Query 021244
Match_columns 315
No_of_seqs 220 out of 847
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584 cAMP response element 99.4 1.3E-13 2.7E-18 131.2 6.7 64 241-307 284-347 (348)
2 KOG4343 bZIP transcription fac 99.2 2.1E-11 4.5E-16 123.7 8.2 55 241-295 274-328 (655)
3 smart00338 BRLZ basic region l 99.2 6.5E-11 1.4E-15 89.2 7.6 52 245-296 2-53 (65)
4 PF00170 bZIP_1: bZIP transcri 99.1 3.5E-10 7.5E-15 85.1 8.2 53 245-297 2-54 (64)
5 KOG4005 Transcription factor X 99.1 1.3E-10 2.9E-15 108.3 6.8 69 230-300 53-121 (292)
6 PF07716 bZIP_2: Basic region 99.0 1.3E-09 2.9E-14 79.7 7.8 50 246-296 3-52 (54)
7 KOG0709 CREB/ATF family transc 98.9 2.3E-09 4.9E-14 107.7 5.2 54 242-295 245-298 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 9.4E-07 2E-11 71.2 -2.4 52 244-295 26-77 (92)
9 KOG0837 Transcriptional activa 97.6 0.00017 3.7E-09 68.6 7.8 66 231-296 188-254 (279)
10 KOG3119 Basic region leucine z 97.0 0.0034 7.3E-08 59.9 8.7 58 240-297 186-243 (269)
11 KOG4571 Activating transcripti 96.8 0.004 8.6E-08 60.3 7.1 50 246-295 224-274 (294)
12 KOG3863 bZIP transcription fac 95.9 0.0077 1.7E-07 63.3 4.1 51 248-298 490-541 (604)
13 KOG4196 bZIP transcription fac 95.8 0.053 1.1E-06 47.2 8.0 50 244-293 49-98 (135)
14 KOG1414 Transcriptional activa 94.0 0.0072 1.6E-07 60.4 -2.3 64 233-296 270-334 (395)
15 KOG1414 Transcriptional activa 91.0 0.014 3.1E-07 58.3 -4.6 53 243-295 149-205 (395)
16 KOG3119 Basic region leucine z 87.3 3.8 8.3E-05 39.2 9.0 72 236-307 185-260 (269)
17 KOG4343 bZIP transcription fac 81.0 2.2 4.8E-05 45.0 4.7 75 240-314 277-367 (655)
18 PF01166 TSC22: TSC-22/dip/bun 80.3 3 6.5E-05 31.8 4.0 21 270-290 22-42 (59)
19 PF05812 Herpes_BLRF2: Herpesv 79.5 2.9 6.2E-05 36.0 4.1 27 267-293 1-27 (118)
20 PRK00888 ftsB cell division pr 77.7 6.1 0.00013 32.8 5.5 33 265-297 30-62 (105)
21 PHA03162 hypothetical protein; 77.3 1.6 3.5E-05 38.2 2.0 27 266-292 10-36 (135)
22 PHA03155 hypothetical protein; 75.7 3.6 7.8E-05 35.2 3.6 24 269-292 8-31 (115)
23 PF01166 TSC22: TSC-22/dip/bun 72.4 8.5 0.00018 29.4 4.5 29 270-298 15-43 (59)
24 PF04977 DivIC: Septum formati 71.8 12 0.00027 28.0 5.5 30 266-295 21-50 (80)
25 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.4 35 0.00076 29.0 8.1 48 247-294 83-130 (132)
26 KOG4797 Transcriptional regula 66.4 12 0.00025 32.1 4.7 22 269-290 74-95 (123)
27 PRK10884 SH3 domain-containing 64.8 47 0.001 30.8 8.8 28 268-295 124-151 (206)
28 PF12808 Mto2_bdg: Micro-tubul 63.9 21 0.00045 26.6 5.1 25 272-296 25-49 (52)
29 PF07558 Shugoshin_N: Shugoshi 63.9 7.2 0.00016 28.0 2.6 42 250-292 3-44 (46)
30 PF01486 K-box: K-box region; 61.4 31 0.00068 27.8 6.3 47 247-293 48-99 (100)
31 PF03980 Nnf1: Nnf1 ; InterPr 61.4 17 0.00037 29.7 4.7 31 266-296 77-107 (109)
32 KOG4797 Transcriptional regula 60.1 12 0.00027 32.0 3.7 32 269-300 67-98 (123)
33 cd07429 Cby_like Chibby, a nuc 59.0 18 0.00039 30.6 4.5 22 277-298 80-101 (108)
34 KOG4571 Activating transcripti 57.0 1.1E+02 0.0023 30.3 10.0 53 244-299 227-285 (294)
35 TIGR02209 ftsL_broad cell divi 55.8 57 0.0012 25.0 6.7 32 266-297 28-59 (85)
36 PF08172 CASP_C: CASP C termin 55.7 31 0.00067 32.9 6.1 58 241-299 80-137 (248)
37 PRK09413 IS2 repressor TnpA; R 53.7 26 0.00057 29.2 4.7 25 271-295 80-104 (121)
38 KOG1318 Helix loop helix trans 53.2 42 0.00091 34.5 6.9 53 244-296 238-317 (411)
39 PF04999 FtsL: Cell division p 53.0 62 0.0014 25.7 6.6 32 271-302 44-75 (97)
40 PF14645 Chibby: Chibby family 51.3 26 0.00057 29.8 4.3 25 274-298 76-100 (116)
41 smart00340 HALZ homeobox assoc 50.7 32 0.00069 24.8 4.0 27 274-300 10-36 (44)
42 PF10226 DUF2216: Uncharacteri 49.9 1.1E+02 0.0025 28.4 8.5 54 245-298 20-77 (195)
43 PRK13169 DNA replication intia 48.0 32 0.00069 29.2 4.3 29 267-295 27-55 (110)
44 PF06698 DUF1192: Protein of u 47.7 31 0.00068 26.2 3.8 23 271-293 23-45 (59)
45 KOG4005 Transcription factor X 47.3 1E+02 0.0023 29.9 8.1 52 241-295 66-123 (292)
46 KOG2829 E2F-like protein [Tran 46.7 49 0.0011 32.8 5.9 37 242-286 134-170 (326)
47 PF14077 WD40_alt: Alternative 46.3 17 0.00036 26.7 2.1 21 269-289 18-38 (48)
48 PF12709 Kinetocho_Slk19: Cent 44.9 50 0.0011 27.1 4.9 25 271-295 51-75 (87)
49 PF12709 Kinetocho_Slk19: Cent 44.5 61 0.0013 26.6 5.3 32 265-296 38-69 (87)
50 PF06156 DUF972: Protein of un 43.9 41 0.0009 28.2 4.4 25 269-293 29-53 (107)
51 PF06785 UPF0242: Uncharacteri 43.8 1E+02 0.0023 31.2 7.8 25 265-289 197-221 (401)
52 PF08172 CASP_C: CASP C termin 42.6 2.7E+02 0.0058 26.6 10.1 37 258-296 84-120 (248)
53 PF12999 PRKCSH-like: Glucosid 42.4 1.8E+02 0.0038 26.7 8.5 32 264-295 141-172 (176)
54 KOG0709 CREB/ATF family transc 41.7 82 0.0018 33.0 6.9 54 244-297 251-314 (472)
55 PF06156 DUF972: Protein of un 41.3 50 0.0011 27.7 4.5 30 269-298 22-51 (107)
56 PF02183 HALZ: Homeobox associ 40.8 72 0.0016 22.8 4.6 25 272-296 15-39 (45)
57 PF07047 OPA3: Optic atrophy 3 40.7 54 0.0012 28.2 4.8 38 247-290 96-133 (134)
58 TIGR02894 DNA_bind_RsfA transc 40.1 1.1E+02 0.0023 27.8 6.7 31 263-293 105-135 (161)
59 KOG1103 Predicted coiled-coil 39.7 73 0.0016 32.7 6.1 48 245-295 111-158 (561)
60 PF13863 DUF4200: Domain of un 39.4 2.1E+02 0.0046 23.4 9.1 49 247-295 59-107 (126)
61 PF14197 Cep57_CLD_2: Centroso 39.3 1.6E+02 0.0035 22.8 6.7 37 251-287 29-65 (69)
62 PF05377 FlaC_arch: Flagella a 38.7 60 0.0013 24.5 4.1 23 273-295 11-33 (55)
63 PF06005 DUF904: Protein of un 38.6 75 0.0016 24.9 4.8 23 271-293 27-49 (72)
64 PF13851 GAS: Growth-arrest sp 37.2 3E+02 0.0064 25.3 9.3 48 247-294 71-118 (201)
65 PF10473 CENP-F_leu_zip: Leuci 37.0 2.7E+02 0.0059 24.5 8.6 55 240-295 24-78 (140)
66 PRK13169 DNA replication intia 36.8 69 0.0015 27.2 4.6 30 269-298 22-51 (110)
67 PF08232 Striatin: Striatin fa 35.9 1.7E+02 0.0038 25.2 7.1 44 252-295 15-58 (134)
68 KOG1029 Endocytic adaptor prot 35.8 1.7E+02 0.0037 32.9 8.5 14 46-60 58-71 (1118)
69 PF06005 DUF904: Protein of un 35.7 98 0.0021 24.2 5.1 21 272-292 35-55 (72)
70 PF08781 DP: Transcription fac 35.5 1.5E+02 0.0033 26.3 6.8 29 263-291 16-47 (142)
71 KOG3335 Predicted coiled-coil 35.3 1.1E+02 0.0024 28.3 6.0 24 270-293 107-130 (181)
72 PF08563 P53_TAD: P53 transact 35.2 26 0.00056 22.6 1.4 19 88-106 4-22 (25)
73 smart00243 GAS2 Growth-Arrest- 34.8 19 0.00041 28.6 0.9 12 125-136 55-66 (73)
74 COG5509 Uncharacterized small 34.5 63 0.0014 25.0 3.6 24 270-293 26-49 (65)
75 KOG0977 Nuclear envelope prote 34.5 79 0.0017 33.7 5.6 22 276-297 56-77 (546)
76 PF06305 DUF1049: Protein of u 34.1 56 0.0012 24.0 3.4 11 277-287 56-66 (68)
77 PRK09413 IS2 repressor TnpA; R 34.0 75 0.0016 26.4 4.5 29 271-299 73-101 (121)
78 PRK13922 rod shape-determining 33.3 1.1E+02 0.0025 28.6 6.1 15 280-294 97-111 (276)
79 PF10669 Phage_Gp23: Protein g 33.0 1.9E+02 0.0042 24.5 6.6 50 245-298 52-101 (121)
80 PF05103 DivIVA: DivIVA protei 32.9 63 0.0014 26.5 3.9 27 269-295 25-51 (131)
81 TIGR02449 conserved hypothetic 32.1 85 0.0019 24.3 4.1 12 280-291 18-29 (65)
82 COG3879 Uncharacterized protei 32.0 2.3E+02 0.005 27.4 7.8 44 253-296 55-102 (247)
83 PF11559 ADIP: Afadin- and alp 31.6 2.9E+02 0.0063 23.6 7.9 48 248-295 45-92 (151)
84 PRK13729 conjugal transfer pil 31.1 1.9E+02 0.0041 30.5 7.6 24 270-293 98-121 (475)
85 cd08533 SAM_PNT-ETS-1,2 Steril 30.8 25 0.00054 27.5 1.0 16 123-138 39-54 (71)
86 cd08757 SAM_PNT_ESE Sterile al 29.9 28 0.0006 26.7 1.1 17 122-138 38-54 (68)
87 PF05377 FlaC_arch: Flagella a 29.7 1.1E+02 0.0024 23.1 4.2 26 271-296 2-27 (55)
88 PF10224 DUF2205: Predicted co 29.6 1.4E+02 0.0031 23.9 5.2 30 269-298 30-59 (80)
89 cd08531 SAM_PNT-ERG_FLI-1 Ster 29.3 29 0.00064 27.3 1.2 18 122-139 40-57 (75)
90 PF13747 DUF4164: Domain of un 29.1 3.1E+02 0.0067 22.1 7.4 49 245-293 8-56 (89)
91 KOG0288 WD40 repeat protein Ti 28.4 2.6E+02 0.0056 29.2 7.9 25 268-292 47-71 (459)
92 cd08203 SAM_PNT Sterile alpha 28.3 31 0.00067 26.2 1.1 17 122-138 36-52 (66)
93 KOG1962 B-cell receptor-associ 28.3 2.2E+02 0.0047 27.0 6.9 45 249-293 166-210 (216)
94 PRK15078 polysaccharide export 28.0 53 0.0011 33.0 3.0 63 81-143 119-208 (379)
95 TIGR03752 conj_TIGR03752 integ 27.9 87 0.0019 32.8 4.6 18 273-290 77-94 (472)
96 cd05030 calgranulins Calgranul 27.7 35 0.00076 26.8 1.4 29 95-136 49-77 (88)
97 PF07047 OPA3: Optic atrophy 3 27.5 1.5E+02 0.0033 25.4 5.4 25 271-295 107-131 (134)
98 cd04776 HTH_GnyR Helix-Turn-He 27.4 2.3E+02 0.005 23.6 6.3 35 269-303 80-114 (118)
99 PHA02675 ORF104 fusion protein 27.2 3.6E+02 0.0077 22.2 7.4 52 242-293 31-82 (90)
100 KOG2391 Vacuolar sorting prote 26.1 3.8E+02 0.0083 27.3 8.5 59 239-297 216-274 (365)
101 COG1792 MreC Cell shape-determ 26.1 1E+02 0.0023 29.8 4.5 26 270-295 84-109 (284)
102 PF13971 Mei4: Meiosis-specifi 25.7 1.2E+02 0.0025 31.0 4.9 30 279-313 62-91 (375)
103 cd08540 SAM_PNT-ERG Sterile al 25.7 37 0.00081 26.8 1.2 17 123-139 41-57 (75)
104 PF10205 KLRAQ: Predicted coil 25.5 4.1E+02 0.0089 22.4 8.5 27 270-296 41-67 (102)
105 PHA03161 hypothetical protein; 25.3 3.7E+02 0.0079 24.2 7.4 28 258-285 78-105 (150)
106 PRK00888 ftsB cell division pr 25.2 1.3E+02 0.0027 25.0 4.3 18 266-283 45-62 (105)
107 PF14257 DUF4349: Domain of un 24.9 3.2E+02 0.007 25.4 7.5 44 253-296 146-189 (262)
108 TIGR00219 mreC rod shape-deter 24.9 1.1E+02 0.0023 29.6 4.4 25 272-296 87-111 (283)
109 PF09726 Macoilin: Transmembra 24.2 2.6E+02 0.0057 30.6 7.6 6 274-279 550-555 (697)
110 KOG1029 Endocytic adaptor prot 23.9 2.5E+02 0.0054 31.8 7.2 9 60-68 50-58 (1118)
111 cd04405 RhoGAP_BRCC3-like RhoG 23.4 37 0.0008 32.4 0.9 15 94-108 1-15 (235)
112 COG5562 Phage envelope protein 23.1 41 0.00089 29.7 1.0 17 125-141 87-106 (137)
113 PRK06569 F0F1 ATP synthase sub 22.9 5.4E+02 0.012 23.0 8.1 33 244-276 37-69 (155)
114 cd08532 SAM_PNT-PDEF-like Ster 22.7 43 0.00093 26.5 1.0 51 88-138 4-59 (76)
115 PRK05759 F0F1 ATP synthase sub 22.6 4.8E+02 0.01 22.1 8.2 49 242-290 29-77 (156)
116 PF10482 CtIP_N: Tumour-suppre 22.5 3.4E+02 0.0075 23.5 6.4 28 265-292 92-119 (120)
117 PF11500 Cut12: Spindle pole b 22.4 5.7E+02 0.012 23.0 8.4 52 242-293 78-129 (152)
118 TIGR00219 mreC rod shape-deter 22.3 94 0.002 30.0 3.5 9 288-296 96-104 (283)
119 CHL00118 atpG ATP synthase CF0 22.3 5.1E+02 0.011 22.4 8.1 43 245-287 50-92 (156)
120 PF09766 FimP: Fms-interacting 22.2 3.6E+02 0.0079 26.8 7.6 44 250-293 110-153 (355)
121 cd07672 F-BAR_PSTPIP2 The F-BA 22.2 6.6E+02 0.014 23.6 9.2 63 244-306 154-224 (240)
122 PF05529 Bap31: B-cell recepto 22.0 4.7E+02 0.01 23.2 7.7 27 268-294 160-186 (192)
123 PF05300 DUF737: Protein of un 21.9 3.6E+02 0.0078 24.9 7.0 43 253-295 118-160 (187)
124 KOG0982 Centrosomal protein Nu 21.9 4.7E+02 0.01 27.5 8.4 22 118-142 68-89 (502)
125 cd08534 SAM_PNT-GABP-alpha Ste 21.7 77 0.0017 25.8 2.3 53 86-138 11-69 (89)
126 TIGR03027 pepcterm_export puta 21.7 31 0.00067 30.1 0.0 79 58-142 7-114 (165)
127 PF06673 L_lactis_ph-MCP: Lact 21.5 87 0.0019 29.9 3.0 23 271-293 20-42 (347)
128 PRK13454 F0F1 ATP synthase sub 21.2 5.8E+02 0.012 22.8 8.1 31 247-277 61-91 (181)
129 TIGR00993 3a0901s04IAP86 chlor 20.8 1.5E+02 0.0034 32.8 5.0 26 256-281 418-443 (763)
130 KOG1318 Helix loop helix trans 20.8 4.6E+02 0.01 27.2 8.1 31 246-276 227-257 (411)
131 PF13094 CENP-Q: CENP-Q, a CEN 20.8 4.8E+02 0.01 22.5 7.3 43 253-295 46-89 (160)
132 KOG1690 emp24/gp25L/p24 family 20.8 2.2E+02 0.0048 26.9 5.3 47 266-312 136-184 (215)
133 PF10883 DUF2681: Protein of u 20.7 2.5E+02 0.0054 23.0 5.1 15 278-292 32-46 (87)
134 KOG1691 emp24/gp25L/p24 family 20.4 1.1E+02 0.0025 28.8 3.4 26 269-294 134-159 (210)
135 PF11932 DUF3450: Protein of u 20.3 7E+02 0.015 23.2 8.7 37 253-289 61-97 (251)
136 KOG2483 Upstream transcription 20.2 1.8E+02 0.0039 27.7 4.8 29 265-293 101-136 (232)
137 PRK14471 F0F1 ATP synthase sub 20.0 5.7E+02 0.012 22.1 8.2 44 244-287 35-78 (164)
138 PRK13922 rod shape-determining 20.0 4.7E+02 0.01 24.5 7.6 16 271-286 78-93 (276)
No 1
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.44 E-value=1.3e-13 Score=131.22 Aligned_cols=64 Identities=34% Similarity=0.526 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 021244 241 MIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLILFMLFCIAVA 307 (315)
Q Consensus 241 ~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l~~~~~~~~~ 307 (315)
..|+...||+-|++||||+|++||+|||+|+++||++|+.||.+|+.|.+|+ +.|+..||++.-
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEEL---KtLKeLYc~k~~ 347 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEEL---KTLKELYCHKSK 347 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHH---HHHHHHhhcccC
Confidence 3567889999999999999999999999999999999999999999999888 477788998753
No 2
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.22 E-value=2.1e-11 Score=123.67 Aligned_cols=55 Identities=44% Similarity=0.597 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 241 MIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 241 ~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.+|.++.||+.|||||||||+.||+|||+|+..||.++..|..||+.|++|+.-|
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatL 328 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATL 328 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4678899999999999999999999999999999999999999999988887644
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.19 E-value=6.5e-11 Score=89.17 Aligned_cols=52 Identities=50% Similarity=0.646 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|..+++.+.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999988664
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.11 E-value=3.5e-10 Score=85.08 Aligned_cols=53 Identities=45% Similarity=0.644 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
+..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..+..
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999986643
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.10 E-value=1.3e-10 Score=108.34 Aligned_cols=69 Identities=33% Similarity=0.393 Sum_probs=63.0
Q ss_pred ccCCccCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021244 230 LLGRKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLILFM 300 (315)
Q Consensus 230 ~~~rkr~~~~~~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l~~ 300 (315)
-+.|||.+. +|+ ..+||-+||++|||.+|+-+|.|||+++.++|.++..|++||+.|+.+++.|+..+.
T Consensus 53 ~~~rKr~RL-~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 53 QPKRKRRRL-DHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred chHHHHHhh-ccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999988 888 689999999999999999999999999999999999999999999999998875443
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.02 E-value=1.3e-09 Score=79.72 Aligned_cols=50 Identities=48% Similarity=0.683 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 246 VERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 246 ~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
++++.+|. +||+||++||.|||+|+.+||.+|..|+.+|..|..+++.|.
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777787 999999999999999999999999999999999999987654
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.86 E-value=2.3e-09 Score=107.70 Aligned_cols=54 Identities=35% Similarity=0.569 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.|+...||.||+|||.+||+.||+|||+|++.||.+|....+||++|+++++.+
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L 298 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL 298 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999988755
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.90 E-value=9.4e-07 Score=71.21 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
....|..||.+|||.+|++||.||..++.+||.++..|+.+...|.+++..+
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l 77 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSEL 77 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999988877777776665443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.64 E-value=0.00017 Score=68.64 Aligned_cols=66 Identities=26% Similarity=0.292 Sum_probs=49.3
Q ss_pred cCCccCCChhhhhhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 231 LGRKRGASEDMIEKTVERR-QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 231 ~~rkr~~~~~~~e~~~eKr-~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
++++-..+.-.+|..+..| .|..++||++|.+||+||-+++..||.+|..|+.+|..|-.++..++
T Consensus 188 ~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~ 254 (279)
T KOG0837|consen 188 PELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK 254 (279)
T ss_pred cccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Confidence 3455444422344444434 34478999999999999999999999999999999999877766553
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.99 E-value=0.0034 Score=59.87 Aligned_cols=58 Identities=29% Similarity=0.419 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 240 DMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 240 ~~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.+.|++..+-..|..||=++|++||.+.|.-..+...+|..|+.||+.|+.+++-++.
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556668999999999999999999999999999999999999887754
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.75 E-value=0.004 Score=60.26 Aligned_cols=50 Identities=28% Similarity=0.437 Sum_probs=40.9
Q ss_pred HHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 246 VERRQK-RMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 246 ~eKr~r-R~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.+|+.+ ..+.|..+|.|-|+||++-.+.|+.+...|+.+|++|+.+.+-+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL 274 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 45667778999999999999999999999999999999876544
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.89 E-value=0.0077 Score=63.26 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=42.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh
Q 021244 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK-QKVGFLIL 298 (315)
Q Consensus 248 Kr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~-~~el~~~l 298 (315)
|-.||.=|||.||++||+||-.-|..||.+|..|..|-++|.+ +.++++.|
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L 541 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTL 541 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667999999999999999999999999999999999866 46666443
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=95.78 E-value=0.053 Score=47.17 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
....|..||-+|||==|+-||-|+-.--.+||.+-..|..+.+.|+.+++
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s 98 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENS 98 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999999999765555555555555443
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.98 E-value=0.0072 Score=60.42 Aligned_cols=64 Identities=28% Similarity=0.337 Sum_probs=51.5
Q ss_pred CccCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q 021244 233 RKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLR-KQKVGFL 296 (315)
Q Consensus 233 rkr~~~~~~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~-~~~el~~ 296 (315)
.+........++.++++++-+++||.+|-+||.|||.++..|+.+...+..+|..|. .++++|.
T Consensus 270 ~~~~~s~~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~ 334 (395)
T KOG1414|consen 270 TGGVRSRTVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLR 334 (395)
T ss_pred cccccccccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHH
Confidence 343434344556778887779999999999999999999999999999999999998 5555553
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.04 E-value=0.014 Score=58.31 Aligned_cols=53 Identities=30% Similarity=0.311 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 021244 243 EKTVERRQKRMIKNRESAAR---SRARKQAYTNELENKVSRLE-EENERLRKQKVGF 295 (315)
Q Consensus 243 e~~~eKr~rR~iKNReSA~r---SR~RKkay~~eLE~kv~~Le-~EN~~L~~~~el~ 295 (315)
.+.+.|+..|+.+|+.+|.+ ||.||+.|+.+|+.+|+.|+ .+|..|..+++.+
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L 205 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL 205 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence 35789999999999999999 99999999999999999999 7776666555444
No 16
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=87.31 E-value=3.8 Score=39.23 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=49.0
Q ss_pred CCChhhhhhHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 021244 236 GASEDMIEKTVERRQKR----MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLILFMLFCIAVA 307 (315)
Q Consensus 236 ~~~~~~~e~~~eKr~rR----~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l~~~~~~~~~ 307 (315)
..+.+.-++....|++| +.|-|.+++.--..-+..+.+||.+...|+.++.+|++++..++.+...+-....
T Consensus 185 ~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 185 SSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred CCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 33445444444333333 4466666666556667788999999999999999999999988877655544433
No 17
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=81.03 E-value=2.2 Score=44.96 Aligned_cols=75 Identities=21% Similarity=0.113 Sum_probs=50.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhhh-------h
Q 021244 240 DMIEKTVERRQKRMIKNRESAA---RSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI------LFMLF-------C 303 (315)
Q Consensus 240 ~~~e~~~eKr~rR~iKNReSA~---rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~------l~~~~-------~ 303 (315)
..+-++..|..|-.+.-..|-+ +.-.-=++.++.|+.+-+.|+.||..|+++++++.. +++.+ +
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~R 356 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKR 356 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccch
Confidence 3343555555553443333322 223445688999999999999999999999998832 33444 6
Q ss_pred hhhhccccccc
Q 021244 304 IAVADLVVLLF 314 (315)
Q Consensus 304 ~~~~~~~vl~~ 314 (315)
.-+|-+++++|
T Consensus 357 kvvaimv~maF 367 (655)
T KOG4343|consen 357 KVVAIMVVMAF 367 (655)
T ss_pred hhhhHHHHHHH
Confidence 66788888887
No 18
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.30 E-value=3 Score=31.83 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 270 YTNELENKVSRLEEENERLRK 290 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~ 290 (315)
.|.+|+.++..|+.||.-|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555554443
No 19
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.49 E-value=2.9 Score=35.96 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 267 KQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
|..-+++|+.++..|+-||..|++++-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999874
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.70 E-value=6.1 Score=32.84 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 265 ARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.+.++.+.+++.+++.|+.+|..|+.+++.+++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445566788888899999999999998886653
No 21
>PHA03162 hypothetical protein; Provisional
Probab=77.33 E-value=1.6 Score=38.17 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
+++.-+++|+.++..|+-||..|++++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999998
No 22
>PHA03155 hypothetical protein; Provisional
Probab=75.67 E-value=3.6 Score=35.21 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
.-+++|+.++..|+-||..|++++
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999987
No 23
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.38 E-value=8.5 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
-++.|-.++..|++.|.+|..++.+++..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999988754
No 24
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.78 E-value=12 Score=28.05 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
..+..+..|+.+++.++.+|..|+.+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444667899999999999999999998876
No 25
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.35 E-value=35 Score=29.00 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVG 294 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el 294 (315)
+.....+..++.|+..-+..=..-+.+++.++..|..+|.-|..+++.
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445666777777767776677777888888888888888888874
No 26
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.39 E-value=12 Score=32.13 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRK 290 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~ 290 (315)
+.+.+||++++.|++||.-|+.
T Consensus 74 ~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 74 EQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666655555543
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.75 E-value=47 Score=30.83 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+.-+..++..+..|+++|++|+++++.+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666543
No 28
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=63.94 E-value=21 Score=26.60 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.....++..|+.||..|+.++++++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566789999999999999998765
No 29
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=63.92 E-value=7.2 Score=27.98 Aligned_cols=42 Identities=43% Similarity=0.436 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 250 ~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
.++...|++=|+..-.. ...+.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34455576665443333 3568899999999999999998875
No 30
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.42 E-value=31 Score=27.79 Aligned_cols=47 Identities=32% Similarity=0.438 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 247 ERRQKRMIKNRE-SAARSRARKQ----AYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 247 eKr~rR~iKNRe-SA~rSR~RKk----ay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
-+.+.++.++=+ |-.+-|.||. .-+..|..++..|+++|..|+++++
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444 3344455554 3567788899999999999998864
No 31
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.39 E-value=17 Score=29.69 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
-|+.+++.|+.++..++.+|..|..+++-.+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567789999999999999999999987543
No 32
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=60.11 E-value=12 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFLILFM 300 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~~l~~ 300 (315)
+-++-|..++..|++.|..|++++.+|+.+-+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 56788999999999999999999999976543
No 33
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=59.00 E-value=18 Score=30.64 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 021244 277 KVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 277 kv~~Le~EN~~L~~~~el~~~l 298 (315)
+...|++||+-|+-++++|.+.
T Consensus 80 k~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988765
No 34
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=56.97 E-value=1.1e+02 Score=30.35 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=36.2
Q ss_pred hHHHHHHHHHH---HhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021244 244 KTVERRQKRMI---KNRESAARSRARKQAY---TNELENKVSRLEEENERLRKQKVGFLILF 299 (315)
Q Consensus 244 ~~~eKr~rR~i---KNReSA~rSR~RKkay---~~eLE~kv~~Le~EN~~L~~~~el~~~l~ 299 (315)
....||+.+++ |-|+ +-|+.+.+- ++.||.+...|+..-.+|.+|+..++.+.
T Consensus 227 ~~~rkr~qnk~AAtRYRq---KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQ---KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777766 3333 334444444 45667889999999999999998887663
No 35
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=55.84 E-value=57 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.....+..++.+++.++.||.+|+.+..-+.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556788889999999999999998875543
No 36
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.67 E-value=31 Score=32.91 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021244 241 MIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLILF 299 (315)
Q Consensus 241 ~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l~ 299 (315)
.+...-..|-|-..||.|==.+-|+= +.-+..|..+|+.|+..|.+|-+++.++...+
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~-~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQ-QQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 45445566666677777755554333 34578889999999999999999998876554
No 37
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=53.71 E-value=26 Score=29.16 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+.+|+.++..|+.||.-|++-.++.
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555444
No 38
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=53.20 E-value=42 Score=34.51 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhHHH-------------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 244 KTVERRQKRMIKNRES-------------------------AAR--SRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 244 ~~~eKr~rR~iKNReS-------------------------A~r--SR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
..+|||+|-.|.+|.- +-. +=+++.+...|++.+-+.|+..|++|..+++-|.
T Consensus 238 NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 238 NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELK 317 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 3578888888877642 111 1123334455666777788888888887777654
No 39
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=52.99 E-value=62 Score=25.67 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFLILFMLF 302 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~~l~~~~ 302 (315)
++.|+.+...|+.||.+|+-|.+-+.++....
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe 75 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSSPSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 78899999999999999999887665544433
No 40
>PF14645 Chibby: Chibby family
Probab=51.30 E-value=26 Score=29.75 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 274 LENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 274 LE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
|..+...|++||+-|+-++++|.+.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445778999999999999988654
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.68 E-value=32 Score=24.83 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021244 274 LENKVSRLEEENERLRKQKVGFLILFM 300 (315)
Q Consensus 274 LE~kv~~Le~EN~~L~~~~el~~~l~~ 300 (315)
|..=-+.|.+||.+|+++++-|+.++.
T Consensus 10 LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445567899999999999998877643
No 42
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=49.90 E-value=1.1e+02 Score=28.44 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 245 TVERRQKRMIKNRESAARSRARKQA----YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKka----y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
...+|+||....+.++-.-+-+=-. +++..=.+|..|++.|++|+.+++-|+.|
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888887777777544443222 22233356788999999999988866655
No 43
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.04 E-value=32 Score=29.17 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 267 KQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
=|.++.+|.++...|+-||..|++.++-+
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777778888888887777643
No 44
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=47.72 E-value=31 Score=26.24 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+++|+.++..|+.|..+++.++.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888887764
No 45
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=47.27 E-value=1e+02 Score=29.88 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHH-----HhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 241 MIEKTVERRQKRMI-----KNRESAARSRARKQAY-TNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 241 ~~e~~~eKr~rR~i-----KNReSA~rSR~RKkay-~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.-||...|+++-.+ +-|..| |.-+-+| +.+|+++-..|..||+.|+++++-|
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKa---Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKA---RMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666333 333333 3344444 6789999999999999998887755
No 46
>KOG2829 consensus E2F-like protein [Transcription]
Probab=46.74 E-value=49 Score=32.80 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENE 286 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~ 286 (315)
+++.++.|+|||.+= .+|++|++||+.++..++.-.+
T Consensus 134 v~~le~Er~k~~erI--------~kK~a~lqEl~~q~~~fknLV~ 170 (326)
T KOG2829|consen 134 VSELEEERKKRMERI--------KKKAAQLQELIEQVSAFKNLVQ 170 (326)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554433 7889999999999887765433
No 47
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=46.30 E-value=17 Score=26.66 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLR 289 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~ 289 (315)
.++.|||.+|..|+.-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 455667777776666666553
No 48
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.89 E-value=50 Score=27.05 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+.+|+.++..|..||.+|+.+++..
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555433
No 49
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.55 E-value=61 Score=26.60 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 265 ARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.=||-|=...|.+|..|+.+|..|.++++.|+
T Consensus 38 ~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 38 ALKKSYEARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999999999999999765
No 50
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.88 E-value=41 Score=28.19 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.++.+|.++-..|+-||..|++.+.
T Consensus 29 ~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 29 KQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666554
No 51
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.84 E-value=1e+02 Score=31.25 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 265 ARKQAYTNELENKVSRLEEENERLR 289 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~ 289 (315)
.+|++|+..||.||.+|-.|...|-
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999888764
No 52
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.57 E-value=2.7e+02 Score=26.63 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 258 ESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 258 eSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
..++|-|=| ....|||.++..++.++..|+.+++-++
T Consensus 84 VtsQRDRFR--~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 84 VTSQRDRFR--QRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345565555 5669999999999999999999988764
No 53
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=42.37 E-value=1.8e+02 Score=26.73 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 264 RARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 264 R~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
=++|++|+.+-+.+...++.+..+|+.+++..
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888887643
No 54
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.72 E-value=82 Score=32.96 Aligned_cols=54 Identities=28% Similarity=0.303 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAY-------T---NELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay-------~---~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
|++.|+.|-|+.-.||-++....=+.. + .+|..+|..|+.+|..|..++.-+..
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 788888888888888888776654332 2 57889999999999999988876644
No 55
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.33 E-value=50 Score=27.71 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+-+.+|...+..|.+||.+|+.+++-|+..
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999999988654
No 56
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.81 E-value=72 Score=22.83 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+.|......|..||+.|+.++..+.
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888876543
No 57
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.66 E-value=54 Score=28.17 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (315)
-.|..|..++|+.+ .++.+++||.++..|+.+++++++
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444433 335667778888887777776653
No 58
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.12 E-value=1.1e+02 Score=27.81 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 263 SRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 263 SR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
-..+.+..+.+|..++..|+.||..|.++++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677788888888888888877765
No 59
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=39.74 E-value=73 Score=32.66 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
..++|.|.+|+.-|+- |.++-.|..+-..-+..|+.|-++|.+++|+.
T Consensus 111 AaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEFe 158 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEFE 158 (561)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766643 45555666666666778888888888887766
No 60
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=39.39 E-value=2.1e+02 Score=23.37 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+.+..|-++.-+.+.+.+..|.+-+..|..++..|+.++..|...++-.
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666667777777778888888888888888888877644
No 61
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.30 E-value=1.6e+02 Score=22.79 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 251 KRMIKNRESAARSRARKQAYTNELENKVSRLEEENER 287 (315)
Q Consensus 251 rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~ 287 (315)
+++.+-|.+|.++=..+-.-+.+|-.++..|+.|+..
T Consensus 29 k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 29 KRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666555544444444444444444444433
No 62
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.74 E-value=60 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021244 273 ELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 273 eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.++..+..++.||++|++.++-+
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777666644
No 63
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.57 E-value=75 Score=24.86 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+++|..+...|..+|..|+.+++
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.18 E-value=3e+02 Score=25.27 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVG 294 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el 294 (315)
-..+++.+++-++-+.+=..-++.+..++.++..|+-|++.|..+++-
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777766666666777778888888888888877766543
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.00 E-value=2.7e+02 Score=24.52 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 240 DMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 240 ~~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+++ ...++.+.....|++.+-.--.-+|+.+..|+.++..+..+...|..++..+
T Consensus 24 ~~v-~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 24 DHV-ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 2567777778888888888888888888888888887776666666555433
No 66
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.76 E-value=69 Score=27.16 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+-+.+|...+..|-+||..|+.+++-|+..
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999988654
No 67
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.93 E-value=1.7e+02 Score=25.20 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 252 RMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 252 R~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
|..+.|-.+--.|+==|+.|..||-+.+.++.-|..|.+.+..|
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778877888888889999988888888888888887766
No 68
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.82 E-value=1.7e+02 Score=32.94 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=8.3
Q ss_pred CCCCCCCCCccHHHH
Q 021244 46 GDLGKPLSSMNLDEL 60 (315)
Q Consensus 46 g~~GK~fgSMNmDEl 60 (315)
.++.|| |-||.-||
T Consensus 58 sDldkD-Grmdi~Ef 71 (1118)
T KOG1029|consen 58 SDLDKD-GRMDIREF 71 (1118)
T ss_pred hhcCcc-ccchHHHH
Confidence 344443 66777776
No 69
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.69 E-value=98 Score=24.23 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 272 NELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~ 292 (315)
..|......|+.+|.+|+.+.
T Consensus 35 ~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 35 NELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666665543
No 70
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.46 E-value=1.5e+02 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 021244 263 SRARKQAYTNELENKVSRL---EEENERLRKQ 291 (315)
Q Consensus 263 SR~RKkay~~eLE~kv~~L---e~EN~~L~~~ 291 (315)
.-++|++|+++|..+...| -..|.++...
T Consensus 16 rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 16 RIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3478999999999876644 4455555443
No 71
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.30 E-value=1.1e+02 Score=28.27 Aligned_cols=24 Identities=33% Similarity=0.213 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 270 YTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.+.+|+.+|..|+.+.+++++.+.
T Consensus 107 e~~elr~~~~~l~~~i~~~~~~~~ 130 (181)
T KOG3335|consen 107 EIMELRLKVEKLENAIAELTKFFS 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 72
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=35.17 E-value=26 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=11.8
Q ss_pred cccchhhccccHHHHHHHH
Q 021244 88 LSLTSALSKKTVDEVWRDI 106 (315)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI 106 (315)
.++-.+|||-|-++.|+-+
T Consensus 4 ~~~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 4 ESPELPLSQETFSDLWNLL 22 (25)
T ss_dssp SS-----STCCHHHHHHTS
T ss_pred cCCCCCccHHHHHHHHHhc
Confidence 4556789999999999854
No 73
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=34.81 E-value=19 Score=28.62 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=10.7
Q ss_pred ccchHHHHHHHh
Q 021244 125 GEMTLEDFLVKA 136 (315)
Q Consensus 125 GEMTLEdFLvrA 136 (315)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 789999999984
No 74
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.54 E-value=63 Score=25.04 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 270 YTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
-+.||+.++.-|+.|.++|+.++.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999988764
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=34.50 E-value=79 Score=33.72 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021244 276 NKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 276 ~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.||..||.||..|..++.+++.
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999988854
No 76
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.13 E-value=56 Score=24.05 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 021244 277 KVSRLEEENER 287 (315)
Q Consensus 277 kv~~Le~EN~~ 287 (315)
+++.++.|+++
T Consensus 56 ~l~~le~e~~~ 66 (68)
T PF06305_consen 56 ELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 77
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=33.96 E-value=75 Score=26.43 Aligned_cols=29 Identities=3% Similarity=-0.090 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFLILF 299 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~~l~ 299 (315)
+..++.++..|+.++.+|+.++++|+.+-
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999987654
No 78
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.31 E-value=1.1e+02 Score=28.62 Aligned_cols=15 Identities=47% Similarity=0.463 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 021244 280 RLEEENERLRKQKVG 294 (315)
Q Consensus 280 ~Le~EN~~L~~~~el 294 (315)
.|++||++|++.+.+
T Consensus 97 ~l~~en~~L~~lL~~ 111 (276)
T PRK13922 97 QLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHhcC
Confidence 556666666665543
No 79
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=32.99 E-value=1.9e+02 Score=24.52 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+.+..+|-.|||||- +-|+.++-.....-.-|..+|.-+..+...+..|
T Consensus 52 R~K~E~~~q~r~rES~----~Er~K~~~s~~~~q~Lm~rQN~mm~~qqqsidsl 101 (121)
T PF10669_consen 52 RSKKEEKRQKRNRESK----RERQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSL 101 (121)
T ss_pred HHHHHHHHHHHhhhhH----HHHHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3334445566798886 3344455555555555788888887777655544
No 80
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.92 E-value=63 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.|++.|...+..|..+|..|+.+++-+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777776666544
No 81
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.09 E-value=85 Score=24.35 Aligned_cols=12 Identities=58% Similarity=0.742 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 021244 280 RLEEENERLRKQ 291 (315)
Q Consensus 280 ~Le~EN~~L~~~ 291 (315)
.|+.||..|+.+
T Consensus 18 ~L~~EN~~Lr~q 29 (65)
T TIGR02449 18 RLKSENRLLRAQ 29 (65)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 82
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=2.3e+02 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Q 021244 253 MIKNRESAARSRARKQAYTNELENKVSRLE----EENERLRKQKVGFL 296 (315)
Q Consensus 253 ~iKNReSA~rSR~RKkay~~eLE~kv~~Le----~EN~~L~~~~el~~ 296 (315)
+.+--.+.+..+.+.+.-++.||++++..+ +.+..|..+++.++
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 333344566677788888899999999888 55555666666554
No 83
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.55 E-value=2.9e+02 Score=23.59 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 248 Kr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
....|=...|+.......++..-+..|+..+..|+.++..+.+++...
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566777777777777777777777777777777777766533
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.10 E-value=1.9e+02 Score=30.46 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 270 YTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
...++|++++.|+.||.+|+.+++
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999985
No 85
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=30.80 E-value=25 Score=27.50 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=13.5
Q ss_pred ccccchHHHHHHHhcc
Q 021244 123 TLGEMTLEDFLVKAGV 138 (315)
Q Consensus 123 TLGEMTLEdFLvrAGV 138 (315)
-|=.||.|||+.||+.
T Consensus 39 ~LC~ls~edF~~~~p~ 54 (71)
T cd08533 39 DLCALGKERFLELAPD 54 (71)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4568999999999974
No 86
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=29.93 E-value=28 Score=26.73 Aligned_cols=17 Identities=47% Similarity=0.497 Sum_probs=14.9
Q ss_pred cccccchHHHHHHHhcc
Q 021244 122 ATLGEMTLEDFLVKAGV 138 (315)
Q Consensus 122 ~TLGEMTLEdFLvrAGV 138 (315)
..|=.||.|||+.||+.
T Consensus 38 k~LC~ms~edF~~~~p~ 54 (68)
T cd08757 38 QTLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHHcCCHHHHHHHcCC
Confidence 46778999999999986
No 87
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.72 E-value=1.1e+02 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+.+||+++..++.....++++++-++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~ 27 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEIS 27 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665443
No 88
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.61 E-value=1.4e+02 Score=23.92 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.-+..|=.+|...++||.+|..+++.|...
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666678888888888888888877643
No 89
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=29.30 E-value=29 Score=27.33 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=14.4
Q ss_pred cccccchHHHHHHHhccc
Q 021244 122 ATLGEMTLEDFLVKAGVV 139 (315)
Q Consensus 122 ~TLGEMTLEdFLvrAGVV 139 (315)
..|=.||.|||+.+|+-.
T Consensus 40 k~LC~lt~edF~~~~~~~ 57 (75)
T cd08531 40 KELCKMTKEDFLRLTSAY 57 (75)
T ss_pred HHHHcCCHHHHHHHcCCC
Confidence 356689999999998654
No 90
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.13 E-value=3.1e+02 Score=22.14 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
...+|+.+.+.+=+++-..|.-+..-..+||.++..|.....+|-.++.
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD 56 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELD 56 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 4566666777777766666666655557777777777776666665554
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.42 E-value=2.6e+02 Score=29.20 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 268 QAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
++.+.++|.++..|++||..|..+.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999987654
No 92
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=28.31 E-value=31 Score=26.21 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=14.7
Q ss_pred cccccchHHHHHHHhcc
Q 021244 122 ATLGEMTLEDFLVKAGV 138 (315)
Q Consensus 122 ~TLGEMTLEdFLvrAGV 138 (315)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 46778999999999986
No 93
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.30 E-value=2.2e+02 Score=26.98 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 249 RQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 249 r~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+.+...+-=+.|+....-=+.+.+++-.+...|.+|++.|+.+++
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444556666677777777777777664
No 94
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=28.03 E-value=53 Score=32.99 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=46.2
Q ss_pred ccccccccccch----hhccccHHHHHHHHhhc-----cC-----------------CCCCCcccccccc-ccchHHHHH
Q 021244 81 SLQRQASLSLTS----ALSKKTVDEVWRDIQQS-----KS-----------------SGEKKPRDRQATL-GEMTLEDFL 133 (315)
Q Consensus 81 ~LqrQgSltLp~----~ls~KTVDEVWrdI~~~-----~~-----------------~~~~~~~~rQ~TL-GEMTLEdFL 133 (315)
.....|.+++|- ....||++|+=++|.+. .+ .+++..+.+.+-- .-|||-|.|
T Consensus 119 ~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~L~~~~~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tlldaI 198 (379)
T PRK15078 119 WVHADGTIFYPYIGKVHVAGKTVTEIRSDITGRLAKYIESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDAI 198 (379)
T ss_pred EECCCCeEeeccCceEEECCCCHHHHHHHHHHHHHHhccCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHHH
Confidence 466889999996 47999999999999864 00 1234445565532 358999999
Q ss_pred HHhccccccC
Q 021244 134 VKAGVVAEAS 143 (315)
Q Consensus 134 vrAGVV~e~~ 143 (315)
.+||-+++..
T Consensus 199 a~AGG~~~~a 208 (379)
T PRK15078 199 NAAGGLTDDA 208 (379)
T ss_pred HHccCCCccc
Confidence 9999988763
No 95
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.92 E-value=87 Score=32.83 Aligned_cols=18 Identities=44% Similarity=0.586 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021244 273 ELENKVSRLEEENERLRK 290 (315)
Q Consensus 273 eLE~kv~~Le~EN~~L~~ 290 (315)
.|+.+.+.|++||++|++
T Consensus 77 ~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 77 KLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 96
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=27.67 E-value=35 Score=26.79 Aligned_cols=29 Identities=28% Similarity=0.717 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHhhccCCCCCCccccccccccchHHHHHHHh
Q 021244 95 SKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKA 136 (315)
Q Consensus 95 s~KTVDEVWrdI~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrA 136 (315)
+..-|+++|+++-..+ =|.+|.+||+.--
T Consensus 49 ~~~~v~~i~~~~D~d~-------------dG~I~f~eF~~~~ 77 (88)
T cd05030 49 NQKAIDKIFEDLDTNQ-------------DGQLSFEEFLVLV 77 (88)
T ss_pred CHHHHHHHHHHcCCCC-------------CCcCcHHHHHHHH
Confidence 3667888888773321 2789999998643
No 97
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=27.53 E-value=1.5e+02 Score=25.44 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
-+.++.+++.|+.+..+|..+++-+
T Consensus 107 e~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 107 EEELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888999999998887643
No 98
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.45 E-value=2.3e+02 Score=23.58 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFLILFMLFC 303 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~~l~~~~~ 303 (315)
+.+..|+.++..|+.+..+|.+.++.+......+|
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888777766665544443
No 99
>PHA02675 ORF104 fusion protein; Provisional
Probab=27.18 E-value=3.6e+02 Score=22.24 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
-++..++|+.++++.=+---.|...--+.+.-||...+.|.+-.-.|-+++.
T Consensus 31 ~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKID 82 (90)
T PHA02675 31 SKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKID 82 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3467888999988877766677777777788888877777777777766654
No 100
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.13 E-value=3.8e+02 Score=27.27 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 239 EDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 239 ~~~~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.+-+..+.+++.-|..+--++-+|.-.-=+.=..+|+..+..||.+-..|.+..++|..
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
No 101
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.11 E-value=1e+02 Score=29.76 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
-+..+..++..|++||++|++.+-+-
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34556678999999999999887544
No 102
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=25.75 E-value=1.2e+02 Score=31.03 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccc
Q 021244 279 SRLEEENERLRKQKVGFLILFMLFCIAVADLVVLL 313 (315)
Q Consensus 279 ~~Le~EN~~L~~~~el~~~l~~~~~~~~~~~~vl~ 313 (315)
+.||.|.-+|++++ |.+..|+..+.+..+.
T Consensus 62 e~LE~EvLqlrQeL-----Ll~r~~s~~~~~~~~~ 91 (375)
T PF13971_consen 62 EALEAEVLQLRQEL-----LLNRICSGLFSSGHLA 91 (375)
T ss_pred HHHHHHHHHHHHHH-----HHHhcccccccccCCC
Confidence 34444444455544 3344455555554443
No 103
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=25.69 E-value=37 Score=26.82 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.1
Q ss_pred ccccchHHHHHHHhccc
Q 021244 123 TLGEMTLEDFLVKAGVV 139 (315)
Q Consensus 123 TLGEMTLEdFLvrAGVV 139 (315)
-|=.||.|||+.+|+..
T Consensus 41 ~LC~LskedF~~~ap~~ 57 (75)
T cd08540 41 ELCKMTKDDFQRLTPSY 57 (75)
T ss_pred HHHhCCHHHHHHHcCCC
Confidence 45689999999999754
No 104
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=25.51 E-value=4.1e+02 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
-+-.+|.++..|...|++|.++++.+.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999988774
No 105
>PHA03161 hypothetical protein; Provisional
Probab=25.30 E-value=3.7e+02 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 258 ESAARSRARKQAYTNELENKVSRLEEEN 285 (315)
Q Consensus 258 eSA~rSR~RKkay~~eLE~kv~~Le~EN 285 (315)
++-..--.||-++++.|-.+|..|+++.
T Consensus 78 ~~L~~fd~kkl~~~E~L~drv~eLkeel 105 (150)
T PHA03161 78 SLLKAFDRHKLSAAEDLQDKILELKEDI 105 (150)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555666666666666666543
No 106
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.25 E-value=1.3e+02 Score=25.01 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021244 266 RKQAYTNELENKVSRLEE 283 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~ 283 (315)
+.++.-..|+.+|+.|+.
T Consensus 45 ~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 45 KLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 334444455555555543
No 107
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.93 E-value=3.2e+02 Score=25.42 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 253 ~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
....|--+--.+..+.+-+.++|.++...+.|.+.++.++..+.
T Consensus 146 ~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 146 AEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444566778888999999999999999988876553
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.92 E-value=1.1e+02 Score=29.60 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.+|+.....|++||++|++.+.+-.
T Consensus 87 ~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4445555569999999999887654
No 109
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.21 E-value=2.6e+02 Score=30.64 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.3
Q ss_pred HHHHHH
Q 021244 274 LENKVS 279 (315)
Q Consensus 274 LE~kv~ 279 (315)
||.++.
T Consensus 550 lE~E~~ 555 (697)
T PF09726_consen 550 LESELK 555 (697)
T ss_pred HHHHHH
Confidence 333333
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.87 E-value=2.5e+02 Score=31.78 Aligned_cols=9 Identities=22% Similarity=0.852 Sum_probs=4.6
Q ss_pred HHhhhcchh
Q 021244 60 LLKNVWTAE 68 (315)
Q Consensus 60 lLknIwtaE 68 (315)
.|.-||.--
T Consensus 50 VLaqIWALs 58 (1118)
T KOG1029|consen 50 VLAQIWALS 58 (1118)
T ss_pred HHHHHHHhh
Confidence 455566443
No 111
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.36 E-value=37 Score=32.44 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=12.1
Q ss_pred hccccHHHHHHHHhh
Q 021244 94 LSKKTVDEVWRDIQQ 108 (315)
Q Consensus 94 ls~KTVDEVWrdI~~ 108 (315)
||.+-|+||||++.=
T Consensus 1 ls~~~v~evW~~~tl 15 (235)
T cd04405 1 LSPEVVEEIWKEQTL 15 (235)
T ss_pred CCHHHHHHHHHHHHH
Confidence 467789999999753
No 112
>COG5562 Phage envelope protein [General function prediction only]
Probab=23.07 E-value=41 Score=29.73 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=14.4
Q ss_pred ccchHHHH---HHHhccccc
Q 021244 125 GEMTLEDF---LVKAGVVAE 141 (315)
Q Consensus 125 GEMTLEdF---LvrAGVV~e 141 (315)
||.|.|+| |.+|||.|=
T Consensus 87 GqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 87 GQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred CCccHHHHHHHHHhCCeEEE
Confidence 78899999 689999873
No 113
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.88 E-value=5.4e+02 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELEN 276 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~ 276 (315)
...++|+.+...+-..|.+.+..=.+...+.|.
T Consensus 37 ~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~ 69 (155)
T PRK06569 37 EIFNNRQTNIQDNITQADTLTIEVEKLNKYYNE 69 (155)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444443333333333
No 114
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=22.75 E-value=43 Score=26.49 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=31.1
Q ss_pred cccchhhccccHHHHHHHHhhc---cCCCC--CCccccccccccchHHHHHHHhcc
Q 021244 88 LSLTSALSKKTVDEVWRDIQQS---KSSGE--KKPRDRQATLGEMTLEDFLVKAGV 138 (315)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~~---~~~~~--~~~~~rQ~TLGEMTLEdFLvrAGV 138 (315)
|.+|..-..=|.+.|+.=+.-- -+-.. ....---..|=.||.|||+.|++.
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 4566666667888888766532 11111 111122346778999999999865
No 115
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.56 E-value=4.8e+02 Score=22.10 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (315)
+-+..++|..+..++-+.|...+..=.+...+.+.++...+.+-.++..
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666667666666666666666666655555555443
No 116
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=22.50 E-value=3.4e+02 Score=23.51 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 265 ARKQAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
..--.+|-.|.++...|++||..|+.++
T Consensus 92 ~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 92 LQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4445678889999999999999999876
No 117
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=22.43 E-value=5.7e+02 Score=22.95 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.....++..+++|+.|..|+--=+.|-+-..+|..++..-++...++.+.+.
T Consensus 78 Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~ 129 (152)
T PF11500_consen 78 YHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVT 129 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777888887777655556666666676666655555555555554
No 118
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.28 E-value=94 Score=29.95 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=4.0
Q ss_pred HHHHHHhhh
Q 021244 288 LRKQKVGFL 296 (315)
Q Consensus 288 L~~~~el~~ 296 (315)
|++|++-|+
T Consensus 96 l~~EN~rLr 104 (283)
T TIGR00219 96 LKQENVRLR 104 (283)
T ss_pred HHHHHHHHH
Confidence 444444443
No 119
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.25 E-value=5.1e+02 Score=22.35 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENER 287 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~ 287 (315)
..++|+.++...-..|.+.+..=.+...+.|.++...+.+-.+
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ 92 (156)
T CHL00118 50 VLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQL 92 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444444444444444443333
No 120
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=22.17 E-value=3.6e+02 Score=26.82 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 250 ~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
...+.+.++.....-.+|++|+..|..+++.|..--..++..+.
T Consensus 110 ~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 110 LKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 33456677777788889999999999999988888887776664
No 121
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=22.15 E-value=6.6e+02 Score=23.60 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHhhhhhhhhhhhhh
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRL-------EEENERLRK-QKVGFLILFMLFCIAV 306 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~L-------e~EN~~L~~-~~el~~~l~~~~~~~~ 306 (315)
+..+|-+-++.|-+.++..++.+-+.++..|+.--... ...-+.|.. ++.+++..-..|||.+
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n~~ 224 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVNQL 224 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34556667788899999999999999999997633333 333444443 5777776667777755
No 122
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.02 E-value=4.7e+02 Score=23.22 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVG 294 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el 294 (315)
++-+++|+.+++..+.+.+.|++|.+-
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666653
No 123
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=21.90 E-value=3.6e+02 Score=24.90 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 253 ~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+++-|.++..-|.+-+.|..+||.+=..|+....-.+.++..|
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~l 160 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARL 160 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455666666777888899999998888888888888887755
No 124
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.85 E-value=4.7e+02 Score=27.55 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=16.1
Q ss_pred cccccccccchHHHHHHHhcccccc
Q 021244 118 RDRQATLGEMTLEDFLVKAGVVAEA 142 (315)
Q Consensus 118 ~~rQ~TLGEMTLEdFLvrAGVV~e~ 142 (315)
..-+..||+..+++|+- .+++.
T Consensus 68 ~es~~glg~nsfp~~ys---e~r~~ 89 (502)
T KOG0982|consen 68 FESQMGLGLNSFPKRYS---ELRER 89 (502)
T ss_pred cccccCcccccchHHHH---HHhcC
Confidence 45678889999999987 44544
No 125
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=21.68 E-value=77 Score=25.85 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=33.5
Q ss_pred cccccchhhccccHHHHHHHHhhc---cCCCCCC---ccccccccccchHHHHHHHhcc
Q 021244 86 ASLSLTSALSKKTVDEVWRDIQQS---KSSGEKK---PRDRQATLGEMTLEDFLVKAGV 138 (315)
Q Consensus 86 gSltLp~~ls~KTVDEVWrdI~~~---~~~~~~~---~~~rQ~TLGEMTLEdFLvrAGV 138 (315)
.-+.+|.+-..=|.+.||.=+.-. -+..+.. ..---..|=.||.|||+.||..
T Consensus 11 ~rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 11 ERLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred HhcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 347778888888899998766532 1111111 1111234668999999999974
No 126
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=21.67 E-value=31 Score=30.12 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=52.6
Q ss_pred HHHHhhhcchhhhccccccccccccccccccccch----hhccccHHHHHHHHhhc-----cC----------C------
Q 021244 58 DELLKNVWTAEVEMEGTTLAEQTSLQRQASLSLTS----ALSKKTVDEVWRDIQQS-----KS----------S------ 112 (315)
Q Consensus 58 DElLknIwtaEe~~~~~~~~~~~~LqrQgSltLp~----~ls~KTVDEVWrdI~~~-----~~----------~------ 112 (315)
|.|-=+||...+.. ........|.++||- ..+.+|++|+=++|.+. .+ .
T Consensus 7 D~l~i~v~~~~~~~------~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~~~~p~v~V~v~~~~~~~~~~ 80 (165)
T TIGR03027 7 DSLNINVWRNPELS------GSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAKYVRNPVVTVIVTGFIGPFSEQ 80 (165)
T ss_pred CEEEEEEcCCcccc------cceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHHhccCCeEEEEEeecccCCCcE
Confidence 44555678765511 112356778899986 47999999999999864 10 0
Q ss_pred ----CCCCccccccccccchHHHHHHHhcccccc
Q 021244 113 ----GEKKPRDRQATLGEMTLEDFLVKAGVVAEA 142 (315)
Q Consensus 113 ----~~~~~~~rQ~TLGEMTLEdFLvrAGVV~e~ 142 (315)
+.+..+.+-+--..|||-|.|..||=+.+.
T Consensus 81 V~V~GeV~~PG~y~~~~~~tl~~ai~~AGG~~~~ 114 (165)
T TIGR03027 81 IRVVGAAANPQALPYREGMTLLDVMIAVGGLTDF 114 (165)
T ss_pred EEEEEEeCCCceeeeCCCCcHHHHHHHcCCCCcc
Confidence 123334455555679999999999977654
No 127
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=21.54 E-value=87 Score=29.94 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+.+||.+|+.|..|-++|+++-|
T Consensus 20 vreleakveelnkereelkkere 42 (347)
T PF06673_consen 20 VRELEAKVEELNKEREELKKERE 42 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 56899999999999999988765
No 128
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.22 E-value=5.8e+02 Score=22.79 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENK 277 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~k 277 (315)
++|+.++.+.-+.|.+.+..=.....+.|.+
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~ 91 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKA 91 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444333333333333333
No 129
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=20.83 E-value=1.5e+02 Score=32.77 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 256 NRESAARSRARKQAYTNELENKVSRL 281 (315)
Q Consensus 256 NReSA~rSR~RKkay~~eLE~kv~~L 281 (315)
.-+=|+-|...||+|++||+-+++-|
T Consensus 418 ksq~~kl~k~q~k~y~de~dyr~kl~ 443 (763)
T TIGR00993 418 KAQMAKLSKEQRKAYLEEYDYRVKLL 443 (763)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999876643
No 130
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=20.83 E-value=4.6e+02 Score=27.16 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021244 246 VERRQKRMIKNRESAARSRARKQAYTNELEN 276 (315)
Q Consensus 246 ~eKr~rR~iKNReSA~rSR~RKkay~~eLE~ 276 (315)
.+|.+||+.-.-+=-+|-|..=..+|.+|-.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3343444444445555666666677777754
No 131
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.80 E-value=4.8e+02 Score=22.53 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 021244 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ-KVGF 295 (315)
Q Consensus 253 ~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~-~el~ 295 (315)
+.+.-........+=.+|+.+||..+..++.++.++.+. ...+
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 334444555666777799999999999999999998877 4433
No 132
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.78 E-value=2.2e+02 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhhhhccccc
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKVGFLILF--MLFCIAVADLVVL 312 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l~--~~~~~~~~~~~vl 312 (315)
.+++-.+.||.+|.+|..+..+++++..+.+.=. -+..+.-++.||+
T Consensus 136 ~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm 184 (215)
T KOG1690|consen 136 QIKETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVM 184 (215)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceee
Confidence 3445566777777777777777777666554221 2334445555554
No 133
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.66 E-value=2.5e+02 Score=22.96 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021244 278 VSRLEEENERLRKQK 292 (315)
Q Consensus 278 v~~Le~EN~~L~~~~ 292 (315)
...|.+||+.|+.+.
T Consensus 32 ~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 32 NAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 134
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=1.1e+02 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVG 294 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el 294 (315)
+-++-+|.++..|+.--..+..+...
T Consensus 134 eklep~E~elrrLed~~~sI~~e~~Y 159 (210)
T KOG1691|consen 134 EKLEPLEVELRRLEDLVESIHEEMYY 159 (210)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 135
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.27 E-value=7e+02 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLR 289 (315)
Q Consensus 253 ~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~ 289 (315)
+.+-.+....-.++-+.|+..++.++..|+.+...+.
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555555555444443
No 136
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=20.17 E-value=1.8e+02 Score=27.73 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 021244 265 ARKQAYTNELENK-------VSRLEEENERLRKQKV 293 (315)
Q Consensus 265 ~RKkay~~eLE~k-------v~~Le~EN~~L~~~~e 293 (315)
.|.++|+..|+.+ +++|+.+|..|+++++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999865 4566666666666665
No 137
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.04 E-value=5.7e+02 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENER 287 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~ 287 (315)
+..++|+.++..+-+.|...+..=.+...+.|.++...+.+-..
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ 78 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDA 78 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655555555555555555544333
No 138
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.01 E-value=4.7e+02 Score=24.47 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENE 286 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~ 286 (315)
-++|++++..|+.++.
T Consensus 78 n~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 78 NEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555544444
Done!