Query 021242
Match_columns 315
No_of_seqs 133 out of 1422
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:49:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 2.2E-35 7.5E-40 268.4 21.9 271 21-304 47-342 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 1.9E-34 6.6E-39 271.9 23.9 284 6-298 2-362 (457)
3 3nmz_A APC variant protein; pr 100.0 2E-34 7E-39 269.6 20.6 281 5-298 133-452 (458)
4 3l6x_A Catenin delta-1; cateni 100.0 1.1E-33 3.8E-38 270.5 23.3 289 4-300 46-388 (584)
5 3nmz_A APC variant protein; pr 100.0 6.6E-33 2.3E-37 259.4 19.5 289 4-296 68-408 (458)
6 3ul1_B Importin subunit alpha- 100.0 8E-32 2.7E-36 257.4 27.0 286 4-298 98-389 (510)
7 1xm9_A Plakophilin 1; armadill 100.0 1.3E-31 4.5E-36 252.5 26.7 291 4-300 42-453 (457)
8 3tpo_A Importin subunit alpha- 100.0 4.7E-31 1.6E-35 253.1 28.8 286 4-298 117-408 (529)
9 3l6x_A Catenin delta-1; cateni 100.0 2.7E-31 9.3E-36 254.0 26.4 288 4-297 88-477 (584)
10 3now_A UNC-45 protein, SD10334 100.0 5E-31 1.7E-35 260.0 25.8 282 5-297 420-738 (810)
11 3tpo_A Importin subunit alpha- 100.0 2.6E-30 8.8E-35 248.0 27.9 279 4-295 160-448 (529)
12 3now_A UNC-45 protein, SD10334 100.0 5.1E-31 1.8E-35 259.9 22.3 283 5-301 494-787 (810)
13 3ul1_B Importin subunit alpha- 100.0 4.1E-30 1.4E-34 245.6 26.5 279 4-295 141-429 (510)
14 3nmw_A APC variant protein; AR 100.0 8.6E-31 2.9E-35 238.2 17.1 245 4-255 71-338 (354)
15 4b8j_A Importin subunit alpha- 100.0 2.6E-28 9E-33 233.7 31.1 281 5-297 116-401 (528)
16 4b8j_A Importin subunit alpha- 100.0 7.4E-28 2.5E-32 230.6 29.8 279 5-296 159-443 (528)
17 1wa5_B Importin alpha subunit; 100.0 1.2E-27 4.1E-32 229.3 31.1 280 5-298 129-414 (530)
18 4hxt_A De novo protein OR329; 100.0 3.3E-28 1.1E-32 210.0 23.1 237 6-253 2-243 (252)
19 2jdq_A Importin alpha-1 subuni 100.0 5.5E-27 1.9E-31 219.2 31.5 278 6-297 64-348 (450)
20 2jdq_A Importin alpha-1 subuni 100.0 4.2E-27 1.4E-31 220.0 29.6 279 5-296 106-390 (450)
21 4db8_A Armadillo-repeat protei 100.0 1.8E-28 6.2E-33 212.4 18.2 236 5-251 11-251 (252)
22 1wa5_B Importin alpha subunit; 100.0 4.4E-27 1.5E-31 225.4 28.6 279 5-296 172-457 (530)
23 4hxt_A De novo protein OR329; 100.0 4.5E-27 1.5E-31 202.9 22.8 238 48-299 2-244 (252)
24 1jdh_A Beta-catenin; beta-cate 100.0 3.5E-27 1.2E-31 225.1 23.2 283 5-297 58-386 (529)
25 1jdh_A Beta-catenin; beta-cate 99.9 3.5E-26 1.2E-30 218.2 25.9 284 3-297 14-340 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 4.1E-26 1.4E-30 223.7 23.8 282 6-297 56-383 (644)
27 4db8_A Armadillo-repeat protei 99.9 1.8E-26 6.3E-31 199.7 19.0 235 47-295 11-250 (252)
28 2z6h_A Catenin beta-1, beta-ca 99.9 1.2E-25 4.2E-30 220.3 26.6 284 2-296 10-336 (644)
29 3tt9_A Plakophilin-2; cell adh 99.9 1E-26 3.4E-31 198.4 15.0 199 5-208 7-230 (233)
30 3tt9_A Plakophilin-2; cell adh 99.9 6.7E-26 2.3E-30 193.3 13.3 197 49-252 9-230 (233)
31 2z6g_A B-catenin; FULL-length, 99.9 2.8E-24 9.7E-29 214.7 23.4 281 5-299 359-666 (780)
32 2z6g_A B-catenin; FULL-length, 99.9 1.8E-24 6.3E-29 216.1 20.2 276 5-297 149-429 (780)
33 4db6_A Armadillo repeat protei 99.9 4.1E-24 1.4E-28 180.0 18.8 195 5-207 11-209 (210)
34 3opb_A SWI5-dependent HO expre 99.9 3.4E-24 1.2E-28 208.2 20.2 285 6-297 376-729 (778)
35 4db6_A Armadillo repeat protei 99.9 5E-23 1.7E-27 173.3 20.1 197 86-296 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 4.3E-21 1.5E-25 170.0 21.3 234 8-250 30-286 (296)
37 3opb_A SWI5-dependent HO expre 99.9 2.1E-20 7.1E-25 181.8 21.3 277 6-295 334-682 (778)
38 1xqr_A HSPBP1 protein; armadil 99.9 7.2E-21 2.5E-25 168.6 16.7 183 106-297 54-239 (296)
39 3grl_A General vesicular trans 99.6 3.3E-13 1.1E-17 128.4 23.6 286 2-295 56-393 (651)
40 3grl_A General vesicular trans 99.6 2.8E-13 9.6E-18 128.9 23.0 280 4-295 19-341 (651)
41 1oyz_A Hypothetical protein YI 99.5 7.7E-12 2.6E-16 109.4 20.5 229 4-296 21-250 (280)
42 3ltm_A Alpha-REP4; protein eng 99.4 1.2E-11 4E-16 103.6 19.8 188 4-252 17-204 (211)
43 3ltj_A Alpharep-4; protein eng 99.4 2.5E-11 8.6E-16 100.8 19.2 186 4-250 12-197 (201)
44 3ltm_A Alpha-REP4; protein eng 99.4 1.8E-10 6.1E-15 96.3 21.1 189 46-298 17-205 (211)
45 3ltj_A Alpharep-4; protein eng 99.3 3E-10 1E-14 94.2 20.6 185 47-295 13-197 (201)
46 4fdd_A Transportin-1; heat rep 99.3 1E-10 3.6E-15 117.8 17.4 276 5-297 127-430 (852)
47 1oyz_A Hypothetical protein YI 99.2 4.7E-10 1.6E-14 98.0 18.5 224 5-292 53-278 (280)
48 4fdd_A Transportin-1; heat rep 99.2 4.5E-11 1.5E-15 120.5 12.0 274 6-297 174-472 (852)
49 4gmo_A Putative uncharacterize 99.2 1.5E-10 5.2E-15 113.9 12.4 201 4-206 32-257 (684)
50 1b3u_A Protein (protein phosph 99.2 1.3E-09 4.5E-14 104.5 18.6 265 6-295 164-430 (588)
51 1b3u_A Protein (protein phosph 99.2 3.4E-09 1.2E-13 101.5 21.4 264 8-295 89-352 (588)
52 1ibr_B P95, importin beta-1 su 99.1 1E-09 3.4E-14 102.1 14.7 276 5-298 127-439 (462)
53 2vgl_B AP-2 complex subunit be 99.1 5.9E-09 2E-13 100.9 20.3 261 6-294 121-417 (591)
54 4gmo_A Putative uncharacterize 99.1 5.1E-10 1.7E-14 110.1 11.9 197 88-295 34-257 (684)
55 2vgl_B AP-2 complex subunit be 99.0 1.8E-08 6.3E-13 97.4 19.2 266 7-296 87-382 (591)
56 2bpt_A Importin beta-1 subunit 98.9 3.1E-08 1.1E-12 99.3 17.6 275 7-296 370-668 (861)
57 1w63_A Adapter-related protein 98.9 9.8E-08 3.4E-12 92.8 18.0 258 5-299 106-382 (618)
58 1w63_A Adapter-related protein 98.8 3.5E-07 1.2E-11 88.9 21.2 258 6-296 142-414 (618)
59 1qgr_A Protein (importin beta 98.8 5.3E-07 1.8E-11 90.4 22.6 273 6-297 128-438 (876)
60 1u6g_C TIP120 protein, CAND1; 98.8 1.9E-08 6.3E-13 105.2 11.0 279 1-297 1-285 (1230)
61 1ibr_B P95, importin beta-1 su 98.8 1E-07 3.5E-12 88.4 14.7 271 9-297 93-396 (462)
62 1qgr_A Protein (importin beta 98.8 1.6E-07 5.3E-12 94.4 17.0 277 7-296 367-679 (876)
63 2bpt_A Importin beta-1 subunit 98.6 4.6E-06 1.6E-10 83.5 22.5 274 6-297 134-441 (861)
64 3b2a_A TON_1937, putative unch 98.5 2.8E-06 9.5E-11 70.7 13.8 186 5-209 32-220 (265)
65 1te4_A Conserved protein MTH18 98.5 3.2E-08 1.1E-12 76.3 1.5 122 4-163 10-131 (131)
66 2qk2_A LP04448P; mini spindles 98.5 8.2E-07 2.8E-11 75.6 10.2 181 10-207 19-205 (242)
67 1u6g_C TIP120 protein, CAND1; 98.4 1.3E-06 4.4E-11 91.4 13.2 228 6-253 48-286 (1230)
68 2vgl_A Adaptor protein complex 98.4 2.1E-05 7.1E-10 76.4 20.0 259 6-297 111-399 (621)
69 2vgl_A Adaptor protein complex 98.4 7.5E-05 2.6E-09 72.5 23.3 259 6-294 146-431 (621)
70 2qk1_A Protein STU2; STU2P, XM 98.3 7.3E-06 2.5E-10 70.3 11.6 189 11-207 21-220 (249)
71 2qk2_A LP04448P; mini spindles 98.2 4.9E-05 1.7E-09 64.5 14.6 184 91-295 18-204 (242)
72 1ho8_A Vacuolar ATP synthase s 98.2 0.00012 4.1E-09 67.6 17.9 237 53-295 172-475 (480)
73 2iw3_A Elongation factor 3A; a 97.9 0.00062 2.1E-08 68.7 19.5 260 8-296 56-324 (986)
74 1te4_A Conserved protein MTH18 97.9 1.2E-05 4.2E-10 61.5 5.4 88 7-118 43-130 (131)
75 4ady_A RPN2, 26S proteasome re 97.8 0.0034 1.2E-07 62.9 21.7 226 20-296 451-676 (963)
76 2qk1_A Protein STU2; STU2P, XM 97.8 0.00017 5.8E-09 61.7 10.9 150 8-165 62-220 (249)
77 3b2a_A TON_1937, putative unch 97.8 0.00051 1.7E-08 57.3 13.0 148 4-167 73-220 (265)
78 3dad_A FH1/FH2 domain-containi 97.7 0.0025 8.6E-08 56.1 17.2 190 90-287 120-327 (339)
79 3dad_A FH1/FH2 domain-containi 97.7 0.00097 3.3E-08 58.7 14.4 152 136-294 120-284 (339)
80 2db0_A 253AA long hypothetical 97.6 0.01 3.6E-07 47.6 18.1 215 5-252 31-247 (253)
81 3tjz_B Coatomer subunit gamma; 97.5 0.00053 1.8E-08 61.5 10.8 240 8-289 106-346 (355)
82 1ho8_A Vacuolar ATP synthase s 97.5 0.015 5.3E-07 53.6 20.4 221 6-231 77-330 (480)
83 3tjz_B Coatomer subunit gamma; 97.5 0.004 1.4E-07 55.8 16.3 245 9-296 71-316 (355)
84 4ady_A RPN2, 26S proteasome re 97.4 0.051 1.8E-06 54.5 23.4 249 6-300 472-724 (963)
85 3oc3_A Helicase MOT1, MOT1; re 97.2 0.01 3.5E-07 55.7 15.1 244 8-292 176-432 (800)
86 2iw3_A Elongation factor 3A; a 97.0 0.051 1.7E-06 55.0 19.6 270 8-300 97-383 (986)
87 2db0_A 253AA long hypothetical 97.0 0.1 3.5E-06 41.9 19.8 213 47-294 31-244 (253)
88 4ffb_C Protein STU2; tubulin f 96.3 0.097 3.3E-06 44.9 14.1 183 11-207 14-212 (278)
89 2fv2_A RCD1 required for cell 95.9 0.099 3.4E-06 44.1 11.4 147 22-174 72-233 (268)
90 1wa5_C Importin alpha RE-expor 95.9 1.1 3.7E-05 45.4 21.5 261 21-296 376-670 (960)
91 2fv2_A RCD1 required for cell 95.8 0.068 2.3E-06 45.1 10.1 98 196-295 74-173 (268)
92 3ebb_A Phospholipase A2-activa 95.5 0.54 1.8E-05 41.0 15.2 190 49-244 104-299 (304)
93 1wa5_C Importin alpha RE-expor 95.4 1.7 5.9E-05 43.9 20.9 222 17-250 416-669 (960)
94 1upk_A MO25 protein; transfera 95.2 1.5 5.1E-05 38.5 18.1 199 84-296 74-283 (341)
95 3ebb_A Phospholipase A2-activa 94.8 1.1 3.8E-05 39.0 15.1 164 7-176 104-274 (304)
96 1upk_A MO25 protein; transfera 94.8 0.58 2E-05 41.1 13.0 195 6-209 78-285 (341)
97 4ffb_C Protein STU2; tubulin f 94.6 0.22 7.7E-06 42.5 10.2 145 10-165 59-212 (278)
98 3oc3_A Helicase MOT1, MOT1; re 94.4 0.074 2.5E-06 50.1 6.7 169 6-203 263-432 (800)
99 2x19_B Importin-13; nuclear tr 94.3 3.5 0.00012 41.4 19.8 155 16-186 459-621 (963)
100 2of3_A ZYG-9; multifunctional 94.2 0.71 2.4E-05 39.3 12.2 173 10-205 50-234 (266)
101 2of3_A ZYG-9; multifunctional 93.8 0.82 2.8E-05 39.0 11.6 187 51-259 49-244 (266)
102 3c2g_A SYS-1 protein; beta-cat 93.5 0.98 3.4E-05 40.0 11.7 127 72-205 266-401 (619)
103 2f31_A Diaphanous protein homo 93.2 1.3 4.3E-05 36.9 11.9 151 132-288 42-220 (233)
104 1lrv_A LRV, leucine-rich repea 92.4 0.053 1.8E-06 45.8 2.2 52 235-289 183-239 (244)
105 3u0r_A Apoptosis inhibitor 5; 92.3 4.3 0.00015 37.4 14.6 123 16-162 38-160 (507)
106 2x1g_F Cadmus; transport prote 91.6 2.9 9.9E-05 42.2 14.3 217 18-252 476-723 (971)
107 2x1g_F Cadmus; transport prote 91.6 8.9 0.0003 38.6 17.9 275 6-295 501-813 (971)
108 3eg5_B Protein diaphanous homo 91.6 3 0.0001 37.5 12.9 149 132-286 108-284 (383)
109 2bnx_A Diaphanous protein homo 91.4 3 0.0001 37.6 12.7 149 133-287 47-223 (386)
110 3c2g_A SYS-1 protein; beta-cat 91.4 4.4 0.00015 35.9 13.0 113 29-145 265-378 (619)
111 3eg5_B Protein diaphanous homo 89.3 9.7 0.00033 34.1 14.2 171 10-188 70-275 (383)
112 2x19_B Importin-13; nuclear tr 88.8 21 0.00071 35.8 22.2 222 58-296 459-714 (963)
113 2f31_A Diaphanous protein homo 88.4 9.6 0.00033 31.5 13.3 150 12-168 6-183 (233)
114 3gjx_A Exportin-1; transport, 86.2 21 0.00072 36.6 15.9 219 7-252 29-276 (1073)
115 1lsh_A Lipovitellin (LV-1N, LV 85.8 34 0.0011 35.1 18.2 137 89-248 392-540 (1056)
116 1x5b_A Signal transducing adap 85.8 2.2 7.5E-05 33.4 6.8 71 5-75 51-123 (163)
117 4hat_C Exportin-1; heat repeat 85.3 3.5 0.00012 42.1 9.7 101 148-252 465-570 (1023)
118 4hat_C Exportin-1; heat repeat 84.6 5.1 0.00017 41.0 10.5 141 18-166 465-619 (1023)
119 1mhq_A ADP-ribosylation factor 83.7 2.6 9.1E-05 32.3 6.3 73 4-76 36-115 (148)
120 3u0r_A Apoptosis inhibitor 5; 83.1 20 0.00068 33.1 12.6 71 104-188 40-111 (507)
121 1juq_A ADP-ribosylation factor 82.3 3 0.0001 32.9 6.2 72 5-76 49-127 (171)
122 2bnx_A Diaphanous protein homo 82.0 28 0.00095 31.1 14.4 176 11-194 9-219 (386)
123 1vdy_A Hypothetical protein (R 81.8 3.6 0.00012 31.3 6.2 75 221-299 51-133 (140)
124 3ibv_A Exportin-T; karyopherin 81.8 47 0.0016 33.6 19.6 262 8-292 8-302 (980)
125 3ldz_A STAM-1, signal transduc 81.3 6.2 0.00021 29.9 7.5 71 221-296 44-114 (140)
126 3m1i_C Exportin-1; heat repeat 80.8 47 0.0016 33.8 16.1 212 58-297 26-264 (1049)
127 3ldz_A STAM-1, signal transduc 80.7 4.1 0.00014 30.9 6.3 72 5-76 41-113 (140)
128 1lrv_A LRV, leucine-rich repea 78.6 1.4 4.7E-05 37.1 3.2 20 10-29 78-97 (244)
129 3a6p_A Exportin-5; exportin-5, 78.4 51 0.0017 34.2 15.6 222 8-253 13-278 (1204)
130 1x5b_A Signal transducing adap 77.4 10 0.00034 29.5 7.8 71 221-296 54-125 (163)
131 1lsh_A Lipovitellin (LV-1N, LV 76.7 31 0.0011 35.3 13.2 130 9-168 443-579 (1056)
132 3g2s_A C-terminal fragment of 76.2 8.8 0.0003 29.4 7.0 73 4-76 46-125 (149)
133 3ibv_A Exportin-T; karyopherin 74.0 79 0.0027 32.0 18.7 201 6-217 40-273 (980)
134 3m1i_C Exportin-1; heat repeat 72.2 22 0.00077 36.1 10.9 138 18-165 465-618 (1049)
135 3g2s_A C-terminal fragment of 71.6 16 0.00056 27.9 7.5 71 221-296 50-126 (149)
136 3gjx_A Exportin-1; transport, 69.4 1.1E+02 0.0036 31.5 16.6 217 50-297 30-276 (1073)
137 1juq_A ADP-ribosylation factor 69.4 14 0.00049 28.9 6.9 71 221-296 52-128 (171)
138 1mhq_A ADP-ribosylation factor 68.6 14 0.00047 28.2 6.5 71 221-296 40-116 (148)
139 3zyq_A Hepatocyte growth facto 67.4 11 0.00039 30.9 6.2 73 4-76 43-117 (226)
140 1dvp_A HRS, hepatocyte growth 64.5 13 0.00046 30.3 6.1 72 5-76 41-114 (220)
141 3gs3_A Symplekin, LD45768P; he 64.1 63 0.0022 27.0 14.1 103 8-119 55-171 (257)
142 3zyq_A Hepatocyte growth facto 62.1 21 0.00072 29.3 6.9 71 221-296 47-118 (226)
143 1elk_A Target of MYB1; superhe 58.9 26 0.0009 26.9 6.5 72 5-76 52-129 (157)
144 1dvp_A HRS, hepatocyte growth 58.1 29 0.001 28.2 7.1 71 221-296 44-115 (220)
145 3l9t_A Putative uncharacterize 56.0 85 0.0029 25.9 9.4 71 49-124 140-210 (240)
146 3o2t_A Symplekin; heat repeat, 54.6 1.2E+02 0.004 27.1 12.9 105 6-119 63-181 (386)
147 3gae_A Protein DOA1; UFD3, CDC 47.4 21 0.00071 29.9 4.5 107 16-124 100-220 (253)
148 3l9t_A Putative uncharacterize 45.9 1.3E+02 0.0043 24.9 11.3 133 17-175 82-218 (240)
149 3o2t_A Symplekin; heat repeat, 45.8 1.3E+02 0.0043 26.9 9.6 131 18-163 38-181 (386)
150 1elk_A Target of MYB1; superhe 45.2 71 0.0024 24.4 7.0 71 221-296 55-130 (157)
151 3qml_C Protein SLS1, nucleotid 45.2 1.5E+02 0.0051 25.5 13.1 151 136-295 24-188 (315)
152 3qml_C Protein SLS1, nucleotid 45.2 1.5E+02 0.0051 25.5 12.5 102 14-120 78-188 (315)
153 3vld_A DNA mismatch repair pro 43.4 2E+02 0.0068 26.5 10.6 109 86-205 114-223 (500)
154 3vld_A DNA mismatch repair pro 36.9 2.2E+02 0.0075 26.2 9.7 84 7-97 117-205 (500)
155 3pst_A Protein DOA1; protein d 28.2 1.2E+02 0.0042 27.3 6.5 103 16-121 272-389 (425)
156 1fyh_A Interferon-gamma; cytok 27.3 2E+02 0.0067 23.8 7.0 149 4-163 89-241 (258)
157 3gs3_A Symplekin, LD45768P; he 26.3 2.8E+02 0.0095 23.0 12.1 132 18-163 28-171 (257)
158 3l3f_X Protein DOA1, DOA1/UFD3 22.4 1.8E+02 0.0061 25.7 6.4 106 16-122 209-327 (362)
159 4atg_A TAF6; transcription, TF 22.0 3E+02 0.01 21.8 11.8 139 135-285 41-187 (196)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.2e-35 Score=268.43 Aligned_cols=271 Identities=18% Similarity=0.215 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHhcCcccc-hh-hhh-h
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-----------SSHAFQENAAATLLNLSITSR-DS-LMS-T 86 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~la~~~~-~~-~i~-~ 86 (315)
..+..|+++|.+++.+ +++|+.|++.|++++|+.+|.+ .++.+|+.|+++|.|++.+++ ++ .+. .
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5667999999999976 7999999999999999999952 236799999999999998874 44 443 4
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.|++|.|+++|++ +++++++.++++|+||+.. +++|..+.+.|+ ||+|+.+|.. .+++.+++.|+++|+||+
T Consensus 126 ~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~-Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 126 KGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS-VKALMECALE-VKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH-HHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC-HHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 4559999999997 7899999999999999974 467888888655 9999998643 467899999999999999
Q ss_pred c-CCCcHHHHH-hhCCcHHHHHHHhcCCCc---chHHHHHHHHHHHhc----ChhhHHHHHhcCCHHHHHHHhhcCCCCC
Q 021242 165 L-YPLNRYQVI-ALGGVQPLFSLVVNGGRA---GIVEDASAVIAQIAG----CEESVDEFKKCCGIGVLVDLLDLGTGSG 235 (315)
Q Consensus 165 ~-~~~~~~~i~-~~g~v~~L~~lL~~~~~~---~~~~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~~~~~ 235 (315)
. .++++..++ ..|+++.|+++|.+..+. .+++.|+++|+||+. ++++++.+.+.|+++.|+.+|+++ +
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~---~ 276 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---S 276 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS---C
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC---C
Confidence 9 668888887 689999999999643222 488999999999985 899999999999999999999986 8
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCcc
Q 021242 236 HRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITM 304 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~ 304 (315)
..++++|+++|++++.. .++.++.+++ .|+++.|+.+++++++++|+.|+++|.+|...+...+-.
T Consensus 277 ~~v~~~A~~aL~nLa~~-~~~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSAR-NPKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHHHHHHHHHHHTSS-CHHHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred hHHHHHHHHHHHHHhCC-CHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 89999999999999863 3567788888 999999999999999999999999999999876554433
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.9e-34 Score=271.88 Aligned_cols=284 Identities=17% Similarity=0.143 Sum_probs=238.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc-cc-hhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT-SR-DSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~-~~-~~~ 83 (315)
..+|.+|++|++++++.|..|+++|.+++.+++.++..+++.|+||.|+++|++.++.+++.|+++|.|++.+ ++ +..
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5799999999999999999999999999988778898999999999999999999999999999999999987 44 445
Q ss_pred hhhcCchHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh--------ccC------C
Q 021242 84 MSTRGLLDAISHVLR-HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK--------TRN------S 148 (315)
Q Consensus 84 i~~~~~i~~L~~lL~-~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~--------~~~------~ 148 (315)
+.+.|++|.|+++|+ + +++++++.++++|+||+..++++..+.+ ++ +|.|+.++. ++. .
T Consensus 82 i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~-i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKEELIA-DA-LPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HH-HHHHHHHTTHHHHTCC---------CC
T ss_pred HHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcCHHhHHHHHh-cc-HHHHHHHHhccccccccCccchhcccc
Confidence 679999999999998 5 6889999999999999988889998887 55 999999993 110 2
Q ss_pred ChHHHHHHHHHHHHhccCCCcHHHHHhh-CCcHHHHHHHhcC-----CCcchHHHHHHHHHHHhcCh-------------
Q 021242 149 PLRSVKDALKALFGIALYPLNRYQVIAL-GGVQPLFSLVVNG-----GRAGIVEDASAVIAQIAGCE------------- 209 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~L~~lL~~~-----~~~~~~~~a~~~L~~L~~~~------------- 209 (315)
++.+...|+++|+|||.+++++..+++. |+++.|+.+|.+. ++..+.+.++++|+||+...
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 4567779999999999998889999997 9999999999731 45678899999999997321
Q ss_pred --------------------------------------hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 210 --------------------------------------ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 210 --------------------------------------~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
.+.+.+++.++++.|+.+|... .++.+++.|+++|+|||.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTA 313 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhcc
Confidence 1223344556689999999875 368999999999999997
Q ss_pred cCCHH---HHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 252 FGGER---AAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 252 ~~~~~---~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
...+. ..+.++. ..|++|.|+.+++++++++++.|+++|++++.+.
T Consensus 314 ~~~~~~~~~~~~~v~-~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGL-KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp CSSSHHHHHHHHHHT-TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred CcCcchHHHHHHHHH-HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 44321 2134453 3899999999999999999999999999998753
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=269.64 Aligned_cols=281 Identities=17% Similarity=0.202 Sum_probs=237.1
Q ss_pred hhhHHHHHHHhCCCC--HH------------HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-----------
Q 021242 5 RRTVRSLVTKLGSVS--EQ------------TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS----------- 59 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~--~~------------~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----------- 59 (315)
+.+.+.+++++.+.. .+ .+..|+++|.+++.+ +++|+.|.+.|++++|+.+|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~ 211 (458)
T 3nmz_A 133 RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 211 (458)
T ss_dssp HHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCH
T ss_pred hhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCC
Confidence 445567788887652 11 234999999999865 8999999999999999999952
Q ss_pred CCHHHHHHHHHHHHhcCcccc-hh-hhh-hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhhhhhccc
Q 021242 60 SSHAFQENAAATLLNLSITSR-DS-LMS-TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPIIGAKRD 134 (315)
Q Consensus 60 ~~~~~~~~a~~~L~~la~~~~-~~-~i~-~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~g 134 (315)
.++.+++.|+++|.|++.+++ ++ .+. ..|++|.|+++|++ ++++++..++++|+||+.. ++++..+.+.||
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 236789999999999999875 44 443 45569999999997 7899999999999999974 457888888655
Q ss_pred cHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHH-hhCCcHHHHHHHhcCCCc---chHHHHHHHHHHHhc--
Q 021242 135 IIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVI-ALGGVQPLFSLVVNGGRA---GIVEDASAVIAQIAG-- 207 (315)
Q Consensus 135 ~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~-~~g~v~~L~~lL~~~~~~---~~~~~a~~~L~~L~~-- 207 (315)
||+|+.+|.. .+++.+++.|+++|+||+. .++++..++ ..|+++.|+++|.+..+. .+++.|+++|+||+.
T Consensus 288 -I~~LV~lLl~-s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 288 -VKALMECALE-VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp -HHHHHHHHTT-CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 9999998653 4678899999999999999 778898888 689999999999643222 378999999999984
Q ss_pred --ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHH
Q 021242 208 --CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKT 285 (315)
Q Consensus 208 --~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~ 285 (315)
.+++++.+.+.|+++.|+.+|+++ +..++++|+++|+|++.. .++.+..+++ .|+++.|+.+++++++++++
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~---~~~v~~~A~~aL~nLa~~-~~~~~~~i~~--~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSAR-NPKDQEALWD--MGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCS---CHHHHHHHHHHHHHHHSS-CHHHHHHHHH--HTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCC---ChHHHHHHHHHHHHHHcC-CHHHHHHHHH--CCCHHHHHHHHhCCCHHHHH
Confidence 889999999999999999999987 889999999999999863 3567788888 99999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 021242 286 KAVALLKILVDDG 298 (315)
Q Consensus 286 ~A~~~L~~l~~~~ 298 (315)
.|+++|.+|...+
T Consensus 440 ~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 440 GSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998654
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-33 Score=270.51 Aligned_cols=289 Identities=17% Similarity=0.171 Sum_probs=238.0
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc--cc-
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT--SR- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~--~~- 80 (315)
....|+.||++|.+++++.|..|+++|.+++..++++|..+++.|+||+|+.+|++.++++|+.|+++|+||+.+ ++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 346799999999999999999999999999988889999999999999999999999999999999999999985 33
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhc---------------
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKT--------------- 145 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~--------------- 145 (315)
+..+.+.|+|+.|+.+|++ ..+.++++.++++|++|+..++++..|.. +| +|.|++++..
T Consensus 126 k~~I~~~GaIp~LV~LL~s---~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~a-lp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRK---ARDMDLTEVITGTLWNLSSHDSIKMEIVD-HA-LHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHH---CCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HT-HHHHHHHTHHHHHCCC---------
T ss_pred HHHHHHcCCHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhhHHHHh-cc-HHHHHHHHhcccccccccccccccc
Confidence 4567799999999999996 25678999999999999998999999985 56 9999998721
Q ss_pred -cCCChHHHHHHHHHHHHhccCCC-cHHHHHhh-CCcHHHHHHHhcC-----CCcchHHHHHHHHHHHhcChh-------
Q 021242 146 -RNSPLRSVKDALKALFGIALYPL-NRYQVIAL-GGVQPLFSLVVNG-----GRAGIVEDASAVIAQIAGCEE------- 210 (315)
Q Consensus 146 -~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~-g~v~~L~~lL~~~-----~~~~~~~~a~~~L~~L~~~~~------- 210 (315)
+..++.++.+|+++|.||+.+.+ +|..+++. |+++.|+.++.+. ++...++.|+++|+|||...+
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 02357899999999999999764 58888885 6678999999632 455788999999999987521
Q ss_pred -------------------hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH--HHHHHHHHHccCcH
Q 021242 211 -------------------SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE--RAAEEVKEMAMQVA 269 (315)
Q Consensus 211 -------------------~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~ 269 (315)
+.+.+++.++++.|+.+|+.+ .+..++++|+++|++||.+... ...+.+++ ..|++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-~~~gl 357 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGRYIRSALR-QEKAL 357 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-SHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-HcCcH
Confidence 111222233467889999764 3789999999999999875422 12233443 37899
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhhCCCC
Q 021242 270 DGIADVAQNGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 270 ~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
|.|+.|+.++++.+++.|+++|++|+.+...
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999987553
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=259.43 Aligned_cols=289 Identities=15% Similarity=0.148 Sum_probs=238.3
Q ss_pred hhhhHHHHHHHhCCC------------CHHHHHHHHHHHHHHhccCchhhHHHHhCCCH----------HHHHHHHcCCC
Q 021242 4 KRRTVRSLVTKLGSV------------SEQTRAEALAELRLLSKHDAEIRPMISEAGSI----------PYLAEILYSSS 61 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~Lv~lL~~~~ 61 (315)
+.+.+|.||++|+.. +++.|.+|+++|.+++..+++......+.|++ +.+++++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 567899999999863 37999999999999999888888888888888 77777776542
Q ss_pred --HH-----HHH-------HHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcC-----C--CCCCHHHHHHHHHHHHHh
Q 021242 62 --HA-----FQE-------NAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHH-----S--TSTSSAAVQSSAATLHSL 119 (315)
Q Consensus 62 --~~-----~~~-------~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~-----~--~~~~~~~~~~a~~~L~~L 119 (315)
.+ +++ .|+++|.|++.+++ +..+.+.|+++.|+.+|... . ...++.++..|+++|.||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 333 89999999998876 56778999999999999520 0 002456889999999999
Q ss_pred hcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHH
Q 021242 120 LVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVE 196 (315)
Q Consensus 120 s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~ 196 (315)
+..++ ++..+...+|+||.|+.+|. .++++++..|+++|+||+.. ++++..+++.|++|.|+++|.+.++..+++
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 97654 67777655688999999999 56899999999999999984 468889999999999999875445678899
Q ss_pred HHHHHHHHHhc-ChhhHHHHH-hcCCHHHHHHHhhcCCCC-ChhHHHHHHHHHHHHhcc--CCHHHHHHHHHHccCcHHH
Q 021242 197 DASAVIAQIAG-CEESVDEFK-KCCGIGVLVDLLDLGTGS-GHRVKENAVSALLNLVNF--GGERAAEEVKEMAMQVADG 271 (315)
Q Consensus 197 ~a~~~L~~L~~-~~~~~~~i~-~~~~i~~Lv~ll~~~~~~-~~~~~~~a~~~L~~l~~~--~~~~~~~~i~~~~~g~~~~ 271 (315)
.++++|.||+. +++++..+. ..|+++.|+++|..+... ...+++.++++|++|+.. +.++.++.+++ .|+++.
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~--~G~i~~ 383 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE--NNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--cccHHH
Confidence 99999999999 888898888 678899999999875110 115899999999999851 34567788887 999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 272 IADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 272 L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
|+.++.++++.++++|+++|.+++.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999999984
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=8e-32 Score=257.38 Aligned_cols=286 Identities=18% Similarity=0.207 Sum_probs=244.6
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
+.+.||.||++|+++ ++++|..|+++|.+++..++++++.+++.|+||.|+.+|+++++++++.|+++|+|++.+..
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 346799999999755 58999999999999998889999999999999999999999999999999999999998764
Q ss_pred hhhhhhcCchHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHST-STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+..+.+.|+++.|+.++.++.. .........++++|.+++........+....+++|.|+.++. +.+++++..|+++
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~A~~a 255 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 5567799999999999985321 123456778999999999866555444443567999999999 5689999999999
Q ss_pred HHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
|.+|+.+++.+ ..+++.|+++.|+++|. +++..++..++++|.|++. .+..+..+.+.|+++.|+.++.++ +..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---~~~ 331 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTN 331 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS---SHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhc-CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC---CHH
Confidence 99999977655 45667899999999996 5678899999999999976 577888889999999999999976 889
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
+++.++++|.||+... +..+..+.+ .|+++.|+.+++++++.+|+.|+++|.++....
T Consensus 332 v~~~A~~aL~nl~a~~-~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 332 IQKEATWTMSNITAGR-QDQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHHHHHHHHTTSC-HHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCc-HHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 9999999999998744 456677877 899999999999999999999999999997644
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.3e-31 Score=252.54 Aligned_cols=291 Identities=15% Similarity=0.157 Sum_probs=236.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccc-h
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~-~ 81 (315)
+.+.||.||++|++++++.|..|+++|++++.+++++|..+++.|+||+|+++|+ +.++++++.|+++|+|++.+++ +
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 4578999999999999999999999999999887899999999999999999998 7899999999999999999865 4
Q ss_pred hhhhhcCchHHHHHHHh--------cCCCC----CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc---
Q 021242 82 SLMSTRGLLDAISHVLR--------HHSTS----TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR--- 146 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~--------~~~~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--- 146 (315)
..+.+ |++|.|+++|. ++... .++++...|+++|+||+..++++..+.+..|+++.|+.++.+.
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 44557 99999999993 21000 2355666999999999987788888887635589999888630
Q ss_pred --------------------------------------------------------------------------------
Q 021242 147 -------------------------------------------------------------------------------- 146 (315)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (315)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred --------------CCChHHHHHHHHHHHHhccCCCc------HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 147 --------------NSPLRSVKDALKALFGIALYPLN------RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 147 --------------~~~~~~~~~a~~aL~~Ls~~~~~------~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
..++.+++.|+|+|+||+..... +..+.+.|++|.|+++|. +++..++..|+++|+||+
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~-~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT-CSCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh-CCCHhHHHHHHHHHHHHh
Confidence 01245566789999999985432 223336899999999996 577889999999999999
Q ss_pred cChhhHHHHHhcCCHHHHHHHhhcCCC---CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHH
Q 021242 207 GCEESVDEFKKCCGIGVLVDLLDLGTG---SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAK 282 (315)
Q Consensus 207 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~ 282 (315)
.++.++..+. .++++.|+++|..++. .+.++...++++|.++...+. ..+..+.+ .|++++|+.++.++ +++
T Consensus 360 ~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~--~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 360 RHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFS--SSMLNNIINLCRSSASPK 435 (457)
T ss_dssp TSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCC--HHHHHHHHHHHHCTTCHH
T ss_pred cCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHH--cCCHHHHHHHHcCCCcHH
Confidence 9888887665 5799999999987521 123677789999999987554 56677776 89999999999999 999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 021242 283 GKTKAVALLKILVDDGNM 300 (315)
Q Consensus 283 ~k~~A~~~L~~l~~~~~~ 300 (315)
++++|.++|.++-.++..
T Consensus 436 i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHHHHcchhh
Confidence 999999999988655443
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=4.7e-31 Score=253.14 Aligned_cols=286 Identities=18% Similarity=0.206 Sum_probs=245.5
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
+.+.||.||++|+.+ ++++|..|+++|.+++..++.++..+++.|+||.|+.+|.+.++++++.|+++|+|++.+..
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 457899999999754 68999999999999999888899999999999999999999999999999999999998764
Q ss_pred hhhhhhcCchHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHST-STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+..+.+.|+++.|+.+|..+.. .........++++|.+++........+....+++|.|+.++. +++++++..|+++
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~a~~a 274 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc--CCcHHHHHHHHHH
Confidence 5567799999999999975321 123456778999999999866554444433466999999999 5689999999999
Q ss_pred HHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
|.+++.+++.+ ..+++.|+++.|+.+|. +++..++..++.+|.|++. ++..+..+.+.|+++.|+.++.++ +..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---~~~ 350 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTN 350 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS---SHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC---CHH
Confidence 99999977655 45668899999999996 5678899999999999976 577888899999999999999976 889
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
+++.|+++|.+|+... +.....+++ .|++|.|+.+++++++.+++.|+++|.++...+
T Consensus 351 i~~~a~~aL~nl~~~~-~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 351 IQKEATWTMSNITAGR-QDQIQQVVN--HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHHHHHHHHHTSC-HHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHh--cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999754 456677777 999999999999999999999999999997644
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.7e-31 Score=253.99 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=230.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-CchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccch
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKH-DAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~ 81 (315)
..+.||.||++|+++++++|..|+++|.+++.. ++++|..|++.|+||+|+.+|++ .+.++++.|+.+|+||+.++.+
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 347899999999999999999999999999985 58999999999999999999997 5788999999999999998764
Q ss_pred h-hhhhcCchHHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhc
Q 021242 82 S-LMSTRGLLDAISHVLRHHS--------------TSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKT 145 (315)
Q Consensus 82 ~-~i~~~~~i~~L~~lL~~~~--------------~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~ 145 (315)
+ .+. .++++.|++++..+. ...+++++.+|+++|+||+... ++|..+.+++|+++.|+.+++.
T Consensus 168 k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4 344 468999999872100 0135788999999999999865 4588888877878888887752
Q ss_pred c------------------------------------------------------------------------CCChHHH
Q 021242 146 R------------------------------------------------------------------------NSPLRSV 153 (315)
Q Consensus 146 ~------------------------------------------------------------------------~~~~~~~ 153 (315)
+ ..++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 1 0123444
Q ss_pred HHHHHHHHHhccCCC-----cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHh
Q 021242 154 KDALKALFGIALYPL-----NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL 228 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~-----~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll 228 (315)
+.|+++|+|||.... ++..+.+.|++|.|+++|. +++..+++.|+++|+||+.++.++..| ..++++.|+.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT-NEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHh
Confidence 566666666665331 2223345789999999996 567889999999999999988888766 678999999999
Q ss_pred hcCCC-----CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC--CHHHHHHHHHHHHHHhhC
Q 021242 229 DLGTG-----SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG--SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 229 ~~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~--~~~~k~~A~~~L~~l~~~ 297 (315)
..++. .+..+...++++|.||+..+ +..++.+++ .|+++.|+.+++++ ++.+++.|+++|.++-.+
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~--~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRE--TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH--TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHH--CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 87521 14577889999999998744 567788888 99999999999986 899999999999998754
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.98 E-value=5e-31 Score=259.99 Aligned_cols=282 Identities=13% Similarity=0.146 Sum_probs=239.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-----------------------------hhh---HHHHhCCCHHH
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-----------------------------EIR---PMISEAGSIPY 52 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i~~ 52 (315)
.+.||.||++|+++++.++..|+++|.|++..++ .++ +.+++.|+||+
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 5789999999999999999999999999997542 123 68889999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh
Q 021242 53 LAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA 131 (315)
Q Consensus 53 Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 131 (315)
|+.+|+++++.+|+.|+++|.|++.+.+ +..+.+.|++++|+.+|++ +++..+..|+++|.+|+...+....+..
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 9999999999999999999999997755 5567799999999999997 6788999999999999975444443321
Q ss_pred --ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q 021242 132 --KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 132 --~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
..+++|+|+.+|.+ ..+...+..|+++|.||+..+ +++..+++.|+++.|+.+|. +++..++..|+++|+||+..
T Consensus 576 ~~~~~aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQ-DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp HHHHHTHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTS
T ss_pred hhhhcHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC
Confidence 12459999999983 224445578999999999964 77889999999999999997 56788999999999999999
Q ss_pred hhhHHHHHh-cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 209 EESVDEFKK-CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 209 ~~~~~~i~~-~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
++.+..+.+ .|+++.|+.++... +..+++.|+++|++|+..+ +...+.+++ ..|+++.|+.+++++++.+|+.|
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~---d~~vq~~Aa~ALanLt~~s-~~~~~~ii~-~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDE---DEETATACAGALAIITSVS-VKCCEKILA-IASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHHC-HHHHHHHHT-STTHHHHHHHHHTCSSHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCC-HHHHHHHHH-HcCCHHHHHHHHCCCCHHHHHHH
Confidence 999888885 56799999999975 8899999999999998743 456677875 37999999999999999999999
Q ss_pred HHHHHHHhhC
Q 021242 288 VALLKILVDD 297 (315)
Q Consensus 288 ~~~L~~l~~~ 297 (315)
.+++.++...
T Consensus 729 ~~aL~NL~~~ 738 (810)
T 3now_A 729 IVIILNMINA 738 (810)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999999753
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.98 E-value=2.6e-30 Score=248.01 Aligned_cols=279 Identities=15% Similarity=0.202 Sum_probs=243.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcc
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSIT 78 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~ 78 (315)
..+.||.|+.+|.+++++++..|+++|.+++.+++.+|..+.+.|++++|+.+|...+ ..+++.++++|.+++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999998999999999999999999997654 35788999999999987
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc-hhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY-RPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.. ..+....+++|.|+.++.+ ++++++..++++|.+|+..++. ...+.. .|+++.|+.++. +.++.++..
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~--~~~~~v~~~ 312 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLG--ATELPIVTP 312 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHT--CSCHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhc--CCChhHHHH
Confidence 64 3444467899999999997 7889999999999999976554 445555 466999999999 568899999
Q ss_pred HHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCC
Q 021242 156 ALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 156 a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
|+++|+||+.. ++.+..+++.|+++.|+.+|. +++..++..|+++|+||+. .+..+..+.+.|+++.|+.++.++
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-- 389 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-- 389 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--
Confidence 99999999985 456678889999999999996 5778899999999999987 567788888889999999999987
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+..++..|+++|.|++..+..+....+++ .|++++|+.++++.+++++..+...|.++-
T Consensus 390 -~~~v~~~A~~aL~nl~~~~~~~~~~~l~~--~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 390 -DFKTQKAAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHHSCHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHcCCCHHHHHHHHH--CcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999998766666778888 999999999999999999999999887764
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=5.1e-31 Score=259.93 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=244.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh-
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL- 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~- 83 (315)
.+.+|.|+++|+++++.+|..|+++|.+++.+ +++|..+++.|+||+|+.+|+++++..++.|+++|.|++.+.++..
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 36899999999999999999999999999965 6799999999999999999999999999999999999998754322
Q ss_pred h---hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 84 M---STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 84 i---~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+ ...+++++|+.+|.+. .+...+..|+++|.||+.. ++++..+.+.+| ++.|+.++. ++++.++..|+++
T Consensus 573 ~~~~~~~~aIppLv~LL~~~---~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~-l~~Lv~LL~--s~~~~Vq~~A~~~ 646 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQD---CTALENFESLMALTNLASMNESVRQRIIKEQG-VSKIEYYLM--EDHLYLTRAAAQC 646 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHH--SCCTTHHHHHHHH
T ss_pred hcchhhhcHHHHHHHHhCCC---CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC-HHHHHHHHc--CCCHHHHHHHHHH
Confidence 2 1246999999999851 3445566899999999975 467777877655 999999999 5688899999999
Q ss_pred HHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHh-cCCHHHHHHHhhcCCCCCh
Q 021242 160 LFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKK-CCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~-~~~i~~Lv~ll~~~~~~~~ 236 (315)
|+||+.+++.+..+++ .|+++.|+.++. .++..++..|+++|+||+. ++..++.+++ .|+++.|+.++.++ +.
T Consensus 647 L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~---d~ 722 (810)
T 3now_A 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP---SP 722 (810)
T ss_dssp HHHHTTSHHHHHHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS---SH
T ss_pred HHHHhCChHHHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC---CH
Confidence 9999999988888886 799999999996 4678899999999999988 7888899988 78999999999986 99
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC---CHHHHHHHHHHHHHHhhCCCCC
Q 021242 237 RVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG---SAKGKTKAVALLKILVDDGNMN 301 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~---~~~~k~~A~~~L~~l~~~~~~~ 301 (315)
++++.|+++|.|++.. +++.+..+++ .|++++|+.+++.. ++++.+.|..+|.++-+++...
T Consensus 723 ~vq~~A~~aL~NL~~~-s~e~~~~l~e--~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 723 AVQHRGIVIILNMINA-GEEIAKKLFE--TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHT--STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHH--CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999874 4567788887 99999999998654 7999999999999998765543
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=4.1e-30 Score=245.57 Aligned_cols=279 Identities=16% Similarity=0.214 Sum_probs=242.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcc
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSIT 78 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~ 78 (315)
..+.||.|+++|+++++++|..|+++|.+++.+++.+|..+.+.|++++|+.+|.+.+ ..+++.++++|.+++.+
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 3468999999999999999999999999999998999999999999999999998754 35788999999999987
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-hhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.. ..+....++++.|+.++++ ++++++..++++|.+|+...+.+ ..+.. .|+++.|+.++. ..++.++..
T Consensus 221 ~~~~~~~~~~~~~lp~L~~LL~~----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~--~~~~~v~~~ 293 (510)
T 3ul1_B 221 KNPAPPLDAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLG--ATELPIVTP 293 (510)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHT-TTCHHHHHHHHT--CSCHHHHHH
T ss_pred ccchhHHHHHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHHhhchhhhHHHHHh-cccchhhhhhhc--CCChhhhhH
Confidence 64 3444457899999999997 78899999999999999766544 44555 466999999999 568899999
Q ss_pred HHHHHHHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCC
Q 021242 156 ALKALFGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 156 a~~aL~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
|+++|+|++... +.+..+++.|+++.|+.+|. +++..++..|+++|+||+. .+..+..+.+.|+++.|+.++.++
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-- 370 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-- 370 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--
Confidence 999999998854 56678889999999999996 5778899999999999987 577888888989999999999987
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+..++..|+++|.|++..+..+....+++ .|+++.|+.++++.+++++..+.+.|.++-
T Consensus 371 -~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~--~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 371 -DFKTQKEAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHccCCHHHHHHHHH--CCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 89999999999999998766667778888 999999999999999999999999887763
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=8.6e-31 Score=238.19 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=208.9
Q ss_pred hhhhHHHHHHHhCC-----------CCHHHHHHHHHHHHHHhccCchhhHHHHhC-CCHHHHHHHHcCCCHHHHHHHHHH
Q 021242 4 KRRTVRSLVTKLGS-----------VSEQTRAEALAELRLLSKHDAEIRPMISEA-GSIPYLAEILYSSSHAFQENAAAT 71 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~ 71 (315)
..+.++.|+.+|.+ .+++.|..|+++|.+++..++.+|..+... |+||.|+.+|++.++++++.|+++
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 150 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence 34688999999952 246899999999999998877788888764 559999999999999999999999
Q ss_pred HHhcCcc-c-c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccC
Q 021242 72 LLNLSIT-S-R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRN 147 (315)
Q Consensus 72 L~~la~~-~-~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~ 147 (315)
|+||+.+ + + +..+.+.|+++.|+++|.+ .+++++++.++++|++|+. .++++..+....|.+|.|+++|.++.
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~---~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~ 227 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALE---VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhc---CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC
Confidence 9999985 3 3 4556799999999998643 1578899999999999998 66788888743466999999998431
Q ss_pred CC--hHHHHHHHHHHHHhcc----CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCC
Q 021242 148 SP--LRSVKDALKALFGIAL----YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCG 220 (315)
Q Consensus 148 ~~--~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~ 220 (315)
.. .++++.|+++|+||+. +++++..+++.|+++.|+++|. +++..+++.|+++|.||+. ++++++.+.+.|+
T Consensus 228 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 11 1588999999999996 7888999999999999999996 5677899999999999994 7999999999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
|+.|+++++++ +..+++.|+++|.+|+...+.
T Consensus 307 i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 307 VSMLKNLIHSK---HKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTTTCS---SHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHH
Confidence 99999999986 889999999999999986543
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=2.6e-28 Score=233.68 Aligned_cols=281 Identities=18% Similarity=0.160 Sum_probs=244.8
Q ss_pred hhhHHHHHHHhCCCC-HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSVS-EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.+.+|.|+++|++++ +++|..|+++|.+++..+++++..+++.|+||.|+.+|.+.++.+++.|+++|.+++.+.. +
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467999999999987 9999999999999999888999999999999999999999999999999999999998754 4
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
..+...|+++.|+.+|.. ..++.++..++++|.+|+...+....... .++++.|+.++. ++++.++..|+++|.
T Consensus 196 ~~i~~~g~l~~Ll~lL~~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~--~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNE---HTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIH--SNDEEVLTDACWALS 269 (528)
T ss_dssp HHHHHTTCHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTT--CCCHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 566688999999999953 26789999999999999976544333333 366999999998 568999999999999
Q ss_pred HhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
+|+..++.+ ..+++.|+++.|+.+|. +++..++..|+++|.+|+. .+..++.+.+.|+++.|+.+|.++ .+..++
T Consensus 270 ~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~ 346 (528)
T 4b8j_A 270 YLSDGTNDKIQAVIEAGVCPRLVELLL-HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN--LKKSIK 346 (528)
T ss_dssp HHTSSCHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC--CCHHHH
T ss_pred HHHcCCHHHHHHHHHcCHHHHHHHHHc-CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC--CcHHHH
Confidence 999876655 56778899999999996 5677899999999999987 577888888888999999999964 378999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
..|+++|.+++.. .+.....++. .|+++.|+.+++++++.++..|.++|.++...
T Consensus 347 ~~A~~~L~nl~~~-~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 347 KEACWTISNITAG-NKDQIQAVIN--AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999999974 4456677877 89999999999999999999999999999765
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=7.4e-28 Score=230.56 Aligned_cols=279 Identities=19% Similarity=0.196 Sum_probs=244.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL-YSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
.+.++.|+.+|++++++++..|+++|.+++..++.++..+.+.|++++|+.+| .+.++.++..|+++|.+++.+.+ ..
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 46899999999999999999999999999988888999999999999999999 56789999999999999998853 44
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++++.|+.+|.+ ++++++..++++|.+|+...+.+ ..+... |+++.|+.+|. +.++.++..|+++|.
T Consensus 239 ~~~~~~~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~v~~Lv~lL~--~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 239 FEQTRPALPALARLIHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLL--HPSPSVLIPALRTVG 311 (528)
T ss_dssp HHHHTTHHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-TCHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CHHHHHHHHHc--CCChhHHHHHHHHHH
Confidence 44468999999999987 68899999999999999765543 455554 66999999999 558899999999999
Q ss_pred HhccC-CCcHHHHHhhCCcHHHHHHHhcCC-CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 162 ~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
||+.. +..+..+++.|+++.|+.+|. ++ +..++..|+++|.||+. .++....+.+.|+++.|+.++.++ +..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v 387 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLT-QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA---EFDI 387 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS---CHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC---CHHH
Confidence 99984 456667888999999999997 45 77899999999999986 567788888889999999999986 8899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..|+++|.+++..+.+.....+++ .|+++.|+.++.++++.++..|..+|.++-.
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~--~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVS--EGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998755567788887 9999999999999999999999999888853
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=1.2e-27 Score=229.31 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=244.3
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.+.+|.|+++|+++ ++++|..|+++|.+++..+++.+..+++.|++|.|+.+|++.++.+++.|+++|.+++.+.. +
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46799999999997 89999999999999998888889999999999999999999999999999999999998753 4
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..+...|+++.|+.++.+ .+++++..++++|.+|+... +....... .++++.|+.++. ++++.++..|+++|
T Consensus 209 ~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~--~~d~~v~~~a~~~L 281 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIY--SMDTETLVDACWAI 281 (530)
T ss_dssp HHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 556688999999999997 67899999999999999754 44443333 366999999998 56889999999999
Q ss_pred HHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+|+... +....+++.|+++.|+.+|. +++..++..|+++|.+++. .+...+.+.+.|+++.|+.+|.++ +..+
T Consensus 282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v 357 (530)
T 1wa5_B 282 SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP---KENI 357 (530)
T ss_dssp HHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHH
T ss_pred HHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC---CHHH
Confidence 9999854 45677788899999999996 5677889999999999986 467777888888999999999976 7899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
++.|+++|.+++... +...+.++. .|+++.|+.+++++++.++..|+++|.++....
T Consensus 358 r~~A~~aL~~l~~~~-~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 358 KKEACWTISNITAGN-TEQIQAVID--ANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999998743 456677777 899999999999999999999999999997643
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.3e-28 Score=210.01 Aligned_cols=237 Identities=24% Similarity=0.298 Sum_probs=212.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~ 83 (315)
+.++.|+++|+++++++|..|+++|.+++..+++++..+.+.|+++.|+++|++.++.++..|+++|.+++.+. . +..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 36899999999999999999999999999888889999999999999999999999999999999999999984 3 456
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh-cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL-VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
+.+.|+++.|+.++++ ++++++..++++|.+|+ ..++++..+.+. |+++.|+.++. ++++.++..|+++|+|
T Consensus 82 ~~~~~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~--~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLT--STDSEVQKEAARALAN 154 (252)
T ss_dssp HHHTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTT--CSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 6799999999999997 68899999999999999 566778877775 55999999999 5689999999999999
Q ss_pred hccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 163 IALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 163 Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
|+... +.+..+++.|+++.|++++. +++..++..++++|.+|+. .+..++.+.+.|+++.|++++.++ ++.+++
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~ 230 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST---DSEVQK 230 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS---CHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC---cHHHHH
Confidence 99854 45578889999999999996 5678899999999999987 677888888999999999999976 889999
Q ss_pred HHHHHHHHHhccC
Q 021242 241 NAVSALLNLVNFG 253 (315)
Q Consensus 241 ~a~~~L~~l~~~~ 253 (315)
.|+++|.+++...
T Consensus 231 ~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 231 EAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998754
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=5.5e-27 Score=219.23 Aligned_cols=278 Identities=16% Similarity=0.141 Sum_probs=241.4
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.++.|++.|+++ ++++|..|+++|.+++..++++...+.+.|++|.|+.+|++.++.+++.|+++|.+++.+.. +.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999998 89999999999999998877888889999999999999999999999999999999998763 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
.+.+.|+++.|+.++++ ..+.+++..++++|.+|+... ..+..+. .+++|.|+.++. ++++.++..|+++|
T Consensus 144 ~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~--~~~~~v~~~a~~~L 216 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLF--VSDTDVLADACWAL 216 (450)
T ss_dssp HHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 56688999999999985 257899999999999999653 3333333 366999999999 56889999999999
Q ss_pred HHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+|+... +.+..+++.|+++.|++++. +++..++..|+++|.+++.. +..++.+.+.|+++.|+.++.++ ++.+
T Consensus 217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v 292 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP---KESI 292 (450)
T ss_dssp HHHTSSSHHHHHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS---SHHH
T ss_pred HHHHCCCcHHHHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC---CHHH
Confidence 9999854 56677788999999999996 56788999999999999875 55666778888899999999975 7899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+..++++|.+++.. .+...+.+++ .|+++.|+.+++++++.+|..|+++|.++...
T Consensus 293 r~~a~~~L~~l~~~-~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 293 KKEACWTISNITAG-NRAQIQTVID--ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHTTS-CHHHHHHHHH--TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999999864 3456677877 89999999999999999999999999999754
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=4.2e-27 Score=220.04 Aligned_cols=279 Identities=16% Similarity=0.169 Sum_probs=241.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCccc-c-h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITS-R-D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~-~-~ 81 (315)
.+.++.|+++|+++++++|..|+++|.+++..++.++..+.+.|+++.|+.++.+ .++.++..|+++|.+++.+. + .
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 5789999999999999999999999999998888899999999999999999985 68899999999999999765 2 2
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
......++++.|+.++++ ++++++..++++|.+|+... +....+... |+++.|+.++. +.++.++..|+++|
T Consensus 186 ~~~~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~--~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 186 EFAKVSPCLNVLSWLLFV----SDTDVLADACWALSYLSDGPNDKIQAVIDA-GVCRRLVELLM--HNDYKVVSPALRAV 258 (450)
T ss_dssp CGGGTGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSSHHHHHHHHHT-TTHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHCCCcHHHHHHHHc-CcHHHHHHHHC--CCchhHHHHHHHHH
Confidence 222237899999999997 67899999999999999754 445555554 66999999998 56889999999999
Q ss_pred HHhccCCCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYPLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+++...+. +..+++.|+++.|++++. +++..++..|+++|.+++. +++..+.+.+.++++.++.++.++ ++.+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~---~~~v 334 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA---EFRT 334 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS---CHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC---CHHH
Confidence 999986554 456778899999999996 5678899999999999986 677888888888999999999986 8899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..++++|.+++..+.++..+.+++ .|+++.|+.++++++++++..|.+.|.++..
T Consensus 335 ~~~a~~~L~~l~~~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 335 RKEAAWAITNATSGGSAEQIKYLVE--LGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHH--HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999997644556677777 8999999999999999999999999988864
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=1.8e-28 Score=212.41 Aligned_cols=236 Identities=19% Similarity=0.224 Sum_probs=209.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~ 82 (315)
...++.++.+|++++++.|..|+++|+++...++.++..+.+.|+||.|+.+|++.++.++..|+++|.+++.+. . +.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456899999999999999999999998776656788999999999999999999999999999999999999864 3 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+.+|++ ++++++..++++|.+|+..++++ ..+.+. |+++.|+.++. ++++.++..|+++|+
T Consensus 91 ~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~--~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALS 163 (252)
T ss_dssp HHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHHHHC-CCHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 66789999999999997 68899999999999999888877 667765 55999999999 568999999999999
Q ss_pred HhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
+|+..+ +++..+++.|+++.|++++. +++..+++.|+++|.+|+. .++.+..+.+.|+++.|+.++.++ ++.++
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~v~ 239 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE---NEKIQ 239 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS---SSHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC---CHHHH
Confidence 999854 56677888999999999996 5678899999999999985 678888899999999999999976 88999
Q ss_pred HHHHHHHHHHhc
Q 021242 240 ENAVSALLNLVN 251 (315)
Q Consensus 240 ~~a~~~L~~l~~ 251 (315)
+.|+++|.+|+.
T Consensus 240 ~~A~~~L~~l~~ 251 (252)
T 4db8_A 240 KEAQEALEKLQS 251 (252)
T ss_dssp HTHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=4.4e-27 Score=225.41 Aligned_cols=279 Identities=16% Similarity=0.141 Sum_probs=243.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~ 82 (315)
.+.++.|+++|++++++++..|+++|.+++..++.++..+.+.|+++.|+.++.+.++.++..|+++|.+++.+. . ..
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 467999999999999999999999999999888889999999999999999999999999999999999999875 3 33
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++++.|+.++.+ ++++++..++++|.+|+... +....+.+. |+++.|+.++. +.++.++..|+++|.
T Consensus 252 ~~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~Lv~lL~--~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLS--HESTLVQTPALRAVG 324 (530)
T ss_dssp HHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhc-CcHHHHHHHHC--CCChhhHHHHHHHHH
Confidence 44568899999999997 67899999999999999654 445555554 66999999999 568899999999999
Q ss_pred HhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
+|+... +....+++.|+++.|+.+|. +++..++..|+++|.+++. +++..+.+++.++++.|+.++.++ +..++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~ 400 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA---EYKTK 400 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS---CHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC---CHHHH
Confidence 999854 45566778899999999996 5677889999999999986 577778888889999999999976 88999
Q ss_pred HHHHHHHHHHhccCCH--HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 240 ENAVSALLNLVNFGGE--RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
..++++|.+++..+.+ +....+++ .|+++.|+.++.++++.++..|.++|.++..
T Consensus 401 ~~a~~aL~~l~~~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 401 KEACWAISNASSGGLQRPDIIRYLVS--QGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHH--TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999999986544 56677887 9999999999999999999999999988854
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=4.5e-27 Score=202.86 Aligned_cols=238 Identities=20% Similarity=0.247 Sum_probs=211.0
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CC
Q 021242 48 GSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DS 124 (315)
Q Consensus 48 g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~ 124 (315)
|+||.|+.+|++.+++++..|+++|.+++.+.. ...+.+.|+++.|+.+|++ ++++++..++++|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChH
Confidence 679999999999999999999999999988764 4556789999999999997 6789999999999999976 67
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHH
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
++..+.+. |+++.|+.++. ++++.++..|+++|.+|+. +++++..+++.|+++.|++++. +++..++..++++|.
T Consensus 78 ~~~~~~~~-~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDA-GGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHT-THHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 78888775 55999999999 5689999999999999995 6778888999999999999996 567889999999999
Q ss_pred HHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHH
Q 021242 204 QIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAK 282 (315)
Q Consensus 204 ~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~ 282 (315)
+|+. .+..++.+.+.|+++.|+.++.++ ++.++..++++|.+++.. .+..++.+++ .|+++.|+.+++++++.
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~~l~~--~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASG-PTSAIKAIVD--AGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTS-BHHHHHHHHH--TTHHHHHHHGGGCSCHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcC-CHHHHHHHHH--CCCHHHHHHHHCCCcHH
Confidence 9998 466668888888999999999975 889999999999999973 4556678887 99999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 021242 283 GKTKAVALLKILVDDGN 299 (315)
Q Consensus 283 ~k~~A~~~L~~l~~~~~ 299 (315)
+++.|.++|.++.....
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999987543
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=3.5e-27 Score=225.14 Aligned_cols=283 Identities=20% Similarity=0.184 Sum_probs=238.0
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.+.++.|++.|.++ +++.+..|+.+|.+++.. ++++..+.+.|+||.|+++|++.++.++..|+++|.+++.+++ +
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 36899999999755 899999999999999876 6699999999999999999999999999999999999998753 4
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..+.+.|+++.|++++++ ++++++..++.+|.+++. +++++..+.+.++ ++.|+.+++++ .+......++.+|
T Consensus 137 ~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~-i~~L~~ll~~~-~~~~~~~~a~~~L 210 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTY-TYEKLLWTTSRVL 210 (529)
T ss_dssp HHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC-HHHHHHHHHhC-ChHHHHHHHHHHH
Confidence 566689999999999997 678889899999999996 5677888887655 99999999863 4556777899999
Q ss_pred HHhccCCCcHHHHHhhCCcHHHHHHHhc--------------------------------------CCCcchHHHHHHHH
Q 021242 161 FGIALYPLNRYQVIALGGVQPLFSLVVN--------------------------------------GGRAGIVEDASAVI 202 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~~g~v~~L~~lL~~--------------------------------------~~~~~~~~~a~~~L 202 (315)
++|+.+++++..+++.|+++.|++++.+ +++..+++.++++|
T Consensus 211 ~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp HHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988888777766532 23456677788888
Q ss_pred HHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH--HHHHHHHHHccCcHHHHHHHHhhC
Q 021242 203 AQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE--RAAEEVKEMAMQVADGIADVAQNG 279 (315)
Q Consensus 203 ~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~~~L~~ll~~~ 279 (315)
.+|+.. +++++.+.+.|+++.|++++... ..++.+++.++.+|.+++....+ ..+..+++ .|+++.|+.+++++
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~--~~~i~~L~~lL~~~ 367 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPP 367 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH--TTCHHHHHHTTSTT
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHcc-CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH--cCChhHHHHHhccc
Confidence 888774 67899999999999999999863 12478999999999999875332 24567777 89999999999987
Q ss_pred C-HHHHHHHHHHHHHHhhC
Q 021242 280 S-AKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 ~-~~~k~~A~~~L~~l~~~ 297 (315)
+ +.+++.|+++|.++..+
T Consensus 368 ~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 368 SHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 5 69999999999999864
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=3.5e-26 Score=218.25 Aligned_cols=284 Identities=16% Similarity=0.170 Sum_probs=235.1
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~ 80 (315)
...+.++.|+.+|+++++.+|..|+..|.+++.+ +.++..+.. .|+++.|+++|.+. +++++..|+.+|.+++.+++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 4567899999999999999999999999999976 567777776 59999999999754 89999999999999998865
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
+..+.+.|+++.|+.+|++ ++++++..++++|.+|+.. ++.+..+.+. |++|.|+.++. +++++++..++.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~--~~~~~~~~~~~~ 165 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITTD 165 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGG--CCCHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHHHHc-CCHHHHHHHHh--cCCHHHHHHHHH
Confidence 4456688999999999997 6789999999999999975 4567777665 55999999999 568899999999
Q ss_pred HHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC-----
Q 021242 159 ALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT----- 232 (315)
Q Consensus 159 aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~----- 232 (315)
+|.+++. +++++..+++.|+++.|++++.+.......+.++.+|.+|+.+++++..+.+.|+++.|+.++.+++
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~ 245 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHH
Confidence 9999998 4678888999999999999997544445677789999999999999999988887777766654320
Q ss_pred -------------------------------CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-C-
Q 021242 233 -------------------------------GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-G- 279 (315)
Q Consensus 233 -------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~- 279 (315)
..++.+++.++++|++++..+ ++.+..+.+ .|+++.|+.++.+ +
T Consensus 246 ~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~--~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQ--VGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHHHHH--TTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH--cCChHHHHHHHHccCC
Confidence 126678888888899987643 456677877 8999999999986 3
Q ss_pred CHHHHHHHHHHHHHHhhC
Q 021242 280 SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 ~~~~k~~A~~~L~~l~~~ 297 (315)
++.++..|..+|.++...
T Consensus 323 ~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 323 REDITEPAICALRHLTSR 340 (529)
T ss_dssp CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 489999999999999653
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=223.75 Aligned_cols=282 Identities=20% Similarity=0.189 Sum_probs=236.7
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.++.|++.|.++ +++.+..|+.+|.+++.. ++++..+.+.|+||.|+.+|++.++.++..|+++|.+++.+.+ +.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 6799999999875 899999999999999976 5699999999999999999999999999999999999998753 44
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+++|++ ++++.+..++.+|.+|+. .++++..+.+.++ ++.|+.+++++ .....+..++.+|+
T Consensus 135 ~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~-v~~Lv~lL~~~-~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTY-TYEKLLWTTSRVLK 208 (644)
T ss_dssp HHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCC-hHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 56689999999999997 577888888899999996 6778888888655 99999999853 45677889999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhc--------------------------------------CCCcchHHHHHHHHH
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVN--------------------------------------GGRAGIVEDASAVIA 203 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~--------------------------------------~~~~~~~~~a~~~L~ 203 (315)
||+.+++++..+++.|+++.|++++.+ +++..+++.++++|.
T Consensus 209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999988887766532 234556777888888
Q ss_pred HHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-H-HHHHHHHHccCcHHHHHHHHhhCC
Q 021242 204 QIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-R-AAEEVKEMAMQVADGIADVAQNGS 280 (315)
Q Consensus 204 ~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~i~~~~~g~~~~L~~ll~~~~ 280 (315)
+|+.. +++++.+.+.|+++.|+.++... .....+++.++++|.+|+....+ . .+..++. .|+++.|+.++++++
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~--~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH--TTHHHHHHHTTSTTC
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--ccChHHHHHHhCccC
Confidence 88774 57888899989999999999863 11379999999999999864332 2 2344666 899999999999874
Q ss_pred -HHHHHHHHHHHHHHhhC
Q 021242 281 -AKGKTKAVALLKILVDD 297 (315)
Q Consensus 281 -~~~k~~A~~~L~~l~~~ 297 (315)
+.+++.|+++|.++..+
T Consensus 366 ~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLALC 383 (644)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHccC
Confidence 79999999999999764
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.8e-26 Score=199.73 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=207.0
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD 123 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~ 123 (315)
....+.++++|++++++++..|+++|.++.... + ...+.+.|+++.|+.+|++ ++++++..++++|.+|+. .+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCH
Confidence 456899999999999999999999997765543 3 4456789999999999997 678999999999999997 66
Q ss_pred CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
+++..+.+. |+++.|+.++. ++++.++..|+++|.||+.+++++ ..+++.|+++.|+++|. +++..++..++++|
T Consensus 87 ~~~~~i~~~-g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L 162 (252)
T 4db8_A 87 EQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWAL 162 (252)
T ss_dssp HHHHHHHHT-THHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 788888876 55999999999 568999999999999999999888 78889999999999996 56788999999999
Q ss_pred HHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 203 AQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 203 ~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
.+|+. .++.+..+.+.|+++.|+.++.++ ++.+++.++++|.+++.. .+..+..+++ .|+++.|+.+++++++
T Consensus 163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~~~~~--~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 163 SNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASG-GNEQKQAVKE--AGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTS-CHHHHHHHHH--TTHHHHHHTTTTCSSS
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcC-CHHHHHHHHH--CCcHHHHHHHhCCCCH
Confidence 99998 567788888899999999999976 899999999999999864 3456678887 9999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 021242 282 KGKTKAVALLKILV 295 (315)
Q Consensus 282 ~~k~~A~~~L~~l~ 295 (315)
.+++.|.++|.++.
T Consensus 237 ~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 237 KIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.2e-25 Score=220.35 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=236.3
Q ss_pred hhhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCccc
Q 021242 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSS-SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~ 79 (315)
+...+.++.|+.+|+++++.+|..|+.+|.+++.++ .++..+.. .|+++.|+++|.+. +++++..|+.+|.+++.+.
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 345678999999999999999999999999999775 57777776 49999999999865 8899999999999999886
Q ss_pred c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 80 R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 80 ~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
+ +..+.+.|+++.|+.+|++ ++++++..|+++|.+|+.. ++.+..+.+. |+++.|+.+++ ++++.++..++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~-g~i~~Lv~lL~--~~~~~~~~~a~ 161 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITT 161 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHT-THHHHHHHGGG--CCCHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHC-CChHHHHHHHC--cCCHHHHHHHH
Confidence 5 4456688999999999997 6789999999999999975 4556666665 55999999999 55788888899
Q ss_pred HHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC----
Q 021242 158 KALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT---- 232 (315)
Q Consensus 158 ~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~---- 232 (315)
.+|.+|+. +++++..+++.|+++.|++++.+......++.++.+|.+|+.+++++..+++.|+++.|+.++..++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999997 6788999999999999999997433456678899999999999999999998887777766554320
Q ss_pred --------------------------------CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-C
Q 021242 233 --------------------------------GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-G 279 (315)
Q Consensus 233 --------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~ 279 (315)
..+..+++.++++|.+|+..+ +..+..+.+ .|+++.|+.++.+ +
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~v~~--~g~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQ--VGGIEALVRTVLRAG 318 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHH--TTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHH--cCCHHHHHHHHHccC
Confidence 125677888888888887643 456677777 8999999999987 3
Q ss_pred C-HHHHHHHHHHHHHHhh
Q 021242 280 S-AKGKTKAVALLKILVD 296 (315)
Q Consensus 280 ~-~~~k~~A~~~L~~l~~ 296 (315)
+ +.++..|..+|.++..
T Consensus 319 ~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 319 DREDITEPAICALRHLTS 336 (644)
T ss_dssp TCHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHhc
Confidence 3 8999999999999974
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=198.38 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=172.6
Q ss_pred hhhHHHHHHHhCCCCH--HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-
Q 021242 5 RRTVRSLVTKLGSVSE--QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~- 80 (315)
+..+|.+|++|+++++ +.|..|+++|.+++..++++|..+++.|+||+|+++|++.++++|+.|+++|+|++.++ +
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 5689999999999988 89999999999999888999999999999999999999999999999999999999864 4
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc--------------
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-------------- 146 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-------------- 146 (315)
+..+.+.|+||.|+++|++ .++.++++.++.+|++|+..+++|..|.+ +| +|+|++++..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~---~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~-i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQ---TRDLETKKQITGLLWNLSSNDKLKNLMIT-EA-LLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HH-HHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcChhhHHHHHh-cc-HHHHHHHHhccccCCcccccccccc
Confidence 4567799999999999984 25789999999999999999999998887 46 99999865310
Q ss_pred CCChHHHHHHHHHHHHhcc-CCCcHHHHHhh-CCcHHHHHHHhcC-----CCcchHHHHHHHHHHHhcC
Q 021242 147 NSPLRSVKDALKALFGIAL-YPLNRYQVIAL-GGVQPLFSLVVNG-----GRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~-g~v~~L~~lL~~~-----~~~~~~~~a~~~L~~L~~~ 208 (315)
..++.++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++.. ++...+|.|+++|+|||..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1256899999999999998 55899999886 6789999999641 2456789999999999863
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=6.7e-26 Score=193.31 Aligned_cols=197 Identities=13% Similarity=0.170 Sum_probs=168.1
Q ss_pred CHHHHHHHHcCCCH--HHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC
Q 021242 49 SIPYLAEILYSSSH--AFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD 123 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~--~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~ 123 (315)
.||.|+++|+++++ +++..|+++|.+++.+++ +..+.+.|+||.|+++|++ +++++++.|+++|+||+. ++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCH
Confidence 48999999999888 899999999999998753 4567799999999999997 789999999999999997 67
Q ss_pred CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHh----cC----------
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV----NG---------- 189 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~----~~---------- 189 (315)
+++..|.+.|| ||+|+++|.+ .++..+++.|+.+||||+..+++|..+++ +++++|++++. ..
T Consensus 85 ~nk~~I~~~Ga-I~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 85 DNKLEVAELNG-VPRLLQVLKQ-TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHHTTH-HHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHHcCC-HHHHHHHHcc-CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccc
Confidence 89999998755 9999999984 35789999999999999999999999886 46999987652 00
Q ss_pred -CCcchHHHHHHHHHHHhc-ChhhHHHHHhcCC-HHHHHHHhhcC---CCCChhHHHHHHHHHHHHhcc
Q 021242 190 -GRAGIVEDASAVIAQIAG-CEESVDEFKKCCG-IGVLVDLLDLG---TGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 190 -~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~-i~~Lv~ll~~~---~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.+..+++.|.++|+||+. ++++|+.+.+.+| |+.|+.+++.+ ...+.+.+|+|+++|+|||..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 134678999999999987 6799999998866 89999999863 234678999999999999863
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=2.8e-24 Score=214.72 Aligned_cols=281 Identities=18% Similarity=0.185 Sum_probs=235.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
.+.++.|+.+|.++++..+..|+++|.+++..... .....+++|.|+.+|++.++.+++.|+++|.+++.++. +.
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45689999999999999999999999999966432 11235789999999999999999999999999999863 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc----hhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY----RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
.+.+.|+++.|+.+|.+. ....+++..++++|.+|+..... +..+...++ ++.|+.+|.++ .++.++..|++
T Consensus 436 ~i~~~g~i~~Lv~lL~~~--~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~-l~~L~~lL~~~-~~~~v~~~A~~ 511 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRA--GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG-LPVVVKLLHPP-SHWPLIKATVG 511 (780)
T ss_dssp HHHTTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC-HHHHHHTTSTT-CCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC-HHHHHHHhcCC-ChHHHHHHHHH
Confidence 566899999999999752 12358899999999999864332 445666545 99999999842 33589999999
Q ss_pred HHHHhccCCCcHHHHHhhCCcHHHHHHHhcCC---------------------CcchHHHHHHHHHHHhcChhhHHHHHh
Q 021242 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGG---------------------RAGIVEDASAVIAQIAGCEESVDEFKK 217 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~---------------------~~~~~~~a~~~L~~L~~~~~~~~~i~~ 217 (315)
+|+||+.+++++..+++.|+++.|+++|.+.. ...+++.++++|.+|+.+++++..+.+
T Consensus 512 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~ 591 (780)
T 2z6g_A 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591 (780)
T ss_dssp HHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999888888889999999999996311 124567899999999999999999999
Q ss_pred cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 218 CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 218 ~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.|+++.|+.++.++ ++.++..++.+|.+++.. +..+..+.+ .|+++.|..+++++++.+|+.|.++|.++...
T Consensus 592 ~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~--~~~~~~i~~--~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 592 LNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD--KEAAEAIEA--EGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp TCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTS--HHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcC--HHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999986 889999999999999853 456667776 99999999999999999999999999999886
Q ss_pred CC
Q 021242 298 GN 299 (315)
Q Consensus 298 ~~ 299 (315)
..
T Consensus 665 ~~ 666 (780)
T 2z6g_A 665 KP 666 (780)
T ss_dssp SC
T ss_pred Ch
Confidence 54
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=1.8e-24 Score=216.09 Aligned_cols=276 Identities=16% Similarity=0.177 Sum_probs=236.3
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc-h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~-~ 81 (315)
.+.++.|+.+|.++++.+|..|+.+|.+++.+ ..++..+.+ .|+|+.|+.+|++. ++.++..|+.+|.+++.+.. +
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 56899999999999999999999999999976 467777776 48999999999764 89999999999999998865 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..+.+.|+++.|+.+|++ +++.++..|+++|.+|+.. ++.+..+.+. |+++.|+.++. ..+..++..++.+|
T Consensus 228 ~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~-g~v~~Lv~lL~--~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITTDCL 300 (780)
T ss_dssp HHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHSTTHHHHHHHT-THHHHHHHGGG--CCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCChhhHHHHHHc-CCHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 455678999999999997 6789999999999999975 5566666665 55999999999 56888889999999
Q ss_pred HHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 161 FGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 161 ~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
.+++. +++++..+++.|+++.|++++.+.......+.++.+|.+|+.++.++..+++.|+++.|+.++.++ +..++
T Consensus 301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~---~~~~~ 377 (780)
T 2z6g_A 301 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---SQRLV 377 (780)
T ss_dssp HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS---CHHHH
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC---chHHH
Confidence 99997 567888899999999999999743334456779999999999999999999999999999999875 78899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+.++++|.+++...... ... .++++.|+.++.+.++.++..|+++|.+|...
T Consensus 378 ~~a~~~L~~L~~~~~~~----~~~--~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQ----EGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHHTTCTTC----SCC--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhccchhh----hhh--hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999754321 112 56899999999999999999999999999764
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=4.1e-24 Score=179.97 Aligned_cols=195 Identities=18% Similarity=0.228 Sum_probs=172.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
....+.|+.+|+++++++|..|+++|.+++..+++++..+.+.|++|.|+++|++.++.+++.|+++|.|++.+++ +.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4567899999999999999999999999998888999999999999999999999999999999999999997653 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+.+|++ +++.++..++++|.+|+.. ++.+..+.+. |+++.|+.++. ++++.++..|+++|+
T Consensus 91 ~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~--~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 91 AVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALS 163 (210)
T ss_dssp HHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CcHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 56799999999999997 6889999999999999964 4455566664 56999999999 568999999999999
Q ss_pred HhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 162 ~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
||+.+ ++++..+++.|+++.|++++. +++..+++.|+++|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 99996 677788889999999999996 5778899999999999975
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.4e-24 Score=208.16 Aligned_cols=285 Identities=14% Similarity=0.130 Sum_probs=229.7
Q ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCch--------------------------------------hhHHHHh
Q 021242 6 RTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAE--------------------------------------IRPMISE 46 (315)
Q Consensus 6 ~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~i~~ 46 (315)
..++.|+++++. .+......++..|.|++...+. +++.+.+
T Consensus 376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e 455 (778)
T 3opb_A 376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455 (778)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence 458889999985 6668999999999999863321 5678889
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
.|+||+|+.++++.++.+++.|+++|.|++.+.+ +..+.+.|+++.|+.+|.+++.. ....+..|+.+|.+|+.+.+.
T Consensus 456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~-~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 456 TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI-GEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999999998865 45667999999999999873110 013789999999999976665
Q ss_pred hhhhhh--ccccHHHHHHHhhccCCC-----------h-HHHHHHHHHHHHhccCCC-----cHHHHHhh-CCcHHHHHH
Q 021242 126 RPIIGA--KRDIIHSLIEIIKTRNSP-----------L-RSVKDALKALFGIALYPL-----NRYQVIAL-GGVQPLFSL 185 (315)
Q Consensus 126 ~~~i~~--~~g~i~~Lv~ll~~~~~~-----------~-~~~~~a~~aL~~Ls~~~~-----~~~~i~~~-g~v~~L~~l 185 (315)
...+.. ..|+|++|+.+|....+. + --+.+|+.+|.||+..++ .+..+++. |+++.+..+
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 555531 126699999999821111 1 126789999999999874 37788885 999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHhcChhhH-HHHHhcC------CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 186 VVNGGRAGIVEDASAVIAQIAGCEESV-DEFKKCC------GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 186 L~~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~------~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
|. +++..++..|+++++||+.+++++ +.+.+.+ +++.|+.++..+ +..+|..|+++|.+++... +..+
T Consensus 615 L~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~---D~~~r~AAagALAnLts~~-~~ia 689 (778)
T 3opb_A 615 ML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS---DVESQRAVAAIFANIATTI-PLIA 689 (778)
T ss_dssp GG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred Hh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCC-hHHH
Confidence 97 457788999999999999998876 4554322 488999999875 8999999999999997533 4577
Q ss_pred HHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHHHHHhhC
Q 021242 259 EEVKEMAMQVADGIADVAQN--GSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 259 ~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l~~~ 297 (315)
+.+++ ..++++.++.+++. +++.++..+..++.++.+.
T Consensus 690 ~~ll~-~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 690 KELLT-KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHTT-CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 88887 24899999999999 8999999999999999974
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=5e-23 Score=173.28 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=171.9
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
..++.+.|..+|++ ++++++..|+++|.+|+. .++++..+.+. |+++.|+.+|. ++++.++..|+++|.||+
T Consensus 10 ~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 10 HGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTT--CSCHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 46788999999997 789999999999999994 56677777775 55999999999 568999999999999999
Q ss_pred c-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 165 L-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 165 ~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
. +++++..+++.|+++.|+.+|. +++..+++.|+++|.||+. .++.++.+.+.|+++.|+++++++ +..+++.+
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a 158 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEA 158 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHH
Confidence 6 5678888999999999999996 5678899999999999996 567778888899999999999976 88999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+++|.+++..+ +..+..+.+ .|+++.|+.+++++++.+++.|.++|.+|..
T Consensus 159 ~~aL~~l~~~~-~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 159 LWALSNIASGG-NEQKQAVKE--AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTSC-HHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCC-cHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999744 456677777 9999999999999999999999999999864
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=4.3e-21 Score=170.05 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=184.7
Q ss_pred HHHHHHHhCCC------------CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHh
Q 021242 8 VRSLVTKLGSV------------SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAE-ILYSSSHAFQENAAATLLN 74 (315)
Q Consensus 8 i~~Lv~~L~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~ 74 (315)
++..++.|.++ +.+.+..|+..|..++.. .++...+.+.|++|+|+. +|+++++.+++.|+++|.+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45666777664 236899999999999965 678888999999999999 9999999999999999999
Q ss_pred cCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChH
Q 021242 75 LSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151 (315)
Q Consensus 75 la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 151 (315)
++.+++ +..+.+.|+++.|+.+|++ ..++.++..|+++|.+|+. +++....+.+.+| ++.|+.+|+ ++++.
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg-i~~L~~lL~--~~d~~ 182 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDG-FSVLMRAMQ--QQVQK 182 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHH--SSCHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC-HHHHHHHHc--CCCHH
Confidence 998864 4567799999999999986 1468899999999999996 4455666776555 999999999 56999
Q ss_pred HHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcC-CHHHH----
Q 021242 152 SVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCC-GIGVL---- 224 (315)
Q Consensus 152 ~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~L---- 224 (315)
++..|+++|.+|+. +++.+..+++.|+++.|+.+|. +++..+++.++.+|.+|+.. +..+..+.... .+..+
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~-~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT-SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc-CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 99999999999998 5678889999999999999996 57889999999999999876 44444443221 23222
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
.+.++.. ....+..+.+..++.+..
T Consensus 262 ~~~lq~~-e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 262 CQLLQQH-EEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHTTC-GGGHHHHHHHHHHHHHHC
T ss_pred HHHccch-HHHHHHHHHHHHHHHHHc
Confidence 2333322 113566667777777664
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.1e-20 Score=181.77 Aligned_cols=277 Identities=11% Similarity=0.129 Sum_probs=219.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc---
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR--- 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~--- 80 (315)
.-.+.++++|..++.+.+..|++.|+-++.. ++.|..+++ .|+++.|++++++ .+..+.--++.+|.||+...+
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 3566788888888777799999999999865 788999998 5669999999985 677788889999999987421
Q ss_pred ------------------------------------h-hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC
Q 021242 81 ------------------------------------D-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123 (315)
Q Consensus 81 ------------------------------------~-~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~ 123 (315)
+ +.+.+.|+++.|+.++++ +++.+++.++++|.+|+..+
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSG
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCH
Confidence 1 245689999999999997 78899999999999999999
Q ss_pred CchhhhhhccccHHHHHHHhhccCCChH---HHHHHHHHHHHhccCCCcHHHHH--h-hCCcHHHHHHHhcCCCcc----
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLR---SVKDALKALFGIALYPLNRYQVI--A-LGGVQPLFSLVVNGGRAG---- 193 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~---~~~~a~~aL~~Ls~~~~~~~~i~--~-~g~v~~L~~lL~~~~~~~---- 193 (315)
++|..+.+.|| +++|+.++.+ ++.. .+..|+.+|.+|..+.+....+- . .|++++|+.+|..++...
T Consensus 489 ~~R~~lvqqGa-l~~LL~lL~s--~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 489 NFIPQLAQQGA-VKIILEYLAN--KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp GGHHHHHHTTH-HHHHHHHTTC--C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred HHHHHHHHCCC-HHHHHHHHhc--CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 99999998655 9999999984 4333 78899999999997555444321 1 399999999995222211
Q ss_pred --------h-HHHHHHHHHHHhcCh-----hhHHHHHhc-CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 194 --------I-VEDASAVIAQIAGCE-----ESVDEFKKC-CGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 194 --------~-~~~a~~~L~~L~~~~-----~~~~~i~~~-~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
. +..|+.+|.||+..+ +.|+.++.+ |+++.+..+|.++ +..++..|+++++||+.+. ...
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~---n~~VrrAA~elI~NL~~~~--e~i 640 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE---NVPLQRSTLELISNMMSHP--LTI 640 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHTSG--GGT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC---CHHHHHHHHHHHHHHhCCc--HHH
Confidence 1 567999999999875 457888885 8899999999875 8899999999999999642 221
Q ss_pred -HHHHHH----ccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 259 -EEVKEM----AMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 259 -~~i~~~----~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+++... ..+.++.|+.+++++++.+|+.|+++|.++.
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 233210 0234889999999999999999999999995
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=7.2e-21 Score=168.59 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHH-HhhccCCChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHH
Q 021242 106 SAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIE-IIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLF 183 (315)
Q Consensus 106 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~ 183 (315)
.+.+..|+..|.++....++...+...|| +|+|+. +|. ++++.++..|+++|.+++.+ ++.+..+++.|++|.|+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~-l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSG-MHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTH-HHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCC-HHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 45677899999999987778887877656 899999 999 56899999999999999985 56778889999999999
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 184 SLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 184 ~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
++|.++++..+++.|+++|+|++. .+...+.|.+.||++.|+.+|+++ +..++..++++|.+++..+ ++.+..++
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~-~~~~~~vv 206 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGH-PEHKGTLC 206 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCC-hHHHHHHH
Confidence 999754567889999999999987 577788899999999999999986 8999999999999999764 45668888
Q ss_pred HHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 263 EMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 263 ~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+ .|+++.|+.++.++++.+++.|..+|.++...
T Consensus 207 ~--~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 S--MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp H--TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred H--cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 8 99999999999999999999999999888765
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.58 E-value=3.3e-13 Score=128.39 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=210.9
Q ss_pred hhhhhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCch-----------------hhHHHH-hCCCHHHHHHHHcCCC
Q 021242 2 EVKRRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAE-----------------IRPMIS-EAGSIPYLAEILYSSS 61 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~-~~g~i~~Lv~lL~~~~ 61 (315)
+|-..+++.|+.-|+.. |.++...++++|.++...++. +.+.+. +.+.|+.|+.+|++.+
T Consensus 56 ~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d 135 (651)
T 3grl_A 56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135 (651)
T ss_dssp HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC
T ss_pred HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc
Confidence 34566789999999754 789999999999887544322 223444 4788999999999999
Q ss_pred HHHHHHHHHHHHhcCcccc---hh-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHH
Q 021242 62 HAFQENAAATLLNLSITSR---DS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIH 137 (315)
Q Consensus 62 ~~~~~~a~~~L~~la~~~~---~~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~ 137 (315)
..++.+++..|..++.+.+ .+ ++..++|++.|+.+|.+ .++.++..+...|.+|+.....-..+...+|+++
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d----~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe 211 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD----SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFE 211 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHH
Confidence 9999999999999988763 23 34477999999999997 6778888999999999986665554555556699
Q ss_pred HHHHHhhccCC--ChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCc-c----hHHH---HHHHHHHHh
Q 021242 138 SLIEIIKTRNS--PLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRA-G----IVED---ASAVIAQIA 206 (315)
Q Consensus 138 ~Lv~ll~~~~~--~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~-~----~~~~---a~~~L~~L~ 206 (315)
.|++++....+ .-.+...|+..|.||.++ +.|+..+.+.|.++.|..+|...++. . .... ++.+++-|.
T Consensus 212 ~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv 291 (651)
T 3grl_A 212 RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV 291 (651)
T ss_dssp HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh
Confidence 99999985311 125678999999999995 45888899999999999999532211 1 1222 666777775
Q ss_pred cC-------hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccC---------cHH
Q 021242 207 GC-------EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ---------VAD 270 (315)
Q Consensus 207 ~~-------~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g---------~~~ 270 (315)
.. +.+...+.+.|+++.+++++... .....++..|+.++..+.+.+ ......+.+ .. ++.
T Consensus 292 ~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~-~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~--~~vp~~~~~p~li~ 367 (651)
T 3grl_A 292 SPNNPPGATSSCQKAMFQCGLLQQLCTILMAT-GVPADILTETINTVSEVIRGC-QVNQDYFAS--VNAPSNPPRPAIVV 367 (651)
T ss_dssp CTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS-SCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH--CEESSSSCEEHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHHhCC-HHHHHHHhh--ccCCCCCCcChHHH
Confidence 43 24677888889999999988753 346789999999999998744 445455554 22 233
Q ss_pred HHHHHHhh-CCHHHHHHHHHHHHHHh
Q 021242 271 GIADVAQN-GSAKGKTKAVALLKILV 295 (315)
Q Consensus 271 ~L~~ll~~-~~~~~k~~A~~~L~~l~ 295 (315)
.|+.++.+ ....+|-.|+..++++-
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHH
Confidence 34444544 46788888888888775
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.58 E-value=2.8e-13 Score=128.89 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=210.7
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCccc-
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITS- 79 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~- 79 (315)
-..+|+.|...++++ -.+-|+.|+..|..+++. ++..+. .++++.|+..|+. .|.++...++.+|.++...+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 356899999999866 579999999999999854 454544 5669999999976 57788899999997754332
Q ss_pred c-h------------------hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-C-chhhhhhccccHHH
Q 021242 80 R-D------------------SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-S-YRPIIGAKRDIIHS 138 (315)
Q Consensus 80 ~-~------------------~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~-~~~~i~~~~g~i~~ 138 (315)
. . ..+.+.+.++.|+.+|+. .+..++..+...|..|+... + ....|....+.|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~ 170 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSR 170 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHH
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHH
Confidence 1 0 123578899999999996 68889999999999999644 3 56677755444999
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCC---CcchHHHHHHHHHHHhc-ChhhHH
Q 021242 139 LIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGG---RAGIVEDASAVIAQIAG-CEESVD 213 (315)
Q Consensus 139 Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~---~~~~~~~a~~~L~~L~~-~~~~~~ 213 (315)
|+.+|. +....++-.|+..|.+|+.+..+..+++. .|+++.|+.++..++ ...+.+.|+.+|.||.. ++.+..
T Consensus 171 Lv~lL~--d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~ 248 (651)
T 3grl_A 171 LMDLLA--DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248 (651)
T ss_dssp HHGGGG--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHh--CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence 999999 45778888999999999997777666665 699999999997533 12467889999999988 567888
Q ss_pred HHHhcCCHHHHHHHhhcCCCCCh---hHHHH---HHHHHHHHhccCC----H-HHHHHHHHHccCcHHHHHHHHhhC--C
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGH---RVKEN---AVSALLNLVNFGG----E-RAAEEVKEMAMQVADGIADVAQNG--S 280 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~---~~~~~---a~~~L~~l~~~~~----~-~~~~~i~~~~~g~~~~L~~ll~~~--~ 280 (315)
.|.+.++++.|..++..++.... ..-.+ +..++.-++..++ . .+...+.+ .|+++.|++++-+. +
T Consensus 249 ~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~--~g~l~~Ll~ll~~~~~p 326 (651)
T 3grl_A 249 FFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ--CGLLQQLCTILMATGVP 326 (651)
T ss_dssp HHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--TTHHHHHHHHHTCSSCC
T ss_pred HHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH--CCCHHHHHHHHccCCCC
Confidence 89999999999999986421111 11222 5555666655432 1 24456666 99999999998865 6
Q ss_pred HHHHHHHHHHHHHHh
Q 021242 281 AKGKTKAVALLKILV 295 (315)
Q Consensus 281 ~~~k~~A~~~L~~l~ 295 (315)
..++..|..++..+-
T Consensus 327 ~~i~~~Al~tla~~i 341 (651)
T 3grl_A 327 ADILTETINTVSEVI 341 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888877776653
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.46 E-value=7.7e-12 Score=109.43 Aligned_cols=229 Identities=12% Similarity=0.047 Sum_probs=166.9
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
++..++.|++.|.++++.+|..|+++|..+.. .++++.|+.+|.+.++.++..|+++|..+......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-- 87 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-- 87 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--
Confidence 45689999999999999999999999998862 23689999999999999999999999888643221
Q ss_pred hhhcCchHHHHH-HHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 84 MSTRGLLDAISH-VLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 84 i~~~~~i~~L~~-lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
+ ...++.|.+ ++.+ +++.++..++++|.++...... .. ..+++.|+..+. +.++.++..|+++|.+
T Consensus 88 ~--~~l~~~L~~~~~~d----~~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~--d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 88 E--DNVFNILNNMALND----KSACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAF--DKSTNVRRATAFAISV 154 (280)
T ss_dssp H--HHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTT--CSCHHHHHHHHHHHHT
T ss_pred c--hHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhh--CCCHHHHHHHHHHHHh
Confidence 0 013344443 3444 6789999999999998742210 11 245899999998 5689999999999998
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
+.. .++++.|++++. +++..++..++..|..+.... ...++.|+.++.+. +..++..+
T Consensus 155 ~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~---~~~vR~~A 212 (280)
T 1oyz_A 155 IND----------KATIPLLINLLK-DPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK---NEEVRIEA 212 (280)
T ss_dssp C-------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS---CHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC---CHHHHHHH
Confidence 753 258999999996 677888999999998874321 12467888888865 78999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+|..+.. ..+++.|..++++++ ++..|...|..+..
T Consensus 213 ~~aL~~~~~--------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 213 IIGLSYRKD--------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHTTC--------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHHHHHhCC--------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 999988741 234555555565533 66666666665543
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=1.2e-11 Score=103.64 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=154.8
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.+..++.|++.|+++++.+|..|+..|..+.. .++++.|+.+|.+.++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 46789999999999999999999999998753 356999999999999999999999998874
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
..+.++.|+.+|++ +++.++..++.+|..+.. ...++.|+.++. +.++.++..|+.+|.++
T Consensus 79 --~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 79 --DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK--DEDWFVRIAAAFALGEI 139 (211)
T ss_dssp --CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 35678999999987 688999999999988642 245899999998 56899999999999997
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
.. ..+++.|.+++. +++..++..++.+|..+.. ...++.|..++.++ ++.++..|.
T Consensus 140 ~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~---~~~vr~~A~ 195 (211)
T 3ltm_A 140 GD----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG---TGFARKVAV 195 (211)
T ss_dssp CC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC---CHHHHHHHH
Confidence 53 357889999995 6778889999999998732 22467788888875 889999999
Q ss_pred HHHHHHhcc
Q 021242 244 SALLNLVNF 252 (315)
Q Consensus 244 ~~L~~l~~~ 252 (315)
.+|..+...
T Consensus 196 ~aL~~~~~~ 204 (211)
T 3ltm_A 196 NYLETHKSF 204 (211)
T ss_dssp HHHHC----
T ss_pred HHHHhcCCC
Confidence 999998654
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=2.5e-11 Score=100.79 Aligned_cols=186 Identities=18% Similarity=0.146 Sum_probs=154.2
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.....+.+++.|+++++.+|..|+..|..+.. .+.++.|+++|.+.++.++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 45678899999999999999999999998753 246899999999999999999999998764
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....++.|+.+|.+ +++.++..++++|..+.. ...++.|+.++. +.++.++..|+++|..+
T Consensus 74 --~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 74 --DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK--DEDWFVRIAAAFALGEI 134 (201)
T ss_dssp --CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHh
Confidence 34678999999987 688999999999988632 234899999998 56899999999999987
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
.. .++++.|.+++. +++..++..|+.+|..+.. ...++.|..++.++ ++.++..+.
T Consensus 135 ~~----------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~---~~~vr~~A~ 190 (201)
T 3ltj_A 135 GD----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG---TGFARKVAV 190 (201)
T ss_dssp TC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC---CHHHHHHHH
Confidence 53 467889999995 5677889999999988732 12467888888875 889999999
Q ss_pred HHHHHHh
Q 021242 244 SALLNLV 250 (315)
Q Consensus 244 ~~L~~l~ 250 (315)
.+|..+-
T Consensus 191 ~aL~~l~ 197 (201)
T 3ltj_A 191 NYLETHK 197 (201)
T ss_dssp HHHHHCC
T ss_pred HHHHHHH
Confidence 9998873
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=1.8e-10 Score=96.33 Aligned_cols=189 Identities=18% Similarity=0.172 Sum_probs=151.9
Q ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 46 EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 46 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
..+.++.|+.+|++.++.++..|+..|..+. ..+.++.|+.+|.+ +++.++..++.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~---------~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---------DERAVEPLIKALKD----EDAWVRRAAADALGQIGD---- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------CGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHCC----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------CccHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC----
Confidence 3567999999999999999999999998764 35689999999997 688999999999988642
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
...++.|+.++. +.++.++..|+++|..+.. .++++.|++++. +++..++..++.+|..+
T Consensus 80 -------~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 -------ERAVEPLIKALK--DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEI 139 (211)
T ss_dssp -------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHc
Confidence 244899999998 5689999999999998753 357889999995 67888999999999987
Q ss_pred hcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHH
Q 021242 206 AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKT 285 (315)
Q Consensus 206 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~ 285 (315)
.. ...++.|..++.+. ++.++..++.+|..+. .+ .+++.|..+++++++.+|.
T Consensus 140 ~~----------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~---~~-----------~~~~~L~~~l~d~~~~vr~ 192 (211)
T 3ltm_A 140 GD----------ERAVEPLIKALKDE---DGWVRQSAADALGEIG---GE-----------RVRAAMEKLAETGTGFARK 192 (211)
T ss_dssp CC----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC---SH-----------HHHHHHHHHHHHCCHHHHH
T ss_pred CC----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhC---ch-----------hHHHHHHHHHhCCCHHHHH
Confidence 42 24688899999765 8899999999999983 11 1455677788899999999
Q ss_pred HHHHHHHHHhhCC
Q 021242 286 KAVALLKILVDDG 298 (315)
Q Consensus 286 ~A~~~L~~l~~~~ 298 (315)
.|...|..+....
T Consensus 193 ~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 193 VAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999887643
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=3e-10 Score=94.21 Aligned_cols=185 Identities=19% Similarity=0.183 Sum_probs=151.2
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.+..+.++++|++.++.++..|+.+|..+. ..+.++.|+.+|++ +++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---------~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG---------DERAVEPLIKALKD----EDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC---------CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC-----
Confidence 356889999999999999999999998764 34678999999986 688999999999887532
Q ss_pred hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
...++.|+.++. +.++.++..|+++|.++.. ..+++.|++++. +++..++..++.+|..+.
T Consensus 75 ------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALK--DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 234899999998 5689999999999998753 357888999995 677888999999998874
Q ss_pred cChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHH
Q 021242 207 GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 207 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~ 286 (315)
. ...++.|+.++.+. ++.++..++.+|..+. .+. +++.|..+++++++.+|..
T Consensus 136 ~----------~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~~---~~~-----------~~~~L~~~l~d~~~~vr~~ 188 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDE---DGWVRQSAADALGEIG---GER-----------VRAAMEKLAETGTGFARKV 188 (201)
T ss_dssp C----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC---SHH-----------HHHHHHHHHHHCCHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhC---chh-----------HHHHHHHHHhCCCHHHHHH
Confidence 2 34688899999865 8899999999999982 222 4556777888999999999
Q ss_pred HHHHHHHHh
Q 021242 287 AVALLKILV 295 (315)
Q Consensus 287 A~~~L~~l~ 295 (315)
|...|..+.
T Consensus 189 A~~aL~~l~ 197 (201)
T 3ltj_A 189 AVNYLETHK 197 (201)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999998775
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.27 E-value=1e-10 Score=117.80 Aligned_cols=276 Identities=14% Similarity=0.119 Sum_probs=189.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHH--HH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPM--IS--EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
..-++.|++.+.++++..+..|+.+|..+++..+..-.. +. -.+.+|.++.++++.++.+|..|+++|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 346789999999999999999999999998654322110 00 12357777777788899999999999988876543
Q ss_pred hhh-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSL-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
... ..-.+.++.++.++.+ ++++++..++++|..++...... ......++++.++.++. +.++.++..|+..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~~~-~~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQ--DQDENVALEACEF 279 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCHHH-HGGGHHHHHHHHHHHHT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHcc--CCcHHHHHHHHHH
Confidence 222 1123467888888876 68899999999999998633211 11111356888888888 5578899999999
Q ss_pred HHHhccCCCcHHHHHh--hCCcHHHHHHH----------hcC-----------CCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 160 LFGIALYPLNRYQVIA--LGGVQPLFSLV----------VNG-----------GRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~--~g~v~~L~~lL----------~~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
+..++..+..+..+-. ...+|.++..+ ..+ .+-.++..+..+|..++.... +.+.
T Consensus 280 l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~ 357 (852)
T 4fdd_A 280 WLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL 357 (852)
T ss_dssp HHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH
Confidence 9999876544432211 24456666665 122 122456778888888865321 1121
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
. ..++.+..++.+. +...|+.|+.+|.+++.... ......+ .++++.|+.++++.++.+|..|++.|..+.+
T Consensus 358 ~-~l~~~l~~~l~~~---~~~~R~aa~~alg~i~~~~~-~~~~~~l---~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 358 P-HILPLLKELLFHH---EWVVKESGILVLGAIAEGCM-QGMIPYL---PELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp H-HHHHHHHHHHTCS---SHHHHHHHHHHHHHTTTTTH-HHHGGGH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred H-HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcch-HHHHHHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 1 2356666777754 89999999999999986443 2212222 4688999999999999999999999988776
Q ss_pred C
Q 021242 297 D 297 (315)
Q Consensus 297 ~ 297 (315)
.
T Consensus 430 ~ 430 (852)
T 4fdd_A 430 W 430 (852)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.25 E-value=4.7e-10 Score=97.98 Aligned_cols=224 Identities=13% Similarity=0.012 Sum_probs=164.0
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHH-HHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLA-EILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..++.|+++|.++++.+|..|+++|..+...... .. ..++.|. .++++.++.++..++++|.++......
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-- 124 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-- 124 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--
Confidence 45789999999999999999999999988643221 11 1233444 245678899999999999888643211
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.....++.|+..+.+ +++.++..++.+|.++.. ...++.|+.++. +.++.++..|+++|..+
T Consensus 125 -~~~~~~~~L~~~l~d----~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 125 -YSPKIVEQSQITAFD----KSTNVRRATAFAISVIND-----------KATIPLLINLLK--DPNGDVRNWAAFAININ 186 (280)
T ss_dssp -GHHHHHHHHHHHTTC----SCHHHHHHHHHHHHTC--------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHhhC----CCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhh
Confidence 123467889999987 788999999999887542 235899999999 56889999999999988
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
.... ..+++.|+.++. +++..++..|+.+|..+. ....++.|+.++.++ .++..+.
T Consensus 187 ~~~~--------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~-----~vr~~a~ 242 (280)
T 1oyz_A 187 KYDN--------SDIRDCFVEMLQ-DKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN-----TVYDDII 242 (280)
T ss_dssp TCCC--------HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS-----SCCHHHH
T ss_pred ccCc--------HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc-----cHHHHHH
Confidence 5322 245688899985 567888999999998874 234689999999853 3777888
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHH
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLK 292 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~ 292 (315)
.+|..+.. ..+++.|..++++ .++.+...+...|+
T Consensus 243 ~aL~~i~~--------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 243 EAAGELGD--------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHCC--------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhcCc--------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 88877632 2367788888875 56777777766553
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.22 E-value=4.5e-11 Score=120.45 Aligned_cols=274 Identities=12% Similarity=0.057 Sum_probs=186.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
..++.+++.++++++++|..|+++|..+....+. .+.. .+.++.+..++.+.+++++..|+++|..++......+
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 3567778888889999999999999988865332 1211 3568889999999999999999999999887653221
Q ss_pred h-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh-ccccHHHHHHHhhc---------cC-----
Q 021242 84 M-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA-KRDIIHSLIEIIKT---------RN----- 147 (315)
Q Consensus 84 i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ll~~---------~~----- 147 (315)
. .-.+.++.++..+++ .+++++..|+.++..++.....+..+.. ...++|.++..+.. .+
T Consensus 251 ~~~l~~l~~~l~~~~~~----~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQD----QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp GGGHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHccC----CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1 112477888888886 6788999999999998865543332221 12446666666510 01
Q ss_pred ------CChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh-HHHHHhcCC
Q 021242 148 ------SPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES-VDEFKKCCG 220 (315)
Q Consensus 148 ------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~~ 220 (315)
.+..++..|..+|..++..... .++ ...++.+.+++. +++...++.|+.+|.+++..... ..... .+.
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~ 401 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIPYL-PEL 401 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHH
Confidence 1123567788888888763211 111 234666777775 46778889999999999874321 11111 235
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++.++..+.+. ++.++..+++++.+++....+....... .++++.|+..+++.++.+|..|++.|..+.+.
T Consensus 402 l~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~~---~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 402 IPHLIQCLSDK---KALVRSITCWTLSRYAHWVVSQPPDTYL---KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHTTCS---SHHHHHHHHHHHHHTHHHHHHSCTTTTH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 78888888764 8999999999999998532110001111 35778888888888999999999999888653
No 49
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.16 E-value=1.5e-10 Score=113.87 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=145.1
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHH-HHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLA-EILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
++..|.++++.|+|++++.|..|+.+|.+++. ++..++.+...|+|++++ .+|.+.+.++++.|+++|.||+.+..
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 45678899999999999999999999999996 688999999988888765 57888899999999999999998764
Q ss_pred -hhhhhhcCchHHHHHHHhcCCC-----C-----CC-------HHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHST-----S-----TS-------SAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIE 141 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~-----~-----~~-------~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ 141 (315)
...+...|++++|..+++.... . .. .++..+++.+|++|+. .++....+...++ ++.|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~-l~~l~~ 189 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT-ILRLLF 189 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH-HHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc-HHHHHH
Confidence 2445689999999998853100 0 00 1233467788999985 4455556666544 899999
Q ss_pred HhhccC-CChHHHHHHHHHHHHhccCCC-cHHHHHhhCCcHHHHHHHh-cCCCcchHHHHHHHHHHHh
Q 021242 142 IIKTRN-SPLRSVKDALKALFGIALYPL-NRYQVIALGGVQPLFSLVV-NGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 142 ll~~~~-~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~v~~L~~lL~-~~~~~~~~~~a~~~L~~L~ 206 (315)
.|...+ ...++...|+.+|+.++.+.. ....+.+.|....+..++. ...+...+..++++|.|+.
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 885322 246788999999999998543 4455555555433322221 1134455677889999863
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.16 E-value=1.3e-09 Score=104.46 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=180.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.-++.+.+.++++++.+|..|+.+|..++..-.. .......+|.+..++++.++.++..|+.+|..++..-.....
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~- 239 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL- 239 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH-
Confidence 3456666777888999999999999999865322 122356788999999888899999999999887754332211
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
....++.+..++.+ .+..++..++.+|..++...... .+. ..+++.++.++. +.++.++..|+.+|..++.
T Consensus 240 ~~~~~~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~~-~~~--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 240 EALVMPTLRQAAED----KSWRVRYMVADKFTELQKAVGPE-ITK--TDLVPAFQNLMK--DCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHTHHHHHHHHTC----SSHHHHHHHHHTHHHHHHHHCHH-HHH--HTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHhCcc-cch--hHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHH
Confidence 23467788888876 67889999999999987522111 122 245899999998 5688999999999999886
Q ss_pred C--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 166 Y--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 166 ~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
. ++.+........+|.+..++. +++..++..++.+|..++..-. .+.. ....+|.+..++++. ++.++..++
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d~---~~~Vr~~a~ 384 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKDE---CPEVRLNII 384 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTCS---CHHHHHHHH
T ss_pred HhChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCCC---chHHHHHHH
Confidence 3 333322233567788888885 5677888888888888764211 1111 123567888888764 788888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+|..++...+.. .. . ...+|.|..++++.+.++|..+...+..+.
T Consensus 385 ~~l~~l~~~~~~~---~~-~--~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 385 SNLDCVNEVIGIR---QL-S--QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp TTCHHHHHHSCHH---HH-H--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHH---HH-H--HHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 8887776543321 11 1 235566666666666677776666665554
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.16 E-value=3.4e-09 Score=101.52 Aligned_cols=264 Identities=12% Similarity=0.059 Sum_probs=173.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
++.|..++.+.++.+|..|..+|..++...+.. -...-.+|.+..+..+.+...|..|+.++..++..-.... ..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--~~ 163 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KA 163 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 444445556667778888888888777554321 1222345666666666667777777777777665432211 23
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
..++.+..++.+ +++.++..++.+|..++..-...... ..++|.+..++. ++++.++..|+.+|..++..-
T Consensus 164 ~l~~~l~~l~~d----~~~~VR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 164 ELRQYFRNLCSD----DTPMVRRAAASKLGEFAKVLELDNVK---SEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHHHHHHHHHTC----SCHHHHHHHHHHHHHHHHTSCHHHHH---HTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhcHHhHH---HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhC
Confidence 356777777776 68899999999999998543322221 356888888888 567889999999999887632
Q ss_pred CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 021242 168 LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALL 247 (315)
Q Consensus 168 ~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~ 247 (315)
.. .......+|.+.+++. +++..++..++.+|..++..-.. . ......++.++.++++. ++.++..++.+|.
T Consensus 235 ~~--~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 235 PQ--EDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKDC---EAEVRAAASHKVK 306 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTCS---SHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCCC---cHHHHHHHHHHHH
Confidence 21 1223456778888884 56677888899999888653111 1 12234578888998864 8899999999999
Q ss_pred HHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 248 NLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.++....+........ ...+|.+..++++.++.+|..|.+.|..+.
T Consensus 307 ~~~~~~~~~~~~~~~~--~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 307 EFCENLSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHTSCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHhChhhhhhHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9986543221111111 456677777777778888887777665553
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.11 E-value=1e-09 Score=102.07 Aligned_cols=276 Identities=11% Similarity=0.076 Sum_probs=183.6
Q ss_pred hhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc
Q 021242 5 RRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~ 79 (315)
..-++.|++.+.++ ++..+..|+.+|..++... +..-.... ..+++.++..+.+. ++.+|..|++++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999988 8999999999999998653 21111111 24678888999887 7899999999998865321
Q ss_pred c---hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhccCCChHHHH
Q 021242 80 R---DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 80 ~---~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
+ .........++.+...+.+ ++++++..++.+|..++.... ....+.. .+++.++..+. ..++.++.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~--~~~~~v~~ 277 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMK--SDIDEVAL 277 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHH--CSSHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc--CCchHHHH
Confidence 1 1111111135555555554 678899999999999985332 1222221 56888888887 56788999
Q ss_pred HHHHHHHHhccCC------------------CcHHHHHh---hCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhc
Q 021242 155 DALKALFGIALYP------------------LNRYQVIA---LGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 155 ~a~~aL~~Ls~~~------------------~~~~~i~~---~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~ 207 (315)
.|+..+..++... .....+++ ...+|.+++.+... .+..++..|..+|..|+.
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 9999888887532 00111111 34566667777421 123567788888888866
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.-. +.+. ...++.+...+.+. +...|+.++.++..++....+......+ ..++|.|+..+.+.++.+|..|
T Consensus 358 ~~~--~~~~-~~~~~~l~~~l~~~---~~~~r~aal~~l~~l~~~~~~~~~~~~l---~~~~~~l~~~l~d~~~~Vr~~a 428 (462)
T 1ibr_B 358 CCE--DDIV-PHVLPFIKEHIKNP---DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVVRDTA 428 (462)
T ss_dssp HTT--TTHH-HHHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCTTTTCTTT---TTHHHHHHHGGGCSCHHHHHHH
T ss_pred hcc--HHHH-HHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhcCCcHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHH
Confidence 311 1222 12356666677754 8899999999999998633211111111 5688999999999999999999
Q ss_pred HHHHHHHhhCC
Q 021242 288 VALLKILVDDG 298 (315)
Q Consensus 288 ~~~L~~l~~~~ 298 (315)
+++|..+....
T Consensus 429 ~~~l~~~~~~~ 439 (462)
T 1ibr_B 429 AWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHhc
Confidence 99999997743
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.10 E-value=5.9e-09 Score=100.87 Aligned_cols=261 Identities=16% Similarity=0.070 Sum_probs=175.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh--h
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS--L 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~--~ 83 (315)
.-++.+.+.|.++++.+|.+|+.++..+...+++ .+.+.+.++.|..+|.+.++.++..|+.+|..++.++... .
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 3456788999999999999999999999876554 3344688999999999999999999999999998775422 2
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....+.+..|+..+.. .++-.+.....++..+...++ .. ...+++.+..+++ +.++.++..|++++..+
T Consensus 198 ~l~~~~~~~Ll~~l~~----~~~~~q~~il~~l~~l~~~~~--~~---~~~~l~~l~~~l~--~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 198 DLNPQNINKLLTALNE----CTEWGQIFILDCLSNYNPKDD--RE---AQSICERVTPRLS--HANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHTSCCCSH--HH---HHHHHHHHTTCSC--SSTTHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHcCCC----CCchHHHHHHHHHHHhCCCCh--HH---HHHHHHHHHHHHc--CCChHHHHHHHHHHHHH
Confidence 2234567778888775 566777767777666553221 11 1245788888888 55789999999999998
Q ss_pred cc----CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-Ch------------------hhHHHHH----
Q 021242 164 AL----YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CE------------------ESVDEFK---- 216 (315)
Q Consensus 164 s~----~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~------------------~~~~~i~---- 216 (315)
.. +++....+ -..+.+.|+.++. ++..++..++..|..+.. .+ ..|..-.
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 267 LELLPKDSDYYNML-LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp CCSCCBTTBSHHHH-HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHH-HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 74 33443333 2455677776653 567778888888877653 11 0111111
Q ss_pred ---hcCCHH----HHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 217 ---KCCGIG----VLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 217 ---~~~~i~----~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
+...+. .|..++.+. +..++..+++++..++...++. . ...++.|+.+++..++.++..+..
T Consensus 344 ~l~~~~nv~~iv~~L~~~l~~~---d~~~r~~~v~aI~~la~~~~~~------~--~~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 344 RLASQANIAQVLAELKEYATEV---DVDFVRKAVRAIGRCAIKVEQS------A--ERCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp HTCCSSTHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTCHHH------H--HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhChhH------H--HHHHHHHHHHHcccchHHHHHHHH
Confidence 122344 444455443 7888999999999988654311 1 335667777777766666666665
Q ss_pred HHHHH
Q 021242 290 LLKIL 294 (315)
Q Consensus 290 ~L~~l 294 (315)
.++.+
T Consensus 413 ~l~~i 417 (591)
T 2vgl_B 413 VIRDI 417 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.08 E-value=5.1e-10 Score=110.14 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=143.5
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHH-HHhhccCCChHHHHHHHHHHHHhccC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLI-EIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+.+.++++.|++ ++++.|..|+++|.+|+..+..+..+...++ |..++ .+|. +.+.+++..|+++|.||+.+
T Consensus 34 ~~i~Pll~~L~S----~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~-v~~ll~~lL~--D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 34 DKILPVLKDLKS----PDAKSRTTAAGAIANIVQDAKCRKLLLREQV-VHIVLTETLT--DNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HTTHHHHHHHSS----SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTH-HHHHHHTTTT--CSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-HHHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 356667788987 6778899999999999987777777777555 66654 5677 45889999999999999974
Q ss_pred --CCcHHHHHhhCCcHHHHHHHhcC--------C--C----------cchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHH
Q 021242 167 --PLNRYQVIALGGVQPLFSLVVNG--------G--R----------AGIVEDASAVIAQIAG-CEESVDEFKKCCGIGV 223 (315)
Q Consensus 167 --~~~~~~i~~~g~v~~L~~lL~~~--------~--~----------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~ 223 (315)
++.+..+++.|++++|..++.+. + . ..+.+.++.+|.+||. ..+....+.+.++++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 57888999999999999998521 0 0 0133457788999986 5666777888888999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCc---HHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 224 LVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQV---ADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 224 Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~---~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
++..+.+.+.....+...+..+|+.++..+ +...+.+.. .|. +..+..+..+.++ .+..++.+|.++.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~--~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~ 257 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITD--DQETHVYDVLLKLATGTDP-RAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHT--CCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHh--cchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHh
Confidence 999886543345689999999999998744 455566665 554 2333343444444 4566777777763
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.01 E-value=1.8e-08 Score=97.42 Aligned_cols=266 Identities=15% Similarity=0.100 Sum_probs=167.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.++.+...|+++++.+|..|+.+|.++. +++... ..+|.+..++.+.++.+|..|+.++.++....+ ..+..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~ 158 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVED 158 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhccc
Confidence 3556666777888888888888887775 233222 236789999999999999999999999876443 23334
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+.++.|..+|.+ .++.++..|+.+|..++........+.-..+.++.|+..+.. .++-.+...+++|..++..
T Consensus 159 ~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 159 QGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp HHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCC
Confidence 5678999999986 688999999999999986543221111112447788888873 4777888888999888753
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc----ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG----CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
++.. ....++.+..++. +.+..++..|+.++..+.. +++..+.+. ....+.|+.++. . ++.+|..+
T Consensus 233 ~~~~----~~~~l~~l~~~l~-~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~---d~~vr~~a 302 (591)
T 2vgl_B 233 DDRE----AQSICERVTPRLS-HANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G---EPEVQYVA 302 (591)
T ss_dssp SHHH----HHHHHHHHTTCSC-SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S---CHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C---CccHHHHH
Confidence 3211 1234566666664 5677888889999888763 334333332 223455554443 2 45555555
Q ss_pred HHHHHHHhccCC-----------------HHHHHHHHHH------c---cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 243 VSALLNLVNFGG-----------------ERAAEEVKEM------A---MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 243 ~~~L~~l~~~~~-----------------~~~~~~i~~~------~---~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+|..+..... ...+.+.++. . ..+++.|...+++.++.+|+.+.+.+..+..
T Consensus 303 L~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp HHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 555555543110 0011111100 0 1134556666777788888888887766653
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.92 E-value=3.1e-08 Score=99.26 Aligned_cols=275 Identities=12% Similarity=0.106 Sum_probs=179.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-- 83 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-- 83 (315)
-++.+.+.+.+.++..|..|+.++..++.... ..-.... ..++|.|+..+.+.++.++..++++|..++..-...+
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34556667788899999999999999985532 2111111 2478888999988999999999999988875422110
Q ss_pred -hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CC-chhhh-hhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 84 -MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DS-YRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 84 -i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~-~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
-.-...++.++..+.+ . +.++..++++|.+++.. .+ ....+ .....+++.|+.++.+.+.++.++..++.+
T Consensus 449 ~~~~~~~l~~l~~~l~~----~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQD----H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTHHHHHHHHHHHHTS----C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 0123457788888875 3 78899999999998852 11 01111 112355788888887432236788889999
Q ss_pred HHHhccC-CCcHHHHHhhCCcHHHHHHHhcC--------------CCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHH
Q 021242 160 LFGIALY-PLNRYQVIALGGVQPLFSLVVNG--------------GRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGV 223 (315)
Q Consensus 160 L~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~--------------~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~ 223 (315)
|..+... ++.....+ ...+|.+++.+.+. ....++..++.+|.+++. .+....... ...++.
T Consensus 524 l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ 601 (861)
T 2bpt_A 524 LTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGL 601 (861)
T ss_dssp HHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHH
T ss_pred HHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHH
Confidence 9998873 33222222 24667777777421 122345668888888765 222111111 123677
Q ss_pred HHHHhhcCCCCCh-hHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 224 LVDLLDLGTGSGH-RVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 224 Lv~ll~~~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
++..++.. +. .+++.++.++..++...++.....+ ...++.|...+.+.++.++..|..++..+..
T Consensus 602 l~~~l~~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~l----~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 602 FFRLLEKK---DSAFIEDDVFYAISALAASLGKGFEKYL----ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHST---TGGGTHHHHHHHHHHHHHHHGGGGHHHH----HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---CCCcHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 77888764 45 7899999999888764333332333 3478888888887888899999988776654
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.85 E-value=9.8e-08 Score=92.79 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=176.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
...++.+.+.|+++++.+|..|+.+|.++.. ++ +. ...++.+..+|++.++.+|..|+.++.++....+. .+
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v 177 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LM 177 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HH
Confidence 3467788999999999999999999999973 22 22 35688999999999999999999999998865432 22
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc-hhhhhhccccHHHHHHHhhcc-------------CCCh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY-RPIIGAKRDIIHSLIEIIKTR-------------NSPL 150 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~-------------~~~~ 150 (315)
.+.++.+..+|.+ .++.++..|+.+|..+...+.. ...+ ..++|.++.+|... ..++
T Consensus 178 --~~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 178 --EMFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp --GGGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred --HHHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 2567777888876 6889999999999998864321 1122 24588888877631 1266
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhc-----CCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHH
Q 021242 151 RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVN-----GGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLV 225 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv 225 (315)
-.+...+++|..++..+.. ......+.|.+++.. +.+..+...|..++..+...+..+. .++..|.
T Consensus 249 ~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~ 319 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence 7778889999998874321 112344555555531 1123456667777777654332221 2456777
Q ss_pred HHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCC
Q 021242 226 DLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 226 ~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
.++.+. ++.+|..++.+|..++... ...+ ......+..++.++++.+|..|..+|-.+....|
T Consensus 320 ~~L~~~---d~~vr~~aL~~L~~i~~~~-----p~~~---~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 320 RFLLNN---DKNIRYVALTSLLKTVQTD-----HNAV---QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp HHHTCS---STTTHHHHHHHHHHHHHHH-----HHHH---GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred HHHhCC---CCchHHHHHHHHHHHHhhC-----HHHH---HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence 777764 6788888888888886531 2233 3356677777777788888888888877766554
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.84 E-value=3.5e-07 Score=88.90 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=179.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.-++.+.+.|+++++.+|.+|+.++..+...+++.. .+.++.+.++|.+.++.++..|+.+|..++..+....-.
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 346788889999999999999999999998776532 267888899999999999999999999998765321111
Q ss_pred hcCchHHHHHHHhcC----CC-------CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc----CCCh
Q 021242 86 TRGLLDAISHVLRHH----ST-------STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR----NSPL 150 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~----~~-------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~ 150 (315)
-...++.++.+|++. .+ ..++-.+.....+|..+...++. .. ..+++.|..++... +.+.
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~~--~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---SS--EAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---HH--HHHHHHHHHHHhccccccchHH
Confidence 125688888877631 00 13567777888888888754321 11 23456666665410 1245
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc
Q 021242 151 RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~ 230 (315)
.+...|++++..+...+. +. ..++..|..++. +++..++..|+..|..++... ..++. .....++..+.+
T Consensus 292 aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~-~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 292 AILYETVLTIMDIKSESG----LR-VLAINILGRFLL-NNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHT-CSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHh-CCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccC
Confidence 788899999999765321 22 246778888885 567889999999999887532 22222 345677888886
Q ss_pred CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 231 GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 231 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
. +..++..++.+|..++...+ . .. +++.|...+.+.++.+|..+...+..+..
T Consensus 362 ~---d~~Ir~~alelL~~l~~~~n--v-~~-------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 362 L---DVSIKRRAMELSFALVNGNN--I-RG-------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp S---CHHHHHHHHHHHHHHCCSSS--T-HH-------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred C---ChhHHHHHHHHHHHHccccc--H-HH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5 78999999999999986432 1 22 33456666777788888888877666654
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.82 E-value=5.3e-07 Score=90.44 Aligned_cols=273 Identities=10% Similarity=0.087 Sum_probs=180.2
Q ss_pred hhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc
Q 021242 6 RTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSS--SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 6 ~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~ 79 (315)
.-++.+++.+.++ ++..|..++.++..++..-.. ..+.. ...++.+...+.+. +..++..|+.+|.++...-
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578889999888 899999999999999865211 11222 34567777788776 6889999999998876432
Q ss_pred ch---hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhccCCChHHHH
Q 021242 80 RD---SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 80 ~~---~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
.. ........++.+...+.+ .+.+++..++.+|..+..... ....+. ..+++.++..+. +.++.++.
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~--~~~~~v~~ 277 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMK--SDIDEVAL 277 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHT--CSSHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhc--CCchHHHH
Confidence 11 111112246666666664 578889999999999885322 122222 156788888777 45788899
Q ss_pred HHHHHHHHhccCCC---------------------cHHHHHhhCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhc
Q 021242 155 DALKALFGIALYPL---------------------NRYQVIALGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~---------------------~~~~i~~~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~ 207 (315)
.|+..+.+++.... ...+-.-...++.+++.+... .+..++..+..+|..++.
T Consensus 278 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~ 357 (876)
T 1qgr_A 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHH
Confidence 99988888875310 000000134466777777421 234567778888888765
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.-. +.+.. ..++.+...+.+. +..+|+.++.+|..++....+......+ ...++.|+..+.+.++.+|..|
T Consensus 358 ~~~--~~~~~-~~l~~l~~~l~~~---~~~~r~~a~~~l~~i~~~~~~~~~~~~~---~~~l~~l~~~l~d~~~~vr~~a 428 (876)
T 1qgr_A 358 CCE--DDIVP-HVLPFIKEHIKNP---DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVVRDTA 428 (876)
T ss_dssp HHG--GGGHH-HHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHHHTCSSHHHHHHH
T ss_pred HCc--HhhHH-HHHHHHHHHccCC---ChHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHH
Confidence 311 11111 2345555666654 7899999999999998644322222222 4588999999999999999999
Q ss_pred HHHHHHHhhC
Q 021242 288 VALLKILVDD 297 (315)
Q Consensus 288 ~~~L~~l~~~ 297 (315)
.++|..+...
T Consensus 429 ~~~l~~~~~~ 438 (876)
T 1qgr_A 429 AWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 60
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.78 E-value=1.9e-08 Score=105.22 Aligned_cols=279 Identities=11% Similarity=0.068 Sum_probs=184.9
Q ss_pred ChhhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 1 ~~~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
|-.....++.+++.+.+++++.|..|...|.+....+...-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 44456789999999999999999999999998765431110001123567889999998999999999999988875432
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCc----hhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSY----RPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
... ....++.|+..+.+ +++.++..++.+|..++.. ... ...-.....++|.|+..+.+ ..++.++..
T Consensus 81 ~~~--~~~i~~~Ll~~l~d----~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~ 153 (1230)
T 1u6g_C 81 EYQ--VETIVDTLCTNMLS----DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLE 153 (1230)
T ss_dssp HHH--HHHHHHHHHHHTTC----SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHH
T ss_pred HHH--HHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHH
Confidence 221 12356777777775 5667888888899888742 221 00111123568999998873 257889999
Q ss_pred HHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCC
Q 021242 156 ALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGS 234 (315)
Q Consensus 156 a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~ 234 (315)
|+.+|..++.. ++.-.. .-...++.++..+. +++..++..|+.+|..++..... .+. ...++.++..+... .
T Consensus 154 al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~--~ 226 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVN-FHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKN--D 226 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccC--C
Confidence 99999998852 111000 11234556666664 56678899999999999764221 121 23478888888764 1
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+...+..++.++..++...+.. +..+-...++.+...++++++.+|+.|...+..+...
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHR----IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGG----GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3456666778888877644322 1111156788999999888999999999988877653
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.78 E-value=1e-07 Score=88.40 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=179.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccchhhh--
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSRDSLM-- 84 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~~~~i-- 84 (315)
..+++.|.+.++.+ ..+..+|..++..+.... .-.+.+|.|+..+.+. ++.+++.|+.+|..++..-....+
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 45777887777677 788888888886532110 1157899999999888 899999999999988764321111
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-ch--hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YR--PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~--~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++.+...+.+.. ++++++..++.++.++...-+ +- ..+. .-+++.+...+. ..++.++..++++|.
T Consensus 169 ~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~--~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 169 KSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQ--CPDTRVRVAALQNLV 242 (462)
T ss_dssp GHHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHTT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 12346788888888620 168899999999998764211 10 1111 123566666666 457889999999999
Q ss_pred HhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh---------------------cC
Q 021242 162 GIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK---------------------CC 219 (315)
Q Consensus 162 ~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---------------------~~ 219 (315)
.++...... ...+..+.++.++..+. +.+..++..++..+..++........+.+ ..
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 243 KIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 988632211 11111256777777775 56778888899988888764321111111 12
Q ss_pred CHHHHHHHhhcCC----CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 220 GIGVLVDLLDLGT----GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 220 ~i~~Lv~ll~~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+|.++..+...+ +.+...+..+..+|..++...++ .++ ..+++.+...+++.+.++|..|..+|..+.
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~---~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV---PHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 3566666665321 12457888999999999875432 232 346777888888899999999999999998
Q ss_pred hC
Q 021242 296 DD 297 (315)
Q Consensus 296 ~~ 297 (315)
+.
T Consensus 395 ~~ 396 (462)
T 1ibr_B 395 EG 396 (462)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.77 E-value=1.6e-07 Score=94.36 Aligned_cols=277 Identities=13% Similarity=0.077 Sum_probs=173.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-- 83 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-- 83 (315)
-++.+.+.+.++++..|..|+.++..++.... +..... -...+|.++..+++.++.++..|+++|.+++..-....
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 35566677788899999999999999986533 211111 14579999999999999999999999999886533211
Q ss_pred -hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC------------chhhh-hhccccHHHHHHHhhccC-C
Q 021242 84 -MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS------------YRPII-GAKRDIIHSLIEIIKTRN-S 148 (315)
Q Consensus 84 -i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~------------~~~~i-~~~~g~i~~Lv~ll~~~~-~ 148 (315)
-.-...++.|+..+.+ ++.++..++++|.+++.... ....+ .....+++.|+..+.... +
T Consensus 446 ~~~l~~~l~~l~~~l~~-----~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSA-----EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp TTTHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 1123457777777775 37888999999999985311 01111 112356788888887421 1
Q ss_pred ChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhc----------CCC----cchHHHHHHHHHHHhcC-h-hh
Q 021242 149 PLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVN----------GGR----AGIVEDASAVIAQIAGC-E-ES 211 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~----------~~~----~~~~~~a~~~L~~L~~~-~-~~ 211 (315)
+..++..++.+|..+... +...... -...++.+++.+.. +.+ ..++..++.++..++.. + ..
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPA-VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHH-HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHH-HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 345667788888877763 2222222 23556666666542 111 23456678888888653 2 21
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVAL 290 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~ 290 (315)
..... ...++.++.++++.. ....+++.++.++..++...++.....+ ..+++.|...+++. ++.++..|.++
T Consensus 600 ~~~~~-~~l~~~l~~~l~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 600 ALQIS-DVVMASLLRMFQSTA-GSGGVQEDALMAVSTLVEVLGGEFLKYM----EAFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp HHTTH-HHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGH----HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHhcc-CCCCccHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 11111 124677788887530 0147889999999998864322222222 23678888888886 89999999988
Q ss_pred HHHHhh
Q 021242 291 LKILVD 296 (315)
Q Consensus 291 L~~l~~ 296 (315)
+..+..
T Consensus 674 l~~l~~ 679 (876)
T 1qgr_A 674 VGDLCR 679 (876)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877754
No 63
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.63 E-value=4.6e-06 Score=83.47 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=175.8
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHH--hCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMIS--EAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~ 80 (315)
.-++.|++.+.++ ++..+..|+..+..+++.-....+.+. -...++.++..+.+. ++.++..|+.+|.++...-+
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578888899888 899999999999998864221100001 123466677777776 78999999999987642211
Q ss_pred ---hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 81 ---DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 81 ---~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.........++.|...+.+ ++.+++..++.+|..++.... ....+.. .+++.+...+. +.++.++..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~----~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~--~l~~~~~~~~~--~~~~~vr~~ 285 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQA----EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMK--SPNDKVASM 285 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTC----SCHHHHHHHHHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTT--CSSHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc--CCcHHHHHH
Confidence 1111112246666666665 678999999999998885322 1222211 45666667776 457889999
Q ss_pred HHHHHHHhccCCC------------------cHHHHHhhCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhcChhh
Q 021242 156 ALKALFGIALYPL------------------NRYQVIALGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 156 a~~aL~~Ls~~~~------------------~~~~i~~~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
|+..+..++.... .....+ ...+|.++..+... .+..++..+..+|..++..-.
T Consensus 286 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~- 363 (861)
T 2bpt_A 286 TVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG- 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-
Confidence 9999988876321 111111 45677788887531 123466778888888865311
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
..+. ...++.+...+.+. +...++.++.++..++....+......+ ..+++.|...+.+.++.+|..|.++|
T Consensus 364 -~~~~-~~l~~~l~~~l~~~---~~~~r~~a~~~l~~i~~~~~~~~~~~~l---~~il~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T 2bpt_A 364 -NHIL-EPVLEFVEQNITAD---NWRNREAAVMAFGSIMDGPDKVQRTYYV---HQALPSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp -GGGH-HHHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -HhHH-HHHHHHHHHHcCCC---ChhHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 1111 01245555556553 7889999999999998643322222222 34788888888889999999999988
Q ss_pred HHHhhC
Q 021242 292 KILVDD 297 (315)
Q Consensus 292 ~~l~~~ 297 (315)
..+...
T Consensus 436 ~~l~~~ 441 (861)
T 2bpt_A 436 GRIADS 441 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.50 E-value=2.8e-06 Score=70.68 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=140.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~ 81 (315)
+..+..|.++|...++.++..++.+|..+.+.-+.......-...+|.++.++++.|..+--.|+++|.-+-.+.+ +
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3478899999999999999999999999998754444444445569999999999999999999999977766543 2
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
... -....|.+++++ +++-....++..+..+...... ..++..+++++. +.++.++..|+++|.
T Consensus 112 ~y~---Kl~~aL~dlik~----~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~--Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 112 TFL---KAAKTLVSLLES----PDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVV--SPDLYTKVAGFCLFL 175 (265)
T ss_dssp HHH---HHHHHHHHHTTS----CCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHhcC----CCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHh--CCChhHHHHHHHHHH
Confidence 222 146778888886 7888899999999998322222 245677888886 569999999999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
+++...+...-+ .+++..+-.+|. +.++.+++.|+.+|-.+.+.+
T Consensus 176 eia~~S~D~~i~--~~I~~eI~elL~-~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 176 NMLNSSADSGHL--TLILDEIPSLLQ-NDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHGGGCSSCCCG--GGTTTTHHHHHT-CSCHHHHHHHHHHHHHHTTSC
T ss_pred HhhcccCCHHHH--HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCc
Confidence 999843222211 345566777886 468889999999999987753
No 65
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.47 E-value=3.2e-08 Score=76.29 Aligned_cols=122 Identities=12% Similarity=0.101 Sum_probs=91.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
....++.++..|+++++.+|..|++.|..+... .++.|+.+|++.++.+|..|+++|.++.
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~------- 70 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQ------- 70 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGC-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcC-------
Confidence 345678899999999999999999888766321 2799999999999999999999998875
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....++.|+..|++ +++.++..++++|.++. . ...++.|+.+++ +.++.++..|..+|.+|
T Consensus 71 --~~~a~~~L~~~L~d----~~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~--d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 71 --DERAVEPLIKLLED----DSGFVRSGAARSLEQIG----------G-ERVRAAMEKLAE--TGTGFARKVAVNYLETH 131 (131)
T ss_dssp --SHHHHHHHHHHHHH----CCTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTT--SCCTHHHHHHHHHGGGC
T ss_pred --CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHh--CCCHHHHHHHHHHHHhC
Confidence 23468999999987 67899999999999864 2 234899999998 56889999999988653
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=8.2e-07 Score=75.64 Aligned_cols=181 Identities=10% Similarity=0.103 Sum_probs=133.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh-hhh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL-MST 86 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~-i~~ 86 (315)
.+.+.+.+.++..|..|+..|..+....+... ..+ ..+++.|...+. +.+..++..|+.+|..++..-.... -.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 57888999999999999999999986632211 011 234777888884 8899999999999999986533221 112
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
...++.|+..+.+ .+..++..+..+|..+..... + ..+++.+...++ +.++.++..++..|..+...
T Consensus 97 ~~ilp~ll~~l~d----~~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~--~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 97 SACVPSLLEKFKE----KKPNVVTALREAIDAIYASTS----L---EAQQESIVESLS--NKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHH
Confidence 3468888898886 678999999999999876432 1 245888888888 56899999999999995443
Q ss_pred --CCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 167 --PLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 167 --~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
++. -...+ ...+|.++.++. +++..++..|..++..++.
T Consensus 164 ~~~~~~~~~~l-~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 164 TQPTALNKKLL-KLLTTSLVKTLN-EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCGGGCCHHHH-HHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 221 11222 367889999995 6788899999998888764
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.45 E-value=1.3e-06 Score=91.37 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=156.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh---
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS--- 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~--- 82 (315)
..++.+++.|.+.++++|..|+.+|..++..-+. ..+ ..+++.|+..+.+.++.+|..|..+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4577899999999999999999999999865333 111 345788888888888889999999998776542211
Q ss_pred --h--hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 83 --L--MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 83 --~--i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
. -.-+..+|.|+..+.+ .++...+..+..++..++. ..+.-. .....+++.|+..+. +.++.++..|+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~---~~~~~~~~~al~~l~~~~~~~~~~l~--~~~~~ll~~l~~~L~--~~~~~vR~~a~ 196 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAK---QEDVSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLT--SPRLAVRKRTI 196 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSC---CSCHHHHHHHHHHHHHHHHHTCSSCT--TTHHHHHHHHGGGGG--CSSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHc--CCcHHHHHHHH
Confidence 1 1134578888888873 1577889999999999884 222111 111345778888887 45788999999
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHh--cCCHHHHHHHhhcCCCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKK--CCGIGVLVDLLDLGTGS 234 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~--~~~i~~Lv~ll~~~~~~ 234 (315)
.+|..++...... + -...++.+++.|.+..+...+..++.++..++.. +. .+.. ...++.++..+.+.
T Consensus 197 ~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~--- 267 (1230)
T 1u6g_C 197 IALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD--- 267 (1230)
T ss_dssp HHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC---
T ss_pred HHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCC---
Confidence 9999998743322 2 2356788888886443345566677777777542 21 2211 12478888888754
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 021242 235 GHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~ 253 (315)
++.+++.+..++..++...
T Consensus 268 ~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 268 DDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp CTTTHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHC
Confidence 7788999888888887644
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.41 E-value=2.1e-05 Score=76.43 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=165.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH--cCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL--YSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
..++.+...|+++++.+|.-|+.+|+++.. ++ +. ...+|.+.++| .+.++-++..|+.++.++....+ ..
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~ 182 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DL 182 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GG
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hh
Confidence 356678888899999999999999999963 33 22 24678899999 88899999999999988876443 33
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh----ccCC-----------
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK----TRNS----------- 148 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~----~~~~----------- 148 (315)
+...+.++.+.++|.+ .++.++..|..++..++..+.. .+ ..++|.+++.|. ...-
T Consensus 183 ~~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 183 VPMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp CCCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred cCchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 3235789999999986 6888888999999998753321 12 133555554443 1101
Q ss_pred ChHHHHHHHHHHHHhccCC--CcHHHHHhhCCcHHHHHHHhcCC--------Cc--chHHHHHHHHHHHhcChhhHHHHH
Q 021242 149 PLRSVKDALKALFGIALYP--LNRYQVIALGGVQPLFSLVVNGG--------RA--GIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~v~~L~~lL~~~~--------~~--~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
++-.+...++.|..++..+ +.+..+.+ .++.++..+...+ +. .+.-.|..++..+...++-+.
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH---
Confidence 4567777888888887632 23333322 3333333321111 11 455556666666654332222
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHh
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILV 295 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~ 295 (315)
.++..|..++.+. ++.+|..++..|..++....+ ...++ .....+...+. ++++.+|..|..+|-.+.
T Consensus 329 --~~~~~L~~~L~~~---~~niry~aL~~l~~l~~~~~~---~~~~~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 329 --RACNQLGQFLQHR---ETNLRYLALESMCTLASSEFS---HEAVK---THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp --HHHHHHHHHSSCS---CHHHHHHHHHHHHHHTTCTTT---HHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhcCC---CcchHHHHHHHHHHHHhccCc---HHHHH---HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 2345666777643 678888888888888764321 12332 35566666677 677788888887776665
Q ss_pred hC
Q 021242 296 DD 297 (315)
Q Consensus 296 ~~ 297 (315)
..
T Consensus 398 ~~ 399 (621)
T 2vgl_A 398 DR 399 (621)
T ss_dssp CH
T ss_pred Ch
Confidence 44
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.39 E-value=7.5e-05 Score=72.48 Aligned_cols=259 Identities=12% Similarity=0.125 Sum_probs=167.0
Q ss_pred hhHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 6 RTVRSLVTKL--GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.-++.+.+.| .+.+|.+|.+|+.++..+...+++. +...+.++.+.++|.+.++.++..|+.+|..++.++....
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 3456777888 8889999999999999999876642 2225899999999999999999999999999876654321
Q ss_pred hhhcCchHHHH----HHHhcCCCC---------CCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhc---
Q 021242 84 MSTRGLLDAIS----HVLRHHSTS---------TSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKT--- 145 (315)
Q Consensus 84 i~~~~~i~~L~----~lL~~~~~~---------~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~--- 145 (315)
...++.++ +++..+... .++-.+......|..+...++ .+..+. .+++.++..+..
T Consensus 223 ---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 223 ---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKAQEPPK 296 (621)
T ss_dssp ---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHHHSCCS
T ss_pred ---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhhccCcc
Confidence 12344444 444321110 145566666666666654222 111111 123444433221
Q ss_pred ------cCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC
Q 021242 146 ------RNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC 219 (315)
Q Consensus 146 ------~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 219 (315)
.+....+...|.+++..+..+++.. ..++..|..++. +++..++..++..|..++........+. .
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~~~~~~--~ 368 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQ-HRETNLRYLALESMCTLASSEFSHEAVK--T 368 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTTHHHHH--T
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCcHHHHH--H
Confidence 0012377788999999986433222 245667888885 5678889999999999977542223332 3
Q ss_pred CHHHHHHHhh-cCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 220 GIGVLVDLLD-LGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 220 ~i~~Lv~ll~-~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
....++..+. +. +..++..++.+|..++.. .....+ +..|...+...++..+..+...+..+
T Consensus 369 ~~~~i~~~L~~d~---d~~Ir~~aL~lL~~l~~~---~Nv~~I-------v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTER---DVSVRQRAVDLLYAMCDR---SNAQQI-------VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCC---CHHHHHHHHHHHHHHCCH---HHHHHH-------HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC---CHhHHHHHHHHHHHHcCh---hhHHHH-------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677788887 54 788999999999999742 333333 44666777777777777766644444
No 70
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.27 E-value=7.3e-06 Score=70.27 Aligned_cols=189 Identities=10% Similarity=0.097 Sum_probs=131.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-HhccCchhhHHHHh-CCCHHHHHHHH-cCCCHHHHHHHHHHHHhcCcccc-hhhh--
Q 021242 11 LVTKLGSVSEQTRAEALAELRL-LSKHDAEIRPMISE-AGSIPYLAEIL-YSSSHAFQENAAATLLNLSITSR-DSLM-- 84 (315)
Q Consensus 11 Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~-~~~i-- 84 (315)
+-+.+.++++..|..|+..|.. +....+.....-.+ ...+..|...+ ++.+..++..|+.+|..++.+-+ ..+-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4567789999999999999999 87543321100011 13466777788 67889999999999999985433 2211
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.-...++.++..+++ ....++..+..++..+.. .++.... ..-..+++.|+..++ +.++.++..++.+|..+
T Consensus 101 y~~~llp~ll~~l~d----kk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~--~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKE----KKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMK--HKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHc--CCChHHHHHHHHHHHHH
Confidence 122368888888886 567888888888888875 3222211 112256889999998 55899999999999988
Q ss_pred ccCCCc--HH--HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 164 ALYPLN--RY--QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 164 s~~~~~--~~--~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
...... .. ..+....+|.+.+++. +++.++++.|..++..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 863321 11 1122578999999995 6788899999888888743
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=4.9e-05 Score=64.49 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=129.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCc
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLN 169 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~ 169 (315)
+.+.+.+.+ .+-..|..++..|..+... +.... .....+++.|...+.. +.+..++..|+.+|..|+..-..
T Consensus 18 ~~l~~~l~s----~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 18 KDFYDKLEE----KKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITK-DSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp TTHHHHHTC----SSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHhhhcc----CCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 346777776 6788888999999988754 33111 1123557888888831 35788999999999999963211
Q ss_pred HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 021242 170 RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNL 249 (315)
Q Consensus 170 ~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l 249 (315)
...-.-...+|.++..+. +++..+++.+..+|..+..... -. ..++.+...+++. ++.+|+.++..|..+
T Consensus 91 ~~~~~~~~ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~-~~-----~ll~~l~~~l~~~---~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFK-EKKPNVVTALREAIDAIYASTS-LE-----AQQESIVESLSNK---NPSVKSETALFIARA 160 (242)
T ss_dssp GGHHHHHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSC-HH-----HHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCC-HH-----HHHHHHHHHHcCC---ChHHHHHHHHHHHHH
Confidence 111112356888888885 5677889999999999876432 11 1357788888875 889999999999996
Q ss_pred hccCCHH--HHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 250 VNFGGER--AAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 250 ~~~~~~~--~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.....+. ....+ ...+|.|..++.+.++++|..|...+..+.
T Consensus 161 l~~~~~~~~~~~~l----~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 161 LTRTQPTALNKKLL----KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HTTCCGGGCCHHHH----HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 5433222 12233 237899999999999999999999877764
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.17 E-value=0.00012 Score=67.58 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=145.3
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHhcCcccc-hhhhhhc--CchHHHHHHHhcC-------------CCCCCHHHHHHHHHH
Q 021242 53 LAEILYS-SSHAFQENAAATLLNLSITSR-DSLMSTR--GLLDAISHVLRHH-------------STSTSSAAVQSSAAT 115 (315)
Q Consensus 53 Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~~i~~~--~~i~~L~~lL~~~-------------~~~~~~~~~~~a~~~ 115 (315)
++..|.. ++...+..++.+|..+...++ +..+.+. ..++.++.+++.. ++....+.+-.++-+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 3444444 345556778889988887776 5444333 2477776655421 111135667789999
Q ss_pred HHHhhcCCCchhhhhhcccc--HHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcH----HHH-HhhCCcHHHHHHHh
Q 021242 116 LHSLLVVDSYRPIIGAKRDI--IHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNR----YQV-IALGGVQPLFSLVV 187 (315)
Q Consensus 116 L~~Ls~~~~~~~~i~~~~g~--i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~----~~i-~~~g~v~~L~~lL~ 187 (315)
+|-|+..++....+... ++ ++.|+.+++. ....++.+.++.+|.|+.... +.. ..+ +..++ +.+++.|.
T Consensus 252 iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~-s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQK-YLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhc-chHHHHHHHHHHHh-hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 99999988876666653 42 3677777875 356789999999999998743 222 222 23344 56777775
Q ss_pred cC--CCcchHHHHHH---H----HHHHhcCh------------------------hhHHHHHhcCC--HHHHHHHhhcCC
Q 021242 188 NG--GRAGIVEDASA---V----IAQIAGCE------------------------ESVDEFKKCCG--IGVLVDLLDLGT 232 (315)
Q Consensus 188 ~~--~~~~~~~~a~~---~----L~~L~~~~------------------------~~~~~i~~~~~--i~~Lv~ll~~~~ 232 (315)
.. .++.+.+..-. . ...+++.+ +|...|.+..+ +..|+++|....
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 34555443211 1 12222111 22223322232 688899997310
Q ss_pred -------CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 233 -------GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 233 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+.++.+..-||.=+..+++..+ +.+ .+++ ..|+-..+..++.+++++||..|-..++.+-
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P-~gr-~i~~-~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLP-ESI-DVLD-KTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCT-THH-HHHH-HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCc-chh-HHHH-HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0134555556666788887665 343 4444 3789888889999999999999998887653
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.94 E-value=0.00062 Score=68.73 Aligned_cols=260 Identities=11% Similarity=0.121 Sum_probs=165.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCch---hhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAE---IRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
+..+...+...... +.|+..+..++..... .-..++ +.+|.++..+.+....++.+|..++..+...-+...+
T Consensus 56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44455555444222 7777888888754321 112222 5788889988888888888888777666543322222
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhh-hccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIG-AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
...+|.|+..|++ .+.=+.+..|..++..|+... ...+. .-..+||.+-..+. +..+++...|..++..+
T Consensus 132 --~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~--d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 132 --KALLPHLTNAIVE---TNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMW--DTKKEVKAAATAAMTKA 202 (986)
T ss_dssp --HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcc--cCcHHHHHHHHHHHHHH
Confidence 3468999999976 245688889999999998644 23333 22345666666666 45789999999999999
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC----CHHHHHHHhhcCCCCChhHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC----GIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~----~i~~Lv~ll~~~~~~~~~~~ 239 (315)
|.--+|+.. ...+|.|++.+. +|+. .-.+++.|+....... ++.. .+|.|.+-|... +..++
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~-~p~~-----~~~~~~~l~~~tfv~~--v~~~~l~~~~p~l~r~l~~~---~~~~~ 268 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIA-DPTE-----VPETVHLLGATTFVAE--VTPATLSIMVPLLSRGLNER---ETGIK 268 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHH-CTTH-----HHHHHHHHTTCCCCSC--CCHHHHHHHHHHHHHHHTSS---SHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhc-Chhh-----hHHHHHHhhcCeeEee--ecchhHHHHHHHHHhhhccC---cchhh
Confidence 986555543 366899999996 4522 2334555654321100 0111 146666667654 78888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
.+++.++.|+|+--.+. .++..+=--.+|.|-...+. .+|++|+.|.+.+.-|.+
T Consensus 269 r~~~~~~~n~~~lv~~~--~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 269 RKSAVIIDNMCKLVEDP--QVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHTTCCCH--HHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEcchhhhcCCH--HHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99999999999854332 12211003455555565555 699999999998888854
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.91 E-value=1.2e-05 Score=61.55 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=74.6
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.++.|+..|+++++.+|..|+++|..+... .+++.|+.+|++.++.++..|+++|.++. .
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-----------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---------~ 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQIG---------G 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC---------S
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------c
Confidence 479999999999999999999999988631 24899999999999999999999998875 3
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~ 118 (315)
...++.|+.++++ +++.++..++.+|..
T Consensus 103 ~~a~~~L~~~l~d----~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAET----GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTS----CCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHHHh
Confidence 4568899999986 677889888887754
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.79 E-value=0.0034 Score=62.92 Aligned_cols=226 Identities=14% Similarity=0.059 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhc
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRH 99 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~ 99 (315)
+.+|..|+..|....-.+. +..+++.|.+++.+.+..+++.|+.+|..+-.+..+. .++..|++.+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-----~ai~~LL~~~~e 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-----EAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----HHHHHHHHHHhc
Confidence 4566666666665432211 1124777888888777666777888886653333221 235667776654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCc
Q 021242 100 HSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGV 179 (315)
Q Consensus 100 ~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v 179 (315)
..+..++..++..|..+.. +.... ++.++..|.. ..++-++..++-++.--.....+... |
T Consensus 519 ---~~~e~vrR~aalgLGll~~--------g~~e~-~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~a------I 579 (963)
T 4ady_A 519 ---TQHGNITRGLAVGLALINY--------GRQEL-ADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSA------V 579 (963)
T ss_dssp ---CSCHHHHHHHHHHHHHHTT--------TCGGG-GHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHH------H
T ss_pred ---cCcHHHHHHHHHHHHhhhC--------CChHH-HHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHH------H
Confidence 2567777777777776543 22224 7888888875 35667766677776544444444433 4
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHH
Q 021242 180 QPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAE 259 (315)
Q Consensus 180 ~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 259 (315)
..|+..+.++++..++..|...|..++..++ ..++.++.++... .++.+|..+..+|..++...+ . .
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~-~--~ 646 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKG-L--Q 646 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSC-C--H
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCC-c--H
Confidence 4566666555666778888888887654331 3477788766543 378999999999999975432 2 1
Q ss_pred HHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 260 EVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 260 ~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
. ++..|..+.++.++.|++.|...|-.+-.
T Consensus 647 ~-------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 647 S-------AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp H-------HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred H-------HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 2 34466677888899999999998887754
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00017 Score=61.69 Aligned_cols=150 Identities=9% Similarity=0.065 Sum_probs=107.8
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhccCc--hhh-HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 8 VRSLVTKL-GSVSEQTRAEALAELRLLSKHDA--EIR-PMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 8 i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~--~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..|...+ +.+++.++..|+.+|..++..-. .-. ... .-.+|.+++.+++..+.+++.+..+|..++..-+...
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 55666777 68889999999999999985321 111 121 2268999999998888999998888877765432211
Q ss_pred hh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc--hhhhhhc-cccHHHHHHHhhccCCChHHHHHHHH
Q 021242 84 MS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY--RPIIGAK-RDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 84 i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
.. -...++.|+..|++ .++.+++.++.+|..+...... ......- ..++|.|..++. +.++.++..|..
T Consensus 140 ~~~~l~~ll~~l~~~l~~----k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~ 213 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKH----KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFE 213 (249)
T ss_dssp TTCTTHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 11 12367888888887 6789999999999998854332 2222223 467999999998 568899999999
Q ss_pred HHHHhcc
Q 021242 159 ALFGIAL 165 (315)
Q Consensus 159 aL~~Ls~ 165 (315)
+|..++.
T Consensus 214 ~l~~i~~ 220 (249)
T 2qk1_A 214 SFAILIK 220 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.78 E-value=0.00051 Score=57.25 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=115.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
-+..++.++..+++.+..+-.+|+++|..+..+-|-....+.. ++..|.++++++++-.+++|+..|..+.--..
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--- 147 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--- 147 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---
Confidence 4567899999999999999999999999998776655555544 35788899999999999999999999832221
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....+..+.+++.+ .+++++..+..++.+++...+.+..+. .++.-+-.++. +.|+.++.-|+.+|-.+
T Consensus 148 --~~~V~~~l~sLl~S----kd~~vK~agl~~L~eia~~S~D~~i~~---~I~~eI~elL~--~eD~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 148 --SKLVRTYINELVVS----PDLYTKVAGFCLFLNMLNSSADSGHLT---LILDEIPSLLQ--NDNEFIVELALDVLEKA 216 (265)
T ss_dssp --CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHGGGCSSCCCGG---GTTTTHHHHHT--CSCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhC----CChhHHHHHHHHHHHhhcccCCHHHHH---HHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 22346778888876 789999999999999997555444442 33555667788 56999999999999999
Q ss_pred ccCC
Q 021242 164 ALYP 167 (315)
Q Consensus 164 s~~~ 167 (315)
.+.|
T Consensus 217 ls~p 220 (265)
T 3b2a_A 217 LSFP 220 (265)
T ss_dssp TTSC
T ss_pred HcCc
Confidence 8864
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.71 E-value=0.0025 Score=56.10 Aligned_cols=190 Identities=16% Similarity=0.143 Sum_probs=129.6
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCC
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHS-LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
+..++.-|.+ ++.+.+..+..-|.. ++...+-...|...+| +..|+.++. .++...+.+++++|.+|..+.+
T Consensus 120 a~~iiekL~~----~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G-L~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 120 VNAILEKLYS----SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEG-LSCLIRVGA--AADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHH----CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH-HHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhc----CCcHHHHHHHHHHHHHhhcchHHHHHHHHhcc-HHHHHHHHH--hcChHHHHHHHHHHHHHHhccc
Confidence 4456666765 445556667666666 4455666777777778 899999998 6688999999999999998776
Q ss_pred cHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhc-------CC---HHHHHHHhhcCCCCCh
Q 021242 169 NRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKC-------CG---IGVLVDLLDLGTGSGH 236 (315)
Q Consensus 169 ~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~-------~~---i~~Lv~ll~~~~~~~~ 236 (315)
.-.-+++ ...|.-+..++. ..+..+...|+++|-+++. .+.+...+.++ .| ...|+.+|+..+..+.
T Consensus 193 Gm~gvvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cccchhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6666664 356667777775 4567788999999999876 34454443322 12 7899999973323488
Q ss_pred hHHHHHHHHHHHHhccCCH-HHHHHHHH--HccCcHHHHHHHHhhC--CHHHHHHH
Q 021242 237 RVKENAVSALLNLVNFGGE-RAAEEVKE--MAMQVADGIADVAQNG--SAKGKTKA 287 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~-~~~~~i~~--~~~g~~~~L~~ll~~~--~~~~k~~A 287 (315)
.++.+|...+..+....++ +....++. ...|.-..+...+++. ++..++.-
T Consensus 272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 9999999888877765443 22334432 0145556666767663 66776643
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.70 E-value=0.00097 Score=58.72 Aligned_cols=152 Identities=12% Similarity=0.048 Sum_probs=118.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHH-hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHH
Q 021242 136 IHSLIEIIKTRNSPLRSVKDALKALFG-IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDE 214 (315)
Q Consensus 136 i~~Lv~ll~~~~~~~~~~~~a~~aL~~-Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 214 (315)
...++.-|. +.+......++-.|.. ++.+.+-...++..+++..|+.+.. +.+.+.+..++.+|.+|.....|...
T Consensus 120 a~~iiekL~--~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLY--SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHH--HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHh--cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHhccccccc
Confidence 345666666 3466778889999998 6668888999999999999999996 45778889999999999999999988
Q ss_pred HHhcC-CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHH------HccC--cHHHHHHHHh---hCCHH
Q 021242 215 FKKCC-GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE------MAMQ--VADGIADVAQ---NGSAK 282 (315)
Q Consensus 215 i~~~~-~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~------~~~g--~~~~L~~ll~---~~~~~ 282 (315)
++++. .|.++..++.+. ...+.+.|+.+|..++..+. .....+.+ .+.| -++.|+.+++ +++..
T Consensus 197 vvs~~~fI~~lyslv~s~---~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASL---SRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred hhCCHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 88654 699999999864 78888899999999986542 22222222 0011 2678999998 67999
Q ss_pred HHHHHHHHHHHH
Q 021242 283 GKTKAVALLKIL 294 (315)
Q Consensus 283 ~k~~A~~~L~~l 294 (315)
++.+|-.+++.+
T Consensus 273 lq~~amtLIN~l 284 (339)
T 3dad_A 273 LLVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987766
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.64 E-value=0.01 Score=47.61 Aligned_cols=215 Identities=11% Similarity=0.160 Sum_probs=140.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+.-+..++..|...-+-+|.+|+..|..+++.-++....+ +..|+-|++ +....+-...+++++.++.-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i----- 100 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE----- 100 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh-----
Confidence 3456788899999889999999999999998766644433 445666654 44455545566777766632
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
++..+..++.++.-+.--+++.++.+...+|-.++...+ ..+ ++++.-+..++.++ +..-+..|+..+..|
T Consensus 101 --~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltsk--d~~Dkl~aLnFi~al 171 (253)
T 2db0_A 101 --KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSK--NREDKLTALNFIEAM 171 (253)
T ss_dssp --CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCS--SHHHHHHHHHHHHTC
T ss_pred --CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCC--ChHHHHHHHHHHHHH
Confidence 344444455554322212789999999999999886322 222 35577788888843 544455566666554
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
. +|..+-+ .-.+|.|+.+|. +.+.-++..|..+|.+++. ++.-|+.+.+ -+.-+.+ .+..++...
T Consensus 172 G---en~~~yv-~PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D---~S~lv~~~V 237 (253)
T 2db0_A 172 G---ENSFKYV-NPFLPRIINLLH-DGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELND---TSSLVNKTV 237 (253)
T ss_dssp C---TTTHHHH-GGGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCC---SCHHHHHHH
T ss_pred h---ccCcccc-CcchHHHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcC---cHHHHHHHH
Confidence 3 3433322 467888999996 5677788899999999988 5665655532 2333443 377788777
Q ss_pred HHHHHHHhcc
Q 021242 243 VSALLNLVNF 252 (315)
Q Consensus 243 ~~~L~~l~~~ 252 (315)
...|..+..-
T Consensus 238 ~egL~rl~l~ 247 (253)
T 2db0_A 238 KEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.54 E-value=0.00053 Score=61.54 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
+..+...+++++|-+|-.|+++|+.+... +.-+ ...+.+.+.|.+.++-++..|+.+..++....+ .++ .
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~v--~ 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DVV--K 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HHH--H
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HHH--H
Confidence 44455555555555555555555555422 1111 123334444445555555555555554442221 111 1
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-CCChHHHHHHHHHHHHhccC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+.++.+-+++.+ .++-+..+|..+|..+...+ ...+..|+.-+... ..++-.+..-++.+..++..
T Consensus 176 ~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~~d---------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 176 RWVNEAQEAASS----DNIMVQYHALGLLYHVRKND---------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp TTHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHhcC----CCccHHHHHHHHHHHHHhhc---------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 344455555543 34444444555555544321 00133334333310 00222222233333333221
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L 246 (315)
++.. .....++.+..+|+ +.+..+.-.|+.++..+...+. . .. ..++..+..++.+. ++.+|-.|+..|
T Consensus 243 d~~~---~~~~~~~~l~~~L~-~~~~aVvyEa~k~I~~l~~~~~--~-~~-~~a~~~L~~fLss~---d~niryvaLr~L 311 (355)
T 3tjz_B 243 EDGS---RDSPLFDFIESCLR-NKHEMVVYEAASAIVNLPGCSA--K-EL-APAVSVLQLFCSSP---KAALRYAAVRTL 311 (355)
T ss_dssp -----------------CCCC-CSSHHHHHHHHHHHTC---------------CCCTHHHHHHSS---SSSSHHHHHHCC
T ss_pred cchh---hHHHHHHHHHHHHc-CCChHHHHHHHHHHHhccCCCH--H-HH-HHHHHHHHHHHcCC---CchHHHHHHHHH
Confidence 1000 01122233333332 3445566667777766644221 1 11 23345555666654 677888888777
Q ss_pred HHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 247 ~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
..+....+ .+++ ..-..+..++.+++..+...|..
T Consensus 312 ~~l~~~~P-----~~v~---~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 312 NKVAMKHP-----SAVT---ACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHCc-----HHHH---HHHHHHHHHccCCcHhHHHHHHH
Confidence 77765332 2222 23444556666666666555544
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.53 E-value=0.015 Score=53.63 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=136.6
Q ss_pred hhHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCc---hhhHHHHhCCCH-HHHHHHHcCCC-HHHHHHHHHHHHhcCccc
Q 021242 6 RTVRSLVTKLG-SVSEQTRAEALAELRLLSKHDA---EIRPMISEAGSI-PYLAEILYSSS-HAFQENAAATLLNLSITS 79 (315)
Q Consensus 6 ~~i~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i-~~Lv~lL~~~~-~~~~~~a~~~L~~la~~~ 79 (315)
.++..++.+|+ .+..++....+..+..+...++ ..-..+.+.... ..+.......+ .-.+..+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 45677888887 4567888899998999887765 323344444332 22333222334 345566666554444222
Q ss_pred ch--hhhhhcCchH--HHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-cccHHHHHHHhhcc--------
Q 021242 80 RD--SLMSTRGLLD--AISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-RDIIHSLIEIIKTR-------- 146 (315)
Q Consensus 80 ~~--~~i~~~~~i~--~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~ll~~~-------- 146 (315)
.+ +.. +..+. -++..|.+. ++.+.+..++.+|..|...++.|..+... ++++|.++.++...
T Consensus 157 ~~~~~~l--~~l~~~~~~~~~L~~~---~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 157 LHNVKLV--EKLLKNNNLINILQNI---EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TCCHHHH--HHHHHCHHHHHHHHCT---TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CccHhHH--HHHhhhHHHHHHhccc---cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 11 110 11122 344555541 23455667889999999999999988653 34678887765521
Q ss_pred -----CC--ChHHHHHHHHHHHHhccCCCcHHHHHhhCCc--HHHHHHHhcCCCcchHHHHHHHHHHHhcCh-----hhH
Q 021242 147 -----NS--PLRSVKDALKALFGIALYPLNRYQVIALGGV--QPLFSLVVNGGRAGIVEDASAVIAQIAGCE-----ESV 212 (315)
Q Consensus 147 -----~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v--~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~-----~~~ 212 (315)
.+ ..+.+-+++-++|-|+.+++....+...+.. +.|++.++....+.+..-++++|.||.... ...
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 01 2456778999999999998887788766644 677777875555678888999999997643 112
Q ss_pred HHHHhcCCHHHHHHHhhcC
Q 021242 213 DEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~ 231 (315)
..++-.+..+.++..|...
T Consensus 312 ~~~~~~~~~l~~l~~L~~r 330 (480)
T 1ho8_A 312 KQLLLLGNALPTVQSLSER 330 (480)
T ss_dssp HHHHHHHCHHHHHHHHHSS
T ss_pred HHHHHHccchHHHHHHhhC
Confidence 2222223346677777654
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.52 E-value=0.004 Score=55.78 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=145.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRG 88 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~ 88 (315)
...+..+.+.+.+.++-..-.+..+++..++ .+ =++..|.+=++++++-++-.|+++|.++...+- -..
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-----~~~ 139 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-----LQA 139 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----HHH
Confidence 3446677888888888888888888866322 11 236667777788999999999999999864331 112
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCC
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
..+.+.+.|.+ .++-++..|+-+..+|... +...+ + ++++.+-+++. +.++-++.+|+.+|+.++..+
T Consensus 140 l~~~lk~~L~d----~~pyVRk~A~l~~~kL~~~--~pe~v-~--~~~~~l~~ll~--d~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 140 IERYMKQAIVD----KVPSVSSSALVSSLHLLKC--SFDVV-K--RWVNEAQEAAS--SDNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHTTT--CHHHH-H--TTHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHcCC----CCHHHHHHHHHHHHHHhcc--CHHHH-H--HHHHHHHHHhc--CCCccHHHHHHHHHHHHHhhc-
Confidence 34556666666 6889999999888887643 33343 2 57899999998 558889999999999998754
Q ss_pred cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 021242 169 NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALL 247 (315)
Q Consensus 169 ~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~ 247 (315)
+. ++..++..+...+ ..-...-+.+|+.++.. +..-.. .....++.+...|++. ++.+...|+.++.
T Consensus 208 -~~------a~~kLv~~l~~~~-l~~~~~q~~llr~l~~~~~~d~~~-~~~~~~~~l~~~L~~~---~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 -RL------AVSKMISKFTRHG-LKSPFAYCMMIRVASRQLEDEDGS-RDSPLFDFIESCLRNK---HEMVVYEAASAIV 275 (355)
T ss_dssp -HH------HHHHHHHHHHSSC-CSCHHHHHHHHHHHTCC------------------CCCCCS---SHHHHHHHHHHHT
T ss_pred -hH------HHHHHHHHHhcCC-CcChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHcCC---ChHHHHHHHHHHH
Confidence 11 3344555554211 11122234455555442 111000 1122355666677764 7888888888888
Q ss_pred HHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 248 NLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.+.. .. . ... ..++..|..++.+.++.+|=-|...|+.+..
T Consensus 276 ~l~~-~~-~--~~~----~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 276 NLPG-CS-A--KEL----APAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp C-------------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred hccC-CC-H--HHH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 8743 11 1 122 2345667777888888888888776666654
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.37 E-value=0.051 Score=54.52 Aligned_cols=249 Identities=16% Similarity=0.082 Sum_probs=152.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
..++.|...|...+...+..|+.+|..+--.+ .+. .++..|+..+. ..+.++++.++..|..+. +
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~-------~ 537 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALIN-------Y 537 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-------T
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhh-------C
Confidence 44667777777666666666666666542111 111 12455555543 456678888888887665 3
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.+...++.++..|.. ..++-++..++.++. ++....+. ...|..|++.+.+ +.+..++..|.-+|..+.
T Consensus 538 g~~e~~~~li~~L~~---~~dp~vRygaa~alg-lAyaGTGn------~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 538 GRQELADDLITKMLA---SDESLLRYGGAFTIA-LAYAGTGN------NSAVKRLLHVAVS-DSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp TCGGGGHHHHHHHHH---CSCHHHHHHHHHHHH-HHTTTSCC------HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHh---CCCHHHHHHHHHHHH-HHhcCCCC------HHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhc
Confidence 455678888888874 256666665555544 34322111 1236777777664 356788999999999877
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
...+ ..++.++.+|.++.++.++..+..+|..++......+ + +..|..+..+. +..++.+|+.
T Consensus 607 ~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-a-----id~L~~L~~D~---d~~Vrq~Ai~ 669 (963)
T 4ady_A 607 LRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-A-----IDVLDPLTKDP---VDFVRQAAMI 669 (963)
T ss_dssp SSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-H-----HHHHHHHHTCS---SHHHHHHHHH
T ss_pred cCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-H-----HHHHHHHccCC---CHHHHHHHHH
Confidence 6432 3466677766555677788888888888865332222 2 34555566543 8899999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHHHHH-hhCCCC
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAVALLKIL-VDDGNM 300 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l-~~~~~~ 300 (315)
+|..+....++.....+ .+..+.|.....+ .++.++-.|.-.+=.+ .+.|++
T Consensus 670 ALG~Ig~gtnna~~~rv----a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~ 724 (963)
T 4ady_A 670 ALSMILIQQTEKLNPQV----ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNV 724 (963)
T ss_dssp HHHHHSTTCCTTTCTTH----HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTE
T ss_pred HHHHHhcCCccccchHH----HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCce
Confidence 99998764332211233 2355667777764 4777877776655444 333443
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.20 E-value=0.01 Score=55.69 Aligned_cols=244 Identities=11% Similarity=0.025 Sum_probs=153.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhC--CCHHHHHHHHc---------C-CCHHHHHHHHHHHHhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEA--GSIPYLAEILY---------S-SSHAFQENAAATLLNL 75 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~---------~-~~~~~~~~a~~~L~~l 75 (315)
.+.|+..|-++..++|-.|+..|+.+.+............ ...-.|+..|. + ...-+||.|+++|..+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 4678889999999999999999999876643211111111 22333333331 1 1235999999999888
Q ss_pred CcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 76 SITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 76 a~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.+-+.. -..+..|+..+.. ..=+++..+.-.|.++ .+.+..-.++++.++.-|. +.+++++..
T Consensus 256 -~hLp~e----~~IL~qLV~~l~~----~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~--D~DDDVRAV 318 (800)
T 3oc3_A 256 -YPLIGP----NDIIEQLVGFLDS----GDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLS--SPDEDIKLL 318 (800)
T ss_dssp -TTTSCS----CCHHHHHTTGGGC----SCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTT--CSSHHHHHH
T ss_pred -HhCChh----HHHHHHHHhhcCC----CCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcC--CcccHHHHH
Confidence 653322 2334444443343 4668888888888888 3333223467888888888 458899999
Q ss_pred HHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCc-chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCC
Q 021242 156 ALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRA-GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGS 234 (315)
Q Consensus 156 a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~ 234 (315)
|+.+|.-++ .++... ..+..+-+.|.+-.+. .-....+..|+.|+..+.. ......-+|.|...+.+.
T Consensus 319 AAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt--- 387 (800)
T 3oc3_A 319 SAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP--- 387 (800)
T ss_dssp HHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS---
T ss_pred HHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC---
Confidence 999999988 332222 2234455555432232 2355677888888775531 001113489999999975
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
-..+|..++.+|..+. ....-+.+- ..++-..++.+++.+..+.+
T Consensus 388 ITSVR~AVL~TL~tfL---~~~~LRLIF----------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS---EESIDFLVA----------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SHHHHHHHHHHTTTCC---CHHHHHHHH----------HHHHHCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH---hhhHHHHHH----------HHHHhCCcHHHHHHHHHHHH
Confidence 7899999998888775 122212222 25566678888888877765
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.03 E-value=0.051 Score=54.95 Aligned_cols=270 Identities=14% Similarity=0.132 Sum_probs=165.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccchhh-hh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSRDSL-MS 85 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~~~~-i~ 85 (315)
+|.++..+......+|..|..++..+.+.-+.. .+ ..++|.|+..|.+. .=..+..|+.++..++...+..+ ..
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 466667777777889988888888887553322 22 55689999999654 34678889999988886553222 22
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
-++.+|.+...+-+ ..++++..|..++..++..-+|++.- .+||.|++.+.+| +-+..+...|..-..
T Consensus 173 ~~~~~p~~~~~~~d----~k~~v~~~~~~~~~~~~~~~~n~d~~----~~~~~~~~~~~~p----~~~~~~~~~l~~~tf 240 (986)
T 2iw3_A 173 MPELIPVLSETMWD----TKKEVKAAATAAMTKATETVDNKDIE----RFIPSLIQCIADP----TEVPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHGGGCCCTTTG----GGHHHHHHHHHCT----THHHHHHHHHTTCCC
T ss_pred ccchhcchHhhccc----CcHHHHHHHHHHHHHHHhcCCCcchh----hhHHHHHHHhcCh----hhhHHHHHHhhcCee
Confidence 45578888888876 67899999999999999877777753 5699999999943 223445544443333
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC---hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC---EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
-.+.-...+ +=.+|.|.+-|. .+...+..+++-++.|+|.- +.....|. -.-+|.+-+.... -.++++++.+
T Consensus 241 v~~v~~~~l-~~~~p~l~r~l~-~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~--~~~pe~r~~~ 315 (986)
T 2iw3_A 241 VAEVTPATL-SIMVPLLSRGLN-ERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFAT--IADPEAREVT 315 (986)
T ss_dssp CSCCCHHHH-HHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTT--CCSHHHHHHH
T ss_pred EeeecchhH-HHHHHHHHhhhc-cCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhc--cCCHHHHHHH
Confidence 233222211 123566666664 44566778899999999984 33333333 1234444444443 2578999888
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHccC----cHHHHHHHHhhC-----CHHHHHHHHHHHHHHhhCCCC
Q 021242 243 VSALLNLVNFGG---ERAAEEVKEMAMQ----VADGIADVAQNG-----SAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 243 ~~~L~~l~~~~~---~~~~~~i~~~~~g----~~~~L~~ll~~~-----~~~~k~~A~~~L~~l~~~~~~ 300 (315)
-.++..|-+-+. +....+... .+ +...+...+... ...+...++.+...+.+.++.
T Consensus 316 ~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 383 (986)
T 2iw3_A 316 LRALKTLRRVGNVGEDDAIPELSH--AGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERII 383 (986)
T ss_dssp HHHHHHHHHHHTCBTTTBCCCCCC--TTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccccccccccccc--cchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhcccc
Confidence 777777743211 000000000 11 122233333321 245667888888888776654
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.97 E-value=0.1 Score=41.95 Aligned_cols=213 Identities=18% Similarity=0.175 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
..++..++.+|.+.-=.+|.+|+.++..++..-+. + ....+..|+-+++. +......+..+.++..++...+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l--~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-L--YEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-G--HHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-H--HHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhCH--
Confidence 45678888888766567999999999888644321 1 11246677777764 2677777788889988885322
Q ss_pred hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
-+.. +++|.|+.-.+ -++++++.+..-+|..++. +|+.- .+++.-+..++. +++. ..=+.+|..+
T Consensus 103 -e~v~--~vVp~lfanyr--igd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smlt-skd~---~Dkl~aLnFi 168 (253)
T 2db0_A 103 -ELVK--SMIPVLFANYR--IGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLS-SKNR---EDKLTALNFI 168 (253)
T ss_dssp -HHHH--HHHHHHHHHSC--CCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTS-CSSH---HHHHHHHHHH
T ss_pred -HHHH--hhHHHHHHHHh--cCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhc-CCCh---HHHHHHHHHH
Confidence 1222 45788888777 6799999999999999887 44322 244556777774 4552 3345566666
Q ss_pred hcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHH
Q 021242 206 AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKT 285 (315)
Q Consensus 206 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~ 285 (315)
+.-.++.-.-+ ...+|.|..+|.++ +.-++..++.+|.+++.-+ +..+..+. .-+.=+.+.+..+++
T Consensus 169 ~alGen~~~yv-~PfLprL~aLL~D~---deiVRaSaVEtL~~lA~~n-pklRkii~--------~kl~e~~D~S~lv~~ 235 (253)
T 2db0_A 169 EAMGENSFKYV-NPFLPRIINLLHDG---DEIVRASAVEALVHLATLN-DKLRKVVI--------KRLEELNDTSSLVNK 235 (253)
T ss_dssp HTCCTTTHHHH-GGGHHHHHGGGGCS---SHHHHHHHHHHHHHHHTSC-HHHHHHHH--------HHHHHCCCSCHHHHH
T ss_pred HHHhccCcccc-CcchHHHHHHHcCc---chhhhHHHHHHHHHHHHcC-HHHHHHHH--------HHHHHhcCcHHHHHH
Confidence 65444433333 46789999999986 8899999999999999754 34333222 223334456777777
Q ss_pred HHHHHHHHH
Q 021242 286 KAVALLKIL 294 (315)
Q Consensus 286 ~A~~~L~~l 294 (315)
....-|..+
T Consensus 236 ~V~egL~rl 244 (253)
T 2db0_A 236 TVKEGISRL 244 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.097 Score=44.86 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=117.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhccCchh--hHHHH-h-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-----h
Q 021242 11 LVTKLGSVSEQTRAEALAELRLLSKHDAEI--RPMIS-E-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-----D 81 (315)
Q Consensus 11 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-----~ 81 (315)
+-+.|.|.+...|..|+..|..+....+.. ..... . ....+.+-..+.+.+..++..++.+|..++..-. +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 678999999999999999999887543221 11122 2 2345667778888999999999999877654321 1
Q ss_pred hh--hhhcCchHHHHHH-HhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 82 SL--MSTRGLLDAISHV-LRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 82 ~~--i~~~~~i~~L~~l-L~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
.. ..-...++.|+.= +.+ ....++..+..++..+........ .+++.++..+. +.+|.++..++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~----~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~--~Knpkv~~~~l~ 161 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS----SRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFE--KKLPKLIAAAAN 161 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGG--CSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHh--ccCHHHHHHHHH
Confidence 11 1123356666643 444 567788888888877664222111 22455566667 568999999888
Q ss_pred HHHHhccC--CC--cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 159 ALFGIALY--PL--NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 159 aL~~Ls~~--~~--~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
.|..+... .. +....+ ..+++.+..++. +++..+++.|..++..+-.
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFL-PELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 88876542 11 112221 234566777885 6789999999998888755
No 89
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.91 E-value=0.099 Score=44.11 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcccchh---hhhhcCchHHH
Q 021242 22 TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSITSRDS---LMSTRGLLDAI 93 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~~~~~---~i~~~~~i~~L 93 (315)
-...|+..+..+|.+ ++.|..+.++...--|-.+|+..+ +-+|-.++.+++.+...++.. ...+.+.+|..
T Consensus 72 RVcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 346677777778865 899999999998777888886543 347888999999999876543 33578899999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
++.+.. ++.-.+..|..++..+-.++.+-.-+... ..++..+|.-+.. ..++...++..++-..|+.+
T Consensus 151 Lrime~----GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~-~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 151 LRIMES----GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK-EPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHH----SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhh----ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhcC
Confidence 999998 77788889999999888777654433332 1223333433322 34778888888988888888
Q ss_pred CCcHHHHH
Q 021242 167 PLNRYQVI 174 (315)
Q Consensus 167 ~~~~~~i~ 174 (315)
+..|..+.
T Consensus 226 ~rar~aL~ 233 (268)
T 2fv2_A 226 PRAREALR 233 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776664
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.90 E-value=1.1 Score=45.43 Aligned_cols=261 Identities=10% Similarity=0.095 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc------CCCHHHHHHHHHHHHhcCcccc-hh-hhh----hcC
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY------SSSHAFQENAAATLLNLSITSR-DS-LMS----TRG 88 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~~la~~~~-~~-~i~----~~~ 88 (315)
..|..|...|..++..-+ +.+.. -.++.+-..+. +.+-..++.|+.++..++.+.. .. -+. ...
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 356677777777775532 12211 12233333343 3455688999999988875421 11 000 002
Q ss_pred chHH----HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 89 LLDA----ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 89 ~i~~----L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
..+. ++..|.++. +.++-++..++++|..++..- ....+ ..+++.++..+. +.++.++..|+.+|.+++
T Consensus 452 l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQ--TDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhC--CCChhHHHHHHHHHHHHH
Confidence 2232 334445421 127889999999999998632 12222 245788888887 457889999999999998
Q ss_pred cCC--------C-cHHHHHh--hCCcHHHHHHHhcCC----CcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHh
Q 021242 165 LYP--------L-NRYQVIA--LGGVQPLFSLVVNGG----RAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLL 228 (315)
Q Consensus 165 ~~~--------~-~~~~i~~--~g~v~~L~~lL~~~~----~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll 228 (315)
... + .+..+.. ...+..|+.++.... .....+.++.+|..+... .+....... ..++.++..+
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l 603 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIV 603 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHH
Confidence 742 1 2333321 244555666665321 001224455555554321 111000110 1234444444
Q ss_pred hc--CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 229 DL--GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 229 ~~--~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.. .++.++.....++.++..++....++....+. ...+|.+..+++.+.......+-.++..+..
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~---~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV---DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH---HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH---HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 32 11235666767788888877653322222332 4577888888888766677777776665543
No 91
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.84 E-value=0.068 Score=45.10 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCC--CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHH
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTG--SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA 273 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~ 273 (315)
-.|++.|..++++++.|..|.++...--|...|..... ..+..|-.+.+++..+.+.+.+++...+++ .+.+|..+
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~--tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT--TEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh--hhHHHHHH
Confidence 34788888899999999999998865555556665411 124677789999999998877677788887 78999999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHh
Q 021242 274 DVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 274 ~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
..++.|++..|.-|..+++.+=
T Consensus 152 rime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHh
Confidence 9999999999999999887763
No 92
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.50 E-value=0.54 Score=40.99 Aligned_cols=190 Identities=8% Similarity=-0.002 Sum_probs=108.0
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHH-HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAIS-HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~-~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.+..+.++++ ...+.+.-++.+|+-+..+++ .....+.+.-..++ .++........+..+..+++++.|+-.++..+
T Consensus 104 ~l~~l~kil~-WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAIN-CPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHHT-SCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHHc-CCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 4677788774 444556667777777666654 33433322223333 23322111245667888999999998888777
Q ss_pred hhhhhc-cccHHHHHHHhhccCCChHHHHHHHHHHHHhccC---CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 127 PIIGAK-RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY---PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 127 ~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~---~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
..+... ..+++.+...+. ..+..++..++..+.|++.. ....... ..++..+..++....+.+....++.+|
T Consensus 183 ~~l~~~~~~il~~~~~~~~--~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKS--GSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 766542 233333333333 34677888888999999862 1111111 113444555554335667788888889
Q ss_pred HHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 203 AQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 203 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
.+|...+.....+.+.=++...++-+... ....++.+++-.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~-~~~~kv~~~~~~ 299 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV-SEPAKVSECCRF 299 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC-CSSHHHHHHHHH
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC-CCchhHHHHHHH
Confidence 88876554455555544555555544432 124566655433
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.43 E-value=1.7 Score=43.92 Aligned_cols=222 Identities=10% Similarity=0.066 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHH---h-CCCHH----HHHHHHcCC---CHHHHHHHHHHHHhcCcccchhhhh
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMIS---E-AGSIP----YLAEILYSS---SHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~-~g~i~----~Lv~lL~~~---~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
+.++..+..|+.++..++.........+. . ....+ .++..|.+. .+-+|..|+++|..++..-.+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~-- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHH--
Confidence 55678899999999999753211000000 0 02222 234445655 78899999999999886532222
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC---------chhhhh-hccccHHHHHHHhhccCCC-hH--H
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS---------YRPIIG-AKRDIIHSLIEIIKTRNSP-LR--S 152 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~i~-~~~g~i~~Lv~ll~~~~~~-~~--~ 152 (315)
-...++.++..|.+ ++..++..|+.+|.++....+ .+..+. ....+++.|+.++...... ++ .
T Consensus 494 l~~~l~~l~~~L~d----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 494 LIELMPILATFLQT----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred HHHHHHHHHHHhCC----CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 22356777777775 578899999999999986421 233332 2345566777777731000 11 2
Q ss_pred HHHHHHHHHHhcc--CCCcHHHHHhhCCcHHHHHHHhc---CC-CcchHHHHHHHHHHHhcC--hhhHHHHHhcCCHHHH
Q 021242 153 VKDALKALFGIAL--YPLNRYQVIALGGVQPLFSLVVN---GG-RAGIVEDASAVIAQIAGC--EESVDEFKKCCGIGVL 224 (315)
Q Consensus 153 ~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~L~~lL~~---~~-~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~~i~~L 224 (315)
...+..+|..++. .++....+ ...++.+...+.. ++ +..+...++.+|..+... ++....+. ...+|.+
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~ 646 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTF 646 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHH
Confidence 2345555555443 12221111 1234455555532 22 334555677777777553 33333332 2346777
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
...+... .....+.+..++..+.
T Consensus 647 ~~iL~~~---~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 647 LTVFSED---IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTT---CTTTHHHHHHHHHHHH
T ss_pred HHHHHhh---hHhhHHHHHHHHHHHH
Confidence 7777754 3445555555555443
No 94
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.20 E-value=1.5 Score=38.53 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=143.4
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-Cchh----hhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRP----IIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~----~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
+...+.+..|+..|.. -+-+.+..++.+..++.... .++. .+..... .|.-++.-. +++++-..+-.
T Consensus 74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~pe---il~~L~~gY-e~~diAl~~G~ 145 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQN---ILFMLLKGY-ESPEIALNCGI 145 (341)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTH---HHHHHHHGG-GSTTTHHHHHH
T ss_pred HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHH---HHHHHHHhh-ccchhHhHHHH
Confidence 3477889999999986 57899999998888888633 2222 2222222 222333322 35566677778
Q ss_pred HHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcC---CHHHHHHHhhcCCCC
Q 021242 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCC---GIGVLVDLLDLGTGS 234 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~~ 234 (315)
.|.....++.....++..+.+..+.+.+. .++..+...|..+++.| +.+.....++.+.. .....-++|.++
T Consensus 146 mLRecir~e~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~--- 221 (341)
T 1upk_A 146 MLRECIRHEPLAKIILWSEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE--- 221 (341)
T ss_dssp HHHHHHTSHHHHHHHHHSGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS---
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC---
Confidence 88887778888888888888888999885 57888889999999988 45666666776654 366777788875
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.-.|.+++..|..|-...+ ...-|.++- ..-+..+..++++.+..++-.|=.+.+.+..
T Consensus 222 NYVTkRQSlKLLgelLldr~--N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRH--NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGG--GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhCch--HHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 88899999999999986422 223343321 2346777789999999999999999998875
No 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.83 E-value=1.1 Score=39.01 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=94.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHH----HHHcC-CCHHHHHHHHHHHHhcCcccc-
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLA----EILYS-SSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv----~lL~~-~~~~~~~~a~~~L~~la~~~~- 80 (315)
.+..+...++.+. +.+.-++..++-.+.+ +.....+.+.+.-..++ ..+.+ ..+..+..+++++.|+..+..
T Consensus 104 ~l~~l~kil~WP~-~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAINCPE-DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHHTSCT-TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHHcCCH-HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 4455555554444 5666777777766643 44555555433333444 22222 345678899999999988864
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+.++.. ..+.+++.+.+-....+..++..++..+.|++.. ...+. ..+...++..+..++.. ..+.+....++-+
T Consensus 182 ~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~~~~~~ll~~l~~il~~-~~d~EalyR~LvA 257 (304)
T 3ebb_A 182 QKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-IEGKAQCLSLISTILEV-VQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 554432 1233444443211125778888999999999952 11111 11112234555566654 4577888889999
Q ss_pred HHHhccCCCcHHHHHhh
Q 021242 160 LFGIALYPLNRYQVIAL 176 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~ 176 (315)
|.+|...+.....+.+.
T Consensus 258 LGtL~~~~~~~~~lak~ 274 (304)
T 3ebb_A 258 LGTLISDDSNAVQLAKS 274 (304)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHH
Confidence 99998765444444443
No 96
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.81 E-value=0.58 Score=41.12 Aligned_cols=195 Identities=12% Similarity=0.075 Sum_probs=133.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhH----HHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRP----MISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~----~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~ 80 (315)
+.+..|+..|..-+.+.|..++....++.......+- .+.. --+.|.-++.. .++++--.+-..|+.+..++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHhHH
Confidence 4556677777778889999999988888876654432 3332 12222222222 345555667777888887775
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhh-c-cccHHHHHHHhhccCCChHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGA-K-RDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~-~-~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
.+++...+.+..+.++... ++-++...|..++..|-.. ......+.. . .-++...-+++. +++.-.+..+
T Consensus 156 la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~--S~NYVTkRQS 229 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH--SENYVTKRQS 229 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT--CSSHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc--CCcchhHHHH
Confidence 5555566677788888886 7889888899999987643 322222221 1 245566667888 5688899999
Q ss_pred HHHHHHhccCCCcHHHHHhh----CCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 157 LKALFGIALYPLNRYQVIAL----GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~----g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
++.|..|-.++.|...|.+- .-+..++.+|+ +++..++-.|..+......+|
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc-CchhchhhhhhhheeeeeeCC
Confidence 99999999999988777642 44666778885 677888989998888765443
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.22 Score=42.54 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCc---hhhHHHH--hCCCHHHHHHH-HcCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDA---EIRPMIS--EAGSIPYLAEI-LYSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~--~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
.+-..+..++..++..++.++..++..-. ..+.... -...+|.|+.= +.+..+.++..|..++..+..... ..
T Consensus 59 ~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~ 138 (278)
T 4ffb_C 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT 138 (278)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH
Confidence 34456678889999999999998875321 1122222 24567878764 777788888888888866643221 11
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
. .++.+...+++ .++.++..++..|..+.. +. .....-.....+++.+..++. +.++.++..|..++
T Consensus 139 ~-----~~e~l~~~l~~----Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~--d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 139 Q-----SVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG--HGDRNVRSQTMNLI 207 (278)
T ss_dssp H-----HHHHHGGGGGC----SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT--CSSHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh--CCcHHHHHHHHHHH
Confidence 1 23455555665 688888888888877653 21 111100000134567778888 56899999999998
Q ss_pred HHhcc
Q 021242 161 FGIAL 165 (315)
Q Consensus 161 ~~Ls~ 165 (315)
..+-.
T Consensus 208 ~~ly~ 212 (278)
T 4ffb_C 208 VEIYK 212 (278)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87765
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.41 E-value=0.074 Score=50.10 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=106.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
..+..++..+..+..++|..++-.|.-+ ++ .+. =.++++.++..|++.|.+++..|+.+|..++ ..+ .
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D------LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~-~-- 331 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-KE------FVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITD-S-- 331 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG------GCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSS-T--
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH-HH------HHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chh-h--
Confidence 4455666666788899999999998877 11 111 2566888888889999999999999999998 111 1
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
-...+..+++.|.+.. +-..........|..|...+... .....++|.|...++ +.-+.++..++++|..+.
T Consensus 332 -l~~LL~iLWd~L~~LD--DLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLR--HtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 332 -LDLVLEKCWKNIESEE--LISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFT--SPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp -HHHHHHHHHHHHHTCC--SCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGT--CSSHHHHHHHHHHTTTCC
T ss_pred -HHHHHHHHHHHhhhhc--ccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhc--CCcHHHHHHHHHHHHHHH
Confidence 1124667777776410 00011223444555555434321 112366899999999 557899999999998877
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
...+++.+.+-+.-+++.++++.+..+-.
T Consensus 404 ----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11223333333322356667766666553
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.33 E-value=3.5 Score=41.42 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH---cCCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCch
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---YSSSHAFQENAAATLLNLSITS-R-DSLMSTRGLL 90 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i 90 (315)
.+.++..+..++.++..++..-... +...++.++..+ .++++.++..+++++..++..- . .+. -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHH
Confidence 5567889999999999998653221 123455566555 2356889999999999887542 1 222 23577
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC--
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-- 167 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-- 167 (315)
+.|+..|.+ +.++..|+.++.+++.. .+..+ .....++..|..++.....+...+..+..++..+...-
T Consensus 532 ~~l~~~l~~------~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 532 PLVLHALGN------PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp HHHHHHTTC------GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHhCC------chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 888877753 46788999999999852 22222 22234556666777632235677788888888887632
Q ss_pred CcHHHHHhhCCcHHHHHHH
Q 021242 168 LNRYQVIALGGVQPLFSLV 186 (315)
Q Consensus 168 ~~~~~i~~~g~v~~L~~lL 186 (315)
+.....+ ...++++...+
T Consensus 604 ~~~~~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 604 EEILKNL-HSLISPYIQQL 621 (963)
T ss_dssp HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 2233222 34455555544
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.23 E-value=0.71 Score=39.34 Aligned_cols=173 Identities=12% Similarity=0.072 Sum_probs=110.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----cCCCHHHHHHHHHHHHhcCcc-cch--h
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----YSSSHAFQENAAATLLNLSIT-SRD--S 82 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~-~~~--~ 82 (315)
.+...|-+.+...+.+|+..|......++ +.+.. .+..+++.+ .+++..+...++.+|..+... .+. +
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44556667788899999999998765433 22221 233334433 367888888888888665321 111 1
Q ss_pred hh-h-hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LM-S-TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i-~-~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
+. . ..-.+|.|+.-+-+ +.+.++..+-.++..+... ... ..+++.++.-++ +.+...+..++..+
T Consensus 125 ~~~~ea~~~lP~LveKlGd----~k~~vR~~~r~il~~l~~v------~~~-~~v~~~l~~g~k--sKN~R~R~e~l~~l 191 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGE----AKDNMRTSVRDIVNVLSDV------VGP-LKMTPMLLDALK--SKNARQRSECLLVI 191 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHH------HCH-HHHHHHHHHGGG--CSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHH------CCH-HHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 11 0 12357777777755 5677888777777666531 111 234677777777 45788888898888
Q ss_pred HHhccCCCcHHHHHhhCCc---HHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 161 FGIALYPLNRYQVIALGGV---QPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~~g~v---~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
..+-...-.. ...++ +.+..++. +++..++..|+.++..+
T Consensus 192 ~~li~~~G~~----~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 192 EYYITNAGIS----PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHHCSG----GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC----ccccccchHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 8775421111 24568 99999995 68889999998888765
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.76 E-value=0.82 Score=38.97 Aligned_cols=187 Identities=13% Similarity=0.057 Sum_probs=110.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh--cCCCCCCHHHHHHHHHHHHHhhc---CCCc
Q 021242 51 PYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR--HHSTSTSSAAVQSSAATLHSLLV---VDSY 125 (315)
Q Consensus 51 ~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~--~~~~~~~~~~~~~a~~~L~~Ls~---~~~~ 125 (315)
+-+...+.+.|.+-+..|+..|..........++ ..++.+++.+. -. ..+..+...+..+|..+.. ..+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~--d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFF--ETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTT--SCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666677888888888888664332223333 13444555442 11 1467777777777777642 2222
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQ 204 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~ 204 (315)
+..-.+..-++|.|+.=+. +....++..+-.+|..++. .+ ....++.++.-+. +.+...++.++..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlG--d~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~k-sKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTG--EAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALK-SKNARQRSECLLVIEY 193 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHc-cCCHHHHHHHHHHHHH
Confidence 2222222456888888776 4456677666666655543 11 1234455666664 4567777888877777
Q ss_pred HhcChhhHHHHHhcCCH---HHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHH
Q 021242 205 IAGCEESVDEFKKCCGI---GVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAE 259 (315)
Q Consensus 205 L~~~~~~~~~i~~~~~i---~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 259 (315)
+-.. .|.. ...++ +.+.+++.+. +..++..|..++..+....++....
T Consensus 194 li~~-~G~~---~~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 194 YITN-AGIS---PLKSLSVEKTVAPFVGDK---DVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHH-HCSG---GGGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHh-cCCC---ccccccchHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6221 1111 23357 8888899865 8899999999988876654444433
No 102
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.52 E-value=0.98 Score=40.01 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred HHhcCcccchhh--hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCC
Q 021242 72 LLNLSITSRDSL--MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSP 149 (315)
Q Consensus 72 L~~la~~~~~~~--i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~ 149 (315)
|.++-.++.+.+ +++.+|+..+..+... ++.++....+..|...+....-+.. .-...+|.++..+.. +++
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinY----pN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~-h~e 338 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQY----PNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEI-HPD 338 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHH-CCC
T ss_pred HHHHHhcccccccceeecccceeEEEEeec----CCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhcc-CCC
Confidence 456666765432 4588999999999987 6778887888888776654332221 112448999998886 578
Q ss_pred hHHHHHHHHHHHHhccCCC-cHHHHHhhCCcHHHHHHHhcCC------CcchHHHHHHHHHHH
Q 021242 150 LRSVKDALKALFGIALYPL-NRYQVIALGGVQPLFSLVVNGG------RAGIVEDASAVIAQI 205 (315)
Q Consensus 150 ~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~v~~L~~lL~~~~------~~~~~~~a~~~L~~L 205 (315)
+++.-...+.|.|...+.. .+...+..|+++.|-+.+...+ +..-+..+|++++|.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 8999999999999988764 5556678999999988885422 122245588888873
No 103
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.24 E-value=1.3 Score=36.92 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=98.6
Q ss_pred ccccHHHHHHHhhcc--C-------CChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 132 KRDIIHSLIEIIKTR--N-------SPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~--~-------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
.+| +..|+.+|... . .+......++++|..+.-++.....++. .+++..+...|. .++..++..++.+
T Consensus 42 ~~G-l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~r~~~leL 119 (233)
T 2f31_A 42 AEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKL 119 (233)
T ss_dssp HHH-HHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 356 77888777631 0 1345567888999988877777777765 467888887774 4667788889999
Q ss_pred HHHHhcChh--h-HHHHHhc--------C--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHH
Q 021242 202 IAQIAGCEE--S-VDEFKKC--------C--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKE 263 (315)
Q Consensus 202 L~~L~~~~~--~-~~~i~~~--------~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~ 263 (315)
|..+|..+. | ...+.++ + -...+++.++.. .....+-.+...+..+.....+ ..+.++..
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR 197 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC--ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 998887643 6 5555432 1 256677777643 3566777777777777654433 23455555
Q ss_pred HccCcHHHHHHHHhhCCHHHHHHHH
Q 021242 264 MAMQVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 264 ~~~g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
.|..+.+-.+-..+++.....-.
T Consensus 198 --~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 198 --LGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp --TTHHHHHHHHHHCCCHHHHHHHH
T ss_pred --CChHHHHHHHhccCCHHHHHHHH
Confidence 67777666666557777665443
No 104
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.41 E-value=0.053 Score=45.84 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=27.8
Q ss_pred ChhHHHHHHHH-----HHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 235 GHRVKENAVSA-----LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 235 ~~~~~~~a~~~-----L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
+..++..+... |..+..+....++..+.+ .-+.+.|..+ ++.++.|+..|..
T Consensus 183 d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~--~l~~~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 183 EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVE--HASLEALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHH--HSCHHHHHHC-CCCCHHHHHHHHC
T ss_pred CHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHH--cCCHHHHHHc-cCCCHHHHHHHHH
Confidence 44555444422 233333333345555555 2224555556 7778999988865
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.26 E-value=4.3 Score=37.43 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISH 95 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~ 95 (315)
..+++..++-|+..|..+-++-|+ .+..+|..++++..+.|..+|..|++.|..+|.+ + .+ ....+.|.+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~-----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~--~i--~kiaDvL~Q 107 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPE-----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-E--NL--PRVADILTQ 107 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGG-----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T--CH--HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h--hh--hhHHHHHHH
Confidence 345678999999999999888887 3445688999999999999999999999999987 2 11 124677889
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 96 VLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 96 lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
+|+. +.+.-....-.+|..|-..+. .+.+..|+.-+. .+++.+++.++.-|..
T Consensus 108 lLqt----dd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~--~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQT----DDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQIL--QGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred HHhc----cchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHc--ccchHHHHHHHHHHHH
Confidence 9986 443333344444444443221 233555666555 3466777777777753
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.60 E-value=2.9 Score=42.19 Aligned_cols=217 Identities=11% Similarity=0.026 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH---c--CCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCch
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---Y--SSSHAFQENAAATLLNLSITS-R-DSLMSTRGLL 90 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i 90 (315)
.++..+..|+.++..++..-.... ...++.++.++ . +.++.++..++++|..++..- + .+.+ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 466789999999999975432211 23455555544 3 237889999999999887432 1 2111 1245
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC--C
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY--P 167 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~--~ 167 (315)
+.|+..|. +.++..|+.++.+++... +..+ .....++..|..++..+..+...+..+..++..++.. +
T Consensus 549 ~~l~~~l~-------~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 549 NLLVRGLN-------SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHHHH-------SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHhC-------hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 55555552 245778999999998432 2222 2334566677777774223567777888888887653 2
Q ss_pred CcHHHHHhhCCcHHHHHHHhc---CC--CcchHHHHHHHHHHHh---cC--h---hhH------HHH--HhcCCHHHHHH
Q 021242 168 LNRYQVIALGGVQPLFSLVVN---GG--RAGIVEDASAVIAQIA---GC--E---ESV------DEF--KKCCGIGVLVD 226 (315)
Q Consensus 168 ~~~~~i~~~g~v~~L~~lL~~---~~--~~~~~~~a~~~L~~L~---~~--~---~~~------~~i--~~~~~i~~Lv~ 226 (315)
+.....+ ...+++++..+.. .+ +.+........+..|+ .. + ++. ..+ .....++.+..
T Consensus 620 ~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 698 (971)
T 2x1g_F 620 EEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698 (971)
T ss_dssp THHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHH
Confidence 4443333 2344455444321 11 2212233333333332 11 0 000 001 11234666666
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 227 LLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 227 ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
++... ..+..+.+.++.++..++..
T Consensus 699 ~l~~~-~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 699 IAEMW-VEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHh
Confidence 66542 13668888999998887653
No 107
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.59 E-value=8.9 Score=38.60 Aligned_cols=275 Identities=10% Similarity=0.017 Sum_probs=138.1
Q ss_pred hhHHHHHHHh---C--CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKL---G--SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
..++.+++.+ . .+++.+|..++++|..++..-..+...+ ..+++.|+..| + +.++..|+.++.+++..-+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 3455555544 4 2478999999999998875322211111 13456666666 2 6789999999999985543
Q ss_pred hhhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-C-CchhhhhhccccHHHHHHHhhcc--CC--ChHHH
Q 021242 81 DSLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-D-SYRPIIGAKRDIIHSLIEIIKTR--NS--PLRSV 153 (315)
Q Consensus 81 ~~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~ll~~~--~~--~~~~~ 153 (315)
..+. .-...+..+..++..+. ...+.+.....++..++.. + +...... ..++++++..+..- .. +++..
T Consensus 576 ~~l~p~~~~ll~~l~~~l~~~~--~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~ 651 (971)
T 2x1g_F 576 LQLKPYADPLLNACHASLNTGR--MKNSDSVRLMFSIGKLMSLLRPEEIPKYL--DIIVSPCFEELQAICQADSKTPAAR 651 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT--SCHHHHHHHHHHHHHHHHTSCTTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHH
T ss_pred HhccccHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhH
Confidence 3321 12345666667776521 2456777777888877642 2 2222211 23455555544310 11 22222
Q ss_pred H---HHHHHHHHhccC--C---Cc------HH--HHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 154 K---DALKALFGIALY--P---LN------RY--QVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 154 ~---~a~~aL~~Ls~~--~---~~------~~--~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
. .++..|..+... + ++ .. .-+....++.+..++... .+..+.+.++++++.++..- ...+
T Consensus 652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~--~~~~- 728 (971)
T 2x1g_F 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL--RSSF- 728 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--HC---
T ss_pred HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh--hhhc-
Confidence 2 333344333221 1 00 00 112356778777777533 25578999999999875521 0111
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHH--HHHHHHHHccCcHHHHHHHHhh-------CCHHHHHHH
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGER--AAEEVKEMAMQVADGIADVAQN-------GSAKGKTKA 287 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~i~~~~~g~~~~L~~ll~~-------~~~~~k~~A 287 (315)
...++.++..+..... .... ..+++++..++...+.+ ....+.+.-...+..+..++.. +.|++++..
T Consensus 729 -~p~l~~~~~~l~~~~~-~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~ 805 (971)
T 2x1g_F 729 -QPMLQDLCLFIVASFQ-TRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETF 805 (971)
T ss_dssp -CTHHHHHHHHHHHHCC---CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHH
T ss_pred -cccHHHHHHHHHHHHh-cCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHH
Confidence 1126666665543211 1111 24566666665532221 1112211001233444444443 367777777
Q ss_pred HHHHHHHh
Q 021242 288 VALLKILV 295 (315)
Q Consensus 288 ~~~L~~l~ 295 (315)
-.++..+-
T Consensus 806 f~ll~~~l 813 (971)
T 2x1g_F 806 FGCLTQII 813 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.55 E-value=3 Score=37.48 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=97.7
Q ss_pred ccccHHHHHHHhhcc---------CCChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 132 KRDIIHSLIEIIKTR---------NSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~---------~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
.+| +..|+.+|... ..+......++++|..+.-+......++. ..++..+...|. .++..++..++.+
T Consensus 108 ~~G-l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~~~~aleL 185 (383)
T 3eg5_B 108 AEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKL 185 (383)
T ss_dssp HHH-HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSHHHHHHHHHH
T ss_pred Hcc-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 457 78888888521 12346667888999998877777777776 477888888884 4667788889999
Q ss_pred HHHHhcChh--h-HHHHHhc----------CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHH
Q 021242 202 IAQIAGCEE--S-VDEFKKC----------CGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKE 263 (315)
Q Consensus 202 L~~L~~~~~--~-~~~i~~~----------~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~ 263 (315)
|..+|..+. | ...+.++ .-...++..+..+ .+...+-.++..+..+.....+ ..+.++.+
T Consensus 186 L~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~--~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 263 (383)
T 3eg5_B 186 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR 263 (383)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc--CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999987543 3 5555432 1267778877753 3667776677766666654332 23455555
Q ss_pred HccCcHHHHHHHHhhCCHHHHHH
Q 021242 264 MAMQVADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 264 ~~~g~~~~L~~ll~~~~~~~k~~ 286 (315)
.|..+.+-.+-..+++.+...
T Consensus 264 --~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 264 --LGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp --TTHHHHHHHHTTSCCHHHHHH
T ss_pred --CChHHHHHHHhcCCChhHHHH
Confidence 677776666544456655543
No 109
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.44 E-value=3 Score=37.57 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=97.5
Q ss_pred cccHHHHHHHhhcc-----C----CChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 133 RDIIHSLIEIIKTR-----N----SPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~-----~----~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
+| +..|+.+|... . .+......++++|..+.-+......++. .+++..+...|. .++..++..++.+|
T Consensus 47 ~G-l~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~-s~~~~~r~~vleLL 124 (386)
T 2bnx_A 47 EG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKLL 124 (386)
T ss_dssp HH-HHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 56 77788777531 0 1345667888999998877777777665 477888888874 45667777888899
Q ss_pred HHHhcChh--h-HHHHHhc--------C--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHHH
Q 021242 203 AQIAGCEE--S-VDEFKKC--------C--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKEM 264 (315)
Q Consensus 203 ~~L~~~~~--~-~~~i~~~--------~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~~ 264 (315)
..+|..+. | ...+.++ + -...++..+..+ .+...+-.++..+..+.....+ ..+.++..
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~- 201 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR- 201 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT--SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC--ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-
Confidence 98888643 6 5544331 1 256788888753 3667777777777777664433 23456655
Q ss_pred ccCcHHHHHHHHhhCCHHHHHHH
Q 021242 265 AMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 265 ~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.|..+.|-.+-..+++.+...-
T Consensus 202 -~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 202 -LGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp -TTHHHHHHHHTTCCCHHHHHHH
T ss_pred -CChHHHHHHHhccCChhHHHHH
Confidence 6776666656555677665543
No 110
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.39 E-value=4.4 Score=35.95 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHH
Q 021242 29 ELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAA 108 (315)
Q Consensus 29 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~ 108 (315)
.|.++.-++....+-+++.+++..+...+...+.++.+.+...|...+....--..--.+.+|.+++.+.-+ +.+++
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L~e~LPFi~~~i~~h---~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLENILPFLLRLIEIH---PDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCCTTHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccccccchHHHHHhccC---CCcce
Confidence 344556677777889999999999999999999999999999998887544311222345789999999743 78899
Q ss_pred HHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhc
Q 021242 109 VQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKT 145 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~ 145 (315)
.-...+.|.|...+.. .+..-.. .++|+.|-..+..
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~k 378 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHHT
T ss_pred EEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHhh
Confidence 9999999999876554 3443333 3669999988864
No 111
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.30 E-value=9.7 Score=34.11 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=103.7
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHhcC
Q 021242 10 SLVTKLGSVS-EQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYS-----------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 10 ~Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~la 76 (315)
..|+.|.++. .+...+.+..|+.-...++..+ +.+. .+|+..|+..|.. .+...+..++.+|..+-
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3556666553 2323345666665544444443 5565 7789999999842 23467788888998887
Q ss_pred cccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c-hhhh----------hhccccHHHHHH
Q 021242 77 ITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y-RPII----------GAKRDIIHSLIE 141 (315)
Q Consensus 77 ~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~ 141 (315)
.+.. ..++..+.++..|...|.+ ..+.++..+...|.-++..++ + ...+ ++..- +..++.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s----~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~R-F~~lv~ 223 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVER-FQPLLD 223 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCT-THHHHH
T ss_pred cchhhHHHHHcChHHHHHHHHHhCC----CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCc-HHHHHH
Confidence 6643 4566678889999998886 678889889999988886543 3 2211 22222 567788
Q ss_pred HhhccCCChHHHHHHHHHHHHhccCCCc-------HHHHHhhCCcHHHHHHHhc
Q 021242 142 IIKTRNSPLRSVKDALKALFGIALYPLN-------RYQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 142 ll~~~~~~~~~~~~a~~aL~~Ls~~~~~-------~~~i~~~g~v~~L~~lL~~ 188 (315)
.++. ..+.+.+..++..+-.+...++. |..+...|..+ +++-++.
T Consensus 224 ~L~~-~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~-il~~lr~ 275 (383)
T 3eg5_B 224 GLKS-GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE 275 (383)
T ss_dssp TTST-TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred HHHc-cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHH-HHHHHhc
Confidence 7773 24556655555444444444432 23344455555 4444653
No 112
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.80 E-value=21 Score=35.77 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=121.0
Q ss_pred cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccH
Q 021242 58 YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDII 136 (315)
Q Consensus 58 ~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i 136 (315)
.+.+...++.++.++..++..-... ....++.++..+..-. .+++.++..+++++..++.. ......+ ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~---~~~~l~~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~~~~l---~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN---YSDVVPGLIGLIPRIS-ISNVQLADTVMFTIGALSEWLADHPVMI---NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS---CCSHHHHHHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHCHHHH---TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch---hhHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhCHHHH---HHHH
Confidence 3456678899999999988663211 1234555666553211 14678889999999998853 2222222 3568
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHh--hCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcC-h-hh
Q 021242 137 HSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA--LGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGC-E-ES 211 (315)
Q Consensus 137 ~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~-~-~~ 211 (315)
+.|+..+. ++.++..|+.+|.+++..- +..+.. ...+..+..++.+. .+...+..++.++..++.. + +.
T Consensus 532 ~~l~~~l~----~~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 532 PLVLHALG----NPELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp HHHHHHTT----CGGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHhC----CchHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 88888886 3788899999999999531 222221 13333445555421 1234566677777777542 2 33
Q ss_pred HHHHHhcCCHHHHHHHhhc--CCCCChhHHHH---HHHHHHHHhccCCH---------------------HHHHHHHHHc
Q 021242 212 VDEFKKCCGIGVLVDLLDL--GTGSGHRVKEN---AVSALLNLVNFGGE---------------------RAAEEVKEMA 265 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~--~~~~~~~~~~~---a~~~L~~l~~~~~~---------------------~~~~~i~~~~ 265 (315)
.....+ ..++.+...+.. ....++..+.. ...+|..+.+.-.. .....+.
T Consensus 606 ~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 681 (963)
T 2x19_B 606 ILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--- 681 (963)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH---
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH---
Confidence 333332 223333333321 00124444432 33333333321110 0111122
Q ss_pred cCcHHHHHHHHhh--CCHHHHHHHHHHHHHHhh
Q 021242 266 MQVADGIADVAQN--GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 266 ~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l~~ 296 (315)
....+.+..+++. .++.+.+.+..+++.+..
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 3456666666664 478899989888887654
No 113
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.43 E-value=9.6 Score=31.47 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=89.7
Q ss_pred HHHhCCC-CHHHHHHHHHHHHHHhccCchh-hHHHHhCCCHHHHHHHHcC----C-------CHHHHHHHHHHHHhcCcc
Q 021242 12 VTKLGSV-SEQTRAEALAELRLLSKHDAEI-RPMISEAGSIPYLAEILYS----S-------SHAFQENAAATLLNLSIT 78 (315)
Q Consensus 12 v~~L~~~-~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~la~~ 78 (315)
|+.|++. .++.-.+-+..|+.-...++.. -+.+ ..+|+..|+..|.. . +.+.+..++.+|..+..+
T Consensus 6 i~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~ 84 (233)
T 2f31_A 6 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 84 (233)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence 4555544 2332234455555444444444 3455 57889999999853 1 345677888888888765
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c-hhhh----------hhccccHHHHHHHh
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y-RPII----------GAKRDIIHSLIEII 143 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~ll 143 (315)
.. ..++..++++..|...|.+ .++.++..+...|.-++..++ + ...+ .+.. -+..+++.+
T Consensus 85 ~~G~~~vl~~~~~i~~l~~~L~s----~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~-RF~~lv~~l 159 (233)
T 2f31_A 85 KFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVE-RFQPLLDGL 159 (233)
T ss_dssp HHHHHHHHTSSSHHHHHHTTCCT----TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSC-TTHHHHHTT
T ss_pred hHHHHHHHcCcHHHHHHHHHhCC----CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcc-hHHHHHHHH
Confidence 43 4566677788888888875 678888889888888886443 3 2222 1111 245677766
Q ss_pred hccCCChHHHHHHHHHHHHhccCCC
Q 021242 144 KTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 144 ~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
.. .++.+.+..++..+-.+...++
T Consensus 160 ~~-~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 160 KS-GTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp ST-TSCHHHHHHHHHHHHHHHTTCC
T ss_pred hc-CChHHHHHHHHHHHHHHHCCCC
Confidence 63 2445555544444444444443
No 114
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.16 E-value=21 Score=36.60 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=130.1
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCccc------
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITS------ 79 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~------ 79 (315)
.+..++..+-+++++.|..|-..|..+-+ +++... .+..+|. +.++.+|..|+.+|.+.....
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 34556666667788888888888888754 355433 3333343 457889999999997765432
Q ss_pred chhhhhhcCchHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 80 RDSLMSTRGLLDAISHVLRHHS-TSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 80 ~~~~i~~~~~i~~L~~lL~~~~-~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
+.+...+...+..+.+.-..+. ...++.+....+.++..++. .++ . . ..+++-++..+.. ++......
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~--W---p~fi~dLv~~~~~---~~~~~~~~ 169 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-H--W---PTFISDIVGASRT---SESLCQNN 169 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-T--C---TTHHHHHHHHHHH---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-h--c---cHHHHHHHHHhCC---CHHHHHHH
Confidence 1122223334444444432210 00234555667777777774 222 1 1 3568888888762 45566777
Q ss_pred HHHHHHhccC--C-------Cc-----HHHHHhhCCcHHHHHHH----hcCCCcchHHHHHHHHHHHhcChhhHHHHHhc
Q 021242 157 LKALFGIALY--P-------LN-----RYQVIALGGVQPLFSLV----VNGGRAGIVEDASAVIAQIAGCEESVDEFKKC 218 (315)
Q Consensus 157 ~~aL~~Ls~~--~-------~~-----~~~i~~~g~v~~L~~lL----~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 218 (315)
++.|..|+.. + .. +..+.+ -++.++.++ .+..+..+...++.+|.....+-. ...+.+.
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~ 246 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFET 246 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccc
Confidence 8888777642 1 01 112222 255555544 333456677778899998888743 2346666
Q ss_pred CCHHHHH-HHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 219 CGIGVLV-DLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 219 ~~i~~Lv-~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
+.++.++ ..+. ++..+..|+.+|..+...
T Consensus 247 ~ll~~L~~~~L~-----~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 247 KLISTLIYKFLN-----VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SHHHHHHHHTSS-----SHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhcC-----ChHHHHHHHHHHHHHHhc
Confidence 6677664 5554 678999999999998764
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.85 E-value=34 Score=35.05 Aligned_cols=137 Identities=11% Similarity=0.087 Sum_probs=74.1
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh----cCCCchh-hhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLL----VVDSYRP-IIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls----~~~~~~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.+..+..+++++....++.++..+.-++..|. .....+. .+. .-+...|...+. .++..-+..++++|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v--~~i~~~l~~~~~--~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL--QPLHDLLSQSSD--RAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT--HHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH--HHHHHHHHHHHh--cCChHHHHHHHHHhhcc
Confidence 45566666654211135556655555555554 2222221 111 122334444445 45667778899999997
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcC----CC--cchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCCh
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNG----GR--AGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~----~~--~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~ 236 (315)
-. + ..++.+.+++... .+ ..++..|+.+|+.++.. +.. + -+.++++..+. ..+.
T Consensus 468 g~-p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---v-----~~il~~i~~n~-~e~~ 528 (1056)
T 1lsh_A 468 GQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---V-----QEIVLPIFLNV-AIKS 528 (1056)
T ss_dssp TC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---H-----HHHHHHHHHCT-TSCH
T ss_pred CC-h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---H-----HHHHHHHhcCC-CCCh
Confidence 75 2 3466666666421 12 23556688888888642 111 1 24556666543 2477
Q ss_pred hHHHHHHHHHHH
Q 021242 237 RVKENAVSALLN 248 (315)
Q Consensus 237 ~~~~~a~~~L~~ 248 (315)
++|-.|+.+|..
T Consensus 529 EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 529 ELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776655
No 116
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.83 E-value=2.2 Score=33.40 Aligned_cols=71 Identities=6% Similarity=0.082 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNL 75 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l 75 (315)
+..+..+...|+++++.++..|+..|-.+.++. +.-...+.....+..|+.++.. .++.+++.++..+..-
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 456778888899999999999999999998873 4455677777888889998875 5678999998888443
No 117
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.32 E-value=3.5 Score=42.13 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHhccCCCcH-HHHHhhCCcHHHHHHHhcCC--Cc--chHHHHHHHHHHHhcChhhHHHHHhcCCHH
Q 021242 148 SPLRSVKDALKALFGIALYPLNR-YQVIALGGVQPLFSLVVNGG--RA--GIVEDASAVIAQIAGCEESVDEFKKCCGIG 222 (315)
Q Consensus 148 ~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~--~~--~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~ 222 (315)
.+...++.++.+++.++...... ..-.-..+++.|+.++.+.. +. .++..+++++...+.+-.....+. ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 46788889999999998755432 22222456677787775211 12 233456677776655322212221 12244
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 223 VLVDLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 223 ~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.++..+.. .++++++.|++++..||..
T Consensus 544 ~L~~~l~~---~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 544 KLFEFMHE---THEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHTTC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc---CCHHHHHHHHHHHHHHHHH
Confidence 45555543 2678999999999999963
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.59 E-value=5.1 Score=40.96 Aligned_cols=141 Identities=11% Similarity=-0.013 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC---CCHH--HHHHHHHHHHhcCcccc--hhhhhhcCch
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS---SSHA--FQENAAATLLNLSITSR--DSLMSTRGLL 90 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~--~~~~a~~~L~~la~~~~--~~~i~~~~~i 90 (315)
.+...+..+++++..+++.-.+....-.-..+++.|+.++.. .++. ++..++++|+..+.--. ... =...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHHH
Confidence 578999999999999986532222211223457778887753 1233 44567788877753211 111 11134
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhh-----hccccHHHHHHHhhc--cCCChHHHHHHHHHHHHh
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIG-----AKRDIIHSLIEIIKT--RNSPLRSVKDALKALFGI 163 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-----~~~g~i~~Lv~ll~~--~~~~~~~~~~a~~aL~~L 163 (315)
..|+..+.. .++.+...||+++.+|+.. ++..+. +...+++.++..+.. ..-++.....+..++..+
T Consensus 543 ~~L~~~l~~----~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 543 LKLFEFMHE----THEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHTTC----SCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc----CCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444444443 4678999999999999963 222221 111244544443321 023556667777777777
Q ss_pred ccC
Q 021242 164 ALY 166 (315)
Q Consensus 164 s~~ 166 (315)
...
T Consensus 617 i~~ 619 (1023)
T 4hat_C 617 ISE 619 (1023)
T ss_dssp HTT
T ss_pred HHh
Confidence 764
No 119
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.70 E-value=2.6 Score=32.35 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
-+..+..+...|+++++.++..|+..|-.+.++. +.-...+....++..|++++.. .++.+++.++..+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999873 4456777788889999999863 36789999988885443
No 120
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.06 E-value=20 Score=33.09 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhh-cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHH
Q 021242 104 TSSAAVQSSAATLHSLL-VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPL 182 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L 182 (315)
++...+..|+..|...- .+++. .+ .+|..++++++ +++..++..|.+.|..+|.+ ++..++ +..|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l----~~--~Ai~a~lDLcE--Ded~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL 105 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPEL----AD--SAINAQLDLCE--DEDVSIRRQAIKELPQFATG-ENLPRV-----ADIL 105 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGG----HH--HHHHHHHHHHT--CSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh----HH--HHHHHHHHHHh--cccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHH
Confidence 57888999998888765 45552 22 23899999999 67999999999999999998 665555 5678
Q ss_pred HHHHhc
Q 021242 183 FSLVVN 188 (315)
Q Consensus 183 ~~lL~~ 188 (315)
.++|..
T Consensus 106 ~QlLqt 111 (507)
T 3u0r_A 106 TQLLQT 111 (507)
T ss_dssp HHHTTC
T ss_pred HHHHhc
Confidence 899964
No 121
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.26 E-value=3 Score=32.89 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
+..+..|...|+++++.++..|+..|-.+.++. ..-...+.....+..|+.++.. .++.+++.++..+..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999874 3456677788889999999963 35789999999885443
No 122
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=82.03 E-value=28 Score=31.13 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=101.9
Q ss_pred HHHHhCCCC-HHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcC-------C----CHHHHHHHHHHHHhcCc
Q 021242 11 LVTKLGSVS-EQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYS-------S----SHAFQENAAATLLNLSI 77 (315)
Q Consensus 11 Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~-------~----~~~~~~~a~~~L~~la~ 77 (315)
.|+.|.+.. ..--.+-+..|+.....++..+ +.+. .+|+..|+..|.. . +...+..++.+|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 345555543 2222234555554444444443 4554 6789999988842 1 34567888889988876
Q ss_pred ccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c-hhhh----------hhccccHHHHHHH
Q 021242 78 TSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y-RPII----------GAKRDIIHSLIEI 142 (315)
Q Consensus 78 ~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~l 142 (315)
+.. ..++..+.++..|...|.+ .++.++..+...|.-++..++ + ...+ .+. .-+..+|+.
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s----~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~ 162 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDG 162 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHH
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCC----CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCch-hhHHHHHHH
Confidence 642 4566677889888888875 678888888888888876443 3 2111 121 225568887
Q ss_pred hhccCCChHHHHHHHHHHHHhccCCCc-------HHHHHhhCCcHHHHHHHhcCCCcch
Q 021242 143 IKTRNSPLRSVKDALKALFGIALYPLN-------RYQVIALGGVQPLFSLVVNGGRAGI 194 (315)
Q Consensus 143 l~~~~~~~~~~~~a~~aL~~Ls~~~~~-------~~~i~~~g~v~~L~~lL~~~~~~~~ 194 (315)
+.. ..+.+.+..++..+-.+...++. |..+...|..+ +++-|+...++.+
T Consensus 163 l~~-~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr~~~~~~L 219 (386)
T 2bnx_A 163 LKS-GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDM 219 (386)
T ss_dssp TST-TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCCCHHH
T ss_pred HHc-CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHhccCChhH
Confidence 764 34556655555555455554442 33444445544 5556653334433
No 123
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=81.82 E-value=3.6 Score=31.29 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCC--------HHHHHHHHHHHH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGS--------AKGKTKAVALLK 292 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~--------~~~k~~A~~~L~ 292 (315)
+..|.+-|... ++.++..|+.+|..||..++++....+.+ ....|+.+...---++ ..||..|..++.
T Consensus 51 m~~L~kRL~~k---~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~-~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 51 SEFILKRLDNK---SPIVKQKALRLIKYAVGKSGSEFRREMQR-NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHTSS---SHHHHHHHHHHHHHHTTTSCHHHHHHHHH-TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CcceeehHHHHHHHHHHhCCHHHHHHHHH-hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 35666677765 78899999999999999998888778776 3444555543322212 589999999999
Q ss_pred HHhhCCC
Q 021242 293 ILVDDGN 299 (315)
Q Consensus 293 ~l~~~~~ 299 (315)
.|.++..
T Consensus 127 ll~d~~~ 133 (140)
T 1vdy_A 127 AIFSEEN 133 (140)
T ss_dssp HHTCCSS
T ss_pred HHhCcCC
Confidence 9977543
No 124
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.78 E-value=47 Score=33.63 Aligned_cols=262 Identities=14% Similarity=0.084 Sum_probs=138.5
Q ss_pred HHHHHH-HhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHhcCcc--cc
Q 021242 8 VRSLVT-KLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS---SHAFQENAAATLLNLSIT--SR 80 (315)
Q Consensus 8 i~~Lv~-~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~la~~--~~ 80 (315)
|...++ .+.. ++++.|.+|-..|..+-+. ++ +......+|.+. ++.++..|+.+|.+.-.. .+
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 444442 3333 3789999999999888654 44 345556666543 678999999988654331 11
Q ss_pred hhhhhhcCchHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCCh-HHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHS-TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPL-RSVKDALK 158 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~-~~~~~a~~ 158 (315)
.......+.-..|+.++.... ..+..-++...+.+|..+...... . .=..+++-|+.++... ++ ......++
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~~i~~l~~~~~~~--~~~~~~~~~Lr 151 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S---NWNDFFASLQGVIAAS--SQSEFSNFYLK 151 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHHHH--CCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c---cCchHHHHHHHHhcCC--ChhHHHHHHHH
Confidence 000001122333444444211 013445667777777777742210 0 1135688888888742 33 45566777
Q ss_pred HHHHhccC---C---C-----c-----HHHHHhh---CCcHHHHHHHhc---CCCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 159 ALFGIALY---P---L-----N-----RYQVIAL---GGVQPLFSLVVN---GGRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 159 aL~~Ls~~---~---~-----~-----~~~i~~~---g~v~~L~~lL~~---~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
+|..|+.. . . . +..+.+. -+++....+|.+ ..+..+...++.+|.....+-. ...+.
T Consensus 152 iL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~ 230 (980)
T 3ibv_A 152 VLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIV 230 (980)
T ss_dssp HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHH
T ss_pred HHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhh
Confidence 77754421 1 1 1 1222221 113334444432 2355667777777777665432 33455
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-HHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHH
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-RAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLK 292 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~ 292 (315)
+...++.+.+++. ++..++.|+.+|..+.....+ ..+..+++ ..+..+.+-.+.. .+|++..+.-++++.
T Consensus 231 ~~~ll~~l~~~L~-----~~~~r~~A~ecL~ei~~k~~~~~~k~~li~-~l~L~~~~~~l~~~~~D~d~~~~la~L~~ 302 (980)
T 3ibv_A 231 NEPCMNLLYSFLQ-----IEELRCAACETMTEIVNKKMKPLEKLNLLN-ILNLNLFFSKSQEQSTDPNFDEHVAKLIN 302 (980)
T ss_dssp CHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcC-----ChHHHHHHHHHHHHHHHcCCChhhHHHHHH-HHhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 5556788887776 578999999999998865432 33344443 1111122222222 356666555555443
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.26 E-value=6.2 Score=29.89 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..+.+-|.++ ++.++..|+.+|..+.+..+.....++.. ..++..|..++...++.||+++..+++..+.
T Consensus 44 ~rai~Krl~~~---n~~~ql~AL~LLe~~vkNcG~~f~~evas--~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHK---DPHVAMQALTLLGACVSNCGKIFHLEVCS--RDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHSCHHHHHHHSS--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---ChHHHHHHHHHHHHHHHhcCHHHHHHHhh--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56666677776 78889999998888877665555556654 5678888888888899999999998877654
No 126
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.77 E-value=47 Score=33.75 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=115.5
Q ss_pred cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC------Cchhhhhh
Q 021242 58 YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD------SYRPIIGA 131 (315)
Q Consensus 58 ~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~------~~~~~i~~ 131 (315)
.+++...|..|-..|..+. ..++++..+..+|.+ +.+++++..|+.+|.+..... +.+..+.+
T Consensus 26 ~~p~~~~r~~Ae~~L~~~~--------~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 26 YQGSGVQQKQAQEILTKFQ--------DNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHCCHHHHHHHHHHHHHHH--------HSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHH--------hCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3455666777777775542 345677778888865 257889999999999876422 12333332
Q ss_pred ccccHHHHHHHhhccC---CChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 132 KRDIIHSLIEIIKTRN---SPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~~---~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.++..+...-..+. .++.++...+.++..++.. |+.= .+.++.++..+. ++...++.++.+|..|+
T Consensus 95 --~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~--~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 95 --FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS--SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp --HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc--cChHHHHHHHHHHHHHH
Confidence 22333332221000 0245566666777776652 3110 245667777774 34445677788887776
Q ss_pred cC-h--------hhH-----HHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHH
Q 021242 207 GC-E--------ESV-----DEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVAD 270 (315)
Q Consensus 207 ~~-~--------~~~-----~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~ 270 (315)
.. . ..| ..+.+.- .+..+...+... .+..++..++.++......-.. ..+.. ...++
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~--~~~~~~~~aL~~l~~~l~wi~~---~~~~~--~~ll~ 238 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG--SSSSLIVATLESLLRYLHWIPY---RYIYE--TNILE 238 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTSCT---HHHHS--SSHHH
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhCCH---HHHhh--hhHHH
Confidence 31 0 011 2232210 123334445443 2567888888888776543221 23443 55666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 271 GIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 271 ~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.+...+. .++.++..|..+|..+-..
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 6552222 2677787787777666543
No 127
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.73 E-value=4.1 Score=30.93 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=56.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la 76 (315)
+..+..+...|++++|.++..|+..|-.+.++.. .-...+.....+..|+.+++..++.+++..+..+..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999988887642 23456666777888888887788899999999885544
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=78.65 E-value=1.4 Score=37.08 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=13.9
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 021242 10 SLVTKLGSVSEQTRAEALAE 29 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~ 29 (315)
.+..+++++++.+|..++..
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHccCcCHHHHHHHHHH
Confidence 34556677788888888754
No 129
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=78.43 E-value=51 Score=34.20 Aligned_cols=222 Identities=11% Similarity=0.057 Sum_probs=116.9
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH--cCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 8 VRSLVTKLGSV--SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL--YSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 8 i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..+++.+-++ +++.|.+|-..|..+.+. ++ +...+...| .+.++.+|..|+.+|.+.....=..+
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44444443343 677888888888887543 22 344444433 34578899999999987653310000
Q ss_pred --hhhcCchHHHHHHHhcCCC---CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 84 --MSTRGLLDAISHVLRHHST---STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 84 --i~~~~~i~~L~~lL~~~~~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
-.....-..++.++.+... .....++...+.++..++..+-- ... ..+++.|+.++. . ++.....++.
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~W---p~ll~~L~~~~~--~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHW---PDMLIELDTLSK--Q-GETQTELVMF 155 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTC---TTHHHHHHHHHH--T-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHHhc--C-CHHHHHHHHH
Confidence 0011122334455432100 02456777788888888753211 112 356899999887 3 4556677888
Q ss_pred HHHHhccC---CC----cHHH----HHhhCCcHHHH----HHHhcC------------------CCcchHHHHHHHHHHH
Q 021242 159 ALFGIALY---PL----NRYQ----VIALGGVQPLF----SLVVNG------------------GRAGIVEDASAVIAQI 205 (315)
Q Consensus 159 aL~~Ls~~---~~----~~~~----i~~~g~v~~L~----~lL~~~------------------~~~~~~~~a~~~L~~L 205 (315)
+|..|+.+ .+ .|.. .+... ++.++ .++.+. ++..+...++.++.+.
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 88887642 11 1111 11211 33333 333210 0112344455555544
Q ss_pred hcChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 206 AGCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 206 ~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
..+-.. ..+.+.. .++.+..++. ++.++..|+.+|..+....
T Consensus 235 l~Wi~~-~~i~~~~~~ll~~l~~~l~-----~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 235 IDWVSM-SHITAENCKLLEILCLLLN-----EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTSCH-HHHHTTTSHHHHHHHHGGG-----CTTTHHHHHHHHHHHHTCC
T ss_pred HhccCH-HHHHhccchHHHHHHHHcC-----CHHHHHHHHHHHHHHHhCC
Confidence 333211 2233332 3555554444 5678899999999998644
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=77.37 E-value=10 Score=29.53 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
+..+.+-|+++ ++.++..|+.+|-.+.+..+.....++.. ..++..|+.++.. .++.||+++..+++.-..
T Consensus 54 ~ral~krl~~~---n~~vql~AL~LLd~~vkNcG~~Fh~evas--~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHK---VPHVALQALTLLGACVANCGKIFHLEVCS--RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHTCHHHHHHHTS--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHHHHHHHhh--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45666677776 78899999999988888666555566654 6788888888876 578999999998877765
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=76.71 E-value=31 Score=35.29 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=84.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-------CCHHHHHHHHHHHHhcCcccch
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-------SSHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~la~~~~~ 81 (315)
..+.+.+...+.+.+..++.+|.|+... ..++.|.+++.. ....++..|+++|.+++...++
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~ 511 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR 511 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH
Confidence 3444555667778888888888888643 247777777742 1346888999999888744322
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
. .-+.++++..+. ..++++|..|...|.. ..++ . ..+..+...+.. +.+.++.......|.
T Consensus 512 ~------v~~il~~i~~n~--~e~~EvRiaA~~~Lm~--t~P~-~-------~~l~~ia~~l~~-E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 512 K------VQEIVLPIFLNV--AIKSELRIRSCIVFFE--SKPS-V-------ALVSMVAVRLRR-EPNLQVASFVYSQMR 572 (1056)
T ss_dssp H------HHHHHHHHHHCT--TSCHHHHHHHHHHHHH--TCCC-H-------HHHHHHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred H------HHHHHHHHhcCC--CCChHHHHHHHHHHHH--HCcC-H-------HHHHHHHHHHhh-CchHHHHHHHHHHHH
Confidence 2 245567777542 2678988877766654 2221 1 225566666664 357788888888888
Q ss_pred HhccCCC
Q 021242 162 GIALYPL 168 (315)
Q Consensus 162 ~Ls~~~~ 168 (315)
+++.+..
T Consensus 573 sla~s~~ 579 (1056)
T 1lsh_A 573 SLSRSSN 579 (1056)
T ss_dssp HHTTCCS
T ss_pred HHHhcCC
Confidence 8887543
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=76.19 E-value=8.8 Score=29.40 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
-+..+..+...|++++|.++..|+..|-.+.++.. .-...+....++..|+++++. .++.+++..+..+..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999987643 235667778888999999963 56789999999885543
No 133
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=74.00 E-value=79 Score=31.99 Aligned_cols=201 Identities=12% Similarity=0.073 Sum_probs=108.3
Q ss_pred hhHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCchh----hHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Q 021242 6 RTVRSLVTKLGSV---SEQTRAEALAELRLLSKHDAEI----RPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 6 ~~i~~Lv~~L~~~---~~~~~~~a~~~L~~l~~~~~~~----~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~ 77 (315)
.+.......|..+ ++++|.-|+..|.+..+.=+.. ...-.+...+..+...-. ...+-++.+...+|..++.
T Consensus 40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 3445566677554 6899999999998776521122 222222333333333100 1234577777777766654
Q ss_pred cc-chhhhhhcCchHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhhc--CCC--c------------hhhhhhc--cccHH
Q 021242 78 TS-RDSLMSTRGLLDAISHVLRHHSTSTSS-AAVQSSAATLHSLLV--VDS--Y------------RPIIGAK--RDIIH 137 (315)
Q Consensus 78 ~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~-~~~~~a~~~L~~Ls~--~~~--~------------~~~i~~~--~g~i~ 137 (315)
.. +..+ ++.++.++.++.+ ++. .......++|..+.. .+. . +..+.+. ..+++
T Consensus 120 ~~~p~~W---p~~i~~l~~~~~~----~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~ 192 (980)
T 3ibv_A 120 QLYPSNW---NDFFASLQGVIAA----SSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVS 192 (980)
T ss_dssp HHTTTTC---TTHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhCcccC---chHHHHHHHHhcC----CChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHH
Confidence 43 1112 3467777777764 222 233344555554432 110 0 2233321 01123
Q ss_pred HHHHHhhcc--CCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc---ChhhH
Q 021242 138 SLIEIIKTR--NSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG---CEESV 212 (315)
Q Consensus 138 ~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~---~~~~~ 212 (315)
....+|..+ ..++.+...++.+|......-+ -..++....++.+..+|. ++.+++.|+.+|..+.. .++.+
T Consensus 193 ~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k~~~~~~k 268 (980)
T 3ibv_A 193 FVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNKKMKPLEK 268 (980)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHcCCChhhH
Confidence 333444321 2467788889999887776433 334556677888888874 36788889999988854 34444
Q ss_pred HHHHh
Q 021242 213 DEFKK 217 (315)
Q Consensus 213 ~~i~~ 217 (315)
..+++
T Consensus 269 ~~li~ 273 (980)
T 3ibv_A 269 LNLLN 273 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 134
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.18 E-value=22 Score=36.13 Aligned_cols=138 Identities=10% Similarity=-0.035 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC---CCH--HHHHHHHHHHHhcCccc--chhhhhhcCch
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS---SSH--AFQENAAATLLNLSITS--RDSLMSTRGLL 90 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~--~~~~~a~~~L~~la~~~--~~~~i~~~~~i 90 (315)
.++..+..|+.++..++..-......-.-..+++.|+.+... .++ -++..+++++..++.-- ....+ ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence 577899999999999975422211100011133333333221 123 34445778888776431 12221 2356
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhh---------hccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIG---------AKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~---------~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
+.++..+.+ +++.++..|+.++.+++... +..+. ....++..+..++.. -+.+-......++.
T Consensus 543 ~~ll~~l~~----~~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~--~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 543 LKLFEFMHE----THEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTAD--LQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHTTS----SCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHhcC----CCHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 667777765 57899999999999999632 22221 112233444455552 24444455556666
Q ss_pred Hhcc
Q 021242 162 GIAL 165 (315)
Q Consensus 162 ~Ls~ 165 (315)
.+..
T Consensus 615 ~ii~ 618 (1049)
T 3m1i_C 615 IIIS 618 (1049)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.59 E-value=16 Score=27.87 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh------hCCHHHHHHHHHHHHHH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ------NGSAKGKTKAVALLKIL 294 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~------~~~~~~k~~A~~~L~~l 294 (315)
+..+.+-++++ ++.++..|+.+|-.+.+..+.....++.. ..++..|+.++. ..++.||++...+++.-
T Consensus 50 ~ral~krl~~~---n~~v~l~AL~LLe~cvkNCG~~fh~eias--~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 50 TRLLAHKIQSP---QEWEAIQALTVLETCMKSCGKRFHDEVGK--FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHCCHHHHHHHTS--HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHhcCHHHHHHHhh--HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 56667777765 88999999999998888666566567765 678888988886 35789999999988877
Q ss_pred hh
Q 021242 295 VD 296 (315)
Q Consensus 295 ~~ 296 (315)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 136
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=69.45 E-value=1.1e+02 Score=31.50 Aligned_cols=217 Identities=10% Similarity=0.088 Sum_probs=121.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-----
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS----- 124 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~----- 124 (315)
++.++.-+.+++++.+..|-..|..+- ..++++..+..+|.+ +.+++++.-|+.+|.+......
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q--------~sp~aw~~~~~iL~~---s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLK--------EHPDAWTRVDTILEF---SQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSS--------CCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH--------cCchHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 444555555566777777877776653 245566666666654 2578999999999998764322
Q ss_pred -chhhhhhccccHHHHHHHhhcc---CCChHHHHHHHHHHHHhcc--CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHH
Q 021242 125 -YRPIIGAKRDIIHSLIEIIKTR---NSPLRSVKDALKALFGIAL--YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDA 198 (315)
Q Consensus 125 -~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a 198 (315)
.+..+.+ .++..+...-..+ ..++.++...+.++..+.. .|+. =.+.++-++.++.. +...++..
T Consensus 99 e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~--~~~~~~~~ 169 (1073)
T 3gjx_A 99 NQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT--SESLCQNN 169 (1073)
T ss_dssp HHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH--CHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC--CHHHHHHH
Confidence 2333332 2344444432211 1234555566666666664 2221 02345555666542 33456667
Q ss_pred HHHHHHHhcC--h------------hhHHHHHhcCCHHHHHH----HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHH
Q 021242 199 SAVIAQIAGC--E------------ESVDEFKKCCGIGVLVD----LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEE 260 (315)
Q Consensus 199 ~~~L~~L~~~--~------------~~~~~i~~~~~i~~Lv~----ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 260 (315)
+.+|..|+.. . ..++.+.+. ++.++. .+... .++.+...+..+|......-.- ..
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~--~~~~lv~~~L~~L~~~~sWI~i---~~ 242 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENS--QNAPLVHATLETLLRFLNWIPL---GY 242 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTSCT---HH
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHhcCH---HH
Confidence 7777777532 0 112233322 344443 44432 3566666777888877654321 35
Q ss_pred HHHHccCcHHHHH-HHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 261 VKEMAMQVADGIA-DVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 261 i~~~~~g~~~~L~-~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++. .+.++.|+ .++ .++.++..|...|..+-.-
T Consensus 243 i~~--~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 243 IFE--TKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHS--SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred hcc--chHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 665 67777664 333 5789999999988887554
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.45 E-value=14 Score=28.92 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh------CCHHHHHHHHHHHHHH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN------GSAKGKTKAVALLKIL 294 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~------~~~~~k~~A~~~L~~l 294 (315)
+..|.+-|+++ ++.++..|+.+|-.+.+..+.....++.. ..++..|+.++.. .++.||+++..+++.-
T Consensus 52 ~ral~krl~~~---n~~vql~AL~LLd~~vkNCG~~Fh~evas--~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 52 VRLLAHKIQSP---QEWEALQALTVLEACMKNCGRRFHNEVGK--FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHSHHHHHHHHTS--HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHcCHHHHHHHhh--HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 56677777776 88999999999998888655555566665 6788889988862 3689999999988877
Q ss_pred hh
Q 021242 295 VD 296 (315)
Q Consensus 295 ~~ 296 (315)
..
T Consensus 127 ~~ 128 (171)
T 1juq_A 127 TM 128 (171)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.60 E-value=14 Score=28.25 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh------CCHHHHHHHHHHHHHH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN------GSAKGKTKAVALLKIL 294 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~------~~~~~k~~A~~~L~~l 294 (315)
+..+.+-|+++ ++.++..|+.+|-.+.+..+.....++.. ..++..|+.++.. .++.||+++..+++.-
T Consensus 40 ~rai~krl~~~---n~~vql~AL~LLe~~vkNCG~~fh~evas--~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 40 PWLLAHKIQSP---QEKEALYALTVLEMCMNHCGEKFHSEVAK--FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHSCHHHHHHHTS--HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHcCHHHHHHHhh--HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 56677777776 89999999999999888766566567765 6788888888763 3789999999988777
Q ss_pred hh
Q 021242 295 VD 296 (315)
Q Consensus 295 ~~ 296 (315)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.37 E-value=11 Score=30.93 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLS 76 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la 76 (315)
.+..+..|...|+++++.++..|+..|-.+.++-. .-...|.....+..|+.+++. .++.+++.++..+...+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999987632 235666677778888888865 46789999999885544
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.47 E-value=13 Score=30.28 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=56.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la 76 (315)
+..+..|...|+++++.++..|+..|-.+.+.- +.-...+.....+..|+.++++ .++.+++.++..+..-+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999998774 3345677777788888888864 45788888888884443
No 141
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=64.10 E-value=63 Score=27.00 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=60.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHH--------HhcCccc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATL--------LNLSITS 79 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L--------~~la~~~ 79 (315)
++.++++-..++.++|.-.+..|...++..++ .-...++.|..++++.++.+...++.+. .-++.++
T Consensus 55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-----l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 55 LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-----LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555554566778888888888887755443 2234477888888888888777766643 2233332
Q ss_pred c-----hhhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 021242 80 R-----DSLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119 (315)
Q Consensus 80 ~-----~~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~L 119 (315)
. .... .-...-..++.++.+ .+..++..+...+-.+
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s----~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDN----ENDGIRTNAIKFLEGV 171 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGS----SCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHcc----CCcchHHHHHHHHHHH
Confidence 2 1111 111223344555565 5677777777666554
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.06 E-value=21 Score=29.28 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
+..|.+-|+++ ++.++..|+.+|..+.+..+.....++.. ..++..|..++.. .++.||+++..+++..+.
T Consensus 47 ~ral~krl~~~---n~~v~l~aL~LLe~~vkNcG~~f~~eias--~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDK---NPHVALYALEVMESVVKNCGQTVHDEVAN--KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHCHHHHHHHSS--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHhcchHHHHhhcc--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 56666777765 88899999999888887665555566654 5677788888776 578999999998887764
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=58.90 E-value=26 Score=26.87 Aligned_cols=72 Identities=8% Similarity=0.129 Sum_probs=54.2
Q ss_pred hhhHHHHHHHhC-CCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHH-HHHHHcC---CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLG-SVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPY-LAEILYS---SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~~la 76 (315)
+..+..+...|+ ++++.++..|+..|-.+.++. +.-...+.....+.. |++++.. ....+++.++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 456777888887 478999999999999998774 445566777788887 7888843 23578888888884443
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.12 E-value=29 Score=28.18 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
+..+.+-|+++ ++.++..|+.+|..+....+.....++.. ...+..|..++.+ .++.||+++..+++.-..
T Consensus 44 ~r~l~krl~~~---n~~~~l~aL~Lle~~vkNcG~~f~~eva~--~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSP---NPHSSCYSLLVLESIVKNCGAPVHEEVFT--KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHSHHHHHHHHSS--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHhccCHHHHHHHHh--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45566667765 88999999999998887655445566654 5678888888876 478999999988877764
No 145
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=56.03 E-value=85 Score=25.95 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=38.4
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 124 (315)
.++.+...+.++++.+|+.|+..+..-+... ....++..+-.++.-+.. .++.-++...++.|+.++-.++
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~---D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKE---DVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTT---CSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHhhhCH
Confidence 4666777777777777777777664422211 111111112222222332 2556677788888888886443
No 146
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=54.61 E-value=1.2e+02 Score=27.08 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=63.6
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhc--------Cc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNL--------SI 77 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l--------a~ 77 (315)
..++.++++-...+.++|.-.+..|...+..+.+.- .-+++.|..+|.+.++.+...++.+..++ +.
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777888999999999988876544431 34477888888888888777666544332 11
Q ss_pred ccc-----hh-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 021242 78 TSR-----DS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119 (315)
Q Consensus 78 ~~~-----~~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~L 119 (315)
++. .. +-.-...-..++.++.+ ++.-++..+...+-.+
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds----~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDS----DNDGIRTHAIKFVEGL 181 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGC----SSHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhcc----CCcchHHHHHHHHHHH
Confidence 111 11 11111123344555554 5677777777666554
No 147
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=47.44 E-value=21 Score=29.91 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--------CCHHHHHHHHHHHHhcCcccch-hhhhh
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--------SSHAFQENAAATLLNLSITSRD-SLMST 86 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~la~~~~~-~~i~~ 86 (315)
.++++..++-+++.++|+-.+..-.+..+......+.+++.+.+ .+..++-.++..++|++....+ +. +
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--~ 177 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--D 177 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--C
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--h
Confidence 35578899999999999987643256666544445555665532 1345888889999999865321 11 1
Q ss_pred cCchHHHHHHHhcC--CC---CCCHHHHHHHHHHHHHhhcCCC
Q 021242 87 RGLLDAISHVLRHH--ST---STSSAAVQSSAATLHSLLVVDS 124 (315)
Q Consensus 87 ~~~i~~L~~lL~~~--~~---~~~~~~~~~a~~~L~~Ls~~~~ 124 (315)
......+++.+..- .. ..+.|....+.-+|.+|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 22334455555410 00 0256777788888888886443
No 148
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=45.88 E-value=1.3e+02 Score=24.91 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC-chHHHH
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAE-ILYSSSHAFQENAAATLLNLSITSRDSLMSTRG-LLDAIS 94 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~-~i~~L~ 94 (315)
+...++|.-|+..|..+ ... ...++.+.+ +-...+=.+++.+..++..++.. ..+. .++.+.
T Consensus 82 ~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~------~~pe~~l~~~~ 145 (240)
T 3l9t_A 82 SDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK------IEYKKALPIID 145 (240)
T ss_dssp CSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH------HCTTTTHHHHH
T ss_pred CcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh------cCHHHHHHHHH
Confidence 33446666666655544 111 112333333 22223346777777777666531 1111 466777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhcc-ccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKR-DIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQ 172 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~ 172 (315)
...++ ++..++..|+..++.-+..+ .+.... -+++.|-.+.. +.+.-+++...+.|..++. +|+-...
T Consensus 146 ~W~~d----~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~--D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 146 EWLKS----SNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKE--DVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HHHHC----SSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcC----CCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 88887 78888887776655423211 111111 12233333333 3466788888999999998 4555455
Q ss_pred HHh
Q 021242 173 VIA 175 (315)
Q Consensus 173 i~~ 175 (315)
+++
T Consensus 216 ~~~ 218 (240)
T 3l9t_A 216 ELK 218 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=45.85 E-value=1.3e+02 Score=26.86 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHHhcc-CchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHH
Q 021242 18 VSEQTRAEALAELRLLSKH-DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHV 96 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~l 96 (315)
++ +.+...+..+..+.-+ ++. .=..+++.++.+-.+.+.++|.-.+.+|...+..+ ..+ -...++.|..+
T Consensus 38 ~~-~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el--~~~~l~~L~~L 108 (386)
T 3o2t_A 38 TN-DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IEL--LLKLIANLNML 108 (386)
T ss_dssp CS-THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGG--HHHHHHHHHHH
T ss_pred Ch-HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 44 5788888888887543 332 23678999999998889999999999996665322 222 23467888888
Q ss_pred HhcCCCCCCHHHHHHHH---HHHHHhh-----cCCCc----hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 97 LRHHSTSTSSAAVQSSA---ATLHSLL-----VVDSY----RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 97 L~~~~~~~~~~~~~~a~---~~L~~Ls-----~~~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
|.+ .++.+...+. ..|+.++ ..+.. .........+-..++.++. +++..++..|++.+-.+
T Consensus 109 L~d----~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~d--s~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 109 LRD----ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLD--SDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HTC----SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHH
T ss_pred HcC----CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHH
Confidence 886 5666654333 3333332 22221 1222222344456666666 56788888888766654
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.23 E-value=71 Score=24.37 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=51.5
Q ss_pred HHHHHHHhhc-CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHH-HHHHHhh---CCHHHHHHHHHHHHHHh
Q 021242 221 IGVLVDLLDL-GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADG-IADVAQN---GSAKGKTKAVALLKILV 295 (315)
Q Consensus 221 i~~Lv~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~-L~~ll~~---~~~~~k~~A~~~L~~l~ 295 (315)
+..+.+-|+. + ++.++..|+.+|-.+.+..+.....++.. ...+.. |+.++.. ....||+++..+++.-.
T Consensus 55 ~ral~krl~~~~---n~~v~l~AL~LLd~~vkNcG~~fh~eva~--~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNK---NFHEVMLALTVLETCVKNCGHRFHVLVAS--QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHSCHHHHHHHTS--HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhCHHHHHHHhh--HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4566667763 3 77888899999988888666566566655 678887 7787742 24689999998887766
Q ss_pred h
Q 021242 296 D 296 (315)
Q Consensus 296 ~ 296 (315)
.
T Consensus 130 ~ 130 (157)
T 1elk_A 130 D 130 (157)
T ss_dssp H
T ss_pred H
Confidence 5
No 151
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.23 E-value=1.5e+02 Score=25.54 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=94.7
Q ss_pred HHHHHHHhhcc--CC--ChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhc-CCCcchHHHHHHHHHHHhc-Ch
Q 021242 136 IHSLIEIIKTR--NS--PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVN-GGRAGIVEDASAVIAQIAG-CE 209 (315)
Q Consensus 136 i~~Lv~ll~~~--~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~-~~~~~~~~~a~~~L~~L~~-~~ 209 (315)
+.....++++. .. +......|+..|..+|.+-+--.+|.+.. ...|-.++.. .....+++.+.+++...-+ +|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 56677777731 01 33456789999999998776666777633 3333333321 2334678889998888766 56
Q ss_pred hhHHHHHhcC--CHHHHHHHhhc----CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC--CH
Q 021242 210 ESVDEFKKCC--GIGVLVDLLDL----GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG--SA 281 (315)
Q Consensus 210 ~~~~~i~~~~--~i~~Lv~ll~~----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~--~~ 281 (315)
...+.+.+.. .+..+..-|.. ++.........-+++|..|..... . . . ..++..|..+.... ++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~----F-~--~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-D----L-P--IYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-T----C-----CCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-h----h-h--hccHHHHHHHHccCCCCH
Confidence 6666665543 25554444332 212345667777899999987532 1 1 1 44667777777777 99
Q ss_pred HHHHHHHHHHHHHh
Q 021242 282 KGKTKAVALLKILV 295 (315)
Q Consensus 282 ~~k~~A~~~L~~l~ 295 (315)
.+|.++..++..+-
T Consensus 175 ~~k~Kvl~li~d~f 188 (315)
T 3qml_C 175 QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999766554
No 152
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.19 E-value=1.5e+02 Score=25.54 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=69.3
Q ss_pred HhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcC-------CCHHHHHHHHHHHHhcCcccchhhh
Q 021242 14 KLGSVSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYS-------SSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 14 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
.....++.+++.|+..|......+|.....|.+ ...+..+..-|.. ....++..-+.+|..|..++. -+
T Consensus 78 ~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~--~F 155 (315)
T 3qml_C 78 LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE--DL 155 (315)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST--TC
T ss_pred hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH--hh
Confidence 335567789999999999999999988887776 5666666655532 233466777788888877652 11
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
...++..|..++... ...++++..++..+..+=
T Consensus 156 -~~~~m~~L~~ly~~~--~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 156 -PIYSTVVLQNVYERN--NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp ---CCHHHHHHHHHHT--TTCHHHHHHHHHHHHHHH
T ss_pred -hhccHHHHHHHHccC--CCCHHHHHHHHHHHHHHc
Confidence 244678888888751 127788887777766543
No 153
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=43.40 E-value=2e+02 Score=26.50 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=66.3
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH-HHHHHHHHHHHhc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR-SVKDALKALFGIA 164 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~-~~~~a~~aL~~Ls 164 (315)
+--.++.++.-|.+ +.+.+...||.+|. ....+..+.. .+++..|++++-+.+.+.. +.-..=.++..|+
T Consensus 114 evysve~i~~aL~S----~~~~l~~~~ckVI~----~s~pk~lfa~-t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls 184 (500)
T 3vld_A 114 EVYSAEDLVKALRS----EIDPLKVAACRVIE----NSQPKGLFAT-SNIIDILLDILFDEKVENDKLITAIEKALERLS 184 (500)
T ss_dssp HHSCHHHHHHHHTS----SCHHHHHHHHHHHH----TCSSGGGGTT-SSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHhc----CChHHHHHHHHHhc----ccCchhHhcc-ChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 33468889999997 57788888888887 4555777776 4889999998875322333 5444556666766
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
++.=.+..+.+ ...|.+.. +++..+.......+..+.-+
T Consensus 185 sdeLirrril~-nnl~lL~~-vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 185 TDELIRRRLFD-NNLPYLVS-VKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp TSHHHHHHHHT-TTHHHHHH-HHHHCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HhHHHHHH-HhcCCCceeHHHHHHHHHHH
Confidence 54435666664 34444333 33223333334445555544
No 154
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=36.93 E-value=2.2e+02 Score=26.22 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=58.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC--HH-HHHHHHHHHHhcCccc--ch
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS--HA-FQENAAATLLNLSITS--RD 81 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~-~~~~a~~~L~~la~~~--~~ 81 (315)
.++.++..|.++++.....|+..|. ....+..++..+++..|++++-..+ .. +....=.++..|+.+. ++
T Consensus 117 sve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirr 191 (500)
T 3vld_A 117 SAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRR 191 (500)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHH
Confidence 4678899999998888888888887 3467889999999999999996643 23 6555555666777665 34
Q ss_pred hhhhhcCchHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVL 97 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL 97 (315)
++. + +..|.+..+=
T Consensus 192 ril-~-nnl~lL~~vK 205 (500)
T 3vld_A 192 RLF-D-NNLPYLVSVK 205 (500)
T ss_dssp HHH-T-TTHHHHHHHH
T ss_pred HHH-H-HhHHHHHHHh
Confidence 443 1 2444444433
No 155
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=28.25 E-value=1.2e+02 Score=27.34 Aligned_cols=103 Identities=10% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcCC--------CHHHHHHHHHHHHhcCcccch-hhhh
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYSS--------SHAFQENAAATLLNLSITSRD-SLMS 85 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~la~~~~~-~~i~ 85 (315)
.+.++..++-+++.++|+-.+ +. .+..+......+.+++.+.+. +..++.+++.+++|+|....+ +.
T Consensus 272 ~~~~~an~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-- 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--
T ss_pred CCCChhHHHHHHHHHHHhcCC-cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 355789999999999999866 44 344443333456667666321 245788888899999875321 10
Q ss_pred hcCchHHHHHHHhc--CCC---CCCHHHHHHHHHHHHHhhc
Q 021242 86 TRGLLDAISHVLRH--HST---STSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 86 ~~~~i~~L~~lL~~--~~~---~~~~~~~~~a~~~L~~Ls~ 121 (315)
.......+..++.. +.. ..+.|....++-+|.+|..
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11233455555541 000 1367888888888888885
No 156
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=27.35 E-value=2e+02 Score=23.84 Aligned_cols=149 Identities=11% Similarity=0.137 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchh-hHHHHhCCCHHHHHHHHcCCCHHHHHHH---HHHHHhcCccc
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEI-RPMISEAGSIPYLAEILYSSSHAFQENA---AATLLNLSITS 79 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a---~~~L~~la~~~ 79 (315)
|..++..|.+. .-.++.+|++|+..|.......-.+ ...+. .-|+.|-......++++-... +..|.|....+
T Consensus 89 K~~df~~l~k~-~v~d~~vQrkAi~EL~~VM~~sG~y~q~~~~--keIe~LK~yfNasn~Dv~dggplFl~ilknwkee~ 165 (258)
T 1fyh_A 89 KRDDFEKLTNY-SVTDLNVQRKAIDELIQVMAELGANVSGEFV--KEAENLKKYFNAGHSDVADNGTLFLGILKNWKEES 165 (258)
T ss_dssp HHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHHC-------CCCCSSHHHHHHCCSHH
T ss_pred HHHHHHHHHcc-CCCcHHHHHHHHHHHHHHHHHcCcccchhHH--HHHHHHHHHhccCCccccCCCcchHHhhhhhhhcc
Confidence 33444444332 5568899999998888775443332 22333 237777777776665543322 34455554333
Q ss_pred chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 80 RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 80 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+++++ ....++.=.+++..-. +++.++.. ..+|..=. ....+-.+..-+.-+..+.+-+-+++.++..|++-
T Consensus 166 dkkIi-~SQIvs~Y~KlFe~Lk--dn~~iq~s-m~~IkedL----~~~~fn~s~~Kl~df~~L~ki~vnD~~IQrKAi~E 237 (258)
T 1fyh_A 166 DRKIM-QSQIVSFYFKLFKNFK--DDQSIQKS-VETIKEDM----NVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHE 237 (258)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTT--TCTTTHHH-HHHHHHHH----HHHHTTSCHHHHHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred chhhH-HHHHHHHHHHHHHhhc--cCHHHHHH-HHHHHHHH----HHHhccCcHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44444 5556776666665211 12222322 22222111 11111111111333344444334577788777765
Q ss_pred HHHh
Q 021242 160 LFGI 163 (315)
Q Consensus 160 L~~L 163 (315)
|...
T Consensus 238 L~~V 241 (258)
T 1fyh_A 238 LIQV 241 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 157
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=26.28 E-value=2.8e+02 Score=22.99 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHH
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVL 97 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL 97 (315)
++ +.+...+...+.++-+.+. .. =..+++.++.+..+.+.++|.-.+.++...+..+. .+ ....++.|..++
T Consensus 28 ~~-~~kl~~L~qa~el~~~~dp--~l--l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-~l--~~~~l~~L~~Ll 99 (257)
T 3gs3_A 28 SP-STKCELLAKVQETVLGSCA--EL--AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-EL--LPHVINVVSMLL 99 (257)
T ss_dssp CH-HHHHHHHHHHHHHHTTTTG--GG--HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GG--HHHHHHHHHHHT
T ss_pred Cc-HHHHHHHHHHHHHHHccCH--hH--HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHH
Confidence 44 7889999999997755321 11 14457777777777788899999999977663221 11 334678888888
Q ss_pred hcCCCCCCHHHHHHHH---HHHHHh-----hcCCCc----hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 98 RHHSTSTSSAAVQSSA---ATLHSL-----LVVDSY----RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~---~~L~~L-----s~~~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
++ +++.+.+.+. ..++.+ +..+.. .........+=..+++++. +++..++..|.+.+-.+
T Consensus 100 ~d----~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~--s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 100 RD----NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMID--NENDGIRTNAIKFLEGV 171 (257)
T ss_dssp TC----SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGG--SSCHHHHHHHHHHHHHH
T ss_pred cC----CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHc--cCCcchHHHHHHHHHHH
Confidence 86 5676655333 233332 222221 1222222233345556666 45677777777666553
No 158
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=22.36 E-value=1.8e+02 Score=25.66 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--------CCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--------SSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
.+.++..++-+++.++|+-.+..-.+..+......+.+++.+.+ .+..++.+++..++|+|....+.-. ..
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~-~~ 287 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-DL 287 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS-CT
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc-hH
Confidence 35578999999999999986632134444332224455555522 1345788888899999875321000 11
Q ss_pred CchHHHHHHHhc--CCC---CCCHHHHHHHHHHHHHhhcC
Q 021242 88 GLLDAISHVLRH--HST---STSSAAVQSSAATLHSLLVV 122 (315)
Q Consensus 88 ~~i~~L~~lL~~--~~~---~~~~~~~~~a~~~L~~Ls~~ 122 (315)
.....+...+.. +.. ..+.|....++-+|.+|...
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 233455555541 000 03678888888888888853
No 159
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.01 E-value=3e+02 Score=21.82 Aligned_cols=139 Identities=11% Similarity=0.077 Sum_probs=78.2
Q ss_pred cHHHHHHHhhc----cCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCC--CcchHHHHHHHHHHHhcC
Q 021242 135 IIHSLIEIIKT----RNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGG--RAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 135 ~i~~Lv~ll~~----~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~--~~~~~~~a~~~L~~L~~~ 208 (315)
++|.++..+.. ...+.......++....|..++...-.-.-.-.+|+++.++-... ...+++.|..+|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 46666665542 123566667778888888887765433333456888888886421 125888899999998752
Q ss_pred -hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHH
Q 021242 209 -EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKT 285 (315)
Q Consensus 209 -~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~ 285 (315)
...-..+ .......+.+.+.+. ..+.....-|+..|..+ +. +.++ .-++|.|-.+.+. ...++-.
T Consensus 121 ~~~~y~~L-~~RI~~tl~k~l~dp-~~~l~t~YGAi~GL~~l---G~-----~~vr--~~llP~l~~~~~~~~~~~~~~ 187 (196)
T 4atg_A 121 YSRSYKTL-APRVLKTLKGVWMDP-NRSEDSQYGALYCLSIL---SK-----NVVN--TVIREHAEEYKRTIGKKKVTN 187 (196)
T ss_dssp HTTTSTTH-HHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHH---CH-----HHHH--THHHHHHHHHHHHTCCHHHHH
T ss_pred hCccCchH-HHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHh---HH-----HHHH--HhhhcCHHHHHHHHHHHHHHH
Confidence 1110111 111235555555543 12444555555555554 43 2344 4566888776665 4444443
Done!