Query 021244
Match_columns 315
No_of_seqs 220 out of 847
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 2E-14 6.7E-19 105.4 7.3 50 248-297 1-50 (55)
2 2wt7_A Proto-oncogene protein 99.3 1E-11 3.5E-16 92.9 7.7 51 247-297 1-51 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 3E-11 1E-15 89.5 7.5 50 248-297 1-50 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 5.9E-11 2E-15 89.1 7.0 52 246-297 7-58 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.8E-10 6.1E-15 85.7 7.5 50 248-297 1-50 (62)
6 1ci6_A Transcription factor AT 98.8 1.4E-08 4.8E-13 76.0 6.5 50 248-297 2-51 (63)
7 1gu4_A CAAT/enhancer binding p 98.5 4.3E-07 1.5E-11 70.9 7.4 56 242-297 9-64 (78)
8 1hjb_A Ccaat/enhancer binding 98.4 1.2E-06 4E-11 69.7 8.2 55 242-296 9-63 (87)
9 1gd2_E Transcription factor PA 98.3 1.8E-06 6.2E-11 66.1 8.0 47 250-296 10-56 (70)
10 3a5t_A Transcription factor MA 98.2 2.6E-07 8.8E-12 76.1 0.8 52 242-293 31-82 (107)
11 2wt7_B Transcription factor MA 97.7 0.00019 6.5E-09 57.4 9.7 52 244-295 23-74 (90)
12 1skn_P DNA-binding domain of S 96.0 0.0038 1.3E-07 49.8 2.9 33 244-276 58-90 (92)
13 2oqq_A Transcription factor HY 95.5 0.019 6.5E-07 39.7 4.7 30 268-297 2-31 (42)
14 2c9l_Y EB1, zebra, BZLF1 trans 91.7 0.61 2.1E-05 34.2 6.8 39 253-291 6-44 (63)
15 2oxj_A Hybrid alpha/beta pepti 90.5 0.33 1.1E-05 32.1 3.9 29 270-298 2-30 (34)
16 3m48_A General control protein 90.2 0.31 1.1E-05 32.1 3.6 28 271-298 2-29 (33)
17 3s9g_A Protein hexim1; cyclin 89.7 1.6 5.3E-05 35.4 8.1 29 268-296 64-92 (104)
18 2kz5_A Transcription factor NF 87.8 0.059 2E-06 43.0 -1.4 26 244-269 62-87 (91)
19 1kd8_B GABH BLL, GCN4 acid bas 87.6 0.8 2.7E-05 30.6 4.2 29 270-298 2-30 (36)
20 3c3f_A Alpha/beta peptide with 86.7 0.85 2.9E-05 30.1 3.9 29 270-298 2-30 (34)
21 3he5_A Synzip1; heterodimeric 86.5 1.1 3.8E-05 31.1 4.6 29 270-298 4-32 (49)
22 3c3g_A Alpha/beta peptide with 85.2 1.5 5.2E-05 28.8 4.5 28 271-298 2-29 (33)
23 1kd8_A GABH AIV, GCN4 acid bas 85.0 0.79 2.7E-05 30.7 3.2 29 270-298 2-30 (36)
24 2bni_A General control protein 83.3 1.4 4.8E-05 29.2 3.8 29 270-298 2-30 (34)
25 1uo4_A General control protein 82.7 1.5 5.2E-05 29.0 3.8 29 270-298 2-30 (34)
26 1dip_A Delta-sleep-inducing pe 82.2 1.4 4.8E-05 34.0 4.0 22 269-290 22-43 (78)
27 2hy6_A General control protein 81.5 1.8 6.2E-05 28.6 3.8 29 270-298 2-30 (34)
28 2wq1_A General control protein 81.2 2.7 9.4E-05 27.6 4.5 28 271-298 2-29 (33)
29 1am9_A Srebp-1A, protein (ster 79.5 2.3 7.7E-05 32.6 4.4 54 245-298 12-79 (82)
30 2oqq_A Transcription factor HY 77.8 4.5 0.00015 27.9 5.0 24 269-292 17-40 (42)
31 1nkp_B MAX protein, MYC proto- 75.8 3.8 0.00013 31.0 4.8 29 268-296 46-74 (83)
32 1hjb_A Ccaat/enhancer binding 75.2 10 0.00035 29.7 7.2 55 244-298 15-72 (87)
33 1gu4_A CAAT/enhancer binding p 73.8 11 0.00038 28.9 6.9 55 244-298 15-72 (78)
34 1nlw_A MAD protein, MAX dimeri 72.1 7 0.00024 29.8 5.4 30 267-296 45-74 (80)
35 2oa5_A Hypothetical protein BQ 71.8 2.1 7.2E-05 35.2 2.5 25 269-293 8-32 (110)
36 1hlo_A Protein (transcription 71.1 2.7 9.1E-05 31.8 2.9 24 268-291 56-79 (80)
37 1zme_C Proline utilization tra 71.0 4.1 0.00014 29.0 3.7 25 268-292 43-67 (70)
38 1dip_A Delta-sleep-inducing pe 66.8 5.6 0.00019 30.7 3.8 29 270-298 16-44 (78)
39 2r2v_A GCN4 leucine zipper; co 65.6 11 0.00039 24.8 4.5 28 270-297 2-29 (34)
40 1deb_A APC protein, adenomatou 65.5 7.8 0.00027 27.8 4.0 22 272-293 6-27 (54)
41 1p9i_A Cortexillin I/GCN4 hybr 65.0 6.2 0.00021 25.0 3.1 24 272-295 2-25 (31)
42 1fmh_A General control protein 63.0 12 0.00041 24.0 4.2 23 271-293 3-25 (33)
43 3nmd_A CGMP dependent protein 61.0 14 0.00047 28.2 5.0 32 265-296 36-67 (72)
44 2er8_A Regulatory protein Leu3 59.7 4.9 0.00017 28.9 2.3 22 268-289 48-69 (72)
45 1go4_E MAD1 (mitotic arrest de 58.1 13 0.00044 29.9 4.7 26 270-295 13-38 (100)
46 1nkp_A C-MYC, MYC proto-oncoge 57.1 15 0.00051 28.4 4.8 29 267-295 50-78 (88)
47 2wuj_A Septum site-determining 56.7 13 0.00045 26.5 4.1 27 269-295 27-53 (57)
48 2lz1_A Nuclear factor erythroi 54.8 0.24 8.1E-06 39.5 -5.9 24 245-268 63-86 (90)
49 1ci6_A Transcription factor AT 53.4 57 0.002 23.5 7.2 29 270-298 31-59 (63)
50 2dfs_A Myosin-5A; myosin-V, in 53.3 38 0.0013 36.9 8.8 29 268-296 1015-1043(1080)
51 2yy0_A C-MYC-binding protein; 51.8 19 0.00066 25.5 4.2 22 272-293 29-50 (53)
52 2k8f_B Cellular tumor antigen 49.4 6.5 0.00022 26.4 1.3 23 84-106 4-26 (39)
53 3mq7_A Bone marrow stromal ant 48.8 64 0.0022 26.8 7.4 30 268-297 70-99 (121)
54 3he4_B Synzip5; heterodimeric 48.8 21 0.00073 24.4 3.8 23 267-289 8-30 (46)
55 2yy0_A C-MYC-binding protein; 46.8 26 0.00088 24.9 4.2 22 276-297 19-40 (53)
56 3a2a_A Voltage-gated hydrogen 43.6 50 0.0017 24.0 5.3 29 269-297 18-46 (58)
57 1zxa_A CGMP-dependent protein 43.4 40 0.0014 25.2 5.0 31 266-296 22-52 (67)
58 1jnm_A Proto-oncogene C-JUN; B 43.4 86 0.003 22.3 7.8 28 269-296 29-56 (62)
59 2dgc_A Protein (GCN4); basic d 42.4 74 0.0025 23.1 6.3 25 269-293 37-61 (63)
60 2p22_D Hypothetical 12.0 kDa p 41.5 7.6 0.00026 30.1 0.8 10 55-64 1-10 (79)
61 1uii_A Geminin; human, DNA rep 39.5 59 0.002 25.4 5.6 21 271-291 55-75 (83)
62 1gk7_A Vimentin; intermediate 39.1 50 0.0017 22.0 4.5 19 276-294 20-38 (39)
63 1nkp_B MAX protein, MYC proto- 38.7 36 0.0012 25.5 4.2 24 271-294 56-79 (83)
64 3oja_A Leucine-rich immune mol 36.2 1.1E+02 0.0038 29.1 8.3 33 263-295 429-461 (487)
65 3ghg_A Fibrinogen alpha chain; 35.6 46 0.0016 34.0 5.6 54 260-314 101-171 (562)
66 1gd2_E Transcription factor PA 34.5 1.4E+02 0.0049 22.2 6.9 28 269-296 36-63 (70)
67 3fs7_A Parvalbumin, thymic; ca 33.4 47 0.0016 24.2 4.1 29 93-134 77-105 (109)
68 2jws_A GA88; evolution, foldin 32.7 14 0.00048 26.9 0.9 10 95-104 35-44 (56)
69 3q4f_C DNA repair protein XRCC 32.5 35 0.0012 30.3 3.6 23 270-292 162-184 (186)
70 1t2k_D Cyclic-AMP-dependent tr 32.0 83 0.0028 22.3 5.1 27 270-296 30-56 (61)
71 1hwt_C Protein (heme activator 32.0 25 0.00086 25.5 2.3 22 267-288 56-77 (81)
72 3mq9_A Bone marrow stromal ant 31.5 67 0.0023 30.6 5.8 35 260-296 436-470 (471)
73 1a93_B MAX protein, coiled coi 31.4 81 0.0028 20.8 4.3 21 273-293 11-31 (34)
74 1iq3_A Ralbp1-interacting prot 31.2 25 0.00086 27.3 2.3 33 94-139 53-85 (110)
75 2aze_A Transcription factor DP 30.4 1.4E+02 0.0047 25.7 6.9 27 264-290 21-50 (155)
76 3s4r_A Vimentin; alpha-helix, 30.1 48 0.0016 25.9 3.7 25 269-293 56-80 (93)
77 2xv5_A Lamin-A/C; structural p 29.4 1.4E+02 0.0048 22.4 6.1 28 264-291 7-34 (74)
78 3w03_C DNA repair protein XRCC 28.9 48 0.0016 29.3 3.9 23 271-293 154-176 (184)
79 1qjt_A EH1, epidermal growth f 28.7 19 0.00066 27.3 1.2 32 95-139 43-74 (99)
80 2jn6_A Protein CGL2762, transp 28.6 6.4 0.00022 29.6 -1.6 25 274-298 64-88 (97)
81 1t3j_A Mitofusin 1; coiled coi 28.5 85 0.0029 25.0 5.0 34 270-303 48-81 (96)
82 2wg5_A General control protein 27.9 40 0.0014 26.8 3.0 30 270-299 8-37 (109)
83 3ra3_B P2F; coiled coil domain 27.8 36 0.0012 21.1 2.0 16 278-293 2-17 (28)
84 4ati_A MITF, microphthalmia-as 27.6 1.7E+02 0.0057 23.5 6.7 40 245-284 33-89 (118)
85 3coq_A Regulatory protein GAL4 27.4 57 0.0019 23.8 3.6 23 269-291 45-67 (89)
86 1nkp_A C-MYC, MYC proto-oncoge 27.1 79 0.0027 24.2 4.5 24 272-295 62-85 (88)
87 3o0z_A RHO-associated protein 26.3 2.9E+02 0.01 23.9 8.4 46 247-292 68-113 (168)
88 3pjs_K KCSA, voltage-gated pot 26.3 1.4E+02 0.0047 24.8 6.2 28 266-293 135-162 (166)
89 1kd8_A GABH AIV, GCN4 acid bas 25.9 1E+02 0.0035 20.5 4.1 24 269-292 8-31 (36)
90 1wt6_A Myotonin-protein kinase 25.7 2.3E+02 0.008 21.9 7.1 25 269-293 38-62 (81)
91 2pnv_A Small conductance calci 25.5 84 0.0029 21.5 3.8 22 272-293 19-40 (43)
92 3ljm_A Coil Ser L9C; de novo d 25.5 1.2E+02 0.0041 19.1 4.2 24 272-295 4-27 (31)
93 3dtp_E RLC, myosin regulatory 25.4 32 0.0011 28.2 2.1 29 36-64 74-115 (196)
94 1eh2_A EPS15; calcium binding, 25.3 30 0.001 26.9 1.8 33 94-139 45-77 (106)
95 1pyi_A Protein (pyrimidine pat 25.0 53 0.0018 24.5 3.1 21 269-289 48-68 (96)
96 1sv0_A ETS DNA-binding protein 24.8 23 0.00079 27.3 1.0 50 88-138 4-60 (85)
97 2ve7_C Kinetochore protein NUF 24.7 56 0.0019 29.7 3.7 52 244-295 116-174 (250)
98 1uii_A Geminin; human, DNA rep 24.1 1.3E+02 0.0043 23.5 5.1 27 272-298 49-75 (83)
99 2j5u_A MREC protein; bacterial 23.7 66 0.0023 29.1 4.0 26 270-295 37-62 (255)
100 2l5g_A GPS2 protein, G protein 22.5 97 0.0033 20.8 3.5 21 268-288 14-34 (38)
101 1gmj_A ATPase inhibitor; coile 22.5 2.7E+02 0.0094 21.6 9.3 54 240-293 20-75 (84)
102 2dkx_A SAM pointed domain-cont 22.4 27 0.00091 27.5 0.9 50 88-138 18-74 (96)
103 4abm_A Charged multivesicular 22.3 2.1E+02 0.0071 21.6 5.9 22 254-275 41-62 (79)
104 3eff_K Voltage-gated potassium 22.2 1.5E+02 0.0052 23.5 5.6 28 266-293 108-135 (139)
105 2w6b_A RHO guanine nucleotide 22.1 1.4E+02 0.0047 21.7 4.5 26 271-296 12-37 (56)
106 2wvr_A Geminin; DNA replicatio 21.7 1.3E+02 0.0045 27.0 5.4 35 268-302 121-155 (209)
107 2jee_A YIIU; FTSZ, septum, coi 21.7 1.2E+02 0.004 23.5 4.4 11 281-291 53-63 (81)
108 1nlw_A MAD protein, MAX dimeri 21.7 1.9E+02 0.0064 21.7 5.6 22 272-293 57-78 (80)
109 3v86_A De novo design helix; c 21.5 1.1E+02 0.0038 18.7 3.4 23 270-292 1-23 (27)
110 3hnw_A Uncharacterized protein 20.7 3.6E+02 0.012 22.2 8.9 29 265-293 99-127 (138)
111 3ni0_A Bone marrow stromal ant 20.3 1.5E+02 0.0052 23.7 4.9 28 265-292 56-83 (99)
112 2qb0_B Telsam domain - lysozym 20.2 78 0.0027 28.3 3.7 50 88-137 6-61 (241)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.52 E-value=2e-14 Score=105.39 Aligned_cols=50 Identities=38% Similarity=0.583 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 248 Kr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
|+++||++||+||++||.|||+|+++||.+|..|+.||..|..+++.+..
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999986653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.27 E-value=1e-11 Score=92.86 Aligned_cols=51 Identities=29% Similarity=0.504 Sum_probs=47.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
|||++|+++||+||++||.||++|+.+||.+|..|+.+|..|..+++.+..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999886643
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.21 E-value=3e-11 Score=89.55 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 248 Kr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
||++|+++||+||++||.|||+|+.+||.+|..|+.+|..|..+++.++.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999987753
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.16 E-value=5.9e-11 Score=89.10 Aligned_cols=52 Identities=31% Similarity=0.351 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 246 VERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 246 ~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.++..++..+||+||++||.||++|+.+||.+|..|+.+|..|..+++.|+.
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456999999999999999999999999999999999999986653
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.11 E-value=1.8e-10 Score=85.70 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=45.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 248 Kr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
|+++|..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999987653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.75 E-value=1.4e-08 Score=75.98 Aligned_cols=50 Identities=28% Similarity=0.445 Sum_probs=41.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 248 Kr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
|+.+++.+||.||+|||.||++++.+||.++..|+.+|..|+.+++-+..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999999999876643
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.45 E-value=4.3e-07 Score=70.87 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
+|+..++-..|..||.+||++||.++++...+++.++..|+.||..|+.+++.|..
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555678999999999999999999999999999999999999987753
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.37 E-value=1.2e-06 Score=69.72 Aligned_cols=55 Identities=27% Similarity=0.345 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+|+..++-..|..||.++|++||.++++...+++.++..|+.||..|+.+++.|.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677999999999999999999999999999999999999988764
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.33 E-value=1.8e-06 Score=66.08 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=42.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 250 ~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.+|...||.|++..|.||++|+.+||.+|..|+.+|..|..+++.|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999888887665
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.19 E-value=2.6e-07 Score=76.08 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 242 ~e~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.+....|.+||..|||.+|+.||.||.+.+++||.++..|..+.+.|..+++
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~ 82 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999766655555555444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.75 E-value=0.00019 Score=57.38 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
....|..||-.|||..|+.||.||..-..+||.++..|..+.+.|+++++-+
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999998888888888888776644
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.95 E-value=0.0038 Score=49.83 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQAYTNELEN 276 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKkay~~eLE~ 276 (315)
....|..||..|||.+|++||+||.+.+++|+.
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 457888999999999999999999998888764
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=95.54 E-value=0.019 Score=39.75 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
|+|+.+||.+++.|+..|.+|..++..+..
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999888876643
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=91.74 E-value=0.61 Score=34.17 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (315)
Q Consensus 253 ~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~ 291 (315)
.-|||.++++||+|=|..++-...-.+.-.+||++|+--
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l 44 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 357999999999998877776666555666788887643
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=90.49 E-value=0.33 Score=32.11 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.+|..|-.+|..|..+++-++.+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 47899999999999999999999866644
No 16
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=90.22 E-value=0.31 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+..||.||+.|-.+|..|..+++-++.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5689999999999999999999866654
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.66 E-value=1.6 Score=35.45 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
-+.+.+||.+|..|..||+.|+++.+.-+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998554
No 18
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=87.77 E-value=0.059 Score=42.96 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021244 244 KTVERRQKRMIKNRESAARSRARKQA 269 (315)
Q Consensus 244 ~~~eKr~rR~iKNReSA~rSR~RKka 269 (315)
....|..||.-|||.+|++||+||..
T Consensus 62 l~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 62 LALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999854
No 19
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.58 E-value=0.8 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.+|+.|-.+|..|..+++-|+.+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47899999999999999999999877654
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.73 E-value=0.85 Score=30.14 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.||+.|-.+|..|..+++-++.+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 47899999999999999999999866543
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.47 E-value=1.1 Score=31.09 Aligned_cols=29 Identities=41% Similarity=0.518 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.+|..|+.||+.|++++---+++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdl 32 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDL 32 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHH
Confidence 46789999999999999998876433333
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.23 E-value=1.5 Score=28.79 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+..||.||+.|-.+|..|..+++-++.+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5789999999999999999999866543
No 23
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=84.99 E-value=0.79 Score=30.67 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.||+.|..+|..|..+++-|+.+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35789999999999999999998866654
No 24
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.34 E-value=1.4 Score=29.17 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.||+.|-.+|..|..+++-++.+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46789999999999999999998866543
No 25
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=82.72 E-value=1.5 Score=28.98 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.||+.|-.+|..|..++.-++.+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999998766544
No 26
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=82.16 E-value=1.4 Score=34.02 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRK 290 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~ 290 (315)
+.|.+|+.++.+||.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666654
No 27
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=81.47 E-value=1.8 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+..||.+|+.|-.+|..|..+++-++.+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999998766543
No 28
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.22 E-value=2.7 Score=27.57 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+..||.||+.|-.+|..|..+++-++.+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5789999999999999999998766543
No 29
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=79.49 E-value=2.3 Score=32.56 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 245 TVERRQKRMIKNRESAARSR--------------ARKQAYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR--------------~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
..||+.|..|..+-.+-++- .+--.|+..|+.++..|+++|..|+.+++-...+
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35666665666655543332 2335899999999999999999999988754433
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.82 E-value=4.5 Score=27.92 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
....+||++|+.|+.||.-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345788999999999998887654
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=75.83 E-value=3.8 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
-.||..|+.++..|+.+...|+++++.|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999888888888888888877553
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.23 E-value=10 Score=29.70 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=35.9
Q ss_pred hHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 244 KTVERRQKRMI---KNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 244 ~~~eKr~rR~i---KNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+--+||.|==+ |-|+.++.--.--+..+.+||.+-..|+.+...|..++..++.+
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555333 33333333333345567899999999999999999999877654
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.75 E-value=11 Score=28.90 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=37.5
Q ss_pred hHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 244 KTVERRQKRMI---KNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 244 ~~~eKr~rR~i---KNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
+--+||.|==+ |-|+.++.--.--+..+.+|+.+-..|+.+...|..++..|+.+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555333 34444433334445668899999999999999999999887754
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.09 E-value=7 Score=29.83 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 267 KQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
-.+||..|+.+...|+.|+..|+++++.|+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999887654
No 35
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=71.84 E-value=2.1 Score=35.20 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.-+++|+.++..|+-||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999874
No 36
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.15 E-value=2.7 Score=31.79 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 268 QAYTNELENKVSRLEEENERLRKQ 291 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~ 291 (315)
-.||..|+.++..|+.++..|+++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999998876
No 37
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=70.96 E-value=4.1 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 268 QAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
..|++.||.++..|+.++..|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999887755
No 38
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.82 E-value=5.6 Score=30.67 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
-++.|.+++..|++.|.+|..++.+|+.+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998765
No 39
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=65.61 E-value=11 Score=24.81 Aligned_cols=28 Identities=4% Similarity=-0.003 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
.+..||.||+.|-.+|..|..+++-++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3678999999999999999988875553
No 40
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=65.48 E-value=7.8 Score=27.84 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 272 NELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+.|-.+|+.|+.||..|+++++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 5678899999999999999986
No 41
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=64.96 E-value=6.2 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+.|..-+..|+.||.+|+.++|.+
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888999999999888744
No 42
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=62.96 E-value=12 Score=23.99 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+..||.+|.+.+.||-+|..++.
T Consensus 3 vaqlekevaqaeaenyqleqeva 25 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVA 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 46799999999999999998876
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.97 E-value=14 Score=28.23 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 265 ARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+.|.+.+.+||.++...+.++.+|+.++.-++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667799999999999999999999986443
No 44
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=59.67 E-value=4.9 Score=28.91 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 268 QAYTNELENKVSRLEEENERLR 289 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~ 289 (315)
+.|+.+||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999888776654
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.13 E-value=13 Score=29.94 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
-+..|..+++.|+.||.+|+++++.|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888777655
No 46
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.10 E-value=15 Score=28.37 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 267 KQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
--+||..|+.+...|..+...|+++++.|
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L 78 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999988777666655555555433
No 47
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.69 E-value=13 Score=26.55 Aligned_cols=27 Identities=4% Similarity=0.124 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+|++.+...+..|..||..|+.+++-+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888999998888643
No 48
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.79 E-value=0.24 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 021244 245 TVERRQKRMIKNRESAARSRARKQ 268 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR~RKk 268 (315)
...+..||.-|||.+|++||+||.
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHhhhhHHHHHHcchhhc
Confidence 456778888999999999999984
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.38 E-value=57 Score=23.54 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
-+++|+.+...|+.+...|+.++..|+.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887777654
No 50
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.27 E-value=38 Score=36.95 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+...++|+.+|+.|++||..|+++++-+.
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888899999999999998876554
No 51
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.79 E-value=19 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 272 NELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.+|..++..|++++++|+.+++
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666553
No 52
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=49.37 E-value=6.5 Score=26.37 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=19.5
Q ss_pred cccccccchhhccccHHHHHHHH
Q 021244 84 RQASLSLTSALSKKTVDEVWRDI 106 (315)
Q Consensus 84 rQgSltLp~~ls~KTVDEVWrdI 106 (315)
.|..+++-++||+.|..+.|+-+
T Consensus 4 ~qsd~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 4 PQSDPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp SCCCSSCCCCCSCHHHHHHHHTC
T ss_pred cccccccCCCccHHHHHHHHHhC
Confidence 35568888999999999999965
No 53
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.83 E-value=64 Score=26.77 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
++.+++|+.++..|..+.+....++|-++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344888888888777777666666665543
No 54
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=48.78 E-value=21 Score=24.36 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 267 KQAYTNELENKVSRLEEENERLR 289 (315)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~ 289 (315)
-|.|+++||++...|+.-.+.|+
T Consensus 8 lknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHH
Confidence 35799999987776665555543
No 55
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.79 E-value=26 Score=24.88 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021244 276 NKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 276 ~kv~~Le~EN~~L~~~~el~~~ 297 (315)
..|..|+.||..|+.+++.|..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666655443
No 56
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=43.64 E-value=50 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFLI 297 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~~ 297 (315)
+--..|-.+|..|+..+.+...+++-|..
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777788888877777777765543
No 57
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.44 E-value=40 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.|.+.+.+||..+..-..|+.+|+.++.-.+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999998885443
No 58
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.37 E-value=86 Score=22.28 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.-+.+|+.+...|..+...|..++..|+
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888889999998888887654
No 59
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.41 E-value=74 Score=23.07 Aligned_cols=25 Identities=36% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.-+..|+.+...|+.+...|+.++.
T Consensus 37 ~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 37 DKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999988763
No 60
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=41.50 E-value=7.6 Score=30.14 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=9.3
Q ss_pred ccHHHHHhhh
Q 021244 55 MNLDELLKNV 64 (315)
Q Consensus 55 MNmDElLknI 64 (315)
||||++|++|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 8999999998
No 61
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.50 E-value=59 Score=25.36 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENERLRKQ 291 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~ 291 (315)
++.|+.+++.|+++|.+|+.-
T Consensus 55 ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 62
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=39.14 E-value=50 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 021244 276 NKVSRLEEENERLRKQKVG 294 (315)
Q Consensus 276 ~kv~~Le~EN~~L~~~~el 294 (315)
.+|..||.+|..|..++..
T Consensus 20 dkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4799999999999988753
No 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.73 E-value=36 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021244 271 TNELENKVSRLEEENERLRKQKVG 294 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el 294 (315)
...|+.++..|+.+|..|+.++.-
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999888853
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.23 E-value=1.1e+02 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 263 SRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 263 SR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
-|.|.+.+++....+++.|++||++|+++++-+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 455566777777778888888888888876644
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.61 E-value=46 Score=33.96 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------hhhhhhhhhhhhccccccc
Q 021244 260 AARSRARKQAYTNELENKVSRLEEENERLRKQKVGF-----------------LILFMLFCIAVADLVVLLF 314 (315)
Q Consensus 260 A~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~-----------------~~l~~~~~~~~~~~~vl~~ 314 (315)
+......+.+|.++||.++..|+.+...-...+..| =+++..+|.--|. |+|+|
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCs-r~~~~ 171 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCS-RALAR 171 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBS-CCCCC
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-chhee
Confidence 445566778888899998888887766533333333 2255577777664 34444
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.48 E-value=1.4e+02 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 269 AYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
.-+.+||.....|..||..|+.+++-+.
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888999999988887554
No 67
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=33.43 E-value=47 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=18.3
Q ss_pred hhccccHHHHHHHHhhccCCCCCCccccccccccchHHHHHH
Q 021244 93 ALSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLV 134 (315)
Q Consensus 93 ~ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TLGEMTLEdFLv 134 (315)
.++...++++|+.+-..+ =|.++++||+.
T Consensus 77 ~~~~~~~~~~~~~~D~~~-------------dg~i~~~EF~~ 105 (109)
T 3fs7_A 77 VLTSAETKAFLAAGDTDG-------------DGKIGVEEFQS 105 (109)
T ss_dssp CCCHHHHHHHHHHHCTTC-------------SSSBCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCC-------------CCcCcHHHHHH
Confidence 345556777777663321 16789999974
No 68
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=32.71 E-value=14 Score=26.93 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=8.7
Q ss_pred ccccHHHHHH
Q 021244 95 SKKTVDEVWR 104 (315)
Q Consensus 95 s~KTVDEVWr 104 (315)
-.||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5799999995
No 69
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=32.52 E-value=35 Score=30.29 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 270 YTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
.+.+|+.+...|++||++|.++-
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888887753
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.03 E-value=83 Score=22.26 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
-+..|+.+...|..+...|+.++..|+
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888888877776554
No 71
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.98 E-value=25 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 267 KQAYTNELENKVSRLEEENERL 288 (315)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L 288 (315)
+..|++.||.+|..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999998766655
No 72
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.52 E-value=67 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 260 AARSRARKQAYTNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 260 A~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+..|..-| .++|||.+|..|+.+.+.++.+++-++
T Consensus 436 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 436 AEKAQGQK--KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 73
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.42 E-value=81 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 273 ELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 273 eLE~kv~~Le~EN~~L~~~~e 293 (315)
.....+..|+.+|..|..++.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHH
Confidence 344556677777777777663
No 74
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=31.24 E-value=25 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=23.6
Q ss_pred hccccHHHHHHHHhhccCCCCCCccccccccccchHHHHHHHhccc
Q 021244 94 LSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKAGVV 139 (315)
Q Consensus 94 ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGVV 139 (315)
++...++++|+++-..+ -|.++++||+.--..+
T Consensus 53 l~~~el~~i~~~~D~d~-------------dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 53 LSIPELSYIWELSDADC-------------DGALTLPEFCAAFHLI 85 (110)
T ss_dssp CSSCCHHHHHHHHCSSS-------------CSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC-------------CCcCcHHHHHHHHHHH
Confidence 45678999999873332 1789999998755443
No 75
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.43 E-value=1.4e+02 Score=25.75 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 021244 264 RARKQAYTNELENKVSRL---EEENERLRK 290 (315)
Q Consensus 264 R~RKkay~~eLE~kv~~L---e~EN~~L~~ 290 (315)
-++|++|+++|..+...+ -+.|.++..
T Consensus 21 I~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999876544 445555543
No 76
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.14 E-value=48 Score=25.85 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.|+.+|-.+|..+..++.+|.-++.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554
No 77
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.41 E-value=1.4e+02 Score=22.40 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 264 RARKQAYTNELENKVSRLEEENERLRKQ 291 (315)
Q Consensus 264 R~RKkay~~eLE~kv~~Le~EN~~L~~~ 291 (315)
|...+.-+..||.++..++.+.+...++
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~E 34 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444433
No 78
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.91 E-value=48 Score=29.26 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 271 TNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+.+|..++..|+++|++|+.+..
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888877653
No 79
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=28.70 E-value=19 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=23.0
Q ss_pred ccccHHHHHHHHhhccCCCCCCccccccccccchHHHHHHHhccc
Q 021244 95 SKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKAGVV 139 (315)
Q Consensus 95 s~KTVDEVWrdI~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGVV 139 (315)
+..+++++|+++-..+ -|.++.+||+.--..+
T Consensus 43 ~~~~l~~i~~~~D~d~-------------dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 43 PDLILGKIWDLADTDG-------------KGVLSKQEFFVALRLV 74 (99)
T ss_dssp CHHHHHHHHHHHCCSS-------------SSSCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCC-------------CCcCCHHHHHHHHHHH
Confidence 4668999999873322 1789999998765544
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.59 E-value=6.4 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 274 LENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 274 LE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
.+.++..|+.||.+|+.+++++...
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877644
No 81
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.47 E-value=85 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLILFMLFC 303 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l~~~~~ 303 (315)
...+||.+++.|+.+...|..-..-.+.|+.+.+
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3355666666666666665554444444444333
No 82
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.95 E-value=40 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGFLILF 299 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~~~l~ 299 (315)
.+..|+.+.+.|+++...|+++++.++..+
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356788888888999999999888776543
No 83
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.79 E-value=36 Score=21.09 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021244 278 VSRLEEENERLRKQKV 293 (315)
Q Consensus 278 v~~Le~EN~~L~~~~e 293 (315)
+..|++.|.+|++++.
T Consensus 2 irrlkqknarlkqeia 17 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIA 17 (28)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHH
Confidence 3445555666655554
No 84
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=27.57 E-value=1.7e+02 Score=23.55 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 021244 245 TVERRQKRMIKNRESAARSR-----------------ARKQAYTNELENKVSRLEEE 284 (315)
Q Consensus 245 ~~eKr~rR~iKNReSA~rSR-----------------~RKkay~~eLE~kv~~Le~E 284 (315)
..||+.|-.|..+-.+-++= .+--+|+..|..++..|+++
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776664431 12347888888777766654
No 85
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.38 E-value=57 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQ 291 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~ 291 (315)
.|+..||.++..||.....|...
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 48889999999999888777543
No 86
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.07 E-value=79 Score=24.20 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
..|+.++..|+.+|..|+.+++-|
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677888888888888654
No 87
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.32 E-value=2.9e+02 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 247 eKr~rR~iKNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
++....+..--+.=++.|.+-.+.+.+|+.++..|+.|..+++...
T Consensus 68 eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556677888888888899988888888888876543
No 88
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=26.26 E-value=1.4e+02 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+.++....++.+++.|.++.++|+++++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566777778888888888877664
No 89
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.92 E-value=1e+02 Score=20.46 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
..+++|..+...|+.|..+|+..+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 346777777777777777777654
No 90
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.67 E-value=2.3e+02 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.-...++.++...+..|..|..+++
T Consensus 38 ~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555544443
No 91
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.54 E-value=84 Score=21.52 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 272 NELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~e 293 (315)
++||.++..||.....|...++
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888877777777665
No 92
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=25.48 E-value=1.2e+02 Score=19.12 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
+-||.+-..|+...+.|.+++|-+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777643
No 93
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=25.35 E-value=32 Score=28.22 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=17.2
Q ss_pred hhhhHHhhhhCCCCCCC-------------CCccHHHHHhhh
Q 021244 36 LTLDEVQNQLGDLGKPL-------------SSMNLDELLKNV 64 (315)
Q Consensus 36 LTldE~q~~lg~~GK~f-------------gSMNmDElLknI 64 (315)
+|++||..-|-.+|-++ |.++.+||+.-+
T Consensus 74 i~~~el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~~~ 115 (196)
T 3dtp_E 74 ISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIF 115 (196)
T ss_dssp CCHHHHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHHHH
Confidence 56666666655555443 566667766544
No 94
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.28 E-value=30 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=23.1
Q ss_pred hccccHHHHHHHHhhccCCCCCCccccccccccchHHHHHHHhccc
Q 021244 94 LSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKAGVV 139 (315)
Q Consensus 94 ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TLGEMTLEdFLvrAGVV 139 (315)
++..+++++|+.+-..++ |.++.+||++---.+
T Consensus 45 l~~~el~~i~~~~D~d~d-------------G~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 45 LPVDILGRVWELSDIDHD-------------GMLDRDEFAVAMFLV 77 (106)
T ss_dssp CCHHHHHHHHHHHCSSCS-------------SBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCC-------------CcCcHHHHHHHHHHH
Confidence 345689999998733322 789999998765444
No 95
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.03 E-value=53 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 269 AYTNELENKVSRLEEENERLR 289 (315)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~ 289 (315)
.|+..||.++..||....++.
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 488999999999887666553
No 96
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=24.84 E-value=23 Score=27.32 Aligned_cols=50 Identities=18% Similarity=-0.029 Sum_probs=31.5
Q ss_pred cccchhhccccHHHHHHHHhh---ccCCCCCCccccc----cccccchHHHHHHHhcc
Q 021244 88 LSLTSALSKKTVDEVWRDIQQ---SKSSGEKKPRDRQ----ATLGEMTLEDFLVKAGV 138 (315)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~---~~~~~~~~~~~rQ----~TLGEMTLEdFLvrAGV 138 (315)
+.+|..-..=|.+.|+.=|.- +-+...... .+- ..|=.||.|||+.+++.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~-~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLDF-DLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCG-GGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCCh-hhCCCCHHHHHcCCHHHHHHHcCC
Confidence 456777777788888876653 222222211 222 34568999999999984
No 97
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.66 E-value=56 Score=29.68 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=28.8
Q ss_pred hHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 244 KTVERRQKRMI-------KNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 244 ~~~eKr~rR~i-------KNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
++..+|.+|.+ +=||+...--.......+++..+++.|.+||++++.+++-+
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555553 34444444444444445566667777777777776666543
No 98
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.09 E-value=1.3e+02 Score=23.48 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021244 272 NELENKVSRLEEENERLRKQKVGFLIL 298 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~el~~~l 298 (315)
..|-.+|..|++|+..|+++++.++.+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999988765
No 99
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.73 E-value=66 Score=29.08 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021244 270 YTNELENKVSRLEEENERLRKQKVGF 295 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~el~ 295 (315)
.+.....++..|+.||++|++.+.+.
T Consensus 37 ~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 37 ELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444566788999999999887643
No 100
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.52 E-value=97 Score=20.80 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021244 268 QAYTNELENKVSRLEEENERL 288 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L 288 (315)
|+.+..|+.++..|++|-.+|
T Consensus 14 keQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665554
No 101
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.51 E-value=2.7e+02 Score=21.58 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 240 DMIEKTVERRQKRMIKNRESAARSRARKQA--YTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 240 ~~~e~~~eKr~rR~iKNReSA~rSR~RKka--y~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
+..-+.+.-+.-+-++.++..+-...|++- -+..-..++..|+.+..++++.+.
T Consensus 20 gaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 20 GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444455555554455552 233333466666666666666554
No 102
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.39 E-value=27 Score=27.52 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=28.8
Q ss_pred cccchhhccccHHHHHHHHhh---ccCCCCCCcccccc----ccccchHHHHHHHhcc
Q 021244 88 LSLTSALSKKTVDEVWRDIQQ---SKSSGEKKPRDRQA----TLGEMTLEDFLVKAGV 138 (315)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~---~~~~~~~~~~~rQ~----TLGEMTLEdFLvrAGV 138 (315)
+.+|..-..=|.+.|+.=|.- +-+..... ..+.+ .|=.||.|||+.||+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~f~m~G~~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMG-KAFQELAGKELCAMSEEQFRQRSPL 74 (96)
T ss_dssp TTCCSCGGGCCSSTHHHHHHHHHHHTTCCCCH-HHHSSCCHHHHHHSCHHHHHHHCSS
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHhcCCCCCC-cccCCCCHHHHHhCCHHHHHHHcCc
Confidence 445666666666777664442 21222121 13333 4558999999999974
No 103
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=22.27 E-value=2.1e+02 Score=21.62 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 021244 254 IKNRESAARSRARKQAYTNELE 275 (315)
Q Consensus 254 iKNReSA~rSR~RKkay~~eLE 275 (315)
-+|+..|..+=+|||.|=..|+
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHH
Confidence 4678888888888888755554
No 104
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=22.24 E-value=1.5e+02 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 266 RKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
.+++..+.++++++.|.++.++|+++.+
T Consensus 108 ~~~~~~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 108 SEKAAEEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777777776654
No 105
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.08 E-value=1.4e+02 Score=21.65 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021244 271 TNELENKVSRLEEENERLRKQKVGFL 296 (315)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~~~el~~ 296 (315)
+-.|-.+|..|++||.+|++-+|-+.
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788899999999887776553
No 106
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.75 E-value=1.3e+02 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021244 268 QAYTNELENKVSRLEEENERLRKQKVGFLILFMLF 302 (315)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~~~el~~~l~~~~ 302 (315)
...++.|+.+++.|++||.+|+.-.+-.+.+-+..
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi 155 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELI 155 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 107
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.74 E-value=1.2e+02 Score=23.52 Aligned_cols=11 Identities=55% Similarity=0.833 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 021244 281 LEEENERLRKQ 291 (315)
Q Consensus 281 Le~EN~~L~~~ 291 (315)
|..||++|+.+
T Consensus 53 L~~en~qLk~E 63 (81)
T 2jee_A 53 LERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 108
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.66 E-value=1.9e+02 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021244 272 NELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~~~e 293 (315)
..|+.+...|+.+|..|+++++
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677888888888888775
No 109
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.52 E-value=1.1e+02 Score=18.72 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021244 270 YTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
|+-.|..+|-.|+-|...|+.++
T Consensus 1 yvyqlkdevgelkgevralkdev 23 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHH
Confidence 34456666666666666666555
No 110
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.71 E-value=3.6e+02 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 265 ARKQAYTNELENKVSRLEEENERLRKQKV 293 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~~~e 293 (315)
...+..+++++.++..|++++..|.+++.
T Consensus 99 ~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 99 IAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666665543
No 111
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.31 E-value=1.5e+02 Score=23.69 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021244 265 ARKQAYTNELENKVSRLEEENERLRKQK 292 (315)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~~~ 292 (315)
.++|+.-.+-..+|+.|+.|...|..++
T Consensus 56 ~kekaq~q~qq~~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 56 EKKVSQALEQQARIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333334444444444444444
No 112
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=20.19 E-value=78 Score=28.30 Aligned_cols=50 Identities=18% Similarity=-0.017 Sum_probs=32.0
Q ss_pred cccchhhccccHHHHHHHHhhc---cCCCCCC---ccccccccccchHHHHHHHhc
Q 021244 88 LSLTSALSKKTVDEVWRDIQQS---KSSGEKK---PRDRQATLGEMTLEDFLVKAG 137 (315)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~~---~~~~~~~---~~~rQ~TLGEMTLEdFLvrAG 137 (315)
+.+|..-..=|.+.||.=|+-- -+..+.. ..---..|-.||+|||+.|++
T Consensus 6 ~~~p~dP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~m~~~~F~~~~p 61 (241)
T 2qb0_B 6 AHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSP 61 (241)
T ss_dssp GGGGSCGGGCCHHHHHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCHHhcCCChHHHHHcCHHHHHhhcC
Confidence 4567777788999999876632 1111111 111123588999999999986
Done!