Query 021245
Match_columns 315
No_of_seqs 224 out of 1733
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:44:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.2E-31 2.6E-36 278.9 24.8 198 1-201 638-854 (854)
2 PRK01759 glnD PII uridylyl-tra 100.0 5E-32 1.1E-36 281.7 20.7 164 117-315 666-830 (854)
3 PRK05007 PII uridylyl-transfer 100.0 2.2E-31 4.7E-36 277.7 25.4 200 1-202 661-880 (884)
4 PRK00275 glnD PII uridylyl-tra 100.0 4.3E-31 9.2E-36 275.6 26.3 203 1-204 660-889 (895)
5 PRK05007 PII uridylyl-transfer 100.0 8.7E-32 1.9E-36 280.7 21.1 165 117-315 690-855 (884)
6 PRK04374 PII uridylyl-transfer 100.0 1.2E-29 2.6E-34 263.3 26.5 199 1-201 649-867 (869)
7 PRK03059 PII uridylyl-transfer 100.0 2E-29 4.3E-34 262.1 24.9 196 1-201 637-855 (856)
8 PRK05092 PII uridylyl-transfer 100.0 5.1E-29 1.1E-33 262.0 26.2 203 1-204 690-918 (931)
9 TIGR01693 UTase_glnD [Protein- 100.0 4E-29 8.7E-34 261.1 25.3 198 1-200 627-849 (850)
10 COG2844 GlnD UTP:GlnB (protein 100.0 7.7E-29 1.7E-33 246.5 16.7 161 121-315 677-838 (867)
11 TIGR01693 UTase_glnD [Protein- 100.0 2.8E-28 6E-33 254.8 21.1 167 119-315 659-826 (850)
12 PRK00275 glnD PII uridylyl-tra 100.0 2.5E-27 5.4E-32 247.5 22.3 158 126-315 702-861 (895)
13 PRK04374 PII uridylyl-transfer 100.0 1.8E-27 3.9E-32 247.2 21.0 158 123-315 685-843 (869)
14 PRK03059 PII uridylyl-transfer 100.0 5.9E-27 1.3E-31 243.7 21.9 163 120-315 670-833 (856)
15 COG2844 GlnD UTP:GlnB (protein 100.0 1.2E-26 2.6E-31 230.9 23.0 200 1-202 644-863 (867)
16 PRK03381 PII uridylyl-transfer 99.9 1.3E-26 2.8E-31 239.1 21.4 164 119-315 591-754 (774)
17 PRK05092 PII uridylyl-transfer 99.9 2.4E-26 5.3E-31 241.8 22.4 167 119-315 723-890 (931)
18 PRK03381 PII uridylyl-transfer 99.9 1E-25 2.2E-30 232.4 24.0 173 21-197 586-773 (774)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.1E-20 2.3E-25 138.7 6.5 48 268-315 1-48 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 1.2E-19 2.6E-24 132.2 6.3 48 268-315 1-48 (72)
21 cd04897 ACT_ACR_3 ACT domain-c 99.8 5.7E-18 1.2E-22 124.3 11.2 74 128-202 1-74 (75)
22 cd04896 ACT_ACR-like_3 ACT dom 99.8 1.7E-18 3.7E-23 127.0 6.3 46 269-314 1-48 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 2.8E-17 6.1E-22 119.7 10.5 69 128-197 1-69 (72)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 1.7E-16 3.6E-21 116.5 10.6 72 129-202 1-74 (75)
25 cd04925 ACT_ACR_2 ACT domain-c 99.7 4.8E-16 1E-20 114.7 11.1 73 129-202 1-74 (74)
26 cd04900 ACT_UUR-like_1 ACT dom 99.7 9.9E-16 2.1E-20 112.7 10.6 71 129-200 2-73 (73)
27 cd04927 ACT_ACR-like_2 Second 99.6 5.5E-15 1.2E-19 109.6 11.0 71 130-202 2-73 (76)
28 PRK11589 gcvR glycine cleavage 99.6 4E-14 8.7E-19 122.6 14.8 150 32-200 5-166 (190)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.5E-14 3.2E-19 106.4 9.8 69 36-104 2-71 (73)
30 cd04925 ACT_ACR_2 ACT domain-c 99.5 6.3E-14 1.4E-18 103.3 10.3 69 36-104 1-70 (74)
31 PRK00227 glnD PII uridylyl-tra 99.5 2E-13 4.2E-18 138.8 15.8 127 129-315 547-674 (693)
32 PRK11589 gcvR glycine cleavage 99.5 1.8E-13 4E-18 118.5 12.5 137 125-314 5-143 (190)
33 cd04927 ACT_ACR-like_2 Second 99.5 2.5E-13 5.5E-18 100.6 10.5 68 37-105 2-70 (76)
34 cd04928 ACT_TyrKc Uncharacteri 99.5 3.5E-13 7.6E-18 97.0 9.7 65 36-102 2-67 (68)
35 cd04928 ACT_TyrKc Uncharacteri 99.5 8.2E-13 1.8E-17 95.1 9.9 65 129-200 2-67 (68)
36 cd04926 ACT_ACR_4 C-terminal 99.4 3.1E-12 6.7E-17 93.8 10.2 67 129-197 2-68 (72)
37 cd04926 ACT_ACR_4 C-terminal 99.4 6.7E-12 1.5E-16 92.0 10.5 69 36-105 2-70 (72)
38 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 1.5E-11 3.3E-16 89.1 10.3 70 129-200 1-70 (70)
39 PRK00227 glnD PII uridylyl-tra 99.3 3E-11 6.4E-16 123.0 15.8 145 36-202 547-692 (693)
40 COG2716 GcvR Glycine cleavage 99.3 4E-11 8.7E-16 100.0 11.2 154 33-199 3-162 (176)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 2.8E-10 6E-15 82.4 9.9 68 36-104 1-68 (70)
42 COG2716 GcvR Glycine cleavage 99.2 8.7E-11 1.9E-15 98.0 7.1 126 126-304 3-128 (176)
43 cd04873 ACT_UUR-ACR-like ACT d 99.0 3.2E-09 7E-14 76.4 10.3 69 129-199 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 2.3E-08 5E-13 71.9 9.7 67 37-104 2-68 (70)
45 PF13740 ACT_6: ACT domain; PD 98.7 1.5E-07 3.3E-12 69.5 10.3 64 128-199 2-65 (76)
46 cd04894 ACT_ACR-like_1 ACT dom 98.7 7.9E-08 1.7E-12 66.6 6.7 49 36-84 1-49 (69)
47 PF13740 ACT_6: ACT domain; PD 98.6 3.4E-07 7.3E-12 67.7 9.8 63 35-104 2-64 (76)
48 cd04893 ACT_GcvR_1 ACT domains 98.5 6.7E-07 1.5E-11 66.2 8.7 47 36-82 2-48 (77)
49 PF01842 ACT: ACT domain; Int 98.5 1.7E-06 3.7E-11 61.2 10.0 61 129-198 1-63 (66)
50 cd04870 ACT_PSP_1 CT domains f 98.5 8.9E-07 1.9E-11 65.1 8.0 64 130-200 1-64 (75)
51 COG4747 ACT domain-containing 98.5 2.2E-06 4.8E-11 67.3 10.3 114 36-176 4-118 (142)
52 cd04893 ACT_GcvR_1 ACT domains 98.4 2.2E-06 4.7E-11 63.5 9.2 62 129-198 2-63 (77)
53 PF01842 ACT: ACT domain; Int 98.4 3E-06 6.5E-11 59.9 8.6 48 36-83 1-50 (66)
54 cd04870 ACT_PSP_1 CT domains f 98.3 2.7E-06 5.7E-11 62.6 7.9 50 37-86 1-50 (75)
55 cd04872 ACT_1ZPV ACT domain pr 98.2 6.9E-06 1.5E-10 62.3 7.2 66 129-200 2-67 (88)
56 cd04869 ACT_GcvR_2 ACT domains 98.1 2.5E-05 5.4E-10 57.9 8.7 62 130-198 1-68 (81)
57 PRK00194 hypothetical protein; 98.1 1.7E-05 3.7E-10 60.3 7.7 65 128-198 3-67 (90)
58 cd04869 ACT_GcvR_2 ACT domains 98.1 3.3E-05 7.3E-10 57.2 8.7 48 37-84 1-54 (81)
59 cd04872 ACT_1ZPV ACT domain pr 98.0 1.6E-05 3.6E-10 60.2 7.0 49 36-84 2-50 (88)
60 cd04875 ACT_F4HF-DF N-terminal 98.0 3.9E-05 8.6E-10 56.0 8.5 63 130-198 1-65 (74)
61 TIGR00655 PurU formyltetrahydr 98.0 0.0002 4.2E-09 66.1 14.9 115 37-162 2-118 (280)
62 PRK00194 hypothetical protein; 98.0 2.6E-05 5.7E-10 59.2 7.5 48 35-82 3-50 (90)
63 cd04875 ACT_F4HF-DF N-terminal 98.0 5.9E-05 1.3E-09 55.1 8.7 34 37-70 1-34 (74)
64 PRK13010 purU formyltetrahydro 98.0 0.00017 3.8E-09 66.7 13.5 49 34-82 8-58 (289)
65 cd04894 ACT_ACR-like_1 ACT dom 97.9 6.6E-05 1.4E-09 52.3 6.4 67 129-199 1-67 (69)
66 PF13291 ACT_4: ACT domain; PD 97.8 0.00028 6E-09 52.3 10.0 64 35-104 6-71 (80)
67 PF13291 ACT_4: ACT domain; PD 97.8 0.0003 6.4E-09 52.1 9.3 62 128-196 6-69 (80)
68 PRK06027 purU formyltetrahydro 97.7 0.0009 1.9E-08 62.0 13.9 49 34-82 5-55 (286)
69 PRK13011 formyltetrahydrofolat 97.7 0.0016 3.6E-08 60.2 15.1 51 34-84 6-58 (286)
70 COG4747 ACT domain-containing 97.7 0.00086 1.9E-08 52.9 11.0 97 130-300 5-101 (142)
71 COG3830 ACT domain-containing 97.7 6.6E-05 1.4E-09 56.5 4.5 67 128-200 3-69 (90)
72 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00081 1.8E-08 48.7 9.4 62 38-105 2-64 (74)
73 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.0011 2.3E-08 48.1 9.6 60 131-197 2-62 (74)
74 COG0788 PurU Formyltetrahydrof 97.5 0.00032 6.9E-09 63.0 7.8 49 34-82 6-56 (287)
75 PRK06027 purU formyltetrahydro 97.5 0.00082 1.8E-08 62.2 10.2 66 127-198 5-72 (286)
76 COG3830 ACT domain-containing 97.5 9.2E-05 2E-09 55.7 2.7 48 35-82 3-50 (90)
77 PRK13010 purU formyltetrahydro 97.4 0.00073 1.6E-08 62.6 8.2 67 127-198 8-76 (289)
78 TIGR00655 PurU formyltetrahydr 97.3 0.0011 2.4E-08 61.2 9.1 63 130-198 2-66 (280)
79 PRK13011 formyltetrahydrofolat 97.3 0.0015 3.1E-08 60.6 9.5 66 127-199 6-73 (286)
80 cd04886 ACT_ThrD-II-like C-ter 97.3 0.0031 6.8E-08 44.7 9.1 60 131-197 1-65 (73)
81 cd04877 ACT_TyrR N-terminal AC 97.3 0.0019 4.2E-08 47.0 8.1 35 130-164 2-36 (74)
82 cd04889 ACT_PDH-BS-like C-term 97.2 0.0013 2.8E-08 45.0 6.3 46 131-176 1-47 (56)
83 cd04886 ACT_ThrD-II-like C-ter 97.1 0.004 8.6E-08 44.2 8.1 61 38-104 1-66 (73)
84 PRK07431 aspartate kinase; Pro 97.0 0.14 3.1E-06 52.1 21.7 193 34-300 347-554 (587)
85 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0031 6.8E-08 44.8 6.9 45 129-175 2-46 (66)
86 PRK13562 acetolactate synthase 97.0 0.0043 9.3E-08 46.4 7.6 63 129-198 3-67 (84)
87 cd04889 ACT_PDH-BS-like C-term 97.0 0.0027 5.8E-08 43.5 6.2 46 38-83 1-47 (56)
88 cd04909 ACT_PDH-BS C-terminal 97.0 0.008 1.7E-07 42.8 8.9 36 129-164 2-37 (69)
89 CHL00100 ilvH acetohydroxyacid 97.0 0.0059 1.3E-07 52.2 9.4 64 129-200 3-68 (174)
90 cd04888 ACT_PheB-BS C-terminal 97.0 0.0077 1.7E-07 43.6 8.8 61 130-197 2-64 (76)
91 PRK08178 acetolactate synthase 97.0 0.0064 1.4E-07 46.7 8.3 64 126-198 6-71 (96)
92 PRK06737 acetolactate synthase 96.9 0.0069 1.5E-07 44.6 7.9 62 129-198 3-66 (76)
93 PRK07431 aspartate kinase; Pro 96.9 0.11 2.4E-06 53.0 19.1 191 42-301 278-473 (587)
94 cd04908 ACT_Bt0572_1 N-termina 96.8 0.0052 1.1E-07 43.7 6.7 39 36-74 2-40 (66)
95 cd04888 ACT_PheB-BS C-terminal 96.8 0.012 2.6E-07 42.6 8.7 63 37-104 2-65 (76)
96 cd04878 ACT_AHAS N-terminal AC 96.8 0.016 3.4E-07 40.9 9.1 60 130-197 2-63 (72)
97 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.011 2.3E-07 41.6 8.1 44 38-81 2-47 (71)
98 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.014 3E-07 42.0 8.6 35 130-164 2-36 (79)
99 TIGR00119 acolac_sm acetolacta 96.7 0.012 2.6E-07 49.6 9.2 64 129-200 2-67 (157)
100 COG0788 PurU Formyltetrahydrof 96.7 0.0083 1.8E-07 54.1 8.3 37 127-163 6-42 (287)
101 cd04879 ACT_3PGDH-like ACT_3PG 96.7 0.0061 1.3E-07 42.9 6.2 45 131-175 2-48 (71)
102 cd04877 ACT_TyrR N-terminal AC 96.7 0.0075 1.6E-07 43.9 6.6 37 37-74 2-38 (74)
103 cd04874 ACT_Af1403 N-terminal 96.6 0.017 3.7E-07 40.8 8.3 47 130-176 2-49 (72)
104 PRK11895 ilvH acetolactate syn 96.6 0.02 4.3E-07 48.4 9.5 64 129-200 3-68 (161)
105 cd04903 ACT_LSD C-terminal ACT 96.6 0.017 3.7E-07 40.6 8.0 46 131-176 2-49 (71)
106 PRK11152 ilvM acetolactate syn 96.6 0.015 3.2E-07 42.8 7.6 61 129-198 4-66 (76)
107 cd04903 ACT_LSD C-terminal ACT 96.6 0.018 4E-07 40.5 8.0 44 38-81 2-47 (71)
108 cd04901 ACT_3PGDH C-terminal A 96.6 0.0028 6E-08 45.1 3.6 44 38-81 2-45 (69)
109 PRK13562 acetolactate synthase 96.5 0.016 3.6E-07 43.3 7.7 64 37-106 4-69 (84)
110 cd04874 ACT_Af1403 N-terminal 96.5 0.017 3.6E-07 40.9 7.7 45 37-81 2-47 (72)
111 cd04901 ACT_3PGDH C-terminal A 96.5 0.0035 7.5E-08 44.5 3.8 46 131-176 2-47 (69)
112 PRK08577 hypothetical protein; 96.5 0.035 7.7E-07 45.5 10.1 52 124-175 52-105 (136)
113 cd04882 ACT_Bt0572_2 C-termina 96.4 0.012 2.5E-07 41.1 6.1 44 38-81 2-47 (65)
114 cd04909 ACT_PDH-BS C-terminal 96.4 0.022 4.8E-07 40.5 7.4 36 36-71 2-37 (69)
115 PRK08178 acetolactate synthase 96.3 0.033 7.1E-07 42.8 8.4 64 34-105 7-72 (96)
116 cd04884 ACT_CBS C-terminal ACT 96.3 0.035 7.5E-07 40.0 8.1 34 131-164 2-35 (72)
117 cd04905 ACT_CM-PDT C-terminal 96.3 0.067 1.4E-06 39.4 9.8 48 129-176 2-50 (80)
118 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.3 0.014 3.1E-07 41.9 6.0 45 37-81 2-48 (79)
119 PRK06737 acetolactate synthase 96.2 0.04 8.7E-07 40.5 8.1 62 37-105 4-67 (76)
120 cd04902 ACT_3PGDH-xct C-termin 96.2 0.023 5E-07 40.6 6.9 45 38-82 2-48 (73)
121 PRK04435 hypothetical protein; 96.2 0.054 1.2E-06 45.1 9.9 76 24-104 58-134 (147)
122 cd04898 ACT_ACR-like_4 ACT dom 96.2 0.0011 2.5E-08 47.9 -0.2 34 270-303 2-35 (77)
123 TIGR00119 acolac_sm acetolacta 96.2 0.28 6E-06 41.3 14.1 105 37-159 3-114 (157)
124 cd04882 ACT_Bt0572_2 C-termina 96.2 0.014 3E-07 40.8 5.3 34 131-164 2-35 (65)
125 cd04878 ACT_AHAS N-terminal AC 96.1 0.028 6.2E-07 39.5 6.9 46 37-82 2-49 (72)
126 cd04884 ACT_CBS C-terminal ACT 96.1 0.046 1E-06 39.3 8.0 62 38-105 2-66 (72)
127 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.069 1.5E-06 36.5 8.7 46 131-176 1-47 (71)
128 PRK08577 hypothetical protein; 96.1 0.087 1.9E-06 43.2 10.5 49 34-82 55-105 (136)
129 cd04902 ACT_3PGDH-xct C-termin 96.0 0.017 3.8E-07 41.2 5.5 46 131-176 2-49 (73)
130 PRK04435 hypothetical protein; 95.8 0.11 2.4E-06 43.3 9.8 67 124-196 65-132 (147)
131 PRK11152 ilvM acetolactate syn 95.7 0.06 1.3E-06 39.6 7.1 61 36-104 4-66 (76)
132 CHL00100 ilvH acetohydroxyacid 95.7 0.031 6.8E-07 47.8 6.5 34 37-70 4-37 (174)
133 PRK11895 ilvH acetolactate syn 95.7 0.11 2.4E-06 43.9 9.7 105 37-159 4-115 (161)
134 cd02116 ACT ACT domains are co 95.7 0.05 1.1E-06 35.3 6.2 35 131-165 1-35 (60)
135 cd04883 ACT_AcuB C-terminal AC 95.6 0.064 1.4E-06 38.3 7.1 47 36-82 2-50 (72)
136 cd04876 ACT_RelA-SpoT ACT dom 95.5 0.14 3.1E-06 34.8 8.4 45 38-82 1-46 (71)
137 cd04905 ACT_CM-PDT C-terminal 95.5 0.13 2.8E-06 37.8 8.5 47 36-82 2-49 (80)
138 cd04883 ACT_AcuB C-terminal AC 95.5 0.071 1.5E-06 38.0 6.8 47 129-175 2-50 (72)
139 TIGR00656 asp_kin_monofn aspar 95.5 0.53 1.1E-05 45.6 14.9 106 34-158 259-370 (401)
140 PRK07334 threonine dehydratase 95.5 0.11 2.4E-06 50.4 10.2 65 127-198 325-394 (403)
141 cd02116 ACT ACT domains are co 95.4 0.066 1.4E-06 34.7 6.0 34 38-71 1-34 (60)
142 PF13710 ACT_5: ACT domain; PD 95.2 0.09 2E-06 37.1 6.4 54 137-198 1-56 (63)
143 PRK06635 aspartate kinase; Rev 95.1 0.67 1.4E-05 44.9 14.4 107 36-159 263-374 (404)
144 PRK07334 threonine dehydratase 95.1 0.12 2.6E-06 50.2 9.2 63 36-104 327-394 (403)
145 cd04898 ACT_ACR-like_4 ACT dom 95.0 0.056 1.2E-06 39.3 4.9 68 131-200 3-74 (77)
146 PRK08210 aspartate kinase I; R 95.0 1.5 3.2E-05 42.6 16.4 99 34-158 270-372 (403)
147 cd04871 ACT_PSP_2 ACT domains 94.9 0.025 5.5E-07 42.4 3.0 61 130-198 1-71 (84)
148 PRK06635 aspartate kinase; Rev 94.8 0.36 7.8E-06 46.8 11.6 107 129-299 263-374 (404)
149 cd04880 ACT_AAAH-PDT-like ACT 94.6 0.48 1E-05 34.2 9.2 46 131-176 2-48 (75)
150 TIGR00656 asp_kin_monofn aspar 94.4 0.93 2E-05 43.9 13.4 106 127-298 259-370 (401)
151 cd04885 ACT_ThrD-I Tandem C-te 94.3 0.37 7.9E-06 34.3 7.8 60 132-198 2-61 (68)
152 PRK10872 relA (p)ppGpp synthet 94.2 0.36 7.7E-06 50.4 10.5 75 24-104 654-731 (743)
153 cd04931 ACT_PAH ACT domain of 94.2 0.67 1.5E-05 35.2 9.4 70 127-201 13-83 (90)
154 cd04885 ACT_ThrD-I Tandem C-te 94.1 0.21 4.5E-06 35.6 6.2 62 38-105 1-62 (68)
155 PRK10872 relA (p)ppGpp synthet 94.1 0.31 6.8E-06 50.8 9.7 63 128-197 666-730 (743)
156 TIGR00719 sda_beta L-serine de 94.1 0.29 6.2E-06 43.2 8.2 53 124-176 144-198 (208)
157 PRK11092 bifunctional (p)ppGpp 93.9 0.48 1E-05 49.3 10.7 75 25-105 615-691 (702)
158 PRK06291 aspartate kinase; Pro 93.8 2.6 5.7E-05 41.7 15.3 105 34-157 320-430 (465)
159 PF13710 ACT_5: ACT domain; PD 93.7 0.26 5.6E-06 34.8 5.8 39 44-82 1-41 (63)
160 PRK11092 bifunctional (p)ppGpp 93.5 0.4 8.7E-06 49.8 9.3 63 128-197 626-689 (702)
161 COG1707 ACT domain-containing 93.4 0.37 8E-06 40.7 7.1 47 130-176 4-52 (218)
162 cd04931 ACT_PAH ACT domain of 93.3 1.1 2.3E-05 34.1 9.1 40 29-70 8-47 (90)
163 PRK11790 D-3-phosphoglycerate 93.1 0.19 4E-06 49.0 6.0 50 127-176 337-386 (409)
164 PRK09034 aspartate kinase; Rev 93.1 3.2 6.8E-05 41.1 14.7 107 34-159 307-419 (454)
165 cd04880 ACT_AAAH-PDT-like ACT 93.0 0.47 1E-05 34.3 6.6 29 38-66 2-30 (75)
166 TIGR00691 spoT_relA (p)ppGpp s 93.0 0.81 1.8E-05 47.5 10.6 75 24-104 598-674 (683)
167 cd04904 ACT_AAAH ACT domain of 92.8 0.76 1.7E-05 33.3 7.5 46 131-176 3-49 (74)
168 PF13840 ACT_7: ACT domain ; P 92.8 0.068 1.5E-06 37.9 1.8 35 266-300 4-42 (65)
169 COG0317 SpoT Guanosine polypho 92.6 0.57 1.2E-05 48.3 8.7 64 126-196 625-689 (701)
170 TIGR00691 spoT_relA (p)ppGpp s 92.6 0.79 1.7E-05 47.7 9.9 63 128-197 610-673 (683)
171 cd04929 ACT_TPH ACT domain of 92.5 1 2.2E-05 32.9 7.7 46 131-176 3-49 (74)
172 PRK06291 aspartate kinase; Pro 92.5 3.1 6.7E-05 41.3 13.6 108 127-300 320-433 (465)
173 cd04871 ACT_PSP_2 ACT domains 92.1 0.11 2.3E-06 39.0 2.1 31 37-67 1-32 (84)
174 COG1707 ACT domain-containing 92.0 0.57 1.2E-05 39.6 6.5 37 37-73 4-41 (218)
175 PF13840 ACT_7: ACT domain ; P 91.9 0.74 1.6E-05 32.5 6.2 45 127-176 5-53 (65)
176 PRK08210 aspartate kinase I; R 91.8 3.4 7.4E-05 40.0 12.9 33 266-298 337-372 (403)
177 PRK06382 threonine dehydratase 91.7 1.4 3E-05 42.9 10.1 67 125-198 327-398 (406)
178 COG0317 SpoT Guanosine polypho 91.6 1.2 2.6E-05 46.1 9.6 75 24-104 615-691 (701)
179 cd04906 ACT_ThrD-I_1 First of 90.7 2.7 5.8E-05 31.3 8.6 61 130-198 3-64 (85)
180 PRK09084 aspartate kinase III; 90.6 17 0.00036 36.0 16.4 104 34-155 305-414 (448)
181 PRK06545 prephenate dehydrogen 90.2 1.2 2.7E-05 42.4 8.0 52 125-176 287-338 (359)
182 PRK11899 prephenate dehydratas 90.2 1.7 3.7E-05 40.1 8.5 49 128-176 194-243 (279)
183 COG0527 LysC Aspartokinases [A 90.0 19 0.00041 35.6 16.1 120 33-176 305-430 (447)
184 KOG2663 Acetolactate synthase, 89.8 0.46 1E-05 42.7 4.2 50 127-176 76-127 (309)
185 TIGR00657 asp_kinases aspartat 89.8 17 0.00037 35.7 15.7 108 34-160 301-413 (441)
186 PRK09181 aspartate kinase; Val 89.7 23 0.0005 35.3 16.6 102 34-158 328-434 (475)
187 cd04906 ACT_ThrD-I_1 First of 89.6 2 4.3E-05 32.0 7.1 62 37-105 3-65 (85)
188 PRK11790 D-3-phosphoglycerate 89.6 0.62 1.3E-05 45.4 5.4 61 34-99 337-397 (409)
189 TIGR00719 sda_beta L-serine de 89.3 1.7 3.7E-05 38.2 7.6 48 34-81 147-196 (208)
190 cd04930 ACT_TH ACT domain of t 89.2 2.5 5.5E-05 33.6 7.7 49 128-176 41-90 (115)
191 PLN02551 aspartokinase 88.9 25 0.00054 35.5 16.3 123 34-176 365-493 (521)
192 PF05088 Bac_GDH: Bacterial NA 88.9 2.9 6.4E-05 47.1 10.5 102 2-103 447-562 (1528)
193 cd04904 ACT_AAAH ACT domain of 88.8 1.7 3.6E-05 31.5 6.0 31 38-70 3-33 (74)
194 PRK09436 thrA bifunctional asp 88.7 17 0.00037 38.8 15.7 112 33-159 313-430 (819)
195 COG0077 PheA Prephenate dehydr 88.6 2.5 5.3E-05 39.0 8.2 50 127-176 193-243 (279)
196 PRK09034 aspartate kinase; Rev 88.6 9.7 0.00021 37.6 13.1 37 267-303 384-423 (454)
197 PRK13581 D-3-phosphoglycerate 88.1 1.3 2.9E-05 44.6 6.7 52 125-176 449-502 (526)
198 PRK06382 threonine dehydratase 88.1 2.9 6.4E-05 40.6 9.0 67 33-105 328-399 (406)
199 TIGR00657 asp_kinases aspartat 88.0 14 0.0003 36.3 13.7 35 266-300 376-413 (441)
200 PRK11899 prephenate dehydratas 88.0 3.3 7.2E-05 38.2 8.8 52 35-87 194-246 (279)
201 PRK09436 thrA bifunctional asp 87.9 9.4 0.0002 40.7 13.2 113 126-300 313-431 (819)
202 PRK08198 threonine dehydratase 87.7 5.1 0.00011 38.8 10.4 38 125-162 324-361 (404)
203 cd04929 ACT_TPH ACT domain of 87.4 1.8 3.8E-05 31.6 5.4 48 38-87 3-52 (74)
204 PRK08961 bifunctional aspartat 86.8 22 0.00047 38.2 15.3 103 34-156 321-429 (861)
205 PRK08818 prephenate dehydrogen 86.4 1.8 3.9E-05 41.6 6.3 49 127-176 294-343 (370)
206 COG0077 PheA Prephenate dehydr 86.4 3.8 8.2E-05 37.8 8.1 51 34-87 193-246 (279)
207 PRK06545 prephenate dehydrogen 86.4 1.6 3.5E-05 41.6 6.1 39 32-70 287-325 (359)
208 PRK12483 threonine dehydratase 86.3 27 0.00058 35.3 14.8 119 33-158 343-471 (521)
209 COG0440 IlvH Acetolactate synt 86.3 2.7 5.8E-05 35.5 6.5 64 129-200 5-70 (163)
210 PRK08198 threonine dehydratase 86.2 5 0.00011 38.9 9.4 36 34-69 326-361 (404)
211 TIGR01127 ilvA_1Cterm threonin 86.0 7 0.00015 37.5 10.3 64 127-197 304-372 (380)
212 TIGR01327 PGDH D-3-phosphoglyc 86.0 1.4 3E-05 44.4 5.6 51 126-176 449-501 (525)
213 PLN02551 aspartokinase 85.8 16 0.00035 36.8 12.9 114 126-303 364-482 (521)
214 PRK06349 homoserine dehydrogen 85.4 4.6 0.0001 39.6 8.8 51 126-176 346-396 (426)
215 PRK09084 aspartate kinase III; 85.2 25 0.00054 34.7 13.8 106 126-296 304-415 (448)
216 COG0440 IlvH Acetolactate synt 85.0 13 0.00029 31.4 10.0 64 37-107 6-71 (163)
217 PRK10622 pheA bifunctional cho 83.4 6.1 0.00013 38.2 8.5 50 127-176 296-346 (386)
218 PRK08818 prephenate dehydrogen 83.2 1.9 4.1E-05 41.5 4.9 45 269-314 296-341 (370)
219 KOG2663 Acetolactate synthase, 83.0 1.6 3.4E-05 39.3 3.9 37 34-70 76-112 (309)
220 TIGR01127 ilvA_1Cterm threonin 82.6 9 0.00019 36.7 9.3 64 35-104 305-373 (380)
221 PRK09466 metL bifunctional asp 82.1 76 0.0017 33.9 17.7 103 34-158 316-424 (810)
222 cd04930 ACT_TH ACT domain of t 82.1 5.4 0.00012 31.7 6.3 34 35-70 41-74 (115)
223 PRK09181 aspartate kinase; Val 81.0 19 0.0004 35.9 11.1 35 266-300 400-436 (475)
224 COG2150 Predicted regulator of 80.8 3.1 6.6E-05 35.0 4.6 35 34-68 94-128 (167)
225 cd04937 ACT_AKi-DapG-BS_2 ACT 80.1 17 0.00036 25.1 8.3 28 130-157 3-33 (64)
226 PRK09224 threonine dehydratase 80.0 69 0.0015 32.1 15.3 122 34-162 327-456 (504)
227 COG2150 Predicted regulator of 79.5 3.4 7.4E-05 34.7 4.5 34 127-160 94-127 (167)
228 PTZ00324 glutamate dehydrogena 78.7 16 0.00034 39.6 10.1 88 13-100 204-299 (1002)
229 PRK10622 pheA bifunctional cho 78.3 12 0.00025 36.3 8.4 53 34-87 296-349 (386)
230 cd04913 ACT_AKii-LysC-BS-like_ 77.9 15 0.00032 25.5 7.0 26 135-160 9-34 (75)
231 cd04932 ACT_AKiii-LysC-EC_1 AC 77.7 18 0.00039 26.2 7.5 44 36-83 2-48 (75)
232 PRK08841 aspartate kinase; Val 77.4 73 0.0016 30.9 15.0 92 34-158 257-348 (392)
233 cd04912 ACT_AKiii-LysC-EC-like 77.4 19 0.00042 25.8 7.6 62 130-198 3-67 (75)
234 cd04932 ACT_AKiii-LysC-EC_1 AC 77.3 25 0.00054 25.5 8.3 43 130-176 3-48 (75)
235 COG0527 LysC Aspartokinases [A 77.2 52 0.0011 32.5 12.8 34 267-300 382-418 (447)
236 PRK14636 hypothetical protein; 76.3 44 0.00096 28.6 10.6 66 137-204 3-68 (176)
237 COG4492 PheB ACT domain-contai 75.7 15 0.00032 30.0 6.9 56 27-82 64-120 (150)
238 COG3978 Acetolactate synthase 75.5 27 0.00058 25.9 7.6 63 35-101 3-67 (86)
239 cd04919 ACT_AK-Hom3_2 ACT doma 75.5 16 0.00035 25.0 6.6 34 37-70 3-39 (66)
240 PRK13581 D-3-phosphoglycerate 74.3 7.1 0.00015 39.4 6.0 61 34-99 451-513 (526)
241 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.3 3.6 7.9E-05 28.2 2.9 35 269-303 2-39 (66)
242 cd04891 ACT_AK-LysC-DapG-like_ 73.9 12 0.00025 24.7 5.4 42 135-176 8-50 (61)
243 cd04922 ACT_AKi-HSDH-ThrA_2 AC 73.7 25 0.00054 23.8 8.5 30 130-159 3-35 (66)
244 PRK08526 threonine dehydratase 73.2 32 0.00069 33.5 10.1 67 125-198 323-394 (403)
245 PLN02550 threonine dehydratase 71.6 1.3E+02 0.0027 31.0 14.9 115 34-158 416-541 (591)
246 TIGR01327 PGDH D-3-phosphoglyc 70.7 7.3 0.00016 39.3 5.2 61 35-100 451-513 (525)
247 cd04891 ACT_AK-LysC-DapG-like_ 70.5 16 0.00035 24.0 5.5 41 42-82 8-49 (61)
248 COG3978 Acetolactate synthase 70.2 31 0.00068 25.5 6.9 65 128-201 3-69 (86)
249 cd04868 ACT_AK-like ACT domain 69.8 9.4 0.0002 24.8 4.1 29 131-159 3-34 (60)
250 PRK06349 homoserine dehydrogen 69.7 17 0.00036 35.6 7.3 50 34-83 347-396 (426)
251 cd04935 ACT_AKiii-DAPDC_1 ACT 69.5 38 0.00083 24.4 7.5 57 135-198 11-67 (75)
252 cd04868 ACT_AK-like ACT domain 69.4 5.7 0.00012 26.0 2.9 31 271-301 3-36 (60)
253 cd04912 ACT_AKiii-LysC-EC-like 68.9 39 0.00084 24.1 7.5 28 37-64 3-33 (75)
254 cd04890 ACT_AK-like_1 ACT doma 68.9 33 0.00072 23.2 7.4 37 43-83 11-47 (62)
255 PRK11898 prephenate dehydratas 68.2 32 0.00069 31.7 8.5 49 128-176 196-246 (283)
256 cd04937 ACT_AKi-DapG-BS_2 ACT 67.4 15 0.00033 25.4 4.8 28 37-64 3-33 (64)
257 PRK08961 bifunctional aspartat 67.2 1E+02 0.0023 33.1 13.2 34 126-159 320-356 (861)
258 COG4492 PheB ACT domain-contai 67.1 11 0.00024 30.7 4.4 51 126-176 70-121 (150)
259 cd04892 ACT_AK-like_2 ACT doma 66.9 25 0.00054 23.2 5.9 32 37-68 2-36 (65)
260 cd04913 ACT_AKii-LysC-BS-like_ 65.7 20 0.00043 24.8 5.3 27 42-68 9-35 (75)
261 cd04919 ACT_AK-Hom3_2 ACT doma 64.8 41 0.0009 22.8 8.6 31 130-160 3-36 (66)
262 cd04924 ACT_AK-Arch_2 ACT doma 64.3 37 0.0008 22.9 6.4 34 37-70 3-39 (66)
263 PRK08526 threonine dehydratase 63.8 36 0.00079 33.1 8.3 67 33-105 324-395 (403)
264 cd04916 ACT_AKiii-YclM-BS_2 AC 62.9 40 0.00086 22.8 6.4 34 37-70 3-39 (66)
265 cd04924 ACT_AK-Arch_2 ACT doma 61.8 46 0.001 22.4 8.6 31 130-160 3-36 (66)
266 TIGR01268 Phe4hydrox_tetr phen 61.8 44 0.00096 32.8 8.4 49 128-176 16-65 (436)
267 cd04890 ACT_AK-like_1 ACT doma 61.0 48 0.001 22.3 7.1 38 135-176 10-47 (62)
268 TIGR02079 THD1 threonine dehyd 60.2 83 0.0018 30.6 10.1 67 125-198 322-390 (409)
269 TIGR02079 THD1 threonine dehyd 60.2 49 0.0011 32.2 8.5 67 33-105 323-391 (409)
270 PRK08639 threonine dehydratase 59.4 74 0.0016 31.0 9.7 68 125-198 333-401 (420)
271 PRK09466 metL bifunctional asp 59.3 2E+02 0.0043 30.8 13.4 33 127-159 316-351 (810)
272 PLN02317 arogenate dehydratase 58.7 72 0.0016 30.9 9.1 37 128-164 283-319 (382)
273 TIGR01270 Trp_5_monoox tryptop 58.2 51 0.0011 32.7 8.1 51 126-176 29-81 (464)
274 PRK11898 prephenate dehydratas 57.4 52 0.0011 30.3 7.8 35 34-70 195-230 (283)
275 cd04935 ACT_AKiii-DAPDC_1 ACT 56.6 59 0.0013 23.4 6.5 57 42-104 11-67 (75)
276 PRK10820 DNA-binding transcrip 54.8 16 0.00035 36.7 4.3 35 130-164 2-36 (520)
277 cd04892 ACT_AK-like_2 ACT doma 53.9 60 0.0013 21.2 8.2 30 130-159 2-34 (65)
278 cd04921 ACT_AKi-HSDH-ThrA-like 53.4 72 0.0016 22.6 6.6 61 37-104 3-66 (80)
279 cd04916 ACT_AKiii-YclM-BS_2 AC 53.1 68 0.0015 21.6 8.5 31 130-160 3-36 (66)
280 PRK08639 threonine dehydratase 52.0 79 0.0017 30.8 8.5 68 33-105 334-402 (420)
281 cd04920 ACT_AKiii-DAPDC_2 ACT 51.8 76 0.0016 21.8 8.0 27 130-156 2-31 (63)
282 cd04934 ACT_AK-Hom3_1 CT domai 51.7 85 0.0018 22.5 6.6 54 136-198 12-65 (73)
283 cd04921 ACT_AKi-HSDH-ThrA-like 51.7 84 0.0018 22.2 7.4 31 130-160 3-36 (80)
284 PRK10820 DNA-binding transcrip 51.6 22 0.00048 35.7 4.7 36 37-72 2-37 (520)
285 PRK12483 threonine dehydratase 51.3 2.8E+02 0.006 28.1 15.2 130 125-301 342-474 (521)
286 cd04933 ACT_AK1-AT_1 ACT domai 51.0 15 0.00033 26.9 2.6 38 135-176 11-48 (78)
287 PRK00907 hypothetical protein; 50.1 1E+02 0.0022 23.5 7.0 63 127-196 16-82 (92)
288 cd04914 ACT_AKi-DapG-BS_1 ACT 49.5 30 0.00065 24.3 3.9 30 130-159 3-33 (67)
289 cd04936 ACT_AKii-LysC-BS-like_ 49.4 74 0.0016 21.0 8.0 30 131-160 3-35 (63)
290 TIGR01268 Phe4hydrox_tetr phen 48.8 68 0.0015 31.6 7.3 34 35-70 16-49 (436)
291 PF04083 Abhydro_lipase: Parti 48.1 53 0.0011 23.0 4.8 33 53-85 2-34 (63)
292 PLN02317 arogenate dehydratase 47.3 39 0.00083 32.7 5.3 36 269-304 284-319 (382)
293 COG3603 Uncharacterized conser 47.1 33 0.00072 27.4 4.0 42 253-298 52-96 (128)
294 cd04923 ACT_AK-LysC-DapG-like_ 46.6 83 0.0018 20.7 8.0 30 131-160 3-35 (63)
295 PRK14646 hypothetical protein; 46.2 1.8E+02 0.0038 24.3 9.2 94 47-155 8-102 (155)
296 TIGR01124 ilvA_2Cterm threonin 45.8 1.7E+02 0.0037 29.4 9.9 65 126-198 323-387 (499)
297 PRK09224 threonine dehydratase 45.1 1.7E+02 0.0036 29.4 9.7 65 126-198 326-391 (504)
298 PF05088 Bac_GDH: Bacterial NA 44.6 5.6E+02 0.012 29.7 23.5 182 23-205 329-570 (1528)
299 PRK00907 hypothetical protein; 44.4 1.1E+02 0.0025 23.2 6.5 65 35-105 17-85 (92)
300 cd04936 ACT_AKii-LysC-BS-like_ 44.4 43 0.00094 22.2 4.0 30 38-67 3-35 (63)
301 TIGR01270 Trp_5_monoox tryptop 44.1 67 0.0015 31.8 6.5 38 31-70 27-64 (464)
302 cd04933 ACT_AK1-AT_1 ACT domai 41.9 25 0.00055 25.8 2.5 38 42-83 11-48 (78)
303 PRK14634 hypothetical protein; 40.9 2.1E+02 0.0046 23.8 9.1 95 46-155 7-102 (155)
304 cd04914 ACT_AKi-DapG-BS_1 ACT 40.4 50 0.0011 23.1 3.8 43 37-83 3-46 (67)
305 TIGR01124 ilvA_2Cterm threonin 40.4 1.5E+02 0.0032 29.8 8.5 134 33-175 323-468 (499)
306 PRK14636 hypothetical protein; 38.3 2.5E+02 0.0055 23.9 8.7 61 45-107 4-65 (176)
307 COG3603 Uncharacterized conser 37.7 94 0.002 24.9 5.2 38 33-72 61-101 (128)
308 cd07247 SgaA_N_like N-terminal 33.0 1.9E+02 0.0041 21.5 6.4 51 33-89 60-110 (114)
309 PLN02828 formyltetrahydrofolat 32.5 4E+02 0.0086 24.5 10.3 30 52-81 1-32 (268)
310 COG2061 ACT-domain-containing 31.8 56 0.0012 27.4 3.2 31 35-65 5-35 (170)
311 COG3283 TyrR Transcriptional r 31.0 1E+02 0.0022 29.9 5.3 33 130-162 2-34 (511)
312 PRK02047 hypothetical protein; 31.0 2.3E+02 0.005 21.3 6.7 66 33-104 14-83 (91)
313 PRK05925 aspartate kinase; Pro 30.3 5.4E+02 0.012 25.3 15.7 102 35-158 300-404 (440)
314 PRK14645 hypothetical protein; 30.0 3.3E+02 0.0071 22.7 9.0 62 44-107 7-69 (154)
315 cd04918 ACT_AK1-AT_2 ACT domai 29.7 1.9E+02 0.004 19.8 8.5 30 130-159 3-34 (65)
316 COG2902 NAD-specific glutamate 29.5 1.1E+02 0.0025 34.5 5.9 45 21-65 72-118 (1592)
317 cd04915 ACT_AK-Ectoine_2 ACT d 28.4 2E+02 0.0044 19.8 7.5 29 130-158 4-34 (66)
318 cd04907 ACT_ThrD-I_2 Second of 27.2 2.5E+02 0.0054 20.5 6.6 45 37-82 3-47 (81)
319 COG2061 ACT-domain-containing 27.2 87 0.0019 26.3 3.6 33 127-159 4-36 (170)
320 cd04917 ACT_AKiii-LysC-EC_2 AC 26.0 2.1E+02 0.0046 19.3 8.3 42 130-176 3-48 (64)
321 PRK14637 hypothetical protein; 25.6 3.9E+02 0.0085 22.2 8.0 61 137-202 6-67 (151)
322 cd07261 Glo_EDI_BRP_like_11 Th 25.3 1.7E+02 0.0037 21.7 5.0 52 34-89 59-110 (114)
323 PRK00341 hypothetical protein; 24.1 3.2E+02 0.0069 20.6 6.3 63 35-104 17-83 (91)
324 PLN02550 threonine dehydratase 23.9 8.1E+02 0.018 25.3 14.4 126 127-300 416-543 (591)
325 PRK14640 hypothetical protein; 23.7 4.2E+02 0.0092 21.9 9.0 76 48-139 8-85 (152)
326 PF01709 Transcrip_reg: Transc 22.4 2.8E+02 0.0061 24.8 6.3 113 24-163 80-197 (234)
327 PRK00092 ribosome maturation p 22.0 4.5E+02 0.0098 21.6 8.3 60 141-204 9-68 (154)
328 PRK08841 aspartate kinase; Val 22.0 1.3E+02 0.0029 29.0 4.5 32 33-64 316-347 (392)
329 PRK14634 hypothetical protein; 22.0 4.7E+02 0.01 21.8 8.9 65 138-204 6-70 (155)
330 PRK14645 hypothetical protein; 22.0 4.7E+02 0.01 21.8 8.9 65 137-204 7-72 (154)
331 PF09843 DUF2070: Predicted me 21.6 2.1E+02 0.0045 24.4 5.1 69 34-105 74-146 (179)
332 PRK14646 hypothetical protein; 20.8 5E+02 0.011 21.6 9.2 63 140-204 8-70 (155)
333 cd07247 SgaA_N_like N-terminal 20.6 3.6E+02 0.0077 19.9 6.4 51 126-183 60-110 (114)
334 PTZ00324 glutamate dehydrogena 20.5 4.7E+02 0.01 28.8 8.4 47 134-181 239-286 (1002)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=1.2e-31 Score=278.87 Aligned_cols=198 Identities=20% Similarity=0.274 Sum_probs=169.7
Q ss_pred CCCCCCCCCChH----HHHHHhhcC-CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCE
Q 021245 1 MANAYWPYFDPE----YESLSLRIN-PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGW 74 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~~-~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~ 74 (315)
|+++||.+++++ |++++.... +|.|.+++....++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+
T Consensus 638 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~ 717 (854)
T PRK01759 638 CPEDYFLRNTPKQIAWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY 717 (854)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE
Confidence 689999999999 999997764 6788899999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEEEEcCCCCCCCChhHH----HHHHHHHCCCCCCCC---------CcccCCceeeeecCCCceEEEEEEeCCcccH
Q 021245 75 FMDVFHVIDQQGKKITDGKTI----DYIEKALGPKGHITA---------GAKTWPSKQVGVHSVGDHTAIELIGRDRPGL 141 (315)
Q Consensus 75 ~~d~f~v~~~~g~~~~~~~~~----~~l~~~L~~~~~~~~---------~~~~~~~~~v~~~~~~~~t~i~i~~~DrpgL 141 (315)
++|+|+|.+.+|.+++ ++.+ +.|+++|.+...... .+..++++.++++.+..+|+|+|.++|||||
T Consensus 718 alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL 796 (854)
T PRK01759 718 VLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL 796 (854)
T ss_pred EEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence 9999999999998875 3344 444455544332111 0123456677788889999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 142 l~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
|++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++ +.|+++|.++|+
T Consensus 797 L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~ 854 (854)
T PRK01759 797 LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS 854 (854)
T ss_pred HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 89999887655 899999988763
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=5e-32 Score=281.66 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=143.3
Q ss_pred ceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHH
Q 021245 117 SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQ 195 (315)
Q Consensus 117 ~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~ 195 (315)
.+.++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|.++|+|+|++ .+|.++. ++++++|++.
T Consensus 666 ~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~ 743 (854)
T PRK01759 666 LVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQA 743 (854)
T ss_pred EEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHH
Confidence 34566788889999999999999999999999999999999999998 5799999999999 8898875 5788999999
Q ss_pred HHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe
Q 021245 196 LKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC 275 (315)
Q Consensus 196 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a 275 (315)
|.++|+++.. . ..++.+ . + . .++|.+||+|.|+|+.|.+||+|||.|
T Consensus 744 L~~aL~~~~~---~--------------~~~~~~---~-~--~----------~~~~~~~~~V~~dn~~s~~~T~iev~a 790 (854)
T PRK01759 744 LTKALNTNKL---K--------------KLNLEE---N-H--K----------LQHFHVKTEVRFLNEEKQEQTEMELFA 790 (854)
T ss_pred HHHHHcCCCC---c--------------chhccc---c-c--c----------ccCCCCCCEEEEccCCCCCeEEEEEEe
Confidence 9999987653 0 100100 0 0 0 167889999999999999999999999
Q ss_pred CCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 276 ~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
.|||||||+|+++|.++|++|++|||+|.|++|+|+|||+
T Consensus 791 ~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~ 830 (854)
T PRK01759 791 LDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILT 830 (854)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEE
Confidence 9999999999999999999999999999999999999994
No 3
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=2.2e-31 Score=277.74 Aligned_cols=200 Identities=19% Similarity=0.264 Sum_probs=171.7
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCC
Q 021245 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~--~~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g 73 (315)
|+++||.+++++ |++++.++ .+|.|.+++....++++|+|+++||||||++||++|+.+|+||++|+|+| .+|
T Consensus 661 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg 740 (884)
T PRK05007 661 CRADYFLRHTPNQLAWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG 740 (884)
T ss_pred CChHHhcCCCHHHHHHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC
Confidence 689999999999 99999886 36788899999999999999999999999999999999999999999997 678
Q ss_pred EEEEEEEEEcCCCCCCCCh---hHHHHHHHHHCCCCCCCC-C---------cccCCceeeeecCCCceEEEEEEeCCccc
Q 021245 74 WFMDVFHVIDQQGKKITDG---KTIDYIEKALGPKGHITA-G---------AKTWPSKQVGVHSVGDHTAIELIGRDRPG 140 (315)
Q Consensus 74 ~~~d~f~v~~~~g~~~~~~---~~~~~l~~~L~~~~~~~~-~---------~~~~~~~~v~~~~~~~~t~i~i~~~Drpg 140 (315)
+++|+|+|++.+|.+++++ ++.+.|+++|.+...... . +..++.+.++++.++.+|+|+|.|+||||
T Consensus 741 ~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpG 820 (884)
T PRK05007 741 MAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPG 820 (884)
T ss_pred eEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchH
Confidence 9999999999999887532 245555556654421110 0 12345566778889999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
||++|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.+++ +++.+.|+++|.++|+.
T Consensus 821 LL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 821 LLARVGKIFADLGISLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999 8888887 67889999999999864
No 4
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=4.3e-31 Score=275.64 Aligned_cols=203 Identities=18% Similarity=0.290 Sum_probs=170.0
Q ss_pred CCCCCCCCCChH----HHHHHhhcC---CCeEEEecCCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 1 MANAYWPYFDPE----YESLSLRIN---PPRASVDNSSC---PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~~---~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
|+++||.+|+++ |++++.++. .|.+.+.+... .+.++|+|+++|+||||++||++|+.+|+||++|+|+|
T Consensus 660 ~~~~Y~l~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T 739 (895)
T PRK00275 660 LGDDYFLRHTAGDIAWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT 739 (895)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE
Confidence 689999999999 999998863 56666777665 58999999999999999999999999999999999986
Q ss_pred -eCCEEEEEEEEEcCCCCCCCC-hhHHH----HHHHHHCCCCCCCCC-----------cccCCceeeeecCCCceEEEEE
Q 021245 71 -DGGWFMDVFHVIDQQGKKITD-GKTID----YIEKALGPKGHITAG-----------AKTWPSKQVGVHSVGDHTAIEL 133 (315)
Q Consensus 71 -~~g~~~d~f~v~~~~g~~~~~-~~~~~----~l~~~L~~~~~~~~~-----------~~~~~~~~v~~~~~~~~t~i~i 133 (315)
.+|+++|+|+|.+++|.++.. ++.++ .|+++|.+....+.. +..++.+.++++.+.++|+|+|
T Consensus 740 t~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V 819 (895)
T PRK00275 740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEI 819 (895)
T ss_pred cCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEE
Confidence 789999999999999987543 33444 455555544321110 1223445566788889999999
Q ss_pred EeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 134 ~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
+++||||||++|+++|+.+|+||++|+|+|.++++.|+|+|++ .+|.++.+++++++|+++|.++|.+..
T Consensus 820 ~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 820 IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999 899998877889999999999996543
No 5
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=8.7e-32 Score=280.71 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=143.2
Q ss_pred ceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHH
Q 021245 117 SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQ 195 (315)
Q Consensus 117 ~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~ 195 (315)
.+.++++++.++++|+|+++||||||++|+++|+.+|+||++|+|+|.+ |.+.|+|+|++ .+|.++. ++++++|++.
T Consensus 690 ~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~ 767 (884)
T PRK05007 690 LVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKA 767 (884)
T ss_pred eEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHH
Confidence 3456677888999999999999999999999999999999999999986 69999999999 8888874 5788999999
Q ss_pred HHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe
Q 021245 196 LKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC 275 (315)
Q Consensus 196 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a 275 (315)
|.++|.+... .. ...++.. + . .+++.+||+|.|+|+.|+.||+|||.|
T Consensus 768 L~~aL~~~~~---~~-----------~~~~~~~------~--~----------~~~~~~~~~V~~d~~~s~~~TvlEV~a 815 (884)
T PRK05007 768 LEQALTQSSP---QP-----------PKPRRLP------A--K----------LRHFNVPTEVSFLPTHTDRRSYMELIA 815 (884)
T ss_pred HHHHHcCCCC---Cc-----------ccccccc------c--c----------cCCCCCCCEEEEccCCCCCeEEEEEEe
Confidence 9999987653 00 0111110 0 0 167889999999999999999999999
Q ss_pred CCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 276 ~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
.|||||||+|+++|.++|++|++|||+|.|++|+|+|||+
T Consensus 816 ~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~ 855 (884)
T PRK05007 816 LDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA 855 (884)
T ss_pred CCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE
Confidence 9999999999999999999999999999999999999994
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=1.2e-29 Score=263.34 Aligned_cols=199 Identities=20% Similarity=0.261 Sum_probs=165.2
Q ss_pred CCCCCCCCCChH----HHHHHhhcC--CCeEEEec-CCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eC
Q 021245 1 MANAYWPYFDPE----YESLSLRIN--PPRASVDN-SSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~~--~~~v~i~~-~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~ 72 (315)
|+++||.+++++ |++++.++. .|.+.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus 649 l~~~Y~~~~~~~~I~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~ 728 (869)
T PRK04374 649 MPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPH 728 (869)
T ss_pred CCchhhcCCCHHHHHHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCC
Confidence 789999999999 999998753 45555444 67779999999999999999999999999999999999997 89
Q ss_pred CEEEEEEEEEcCCCCCCC-ChhHHHHHHHHHCCCCCCCC------C-----cccCCceeeeecCCCceEEEEEEeCCccc
Q 021245 73 GWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHITA------G-----AKTWPSKQVGVHSVGDHTAIELIGRDRPG 140 (315)
Q Consensus 73 g~~~d~f~v~~~~g~~~~-~~~~~~~l~~~L~~~~~~~~------~-----~~~~~~~~v~~~~~~~~t~i~i~~~Drpg 140 (315)
|+++|+|+|.+++|.... ...+.+.|+++|.+...... . +..++.+.++++.+.+.|+|+|++.||||
T Consensus 729 g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG 808 (869)
T PRK04374 729 DAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG 808 (869)
T ss_pred CEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence 999999999998876321 12356666777766432111 0 12334455667788899999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
||++|+++|+.+|+||++|+|+|.++++.|+|+|++ ++|.++.++++ +.|+++|.++|+
T Consensus 809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 88888766655 899999998874
No 7
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=2e-29 Score=262.15 Aligned_cols=196 Identities=19% Similarity=0.279 Sum_probs=161.9
Q ss_pred CCCCCCCCCChH----HHHHHhhcC---CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eC
Q 021245 1 MANAYWPYFDPE----YESLSLRIN---PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~ 72 (315)
|+++||.+++++ |++++.++. .|.|.+......+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus 637 ~~~~Yf~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~ 716 (856)
T PRK03059 637 LDVGYFLRHDAADIAWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRH 716 (856)
T ss_pred CChHHhccCCHHHHHHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCC
Confidence 689999999999 999998863 5766688888889999999999999999999999999999999999986 89
Q ss_pred CEEEEEEEEEcCCCCCCCChh----HHHHHHHHHCCCCCCCCC-----------cccCCceeeeecCCCceEEEEEEeCC
Q 021245 73 GWFMDVFHVIDQQGKKITDGK----TIDYIEKALGPKGHITAG-----------AKTWPSKQVGVHSVGDHTAIELIGRD 137 (315)
Q Consensus 73 g~~~d~f~v~~~~g~~~~~~~----~~~~l~~~L~~~~~~~~~-----------~~~~~~~~v~~~~~~~~t~i~i~~~D 137 (315)
|+++|+|+|.+++|. ...++ +.+.|+++|.+....+.. +..++.+.++++.+.++|+|+|+++|
T Consensus 717 g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~D 795 (856)
T PRK03059 717 GYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSAND 795 (856)
T ss_pred CeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCC
Confidence 999999999998777 33333 444555566554321110 11223345566777899999999999
Q ss_pred cccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 138 rpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
|||||++|+++|+.+|+||++|+|+|.++++.|+|+|++ ++ +.+++++++|++.|.++|+
T Consensus 796 rpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~-~~---~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 796 RPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG-SG---LSDNRLQIQLETELLDALA 855 (856)
T ss_pred cchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC-CC---CCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999976 33 4467789999999988774
No 8
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=5.1e-29 Score=262.02 Aligned_cols=203 Identities=24% Similarity=0.349 Sum_probs=172.6
Q ss_pred CCCCCCCCCChH----HHHHHhhcC----CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e
Q 021245 1 MANAYWPYFDPE----YESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D 71 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~~----~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~ 71 (315)
|+++||.+|+++ |++++.++. ++.|.+.+....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .
T Consensus 690 ~~~~yf~~~~~~~i~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~ 769 (931)
T PRK05092 690 HYPAYWLAVDLDTQARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT 769 (931)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec
Confidence 689999999999 999998863 3588889888889999999999999999999999999999999999998 8
Q ss_pred CCEEEEEEEEEcCCCCCCCChhHHHHHHH----HHCCCCCCCC-------C------cccCCceeeeecCCCceEEEEEE
Q 021245 72 GGWFMDVFHVIDQQGKKITDGKTIDYIEK----ALGPKGHITA-------G------AKTWPSKQVGVHSVGDHTAIELI 134 (315)
Q Consensus 72 ~g~~~d~f~v~~~~g~~~~~~~~~~~l~~----~L~~~~~~~~-------~------~~~~~~~~v~~~~~~~~t~i~i~ 134 (315)
+|+++|+|+|++++|.+..+++..++|++ +|.+....+. . +..++.+.++++.+.++|+|+|+
T Consensus 770 dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~ 849 (931)
T PRK05092 770 DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVN 849 (931)
T ss_pred CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEE
Confidence 99999999999988877655544555544 4433221111 0 12234556777888899999999
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 135 ~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
++||||||++|+++|+++|+||.+|+|.|.++++.|+|+|++ .+|.++.++++++.|+++|.++|.+..
T Consensus 850 ~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 850 GRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred ECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999 889998888888999999999997654
No 9
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.97 E-value=4e-29 Score=261.10 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=169.3
Q ss_pred CCCCCCCCCChH----HHHHHhhcC---CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-eeC
Q 021245 1 MANAYWPYFDPE----YESLSLRIN---PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SDG 72 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~~ 72 (315)
|+++||.+|+++ |++++.++. .|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+ |.+
T Consensus 627 ~~~~y~~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~ 706 (850)
T TIGR01693 627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKD 706 (850)
T ss_pred CCchhhcCCCHHHHHHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecC
Confidence 689999999999 999999863 578888886668999999999999999999999999999999999999 589
Q ss_pred CEEEEEEEEEcCCCCCCCChhHHH----HHHHHHCCCCCCCCC-------------cccCCceeeeecCCCceEEEEEEe
Q 021245 73 GWFMDVFHVIDQQGKKITDGKTID----YIEKALGPKGHITAG-------------AKTWPSKQVGVHSVGDHTAIELIG 135 (315)
Q Consensus 73 g~~~d~f~v~~~~g~~~~~~~~~~----~l~~~L~~~~~~~~~-------------~~~~~~~~v~~~~~~~~t~i~i~~ 135 (315)
|+++|+|+|++.+|.++.+++..+ .|+++|.+....+.. +..++.+.++++.++.+|.|+|.|
T Consensus 707 g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~ 786 (850)
T TIGR01693 707 GVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRA 786 (850)
T ss_pred CEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEE
Confidence 999999999999998887665444 445555543321110 123345667788889999999999
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 136 ~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
.|||||+++|+++|+++|+||.+|+|.|.++++.|+|+|++ ..|.|+.+ ++++.|+++|.++|
T Consensus 787 ~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 787 LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 88889876 68889999998776
No 10
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-29 Score=246.46 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=138.7
Q ss_pred eecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 121 ~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
...+..+.++|+|+++|+|.||+.+++.++..|.||++|+|+|. +|+++|+|+|++ ++|.++. +.+...++..|.++
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~~ 754 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIEA 754 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHHH
Confidence 34455588999999999999999999999999999999999987 588999999999 8998876 66778888888888
Q ss_pred HcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCC
Q 021245 200 LRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRA 279 (315)
Q Consensus 200 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRp 279 (315)
+..... . ....+|.+++ .++|.++|+|+|.|+.+..+|++||+|.|||
T Consensus 755 l~s~~~---~-----------~~~~~r~~r~------------------~~~f~i~p~v~i~~t~~~~~t~lEv~alDRp 802 (867)
T COG2844 755 LLSGKA---Q-----------PPRRRRIPRK------------------LRHFPIPPRVTILPTASNDKTVLEVRALDRP 802 (867)
T ss_pred HhcCCC---C-----------CccccccCcc------------------cceeccCCceeeccccCCCceEEEEEeCCcc
Confidence 865443 0 0112222111 2789999999999999999999999999999
Q ss_pred chHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 280 GLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
|||++++.+|++++++|++|||+|+||+|+|+|||.
T Consensus 803 GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt 838 (867)
T COG2844 803 GLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838 (867)
T ss_pred cHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence 999999999999999999999999999999999984
No 11
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.96 E-value=2.8e-28 Score=254.77 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=141.5
Q ss_pred eeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 119 QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 119 ~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
.+++....+.|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++.+++++++|++.|.
T Consensus 659 ~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~ 737 (850)
T TIGR01693 659 LIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLV 737 (850)
T ss_pred EEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHH
Confidence 344545579999999999999999999999999999999999995 4799999999999 88888877778999999999
Q ss_pred HHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC
Q 021245 198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD 277 (315)
Q Consensus 198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D 277 (315)
++|.+... . +..+.++....+ . .+++.+||+|.|+|+.|++||+++|.|.|
T Consensus 738 ~~L~~~~~---~--------------~~~~~~~~~~~~--~----------~~~~~~~~~V~~d~~~s~~~t~~~v~~~D 788 (850)
T TIGR01693 738 DVLAGLAK---D--------------PDTISARRARRR--R----------LQHFAVPPRVTILNTASRKATIMEVRALD 788 (850)
T ss_pred HHHcCCCc---c--------------ccccccccCCcc--c----------ccCCCCCCeEEEccCCCCCeEEEEEEECC
Confidence 99987653 0 000100000000 0 15788999999999999999999999999
Q ss_pred CCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 278 RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 278 RpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
||||||+|+++|.++|++|++|||+|.|++++|+|||+
T Consensus 789 rpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~ 826 (850)
T TIGR01693 789 RPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVT 826 (850)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEE
Confidence 99999999999999999999999999999999999984
No 12
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.5e-27 Score=247.46 Aligned_cols=158 Identities=19% Similarity=0.261 Sum_probs=136.8
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCC-ChHHHHHHHHHHHHHHcCC
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVG-DQTRLSLMEEQLKNILRGC 203 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~ 203 (315)
.+.++|+|+++||||||++|+++|+.+|+||.+|+|+|++ |.++|+|+|++ ++|.++. +++++++|++.|.++|.++
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999999874 89999999999 8888854 4578999999999999886
Q ss_pred CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHH
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMF 283 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~ 283 (315)
.. . +..+..+.. +. .+++.++|.|.|+++.+.++|+|+|+|.||||||+
T Consensus 781 ~~---~--------------~~~~~~~~~--~~------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa 829 (895)
T PRK00275 781 DD---Y--------------PTIIQRRVP--RQ------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLA 829 (895)
T ss_pred Cc---c--------------chhhhhhhh--hh------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHH
Confidence 53 0 111111100 00 15678899999999999999999999999999999
Q ss_pred HHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 284 DIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 284 ~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
+|+++|..+|++|+.|||+|.|++|+|+|||+
T Consensus 830 ~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~ 861 (895)
T PRK00275 830 RIGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861 (895)
T ss_pred HHHHHHHHCCCEEEEeEEEecCCEEEEEEEEE
Confidence 99999999999999999999999999999994
No 13
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.8e-27 Score=247.18 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=135.8
Q ss_pred cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 123 ~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
.+..+.++|+|+++||||||++|+++|+.+|+||.+|+|+|+ +|.++|+|+|++ +.|.+ .+++.++++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence 556689999999999999999999999999999999999996 599999999999 77764 3568889999999998
Q ss_pred CCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCch
Q 021245 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKL 281 (315)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGL 281 (315)
++.. . .. +.++. .... .++|.+||+|.|+|+.+.++|+|+|.|.|||||
T Consensus 761 ~~~~---~--------------~~-~~~~~---~~~~----------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGL 809 (869)
T PRK04374 761 GDLQ---K--------------VR-PARRA---VPRQ----------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPGL 809 (869)
T ss_pred CCCC---c--------------cc-ccccc---Cccc----------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcH
Confidence 8653 0 00 10000 0000 167889999999999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 282 MFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 282 L~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
||+|+.+|+++|++|++|||+|.|++|+|+|||+
T Consensus 810 La~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~ 843 (869)
T PRK04374 810 LADVAHVLRMQHLRVHDARIATFGERAEDQFQIT 843 (869)
T ss_pred HHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEE
Confidence 9999999999999999999999999999999994
No 14
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=5.9e-27 Score=243.70 Aligned_cols=163 Identities=18% Similarity=0.263 Sum_probs=139.1
Q ss_pred eeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 120 VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 120 v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
+...+..+.++|+|+++||||||++|+++|+.+|+||.+|+|+|+ +|.++|+|+|.+ +.|. ...++++++|++.|.+
T Consensus 670 ~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 670 ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAE 747 (856)
T ss_pred EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHH
Confidence 445667789999999999999999999999999999999999986 589999999999 7766 4456789999999999
Q ss_pred HHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCC
Q 021245 199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR 278 (315)
Q Consensus 199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DR 278 (315)
+|.++.. . ..++.++. .+ . .++|.++++|.|+++.+.++|+|+|.|+||
T Consensus 748 ~l~~~~~---~--------------~~~~~~~~--~~--~----------~~~~~~~~~V~~~~~~~~~~T~i~V~a~Dr 796 (856)
T PRK03059 748 RLAEQAP---L--------------PEPSKGRL--SR--Q----------VKHFPITPRVDLRPDERGQYYILSVSANDR 796 (856)
T ss_pred HHcCCCC---c--------------chhhcccc--cc--c----------ccCCCCCceEEEEEcCCCCEEEEEEEeCCc
Confidence 9998754 0 11111100 00 0 267889999999999999999999999999
Q ss_pred CchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 279 pGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
||||++|+.+|+.+|++|++|||+|.|++|+|+|||.
T Consensus 797 pGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 797 PGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred chHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 9999999999999999999999999999999999983
No 15
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-26 Score=230.92 Aligned_cols=200 Identities=22% Similarity=0.263 Sum_probs=164.3
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCC
Q 021245 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (315)
Q Consensus 1 ~~~~Y~~~~~~~----h~~~~~~~--~~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g 73 (315)
+..+||.++++. |++++.++ ++|.|.+......+.++|+|+++|+|+||+.+|+.+...|+||++|.|+| .+|
T Consensus 644 ~~~~yflr~~~~~iawH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG 723 (867)
T COG2844 644 CYANYFLRHSARDIAWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG 723 (867)
T ss_pred ccccceeecCHHHHhHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence 467999999999 99999998 36888888877789999999999999999999999999999999999997 899
Q ss_pred EEEEEEEEEcCCCCCCCChh---HHHHHHHHHCCCCCCCCC----------cccCCceeeeecCCCceEEEEEEeCCccc
Q 021245 74 WFMDVFHVIDQQGKKITDGK---TIDYIEKALGPKGHITAG----------AKTWPSKQVGVHSVGDHTAIELIGRDRPG 140 (315)
Q Consensus 74 ~~~d~f~v~~~~g~~~~~~~---~~~~l~~~L~~~~~~~~~----------~~~~~~~~v~~~~~~~~t~i~i~~~Drpg 140 (315)
+++|+|+|.+++|.++..+. +...+.+++.+.-..|+. |..+|++.+.+..+...++++|.+.||||
T Consensus 724 ~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpG 803 (867)
T COG2844 724 YALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPG 803 (867)
T ss_pred ceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCccc
Confidence 99999999999998887432 223333333322212221 23445666677777889999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
||++++++|++++++|++|+|.|.|+++.|+|+|++ ..|.++. ++..+.+.+.|.+.+..
T Consensus 804 LLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 804 LLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALLP 863 (867)
T ss_pred HHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 8888885 44556666666666653
No 16
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.3e-26 Score=239.11 Aligned_cols=164 Identities=22% Similarity=0.237 Sum_probs=136.2
Q ss_pred eeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 119 QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 119 ~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.+..++ .+.++|+|+|+||||||++|+++|+.+|+||++|+|+|.+|.+.|+|+|++ +.|.+. .++++++.|.+
T Consensus 591 ~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~ 664 (774)
T PRK03381 591 EIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRR 664 (774)
T ss_pred EEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHH
Confidence 344556 799999999999999999999999999999999999998899999999999 777652 35889999999
Q ss_pred HHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCC
Q 021245 199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR 278 (315)
Q Consensus 199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DR 278 (315)
+|.+... ...++.++........ .++|..+++|.++|+.+.++|+|+|.|+||
T Consensus 665 ~L~~~~~-----------------~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~t~i~V~a~Dr 717 (774)
T PRK03381 665 ALDGDLD-----------------VLARLAAREAAAAAVP----------VRRPAAPPRVLWLDGASPDATVLEVRAADR 717 (774)
T ss_pred HHcCCCc-----------------hhhhhhcccccccccc----------cccCCCCcEEEEEECCCCCeEEEEEEeCCc
Confidence 9988543 0111111000000000 257889999999999999999999999999
Q ss_pred CchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 279 pGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
||||++|+++|+++|++|++|+|+|.|++|+|+|||+
T Consensus 718 pGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~ 754 (774)
T PRK03381 718 PGLLARLARALERAGVDVRWARVATLGADVVDVFYVT 754 (774)
T ss_pred hhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEE
Confidence 9999999999999999999999999999999999994
No 17
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.4e-26 Score=241.82 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=141.7
Q ss_pred eeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 119 QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 119 ~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
.+.+++..+.++|+|+++||||||++|+++|+.+|+||.+|+|+|+ +|.+.|+|+|++ ++|.+..+++++++|++.|.
T Consensus 723 ~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~ 801 (931)
T PRK05092 723 EVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIE 801 (931)
T ss_pred EEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHH
Confidence 3555667789999999999999999999999999999999999996 689999999999 78887767789999999999
Q ss_pred HHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC
Q 021245 198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD 277 (315)
Q Consensus 198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D 277 (315)
.++.+... . +..+.+.. ..... .++|.++|+|.|+|+.+.++|+|+|.|.|
T Consensus 802 ~~l~~~~~---~--------------~~~~~~r~---~~~~~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~D 852 (931)
T PRK05092 802 DALSGEVR---L--------------PEALAKRT---KPKKR---------ARAFHVPPRVTIDNEASNRFTVIEVNGRD 852 (931)
T ss_pred HHHcCCCC---C--------------cccccccc---Ccccc---------ccCCCCCCEEEEeeCCCCCeEEEEEEECC
Confidence 99987643 0 00111100 00000 15788999999999999999999999999
Q ss_pred CCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 278 RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 278 RpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
|||||++|+++|+++|++|++|+|+|.|++|+|+|||+
T Consensus 853 rpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~ 890 (931)
T PRK05092 853 RPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890 (931)
T ss_pred cCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEe
Confidence 99999999999999999999999999999999999984
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1e-25 Score=232.41 Aligned_cols=173 Identities=21% Similarity=0.228 Sum_probs=146.7
Q ss_pred CCCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245 21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (315)
Q Consensus 21 ~~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (315)
..|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.++.|.+...+++.+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 56788888888 89999999999999999999999999999999999999999999999999988876555667888888
Q ss_pred HHCCCCCCCC---C------------cccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245 101 ALGPKGHITA---G------------AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (315)
Q Consensus 101 ~L~~~~~~~~---~------------~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~ 165 (315)
+|.+...... . +..++.+.++++.+.++|+|+|+++||||||++|+++|+++|+||++|+|+|.+
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 8887532100 0 111223345567777899999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 166 RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 166 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
+++.|+|+|++ ++|.++.++ ++.|+++|.
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 99999999999 899998754 677777764
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=1.1e-20 Score=138.69 Aligned_cols=48 Identities=65% Similarity=1.093 Sum_probs=47.0
Q ss_pred eeEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 268 ~tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
||+|||.|+|||||||+|+++|.++|++|++|||+|.||+|+|+|||+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~ 48 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIR 48 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEE
Confidence 799999999999999999999999999999999999999999999995
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=1.2e-19 Score=132.16 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=46.9
Q ss_pred eeEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 268 ~tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
||+|||.|+|||||||+|+++|+++|++|++|||+|.|++|+|+|||+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~ 48 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVT 48 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEE
Confidence 689999999999999999999999999999999999999999999994
No 21
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.77 E-value=5.7e-18 Score=124.26 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=70.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
+|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.++.++++.+.|++.|.++|..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 8999999998999999999998864
No 22
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=1.7e-18 Score=127.00 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=45.3
Q ss_pred eEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEE--ecCCeeEEEEee
Q 021245 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS--SDGPHASQVRVL 314 (315)
Q Consensus 269 tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~--T~g~~a~D~F~v 314 (315)
|++||+|+|||||||+|+++|+++|++|++|||+ |.|++|+|+|||
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv 48 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV 48 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence 6899999999999999999999999999999999 999999999998
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.73 E-value=2.8e-17 Score=119.74 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=65.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999999999999999 89999988888888988874
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=1.7e-16 Score=116.51 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=67.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~--t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
|.++|.++||||||++|+++|+++|++|+.|+|. |.|+++.|+||| + .+|.++.++++.+.|+++|.++|..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999 999999999999 7 7888898888999999999988753
No 25
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=4.8e-16 Score=114.68 Aligned_cols=73 Identities=58% Similarity=0.945 Sum_probs=67.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCC-CCcCCChHHHHHHHHHHHHHHcC
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTT-CRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
|+|+|+++||||||++|+++|+++|+||++|+++|.++++.|+|+|++ ++ +.++.+++++++|++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999999999999999 76 77777788999999999988864
No 26
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=9.9e-16 Score=112.69 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=65.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
++|+|+++||||||++++++|+.+|+||++|+|+|+ ++++.|+|+|++ +++.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999998 599999999999 88888777788999999997754
No 27
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=5.5e-15 Score=109.59 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=64.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
.++|+++||||||++++++|+++|+||++|+|+| .++++.|+|+|++ +++. ..+++++++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 5799999999999 7666 45567899999999998864
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.59 E-value=4e-14 Score=122.59 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245 32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (315)
Q Consensus 32 ~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 111 (315)
...+.+|++.|+||||+++.++++|+++||||.+.++...+|.|.-.+.|. +.+ .....|+..|........
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~- 76 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELD- 76 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcC-
Confidence 447889999999999999999999999999999999999999888777773 332 246677777765432111
Q ss_pred cccCCceeee------ecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC--e----EEEEEEEEeCCC
Q 021245 112 AKTWPSKQVG------VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--R----IACVLYVNDDTT 179 (315)
Q Consensus 112 ~~~~~~~~v~------~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~--~----~~d~F~V~~~~~ 179 (315)
....+. .......+.++|++.||||++++++++|+++|+||.+.+..|.+. . ..-.|.+.- |.
T Consensus 77 ----L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~l-P~ 151 (190)
T PRK11589 77 ----LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHS-PA 151 (190)
T ss_pred ----eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEc-CC
Confidence 011110 011112489999999999999999999999999999988887653 2 333444444 32
Q ss_pred CCcCCChHHHHHHHHHHHHHH
Q 021245 180 CRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 180 g~~~~~~~~~~~l~~~L~~~L 200 (315)
+. .++.|+++|.+..
T Consensus 152 ~~------~~~~L~~~l~~l~ 166 (190)
T PRK11589 152 SQ------DAANIEQAFKALC 166 (190)
T ss_pred CC------CHHHHHHHHHHHH
Confidence 22 2467777775433
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.5e-14 Score=106.41 Aligned_cols=69 Identities=29% Similarity=0.483 Sum_probs=62.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
++|.|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999985 799999999999888887777778888887754
No 30
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=6.3e-14 Score=103.34 Aligned_cols=69 Identities=30% Similarity=0.447 Sum_probs=61.7
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCC-CCCCCChhHHHHHHHHHCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ-GKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~-g~~~~~~~~~~~l~~~L~~ 104 (315)
+.|.|+++||||||++|+++|+.+||||++|+|+|.+|+++|+|+|.+++ |.++.+++.+++|++.|..
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999987 7777676677777777654
No 31
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.52 E-value=2e-13 Score=138.77 Aligned_cols=127 Identities=15% Similarity=0.097 Sum_probs=108.3
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCCc
Q 021245 129 TAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED 207 (315)
Q Consensus 129 t~i~i~~-~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 207 (315)
-.++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.....|.|.. ..|.+. ++ ..+++.+..++.+..+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~-- 618 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELP-- 618 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCC--
Confidence 5777777 9999999999999999999999999999 888899999998 777763 34 6788888888887765
Q ss_pred cccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHHh
Q 021245 208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC 287 (315)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~~ 287 (315)
. + ...||+|.+.. +++||++.||||||+.|++
T Consensus 619 ---------------~---~------------------------~~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~ 650 (693)
T PRK00227 619 ---------------D---P------------------------APGITATFWHG------NILEVRTEDRRGALGALLG 650 (693)
T ss_pred ---------------c---c------------------------cCCCCceEeeC------cEEEEEeCccccHHHHHHH
Confidence 0 0 01246677764 7999999999999999999
Q ss_pred hhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245 288 TLTDMQYVVFHAAISSDGPHASQVRVLE 315 (315)
Q Consensus 288 ~l~~~~i~I~~AkI~T~g~~a~D~F~v~ 315 (315)
+|. +|.+|+++|.|..+.|+||+.
T Consensus 651 ~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 651 VLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred Hhh----hhhhHhhcCCCcceEEEEEec
Confidence 999 899999999999999999984
No 32
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.51 E-value=1.8e-13 Score=118.50 Aligned_cols=137 Identities=13% Similarity=0.179 Sum_probs=100.2
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
...+.+|+++|+||||+.+.|+++|+++||||.+.+....++....++.|+. .+ ..++.|+..|.. +....
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~----~~~~~le~~L~~-l~~~~ 75 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SW----NAITLIESTLPL-KGAEL 75 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----Ch----hHHHHHHHHHHh-hhhhc
Confidence 3477899999999999999999999999999999999999999999999976 22 356788887743 33222
Q ss_pred CCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHH
Q 021245 205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD 284 (315)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~ 284 (315)
. |...+.+... .. +. ..... ..++|.+.||||++++
T Consensus 76 ~---------------------L~i~v~~~~~-------------~~---~~------~~~~~-~~v~v~G~DrPGIV~~ 111 (190)
T PRK11589 76 D---------------------LLIVMKRTTA-------------RP---RP------AMPAT-VWVQVEVADSPHLIER 111 (190)
T ss_pred C---------------------eEEEEEeccc-------------cc---cc------cCCce-EEEEEEECCCCCHHHH
Confidence 2 0000000000 00 00 00012 4567999999999999
Q ss_pred HHhhhcCCceEEEEEEEEecCC--eeEEEEee
Q 021245 285 IVCTLTDMQYVVFHAAISSDGP--HASQVRVL 314 (315)
Q Consensus 285 I~~~l~~~~i~I~~AkI~T~g~--~a~D~F~v 314 (315)
|+++|+++|+||..-+-.|.+. ...+.|..
T Consensus 112 vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 112 FTALFDSHHMNIAELVSRTQPAEGERPAQLHI 143 (190)
T ss_pred HHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence 9999999999999999999984 66666643
No 33
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.50 E-value=2.5e-13 Score=100.64 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=58.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.+.|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..+++.+++|++.|...
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~ 70 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAV 70 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999997 89999999999998776 44455666677666543
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.48 E-value=3.5e-13 Score=96.97 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=54.8
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L 102 (315)
.+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.. +..+.+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence 57999999999999999999999999999999996 799999999999987763 123445555544
No 35
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.45 E-value=8.2e-13 Score=95.07 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=55.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
.+|+|+++||||||++++++|+.+|+||++|+|+|+ +|.++|+|+|.+ .+|.- -+.++++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccc------hHHHHHHHHHhh
Confidence 579999999999999999999999999999999987 589999999999 65532 245666666655
No 36
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.40 E-value=3.1e-12 Score=93.79 Aligned_cols=67 Identities=28% Similarity=0.444 Sum_probs=60.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
+.++|+++||||+|++|+++|+++|+||.+|+++|.++.+.|+|+|++ +++.++ ++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence 689999999999999999999999999999999998889999999999 788876 5678888887774
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=6.7e-12 Score=91.99 Aligned_cols=69 Identities=30% Similarity=0.567 Sum_probs=62.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
+.|+|.++|+||+|++|+++|+++|+||++|.++|.+++++|+|+|.+.++.+. +++.+++|++.|...
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~~ 70 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGPA 70 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999998889999999999888876 566888899988753
No 38
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.5e-11 Score=89.10 Aligned_cols=70 Identities=36% Similarity=0.536 Sum_probs=63.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
|.+.|+++|+||+|++|+++|+++|+||.++++.+.++.+.|+|++++ +++.+ .+.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~-~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQP-LDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCc-CCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998889999999999 88888 45678899999987653
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.33 E-value=3e-11 Score=123.00 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=121.4
Q ss_pred EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245 36 TVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (315)
Q Consensus 36 ~~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 114 (315)
..++|.. +|++|++.+++++|+.+|++|++|++.+ +|.++..|.|....|.++.+..+.+.++.++.+.+..+. .
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 5778887 9999999999999999999999999999 888889999999999988888899999999988876431 2
Q ss_pred CCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHH
Q 021245 115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE 194 (315)
Q Consensus 115 ~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~ 194 (315)
.++..+.+. ++++|.+.||+|+|+.++++|. .|..|++.|.|..+.|.|++.+ . . ....++.
T Consensus 623 ~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-~---~-----~r~~~~~ 684 (693)
T PRK00227 623 GITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-G---F-----DRATVER 684 (693)
T ss_pred CCCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-c---c-----cHHHHHH
Confidence 233333332 7999999999999999999998 8899999999999999999986 1 1 2356777
Q ss_pred HHHHHHcC
Q 021245 195 QLKNILRG 202 (315)
Q Consensus 195 ~L~~~L~~ 202 (315)
.+..+|.+
T Consensus 685 ~~~~~~~~ 692 (693)
T PRK00227 685 DVTRVLAG 692 (693)
T ss_pred HHHHHHhc
Confidence 77777654
No 40
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.28 E-value=4e-11 Score=99.97 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=113.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC-
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG- 111 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~- 111 (315)
..+.+|++++.||||+...+++...++||||.++++...|+.+.-+..+. |.| +-..++|..|.........
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCeE
Confidence 35689999999999999999999999999999999999998887666665 443 4678888888765431110
Q ss_pred ---cccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCCh
Q 021245 112 ---AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQ 186 (315)
Q Consensus 112 ---~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~ 186 (315)
.+..++.. ......+.+.|.+.||||++.+++.+|..+|+||.+....|.. +.-...|..+- .-+-|..
T Consensus 76 v~m~rt~~~~~---~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~-- 149 (176)
T COG2716 76 VVMKRTGAHPT---PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN-- 149 (176)
T ss_pred EEEeecCCCcc---CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--
Confidence 01111110 2344668899999999999999999999999999988887753 44555666665 4344532
Q ss_pred HHHHHHHHHHHHH
Q 021245 187 TRLSLMEEQLKNI 199 (315)
Q Consensus 187 ~~~~~l~~~L~~~ 199 (315)
-.+..|++++.+.
T Consensus 150 ~~i~~l~~~f~al 162 (176)
T COG2716 150 LSISALRDAFEAL 162 (176)
T ss_pred CcHHHHHHHHHHH
Confidence 2457788888543
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.17 E-value=2.8e-10 Score=82.39 Aligned_cols=68 Identities=35% Similarity=0.561 Sum_probs=60.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
+.|.|.++|+||+|++|+++|+++|++|.++++.+.++++++.|++.+.+|.+ .+++.+++|++.|..
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~ 68 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGE 68 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999778999999999988887 345678888888754
No 42
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.15 E-value=8.7e-11 Score=97.97 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=94.1
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCC
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDD 205 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 205 (315)
.++.+|++++.||||+...|++...++|||+.++|+...|+.+.-+..++. .| +...+|+..| ..+..+.+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s~----dav~~le~~l-~~l~~~~~ 73 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----SW----DAVTLLEATL-PLLGAELD 73 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----CH----HHHHHHHHHh-hcccccCC
Confidence 467899999999999999999999999999999999999999988888887 23 5667888888 44554443
Q ss_pred CccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHH
Q 021245 206 EDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDI 285 (315)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I 285 (315)
|.-.|.+.... ++ . ...--..++|.+.||||++.++
T Consensus 74 ---------------------L~v~m~rt~~~--------------------~~--~-a~~~~v~v~v~a~DrpgIv~~~ 109 (176)
T COG2716 74 ---------------------LLVVMKRTGAH--------------------PT--P-ANPAPVWVYVDANDRPGIVEEF 109 (176)
T ss_pred ---------------------eEEEEeecCCC--------------------cc--C-CCCceEEEEEEecCCccHHHHH
Confidence 11122111110 00 0 1112234668999999999999
Q ss_pred HhhhcCCceEEEEEEEEec
Q 021245 286 VCTLTDMQYVVFHAAISSD 304 (315)
Q Consensus 286 ~~~l~~~~i~I~~AkI~T~ 304 (315)
++.|.++|++|.+..-.|.
T Consensus 110 T~lf~~~~inie~L~~~~~ 128 (176)
T COG2716 110 TALFDGHGINIENLVSRTY 128 (176)
T ss_pred HHHHHhcCCchhhceeeee
Confidence 9999999999988766654
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.03 E-value=3.2e-09 Score=76.40 Aligned_cols=69 Identities=39% Similarity=0.615 Sum_probs=60.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
+.+.|.++|+||+|++|+++|+++|++|.++.+.+.++...+.|.+.+ +++.. .+++++++|++.|...
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCc-CCHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999998778999999998 66665 3457888999988654
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.87 E-value=2.3e-08 Score=71.90 Aligned_cols=67 Identities=40% Similarity=0.612 Sum_probs=57.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
.|.|.++|+||+|++++++|+++|++|.++.+++.+++..+.|++..+++.. .+++..++|++.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999998666999999999877665 344677888887754
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.73 E-value=1.5e-07 Score=69.53 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=54.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
+..|++.|+||||+++.++++|+++|+||.+.+..+.++....++.|.. + ++..++++++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI-P-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE-S-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe-C-------cccHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999988 3 34668888888654
No 46
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.68 E-value=7.9e-08 Score=66.62 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=46.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ 84 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~ 84 (315)
++|+|.|||+.||-+++|+++.++|++|..+++.|+|.|.+-.|+|...
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence 4799999999999999999999999999999999999999999999864
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.64 E-value=3.4e-07 Score=67.65 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=50.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
...|++.|+||||+++.++++|+++|+||.+.++.+.+|.+.-.+.|.-+ ++..++|++.|..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE 64 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999888888643 2345666666644
No 48
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.53 E-value=6.7e-07 Score=66.23 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=42.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~ 82 (315)
..|++.|+||||+.+.+++.|+++|+||.+.+.+..+|++.-.+.+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~ 48 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence 67899999999999999999999999999999999888886656555
No 49
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.50 E-value=1.7e-06 Score=61.23 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=46.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~--~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
+.|.+.++||||+|++++++|+++|+||..+...+.++ .....+...+ ....+.+.++|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57889999999999999999999999999999999875 3344444443 1234555566644
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.47 E-value=8.9e-07 Score=65.14 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=51.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
.++|.|+||||+.++++++|+++|+||.+.+..+.++.....+.+.- +.+. ..+.++++|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~-p~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI-PDSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc-CCCC------CHHHHHHHHHHHH
Confidence 37899999999999999999999999999998888888888888877 4331 2367777775433
No 51
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.46 E-value=2.2e-06 Score=67.28 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=84.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTW 115 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 115 (315)
-+|.|+..|+||-|+..+.+|.+.|+||..-.|.-.+.+-+-.+.|..+ + .-.++|.+...
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d----~A~~~Lee~gF-------- 64 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D----EAHSVLEEAGF-------- 64 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H----HHHHHHHHCCc--------
Confidence 3688999999999999999999999999988777555544445555322 1 11334544321
Q ss_pred CceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 116 ~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.+. ..-++-|..+|+||-|++|+.+|.++++|+.++..+++. ..++-+|.+.+
T Consensus 65 -~Vr-------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 65 -TVR-------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred -EEE-------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 111 224778899999999999999999999999999999875 56666666554
No 52
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.42 E-value=2.2e-06 Score=63.49 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=50.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
+.+++.|+||||+.++|+++|+++|+||.+.+.++.++.......+.. + + ...+.|++.|.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~---~----~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S---W----DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c---c----ccHHHHHHHHHH
Confidence 678999999999999999999999999999999998888776666665 2 1 123677777754
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.37 E-value=3e-06 Score=59.94 Aligned_cols=48 Identities=31% Similarity=0.402 Sum_probs=39.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCC--EEEEEEEEEc
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGG--WFMDVFHVID 83 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g--~~~d~f~v~~ 83 (315)
+.|.|.++||||+|++++++|+++|+||..+.+.+.++ +.+..+...+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~ 50 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD 50 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence 46889999999999999999999999999999998544 4544444443
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=2.7e-06 Score=62.60 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=43.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQG 86 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g 86 (315)
.|+|.|+||||+.++++++|+++|+||.+.+..+.++.+.-.+.+.-+.+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 37899999999999999999999999999998888888777787775544
No 55
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.18 E-value=6.9e-06 Score=62.29 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=52.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+++.|+||||++++|+++|+++|+||.+.+-.+.++.....+.+.. +. .. ...+.|++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~-~~-~~----~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI-SE-SN----LDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe-CC-CC----CCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988777777777776 32 01 12467777775533
No 56
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.10 E-value=2.5e-05 Score=57.93 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=47.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN------RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~------~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
++++.|+|+||++++|+++|+++|+||.+.+..+.+ +.....+.+.- +.+ .....+++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-p~~------~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-PAG------TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-CCC------CCHHHHHHHHHH
Confidence 378999999999999999999999999999999876 44444555554 321 124677777754
No 57
>PRK00194 hypothetical protein; Validated
Probab=98.08 E-value=1.7e-05 Score=60.27 Aligned_cols=65 Identities=22% Similarity=0.405 Sum_probs=50.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.+.+++.|+||||++++++++|+++|+||.+.+-.+.++...-.+.+.- +. .+. ..+.+++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~-~~-~~~----~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI-SE-SKK----DFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe-cC-CCC----CHHHHHHHHHH
Confidence 5789999999999999999999999999999998887777666666655 31 111 23667777754
No 58
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.05 E-value=3.3e-05 Score=57.22 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=40.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC------CEEEEEEEEEcC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG------GWFMDVFHVIDQ 84 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~------g~~~d~f~v~~~ 84 (315)
+|+|.|+|+||++++|++.|+++|+||.+.+..+.+ +.+.-.+.+.-+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 378999999999999999999999999999998855 556555666544
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=1.6e-05 Score=60.20 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=42.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ 84 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~ 84 (315)
..|++.|+|+||+++.++++|+++|+||.+.+.++.++.+.-.+.+.-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 4789999999999999999999999999999998877777666666533
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=3.9e-05 Score=56.04 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=43.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.|++.|+||||++++|+++|+++|+||.+.+..+.. +.....+.+.. +.+ . -..+.|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~-~~~-~----~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL-EGF-D----LSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe-CCC-C----CCHHHHHHHHHH
Confidence 378999999999999999999999999999998742 33222233333 111 0 124677777754
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=98.02 E-value=0.0002 Score=66.09 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=67.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 114 (315)
.|+|.|+|+||+.+.+++.|+++|+||.+.+.+.. +|++.-.+.+.-+ +...+.+.+.+.++.++...+..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l------ 74 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEM------ 74 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCC------
Confidence 58999999999999999999999999999999984 4777655555533 22222233444444423332221
Q ss_pred CCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 021245 115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (315)
Q Consensus 115 ~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~ 162 (315)
..++.... ....|-|.+--+--=|..|........++..=+-+.
T Consensus 75 --~i~l~~~~--~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vi 118 (280)
T TIGR00655 75 --TWELILAD--KLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVI 118 (280)
T ss_pred --EEEEecCC--CCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEE
Confidence 11222211 122333333334445666666666555554333333
No 62
>PRK00194 hypothetical protein; Validated
Probab=98.01 E-value=2.6e-05 Score=59.22 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=41.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~ 82 (315)
...|++.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 578999999999999999999999999999988888777776555554
No 63
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=5.9e-05 Score=55.13 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=32.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.|+|.|+||||++++|++.|+++|+||.+.+.++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 3789999999999999999999999999999986
No 64
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.97 E-value=0.00017 Score=66.71 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=38.9
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--eeCCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS--SDGGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~--t~~g~~~d~f~v~ 82 (315)
....|+|.|+||||+.+.+++.|+++|+||.+.+.+ +..+.++-.+.+.
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 456899999999999999999999999999999997 3334443333333
No 65
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=6.6e-05 Score=52.27 Aligned_cols=67 Identities=18% Similarity=0.341 Sum_probs=57.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
++|+|.++|+.||=.++++++-+.|++|..+.+.|.|....-+|.|.. .. ..+ +-+|..|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~~-~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-RP-PSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-CC-CCC--cccHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999987 32 222 35899999988653
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.82 E-value=0.00028 Score=52.26 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=49.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
.+.|.|.+.||||+|++|+.++++.|+||.+.++.+ .++.+.-.|.+.- .+.+.++.|.+.|..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999987 4778777777753 223456777777765
No 67
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.76 E-value=0.0003 Score=52.09 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=46.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L 196 (315)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.+.- .+.+.++.+-+.|
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L 69 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999985 466766676655 1245665555555
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.72 E-value=0.0009 Score=61.96 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=42.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~ 82 (315)
....|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.-.+.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~ 55 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE 55 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence 4678999999999999999999999999999999998 777655444543
No 69
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.69 E-value=0.0016 Score=60.19 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=41.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQ 84 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~ 84 (315)
....|+|.|+||||+.+++++.|+++|+||.+.+.++ .++.+.-.+.+..+
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p 58 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE 58 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence 3568999999999999999999999999999999885 45566545555433
No 70
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.68 E-value=0.00086 Score=52.92 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=68.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCCccc
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSE 209 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~ 209 (315)
+|.|...++||-|+..+..|+++|+||..-.|.-.++.-.--..|.. | ... .+.|.+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~-----~---d~A----~~~Lee----------- 61 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR-----P---DEA----HSVLEE----------- 61 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC-----h---HHH----HHHHHH-----------
Confidence 67889999999999999999999999988777665554443344433 1 111 122211
Q ss_pred cccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHHhhh
Q 021245 210 KVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTL 289 (315)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~~~l 289 (315)
++|. |.+.+ |+-|...|+||=|..|+.+|
T Consensus 62 ----------------------------------------~gF~----Vr~~d-------VlaVEmeD~PG~l~~I~~vl 90 (142)
T COG4747 62 ----------------------------------------AGFT----VRETD-------VLAVEMEDVPGGLSRIAEVL 90 (142)
T ss_pred ----------------------------------------CCcE----EEeee-------EEEEEecCCCCcHHHHHHHH
Confidence 1111 22232 77788999999999999999
Q ss_pred cCCceEEEEEE
Q 021245 290 TDMQYVVFHAA 300 (315)
Q Consensus 290 ~~~~i~I~~Ak 300 (315)
.+.++|+.++-
T Consensus 91 ~d~diNldYiY 101 (142)
T COG4747 91 GDADINLDYIY 101 (142)
T ss_pred hhcCcCceeee
Confidence 99999987753
No 71
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.67 E-value=6.6e-05 Score=56.48 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=49.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+|+|.|+||||+.+.++++|+++|+||.+-.=.-..+..-..+.|.- +.. ......++.+|.+..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~-~~~-----~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI-SKE-----VVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC-ChH-----hccHHHHHHHHHHHH
Confidence 4689999999999999999999999999998654444566666777765 211 123466777775544
No 72
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.59 E-value=0.00081 Score=48.70 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=47.2
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
|.|.++|+||+|++|+.++++.|.||.+....+ .+|.+...|.+.-. +...++.+.+.|...
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhcC
Confidence 678999999999999999999999999888766 35776666666422 234566777776553
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.0011 Score=48.06 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=45.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
+.|.+.||||+|++|+.++++.|+||.+....+.. +.+...|.+.- .+.++++.+.+.|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHh
Confidence 67899999999999999999999999998887654 56655666654 12346666666663
No 74
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00032 Score=63.03 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=41.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~ 82 (315)
....+++.|+|++|+.+.|++.|++.||||.+++.++ .+|+++-.....
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~ 56 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE 56 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe
Confidence 5679999999999999999999999999999999997 357765443333
No 75
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.49 E-value=0.00082 Score=62.21 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=50.0
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
....|++.|+||||+.+.|+++|+++|+||.+.+..+ .++.....+.+.- +..+ ..++.|+++|.+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~ 72 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAA 72 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHH
Confidence 5678999999999999999999999999999999998 6665444444433 1112 235778887754
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.45 E-value=9.2e-05 Score=55.70 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=40.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~ 82 (315)
...|||.+.||||+.+.++++|+++|.||++-+.+-.+|++--.+.|.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 468999999999999999999999999999666655777776555554
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.37 E-value=0.00073 Score=62.58 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~--t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
...+|+|.|+||||+.+.|+++|+++|+||.+.+-+ +..+.....+.+.+ .....+ ..+.|+++|.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~ 76 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQP 76 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHH
Confidence 356899999999999999999999999999999987 33344444433443 111111 23566776654
No 78
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.35 E-value=0.0011 Score=61.18 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=48.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.|++.|+||||+.+.|+++|+++|+||.+.+-++. ++.....+.+.. +. ..+ ..+.|+++|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~-~~-~~~----~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL-EG-FRL----EESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe-CC-CCC----CHHHHHHHHHH
Confidence 58999999999999999999999999999998885 366666666665 32 121 23566766655
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.31 E-value=0.0015 Score=60.56 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=48.8
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
....++|.|+||||+.++++++|+++|+||.+.+..+.. +.....+.+.. +.+. ..+.|+++|.+.
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~-p~~~------~~~~L~~~L~~l 73 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS-EEGL------DEDALRAGFAPI 73 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec-CCCC------CHHHHHHHHHHH
Confidence 357899999999999999999999999999999988542 44444555554 2221 246677777553
No 80
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.0031 Score=44.72 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=41.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
+.|.++|+||+|++|+.+|+++|+||.+...... .+...-.|.+.. .+.+.++.+.+.|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHH
Confidence 3578899999999999999999999998776543 233444444443 12345555655553
No 81
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.28 E-value=0.0019 Score=47.04 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
.+.|.+.||+|++++|+.++++.|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999998775
No 82
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.22 E-value=0.0013 Score=45.03 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=39.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
+.+..+|+||.+++++..|.++|+||.+..+...+ +...-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35789999999999999999999999999988765 66766776654
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.004 Score=44.18 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=41.8
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-----~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
+.|.++|+||+|++++.+|++.|+||.+...... .+.....|.+... +....+.+.+.|..
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 3578899999999999999999999997776542 3555444444321 12334566666544
No 84
>PRK07431 aspartate kinase; Provisional
Probab=97.04 E-value=0.14 Score=52.15 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=114.1
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC-
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT- 109 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~- 109 (315)
+...|.|.+. +.+|+.+++..+|.+.|++|.... + .+.. -.|.|...+. ++..+.|.+.+.......
T Consensus 347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~~d~-----~~av~~Lh~~f~~~~~~~~ 417 (587)
T PRK07431 347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDAEDG-----DKALRAVCEAFELEDSQIE 417 (587)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcHHHH-----HHHHHHHHHHhccCCcccc
Confidence 6778888886 899999999999999999997444 3 2222 2455543211 245666776664433211
Q ss_pred --C-CcccCCceeee-ecCCCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEe-eCC--eEEEEEEEEeCCCCC
Q 021245 110 --A-GAKTWPSKQVG-VHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNR--RIACVLYVNDDTTCR 181 (315)
Q Consensus 110 --~-~~~~~~~~~v~-~~~~~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~--~~~d~F~V~~~~~g~ 181 (315)
+ .....-. .+. .....+...|++. .++++|+++++.+.|+++|++|..-.... .++ ..--.|.+..
T Consensus 418 ~~~~~~~~~~~-~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 418 INPTASGQDEP-EVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred cCccccCCCCC-cEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 1 0010000 111 1223345555554 56889999999999999999998543221 121 2223344432
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEe
Q 021245 182 AVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVE 261 (315)
Q Consensus 182 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~ 261 (315)
....+..+.+.+ |....+ ...+.+.
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------------~~~i~~~ 516 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------------GAEVEDG 516 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceEEEe
Confidence 122222222221 221111 0123333
Q ss_pred ecCCCCeeEEEEEeC---CCCchHHHHHhhhcCCceEEEEEE
Q 021245 262 RLEDKGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 262 ~~~~~~~tvieV~a~---DRpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
.+++++.|.+. .+||++.++.++|.+.|++|+...
T Consensus 517 ----~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 517 ----PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred ----CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 35788888876 889999999999999999997655
No 85
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0031 Score=44.80 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=37.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEE
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~ 175 (315)
..+.|..+|+||.|++++..|+++|+||.+..++..++. .++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 467889999999999999999999999999988776553 444443
No 86
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.02 E-value=0.0043 Score=46.41 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=46.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
-.+.+...|+||+|++|++.|+..|+||.+-.+.... +-...++.+.. | ++..++++.+.|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence 3688999999999999999999999999998887543 34445555541 1 23466777777744
No 87
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.01 E-value=0.0027 Score=43.47 Aligned_cols=46 Identities=26% Similarity=0.293 Sum_probs=38.1
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEc
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVID 83 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~ 83 (315)
|.+..+|+||.+++++..|.+.|+||....++..+ +..+-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45789999999999999999999999999887644 66766666643
No 88
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.008 Score=42.84 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=32.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
..+.+..+|+||.|+++++.|+++|+||.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 467889999999999999999999999998877665
No 89
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.99 E-value=0.0059 Score=52.23 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=46.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+.+.+.|+||+|++|+++|+.+|+||.+-.+... .+....++.+.. + +..+++|++.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~---~-----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG---D-----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC---C-----HHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999998753 244444444433 1 223567777775544
No 90
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0077 Score=43.61 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=44.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChH-HHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQT-RLSLMEEQLK 197 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~-~~~~l~~~L~ 197 (315)
.+.+.+.|+||++++|++.|+++|+||......+.. +.+.-.|.+.. . +.+ .++++-+.|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v-~------~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT-S------TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc-C------chHHHHHHHHHHHh
Confidence 578999999999999999999999999988765543 55555566654 1 123 5566666663
No 91
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.95 E-value=0.0064 Score=46.66 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=45.9
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.....|.+...|+||+|++|++.|+..|.||.+-.+.-.. +....++.+.+ ++.++++.+.|.+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~---------~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND---------DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC---------chHHHHHHHHHhC
Confidence 3456789999999999999999999999999998876543 22333333321 2356777777744
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.92 E-value=0.0069 Score=44.61 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=44.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
..+.+...|+||+|++++++|+..|.||.+..+.-.. +....++.+.+ ++..+++|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence 4688999999999999999999999999988876433 33344444433 13456677777643
No 93
>PRK07431 aspartate kinase; Provisional
Probab=96.87 E-value=0.11 Score=53.00 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=109.2
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceee
Q 021245 42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120 (315)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v 120 (315)
..+.+|++++|...|++.|+||.-..... .++..--.|.+...+- +...+.|++ +...+.. ..+
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~---------~~i 342 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGG---------AEV 342 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCC---------CcE
Confidence 46889999999999999999999554433 2332333577643211 111122222 2211110 011
Q ss_pred eecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 121 GVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 121 ~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
. ...+...|.+.+. ++||+++++.++|++.|++|.... + ....-.|.|.. +..++.-+.|+
T Consensus 343 ~--~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh 406 (587)
T PRK07431 343 L--VETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVC 406 (587)
T ss_pred E--EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHH
Confidence 1 1235677888875 799999999999999999996443 2 22333444443 12344445566
Q ss_pred HHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEE-eC
Q 021245 198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK-CR 276 (315)
Q Consensus 198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~-a~ 276 (315)
+.+..... ...+...+.+ .. -..=+-|.. ..+...+.|. ..
T Consensus 407 ~~f~~~~~------------------~~~~~~~~~~-~~---------------~~~v~gIa~----~~~~~~i~l~~~~ 448 (587)
T PRK07431 407 EAFELEDS------------------QIEINPTASG-QD---------------EPEVRGVAL----DRNQAQLAIRNVP 448 (587)
T ss_pred HHhccCCc------------------ccccCccccC-CC---------------CCcEEEEEc----cCCEEEEEECCCC
Confidence 66543322 0001111000 00 000011222 2456677665 56
Q ss_pred CCCchHHHHHhhhcCCceEEEEEEE
Q 021245 277 DRAKLMFDIVCTLTDMQYVVFHAAI 301 (315)
Q Consensus 277 DRpGLL~~I~~~l~~~~i~I~~AkI 301 (315)
+.||++++|...|+++|++|.+-.-
T Consensus 449 ~~~g~~a~if~~l~~~~i~id~i~~ 473 (587)
T PRK07431 449 DRPGMAASIFGALAEANISVDMIVQ 473 (587)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEe
Confidence 8899999999999999999998754
No 94
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0052 Score=43.65 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=34.1
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~ 74 (315)
..++|..+|+||.|++++..|.+.|+||....++..++.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 367899999999999999999999999998888765443
No 95
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.012 Score=42.58 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=45.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
.+.|.++|+||++++|+..|+++|.||......+ .+|.+--.|.+...+. +..+++|.+.|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhc
Confidence 5789999999999999999999999999777655 3465555566643211 1245666666655
No 96
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.80 E-value=0.016 Score=40.88 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=42.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
.+.+.+.|+||++++|+.+|+++|++|.+....+. + +.+.-.|.+.. .+ ..++.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-------DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-------CH-HHHHHHHHHHh
Confidence 36788999999999999999999999999988765 3 33433444432 12 34555555553
No 97
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.79 E-value=0.011 Score=41.56 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=37.4
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHV 81 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v 81 (315)
+.|.++|++|++++++.+|++.|+||.+..+... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 5789999999999999999999999999888764 3666656666
No 98
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.014 Score=42.00 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=31.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
.+.+.+.|+||++++++++|+++|+||......+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 46788999999999999999999999998887654
No 99
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.74 E-value=0.012 Score=49.55 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=48.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+.|...|+||.|++|++.|+++|+||.+.-+...+ +...-++.|.. ++..++++.+.|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence 3688999999999999999999999999988877554 44555566543 1346677777775544
No 100
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0083 Score=54.12 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=34.8
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t 163 (315)
..+++++.|+|+||+.+.|++.|+++|+||.++.=++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 5689999999999999999999999999999999885
No 101
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.70 E-value=0.0061 Score=42.86 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=38.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEE
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVN 175 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~ 175 (315)
+.+.+.|+||++++|+++|+++|+||.+......+ +...-.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~ 48 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD 48 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence 57889999999999999999999999999988754 5565666663
No 102
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.67 E-value=0.0075 Score=43.89 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=33.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~ 74 (315)
.|.|.+.||+|++++|+.++++.|.||....+.+. +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47899999999999999999999999999988765 44
No 103
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.017 Score=40.79 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=37.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
++.+.++|+||.|++++..|+++++||.+....+.+ +...-.|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 49 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG 49 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence 578899999999999999999999999988877653 44444444443
No 104
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.59 E-value=0.02 Score=48.43 Aligned_cols=64 Identities=14% Similarity=0.357 Sum_probs=48.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+.|...|+||.|++|++.|+.+|+||.+..+.... +...-++.+.. ++..++++.+.|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999988776543 44555565543 1345677777775543
No 105
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.59 E-value=0.017 Score=40.59 Aligned_cols=46 Identities=24% Similarity=0.474 Sum_probs=35.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~-~~~~d~F~V~~ 176 (315)
+.+.++|+||.+++++..|+++|++|.+...... + +...-.+.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~ 49 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ 49 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence 5688999999999999999999999998887663 2 44443444433
No 106
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.58 E-value=0.015 Score=42.84 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=45.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
..+.+...|+||.|++++++|+..|.||.+..+.-.. +...-++.+.+ +..++.|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhc
Confidence 5789999999999999999999999999999887542 44444555532 1244666666643
No 107
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.57 E-value=0.018 Score=40.46 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=34.6
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHV 81 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v 81 (315)
+.+.++|+||.+++++..|+++|++|....... . ++...-.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 578899999999999999999999999887765 2 3554433333
No 108
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.56 E-value=0.0028 Score=45.07 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=35.4
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v 81 (315)
+++.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 67899999999999999999999999876655555666544544
No 109
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.55 E-value=0.016 Score=43.30 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=45.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG 106 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~ 106 (315)
.+.+...|+||.|++++++|+..|+||.+-.+.. ..|..--++.+. .|. +...++|.+.|....
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~d----~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQD----DTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CCC----HHHHHHHHHHHhCCc
Confidence 5889999999999999999999999999877763 334443233332 122 345677777776543
No 110
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.017 Score=40.87 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=36.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEE
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHV 81 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v 81 (315)
++.+.++|+||.+++++..|+++|++|.+....+. ++...-.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 57899999999999999999999999998887764 3444323333
No 111
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.49 E-value=0.0035 Score=44.55 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=36.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
+.+.+.|+||++++++.+|++.|+||.+....+.++.+.-.|.+..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 5678999999999999999999999988765554455555555544
No 112
>PRK08577 hypothetical protein; Provisional
Probab=96.47 E-value=0.035 Score=45.48 Aligned_cols=52 Identities=31% Similarity=0.486 Sum_probs=41.3
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEE
Q 021245 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVN 175 (315)
Q Consensus 124 ~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~ 175 (315)
+....+.+.|.+.|+||+|++|+++|+++|+||.+....+.. +.+.-.|.+.
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 445688999999999999999999999999999998887653 3333444443
No 113
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.012 Score=41.11 Aligned_cols=44 Identities=32% Similarity=0.503 Sum_probs=34.6
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHV 81 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v 81 (315)
+.|..+|+||-+++++++|+++|+||.+...+.. .|...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 6788999999999999999999999997777653 3554433444
No 114
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.36 E-value=0.022 Score=40.48 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=32.2
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD 71 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~ 71 (315)
..+.+..+|+||.|+++++.|+++|+||.....+..
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 468899999999999999999999999998877653
No 115
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.34 E-value=0.033 Score=42.79 Aligned_cols=64 Identities=9% Similarity=0.203 Sum_probs=44.7
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
+...|.++..|+||.|++|++.|+..|+||.+-.+. | ..+..- +.+.-. + +...++|.+.|...
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSR--mtivv~-~-----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSR--IWLLVN-D-----DQRLEQMISQIEKL 72 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceE--EEEEEc-C-----chHHHHHHHHHhCC
Confidence 445689999999999999999999999999977775 3 333332 233221 2 13566777776554
No 116
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.28 E-value=0.035 Score=39.99 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
+.+..+|+||-|+++++.|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5788999999999999999999999998866544
No 117
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.27 E-value=0.067 Score=39.40 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=38.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
+.+.+..+|+||.|+++...|+++|+||.+-...... +...-.|+|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 4567788999999999999999999999988766553 34556777765
No 118
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.014 Score=41.91 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-C-CEEEEEEEE
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-G-GWFMDVFHV 81 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~-g~~~d~f~v 81 (315)
-|.+.+.|+||++++++.+|+++|+||......+. + +.+.-.+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 36788999999999999999999999998877653 3 544433333
No 119
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.23 E-value=0.04 Score=40.54 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=43.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.+.+...|+||.|++++++++..|+||.+-.+. | ..|..--++.+. |. ++..++|.+.|...
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~~----~~~i~qi~kQL~KL 67 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---CT----ENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---CC----HHHHHHHHHHHhCC
Confidence 588999999999999999999999999977776 3 334443233332 22 23456666666554
No 120
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.22 E-value=0.023 Score=40.59 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=35.9
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~ 82 (315)
+.+..+|+||.++++++.|+++|+||.+...+. .++...-.|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 467899999999999999999999999877654 356665455553
No 121
>PRK04435 hypothetical protein; Provisional
Probab=96.22 E-value=0.054 Score=45.13 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=54.3
Q ss_pred eEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245 24 RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (315)
Q Consensus 24 ~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L 102 (315)
+.-+.....+....|.+.+.|+||+|++|+.+|+++|+||...+... .+|.+--.|.+...+. ...++.|...|
T Consensus 58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L 132 (147)
T PRK04435 58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKL 132 (147)
T ss_pred eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHH
Confidence 55555555668889999999999999999999999999999877655 4566655566653211 12455555555
Q ss_pred CC
Q 021245 103 GP 104 (315)
Q Consensus 103 ~~ 104 (315)
..
T Consensus 133 ~~ 134 (147)
T PRK04435 133 RN 134 (147)
T ss_pred Hc
Confidence 44
No 122
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.19 E-value=0.0011 Score=47.93 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=31.8
Q ss_pred EEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEe
Q 021245 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (315)
Q Consensus 270 vieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T 303 (315)
.+|+++.-||-.+||++-||+.+++.|++|.|.-
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR 35 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGR 35 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhh
Confidence 4789999999999999999999999999999964
No 123
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.18 E-value=0.28 Score=41.33 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=66.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 114 (315)
.+.|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.+. + ++...++|.+.|....+.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~----d~~~i~qi~kQl~Kli~V------ 69 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G----DDKVLEQITKQLNKLVDV------ 69 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhcCccE------
Confidence 5788999999999999999999999999888875 3 46665555554 2 134567777777664431
Q ss_pred CCceeeee-----cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245 115 WPSKQVGV-----HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 115 ~~~~~v~~-----~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.++.. .-......+.|.+... --.+|.+.....+..|.+.
T Consensus 70 ---~~V~~~~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv 114 (157)
T TIGR00119 70 ---IKVSDLTESAIVERELCLVKVSAPGE--GRDEIIRLTNIFRGRIVDV 114 (157)
T ss_pred ---EEEEecCCCcceeeEEEEEEEECCcc--CHHHHHHHHHHhCCEEEEe
Confidence 11111 1112445556666422 2345556666666666654
No 124
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.17 E-value=0.014 Score=40.77 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
+.+..+|+||-|++++++|+++|+||.+...+..
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE 35 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence 6788999999999999999999999988876554
No 125
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.13 E-value=0.028 Score=39.50 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=36.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEE
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI 82 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~ 82 (315)
.+.+.+.|+||++++++..|+++|.+|......+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 36788999999999999999999999998888764 45554344444
No 126
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.11 E-value=0.046 Score=39.33 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=41.9
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
+.+..+|+||-|++++..|+++|.||.+...+.. .+.-.-.+.+.- +. +...+.|.+.|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~-e~-----~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP-MD-----RSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE-ec-----chHHHHHHHHHhCc
Confidence 6788999999999999999999999997765542 233322334332 11 12356777777554
No 127
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.10 E-value=0.069 Score=36.47 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=36.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
+.+.+.|+||.+.+++..|++++++|.+..+...+ +...-.|.+..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 35779999999999999999999999999887665 44444454443
No 128
>PRK08577 hypothetical protein; Provisional
Probab=96.09 E-value=0.087 Score=43.16 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=39.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~ 82 (315)
....|.|.+.|+||+|++++++|+++|.||.+....+. ++.+.-.|.+.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 47789999999999999999999999999998887663 45444444443
No 129
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.05 E-value=0.017 Score=41.25 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=37.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
+.+..+|+||.++++++.|+++|+||.+...... ++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 4578999999999999999999999998877653 356666666644
No 130
>PRK04435 hypothetical protein; Provisional
Probab=95.76 E-value=0.11 Score=43.26 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=48.7
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196 (315)
Q Consensus 124 ~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L 196 (315)
.......+.+.+.|+||+|++|+++|+++|+||......+. ++.+.-.|.+.. .+ . ...++.|-+.|
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev-s~--~---~~~L~~Li~~L 132 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT-SS--M---EGDIDELLEKL 132 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe-CC--h---HHHHHHHHHHH
Confidence 34577899999999999999999999999999998876543 355555666654 11 1 12555555555
No 131
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.72 E-value=0.06 Score=39.64 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=43.9
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
..+.+...|+||.|+++++++...|+||.+-.+-. .++..--++.+ .+. ...++|.+.|..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~~~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--ASE------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--CCC------chHHHHHHHHhc
Confidence 46889999999999999999999999999888864 44544434444 222 235566666554
No 132
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=95.71 E-value=0.031 Score=47.81 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=31.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.+.|.+.|+||++++++++|+..|+||.+-....
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 6889999999999999999999999999888864
No 133
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=95.71 E-value=0.11 Score=43.87 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=65.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 114 (315)
.+.|..+|+||.|++|+++|+..|+||.+-.+.. . .|...-++.+. |. +...++|.+.|....+.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~~----~~~i~qi~kQl~KLidV------ 70 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---GD----EQVIEQITKQLNKLIDV------ 70 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---CC----HHHHHHHHHHHhccccE------
Confidence 5789999999999999999999999999888764 3 46665455553 21 34566777776654321
Q ss_pred CCceeeee-----cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245 115 WPSKQVGV-----HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 115 ~~~~~v~~-----~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.+|.. .-......+.|.+.. .--.++.......+.+|.+.
T Consensus 71 ---~~V~~~~~~~~v~rEl~LiKv~~~~--~~r~~i~~i~~~f~a~ivdv 115 (161)
T PRK11895 71 ---LKVVDLTEEAHVERELALVKVRASG--ENRAEILRLADIFRAKIVDV 115 (161)
T ss_pred ---EEEEecCCcchhheEEEEEEEECCc--ccHHHHHHHHHHhCCEEEEe
Confidence 11111 011234455555532 11346666666667777654
No 134
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.67 E-value=0.05 Score=35.29 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=31.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~ 165 (315)
|.+.++|+||++++++++|+++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999887653
No 135
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.64 E-value=0.064 Score=38.25 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=36.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~ 82 (315)
+.+.+..+|+||.+++++..|+++|+||.+....- .++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 57889999999999999999999999999776543 234554445543
No 136
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.53 E-value=0.14 Score=34.79 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=35.4
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVI 82 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~ 82 (315)
|.+.++|+||.+..++..|.+.+++|.+..+...+ +...-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 35779999999999999999999999988887654 5443344443
No 137
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.50 E-value=0.13 Score=37.80 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=34.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEE
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI 82 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~ 82 (315)
+.+.+..+|+||.|+++...|+++|+||.+-.... .++...-.|+|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd 49 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID 49 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE
Confidence 35667789999999999999999999999776554 222222346664
No 138
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.49 E-value=0.071 Score=38.02 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=36.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEE
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN 175 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~ 175 (315)
+.+.+..+|+||.+.+++++|+++|+||.+....-. ++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 578899999999999999999999999998765433 23444455554
No 139
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.47 E-value=0.53 Score=45.57 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=66.6
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+...|+|. ..+++|.++++..+|.+.|++|........+ .. -.|.|...+. ++..+.|.+.+... ..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~-~~-Is~~V~~~d~-----~~a~~~L~~~~~~~-~~-- 328 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE-TS-ISLTVDETDA-----DEAVRALKDQSGAA-GL-- 328 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC-ce-EEEEEeHHHH-----HHHHHHHHHHHHhc-CC--
Confidence 45567777 5688999999999999999999833322122 11 2456632110 12333444333111 00
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
..+ ....+...|.+.+. ++||+++++..+|++.|+||..
T Consensus 329 -------~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 329 -------DRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred -------ceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 011 12236677778775 7999999999999999999984
No 140
>PRK07334 threonine dehydratase; Provisional
Probab=95.47 E-value=0.11 Score=50.44 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=48.4
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee----C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH----N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~----~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
-.+.|.|.+.||||+|++|+.+|++.++||.+....+. . +.+.-.|.|.- .+.++++.+.+.|+.
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999998764 3 44444444433 124566677666654
No 141
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.38 E-value=0.066 Score=34.67 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=30.8
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD 71 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~ 71 (315)
|.+.++|++|+++++++.|...|++|........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999999888764
No 142
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.22 E-value=0.09 Score=37.14 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 137 DRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 137 DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
|+||.|.+|+++|...|.||.+..+.... +...-++.+.+ +. ...+.|.+.|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhc
Confidence 78999999999999999999999998743 55555555554 11 244556666643
No 143
>PRK06635 aspartate kinase; Reviewed
Probab=95.14 E-value=0.67 Score=44.92 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=66.2
Q ss_pred EEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245 36 TVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (315)
Q Consensus 36 ~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 113 (315)
..|+|. ..++||.++++..+|++.|+||.....+... |..--.|.+...+. +...+.|++ +......
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~----- 331 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGA----- 331 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCc-----
Confidence 334444 4688999999999999999999955443222 23434566643111 112233333 1111110
Q ss_pred cCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 021245 114 TWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 114 ~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
..+ ....+...+.|.+ +++||.++++.++|+++|+||...
T Consensus 332 ----~~i--~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 332 ----ESV--TYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred ----ceE--EEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 011 1223566777766 699999999999999999999764
No 144
>PRK07334 threonine dehydratase; Provisional
Probab=95.12 E-value=0.12 Score=50.21 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=47.2
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-----~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
..|.|.+.||+|+|++|+.+|++.+.||.+.+..+. ++.+.-.|.+.- .+.+.++++.+.|..
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999888764 466554555542 222445666666654
No 145
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.03 E-value=0.056 Score=39.29 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=47.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEE--EEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACV--LYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~--F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
|++.++-||-.|+++|-+|+.+|+-|.+|+|.-+ +++-..+ |.+.+ . +..+.......++...+...|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e-~-~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE-H-DRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC-C-CccccchHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999754 4554444 33333 2 333443334455666555544
No 146
>PRK08210 aspartate kinase I; Reviewed
Probab=95.02 E-value=1.5 Score=42.60 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=64.5
Q ss_pred CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 021245 34 ECTVVKVDSVNK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA 112 (315)
Q Consensus 34 ~~~~v~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 112 (315)
+...|+|.+.+. ||.+++|...|++.|+||.-...+.. . -.|.+... ..++.++.|....
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~---------~~~~a~~~l~~~~------ 330 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE---------DSEKAKEILENLG------ 330 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH---------HHHHHHHHHHHhC------
Confidence 445667766554 99999999999999999996644322 1 24555421 1223333333311
Q ss_pred ccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245 113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 113 ~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
....+ ..+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 331 ---~~v~~----~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 331 ---LKPSV----RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ---CcEEE----eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 01111 235566667664 8999999999999999999974
No 147
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.90 E-value=0.025 Score=42.40 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=43.4
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEEee---------CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 130 AIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTH---------NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 130 ~i~i~~~D-rpgLl~~i~~~l~~~~l~I~~A~i~t~---------~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.|+|.|+| +.|++++++++|+++|+||.+-+-.+. .......|.|+. + + . ..+.+++.|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~-~---~-~---~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG-Q---P-A---DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC-C---C-C---CHHHHHHHHHH
Confidence 37899999 999999999999999999965443211 124566788876 2 2 1 23667777753
No 148
>PRK06635 aspartate kinase; Reviewed
Probab=94.81 E-value=0.36 Score=46.79 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=66.8
Q ss_pred EEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245 129 TAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE 206 (315)
Q Consensus 129 t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 206 (315)
..|++. ..++||+++++.++|+++|+||......... +...-.|.|.. +..++..+.|.+ +.....
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~- 330 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG- 330 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC-
Confidence 334433 4678999999999999999999954322111 23444555543 122223333322 110000
Q ss_pred ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe---CCCCchHH
Q 021245 207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRAKLMF 283 (315)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a---~DRpGLL~ 283 (315)
...|++. .+.+++.|.+ .|+||.++
T Consensus 331 ------------------------------------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a 358 (404)
T PRK06635 331 ------------------------------------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAA 358 (404)
T ss_pred ------------------------------------------------cceEEEc----CCeEEEEEECCCCCCCchHHH
Confidence 0223333 3567888876 59999999
Q ss_pred HHHhhhcCCceEEEEE
Q 021245 284 DIVCTLTDMQYVVFHA 299 (315)
Q Consensus 284 ~I~~~l~~~~i~I~~A 299 (315)
+|.++|++.|++|...
T Consensus 359 ~i~~~La~~~Ini~~i 374 (404)
T PRK06635 359 KMFEALAEEGINIQMI 374 (404)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999885
No 149
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.62 E-value=0.48 Score=34.21 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=34.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~ 176 (315)
+.+..+|+||-|+++..+|+++|+||.+-...-..+ ...=.|+|.-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 345568999999999999999999999875554333 4445666665
No 150
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.43 E-value=0.93 Score=43.86 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=67.1
Q ss_pred ceEEEEEE---eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245 127 DHTAIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (315)
Q Consensus 127 ~~t~i~i~---~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 203 (315)
+...|.|. ..++||+++++...|+++|++|...... .....-.|.|.. +..++..+.|.+.+...
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~~~Is~~V~~----------~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT--PSETSISLTVDE----------TDADEAVRALKDQSGAA 326 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC--CCCceEEEEEeH----------HHHHHHHHHHHHHHHhc
Confidence 45567777 5688999999999999999999743211 111222344532 12223333333322100
Q ss_pred CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCCc
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK 280 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRpG 280 (315)
. ...|.++ .++++|.|.+. ++||
T Consensus 327 -~-------------------------------------------------~~~i~~~----~~~a~IsvVG~~~~~~~g 352 (401)
T TIGR00656 327 -G-------------------------------------------------LDRVEVE----EGLAKVSIVGAGMVGAPG 352 (401)
T ss_pred -C-------------------------------------------------CceEEEe----CCeEEEEEECCCcccCcc
Confidence 0 0223333 35778888875 7999
Q ss_pred hHHHHHhhhcCCceEEEE
Q 021245 281 LMFDIVCTLTDMQYVVFH 298 (315)
Q Consensus 281 LL~~I~~~l~~~~i~I~~ 298 (315)
+++++.++|.+.|++|..
T Consensus 353 ~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 353 VASEIFSALEEKNINILM 370 (401)
T ss_pred HHHHHHHHHHHCCCcEEE
Confidence 999999999999999985
No 151
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.30 E-value=0.37 Score=34.27 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=38.1
Q ss_pred EEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 132 ELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 132 ~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.|.-+||||-|.+++++++. |.||....=...+.....++..-. . .+++..+.+.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie-~-----~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ-V-----PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE-e-----CCHHHHHHHHHHHHH
Confidence 57789999999999999999 999987654433211222222222 1 123466667766643
No 152
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.24 E-value=0.36 Score=50.37 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=53.2
Q ss_pred eEEEecCCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245 24 RASVDNSSC-PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (315)
Q Consensus 24 ~v~i~~~~~-~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (315)
.+.+..... .-...|.|.+.||+|+|++|+.++++.++||.+.++.+. ++.+...|.+.- .+-..+.+|..
T Consensus 654 ~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~ 727 (743)
T PRK10872 654 DAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLG 727 (743)
T ss_pred EeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHH
Confidence 455654322 234588999999999999999999999999999998763 577665666642 22245566666
Q ss_pred HHCC
Q 021245 101 ALGP 104 (315)
Q Consensus 101 ~L~~ 104 (315)
.|..
T Consensus 728 ~L~~ 731 (743)
T PRK10872 728 KLNQ 731 (743)
T ss_pred HHhc
Confidence 6654
No 153
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.19 E-value=0.67 Score=35.20 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
..+.+.+..+|+||-|+++...|+.+|+|+..-...-.. ....=.|+|.- +|. .+ ..++.+-+.|...|.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~--~~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK--SA-PALDPIIKSLRNDIG 83 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC--CC-HHHHHHHHHHHHHhC
Confidence 446777777999999999999999999999876655443 33445777865 343 22 244444444544443
No 154
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.12 E-value=0.21 Score=35.56 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=39.5
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
+.|.-+|+||-|.+++.+++. |.||...+-...+-.....+......+ ++..+.|.+.|...
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~~ 62 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEAL 62 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHHc
Confidence 357889999999999999999 999997655432211122233332222 24566777777553
No 155
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.10 E-value=0.31 Score=50.78 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=47.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
...|.|.+.||+|||++|+.++++.++||.+..+.+.. +.+...|.|.- .+.+.+.++-..|.
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 45888999999999999999999999999999987753 55555555543 22346666666663
No 156
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.07 E-value=0.29 Score=43.18 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=43.3
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 124 ~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
..+....+.+.-.|+||....++..|.++|+||...++... ++.++.+..+..
T Consensus 144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 34455677788899999999999999999999999999875 466777776654
No 157
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.89 E-value=0.48 Score=49.26 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=52.4
Q ss_pred EEEecCCCC-CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245 25 ASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (315)
Q Consensus 25 v~i~~~~~~-~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L 102 (315)
+.+...... -...|.|.+.||+|+|++|+.+++..++||.+.+..+. ++.+...|.+.- .+-+.+.+|-..|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 556543222 34478899999999999999999999999999998774 455554555542 2224566666666
Q ss_pred CCC
Q 021245 103 GPK 105 (315)
Q Consensus 103 ~~~ 105 (315)
...
T Consensus 689 r~i 691 (702)
T PRK11092 689 RVM 691 (702)
T ss_pred hCC
Confidence 543
No 158
>PRK06291 aspartate kinase; Provisional
Probab=93.75 E-value=2.6 Score=41.73 Aligned_cols=105 Identities=13% Similarity=0.206 Sum_probs=67.9
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+...|+|.+. +.+|+++++..+|++.|++|.-....+.... -.|.|...+- +...+.|.+.+.....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d~-----~~av~~L~~~~~~~~~--- 389 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEADL-----EKALKALRREFGEGLV--- 389 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHHH-----HHHHHHHHHHHHHhcC---
Confidence 4556777764 7899999999999999999985443332211 2455543111 1234445544432110
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVA 157 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~ 157 (315)
..+. ...+...|.|.|. +++|+.+++..+|++.|+||.
T Consensus 390 -----~~i~----~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~ 430 (465)
T PRK06291 390 -----RDVT----FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIK 430 (465)
T ss_pred -----cceE----EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEE
Confidence 0111 1235567778775 799999999999999999997
No 159
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=93.65 E-value=0.26 Score=34.79 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245 44 NKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (315)
Q Consensus 44 DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~ 82 (315)
|+||.|.+|++++...|+||.+..+.. .++..--++.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~ 41 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS 41 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe
Confidence 789999999999999999999999876 556554444443
No 160
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.47 E-value=0.4 Score=49.84 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=47.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
.+.|.|.+.||+|+|++|+.+++..++||.++.+.+.+ +.+...|.+.- .+.+.+..|-..|.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 45888999999999999999999999999999987765 44444555543 12356666666663
No 161
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.38 E-value=0.37 Score=40.65 Aligned_cols=47 Identities=15% Similarity=0.408 Sum_probs=38.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEEe
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVND 176 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~--~~~d~F~V~~ 176 (315)
-+.+.+.++||.|.+++++++++|.||..|+-+..++ ...-.|.+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 4678899999999999999999999999999998653 4555555544
No 162
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.25 E-value=1.1 Score=34.08 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=32.5
Q ss_pred cCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 29 NSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 29 ~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.....+.+.|.+..+|+||-|+++...|+..|+|+. +|.+
T Consensus 8 ~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeS 47 (90)
T cd04931 8 NSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIES 47 (90)
T ss_pred ccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEe
Confidence 333445577777789999999999999999999999 5544
No 163
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.15 E-value=0.19 Score=49.01 Aligned_cols=50 Identities=26% Similarity=0.332 Sum_probs=44.5
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
....|.+.-+|+||.++.|+.+|+++|+||...+..+.++.+..++.+..
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~ 386 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA 386 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence 56788889999999999999999999999999999888888888886654
No 164
>PRK09034 aspartate kinase; Reviewed
Probab=93.14 E-value=3.2 Score=41.06 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=65.7
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|++.+ .+.+|+++++...|++.|++|.-. +.+... -.|.+...+-. . ..+..+...|...+..
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~s-is~~v~~~~~~---~-a~~~~l~~el~~~~~~-- 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDD-LSIIIRERQLT---P-KKEDEILAEIKQELNP-- 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcE-EEEEEeHHHhh---H-HHHHHHHHHHHHhhCC--
Confidence 345566664 578999999999999999999854 222222 35777542111 0 0112333233221110
Q ss_pred CcccCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
..+. ...+...|.+.+ .++||+++++..+|+++|+||.-.
T Consensus 377 -------~~I~--~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mI 419 (454)
T PRK09034 377 -------DELE--IEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMI 419 (454)
T ss_pred -------ceEE--EeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 0111 223567788865 478999999999999999999754
No 165
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.99 E-value=0.47 Score=34.26 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.5
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEE
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKA 66 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A 66 (315)
+.+..+|+||-|+++...|+.+|+||..-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I 30 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKI 30 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEE
Confidence 34556899999999999999999999955
No 166
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.98 E-value=0.81 Score=47.55 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=52.0
Q ss_pred eEEEecCCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHH
Q 021245 24 RASVDNSSC-PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKA 101 (315)
Q Consensus 24 ~v~i~~~~~-~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~ 101 (315)
.+.+..... .-.+.|.|.+.||+|+|++|+.+++..+.||.+.++.+. ++.+.-.|.+.- .+-..+..|...
T Consensus 598 ~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~ 671 (683)
T TIGR00691 598 EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLK 671 (683)
T ss_pred EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence 355654322 234588899999999999999999999999999998775 466554555542 222445666666
Q ss_pred HCC
Q 021245 102 LGP 104 (315)
Q Consensus 102 L~~ 104 (315)
|..
T Consensus 672 L~~ 674 (683)
T TIGR00691 672 IKT 674 (683)
T ss_pred HhC
Confidence 654
No 167
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.80 E-value=0.76 Score=33.30 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=34.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
+.+..+|+||-|+++...|+.+|+|+..-...-.. ....=.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 44556899999999999999999999876655443 33445677765
No 168
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.79 E-value=0.068 Score=37.93 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=30.5
Q ss_pred CCeeEEEEEeC----CCCchHHHHHhhhcCCceEEEEEE
Q 021245 266 KGYSVVNVKCR----DRAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 266 ~~~tvieV~a~----DRpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
.++..|.|.+. |.||+++.+..+|++.||+|+...
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 46788888887 899999999999999999998876
No 169
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.62 E-value=0.57 Score=48.35 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=46.9
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA-CVLYVNDDTTCRAVGDQTRLSLMEEQL 196 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~-d~F~V~~~~~g~~~~~~~~~~~l~~~L 196 (315)
.-...|.|.+.||+|+|++|+.+|+..++||.+....+..+... -.|.+.- .+...+..|-..|
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l 689 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARL 689 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHH
Confidence 34568999999999999999999999999999999887644433 3343333 2234566665555
No 170
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.58 E-value=0.79 Score=47.66 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
.+.|.|.+.||+|+|++|+.+|+..++||.+.++.+.. +.+.-.|.|.- .+...+..|-..|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 45888999999999999999999999999999998764 44444444443 22356666665553
No 171
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.52 E-value=1 Score=32.89 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=35.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
+.+..+|+||-|+++...|+.+|+|+..-...... ....=.|+|.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 44556899999999999999999999876665543 33455777765
No 172
>PRK06291 aspartate kinase; Provisional
Probab=92.49 E-value=3.1 Score=41.25 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=68.7
Q ss_pred ceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245 127 DHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (315)
Q Consensus 127 ~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 203 (315)
+...|.|.+. +.||+++++.++|+++|++|.-..-.+ ...--.|.|.. +...+..+.|.+.+...
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sIsf~V~~----------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNISLVVDE----------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceEEEEEeH----------HHHHHHHHHHHHHHHHh
Confidence 4567777754 789999999999999999987532222 22223444433 11222233343333210
Q ss_pred CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCCc
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK 280 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRpG 280 (315)
. ...|++. .+.++|.|.+. ++||
T Consensus 388 ~--------------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~g 413 (465)
T PRK06291 388 L--------------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPG 413 (465)
T ss_pred c--------------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcC
Confidence 0 0124443 35678888876 7999
Q ss_pred hHHHHHhhhcCCceEEEEEE
Q 021245 281 LMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 281 LL~~I~~~l~~~~i~I~~Ak 300 (315)
++.++..+|.+.|++|..-.
T Consensus 414 v~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 414 VAGRIFSALGESGINIKMIS 433 (465)
T ss_pred hHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999997544
No 173
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.08 E-value=0.11 Score=38.98 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=28.0
Q ss_pred EEEEEecC-CccHHHHHHHHHHhCCceEEEEE
Q 021245 37 VVKVDSVN-KPGILLEVVQVLSDLDLIITKAY 67 (315)
Q Consensus 37 ~v~V~~~D-rpGLl~~i~~~L~~~glnI~~A~ 67 (315)
.|||.++| ..|+++.++++|+++|+||.+-+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 37999999 99999999999999999998443
No 174
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.00 E-value=0.57 Score=39.56 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g 73 (315)
-+.+.+.|+||.|.++++.+++.|.||..+..|. .+|
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g 41 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG 41 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence 4678899999999999999999999999999997 455
No 175
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.89 E-value=0.74 Score=32.55 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=34.4
Q ss_pred ceEEEEEEeC----CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 127 DHTAIELIGR----DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~----DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
+...|+|.++ |.||+++++++.|+++|+||.... | ..-+.+.|..
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 4567788877 799999999999999999997655 2 3456666655
No 176
>PRK08210 aspartate kinase I; Reviewed
Probab=91.84 E-value=3.4 Score=40.03 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCeeEEEEEeC---CCCchHHHHHhhhcCCceEEEE
Q 021245 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFH 298 (315)
Q Consensus 266 ~~~tvieV~a~---DRpGLL~~I~~~l~~~~i~I~~ 298 (315)
.+++++.|.+. ++||++.++..+|.+.|++|.+
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 35678888875 8999999999999999999985
No 177
>PRK06382 threonine dehydratase; Provisional
Probab=91.75 E-value=1.4 Score=42.86 Aligned_cols=67 Identities=28% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE----ee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW----TH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~----t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
....+.+.|..+|+||-|++++.+|.++|+||.+.... .. .+...-+|.|.. . +++..+.|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet-~------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV-R------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999877654 12 245555666655 1 12344466666643
No 178
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.57 E-value=1.2 Score=46.11 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=51.6
Q ss_pred eEEEecCC-CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHH
Q 021245 24 RASVDNSS-CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKA 101 (315)
Q Consensus 24 ~v~i~~~~-~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~ 101 (315)
.|.+.... ..-...|.|.+.||+|+|++|+.+|+..+.||......+.+ +.+.-.|.+. +.+-..+.+|-..
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~ 688 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLAR 688 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHH
Confidence 55666653 34556899999999999999999999999999988887644 4443333333 1222345666666
Q ss_pred HCC
Q 021245 102 LGP 104 (315)
Q Consensus 102 L~~ 104 (315)
|..
T Consensus 689 l~~ 691 (701)
T COG0317 689 LKQ 691 (701)
T ss_pred Hhc
Confidence 554
No 179
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.67 E-value=2.7 Score=31.27 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=36.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
++.+.-+|+||=|++++.+|+ +.||....-... .+.+.-.+.+.. +++ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-ANG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-CCc-----HHHHHHHHHHHHH
Confidence 467889999999999999999 556654333222 233333333333 111 3456677777644
No 180
>PRK09084 aspartate kinase III; Validated
Probab=90.61 E-value=17 Score=35.95 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=63.1
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+...|+|.+. +.+|.++++...|++.|++|.-.. +.. .--+|.+...+-..-......+++.+.|...
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~----- 375 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQL----- 375 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcC-----
Confidence 4556777654 689999999999999999998443 322 1235666542211100011223444344321
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCce
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFN 155 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~ 155 (315)
.+..+ ..+...|.+.|. ++||+++++..+|++.++.
T Consensus 376 -----~~i~~----~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~ 414 (448)
T PRK09084 376 -----CRVEV----EEGLALVALIGNNLSKACGVAKRVFGVLEPFNIR 414 (448)
T ss_pred -----CeEEE----ECCeEEEEEECCCcccCcChHHHHHHHHHhCCeE
Confidence 01122 236677888876 7999999999999875443
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.24 E-value=1.2 Score=42.43 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=41.9
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
-+.++.|.|.-+|+||-+++|+..|...|+||.+.+|.-..+...-++.+.-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 3577899999999999999999999999999999999654444444444443
No 182
>PRK11899 prephenate dehydratase; Provisional
Probab=90.15 E-value=1.7 Score=40.14 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=38.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.|.+.+..+|+||.|+++.++|+.+|+|+..-...-.+ +...=.|+|.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 47777777999999999999999999999876665444 33444788865
No 183
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=90.01 E-value=19 Score=35.61 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=73.8
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245 33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (315)
Q Consensus 33 ~~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (315)
.+...|+|.+. ..+|.++++...|++.|+||.-......... -.|.+...+. +...+.+++...+...
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 46667777755 3459999999999999999983322222222 3566653211 2334445444433221
Q ss_pred CCcccCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 110 AGAKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
++. -..+...|.+.+ +..||..+++..+|++.++||.... ....--.|.|.+
T Consensus 376 -------~v~----~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~ 430 (447)
T COG0527 376 -------EVE----VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE 430 (447)
T ss_pred -------eEE----eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence 111 122445566664 4779999999999999999998655 223445566654
No 184
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=89.82 E-value=0.46 Score=42.68 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=38.0
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEE--EEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA--CVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~--d~F~V~~ 176 (315)
..-+|.+...|.||++++|+++|+..|.||.+.-+.-.....+ .+..+.+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G 127 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG 127 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence 4567889999999999999999999999999877654333322 2555555
No 185
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=89.76 E-value=17 Score=35.68 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=64.8
Q ss_pred CeEEEEEEecC-C-ccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245 34 ECTVVKVDSVN-K-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (315)
Q Consensus 34 ~~~~v~V~~~D-r-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 111 (315)
+...|+|.+.+ . +|.++++...|.+.|++|......+.. .. -.|.+...+- ++..+.|.... ....
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~~~-~~~~---- 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKSEL-NLSA---- 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHHHH-HhcC----
Confidence 45556776543 3 799999999999999999855432322 11 2455543211 11222222111 1100
Q ss_pred cccCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 021245 112 AKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 112 ~~~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
...+ ....+...|.+.+ .++||+++++.+.|+++|+||....
T Consensus 369 -----~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 -----LSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred -----cceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0011 1234667788865 4789999999999999999997554
No 186
>PRK09181 aspartate kinase; Validated
Probab=89.68 E-value=23 Score=35.30 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=65.5
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|+|.+. +.+|+.+++...|++.|++|. .+.+.. .--.|.+... . ...+++.+.|...+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~~-- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYPN-- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcCC--
Confidence 4556677544 789999999999999999998 344322 1234666432 1 1123333333322210
Q ss_pred CcccCCceeeeecCCCceEEEEEEeCC--cccHHHHHHHHHHhCCceEEE
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~D--rpgLl~~i~~~l~~~~l~I~~ 158 (315)
..+. . .+...|.+.|.. +||+.+++.++|++.|+||..
T Consensus 395 -------~~i~--~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~ 434 (475)
T PRK09181 395 -------AEVT--V-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLA 434 (475)
T ss_pred -------ceEE--E-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEE
Confidence 0122 1 456778887754 899999999999999999864
No 187
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.60 E-value=2 Score=31.98 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=38.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.+.|.-+|+||-|++++.+|+ +.||.+..-.. ..+..--.+.+.-. +. ++..+.+.+.|.+.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~----~~~~~~i~~~L~~~ 65 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG----AEELAELLEDLKSA 65 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc----HHHHHHHHHHHHHC
Confidence 477889999999999999999 67777444332 22332222323222 21 24566777777654
No 188
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.57 E-value=0.62 Score=45.41 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=47.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHH
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIE 99 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~ 99 (315)
+...|.+.-+|+||.+++|+..|+++|+||...+.+..++.++-.+-+ ++. + +++..++|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~~-~-~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DAD-Y-AEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CCC-C-cHHHHHHHH
Confidence 567888999999999999999999999999988888888877644443 332 2 234555655
No 189
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=89.32 E-value=1.7 Score=38.22 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=39.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV 81 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v 81 (315)
....+.+.-.|+||.+.+++..|.+.|+||-..++.- .+|.++-...+
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 4445667779999999999999999999999999975 56777644444
No 190
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.16 E-value=2.5 Score=33.60 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=37.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEe
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR-IACVLYVND 176 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~-~~d~F~V~~ 176 (315)
.+.+.+..+|+||-|+++...|+.+|+|+..-......+. ..=.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4666677799999999999999999999987665554332 334666754
No 191
>PLN02551 aspartokinase
Probab=88.89 E-value=25 Score=35.49 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=70.7
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|+|.+. +.+|.++++...|+++|++|.-. .+.. .--.|.+...+-.. .+.+.+.+++.+.+ +...
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~e-l~~~- 436 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWS--RELIQQELDHLVEE-LEKI- 436 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHH-hhcC-
Confidence 4567777655 68999999999999999999844 3322 11246665422110 01111122222111 1100
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.. +. ...+...|.|.|. .+||+++++.++|+.+|+||.-.. .+ ....-.|.|.+
T Consensus 437 -----~~--V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV~~ 493 (521)
T PLN02551 437 -----AV--VN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIVND 493 (521)
T ss_pred -----Ce--EE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEEeH
Confidence 01 11 1235566776654 689999999999999999986432 23 23334455554
No 192
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=88.85 E-value=2.9 Score=47.07 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCCCCChH----HHHHHhhcC---CCeEEEecCC--CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--
Q 021245 2 ANAYWPYFDPE----YESLSLRIN---PPRASVDNSS--CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-- 70 (315)
Q Consensus 2 ~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~--~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-- 70 (315)
+.+|=..|+++ +.+++.++. +..+.+.... .++...+.++.+.++..|++++-+|..+|+.|.+.+-+.
T Consensus 447 p~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~ 526 (1528)
T PF05088_consen 447 PASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIR 526 (1528)
T ss_pred CHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceee
Confidence 34677788888 667776664 2355554332 346789999999999999999999999999999998875
Q ss_pred e-C--CEEEEEEEEEcCCCCCCCChhHHHHHHHHHC
Q 021245 71 D-G--GWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103 (315)
Q Consensus 71 ~-~--g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~ 103 (315)
. + ..++..|.+....+.........+.+++++.
T Consensus 527 ~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 527 RADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred cCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 2 2 3577788888776665444455555555554
No 193
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.79 E-value=1.7 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=26.7
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
+.+..+|+||-|+++...|+..|+|+. +|.+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeS 33 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLT--HIES 33 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEE--EEEC
Confidence 445568999999999999999999999 6654
No 194
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=88.67 E-value=17 Score=38.78 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245 33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (315)
Q Consensus 33 ~~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (315)
.+.+.|+|.+. .+||+++++...|++.|++|.-....+ +..- -.|.|...+. ++..+.|.+.+...+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~- 384 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKE- 384 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhcc-
Confidence 35667888765 689999999999999999997544333 2222 2466653211 12333444433221110
Q ss_pred CCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 021245 110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.....+. ...+...|.|.+. ++||+++++.++|++.|+||.-.
T Consensus 385 ---~~~~~i~----~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~I 430 (819)
T PRK09436 385 ---GLLEPLE----VEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAI 430 (819)
T ss_pred ---CCcceEE----EeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 0000111 2236677888776 78999999999999999999743
No 195
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=88.63 E-value=2.5 Score=38.96 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=39.4
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
..|.+.+..+|+||-|+++.++|+.+|+|+..-...-.. +...=.|+|.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 478888888899999999999999999999866655444 34455677765
No 196
>PRK09034 aspartate kinase; Reviewed
Probab=88.59 E-value=9.7 Score=37.65 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=30.1
Q ss_pred CeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEEEEe
Q 021245 267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (315)
Q Consensus 267 ~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~AkI~T 303 (315)
+.++|.|.+ .++||++.++-.+|++.|++|....-++
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 467787864 3899999999999999999998775433
No 197
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.10 E-value=1.3 Score=44.59 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=41.6
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
.+....+.+...|+||.++.++..|+++++||...++... ++.++.++.+..
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~ 502 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD 502 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC
Confidence 3455666677799999999999999999999999998764 466777776644
No 198
>PRK06382 threonine dehydratase; Provisional
Probab=88.09 E-value=2.9 Score=40.60 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE----e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS----S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~----t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
...+.+.|.-+|+||-|++++..|.++|.||.+.... . ..+...-.|.|... + ++..+.|.+.|.+.
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~~ 399 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALREM 399 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHHC
Confidence 3567899999999999999999999999999977654 1 23444444555321 1 23445666676553
No 199
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.04 E-value=14 Score=36.34 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEE
Q 021245 266 KGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 266 ~~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
.+.+++.|.+ .++||++++|..+|++.|++|....
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 3567888864 4889999999999999999998764
No 200
>PRK11899 prephenate dehydratase; Provisional
Probab=88.01 E-value=3.3 Score=38.20 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=36.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK 87 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~ 87 (315)
.+.+.+..+|+||.|+++.+.|+..|+|+.+-.-.. .++..--.|++. -+|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id-~eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYAD-IEGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEE-EECC
Confidence 566777779999999999999999999999433332 333232356664 4554
No 201
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=87.91 E-value=9.4 Score=40.69 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=71.0
Q ss_pred CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 126 ~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
.+.+.|.|.+. .+||+++++...|+++|++|.-..-.+ ....-.|.|.. +...+..+.|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~----------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQ----------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence 46677888754 689999999999999999996443222 22223455543 1122222333332211
Q ss_pred CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA 279 (315)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp 279 (315)
... . .....|++. .+.++|.|.+. ++|
T Consensus 381 el~-----------------------~-----------------------~~~~~i~~~----~~valIsvvG~gm~~~~ 410 (819)
T PRK09436 381 ELK-----------------------E-----------------------GLLEPLEVE----ENLAIISVVGDGMRTHP 410 (819)
T ss_pred Hhc-----------------------c-----------------------CCcceEEEe----CCEEEEEEEccCcccCc
Confidence 100 0 000224444 35788888876 789
Q ss_pred chHHHHHhhhcCCceEEEEEE
Q 021245 280 KLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 280 GLL~~I~~~l~~~~i~I~~Ak 300 (315)
|++.++-.+|.+.|++|+.-.
T Consensus 411 gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 411 GIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred CHHHHHHHHHHHCCCCEEEEE
Confidence 999999999999999998654
No 202
>PRK08198 threonine dehydratase; Provisional
Probab=87.69 E-value=5.1 Score=38.78 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.5
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~ 162 (315)
......+.|.-+|+||-|+++...+++.|.||.+....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34556899999999999999999999999999987754
No 203
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.45 E-value=1.8 Score=31.58 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=32.9
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCC
Q 021245 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGK 87 (315)
Q Consensus 38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~ 87 (315)
+.+..+|+||-|+++...|+..|+|+..-.-.. ...+-. .|+|. -+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y-~F~id-~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEF-EIFVD-CECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceE-EEEEE-EEcC
Confidence 445568999999999999999999999433332 233433 35554 3344
No 204
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=86.84 E-value=22 Score=38.19 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=63.3
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|+|.+ .+.+|.++++...|++.|++|.- |.+.. .--+|.+.+.+. ....+.++.+.+.|....
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~~~---- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQIC---- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEcCC--CEEEEEEccccc--cchHHHHHHHHHHHhhcC----
Confidence 455667753 46899999999999999999973 33322 112455543221 101123444444443211
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceE
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNV 156 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I 156 (315)
...+ ..+...|.|.+. .+||+.+++..+|++.|+++
T Consensus 391 ------~i~~----~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ------RVKI----IVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ------cEEE----eCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1111 135577888875 88999999999999987655
No 205
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.42 E-value=1.8 Score=41.59 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=37.6
Q ss_pred ceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~-DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
..+.+.+.-+ |+||.|++++.+|+.+|+||.+-++.-......- |+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEE
Confidence 4677777786 9999999999999999999999888322222222 77765
No 206
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=86.42 E-value=3.8 Score=37.76 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=38.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe---eCCEEEEEEEEEcCCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWFMDVFHVIDQQGK 87 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g~~~d~f~v~~~~g~ 87 (315)
..+.+.+..+|+||-|+++.+.|+..|+|.. +|.+ ..+..--.|+|. -+|.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD-~eg~ 246 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFID-IEGH 246 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEE-EecC
Confidence 4778888888999999999999999999999 5654 333333346664 4555
No 207
>PRK06545 prephenate dehydrogenase; Validated
Probab=86.39 E-value=1.6 Score=41.61 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=36.0
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 32 ~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
-+.+..|.|.-+|+||-+++++..|...|+||.+-+|.-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 357889999999999999999999999999999999964
No 208
>PRK12483 threonine dehydratase; Reviewed
Probab=86.32 E-value=27 Score=35.28 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC-CC--
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG-HI-- 108 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~-~~-- 108 (315)
.....+.|.-+||||-|.+++..|... ||.+..-... .+. ...+....-.+. +...+.|.+.|.+.. ..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR----HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence 355678899999999999999999988 8886555432 233 333444332221 122367777775432 11
Q ss_pred -CCC--cccCCceeeeec--CCCceEEEEEEeCCcccHHHHHHHHHHh-CCceEEE
Q 021245 109 -TAG--AKTWPSKQVGVH--SVGDHTAIELIGRDRPGLLSEISAVLAN-LRFNVAA 158 (315)
Q Consensus 109 -~~~--~~~~~~~~v~~~--~~~~~t~i~i~~~DrpgLl~~i~~~l~~-~~l~I~~ 158 (315)
... .+...+.-+--. ....--.+.+.-|.|||-|.+.+..|.. .++.-.+
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~ 471 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFH 471 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeee
Confidence 100 000000000000 1122345677889999999999999985 3554433
No 209
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=86.27 E-value=2.7 Score=35.47 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=45.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
-.+.+.-.|.||.|+++++.|+..|.||.+--+.-.. +....++.+.+ ++..++++.+.|....
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g--------~~~~~EQi~kQL~kLi 70 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG--------DEQVLEQIIKQLNKLI 70 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC--------CcchHHHHHHHHHhhc
Confidence 4677888999999999999999999999988876543 33334444433 1235566777665544
No 210
>PRK08198 threonine dehydratase; Provisional
Probab=86.21 E-value=5 Score=38.89 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=32.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~ 69 (315)
....+.|.-+|+||-|++++..+++.|.||.+....
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 445789999999999999999999999999987765
No 211
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.05 E-value=7 Score=37.47 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=44.2
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe---e-C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT---H-N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t---~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
....+.|.-+|+||.|+++++.++++|.||.+..-.. . + +.+.-.+.+.. . +++..+.|.+.|.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet-~------~~~~~~~i~~~L~ 372 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET-R------GKEHLDEILKILR 372 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe-C------CHHHHHHHHHHHH
Confidence 4458899999999999999999999999998875431 1 1 34444455543 1 1345556666664
No 212
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=86.02 E-value=1.4 Score=44.41 Aligned_cols=51 Identities=14% Similarity=0.350 Sum_probs=40.9
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
+.+..+.+...|+||.+..++..|.++++||...++... ++.++.++.+..
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~ 501 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ 501 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence 445556667799999999999999999999999988764 466777776654
No 213
>PLN02551 aspartokinase
Probab=85.78 E-value=16 Score=36.85 Aligned_cols=114 Identities=12% Similarity=0.241 Sum_probs=69.9
Q ss_pred CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 126 ~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
.+.+.|+|.+. +++|+++++.+.|+++|++|.-. .+.. .--.|.+.. . .+. ..+.+++.+...+..
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~-~---~~~---~~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDP-S---KLW---SRELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEeh-h---Hhh---hhhhHHHHHHHHHHH
Confidence 34567777655 68999999999999999999865 2221 223455544 1 111 122333333221110
Q ss_pred CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC--CCCc
Q 021245 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR--DRAK 280 (315)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~--DRpG 280 (315)
+.+ ...|.+. .+.++|.|.+. .+||
T Consensus 433 ------------------------l~~-------------------------~~~V~v~----~~vAiISvVG~~~~~~g 459 (521)
T PLN02551 433 ------------------------LEK-------------------------IAVVNLL----QGRSIISLIGNVQRSSL 459 (521)
T ss_pred ------------------------hhc-------------------------CCeEEEe----CCEEEEEEEccCCCCcc
Confidence 100 0124443 35677777754 6899
Q ss_pred hHHHHHhhhcCCceEEEEEEEEe
Q 021245 281 LMFDIVCTLTDMQYVVFHAAISS 303 (315)
Q Consensus 281 LL~~I~~~l~~~~i~I~~AkI~T 303 (315)
++.++-.+|.+.||+|..-..++
T Consensus 460 vaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 460 ILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred HHHHHHHHHHHCCCCeEEEEecC
Confidence 99999999999999997766433
No 214
>PRK06349 homoserine dehydrogenase; Provisional
Probab=85.40 E-value=4.6 Score=39.55 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=40.2
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
...+.|.+...|+||.|++|+++|.++++||.+..-....+....++.+++
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 455788899999999999999999999999997654433344556667776
No 215
>PRK09084 aspartate kinase III; Validated
Probab=85.21 E-value=25 Score=34.70 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=65.9
Q ss_pred CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 126 ~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
.+...|+|.+. +.+|+++++...|+++|+||.-.. +. ..--+|.|.. .+ . . ......+.+.+.+.|..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss--e~sIs~~i~~-~~--~-~-~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS--EVSVSLTLDT-TG--S-T-STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc--CcEEEEEEec-hh--h-h-hhhhHHHHHHHHHHHhc
Confidence 45567777654 689999999999999999998653 21 1233566654 21 1 0 11112232333222221
Q ss_pred CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA 279 (315)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp 279 (315)
. ..|.+. .+.++|.|.+. ++|
T Consensus 375 -~---------------------------------------------------~~i~~~----~~va~IsvvG~gm~~~~ 398 (448)
T PRK09084 375 -L---------------------------------------------------CRVEVE----EGLALVALIGNNLSKAC 398 (448)
T ss_pred -C---------------------------------------------------CeEEEE----CCeEEEEEECCCcccCc
Confidence 0 124443 35788888876 799
Q ss_pred chHHHHHhhhcCCceEE
Q 021245 280 KLMFDIVCTLTDMQYVV 296 (315)
Q Consensus 280 GLL~~I~~~l~~~~i~I 296 (315)
|++.++..+|.+.++.+
T Consensus 399 gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 399 GVAKRVFGVLEPFNIRM 415 (448)
T ss_pred ChHHHHHHHHHhCCeEE
Confidence 99999999999865554
No 216
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.04 E-value=13 Score=31.38 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=43.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH 107 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~ 107 (315)
.+.+.-.|.||.|+++++.++..|+||.+-.+- | .++..--++.+. |. +...++|.+.|....+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLid 71 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhcc
Confidence 567888999999999999999999999977775 3 334333333332 21 2346677776655443
No 217
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=83.41 E-value=6.1 Score=38.24 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=38.6
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
..|.+.+..+|+||.|+++.+.|+.+|+|+..-...-.+ +...=.|+|.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 356676777899999999999999999999876665444 33455677765
No 218
>PRK08818 prephenate dehydrogenase; Provisional
Probab=83.23 E-value=1.9 Score=41.49 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=34.0
Q ss_pred eEEEEEeC-CCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEee
Q 021245 269 SVVNVKCR-DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVL 314 (315)
Q Consensus 269 tvieV~a~-DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v 314 (315)
+-+-+.-+ |+||-|++|+..|++.||||.+-.+ .....-+-.|||
T Consensus 296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i 341 (370)
T PRK08818 296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI 341 (370)
T ss_pred eEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence 33436665 9999999999999999999999988 333333333776
No 219
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=83.02 E-value=1.6 Score=39.35 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.9
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
..-.|.+...|.||.+++|+++|+..|+||.+--+--
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 3456888899999999999999999999999776643
No 220
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.55 E-value=9 Score=36.74 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=43.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE---e--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS---S--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~---t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
...+.|.-+|+||.|++++..+++.|.||.+-.-. . ..+.+.-.+.+. ..+ ++..+.|.+.|.+
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve-t~~-----~~~~~~i~~~L~~ 373 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE-TRG-----KEHLDEILKILRD 373 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE-eCC-----HHHHHHHHHHHHH
Confidence 34788999999999999999999999999976543 1 234443333332 212 2345566666654
No 221
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=82.07 E-value=76 Score=33.91 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=64.8
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|+|.+. +.+|.++++..+|++.|++|.-.... .++.. -.|.+... ....+.+.|.... ..
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~-~s~~s-is~~i~~~---------~~~~~~~~l~~~~-~~- 382 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVH-PDRQL-LQLAYTSE---------VADSALKLLDDAA-LP- 382 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEec-CCCcE-EEEEEeHH---------HHHHHHHHHHhhc-CC-
Confidence 4556777765 77899999999999999999744322 22222 23444421 1122233333221 10
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
.+.. -..+...|.+.+. .++|+.+++..+|++.|+++..
T Consensus 383 -----~~i~----v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 383 -----GELK----LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred -----CcEE----EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 1111 1236677888874 6899999999999999999853
No 222
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.07 E-value=5.4 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=29.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.+.+.+..+|+||-|+++...|+.+|+|+. +|.+
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IES 74 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLES 74 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEEC
Confidence 466667779999999999999999999999 6654
No 223
>PRK09181 aspartate kinase; Validated
Probab=81.00 E-value=19 Score=35.94 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=28.6
Q ss_pred CCeeEEEEEeCC--CCchHHHHHhhhcCCceEEEEEE
Q 021245 266 KGYSVVNVKCRD--RAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 266 ~~~tvieV~a~D--RpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
.+.++|.|.+.. +||+..++-.+|.+.||+|..-.
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 356778787654 89999999999999999996544
No 224
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=80.82 E-value=3.1 Score=34.97 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=27.6
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI 68 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I 68 (315)
+..++.....+.||+++.+++.++..|++|.++-.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 34445555678999999999999999999995433
No 225
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=80.11 E-value=17 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=24.2
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNVA 157 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~ 157 (315)
.|.+.+. +.||+++++..+|++.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4566664 889999999999999999995
No 226
>PRK09224 threonine dehydratase; Reviewed
Probab=79.99 E-value=69 Score=32.13 Aligned_cols=122 Identities=17% Similarity=0.172 Sum_probs=69.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC-C---CC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG-H---IT 109 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~-~---~~ 109 (315)
....+.|.-|||||-|.+++..|. +.||..-+-.-.+.....+|+...-.+. +.-.+.|.+.|.+.. . ..
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 456788999999999999999999 6888865443222222234444332221 112566666775432 1 11
Q ss_pred CC--cccCCceeeeec--CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 021245 110 AG--AKTWPSKQVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (315)
Q Consensus 110 ~~--~~~~~~~~v~~~--~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~ 162 (315)
.. .+...+--|--. ...+--.+.+.-|.|||-|.+...+|. -+.||..-+=.
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 10 000000000000 111234567889999999999999776 67788766653
No 227
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=79.48 E-value=3.4 Score=34.68 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.5
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
+-.++...-.+.||+++.+++.++++||+|..+-
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~ 127 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQII 127 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence 4445555557889999999999999999998754
No 228
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=78.67 E-value=16 Score=39.59 Aligned_cols=88 Identities=10% Similarity=0.048 Sum_probs=60.0
Q ss_pred HHHHHhhc---CCCeEEEecCCCC-CeEEEEE---EecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcC
Q 021245 13 YESLSLRI---NPPRASVDNSSCP-ECTVVKV---DSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQ 84 (315)
Q Consensus 13 h~~~~~~~---~~~~v~i~~~~~~-~~~~v~V---~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~ 84 (315)
+.+++.+. .+|.+.+...... ....+.+ ..+...|+|+.++..+..+||.+..+.+-+ .+|..+-+|+|...
T Consensus 204 y~~~~~~~~~~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 204 IQELLNRQVSSVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 55555443 3788888865522 3334444 345667899999999999999999999988 47888889999976
Q ss_pred CCCCCCChhHHHHHHH
Q 021245 85 QGKKITDGKTIDYIEK 100 (315)
Q Consensus 85 ~g~~~~~~~~~~~l~~ 100 (315)
.+....+..+.+++++
T Consensus 284 ~~~~~~~~~~~~~~~~ 299 (1002)
T PTZ00324 284 TADDNPDLSIEDRASL 299 (1002)
T ss_pred CCCCcccccHHHHHHh
Confidence 5543223334555554
No 229
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=78.26 E-value=12 Score=36.32 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK 87 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~ 87 (315)
..+.+.+..+|+||.|+++.+.|+..|+|...-.-.. .++.+--.|+|. -+|.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid-~eg~ 349 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLD-VQAN 349 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEE-EeCC
Confidence 3666667778999999999999999999999433332 333222346664 4454
No 230
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=77.90 E-value=15 Score=25.47 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.1
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEE
Q 021245 135 GRDRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 135 ~~DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
.+|+||.++++.+.|+++|++|....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 47999999999999999999998543
No 231
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.72 E-value=18 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=31.0
Q ss_pred EEEEE--E-ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245 36 TVVKV--D-SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID 83 (315)
Q Consensus 36 ~~v~V--~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~ 83 (315)
+.|+| . .++.||+++++..+|++.|+||. -|.+.. .--.|.+..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VD--mI~~s~--~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVD--LITTSE--ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEE--EEeecC--CEEEEEEec
Confidence 34555 2 47889999999999999999998 444422 223566654
No 232
>PRK08841 aspartate kinase; Validated
Probab=77.36 E-value=73 Score=30.89 Aligned_cols=92 Identities=12% Similarity=0.208 Sum_probs=57.7
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 113 (315)
+.+.|++.+ +.++++.+.|+..|+++. .+.+....+ .|.+.. .....++..+...
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~--~i~~~~~~~--~~~v~~---------~~~~~~~~~~~~~-------- 311 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVW--NVIEEADRA--QIVIKQ---------DACAKLKLVFDDK-------- 311 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEE--EEEecCCcE--EEEECH---------HHHHHHHHhCccc--------
Confidence 344455533 357899999999999888 334322211 344431 1122333222111
Q ss_pred cCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEE
Q 021245 114 TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 114 ~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
+. ...+...|.+.+...||+.+++..+|++.|+||..
T Consensus 312 ------i~--~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 312 ------IR--NSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred ------EE--EeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 11 12466789999999999999999999999999953
No 233
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=77.35 E-value=19 Score=25.78 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=37.5
Q ss_pred EEEEE---eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 130 AIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 130 ~i~i~---~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.|.+. ..+.||+++++.++|+++|+++..-- + ++ ..-.|.|.. . ....+...+..|.++|.+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~-~--~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDP-T--KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEc-h--hhccchHHHHHHHHHHHh
Confidence 45553 36789999999999999999995432 2 22 333455554 1 221112355566666644
No 234
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.26 E-value=25 Score=25.45 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=30.5
Q ss_pred EEEEE---eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 130 AIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 130 ~i~i~---~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
.|+|. .+++||++++|..+|+++|+||.--- + +. .--.|.|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 45552 57889999999999999999987542 2 22 334565554
No 235
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=77.24 E-value=52 Score=32.54 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.2
Q ss_pred CeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEE
Q 021245 267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 267 ~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
+..++.+.+ ...||....+.++|++.+|+|.+..
T Consensus 382 ~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 382 GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 455666664 4789999999999999999999876
No 236
>PRK14636 hypothetical protein; Provisional
Probab=76.33 E-value=44 Score=28.63 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 137 DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
|.+-+...+..++..+|+.+.+..+...++...-..+|.. +++..++ -+.++.+.+.|...|+...
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~-~~~ggV~-lDDC~~vSr~Is~~LD~~d 68 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAER-PDTRQLV-IEDCAALSRRLSDVFDELD 68 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEEC-CCCCCcC-HHHHHHHHHHHHHHhccCc
Confidence 3455677788899999999999998877644433444544 3333333 4688999999999998543
No 237
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=75.67 E-value=15 Score=29.96 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=42.9
Q ss_pred EecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEE
Q 021245 27 VDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI 82 (315)
Q Consensus 27 i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~ 82 (315)
+..-.......+.+.-.||.|.|+++..++++.++||+..+.+- .+|++--+..+.
T Consensus 64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 33333345667888999999999999999999999999777764 677775455543
No 238
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=75.55 E-value=27 Score=25.87 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=47.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHH
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKA 101 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~ 101 (315)
...+.+...++|+.|.++.++...-|+.|.....++ ++|.+--.|.|..+ .++ +-+..+|++.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~--R~~--~lL~~QLeKl 67 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD--RSV--DLLTSQLEKL 67 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC--CCh--HHHHHHHHHH
Confidence 457899999999999999999999999999999987 46666656777432 222 2344555554
No 239
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.49 E-value=16 Score=24.97 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=26.9
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 37 VVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 37 ~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.|.+.|. ++||..+++.+.|++.|++|.-....+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556655 789999999999999999998554434
No 240
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.28 E-value=7.1 Score=39.37 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=43.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHH
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIE 99 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~ 99 (315)
....+.+.-.|+||.++.++..|.+.|+||-..++.- .+|.++-.+.+. + .++ ++.+++|+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D---~-~v~-~~~l~~i~ 513 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD---D-PVP-EEVLEELR 513 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC---C-CCC-HHHHHHHh
Confidence 3444556679999999999999999999999888875 567776444442 2 232 34556655
No 241
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=74.28 E-value=3.6 Score=28.23 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=28.0
Q ss_pred eEEEEEe---CCCCchHHHHHhhhcCCceEEEEEEEEe
Q 021245 269 SVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (315)
Q Consensus 269 tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~AkI~T 303 (315)
+++.|.+ .++||++++|.++|.+.|+++....-++
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566666 4889999999999999999997764433
No 242
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.89 E-value=12 Score=24.72 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=29.5
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEe
Q 021245 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (315)
Q Consensus 135 ~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~ 176 (315)
.++.||.++++.+.|+++|++|........ ++...-+|.+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 578999999999999999999976544221 222334555544
No 243
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=73.73 E-value=25 Score=23.84 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=24.8
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 021245 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 130 ~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.|.+.| ++.||+++++.+.|++.|+++.-.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 355555 488999999999999999999754
No 244
>PRK08526 threonine dehydratase; Provisional
Probab=73.17 E-value=32 Score=33.46 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-----RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-----~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
......+.+.-+||||-|.+++..+.+.+.||.+..-.... +.+.-.+.+.- .+++..++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999887654421 23333333332 124566777777643
No 245
>PLN02550 threonine dehydratase
Probab=71.64 E-value=1.3e+02 Score=31.02 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=66.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCC----C
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH----I 108 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----~ 108 (315)
....+.|.-+|+||-|.+++..|... ||.+..-.- .-+.+. .++...-. .++..+.|.+.|....- +
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGVH-----TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeC
Confidence 34568899999999999999999986 777554432 222222 23333222 23456777777765421 1
Q ss_pred CC---Cc-ccCCceee-eecCCCceEEEEEEeCCcccHHHHHHHHHHh-CCceEEE
Q 021245 109 TA---GA-KTWPSKQV-GVHSVGDHTAIELIGRDRPGLLSEISAVLAN-LRFNVAA 158 (315)
Q Consensus 109 ~~---~~-~~~~~~~v-~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~-~~l~I~~ 158 (315)
.. ++ ++. .-+ ....-..--.+.+.-+.|||-|.+.+.+|.. .++.-.+
T Consensus 488 ~~~~~~~~~LR--~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~ 541 (591)
T PLN02550 488 TSNDLVKDHLR--YLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFH 541 (591)
T ss_pred CCChHHhhhhh--heeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEE
Confidence 11 01 000 000 0000122345678889999999999998875 2444433
No 246
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=70.75 E-value=7.3 Score=39.28 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=43.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (315)
...+.+.-.|+||.+..+...|.+.++||-..++.- .+|.++-.+.+. + +++ ++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D---~-~v~-~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD---Q-PVP-DEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC---C-CCC-HHHHHHHhc
Confidence 334556668999999999999999999999888874 567776444442 2 233 345566653
No 247
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.46 E-value=16 Score=23.97 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.5
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEE
Q 021245 42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI 82 (315)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~ 82 (315)
.+|.+|.++++...|...|++|....... .+|...-.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 57899999999999999999997655533 223233346554
No 248
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=70.16 E-value=31 Score=25.53 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=48.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
.+.+.+.+.++|+.|-++.++....|..|......+. ++.+.--|.|.. .++ .+.|...|.+..+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~------~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRS------VDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCC------hHHHHHHHHHHcc
Confidence 4688999999999999999999999999998888775 355555566643 133 2556677765543
No 249
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=69.80 E-value=9.4 Score=24.84 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=23.7
Q ss_pred EEEEeCC---cccHHHHHHHHHHhCCceEEEE
Q 021245 131 IELIGRD---RPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 131 i~i~~~D---rpgLl~~i~~~l~~~~l~I~~A 159 (315)
|++.+.+ .+|.++++.++|++++++|...
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 4455444 8999999999999999999754
No 250
>PRK06349 homoserine dehydrogenase; Provisional
Probab=69.67 E-value=17 Score=35.64 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=38.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID 83 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~ 83 (315)
...-|.+...|+||.|++|++.|.+.|++|.+......++......++++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 44678889999999999999999999999996655443333445566664
No 251
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.54 E-value=38 Score=24.41 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=37.0
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 135 ~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.++.||+++++.++|+++|+||.--- + +. .--.|.|.. .. ..+.+ +.++.|.++|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~-~~-~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDP-DP-NGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeC-cc-cccch-HHHHHHHHHHHh
Confidence 45889999999999999999987652 2 22 334555554 21 11322 356677777754
No 252
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=69.39 E-value=5.7 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=24.7
Q ss_pred EEEEeC---CCCchHHHHHhhhcCCceEEEEEEE
Q 021245 271 VNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAI 301 (315)
Q Consensus 271 ieV~a~---DRpGLL~~I~~~l~~~~i~I~~AkI 301 (315)
+.|.+. +.||.+.++.++|.+.+++|...--
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 444444 4899999999999999999987643
No 253
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=68.91 E-value=39 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=23.6
Q ss_pred EEEEE---ecCCccHHHHHHHHHHhCCceEE
Q 021245 37 VVKVD---SVNKPGILLEVVQVLSDLDLIIT 64 (315)
Q Consensus 37 ~v~V~---~~DrpGLl~~i~~~L~~~glnI~ 64 (315)
.|++. ..+.+|+++++..+|++.|+++.
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~ 33 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVD 33 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEE
Confidence 45564 35789999999999999999996
No 254
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=68.86 E-value=33 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=27.0
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245 43 VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID 83 (315)
Q Consensus 43 ~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~ 83 (315)
.+++|+.+++.++|++.|+++. -|.+.... -.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~--~i~t~~~~--is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVD--LIPTSENS--VTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEE--EEecCCCE--EEEEEeh
Confidence 4779999999999999999999 44443322 2466654
No 255
>PRK11898 prephenate dehydratase; Provisional
Probab=68.16 E-value=32 Score=31.75 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=35.3
Q ss_pred eEEEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 128 HTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 128 ~t~i~i~~~D-rpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.+.+.+..++ +||-|+++..+|+.+|+|+..-...-.. ....=.|+|.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4555556555 6999999999999999999876655433 33445677764
No 256
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=67.37 E-value=15 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.8
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEE
Q 021245 37 VVKVDSV---NKPGILLEVVQVLSDLDLIIT 64 (315)
Q Consensus 37 ~v~V~~~---DrpGLl~~i~~~L~~~glnI~ 64 (315)
.|.|.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4667775 789999999999999999996
No 257
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=67.23 E-value=1e+02 Score=33.09 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=27.2
Q ss_pred CceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 021245 126 GDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 126 ~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.+.+.|+|.+ .+.+|++++|.+.|+++|+||.-.
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 3556777753 468999999999999999999654
No 258
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=67.09 E-value=11 Score=30.73 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=40.2
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEe
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~ 176 (315)
..-..+.+.-.||.|.|+++..++++.++||....=.- ..|++--+..+..
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 35578889999999999999999999999998655332 3477766666655
No 259
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=66.93 E-value=25 Score=23.23 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=25.8
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEE
Q 021245 37 VVKVDSV---NKPGILLEVVQVLSDLDLIITKAYI 68 (315)
Q Consensus 37 ~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I 68 (315)
.|++.+. +.+|+++++...|++.|.++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3566554 8899999999999999999975444
No 260
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=65.70 E-value=20 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.6
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEE
Q 021245 42 SVNKPGILLEVVQVLSDLDLIITKAYI 68 (315)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I 68 (315)
.+|.||.+++++..|++.|++|.-...
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 479999999999999999999984444
No 261
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.82 E-value=41 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=25.0
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
.|.+.|. ++||+++++.++|+++|+++.-..
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~ 36 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMIS 36 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 4555554 789999999999999999997543
No 262
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.28 E-value=37 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=26.7
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 37 VVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 37 ~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.|.+.|. +.+|+++++...|++.|++|.-....+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 779999999999999999997554433
No 263
>PRK08526 threonine dehydratase; Provisional
Probab=63.82 E-value=36 Score=33.06 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=45.9
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eC---CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DG---GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~---g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.....+.|.-+|+||-|++++..+.+.|.||.+..-.. .+ +.+. +....... +++..++|.+.|.+.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~-~~~~~e~~-----~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAM-ISITLETK-----GKEHQEEIRKILTEK 395 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEE-EEEEEEeC-----CHHHHHHHHHHHHHC
Confidence 35667889999999999999999999999999766643 11 3332 22333222 235677777777543
No 264
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.92 E-value=40 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=26.8
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 37 VVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 37 ~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.|.+.|. +.+|+.+++...|++.|+++.-.....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556664 789999999999999999998554433
No 265
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.83 E-value=46 Score=22.39 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=24.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
.|.+.|. +.+|+++++.+.|+++|+++.-..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMIS 36 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4555554 789999999999999999997543
No 266
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=61.83 E-value=44 Score=32.84 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=37.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.+.|.+..+|+||-|+++..+|+.+|+|+..-...-.. ....=.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 46777777999999999999999999999876654332 22334677865
No 267
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=61.01 E-value=48 Score=22.33 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=27.6
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 135 ~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
..+++|+.+++.++|+++|+++.-. +.+. .--.|.+..
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i---~t~~-~~is~~v~~ 47 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLI---PTSE-NSVTLYLDD 47 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEE---ecCC-CEEEEEEeh
Confidence 3478999999999999999998764 2222 334566654
No 268
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=60.22 E-value=83 Score=30.58 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~-t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
......+.+.-+||||-|.+++..+...+.||...+-. ..+ +...-.+-+.- .+++..+.|.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-------NDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 45667899999999999999999666777799865544 222 22222232322 123566777777744
No 269
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=60.20 E-value=49 Score=32.21 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=43.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-eeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.....+.+.-|||||-|.+++..+...+.||..-+-. ..+ +.. .........+ ++..+.|.+.|.+.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~-~v~v~iE~~~-----~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETG-PALIGIELND-----KEDFAGLLERMAAA 391 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeE-EEEEEEEeCC-----HHHHHHHHHHHHHC
Confidence 3566789999999999999999788788899955444 212 222 2222222222 34567788887664
No 270
>PRK08639 threonine dehydratase; Validated
Probab=59.41 E-value=74 Score=31.01 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
+.....+.+.-+||||-|.+++..+...+.||...+=.- .+.....++..-. . .+++..++|.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE-~-----~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE-L-----KDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE-e-----CCHHHHHHHHHHHHH
Confidence 456788999999999999999996666666998765432 2211112222222 1 124566777777754
No 271
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=59.34 E-value=2e+02 Score=30.82 Aligned_cols=33 Identities=24% Similarity=0.152 Sum_probs=27.0
Q ss_pred ceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 021245 127 DHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 127 ~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
+.+.|+|.+. +.+|.++++.++|+++|++|.-.
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i 351 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAV 351 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEE
Confidence 4556777665 77899999999999999998654
No 272
>PLN02317 arogenate dehydratase
Probab=58.70 E-value=72 Score=30.85 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=30.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
.|.|.+.-+|+||.|+++..+|+.+|+|+..-+..-.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 4667777789999999999999999999987665443
No 273
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=58.16 E-value=51 Score=32.65 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=38.3
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCe-EE-EEEEEEe
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR-IA-CVLYVND 176 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~-~~-d~F~V~~ 176 (315)
...+.|.+..+|+||-|+++.++|+.+|+|+..-...-..+. .. -.|+|.-
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 355677777799999999999999999999987665444333 33 4677765
No 274
>PRK11898 prephenate dehydratase; Provisional
Probab=57.41 E-value=52 Score=30.33 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.6
Q ss_pred CeEEEEEEecC-CccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 34 ECTVVKVDSVN-KPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 34 ~~~~v~V~~~D-rpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
..+.|.+..++ +||-|+++...|+..|+|+. +|-+
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt--~IeS 230 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLT--RIES 230 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCee--eEec
Confidence 34556566554 69999999999999999999 5544
No 275
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.58 E-value=59 Score=23.41 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=35.2
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 42 SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
.++.+|+++++.++|++.|+||. -|.+.. .--.|.+.... .++.. +..+.|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vD--mI~~s~--~~isftv~~~~-~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVD--LVSTSE--TNVTVSLDPDP-NGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEE--EEEeCC--CEEEEEEeCcc-cccch-HHHHHHHHHHHh
Confidence 35789999999999999999998 444422 22346665432 11222 244555555544
No 276
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=54.76 E-value=16 Score=36.73 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
.+.|.|.||.|+-.+|...|..+++|+....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999998664
No 277
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=53.89 E-value=60 Score=21.25 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=24.4
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.|++.+. +++|+++++...|++.++++...
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i 34 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMI 34 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 3556544 88999999999999999999654
No 278
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=53.40 E-value=72 Score=22.61 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=37.5
Q ss_pred EEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 37 VVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 37 ~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
.|++.+ .+.+|+++++...|++.|+++.-....+.+. . -.|.+...+. .+..+.|.+.+..
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~-~-isf~v~~~d~-----~~~~~~l~~~~~~ 66 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEH-S-ISFVVDESDA-----DKALEALEEEFAL 66 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcc-e-EEEEEeHHHH-----HHHHHHHHHHHHh
Confidence 456643 3789999999999999999998555443332 1 1355543211 2345556666643
No 279
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.14 E-value=68 Score=21.58 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=25.2
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
.|.+.|. ++||+.+++...|++.|+++.-..
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 36 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMIN 36 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 3555654 789999999999999999997553
No 280
>PRK08639 threonine dehydratase; Validated
Probab=51.95 E-value=79 Score=30.84 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=43.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.....+.+.-|||||-|.+++..+...+.||..-+-.- .+...-..+....-.+ ++..++|++.|.+.
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-----~~h~~~i~~~L~~~ 402 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-----AEDYDGLIERMEAF 402 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-----HHHHHHHHHHHHHC
Confidence 35567899999999999999997777777999765432 1111112222222112 34567788888664
No 281
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.85 E-value=76 Score=21.79 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=21.7
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceE
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNV 156 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I 156 (315)
.|.+.|. +.||+++++.++|++.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 3556664 78999999999999988776
No 282
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=51.70 E-value=85 Score=22.48 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 136 ~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
.-.||+++++.+.|+++|+||.--- + ++ .--.|.+.. . .+.+ +.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~---~-~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM---E-NAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh---h-hcCh-HHHHHHHHHHHH
Confidence 3569999999999999999987542 2 22 333455543 1 2221 266677777754
No 283
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=51.69 E-value=84 Score=22.24 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=24.7
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 021245 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 130 ~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
.|.+.+ .+.+|+++++.++|+++++++.-..
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILIS 36 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 455543 4789999999999999999997543
No 284
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=51.63 E-value=22 Score=35.73 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=32.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG 72 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~ 72 (315)
.+.|.|.||.|+..++...|...++|+....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999987654
No 285
>PRK12483 threonine dehydratase; Reviewed
Probab=51.27 E-value=2.8e+02 Score=28.09 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=72.3
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHH-HHHHHHHHHHHcCC
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL-SLMEEQLKNILRGC 203 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~-~~l~~~L~~~L~~~ 203 (315)
......+.|.-+||||-|.+++.+|... ||....-...+..-..++..-. .. +++.. +.|.+.|.+ .+-
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~~-----~~~~~~~~i~~~l~~--~g~ 411 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQ-TH-----PRHDPRAQLLASLRA--QGF 411 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEE-eC-----ChhhhHHHHHHHHHH--CCC
Confidence 4466788899999999999999999988 7776554433322233333333 11 22343 566666643 121
Q ss_pred CCCccccccccccccccccchhhhH-hhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchH
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLH-QMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLM 282 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL 282 (315)
...+... . . +- ++| +.|...+ .+.+ .+-.++.|.=+.|||=|
T Consensus 412 ~~~dlsd---n--e-----~~-k~h~r~~~g~~---------------~~~~-----------~~E~~~~v~iPE~pGa~ 454 (521)
T PRK12483 412 PVLDLTD---D--E-----LA-KLHIRHMVGGR---------------APLA-----------HDERLFRFEFPERPGAL 454 (521)
T ss_pred CeEECCC---C--H-----HH-HHHHHhccCCC---------------CCCC-----------CceEEEEEEcCCCCcHH
Confidence 1100000 0 0 00 111 1121100 1001 11246667889999999
Q ss_pred HHHHhhhcC-CceEEEEEEE
Q 021245 283 FDIVCTLTD-MQYVVFHAAI 301 (315)
Q Consensus 283 ~~I~~~l~~-~~i~I~~AkI 301 (315)
-+.+++|.. .+|..++=+.
T Consensus 455 ~~f~~~l~~~~niTeF~YR~ 474 (521)
T PRK12483 455 MKFLSRLGPRWNISLFHYRN 474 (521)
T ss_pred HHHHHHhCCCcceeeeeecC
Confidence 999999998 5888876654
No 286
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.98 E-value=15 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=27.7
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 135 ~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
.++.||+++++..+|+++|+||.-.- + +. .--.|.|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 46889999999999999999987542 2 22 333455554
No 287
>PRK00907 hypothetical protein; Provisional
Probab=50.06 E-value=1e+02 Score=23.47 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=44.0
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe----eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t----~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L 196 (315)
..+.+.|.|.++++|...|..++..+.-......+.. .|.+..-++.|.- .+.++++.|=++|
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-------ts~eQld~iY~~L 82 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-------ESREQYDAAHQAL 82 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 4588999999999999999999998877666565543 3445555566654 1235665555555
No 288
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=49.47 E-value=30 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=24.4
Q ss_pred EEEEEeC-CcccHHHHHHHHHHhCCceEEEE
Q 021245 130 AIELIGR-DRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 130 ~i~i~~~-DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.|+|.+. +.||.+++|.+.|+++|+||.--
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 4555543 66999999999999999999865
No 289
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=49.40 E-value=74 Score=20.98 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=24.1
Q ss_pred EEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 021245 131 IELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 131 i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
|.+.+ ++.||+++++.+.|++.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 44543 5779999999999999999996543
No 290
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=48.77 E-value=68 Score=31.59 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=30.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
.+.|.+..+|+||-|+++..+|+..|+|+. +|-+
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLt--hIES 49 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLT--HIES 49 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCee--EEec
Confidence 577777779999999999999999999999 6655
No 291
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=48.06 E-value=53 Score=23.03 Aligned_cols=33 Identities=3% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCC
Q 021245 53 VQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ 85 (315)
Q Consensus 53 ~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~ 85 (315)
.......|..++.=.+.|.||+.+..+.|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999997643
No 292
>PLN02317 arogenate dehydratase
Probab=47.32 E-value=39 Score=32.70 Aligned_cols=36 Identities=3% Similarity=0.082 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEec
Q 021245 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD 304 (315)
Q Consensus 269 tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~ 304 (315)
|-|-+.-.|+||.|+++..+|+..|||+.+-.-.-.
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 555466789999999999999999999987764443
No 293
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=47.08 E-value=33 Score=27.43 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCCCEEEEeecCCCCeeEEEEEe---CCCCchHHHHHhhhcCCceEEEE
Q 021245 253 SFKPEITVERLEDKGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFH 298 (315)
Q Consensus 253 ~~~~~V~i~~~~~~~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~ 298 (315)
.+|..|+++ .++..+.+.. -|-+|+|..|.+.|++.||.|+.
T Consensus 52 ~vp~~V~~~----~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa 96 (128)
T COG3603 52 RVPDVVQIE----KGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA 96 (128)
T ss_pred cCCcceEec----CCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE
Confidence 456666655 4666666664 49999999999999999999985
No 294
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.61 E-value=83 Score=20.73 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=24.1
Q ss_pred EEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 021245 131 IELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 131 i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
|++.+ .+.||+++++...|+++|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45554 4779999999999999999996543
No 295
>PRK14646 hypothetical protein; Provisional
Probab=46.15 E-value=1.8e+02 Score=24.34 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeecCC
Q 021245 47 GILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSV 125 (315)
Q Consensus 47 GLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~ 125 (315)
-+...+..++..+|+.+.+..+...+ ++++ ..++..++|..++- +-++.+-+.+.+.++.. ++-
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~-------------D~i 72 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISL-DDCALFNTPASEEIENS-------------NLL 72 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccH-HHHHHHHHHHHHHhCcC-------------CCC
Confidence 35667788899999999999988754 5555 55554333433432 34566666666555421 122
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCce
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFN 155 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~ 155 (315)
++.+.++|.+|-=-.-|...-.+-.-.|-.
T Consensus 73 ~~~Y~LEVSSPGldRpL~~~~df~r~~G~~ 102 (155)
T PRK14646 73 NCSYVLEISSQGVSDELTSERDFKTFKGFP 102 (155)
T ss_pred CCCeEEEEcCCCCCCcCCCHHHHHHhCCCE
Confidence 345666666553333344444444444444
No 296
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=45.84 E-value=1.7e+02 Score=29.35 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=41.5
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
..-..+.|.-+||||-|.+++++|+. .||...+-.-.+.....+|..-. - .+++..+.|.+.|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie-~-----~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ-L-----SNPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE-e-----CCHHHHHHHHHHHHH
Confidence 45577889999999999999999997 46665544333322233443333 1 124566777777744
No 297
>PRK09224 threonine dehydratase; Reviewed
Probab=45.08 E-value=1.7e+02 Score=29.40 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=40.2
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHH-HHHHHHHHHH
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR-LSLMEEQLKN 198 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~-~~~l~~~L~~ 198 (315)
..-..+.|.-+||||-|.+++..|. +.||...+-.-.+.....+|..-. .. +++. .+.|.+.|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie-~~-----~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQ-LS-----RGQEERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEE-eC-----ChhhHHHHHHHHHHH
Confidence 3557888999999999999999999 577766543333322233333323 11 1223 5667777744
No 298
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=44.64 E-value=5.6e+02 Score=29.71 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=113.7
Q ss_pred CeEEEecCCCCCeEEEEEEec-CCcc--HHHHHHHHHHh-CCceEEEEEEE-eeCCEEEEEEEEEcCCCCC--CCChhHH
Q 021245 23 PRASVDNSSCPECTVVKVDSV-NKPG--ILLEVVQVLSD-LDLIITKAYIS-SDGGWFMDVFHVIDQQGKK--ITDGKTI 95 (315)
Q Consensus 23 ~~v~i~~~~~~~~~~v~V~~~-DrpG--Ll~~i~~~L~~-~glnI~~A~I~-t~~g~~~d~f~v~~~~g~~--~~~~~~~ 95 (315)
..+-++.+....+..+.|+.| |+-. +-.+|-..|.+ +|....+-... ..+..+---|++....+.. +....+.
T Consensus 329 vRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le 408 (1528)
T PF05088_consen 329 VRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALE 408 (1528)
T ss_pred eeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHH
Confidence 466667777777777777766 5544 67788888776 45555544443 3556666667776655543 2222333
Q ss_pred HHHHHHHC-----------CCCCC--------------CCCcc-----------------cC--Cceeeee----cCCCc
Q 021245 96 DYIEKALG-----------PKGHI--------------TAGAK-----------------TW--PSKQVGV----HSVGD 127 (315)
Q Consensus 96 ~~l~~~L~-----------~~~~~--------------~~~~~-----------------~~--~~~~v~~----~~~~~ 127 (315)
++|..+.. ..... |..++ +. -+..++. ...++
T Consensus 409 ~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~ 488 (1528)
T PF05088_consen 409 ARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPG 488 (1528)
T ss_pred HHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCC
Confidence 33333222 11100 00000 01 1122332 23446
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee---C--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH---N--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
.+.+.++...++..|+++.-+|...|+.|.+.+-+.. + ...+..|.+.. +.+..++..+..+.++++|..+..+
T Consensus 489 ~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 489 RLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred eEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999887653 2 23667899988 6665444455667888899888877
Q ss_pred CCC
Q 021245 203 CDD 205 (315)
Q Consensus 203 ~~~ 205 (315)
...
T Consensus 568 ~~e 570 (1528)
T PF05088_consen 568 RAE 570 (1528)
T ss_pred CCC
Confidence 654
No 299
>PRK00907 hypothetical protein; Provisional
Probab=44.43 E-value=1.1e+02 Score=23.18 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=45.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe----eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS----DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t----~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
..-+.|.|.+++++...|..++..+.-......+.. .|.+..-++.|.- +..+-+..|-+.|...
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~~ 85 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRDH 85 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 367899999999999999999999887766667643 4445544455542 2234567777777653
No 300
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=44.43 E-value=43 Score=22.21 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.3
Q ss_pred EEEEe---cCCccHHHHHHHHHHhCCceEEEEE
Q 021245 38 VKVDS---VNKPGILLEVVQVLSDLDLIITKAY 67 (315)
Q Consensus 38 v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~ 67 (315)
|+|.+ ++.+|++.++.+.|++.|+++.-..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55554 4779999999999999999997443
No 301
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=44.05 E-value=67 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=32.2
Q ss_pred CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 31 SCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 31 ~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
...+.+.|.+..+|+||-|+++...|+..|+|+. +|-+
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLT--hIES 64 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINIL--HLES 64 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEE--EEEC
Confidence 3446677777789999999999999999999999 6655
No 302
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.85 E-value=25 Score=25.76 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=28.1
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245 42 SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID 83 (315)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~ 83 (315)
.++.||..+++...|++.|+||. -|.+.. .--.|.+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVD--mI~qs~--~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVD--VVATSE--VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEE--EEEecC--CEEEEEEEh
Confidence 36889999999999999999998 444422 223566654
No 303
>PRK14634 hypothetical protein; Provisional
Probab=40.93 E-value=2.1e+02 Score=23.83 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeecC
Q 021245 46 PGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHS 124 (315)
Q Consensus 46 pGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~ 124 (315)
..+...+..++..+|+.+.+..+... +++++ ..+|..++|..++- +-++.+-+.+...++... +
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d-------------~ 71 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQ-------------L 71 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCcccH-HHHHHHHHHHHHHhcccc-------------c
Confidence 44566777888999999999998874 45665 45554455633432 346666666665554211 1
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCce
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFN 155 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~ 155 (315)
-++.+.++|.+|-=-.-|......-...|-.
T Consensus 72 i~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~ 102 (155)
T PRK14634 72 LTEAYVLEISSPGIGDQLSSDRDFQTFRGFP 102 (155)
T ss_pred CCCCeEEEEeCCCCCCcCCCHHHHHHhCCCe
Confidence 1245666776553222233444444444443
No 304
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=40.39 E-value=50 Score=23.12 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=30.4
Q ss_pred EEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245 37 VVKVDSV-NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID 83 (315)
Q Consensus 37 ~v~V~~~-DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~ 83 (315)
.|+|.+. +.||..+++.+.|++.|+||---..+ .+. -.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 4566644 67999999999999999999866333 222 3466653
No 305
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=40.36 E-value=1.5e+02 Score=29.79 Aligned_cols=134 Identities=20% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC-C---
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG-H--- 107 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~-~--- 107 (315)
.....+.|.-|||||-|.+++.+|.. .||...+-.- ..+.+ .+|+...-. .++..+.|.+.|.+.. .
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a-~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~d 394 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDA-HIFVGVQLS-----NPQERQEILARLNDGGYSVVD 394 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeE-EEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEE
Confidence 35567889999999999999999997 5777555432 22332 344444322 2345677777775532 1
Q ss_pred CCCC--cccCCceeeeec--CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC---CeEEEEEEEE
Q 021245 108 ITAG--AKTWPSKQVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN---RRIACVLYVN 175 (315)
Q Consensus 108 ~~~~--~~~~~~~~v~~~--~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~---~~~~d~F~V~ 175 (315)
.... .+...+--|--. ...+--...+.-|.|||-|.+...+| .-+.||..-+=--.+ |+++-=|.+.
T Consensus 395 ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Yr~~~~~~g~~l~gi~~~ 468 (499)
T TIGR01124 395 LTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHYRNHGADYGRVLAGFQVP 468 (499)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEEecCCcccCCEEEEEecC
Confidence 1110 000000000000 01122356678999999988887755 334566555442222 4455555553
No 306
>PRK14636 hypothetical protein; Provisional
Probab=38.27 E-value=2.5e+02 Score=23.95 Aligned_cols=61 Identities=5% Similarity=-0.028 Sum_probs=37.8
Q ss_pred CccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCC
Q 021245 45 KPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH 107 (315)
Q Consensus 45 rpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~ 107 (315)
.+-+...+..++..+|+.+.+..+...+ ++++ ..+|..+.|..++- +-++.+-+.+...++
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~l-rV~ID~~~~ggV~l-DDC~~vSr~Is~~LD 65 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTL-QIMAERPDTRQLVI-EDCAALSRRLSDVFD 65 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEE-EEEEECCCCCCcCH-HHHHHHHHHHHHHhc
Confidence 3445667788899999999999987754 5555 45554343322332 345566666655543
No 307
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=94 Score=24.91 Aligned_cols=38 Identities=29% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245 33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDG 72 (315)
Q Consensus 33 ~~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~ 72 (315)
++...+.+.++ |-+|+++.+.+.|++.|+-|. -++|.+
T Consensus 61 ~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIF--avStyd 101 (128)
T COG3603 61 KGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIF--AVSTYD 101 (128)
T ss_pred CCeEEEEEeccccCCcchhhhhhhhhHhhCCccEE--EEEecc
Confidence 46667777665 899999999999999999998 566644
No 308
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=33.00 E-value=1.9e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=36.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~ 89 (315)
.....+.+...| +..+...|...|.+|...-....++. ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455667777777 67777888999999986644333222 3699999999864
No 309
>PLN02828 formyltetrahydrofolate deformylase
Probab=32.52 E-value=4e+02 Score=24.46 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=22.8
Q ss_pred HHHHHHhCCceEEEEEEEe--eCCEEEEEEEE
Q 021245 52 VVQVLSDLDLIITKAYISS--DGGWFMDVFHV 81 (315)
Q Consensus 52 i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v 81 (315)
+++.|+++|+||.+++.++ .+|++.-...+
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~ 32 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEF 32 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEE
Confidence 4688999999999999998 45666544333
No 310
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=31.79 E-value=56 Score=27.38 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=27.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEE
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~ 65 (315)
...+.|.-+|+||-|-++.+=|+..|.||..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 3567888999999999999999999999993
No 311
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=31.05 E-value=1e+02 Score=29.87 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~ 162 (315)
.+.|.|.||-||..++...|...++|+....|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 478999999999999999999999999888873
No 312
>PRK02047 hypothetical protein; Provisional
Probab=31.04 E-value=2.3e+02 Score=21.31 Aligned_cols=66 Identities=24% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe---eCC-EEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS---DGG-WFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g-~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
+-...+.|.+++.+++...+..++..+...+..+.+.+ .+| +..-+..+. +.+++.+..|-+.|..
T Consensus 14 Pc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~------v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 14 PSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR------ATSREQLDNIYRALTG 83 (91)
T ss_pred CCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 34578899999999999999999999988777777765 334 444333333 2223456666666654
No 313
>PRK05925 aspartate kinase; Provisional
Probab=30.33 E-value=5.4e+02 Score=25.35 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=60.6
Q ss_pred eEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245 35 CTVVKVDSV-NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (315)
Q Consensus 35 ~~~v~V~~~-DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 113 (315)
.+.|++.+. ..+|.++++.+.|++.|++|.-. .+.. . --.|.+...+ .. ....+.|...+....
T Consensus 300 ~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i--~s~~-~-sis~~i~~~~---~~-~~~~~~l~~~l~~~~------- 364 (440)
T PRK05925 300 QALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV--MAQN-L-GVYFTIDDDD---IS-EEYPQHLTDALSAFG------- 364 (440)
T ss_pred EEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE--eccC-C-EEEEEEechh---cc-HHHHHHHHHHhcCCc-------
Confidence 344555432 25677999999999999999633 2222 1 2246665321 11 123344444433211
Q ss_pred cCCceeeeecCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEE
Q 021245 114 TWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 114 ~~~~~~v~~~~~~~~t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
+ +. ...+...|.|.|. -++|+++++..+|++.|+||..
T Consensus 365 ---~--i~--~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 ---T--VS--CEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred ---e--EE--EECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 1 11 1235667777765 2378999999999999999964
No 314
>PRK14645 hypothetical protein; Provisional
Probab=29.99 E-value=3.3e+02 Score=22.72 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=37.9
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCC
Q 021245 44 NKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH 107 (315)
Q Consensus 44 DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~ 107 (315)
+...+-..+..++..+|+.+.+..+...+ ++++ ..+|...+|..++- +-+..+-+.+...++
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~il-rV~ID~~~~~~v~l-ddC~~vSr~is~~LD 69 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIV-LVRIDRKDEQPVTV-EDLERASRALEAELD 69 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCcCH-HHHHHHHHHHHHHhc
Confidence 33446677788999999999999988754 5555 44554233333332 235555555554443
No 315
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.75 E-value=1.9e+02 Score=19.81 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=23.4
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCceEEEE
Q 021245 130 AIELIGR--DRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 130 ~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.|.+.|. ..+|+++++..+|++.|++|.-.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i 34 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMI 34 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 3445544 56899999999999999998643
No 316
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=29.54 E-value=1.1e+02 Score=34.46 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=38.3
Q ss_pred CCCeEEEecCCCC--CeEEEEEEecCCccHHHHHHHHHHhCCceEEE
Q 021245 21 NPPRASVDNSSCP--ECTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65 (315)
Q Consensus 21 ~~~~v~i~~~~~~--~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~ 65 (315)
+.|.|.+.+...+ .++.|+|+.+|.|-|+--|.+.|.++|+.++-
T Consensus 72 ~~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~ 118 (1592)
T COG2902 72 GAPCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHL 118 (1592)
T ss_pred CCceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEE
Confidence 3688888854443 45899999999999999999999999999884
No 317
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=28.39 E-value=2e+02 Score=19.82 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=23.2
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCceEEE
Q 021245 130 AIELIGR--DRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 130 ~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
.|.+.|. .+||+++++.++|++.|+++..
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~ 34 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIA 34 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEE
Confidence 4555553 3689999999999999999864
No 318
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.21 E-value=2.5e+02 Score=20.49 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=29.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~ 82 (315)
.+.|.-|.|||-|.+.+..|. -+.||..-+=.-.++....+|+-.
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi 47 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGI 47 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEE
Confidence 356778999999999999994 378888555443333333334433
No 319
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=27.17 E-value=87 Score=26.28 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.5
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
....+.|.-+|+||-|-.+..=|+..|.||...
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 456788999999999999999999999999854
No 320
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.05 E-value=2.1e+02 Score=19.26 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=26.6
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.|.+.|. ++||+++++..+|++.++.+ .+.+ ....-.|.|..
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~-----i~~~~s~~~is~~V~~ 48 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM-----ICYGASNHNLCFLVKE 48 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE-----EEEecCccEEEEEEeH
Confidence 4566665 78999999999997644433 2333 33344466654
No 321
>PRK14637 hypothetical protein; Provisional
Probab=25.60 E-value=3.9e+02 Score=22.16 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 137 DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
---|-...+..++...|+.+.+.++...++ ..+-+| |.. +.| ++ -+..+.+.+.+.+.|+.
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~-~~g--V~-iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYS-AGG--VG-LDDCARVHRILVPRLEA 67 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EEC-CCC--CC-HHHHHHHHHHHHHHhcc
Confidence 345788899999999999999999998764 455444 433 334 32 46788999998888864
No 322
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.34 E-value=1.7e+02 Score=21.73 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=35.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~ 89 (315)
+...+.+...|... +..+...+...|.+|...-.....|+ .+++.|++|+.+
T Consensus 59 ~~~~~~~~v~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAA-VDALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHH-HHHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 44567777777555 46667777789999886433333444 478999999864
No 323
>PRK00341 hypothetical protein; Provisional
Probab=24.11 E-value=3.2e+02 Score=20.60 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=42.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe---eCCEE-EEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWF-MDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g~~-~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
...+.|.|.+.+++...|..++..+. ......+.+ .+|.+ .-++.+. +..++.+..|-+.|..
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~------~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV------ATDEDQLQDINSALRA 83 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 37899999999999999999998776 776676654 34544 3333333 2223456666666654
No 324
>PLN02550 threonine dehydratase
Probab=23.88 E-value=8.1e+02 Score=25.25 Aligned_cols=126 Identities=9% Similarity=0.160 Sum_probs=71.3
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCC
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDD 205 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 205 (315)
....+.|.-+||||-|.+++.+|... ||.+..-.-.+ +.+.-.+-|.- .+++..+.|.+.|.+ .+-..
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~l~~--~g~~~ 484 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-------HTEQELQALKKRMES--AQLRT 484 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-------CCHHHHHHHHHHHHH--CCCCe
Confidence 44678899999999999999999986 77655443322 33333333332 124566777777744 11110
Q ss_pred CccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHH
Q 021245 206 EDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDI 285 (315)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I 285 (315)
.. .+...++ ..||+- +.. ...++ .+ --++.|.=+.|||-|-..
T Consensus 485 ----~~-l~~~~~~----~~~LR~-v~g--------------------~ra~~--~~-----E~l~~v~fPErpGAl~~F 527 (591)
T PLN02550 485 ----VN-LTSNDLV----KDHLRY-LMG--------------------GRAIV--KD-----ELLYRFVFPERPGALMKF 527 (591)
T ss_pred ----Ee-CCCChHH----hhhhhh-eec--------------------ccccc--Cc-----eEEEEEEecCcCCHHHHH
Confidence 00 0000000 112211 100 01112 21 246677889999999999
Q ss_pred HhhhcC-CceEEEEEE
Q 021245 286 VCTLTD-MQYVVFHAA 300 (315)
Q Consensus 286 ~~~l~~-~~i~I~~Ak 300 (315)
...|.. .+|..++=+
T Consensus 528 l~~lg~~~nITeF~YR 543 (591)
T PLN02550 528 LDAFSPRWNISLFHYR 543 (591)
T ss_pred HHhhCCCCceeeEEee
Confidence 999998 488887766
No 325
>PRK14640 hypothetical protein; Provisional
Probab=23.72 E-value=4.2e+02 Score=21.91 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeecCCCc
Q 021245 48 ILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGD 127 (315)
Q Consensus 48 Ll~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~ 127 (315)
+-..+..++..+|+.+.+..+...++..+-..+|....|-.+ +-++.+-++|...++.. ++-++
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~l---ddC~~vSr~is~~LD~~-------------d~i~~ 71 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSV---ENCAEVSHQVGAIMDVE-------------DPITE 71 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhccc-------------ccCCC
Q ss_pred eEEEEEEeC--Ccc
Q 021245 128 HTAIELIGR--DRP 139 (315)
Q Consensus 128 ~t~i~i~~~--Drp 139 (315)
.+.++|.+| |||
T Consensus 72 ~Y~LEVSSPGl~Rp 85 (152)
T PRK14640 72 EYYLEVSSPGLDRP 85 (152)
T ss_pred CeEEEEeCCCCCCc
No 326
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=22.39 E-value=2.8e+02 Score=24.81 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=63.9
Q ss_pred eEEEecCCCC-CeEEEEEEecCCccHHHHHHHHHHhCCceEEE----EEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHH
Q 021245 24 RASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITK----AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYI 98 (315)
Q Consensus 24 ~v~i~~~~~~-~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~----A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l 98 (315)
.+.++..... -...|.+.+.++....++|-.+|...|.++-. ..+|..-|. +.+.. ... ..-+.+
T Consensus 80 ~~~yEg~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~----i~~~~---~~~---~~d~~~ 149 (234)
T PF01709_consen 80 EITYEGYGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGV----IEVSK---KDL---DEDELM 149 (234)
T ss_dssp EEEEEEEETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEE----EEEEH---CCS----HHHHH
T ss_pred EEEEEEEcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEE----EEEEe---CCC---ChHHHH
Confidence 5566553333 34477888999999999999999999998876 334554443 33332 111 122333
Q ss_pred HHHHCCCCCCCCCcccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 99 EKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (315)
Q Consensus 99 ~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t 163 (315)
+.+|.-... . |. .+.+. +.++| .|.-|..+...|...|+.|.++.+.=
T Consensus 150 e~aIe~Gae---------D--ve--~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~~ 197 (234)
T PF01709_consen 150 EDAIEAGAE---------D--VE--EDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELEY 197 (234)
T ss_dssp HHHHHHTES---------E--EE--ECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEEE
T ss_pred HHHHhCCCc---------E--ee--ecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEEE
Confidence 444432111 1 11 11233 44444 47889999999999999999888753
No 327
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=22.02 E-value=4.5e+02 Score=21.64 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
+-..+..++..+|+.+.+.++...++...-..+|.. ..| + +-+.++.+.+.+..+|+...
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~-~~g--v-~iddc~~~Sr~is~~LD~~d 68 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK-EGG--I-DLDDCEEVSRQISAVLDVED 68 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEEC-CCC--C-CHHHHHHHHHHHHHHhcccc
Confidence 455668889999999999999987644333444443 334 3 35688999999999997543
No 328
>PRK08841 aspartate kinase; Validated
Probab=22.02 E-value=1.3e+02 Score=29.05 Aligned_cols=32 Identities=6% Similarity=0.228 Sum_probs=29.7
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEE
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIIT 64 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~ 64 (315)
.+...|.+.+...||+.+++..+|...|+||.
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 46778999999999999999999999999996
No 329
>PRK14634 hypothetical protein; Provisional
Probab=21.97 E-value=4.7e+02 Score=21.76 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 138 rpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
...+...+..++..+|+.+.+.++...++...-..+|.. +.|..++ -+.++.+.+.+.+.|+...
T Consensus 6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~-~~g~~v~-lddC~~vSr~is~~LD~~d 70 (155)
T PRK14634 6 LPDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRR-SSGSDVS-LDDCAGFSGPMGEALEASQ 70 (155)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEEC-CCCCccc-HHHHHHHHHHHHHHhcccc
Confidence 345666778889999999999999887644333445544 4553343 4678999999999998543
No 330
>PRK14645 hypothetical protein; Provisional
Probab=21.96 E-value=4.7e+02 Score=21.78 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 137 DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
....+-..+..++..+|+.+.+.++...++ .++- .+|.. +++..+. -+.++.+.+.+...|+...
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~-~~~~~v~-lddC~~vSr~is~~LD~~d 72 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDR-KDEQPVT-VEDLERASRALEAELDRLD 72 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEEC-CCCCCcC-HHHHHHHHHHHHHHhcccc
Confidence 344577778899999999999999987764 4444 44443 3333343 4688999999999997543
No 331
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=21.56 E-value=2.1e+02 Score=24.35 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=43.7
Q ss_pred CeEEEEEEecC-CccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc---CCCCCCCChhHHHHHHHHHCCC
Q 021245 34 ECTVVKVDSVN-KPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID---QQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 34 ~~~~v~V~~~D-rpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~---~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
....+.+.+.| .|||-..|-..+.+. +-.+.++|.|..++....... +-|..+..+++.+.++++..++
T Consensus 74 ~~~lv~~DsNNm~~~lr~~i~~~~~~~---~d~~ev~TTDtH~~~~~~~g~~y~~vG~~~~~~~i~~~~~~~~~~A 146 (179)
T PF09843_consen 74 RSALVLADSNNMEPGLREKIREALGDV---VDEVEVMTTDTHFVNGESGGNGYWPVGPLIPPREIIESRREAVSEA 146 (179)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHhhh---cceeEEecCcccEEccEECCccceeccccCCHHHHHHHHHHHHHHH
Confidence 34445555554 688889999999888 667789987766655444333 3354444555666666665543
No 332
>PRK14646 hypothetical protein; Provisional
Probab=20.77 E-value=5e+02 Score=21.61 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245 140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (315)
Q Consensus 140 gLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 204 (315)
-+...+..++...|+.+.+......++...-..+|.. ++|..++ -+..+.+.+.+.+.|+...
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk-~~g~gVt-ldDC~~vSr~is~~LD~~D 70 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKK-TNGDDIS-LDDCALFNTPASEEIENSN 70 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEEC-CCCCCcc-HHHHHHHHHHHHHHhCcCC
Confidence 4666788899999999999999987654433445544 3333333 4678999999999998543
No 333
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=20.57 E-value=3.6e+02 Score=19.86 Aligned_cols=51 Identities=8% Similarity=-0.142 Sum_probs=35.1
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcC
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAV 183 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~ 183 (315)
.....+.+...| +..+...|..+|+++....... ++.. ..|++.| ++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~-~~~~-~~~~~~D-PdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDI-PGVG-RFAVFAD-PEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCccc-CCcE-EEEEEEC-CCCCEE
Confidence 355667777888 6677777888999988654322 2222 4799999 888654
No 334
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=20.53 E-value=4.7e+02 Score=28.76 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=40.1
Q ss_pred EeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCC
Q 021245 134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCR 181 (315)
Q Consensus 134 ~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~ 181 (315)
..+-..|+|+.++.++..+|+.+..+.+.+. +|-..-+|||+. ..+.
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~-~~~~ 286 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRG-LTAD 286 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEec-CCCC
Confidence 4577889999999999999999999999987 466778999998 5443
Done!