--h-CC---HHHHHHHHHHHHHHhhC
Q 021242 273 ADVAQ--N-GS---AKGKTKAVALLKILVDD 297 (315)
Q Consensus 273 ~~ll~--~-~~---~~~k~~A~~~L~~l~~~ 297 (315)
..+-- . +. -.+|+.|..++..|.++
T Consensus 92 ~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 92 QDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp GG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred ceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 54422 1 22 25999999999988653
No 296
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.92 E-value=3.3e+02 Score=27.74 Aligned_cols=143 Identities=16% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHh-ccCc----hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc----
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLS-KHDA----EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS---- 79 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~-~~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~---- 79 (315)
|-|-+-|+..+.++|..|+..+.++- -.+| +....+.+.. ...|.++|+++.|.+|-.|+.=+......-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 33444556778899999999888774 2222 3345555554 678899999999999877776553332110
Q ss_pred chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 80 RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 80 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
++.++. ..+..++.-+... ...+++......|..+..++..-..+.. + +|.|-..+. +.+..++..+.-.
T Consensus 256 P~~i~~--~ll~kI~d~~a~d---t~s~VR~svf~gl~~~l~np~sh~~le~--~-Lpal~~~l~--D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 256 PPTILI--DLLKKITDELAFD---TSSDVRCSVFKGLPMILDNPLSHPLLEQ--L-LPALRYSLH--DNSEKVRVAFVDM 325 (1005)
T ss_pred CHHHHH--HHHHHHHHHhhhc---cchheehhHhcCcHHHHcCccchhHHHH--H-HHhcchhhh--ccchhHHHHHHHH
Confidence 111111 1223333333321 2335555555556666555554444432 4 666666666 3455565555544
Q ss_pred HHH
Q 021242 160 LFG 162 (315)
Q Consensus 160 L~~ 162 (315)
|..
T Consensus 326 ll~ 328 (1005)
T KOG1949|consen 326 LLK 328 (1005)
T ss_pred HHH
Confidence 443
No 297
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=36.95 E-value=1.2e+02 Score=23.10 Aligned_cols=102 Identities=24% Similarity=0.210 Sum_probs=61.6
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc--------hhh-H----HHHhCCCHHHHHHHH----cCCC----HHH
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA--------EIR-P----MISEAGSIPYLAEIL----YSSS----HAF 64 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~--------~~~-~----~i~~~g~i~~Lv~lL----~~~~----~~~ 64 (315)
.-++.+++.++++ +......+..|..+..+-. ..| . .+.+. .+.++.++ .... .+.
T Consensus 26 ~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~--~~~i~~~l~~~l~~~~~~~~~~~ 102 (148)
T PF08389_consen 26 DFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN--SPDILEILSQILSQSSSEANEEL 102 (148)
T ss_dssp THHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCHCCHHHH
T ss_pred hHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccHHHH
Confidence 4577888888774 5556566666655542211 112 2 23332 55555555 3222 678
Q ss_pred HHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 021242 65 QENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 65 ~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L 116 (315)
...++.++.....--+...+.+.+.++.+.++|.++ +.+..|+.+|
T Consensus 103 ~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~------~~~~~A~~cl 148 (148)
T PF08389_consen 103 VKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP------ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH------HHHHHHHHhC
Confidence 889999998877755555555777999999999752 3366666654
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.06 E-value=1.7e+02 Score=30.59 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhC--------CCHHHHHHHHcC----CCHHHHHHHHHHHHhcCcccc-h--hhh-
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEA--------GSIPYLAEILYS----SSHAFQENAAATLLNLSITSR-D--SLM- 84 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~--------g~i~~Lv~lL~~----~~~~~~~~a~~~L~~la~~~~-~--~~i- 84 (315)
+....|+..|.-+..- |..+..++.. .+|..++.--.. .|++++..|+.+|.||...++ . ..+
T Consensus 624 d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~ 702 (1516)
T KOG1832|consen 624 DLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIV 702 (1516)
T ss_pred HHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhh
Confidence 5555666666655432 4455444431 133333333322 278999999999999988763 2 111
Q ss_pred --hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc---CCChHHHHHHHHH
Q 021242 85 --STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR---NSPLRSVKDALKA 159 (315)
Q Consensus 85 --~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~a 159 (315)
....+-+. ..+..+ ...+..++..+-. ...++.+.| |..|+++|+-. ..-..++.-|+++
T Consensus 703 ~v~S~~g~~r--~~l~~~---~ks~~le~~l~~m---------w~~Vr~ndG-IkiLl~Ll~~k~P~t~aD~IRalAc~~ 767 (1516)
T KOG1832|consen 703 AVGSQSGDRR--IFLGAG---TKSAKLEQVLRQM---------WEAVRGNDG-IKILLKLLQYKNPPTTADCIRALACRV 767 (1516)
T ss_pred hccccCCCcc--ccccCC---CchHHHHHHHHHH---------HHHHhcCcc-HHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 11111111 112210 1111111222222 223455567 99999999832 2224677889999
Q ss_pred HHHhccCCCcHHHHHhhC
Q 021242 160 LFGIALYPLNRYQVIALG 177 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~g 177 (315)
|..|++++..+..+-+.-
T Consensus 768 L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 768 LLGLARDDTVRQILTKLP 785 (1516)
T ss_pred HhccccCcHHHHHHHhCc
Confidence 999999998887665443
No 299
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=35.06 E-value=58 Score=19.94 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=21.9
Q ss_pred cCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 266 MQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 266 ~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
.|+-..|-.++..+++..+..|..+|..+
T Consensus 16 e~Ar~lL~evl~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQEARALLAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 34455555778889999999999998753
No 300
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.29 E-value=3.5e+02 Score=26.05 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=44.5
Q ss_pred HhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc---C-----------hhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 174 IALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG---C-----------EESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 174 ~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~---~-----------~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
.+.+.++.|+.+|....+..+...|+.+|+.+-. . ..--..+.+...|..|++.+-.+ .....-
T Consensus 59 ~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~--~~~s~l 136 (475)
T PF04499_consen 59 AEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNS--QGGSSL 136 (475)
T ss_pred HHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcC--CCcchH
Confidence 3579999999999532334566667777776532 1 11223344455678888865532 124444
Q ss_pred HHHHHHHHHHhc
Q 021242 240 ENAVSALLNLVN 251 (315)
Q Consensus 240 ~~a~~~L~~l~~ 251 (315)
-++++++..+-+
T Consensus 137 vn~v~IlieLIR 148 (475)
T PF04499_consen 137 VNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHHH
Confidence 566666666554
No 301
>PRK14707 hypothetical protein; Provisional
Probab=33.66 E-value=8.5e+02 Score=28.62 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=138.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHH-HhcCcccc-hhhhhhcCchHHH
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL-YSSSHAFQENAAATL-LNLSITSR-DSLMSTRGLLDAI 93 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L-~~la~~~~-~~~i~~~~~i~~L 93 (315)
.++......|+..|....-++..-+..+ +...+-..+.-| +..+..+..+|+..| -.++.+.. .+.+ ++-.+.-.
T Consensus 217 Wp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vana 294 (2710)
T PRK14707 217 WPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQA 294 (2710)
T ss_pred CCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHH
Confidence 4433334456666665544434334443 333455555555 556666666777666 44554443 2333 33334444
Q ss_pred HHHHhcCCCCCCHHH-HHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHH
Q 021242 94 SHVLRHHSTSTSSAA-VQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQ 172 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~-~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 172 (315)
+.-|..- ++..+ +..+...-..|...++-+..+-. .+ +...+.-|++=.++..+...|...-..++.+++.+..
T Consensus 295 lNalSKw---pd~~vc~~Aa~~la~rl~~d~~l~~~~~~-~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~ 369 (2710)
T PRK14707 295 LNALSKW---ADLPVCAEAAIALAERLADDPELCKALNA-RG-LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD 369 (2710)
T ss_pred HhhhhcC---CCchHHHHHHHHHHHHHhccHhhhhccch-HH-HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc
Confidence 4444321 23333 33444444566665555555543 35 5666666664334445544455555577777777766
Q ss_pred HHhhCCcHHHHHHHhcCCCcchHHHHHHHHH-HHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 173 VIALGGVQPLFSLVVNGGRAGIVEDASAVIA-QIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 173 i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~-~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
+- .-++...+.-|..=|+...+..+...|. .|..+++-++.+ +..+|..++..|..= ++.+.+...+...-..+++
T Consensus 370 l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKW-Pd~~~C~~aa~~lA~~la~ 446 (2710)
T PRK14707 370 LE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKW-PDLPICGQAVSALAGRLAH 446 (2710)
T ss_pred cc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcC-CcchhHHHHHHHHHHHHhc
Confidence 53 4445556666643367777766665555 456677778877 455677777766532 1244444444333344433
Q ss_pred cCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHHHHHhhCCC
Q 021242 252 FGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 252 ~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l~~~~~ 299 (315)
+. +.++.+-- .+ +...++-++. ++|..++.|..+...|..+..
T Consensus 447 -d~-~l~~~~~p--~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 447 -DT-ELCKALDP--IN-VTQALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred -cH-HHHhhcCh--HH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 32 33333321 23 3344444444 366666666666666665433
No 302
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.59 E-value=1.2e+02 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=27.4
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 48 GSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 48 g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
=++|+++.++.+.++.++..++.+|..+..+-+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 458999999988889999999999988876543
No 303
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=32.90 E-value=2.3e+02 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
-.|+.++..+...+..-..+...+ .+..|++++..++....+++..|+.+|..++...
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 335566666666667777777776 6899999999875567889999999999998743
No 304
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.40 E-value=3.9e+02 Score=24.39 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHHhcCcccchhh-hhhcCchHHHHHHHhcCCC------CCCHHHHHHHHHH
Q 021242 50 IPYLAEILYSS-------SHAFQENAAATLLNLSITSRDSL-MSTRGLLDAISHVLRHHST------STSSAAVQSSAAT 115 (315)
Q Consensus 50 i~~Lv~lL~~~-------~~~~~~~a~~~L~~la~~~~~~~-i~~~~~i~~L~~lL~~~~~------~~~~~~~~~a~~~ 115 (315)
+|-++.++... +-.........+..|..++.-.+ ..-+..+|.++..+-.... ..+-.+|..|+.+
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 45555555331 34455556666666666654111 1122267777776632211 1234678888888
Q ss_pred HHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 116 LHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 116 L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
|..++. ....-..+. .-++..|.+.+.++.......-.|+..|..|
T Consensus 292 l~~i~~~f~~~y~~l~--~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 292 LAQICRKFSTSYNTLQ--PRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHcCCCCCcHH--HHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 888884 222211122 1334456665553222222234455555554
No 305
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.34 E-value=5.5e+02 Score=26.02 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=84.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
+..|..|+.+|.+++......+-..+......+.+. -.+..||+..-+... ..++.+|..+- ++.
T Consensus 3 ~~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s---~~~~~il~~~~--~P~--- 67 (668)
T PF04388_consen 3 QASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNS---QRALEILVGVQ--EPH--- 67 (668)
T ss_pred cccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCc---HHHHHHHHhcC--Ccc---
Confidence 467889999999999877777777777665443222 125566666433221 23444554331 110
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.......|-.++.. +..+..+...|..+... +.--..|.+. .+++-|++.|.. +.++.+...|+.+|.-|
T Consensus 68 -~K~~~~~l~~~~~~------~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t-~Lf~~LLk~L~~-D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 68 -DKHLFDKLNDYFVK------PSYRLQALTLLGHFVRSQPPWLYKILQT-PLFKSLLKCLQF-DTSITVVSSALLVLIML 138 (668)
T ss_pred -HHHHHHHHHHHHcC------chhHHHHHHHHHHHHhcCCchHHHHhcC-hhHHHHHHHHhh-cccHHHHHHHHHHHHHH
Confidence 11234555566654 36677888888888864 4444556654 668999998885 35667777788877766
Q ss_pred cc
Q 021242 164 AL 165 (315)
Q Consensus 164 s~ 165 (315)
-.
T Consensus 139 LP 140 (668)
T PF04388_consen 139 LP 140 (668)
T ss_pred hc
Confidence 53
No 306
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=31.65 E-value=1.4e+02 Score=23.79 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=53.6
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHH-HhhccCCChHHHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIE-IIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~-ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+....+.|++.+.+ .++.+-..+++++..|... .+..+ .+.+-+++.++. ++.++..+..-+..++.++..
T Consensus 70 lk~~l~~~Ll~~~~~----~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 70 LKDDLCPALLKNLSS----SDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 366678888888876 4577777888888887732 22222 233445666666 666432234566779999999
Q ss_pred hccCCCcHHHH
Q 021242 163 IALYPLNRYQV 173 (315)
Q Consensus 163 Ls~~~~~~~~i 173 (315)
++.+|.....+
T Consensus 144 l~~~p~~l~~l 154 (168)
T PF12783_consen 144 LCKDPQFLVDL 154 (168)
T ss_pred HHhChhHHHHH
Confidence 99988654433
No 307
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=31.51 E-value=1e+02 Score=25.71 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHH
Q 021242 107 AAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFS 184 (315)
Q Consensus 107 ~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~ 184 (315)
++...+...|..++. +.+|+..+... ++.++..+.. .....-..+..+|..+-. +++....+.+ ..+..++.
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~~~~--~~~~~~~~~~d~l~~i~~dN~~L~~~i~e-~~I~~~i~ 149 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISIFMQ--LQIGYGLGALDVLTEIFRDNPELCESISE-EHIEKFIE 149 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----HHC--CCH-TTHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHHHHH--hhccCCchHHHHHHHHHHCcHHHHHHhhH-HHHHHHHH
Confidence 444577788888884 55666666542 5555554442 111112345566666555 3455555543 34888888
Q ss_pred HHhcCCCcchHHHHHHHHHHHhcC
Q 021242 185 LVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 185 lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
++..++ ....-+..|+.++.+
T Consensus 150 ll~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 150 LLRKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ------------------------
T ss_pred HHHHcC---CChHHHHHHhhhccc
Confidence 886422 223355666666654
No 308
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=31.12 E-value=44 Score=32.14 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..+++.+..+ .++++++++..++.+++-+.. .++..+- ....-..+++++....|++-+.|+..++.+-+
T Consensus 329 ~~~~lk~~~a~--~n~~l~~qa~~~v~~~~~~~~--~r~~~~t-sp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAH--KNPELQRQALLAVGNLAFCLE--NRRILIT-SPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcc--cChHHHHHHHHHHHHheeccc--ccccccC-ChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 45555555544 478999999999999987643 2222221 12334445577777888888888777766643
No 309
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=30.50 E-value=4.8e+02 Score=24.75 Aligned_cols=138 Identities=10% Similarity=0.054 Sum_probs=81.9
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc--------CCChHHHHHHHHHHH
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR--------NSPLRSVKDALKALF 161 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--------~~~~~~~~~a~~aL~ 161 (315)
.+.++.+|.++ ....-+..+..+++-|+.....-.-+-.. ..+..|..+-+-+ ..+..+...++++|+
T Consensus 47 ~e~i~~Vle~~---~p~t~~v~~LetvrILSRdk~~L~~~~~~-q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLc 122 (532)
T KOG4464|consen 47 GERIFEVLENG---EPLTHRVVCLETVRILSRDKDGLEPLTND-QLCQKLLALAELSSNENSLPTVADMHVIMESLKCLC 122 (532)
T ss_pred HHHHHHHHhcC---CCchhhhhHHHHHHHHhccccccccccch-HHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH
Confidence 56677888762 22334457888999999876653333222 2245555544311 123467889999999
Q ss_pred HhccC-CCcHHHHHhhCCcHHHHHHHhcCC---Cc-chHHHHHHHHHHHhc-ChhhHHHH-HhcCCHHHHHHHhhcC
Q 021242 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGG---RA-GIVEDASAVIAQIAG-CEESVDEF-KKCCGIGVLVDLLDLG 231 (315)
Q Consensus 162 ~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~---~~-~~~~~a~~~L~~L~~-~~~~~~~i-~~~~~i~~Lv~ll~~~ 231 (315)
|+..+ +..+....+...+..+.+.+.... .+ .+.---+..|--|+. .+..|..+ .+.+|++-+.+++...
T Consensus 123 Nlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 123 NLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDK 199 (532)
T ss_pred HHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 99984 455566677776666666664211 11 222334555555543 34566655 4567899988888653
No 310
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.16 E-value=76 Score=17.02 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh
Q 021242 63 AFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 63 ~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~ 98 (315)
.+|..|+.+|.++. .+.+++.|++.++
T Consensus 2 ~vR~~aa~aLg~~~---------~~~a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLG---------DEEAVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcC---------CHhHHHHHHHHhc
Confidence 36778888888773 3445666666665
No 311
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=30.04 E-value=1.4e+02 Score=18.43 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=21.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHH
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPM 43 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 43 (315)
.++++|.++++..|.+.+.+|..+.+.+++-.+.
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHh
Confidence 5778888888788888888888888777665443
No 312
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.41 E-value=81 Score=24.15 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHH
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATL 72 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 72 (315)
++....++.++..+..- -....+.+.+.++.+..+|.+ +++++.|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 78899999999999863 455677778899999999944 44577777765
No 313
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=29.32 E-value=1.7e+02 Score=19.16 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 202 IAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 202 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
|-.||....+|+.+.+.|+-+.+=.+-... .++.+++.+-.+..-|-
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E--~d~~V~e~~erlV~iLi 48 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWE--EDEEVQEACERLVQILI 48 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhcc--CCHHHHHHHHHHHHHHh
Confidence 456788899999998877644443333332 36777766655544443
No 314
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=29.01 E-value=44 Score=20.14 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=18.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHH
Q 021242 48 GSIPYLAEILYSSSHAFQENAAATL 72 (315)
Q Consensus 48 g~i~~Lv~lL~~~~~~~~~~a~~~L 72 (315)
.+...+..-+.++++.+|++|+.+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4566667777788889999888753
No 315
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=28.68 E-value=8.2e+02 Score=26.92 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----------cCCCHHHHHHHHHHHHhcCc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----------YSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~la~ 77 (315)
++.|+..+-++..++|..+..+++.+.+.+...-....-....-.++..+ .+....+++.++++|..+..
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~ 158 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK 158 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Q ss_pred ccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 78 TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 78 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
+-....+.. .++.+.++++. +.=+.+.-.+..+.+.-. --.-..+.-.+-+++..+.-+. +.+.+++..|.
T Consensus 159 ~~~~s~~~~--~~~il~q~~~q----~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~--ds~ddv~~~aa 229 (1549)
T KOG0392|consen 159 HMDESLIKE--TLDILLQMLRQ----PNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLE--DSDDDVRSVAA 229 (1549)
T ss_pred hhhhHhhHH--HHHHHHHHHcC----cchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh--hcchHHHHHHH
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcch-HHHHHHHHHHHhcChhhHHHHHh----cCCHHHHHHHhhcCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGI-VEDASAVIAQIAGCEESVDEFKK----CCGIGVLVDLLDLGT 232 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~-~~~a~~~L~~L~~~~~~~~~i~~----~~~i~~Lv~ll~~~~ 232 (315)
.+|.-..+.......---.-.+..+..++..-.+... .......|..++...+.-.-..+ .|-+|.++..+.+.
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~- 308 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT- 308 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH-
Q ss_pred CCChhHHHHHHHHHHHHh
Q 021242 233 GSGHRVKENAVSALLNLV 250 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~ 250 (315)
=..++..++..+..+.
T Consensus 309 --i~sv~~a~l~~l~~ll 324 (1549)
T KOG0392|consen 309 --ISSVRRAALETLAMLL 324 (1549)
T ss_pred --HHHHHHHHHHHHHHHH
No 316
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=28.51 E-value=4.6e+02 Score=27.89 Aligned_cols=132 Identities=10% Similarity=0.006 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc
Q 021242 151 RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~ 230 (315)
.++..+.-+|.+||..++--.+ ..+|.+++-|.-+....++-+..-++..+|.. ..++. ..-||.+..-|.+
T Consensus 946 ~vra~~vvTlakmcLah~~LaK----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~---YTam~-d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS---YTAMT-DRYIPMIAASLCD 1017 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH---HHHHH-HHhhHHHHHHhcC
Confidence 3455677778888774332211 23566776664222223333333333334332 12232 2458888888887
Q ss_pred CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcH-HHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCC
Q 021242 231 GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVA-DGIADVAQNGSAKGKTKAVALLKILVDDGNMN 301 (315)
Q Consensus 231 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~-~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~ 301 (315)
. +.-++.++...|.+|-.. .+++. .|.+ -.++.-+-+.++.++.-|...+..+--.++++
T Consensus 1018 p---~~iVRrqt~ilL~rLLq~-------~~vKw-~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~ 1078 (1529)
T KOG0413|consen 1018 P---SVIVRRQTIILLARLLQF-------GIVKW-NGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPN 1078 (1529)
T ss_pred c---hHHHHHHHHHHHHHHHhh-------hhhhc-chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCcc
Confidence 5 889999999999998653 23431 2332 22223333567889988888877766555554
No 317
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.33 E-value=4.1e+02 Score=23.37 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=36.3
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH--HHHhhCCcHHHHHHH
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY--QVIALGGVQPLFSLV 186 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~--~i~~~g~v~~L~~lL 186 (315)
.-++|+++.+++ +.++..+..++.+|..+...-.... .+.+.|..+.+.+.+
T Consensus 118 ~liiP~iL~llD--D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 118 PLIIPPILNLLD--DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred hHHHhhHHHHhc--CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 356899999999 4588999999999999887433322 244566655544433
No 318
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.41 E-value=6.9e+02 Score=25.66 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=81.5
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 212 (315)
++|..|+++--+ +.+.++++.|.-+|.-++. +|+ ..|..+.+|..+-++-++--++.+|.-.|...-.+
T Consensus 554 kair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 554 KAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhHHHhhccccc-ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 457777877433 4677899999999987665 443 34566777854445667766776776554432222
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC--CHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG--SAKGKTKAVAL 290 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~--~~~~k~~A~~~ 290 (315)
.++ ..|=.++.+. ..-+++-|+-++..+...-.+.....+ .|..+.+..++... +.-+|--|. +
T Consensus 624 eAi------~lLepl~~D~---~~fVRQgAlIa~amIm~Q~t~~~~pkv----~~frk~l~kvI~dKhEd~~aK~GAi-l 689 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDP---VDFVRQGALIALAMIMIQQTEQLCPKV----NGFRKQLEKVINDKHEDGMAKFGAI-L 689 (929)
T ss_pred HHH------HHHhhhhcCh---HHHHHHHHHHHHHHHHHhcccccCchH----HHHHHHHHHHhhhhhhHHHHHHHHH-H
Confidence 222 2222244432 567787777777766543323322333 44566667776654 333333332 3
Q ss_pred HHHHhh--CCCCCCcc
Q 021242 291 LKILVD--DGNMNITM 304 (315)
Q Consensus 291 L~~l~~--~~~~~i~~ 304 (315)
=+-+.+ .+|+-|.+
T Consensus 690 AqGildaGGrNvtisl 705 (929)
T KOG2062|consen 690 AQGILDAGGRNVTISL 705 (929)
T ss_pred HhhhhhcCCceEEEEE
Confidence 444433 45554443
No 319
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=25.32 E-value=3.7e+02 Score=21.85 Aligned_cols=77 Identities=19% Similarity=0.125 Sum_probs=47.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccchh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSRDS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~~~ 82 (315)
+..+|.++.-....+++....+...|..+..-+ ...-+++|+. .++.+|..|+..|.+++.+ .
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~------------~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~---e 102 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLK------------PEQALELLDCNFPDEHVREFAVRCLEKLSDD---E 102 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCC------------HHHHHHHCCCcCCCHHHHHHHHHHHHhCCHH---H
Confidence 445666666666667666667776666664332 3344566654 4677889999888775411 1
Q ss_pred hhhhcCchHHHHHHHhc
Q 021242 83 LMSTRGLLDAISHVLRH 99 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~ 99 (315)
+ ...++-|++.|+.
T Consensus 103 L---~~yL~QLVQaLKy 116 (171)
T cd00872 103 L---LQYLLQLVQVLKY 116 (171)
T ss_pred H---HHHHHHHHHHHHc
Confidence 1 1256777788875
No 320
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.99 E-value=2.9e+02 Score=22.04 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh---------hhh--ccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI---------IGA--KRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~---------i~~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
..++++|.+.-..+..+.-..=+..|..++.....+.. ++. .|==|.+|+++|. +++..+...|+.+
T Consensus 40 ~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~--~~d~~lA~~Aa~a 117 (154)
T PF11791_consen 40 AFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLK--SDDEELAEEAAEA 117 (154)
T ss_dssp HHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG----G-TTTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHc--CCcHHHHHHHHHH
Confidence 35667776433234455555556677777754433221 111 1113789999997 4477788889999
Q ss_pred HHHhcc
Q 021242 160 LFGIAL 165 (315)
Q Consensus 160 L~~Ls~ 165 (315)
|.+--.
T Consensus 118 Lk~TlL 123 (154)
T PF11791_consen 118 LKNTLL 123 (154)
T ss_dssp HHT--T
T ss_pred HHhhHH
Confidence 987544
No 321
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.48 E-value=1.9e+02 Score=27.99 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhcCcccc-hh-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 021242 59 SSSHAFQENAAATLLNLSITSR-DS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119 (315)
Q Consensus 59 ~~~~~~~~~a~~~L~~la~~~~-~~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~L 119 (315)
..++.+++.|..++.+++.+.+ ++ .+-.+..-..++.++.. ..+++-+.++.++..+
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~----~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVT----PEPRVNKAAARALAIL 397 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcc----cccccchhhhHHHHHh
Confidence 4678899999999999999875 33 34466667777888865 3344444455554443
No 322
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.12 E-value=3e+02 Score=25.76 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=59.1
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~ 77 (315)
.-+..+..+...|.+.++.+...|+..+-.++..- ...|..+-...+...|..++. +..+.+.+.-..++.+.+.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999888887653 235677778899999999998 5667787777667766654
No 323
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=23.77 E-value=4.2e+02 Score=27.06 Aligned_cols=106 Identities=17% Similarity=0.072 Sum_probs=65.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hhhhhh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DSLMST 86 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~~i~~ 86 (315)
.+...+.++++..-...+..+..+.+-..-..+. +..-.++-..-.+..-..+......+|..++.-+. +.+..+
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 3444555666666666666666665432111111 22223333333333334566777788888887654 456678
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
.+....++.++-+ ++.++.+.|...|.....
T Consensus 523 ~~~~~~i~s~lfs----p~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 523 PDAAQAIWSLLFS----PDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred cchhhHHHhheeC----CChHHHHHHHHHHHHHhc
Confidence 8999999999987 678899999888888664
No 324
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=2.1e+02 Score=29.98 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=63.3
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHh---ccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLS---KHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--- 80 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--- 80 (315)
-..+...+|++.+..+|.+|+..+..-. ...++.--.+ -+-..|.++..+...++-+...|..++.+++....
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPl-vhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPL-VHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHH-HHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 3456778889999999999999987432 2212211222 25669999999999999999999999999987643
Q ss_pred -hhhhhhcCchHHHHHHHh
Q 021242 81 -DSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~ 98 (315)
.+. -.+.+|.+-.+++
T Consensus 883 ~sR~--l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 883 ASRF--LEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHH--HHHHHHHHHHHHH
Confidence 233 3346777776665
No 325
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.52 E-value=2.5e+02 Score=26.97 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=57.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHH--HhcCccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYSS--SHAFQENAAATL--LNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L--~~la~~~ 79 (315)
+..+..|-+.+.+.++.++.-|+..|-.+++.-.. -...|++.++++-+|.+.+.. +..+|+.++..| |.-++..
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 45667777888888889999999988888876433 345788899999999999764 567999999988 5555544
No 326
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=23.40 E-value=5.7e+02 Score=23.25 Aligned_cols=200 Identities=13% Similarity=0.065 Sum_probs=129.5
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-Cch----hhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYR----PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~----~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
+.++|....|++.+.. ..-+.+..++.+..+|-..+ ..+ ..+... .+.+..+++.....+++...+-.
T Consensus 75 f~~~~~l~~lI~~l~~----l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~---~e~~~~lv~~~~~~~~iaL~cg~ 147 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPK----LEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN---PEILDNLVKGYENTPEIALTCGN 147 (342)
T ss_pred HHhCCchHHHHHhhhc----ccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC---HHHHHHHHhhhccchHHHHHHHH
Confidence 5689999999999986 67788888888888887533 222 233332 23333333321113566556666
Q ss_pred HHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcC---CHHH-HHHHhhcCCC
Q 021242 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCC---GIGV-LVDLLDLGTG 233 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~---~i~~-Lv~ll~~~~~ 233 (315)
-|....+++...+.+....-.......+. .|...+...|..+...+-. +.....++.... ..+. --.++.++
T Consensus 148 mlrEcirhe~LakiiL~s~~~~~FF~~vq-~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-- 224 (342)
T KOG1566|consen 148 MLRECIRHEFLAKIILESTNFEKFFLYVQ-LPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-- 224 (342)
T ss_pred HHHHHHhhHHHHHHHHcchhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc--
Confidence 67776666666677777777777777775 4666777888888888744 555566665443 2244 33466665
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+--.+.++...|..+-...+.. ..|.++- ...+..+..+++..+...+-.|=...+.+..
T Consensus 225 -Nyvtkrqs~kllg~llldr~N~--~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 225 -NYVTKRQSLKLLGELLLDRSNS--AVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred -ceehHHHHHHhHHHHHhCCCcH--HHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 7778888888888887643322 3444322 2567778888888888888887776666643
No 327
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.28 E-value=1.2e+02 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSK 35 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~ 35 (315)
..+..+|.++++++|..|+.+|..+-.
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 356788999999999999999999853
No 328
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=22.43 E-value=1.6e+02 Score=31.04 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=65.5
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..+|-|++.|.-. ...+|-+-+.++..++.+- .+-..-.||.+-..|.++++-++++++..|.+|-..+-.++
T Consensus 967 Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw 1041 (1529)
T KOG0413|consen 967 KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKW 1041 (1529)
T ss_pred HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhc
Confidence 46788888888644 4567777777777776442 22234568999999998889999999999888754432111
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
= ..=.+..+..++.. +++++..|-..+..+.
T Consensus 1042 ~-G~Lf~Rf~l~l~D~-----~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1042 N-GELFIRFMLALLDA-----NEDIRNDAKFYISEVL 1072 (1529)
T ss_pred c-hhhHHHHHHHHccc-----CHHHHHHHHHHHHHHH
Confidence 0 11135566666653 4566555544444443
No 329
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=21.42 E-value=1.8e+02 Score=23.16 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhcChhhHHHHHhcC-CHHHHHHHhhc
Q 021242 194 IVEDASAVIAQIAGCEESVDEFKKCC-GIGVLVDLLDL 230 (315)
Q Consensus 194 ~~~~a~~~L~~L~~~~~~~~~i~~~~-~i~~Lv~ll~~ 230 (315)
++-.|+.+|...+..+.|...+..+. +|++|+..|..
T Consensus 110 lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 110 LRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 34568889999999999999998777 69999998863
No 330
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.76 E-value=4.9e+02 Score=24.09 Aligned_cols=73 Identities=23% Similarity=0.165 Sum_probs=54.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
..+..++.++...+...+..++..+.......+-++..+.+. -+.+..|+....+.++..++.+|.++-.-+.
T Consensus 7 ~~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~--~~l~~~Ll~d~s~~vrr~lA~aL~~~~~~Pr 79 (364)
T COG5330 7 STDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQF--EDLARPLLDDSSEEVRRELAAALAQCETAPR 79 (364)
T ss_pred hhHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHH--HHHHHHHhhCccHHHHHHHHHHHHhCCcCCH
Confidence 467789999999988889888888887765544356555542 3556677777888999999999988765543
No 331
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.62 E-value=4.6e+02 Score=21.17 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=42.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccchhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
+++.++.-....+++....+...|..+..- .+...+++|+. .++.+|..|+..|.+++ +..+
T Consensus 47 aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i------------~~~~aLeLL~~~f~~~~VR~yAV~~L~~~s---d~eL- 110 (166)
T cd00870 47 ALTKFLKSVNWSDEQEVKQALELMPKWAKI------------DIEDALELLSPYFTNPVVRKYAVSRLKLAS---DEEL- 110 (166)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhcCCCC------------CHHHHHHHcCccCCCHHHHHHHHHHHHhCC---HHHH-
Confidence 344444444444555555555555554322 13444566654 46778899999987754 1111
Q ss_pred hhcCchHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRH 99 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~ 99 (315)
...++-|++.|+.
T Consensus 111 --~~yL~QLVQaLKy 123 (166)
T cd00870 111 --LLYLLQLVQALKY 123 (166)
T ss_pred --HHHHHHHHHHHHh
Confidence 1257778888875
No 332
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.05 E-value=4.6e+02 Score=29.25 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCCHHHHHHHH----cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC
Q 021242 47 AGSIPYLAEIL----YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV 122 (315)
Q Consensus 47 ~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~ 122 (315)
.+.++.++.+. .+.++.+++-+......+-..-+ .. .+...+..|+..+-+ ++..-...|..+|..|+..
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~-~qqeVv~~Lvthi~s----g~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SY-CQQEVVGALVTHIGS----GNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-ch-hHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhc
Confidence 34455555544 45677777666665544333222 11 234467888888755 3444455788999998853
Q ss_pred CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 123 DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 123 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+...+.....++..+++.+.. -++.=.+.....|..|+.+
T Consensus 504 --~~~~l~~fa~~l~giLD~l~~--Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 504 --NPSELQPFATFLKGILDYLDN--LSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp ---HHHHHHTHHHHHGGGGGGGG----HHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhcC
Confidence 233333333445555666552 2333345567777777753
Done!