Query 021245
Match_columns 315
No_of_seqs 224 out of 1733
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 99.8 6.7E-18 2.3E-22 146.3 16.7 157 34-200 4-163 (195)
2 2nyi_A Unknown protein; protei 99.8 3E-18 1E-22 148.5 12.7 137 127-315 4-142 (195)
3 1u8s_A Glycine cleavage system 99.7 5.3E-17 1.8E-21 140.2 13.3 136 127-315 5-144 (192)
4 1u8s_A Glycine cleavage system 99.7 3.1E-16 1E-20 135.4 14.2 155 34-201 5-167 (192)
5 3p96_A Phosphoserine phosphata 98.9 5.5E-08 1.9E-12 92.9 19.1 138 34-176 11-150 (415)
6 3p96_A Phosphoserine phosphata 98.6 9.8E-07 3.4E-11 84.1 15.5 126 127-303 11-137 (415)
7 2f06_A Conserved hypothetical 98.6 1.8E-06 6.2E-11 70.2 14.9 110 36-172 7-116 (144)
8 1zpv_A ACT domain protein; str 98.3 7.7E-06 2.6E-10 60.9 10.1 65 127-198 4-68 (91)
9 1zpv_A ACT domain protein; str 98.2 1.3E-05 4.5E-10 59.6 10.7 49 34-82 4-52 (91)
10 2f06_A Conserved hypothetical 98.2 4.1E-05 1.4E-09 62.1 13.8 101 128-302 6-106 (144)
11 2ko1_A CTR148A, GTP pyrophosph 98.0 5.2E-05 1.8E-09 55.7 9.4 49 128-176 5-53 (88)
12 2ko1_A CTR148A, GTP pyrophosph 97.8 0.0002 7E-09 52.4 9.8 65 35-105 5-69 (88)
13 3obi_A Formyltetrahydrofolate 97.7 0.0012 4.1E-08 59.9 16.4 117 35-163 6-124 (288)
14 3o1l_A Formyltetrahydrofolate 97.7 0.00076 2.6E-08 61.6 14.5 49 34-82 21-71 (302)
15 3n0v_A Formyltetrahydrofolate 97.7 0.0014 4.9E-08 59.3 16.0 49 34-82 7-57 (286)
16 2re1_A Aspartokinase, alpha an 97.7 0.001 3.5E-08 55.3 13.9 108 34-158 24-136 (167)
17 3nrb_A Formyltetrahydrofolate 97.6 0.0019 6.6E-08 58.5 15.9 116 34-163 6-123 (287)
18 2re1_A Aspartokinase, alpha an 97.6 0.0005 1.7E-08 57.2 10.7 110 126-299 23-137 (167)
19 3lou_A Formyltetrahydrofolate 97.6 0.0015 5.1E-08 59.4 14.6 48 34-81 9-58 (292)
20 2dtj_A Aspartokinase; protein- 97.5 0.00084 2.9E-08 56.4 11.1 110 126-299 13-129 (178)
21 2dtj_A Aspartokinase; protein- 97.4 0.006 2.1E-07 51.1 15.2 109 33-158 13-128 (178)
22 3o1l_A Formyltetrahydrofolate 97.4 0.00075 2.6E-08 61.6 9.9 65 127-197 21-87 (302)
23 3obi_A Formyltetrahydrofolate 97.4 0.00094 3.2E-08 60.6 10.3 66 127-198 5-72 (288)
24 2dt9_A Aspartokinase; protein- 97.3 0.0018 6.3E-08 53.7 11.0 107 33-157 14-127 (167)
25 3lou_A Formyltetrahydrofolate 97.2 0.00098 3.4E-08 60.6 9.0 50 127-176 9-60 (292)
26 3n0v_A Formyltetrahydrofolate 97.2 0.0013 4.4E-08 59.6 9.7 65 127-198 7-73 (286)
27 3l76_A Aspartokinase; alloster 97.1 0.056 1.9E-06 53.8 21.2 191 34-300 354-562 (600)
28 2f1f_A Acetolactate synthase i 97.1 0.0016 5.6E-08 54.0 8.4 63 129-199 4-68 (164)
29 3nrb_A Formyltetrahydrofolate 97.1 0.0022 7.4E-08 58.2 9.7 48 127-174 6-55 (287)
30 2dt9_A Aspartokinase; protein- 97.0 0.0029 9.8E-08 52.5 9.3 110 125-299 13-129 (167)
31 2pc6_A Probable acetolactate s 96.9 0.0029 9.8E-08 52.6 8.2 64 128-199 4-69 (165)
32 3s1t_A Aspartokinase; ACT doma 96.8 0.019 6.3E-07 48.3 12.2 110 34-160 15-131 (181)
33 2fgc_A Acetolactate synthase, 96.7 0.078 2.7E-06 44.9 15.2 106 35-159 29-143 (193)
34 2f1f_A Acetolactate synthase i 96.6 0.0082 2.8E-07 49.7 8.4 111 36-159 4-116 (164)
35 3l76_A Aspartokinase; alloster 96.6 0.039 1.3E-06 54.9 14.8 203 34-301 269-478 (600)
36 2pc6_A Probable acetolactate s 96.4 0.011 3.7E-07 49.0 7.9 106 36-159 5-117 (165)
37 2fgc_A Acetolactate synthase, 96.4 0.016 5.5E-07 49.1 9.0 64 128-199 29-94 (193)
38 2jhe_A Transcription regulator 96.3 0.02 6.8E-07 47.1 9.3 35 130-164 2-36 (190)
39 4go7_X Aspartokinase; transfer 96.2 0.016 5.4E-07 49.6 8.3 110 33-159 33-149 (200)
40 1y7p_A Hypothetical protein AF 96.1 0.011 3.8E-07 51.0 6.8 50 127-176 3-57 (223)
41 3s1t_A Aspartokinase; ACT doma 96.1 0.03 1E-06 47.0 9.4 110 127-300 15-131 (181)
42 3ab4_A Aspartokinase; aspartat 96.0 0.2 6.9E-06 47.5 15.9 107 34-157 263-376 (421)
43 1y7p_A Hypothetical protein AF 96.0 0.014 4.9E-07 50.3 6.8 48 35-82 4-56 (223)
44 3ab4_A Aspartokinase; aspartat 95.5 0.16 5.6E-06 48.1 13.1 109 127-299 263-378 (421)
45 3c1m_A Probable aspartokinase; 95.3 0.22 7.5E-06 48.0 13.1 122 34-176 317-453 (473)
46 4go7_X Aspartokinase; transfer 95.0 0.07 2.4E-06 45.5 7.9 112 125-300 32-150 (200)
47 2jhe_A Transcription regulator 94.9 0.052 1.8E-06 44.5 6.6 37 37-74 2-38 (190)
48 3tvi_A Aspartokinase; structur 93.5 0.4 1.4E-05 45.8 10.4 120 34-176 297-423 (446)
49 1sc6_A PGDH, D-3-phosphoglycer 93.1 0.25 8.5E-06 46.7 8.1 50 127-176 330-379 (404)
50 3c1m_A Probable aspartokinase; 92.7 0.53 1.8E-05 45.3 10.0 114 126-299 316-438 (473)
51 1ygy_A PGDH, D-3-phosphoglycer 92.2 0.56 1.9E-05 45.8 9.6 52 125-176 451-504 (529)
52 2cdq_A Aspartokinase; aspartat 91.3 6.6 0.00023 38.0 15.9 122 34-176 340-468 (510)
53 1sc6_A PGDH, D-3-phosphoglycer 90.3 0.92 3.2E-05 42.7 8.6 49 34-82 330-378 (404)
54 3k5p_A D-3-phosphoglycerate de 89.9 0.49 1.7E-05 44.8 6.4 50 33-85 341-390 (416)
55 3mah_A Aspartokinase; aspartat 89.4 1.1 3.8E-05 36.2 7.4 112 34-176 17-135 (157)
56 3k5p_A D-3-phosphoglycerate de 88.3 1.5 5E-05 41.5 8.3 50 126-175 341-390 (416)
57 3tvi_A Aspartokinase; structur 88.2 1.2 4.2E-05 42.4 7.9 107 127-300 297-409 (446)
58 1ygy_A PGDH, D-3-phosphoglycer 87.7 1.7 5.9E-05 42.3 8.7 62 34-100 453-516 (529)
59 2qmx_A Prephenate dehydratase; 86.9 1.9 6.4E-05 38.6 7.8 50 127-176 199-249 (283)
60 3luy_A Probable chorismate mut 86.3 5.5 0.00019 36.3 10.7 52 129-182 207-261 (329)
61 3mwb_A Prephenate dehydratase; 85.2 2.4 8.2E-05 38.5 7.7 50 127-176 200-251 (313)
62 3luy_A Probable chorismate mut 83.8 9.1 0.00031 34.9 11.0 63 35-99 206-271 (329)
63 2qmx_A Prephenate dehydratase; 81.7 3.3 0.00011 37.0 7.0 63 34-98 199-262 (283)
64 2qmw_A PDT, prephenate dehydra 80.5 8.6 0.00029 34.0 9.2 50 127-176 185-238 (267)
65 3mwb_A Prephenate dehydratase; 79.3 3.8 0.00013 37.2 6.6 61 34-96 200-262 (313)
66 2cdq_A Aspartokinase; aspartat 76.7 5.1 0.00018 38.8 7.1 110 127-300 340-454 (510)
67 3mtj_A Homoserine dehydrogenas 75.6 2.8 9.7E-05 39.9 4.9 51 126-176 357-409 (444)
68 2qmw_A PDT, prephenate dehydra 73.5 8.8 0.0003 33.9 7.2 51 34-84 185-239 (267)
69 3mtj_A Homoserine dehydrogenas 66.6 2.7 9.2E-05 40.1 2.5 31 270-300 361-391 (444)
70 1phz_A Protein (phenylalanine 55.2 21 0.00071 33.7 6.3 51 126-176 32-83 (429)
71 2j0w_A Lysine-sensitive aspart 52.9 22 0.00074 33.7 6.2 120 34-176 307-433 (449)
72 3g12_A Putative lactoylglutath 47.6 64 0.0022 23.9 7.2 49 34-89 66-115 (128)
73 1phz_A Protein (phenylalanine 44.4 15 0.00052 34.6 3.5 36 33-70 32-67 (429)
74 1tdj_A Biosynthetic threonine 40.2 57 0.002 31.5 7.0 135 35-176 338-483 (514)
75 3mah_A Aspartokinase; aspartat 36.7 23 0.0008 28.0 3.1 33 126-158 16-51 (157)
76 1zhv_A Hypothetical protein AT 29.9 25 0.00086 27.5 2.1 33 266-298 60-95 (134)
77 1zhv_A Hypothetical protein AT 29.6 57 0.002 25.4 4.2 37 34-72 61-100 (134)
78 2j0w_A Lysine-sensitive aspart 29.5 82 0.0028 29.7 6.0 46 127-176 307-355 (449)
79 3g12_A Putative lactoylglutath 28.8 1.7E+02 0.0058 21.4 7.4 49 127-183 66-115 (128)
80 1zvp_A Hypothetical protein VC 28.1 39 0.0013 26.4 2.9 34 266-299 69-105 (133)
81 2qsw_A Methionine import ATP-b 25.6 1.2E+02 0.004 21.9 5.1 36 278-314 36-71 (100)
82 3r6a_A Uncharacterized protein 25.5 1.8E+02 0.006 22.0 6.5 47 36-89 67-113 (144)
83 3dhx_A Methionine import ATP-b 25.1 99 0.0034 22.7 4.7 36 277-314 34-69 (106)
84 2qrr_A Methionine import ATP-b 24.7 1.2E+02 0.0041 21.8 5.0 35 279-314 37-71 (101)
85 1zvp_A Hypothetical protein VC 24.0 1.5E+02 0.0052 22.9 5.7 39 32-72 68-109 (133)
86 1rwu_A Hypothetical UPF0250 pr 21.1 2.6E+02 0.0089 20.8 8.4 66 32-104 33-101 (109)
87 1rwu_A Hypothetical UPF0250 pr 21.0 2.6E+02 0.009 20.8 8.1 63 126-196 34-99 (109)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.78 E-value=6.7e-18 Score=146.34 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=114.0
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC-Cc
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA-GA 112 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~-~~ 112 (315)
...+|+|+|+|||||++.|+++|+++|+||++|++++..|.+.-.|.+..+. . ..+...+.|++.|........ .+
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~ 80 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS 80 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence 4578999999999999999999999999999999998666555477776432 1 222356788888876542110 01
Q ss_pred ccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHH
Q 021245 113 KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLS 190 (315)
Q Consensus 113 ~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~ 190 (315)
..... . . ......+.|+|.|+||||++++|+++|+++|+||.+++.+|.+ .+..+.|++.. ..+.+ +... +
T Consensus 81 ~~~~~-~-~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~-~ 153 (195)
T 2nyi_A 81 SVAER-H-V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY-Q 153 (195)
T ss_dssp CC------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH-H
T ss_pred EEEeC-C-c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc-H
Confidence 11010 0 1 3344678999999999999999999999999999999999976 55667888776 33323 2335 7
Q ss_pred HHHHHHHHHH
Q 021245 191 LMEEQLKNIL 200 (315)
Q Consensus 191 ~l~~~L~~~L 200 (315)
.|++.|....
T Consensus 154 ~l~~~l~~~a 163 (195)
T 2nyi_A 154 EVVTALSRVE 163 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888886544
No 2
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.77 E-value=3e-18 Score=148.50 Aligned_cols=137 Identities=13% Similarity=0.106 Sum_probs=104.1
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE 206 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 206 (315)
..++|+|+|+|||||++.|+++|+++|+||.+|++++..+.....|.|.. +.. ....+++.|++.|...+.+..
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~~~---~~~~~~~~l~~~L~~~~~~~~-- 77 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-NAK---DGKLIQSALESALPGFQISTR-- 77 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SSS---SSHHHHHHHHHHSTTCEEEEE--
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-cCc---cchhHHHHHHHHHHHHHHhcC--
Confidence 45799999999999999999999999999999999998877666888876 321 223356666666643322100
Q ss_pred ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHH
Q 021245 207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIV 286 (315)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~ 286 (315)
..-++ +. ++ . ..+...++|+|.|+|||||+++|+
T Consensus 78 ----------------~~~~~----------------------~~---~~----~-~~~~~~~iltv~g~DrpGiva~Vt 111 (195)
T 2nyi_A 78 ----------------RASSV----------------------AE---RH----V-SPDTREYELYVEGPDSEGIVEAVT 111 (195)
T ss_dssp ----------------ECCCC---------------------------------C-CTTEEEEEEEEEEECCTTHHHHHH
T ss_pred ----------------CeEEE----------------------Ee---CC----c-CCCCcEEEEEEEeCCCcCHHHHHH
Confidence 00001 00 11 1 234567899999999999999999
Q ss_pred hhhcCCceEEEEEEEEecC--CeeEEEEeeC
Q 021245 287 CTLTDMQYVVFHAAISSDG--PHASQVRVLE 315 (315)
Q Consensus 287 ~~l~~~~i~I~~AkI~T~g--~~a~D~F~v~ 315 (315)
.+|+++|+||..+++.|.+ ++++|.||++
T Consensus 112 ~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~ 142 (195)
T 2nyi_A 112 AVLAKKGANIVELETETLPAPFAGFTLFRMG 142 (195)
T ss_dssp HHHHHTTCEEEEEEEEEEECSSTTCEEEEEE
T ss_pred HHHHHcCCCEEEceeeecccccCCCCeEEEE
Confidence 9999999999999999999 8899999984
No 3
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.72 E-value=5.3e-17 Score=140.16 Aligned_cols=136 Identities=13% Similarity=0.182 Sum_probs=103.1
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE 206 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 206 (315)
..++|+|+|+||||++++|+++|+++|+||.++++++.++.....+.|.. + ...++.|++.|.+.+. +..
T Consensus 5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~~~~-~~~- 74 (192)
T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPLLGQ-QHD- 74 (192)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHHHHH-HHT-
T ss_pred cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec-C-------CCCHHHHHHHHHHHHH-hcC-
Confidence 35789999999999999999999999999999999998887777888876 2 1366788888876552 211
Q ss_pred ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHH
Q 021245 207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIV 286 (315)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~ 286 (315)
..-++.. . . + ++ +..+...++++|.|+||||+|++|+
T Consensus 75 ----------------~~~~~~~-----~--~-----------~----~~-----~~~~~~~~~l~v~~~D~~Gil~~v~ 111 (192)
T 1u8s_A 75 ----------------LITMMKR-----T--S-----------P----HD-----HQTHAYTVEVYVESDDKLGLTEKFT 111 (192)
T ss_dssp ----------------CEEEEEE-----E--C-----------C----CC-----CCCCSEEEEEEEEESCCTTHHHHHH
T ss_pred ----------------CEEEEEe-----C--C-----------C----CC-----CccCCceEEEEEEeCCCccHHHHHH
Confidence 0000100 0 0 0 01 2344567899999999999999999
Q ss_pred hhhcCCceEEEEEEEEecCC----eeEEEEeeC
Q 021245 287 CTLTDMQYVVFHAAISSDGP----HASQVRVLE 315 (315)
Q Consensus 287 ~~l~~~~i~I~~AkI~T~g~----~a~D~F~v~ 315 (315)
++|+++|++|..++..|.++ +++|.||++
T Consensus 112 ~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~ 144 (192)
T 1u8s_A 112 QFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA 144 (192)
T ss_dssp HHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred HHHHHcCCcHHHhhhhcccCCccCCCCCEEEEE
Confidence 99999999999999999995 799999974
No 4
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.69 E-value=3.1e-16 Score=135.36 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=106.7
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC---CCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG---HITA 110 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~---~~~~ 110 (315)
....|+|+|+||||++++++++|+++|+||.++++++.+|.+.-.+.+..+. ...+.|++.|.... ....
T Consensus 5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~ 77 (192)
T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT 77 (192)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence 3578999999999999999999999999999999998777776677776431 23445555543211 1000
Q ss_pred Ccc-cCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC----eEEEEEEEEeCCCCCcCCC
Q 021245 111 GAK-TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR----RIACVLYVNDDTTCRAVGD 185 (315)
Q Consensus 111 ~~~-~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~----~~~d~F~V~~~~~g~~~~~ 185 (315)
..+ ...+ .+......+.|+|.|+||||++++|+++|+++|+||.+++..|.+. +..+.|++.. ..+.+ +
T Consensus 78 ~~~~~~~~---~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~-~~~~~--~ 151 (192)
T 1u8s_A 78 MMKRTSPH---DHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI-SARVD--S 151 (192)
T ss_dssp EEEEECCC---CCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE-EEEEC--T
T ss_pred EEEeCCCC---CCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE-EEeCC--C
Confidence 000 0000 0133446789999999999999999999999999999999999863 4667777766 32222 1
Q ss_pred hHHHHHHHHHHHHHHc
Q 021245 186 QTRLSLMEEQLKNILR 201 (315)
Q Consensus 186 ~~~~~~l~~~L~~~L~ 201 (315)
....+.|++.|.+...
T Consensus 152 ~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 152 GCNLMQLQEEFDALCT 167 (192)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 2245778888865443
No 5
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.93 E-value=5.5e-08 Score=92.90 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=91.6
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 113 (315)
....|+|.|+||||+.+.+++.|+++|+||.+.+.+..+|++.-...+.-+.+. .+.+.+.+.++.. ...+...-..+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~~~~l~~~l~~~-~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-ADGPALRHDVEAA-IRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HTSHHHHHHHHHH-HHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CCHHHHHHHHHHH-HHHcCeEEEEE
Confidence 457899999999999999999999999999999999988887655555422111 1112333333322 11111100000
Q ss_pred -cCCceeeeecCCCceEEEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 114 -TWPSKQVGVHSVGDHTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 114 -~~~~~~v~~~~~~~~t~i~i~~~D-rpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
..... ......+..+++.+++ ++|++.+|+.+|+++|+||.+.+..+......-.|.+..
T Consensus 89 ~~~~~~---~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~ 150 (415)
T 3p96_A 89 RSDDVP---IIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV 150 (415)
T ss_dssp ECSSSC---SSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred ECCccc---ccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence 00000 0123467889999999 999999999999999999998887774333333466655
No 6
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.58 E-value=9.8e-07 Score=84.13 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=87.7
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE 206 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 206 (315)
...+|+|.|+||||+.+.|+++|+++|+||.+.+-++.++.......+.- +.. . ...+.|++.|.. +..+..
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~-~~~-~----~~~~~l~~~l~~-~~~~~~- 82 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCC-PAD-V----ADGPALRHDVEA-AIRKVG- 82 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEE-CHH-H----HTSHHHHHHHHH-HHHHTT-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEe-cCC-c----CCHHHHHHHHHH-HHHHcC-
Confidence 46789999999999999999999999999999999888887666666654 211 0 022567777744 333222
Q ss_pred ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC-CCchHHHH
Q 021245 207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD-RAKLMFDI 285 (315)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D-RpGLL~~I 285 (315)
.+-+++. .. .. .+. ......++++.++| +||++.+|
T Consensus 83 ----------------~~~~~~~-----~~-------------~~--~~~-------~~~~~~~~~llg~~~~~~~~~~i 119 (415)
T 3p96_A 83 ----------------LDVSIER-----SD-------------DV--PII-------REPSTHTIFVLGRPITAAAFGAV 119 (415)
T ss_dssp ----------------CEEEEEE-----CS-------------SS--CSS-------CCCCSEEEEEEESSCCHHHHHHH
T ss_pred ----------------eEEEEEE-----CC-------------cc--ccc-------CCCCcEEEEEEeCCCCHHHHHHH
Confidence 0000100 00 00 000 12345677799999 99999999
Q ss_pred HhhhcCCceEEEEEEEEe
Q 021245 286 VCTLTDMQYVVFHAAISS 303 (315)
Q Consensus 286 ~~~l~~~~i~I~~AkI~T 303 (315)
+..|++.|+||...+.-+
T Consensus 120 ~~~l~~~~~Ni~~l~~~~ 137 (415)
T 3p96_A 120 AREVAALGVNIDLIRGVS 137 (415)
T ss_dssp HHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHcCCCccceeecc
Confidence 999999999998887766
No 7
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.58 E-value=1.8e-06 Score=70.22 Aligned_cols=110 Identities=19% Similarity=0.177 Sum_probs=72.7
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTW 115 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 115 (315)
..|+|..+|+||.++++++.|++.|+||..-.+....+.-+-.|.+. +. ++.++.|.... +
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~G-----~--- 67 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDNH-----F--- 67 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHTT-----C---
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHcC-----C---
Confidence 57889999999999999999999999999777653222111123321 11 22233333211 0
Q ss_pred CceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 021245 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVL 172 (315)
Q Consensus 116 ~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F 172 (315)
... ....+.+..+|+||.+++++++|+++|+||.....+..++...-.|
T Consensus 68 -~v~-------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 68 -AVN-------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp -CEE-------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred -eEe-------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 000 1246777899999999999999999999998766653344444444
No 8
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.25 E-value=7.7e-06 Score=60.89 Aligned_cols=65 Identities=14% Similarity=0.339 Sum_probs=51.3
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
....|.|.++||||++++|+++|+++|+||.+....+.++.....+.+.- ++ . ..++.|.+.|.+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~~--~----~~l~~l~~~L~~ 68 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-DE--K----QDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SS--C----CCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-CC--C----CCHHHHHHHHHH
Confidence 45789999999999999999999999999999999887777666676654 22 1 234667777754
No 9
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.22 E-value=1.3e-05 Score=59.60 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=43.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~ 82 (315)
....|+|.++||||++++++++|++.|+||.+.+..+.+|.+.-.+.+.
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~ 52 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 52 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEE
Confidence 4568999999999999999999999999999999988778777666664
No 10
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.18 E-value=4.1e-05 Score=62.09 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=68.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCCc
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED 207 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 207 (315)
...++|..+|+||.++++++.|+++|+||..-.+....+...-.|.+. ++ ++.++.|.+. +. .
T Consensus 6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~---~~a~~~L~~~--G~-~-- 68 (144)
T 2f06_A 6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DP---DKAYKALKDN--HF-A-- 68 (144)
T ss_dssp EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CH---HHHHHHHHHT--TC-C--
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CH---HHHHHHHHHc--CC-e--
Confidence 357888999999999999999999999999876654332211223221 12 2233333220 10 0
Q ss_pred cccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHHh
Q 021245 208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC 287 (315)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~~ 287 (315)
+. .++++-+.-+|+||.++++++
T Consensus 69 --------------------------------------------------v~-------~~svv~v~~~d~pGvla~i~~ 91 (144)
T 2f06_A 69 --------------------------------------------------VN-------ITDVVGISCPNVPGALAKVLG 91 (144)
T ss_dssp --------------------------------------------------EE-------EEEEEEEEEESSTTHHHHHHH
T ss_pred --------------------------------------------------Ee-------eeeEEEEEeCCCCcHHHHHHH
Confidence 00 124676788999999999999
Q ss_pred hhcCCceEEEEEEEE
Q 021245 288 TLTDMQYVVFHAAIS 302 (315)
Q Consensus 288 ~l~~~~i~I~~AkI~ 302 (315)
+|++.|++|.+....
T Consensus 92 ~L~~~~InI~~~~~~ 106 (144)
T 2f06_A 92 FLSAEGVFIEYMYSF 106 (144)
T ss_dssp HHHHTTCCEEEEEEE
T ss_pred HHHHCCCCEEEEEEE
Confidence 999999999765543
No 11
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.96 E-value=5.2e-05 Score=55.68 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=40.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
.+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+..
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 4678899999999999999999999999999999876564555555544
No 12
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.77 E-value=0.0002 Score=52.41 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=48.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (315)
.+.|.|.++|+||++++|+++|++.|+||.+..+.+.++.+...|.+.-. +....+.+.+.|...
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK------NTDKLTTLMDKLRKV 69 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES------SHHHHHHHHHHHTTC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC------CHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999988755555444444321 223456677777653
No 13
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.74 E-value=0.0012 Score=59.88 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=68.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA 112 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 112 (315)
...|+|.|+||||+.+.+++.|+++|+||.+.+.++ .+|++.-...+.-+.+ ..+ .+.|++.|.....
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~----~~~L~~~f~~la~----- 75 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIP----LASLRTGFGVIAA----- 75 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCC----HHHHHHHHHHHHH-----
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCC----HHHHHHHHHHHHH-----
Confidence 468999999999999999999999999999999985 4677765555543322 122 2344444322110
Q ss_pred ccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 113 KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (315)
Q Consensus 113 ~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t 163 (315)
......++..... ...|-|..--+---|.+|......-.+++.=+-+.+
T Consensus 76 ~~~m~~~l~~~~~--~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis 124 (288)
T 3obi_A 76 KFTMGWHMRDRET--RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 124 (288)
T ss_dssp HTTCEEEEEETTS--CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred HcCCEEEeeccCC--CcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence 0111222332222 233434333344466777777766666544344444
No 14
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.70 E-value=0.00076 Score=61.58 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=42.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~ 82 (315)
....|+|.|+||||+.+.+++.|+++|+||.+++.+++ +|+|.-...+.
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~ 71 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR 71 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence 45689999999999999999999999999999999974 68776555554
No 15
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.68 E-value=0.0014 Score=59.30 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=41.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~ 82 (315)
....|+|.|+||||+.+.+++.|+++|+||.+.+.++ .+|++.-...+.
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~ 57 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR 57 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe
Confidence 3468999999999999999999999999999999996 467776444443
No 16
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.68 E-value=0.001 Score=55.29 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=73.2
Q ss_pred CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245 34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (315)
Q Consensus 34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 111 (315)
+...|+|. .+|+||.++++...|++.|+||....... .+|...-.|.|...+. ++..+.|++ +...+..
T Consensus 24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~--- 94 (167)
T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA--- 94 (167)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC---
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC---
Confidence 67788888 49999999999999999999998555432 3454445677753111 122333333 2222211
Q ss_pred cccCCceeeeecCCCceEEEEEEeCC---cccHHHHHHHHHHhCCceEEE
Q 021245 112 AKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 112 ~~~~~~~~v~~~~~~~~t~i~i~~~D---rpgLl~~i~~~l~~~~l~I~~ 158 (315)
.. +. ...+...+.|.+.+ +||+++++..+|+++|+||..
T Consensus 95 ----~~--i~--~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ 136 (167)
T 2re1_A 95 ----AS--ID--GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM 136 (167)
T ss_dssp ----SE--EE--EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred ----ce--EE--ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence 01 11 12467889999887 999999999999999999987
No 17
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.62 E-value=0.0019 Score=58.49 Aligned_cols=116 Identities=15% Similarity=0.008 Sum_probs=68.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 111 (315)
....|+|.|+||||+.+.+++.|+++|+||.+.+.++ .+|+|.-...+..+ +. ..+.+.+.++.. ...+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~--~~~~L~~~f~~l-a~~~----- 76 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP-VA--GVNDFNSAFGKV-VEKY----- 76 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-C-----CHHHHHHHHH-HGGG-----
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC-CC--CHHHHHHHHHHH-HHHc-----
Confidence 4578999999999999999999999999999999985 46777644444322 21 112334444322 1211
Q ss_pred cccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 112 AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (315)
Q Consensus 112 ~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t 163 (315)
.....+.....+....|.+.+.. --|.+|......-.+++.=+-+.+
T Consensus 77 ---~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g~l~~~i~~Vis 123 (287)
T 3nrb_A 77 ---NAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLGELDMEVVGIIS 123 (287)
T ss_dssp ---TCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred ---CCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCCCCCeEEEEEEe
Confidence 12223333222334444444443 456666666666555543334444
No 18
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.59 E-value=0.0005 Score=57.17 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=73.7
Q ss_pred CceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245 126 GDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (315)
Q Consensus 126 ~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 203 (315)
.+.+.|+|. .+|+||.+++|.+.|+++|+||..-..... +|...-.|.|.. . +. ++..+.|.+ +..+
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~-~------~~---~~a~~~l~~-~~~~ 91 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR-G------DY---KQTLEILSE-RQDS 91 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG-G------GH---HHHHHHHHH-SSTT
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec-h------HH---HHHHHHHHH-HHHH
Confidence 466788888 499999999999999999999976543322 233334566643 1 11 223333432 2111
Q ss_pred CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC---CCc
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD---RAK 280 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D---RpG 280 (315)
.. . ..|.+. .+.+++.|.+.+ +||
T Consensus 92 l~------------------------------------------------~-~~i~~~----~~~a~vsvvG~~m~~~~G 118 (167)
T 2re1_A 92 IG------------------------------------------------A-ASIDGD----DTVCKVSAVGLGMRSHVG 118 (167)
T ss_dssp TT------------------------------------------------C-SEEEEE----SSEEEEEEECSSCTTCCC
T ss_pred cC------------------------------------------------C-ceEEec----CCEEEEEEECCCcCCCcC
Confidence 11 0 234443 468899999987 999
Q ss_pred hHHHHHhhhcCCceEEEEE
Q 021245 281 LMFDIVCTLTDMQYVVFHA 299 (315)
Q Consensus 281 LL~~I~~~l~~~~i~I~~A 299 (315)
.++++..+|.+.|++|.+-
T Consensus 119 v~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 119 VAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp HHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 9999999999999999883
No 19
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.59 E-value=0.0015 Score=59.35 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=41.0
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV 81 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v 81 (315)
....|++.|+||||+.+.+++.|+++|+||.+.+.++ .+|+|.-...+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~ 58 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF 58 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence 4578999999999999999999999999999999996 46777644444
No 20
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=97.51 E-value=0.00084 Score=56.43 Aligned_cols=110 Identities=12% Similarity=0.135 Sum_probs=73.2
Q ss_pred CceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245 126 GDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (315)
Q Consensus 126 ~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 201 (315)
.+.+.|+|. .+|+||.+++|.+.|+++|+||.-....+. ++...-.|.+.. +..++..+.|.+ +.
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~~ 81 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-LQ 81 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-TT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-HH
Confidence 466777774 689999999999999999999886544433 123333455543 122333333322 11
Q ss_pred CCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CC
Q 021245 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR 278 (315)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DR 278 (315)
.... . ..|.+. .+.+++.|.+. ++
T Consensus 82 ~~~~------------------------------------------------~-~~v~~~----~~~a~VsvVG~gm~~~ 108 (178)
T 2dtj_A 82 VQGN------------------------------------------------W-TNVLYD----DQVGKVSLVGAGMKSH 108 (178)
T ss_dssp TTTT------------------------------------------------C-SEEEEE----SCEEEEEEEEECCTTC
T ss_pred HhcC------------------------------------------------C-CeEEEe----CCeEEEEEEcCCcccC
Confidence 1110 0 235544 46788999987 89
Q ss_pred CchHHHHHhhhcCCceEEEEE
Q 021245 279 AKLMFDIVCTLTDMQYVVFHA 299 (315)
Q Consensus 279 pGLL~~I~~~l~~~~i~I~~A 299 (315)
||.++++.++|++.||+|.+-
T Consensus 109 ~Gv~arif~aLa~~~InI~~i 129 (178)
T 2dtj_A 109 PGVTAEFMEALRDVNVNIELI 129 (178)
T ss_dssp HHHHHHHHHHHHHTTCCCCEE
T ss_pred ccHHHHHHHHHHHCCCCEEEE
Confidence 999999999999999999884
No 21
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=97.41 E-value=0.006 Score=51.12 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=71.5
Q ss_pred CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC
Q 021245 33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI 108 (315)
Q Consensus 33 ~~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~ 108 (315)
.+.+.|+|. .+|+||.++++...|++.|+||.-....+. +|..--.|.+... -..+.++.|......
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~ 83 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ 83 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence 367888884 699999999999999999999985554432 3333334666531 112223334331110
Q ss_pred CCCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245 109 TAGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 109 ~~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
.... .+.. ..+...|.|.|. ++||+++++.++|++.|+||..
T Consensus 84 -----~~~~-~v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ 128 (178)
T 2dtj_A 84 -----GNWT-NVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL 128 (178)
T ss_dssp -----TTCS-EEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred -----cCCC-eEEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence 0011 1221 236677788776 8999999999999999999987
No 22
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.38 E-value=0.00075 Score=61.58 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=47.7
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 197 (315)
....+++.|+||||+.+.|+++|+++|+||.++.-++. .+.......+.. +.+ .. ..+.|+++|.
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~-~~~-~~----~~~~L~~~l~ 87 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA-DTL-PF----DLDGFREAFT 87 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG-GGS-SS----CHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec-CCC-CC----CHHHHHHHHH
Confidence 45789999999999999999999999999999998875 355555444443 211 11 2356666664
No 23
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.37 E-value=0.00094 Score=60.58 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=48.2
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
..+.+++.|+||||+.+.|+++|+++|+||.+.+-++. .+.......+.- +.+ .. ..+.|++.|..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~-~~----~~~~L~~~f~~ 72 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA-AAK-VI----PLASLRTGFGV 72 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE-SSC-CC----CHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc-CCC-CC----CHHHHHHHHHH
Confidence 44789999999999999999999999999999998753 355555554544 222 11 23567777743
No 24
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=97.34 E-value=0.0018 Score=53.65 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=71.3
Q ss_pred CCeEEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC
Q 021245 33 PECTVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI 108 (315)
Q Consensus 33 ~~~~~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~ 108 (315)
++.+.|+|.+ +|+||.++++...|++.|+||.-...... .|..--.|.|...+..+. .+.+.+++..+.
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a--~~~L~~~~~~~~----- 86 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEA--LEALEPVLAEIG----- 86 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHH--HHHHHHHHHHHC-----
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHH--HHHHHHHHHHhC-----
Confidence 4778888876 89999999999999999999985433321 344445677754211100 012222222232
Q ss_pred CCCcccCCceeeeecCCCceEEEEEEeCC---cccHHHHHHHHHHhCCceEE
Q 021245 109 TAGAKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVA 157 (315)
Q Consensus 109 ~~~~~~~~~~~v~~~~~~~~t~i~i~~~D---rpgLl~~i~~~l~~~~l~I~ 157 (315)
. .+.. ..+...+.|.|.+ +||+++++.++|++.|+||.
T Consensus 87 -------~--~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~ 127 (167)
T 2dt9_A 87 -------G--EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIE 127 (167)
T ss_dssp -------C--EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCC
T ss_pred -------C--cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEE
Confidence 1 1111 2467788898876 99999999999999999994
No 25
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.25 E-value=0.00098 Score=60.55 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=40.6
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
..+++++.|+||||+.++|+++|+++|+||.+++-++. .+.......+..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 60 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHA 60 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEc
Confidence 45789999999999999999999999999999998863 355554444443
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.24 E-value=0.0013 Score=59.61 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=48.0
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 198 (315)
..++++|.|+||||+.+.|+++|+++|+||.+.+-++. .+.......+.. +. .. ..+.|+++|.+
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~--~~----~~~~L~~~f~~ 73 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ-PD--DF----DEAGFRAGLAE 73 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CS--SC----CHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec-CC--CC----CHHHHHHHHHH
Confidence 34789999999999999999999999999999998863 355544444433 22 11 24677777754
No 27
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=97.14 E-value=0.056 Score=53.82 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=118.1
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+...|.|.+. .+||..+++..+|++.|+||.-.. +.. .- ..|.|...+. ++..+.|.+.+.... .+.
T Consensus 354 ~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe-~~-Is~vI~~~d~-----~~Av~aLh~~f~~~~-t~~ 423 (600)
T 3l76_A 354 GIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSE-VK-VSCVIDQRDA-----DRAIAALSNAFGVTL-SPP 423 (600)
T ss_dssp SEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECS-SE-EEEEEEGGGH-----HHHHHHHHHHTTCCB-CCC
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCC-CE-EEEEEcHHHH-----HHHHHHHHHhhcccC-CCc
Confidence 6788999976 799999999999999999998444 332 22 2466653211 234556666654321 110
Q ss_pred Ccc-----cCCceeeeecCCCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee----CC--eEEEEEEEEeCC
Q 021245 111 GAK-----TWPSKQVGVHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH----NR--RIACVLYVNDDT 178 (315)
Q Consensus 111 ~~~-----~~~~~~v~~~~~~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~----~~--~~~d~F~V~~~~ 178 (315)
... .++-.-|. .+.+...|+|. .+|+||+.++|.+.|+++|+||.--.-... .| ...-.|.|..
T Consensus 424 ~~~~~~~~~~~v~Gia--~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~-- 499 (600)
T 3l76_A 424 KNQTDTSHLPAVRGVA--LDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE-- 499 (600)
T ss_dssp CCCCC---CCSCCEEE--EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--
T ss_pred cccccccccCceEEEE--eeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--
Confidence 000 00011122 23456677664 589999999999999999999952222211 13 2334566654
Q ss_pred CCCcCCChHHHHHHHHHHHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEE
Q 021245 179 TCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEI 258 (315)
Q Consensus 179 ~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 258 (315)
+..++..+.|.+ +..... +.+|
T Consensus 500 --------~d~~~a~~~l~~-~~~~~~-------------------------------------------------~~~v 521 (600)
T 3l76_A 500 --------GDSSQAEAILQP-LIKDWL-------------------------------------------------DAAI 521 (600)
T ss_dssp --------HHHHHHHHHHHH-HTTTST-------------------------------------------------TCEE
T ss_pred --------HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceE
Confidence 233333333422 221111 1335
Q ss_pred EEeecCCCCeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEE
Q 021245 259 TVERLEDKGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 259 ~i~~~~~~~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
.++ .+++.+.|.+ ..+||.-+++-++|++.||+|.+-.
T Consensus 522 ~~~----~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis 562 (600)
T 3l76_A 522 VVN----KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA 562 (600)
T ss_dssp EEE----CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred EEe----CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence 555 4688999986 5999999999999999999998755
No 28
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=97.13 E-value=0.0016 Score=54.04 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=50.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
..|.|.+.|+||+|++|+++|++.|+||.+..+.+.. +...-+|.+.. . ...+++|.+.|.+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~----d----~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG----D----EKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES----C----HHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec----c----HHHHHHHHHHHcCC
Confidence 5788999999999999999999999999999987543 55666777754 1 35677888888653
No 29
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.11 E-value=0.0022 Score=58.15 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=39.6
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYV 174 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V 174 (315)
..+.|++.|+||||+.+.|+++|+++|+||.++.-++. .+.......+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~ 55 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV 55 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE
Confidence 45789999999999999999999999999999998853 3555444444
No 30
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=97.05 E-value=0.0029 Score=52.46 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCceEEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 125 VGDHTAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 125 ~~~~t~i~i~~-~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+.+.|+|.+ +|+||.++++.++|+++|+||.-...... .|...-.|.|.. . +. ++..+.|.+..
T Consensus 13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~-~------d~---~~a~~~L~~~~ 82 (167)
T 2dt9_A 13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK-D------FA---QEALEALEPVL 82 (167)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG-G------GH---HHHHHHHHHHH
T ss_pred eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh-H------HH---HHHHHHHHHHH
Confidence 34667777776 89999999999999999999875332211 123444576654 1 11 22223332211
Q ss_pred cCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC---
Q 021245 201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD--- 277 (315)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D--- 277 (315)
. + + . . .|.++ .+.+++.|.+.+
T Consensus 83 ~-~-----------------------~-----------------------~--~--~v~~~----~~~a~vsvVG~gm~~ 107 (167)
T 2dt9_A 83 A-E-----------------------I-----------------------G--G--EAILR----PDIAKVSIVGVGLAS 107 (167)
T ss_dssp H-H-----------------------H-----------------------C--C--EEEEE----CSEEEEEEEESSGGG
T ss_pred H-H-----------------------h-----------------------C--C--cEEEe----CCEEEEEEECCCccc
Confidence 0 0 1 0 1 34443 467899999986
Q ss_pred CCchHHHHHhhhcCCceEEEEE
Q 021245 278 RAKLMFDIVCTLTDMQYVVFHA 299 (315)
Q Consensus 278 RpGLL~~I~~~l~~~~i~I~~A 299 (315)
+||.++++.++|.+.||+|..-
T Consensus 108 ~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 108 TPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp STHHHHHHHHHHHHTTCCCCEE
T ss_pred CcCHHHHHHHHHHHCCCCEEEE
Confidence 9999999999999999999654
No 31
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.94 E-value=0.0029 Score=52.58 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=51.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
...+.|...|+||+|++|+++|++.|+||.+..+.... +...-+|.|.. . ...+++|.+.|.+.
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-d-------~~~leql~kQL~Kl 69 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-P-------DEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-C-------HHHHHHHHHHHHHS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-c-------HHHHHHHHHHhcCC
Confidence 35788999999999999999999999999999987543 56667777765 1 35677888888654
No 32
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=96.78 E-value=0.019 Score=48.32 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=71.2
Q ss_pred CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245 34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (315)
Q Consensus 34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (315)
+.+.|+|. .+|+||.+++|...|++.|+||.--..... +|..--.|.+...+... ..+.++.++..+..
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~~----- 87 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIGF----- 87 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHCC-----
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcCc-----
Confidence 56666664 679999999999999999999974433222 56655577776422110 01122222222210
Q ss_pred CCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 021245 110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (315)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~ 160 (315)
.++.+ ..+...|.|.|. ++||+.+++.++|++.|+||....
T Consensus 88 ------~~v~~----~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 88 ------SQLLY----DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp ------SEEEE----ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ------ceEEE----eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 01122 235677777765 899999999999999999998655
No 33
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.68 E-value=0.078 Score=44.87 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=71.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-ee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA 112 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 112 (315)
...|.|...|+||.|++|+++|+..|+||.+-.+. |. .|..--++.|... +...++|++.|....+.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidV---- 97 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEV---- 97 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTE----
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCce----
Confidence 45789999999999999999999999999988886 43 3665545566422 24678888888764431
Q ss_pred ccCCceeeee-cC------CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245 113 KTWPSKQVGV-HS------VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 113 ~~~~~~~v~~-~~------~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.+|.. .. ......+.|.+... -.+|.+.....+.+|.+.
T Consensus 98 -----ikV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv 143 (193)
T 2fgc_A 98 -----VKVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDV 143 (193)
T ss_dssp -----EEEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEE
T ss_pred -----EEEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEE
Confidence 11221 11 11334556665442 677777777778777764
No 34
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.58 E-value=0.0082 Score=49.75 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=67.8
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 113 (315)
..|.|.+.|+||+|++++++|+..|+||.+..+.+ . .|...-+|.+. +. +..+++|.+.|....+.-...+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d----~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc----HHHHHHHHHHHcCCCCEEEEEE
Confidence 47889999999999999999999999999988875 4 36666556664 22 3466777777755332110000
Q ss_pred cCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245 114 TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 114 ~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
......+ ......+.|.+.. .--.++.+.....+.+|.+.
T Consensus 77 ~~~~~~v----~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv 116 (164)
T 2f1f_A 77 LGQGAHV----EREIMLVKIQASG--YGRDEVKRNTEIFRGQIIDV 116 (164)
T ss_dssp GGGSCEE----EEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEE
T ss_pred cCCcccc----eeEEEEEEEECCc--ccHHHHHHHHHHcCCEEEEE
Confidence 0000001 1133455555532 23356666666667777653
No 35
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=96.58 E-value=0.039 Score=54.95 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=114.2
Q ss_pred CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC-CC
Q 021245 34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI-TA 110 (315)
Q Consensus 34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~-~~ 110 (315)
+.+.|++. .++.||.+++|...|++.|++|.-..... .+|..--.|.|...+- +...+.+++ +...+.. ++
T Consensus 269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~ 342 (600)
T 3l76_A 269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPE 342 (600)
T ss_dssp CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTT
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhcccc
Confidence 33445554 47999999999999999999996322222 4565555677754211 111222222 2222210 00
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChH
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~ 187 (315)
......+.. ..+...|.|.+. .+||+.+++..+|+++|+||.-.. |. ...-.|.|.. +
T Consensus 343 ---~~~~~~v~~--~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~----------~ 403 (600)
T 3l76_A 343 ---ADQEAEIIV--EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQ----------R 403 (600)
T ss_dssp ---CSSSSEEEE--ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEG----------G
T ss_pred ---ccCcceeEe--cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcH----------H
Confidence 000011221 236788888876 799999999999999999996543 22 2334455554 1
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCC
Q 021245 188 RLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKG 267 (315)
Q Consensus 188 ~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~ 267 (315)
..++.-+.|++.+..... .. .+. +... ... .=+-|..+ .+
T Consensus 404 d~~~Av~aLh~~f~~~~t---~~------------~~~--------~~~~------------~~~-~v~Gia~~----~~ 443 (600)
T 3l76_A 404 DADRAIAALSNAFGVTLS---PP------------KNQ--------TDTS------------HLP-AVRGVALD----QD 443 (600)
T ss_dssp GHHHHHHHHHHHTTCCBC---CC------------CCC--------CC---------------CC-SCCEEEEE----CS
T ss_pred HHHHHHHHHHHhhcccCC---Cc------------ccc--------cccc------------ccC-ceEEEEee----CC
Confidence 223344456555543211 00 000 0000 000 11335544 34
Q ss_pred eeEEEEE-eCCCCchHHHHHhhhcCCceEEEEEEE
Q 021245 268 YSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAI 301 (315)
Q Consensus 268 ~tvieV~-a~DRpGLL~~I~~~l~~~~i~I~~AkI 301 (315)
.+.|.|. -+|+||+.++|-..|++.||+|-.-.-
T Consensus 444 ~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q 478 (600)
T 3l76_A 444 QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQ 478 (600)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence 5666664 589999999999999999999954433
No 36
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.37 E-value=0.011 Score=49.04 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=68.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 113 (315)
..|.|...|+||+|++++++|+..|+||.+..+.. . .|...-++.+. +. +...++|.+.|....+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d----~~~leql~kQL~Kl~dV----- 72 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP----DEIVEQITKQLNKLIEV----- 72 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC----HHHHHHHHHHHHHSTTE-----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc----HHHHHHHHHHhcCCCCE-----
Confidence 47889999999999999999999999999988874 3 47666566664 22 34677777777653321
Q ss_pred cCCceeeee-cC----CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245 114 TWPSKQVGV-HS----VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 114 ~~~~~~v~~-~~----~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.++.. .. ......+.|.+.. .--.++.+.....+.+|.+.
T Consensus 73 ----~~V~~~~~~~~v~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv 117 (165)
T 2pc6_A 73 ----VKLIDLSSEGYVERELMLVKVRAVG--KDREEMKRLADIFRGNIIDV 117 (165)
T ss_dssp ----EEEEEGGGSCEEEEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEE
T ss_pred ----EEEEEcCCcceeeeEEEEEEEeCCc--ccHHHHHHHHHHcCCEEEEE
Confidence 11111 10 1133455555532 23356666666777777764
No 37
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.37 E-value=0.016 Score=49.13 Aligned_cols=64 Identities=16% Similarity=0.364 Sum_probs=50.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (315)
Q Consensus 128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~-t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 199 (315)
...|.|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|.+ . +..+++|.+.|.+.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g-~-------e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-D-------DKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-C-------TTHHHHHHHHHTTS
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC-C-------HHHHHHHHHHhcCc
Confidence 46889999999999999999999999999998886 444 55666777766 2 23567788877653
No 38
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.30 E-value=0.02 Score=47.07 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (315)
Q Consensus 130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~ 164 (315)
.|.|.|.||+|++++|+.+|+.+++||..+.+.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 57899999999999999999999999999999665
No 39
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=96.21 E-value=0.016 Score=49.61 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe---eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC
Q 021245 33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI 108 (315)
Q Consensus 33 ~~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~ 108 (315)
++...|+|. .+|+||+.++|.+.|++.|+||---.... .++..-..|.+...+ ..+..+.|.....
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d---------~~~~~~~l~~~~~- 102 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------GPAAVEKLDSLRN- 102 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG---------HHHHHHHHHTTHH-
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh---------HHHHHHHHHHHHh-
Confidence 467788886 58999999999999999999998433322 234555567765321 1222222222110
Q ss_pred CCCcccCCceeeeecCCCceEEEEEE---eCCcccHHHHHHHHHHhCCceEEEE
Q 021245 109 TAGAKTWPSKQVGVHSVGDHTAIELI---GRDRPGLLSEISAVLANLRFNVAAA 159 (315)
Q Consensus 109 ~~~~~~~~~~~v~~~~~~~~t~i~i~---~~DrpgLl~~i~~~l~~~~l~I~~A 159 (315)
.... ..+.. ..+...|.|. .+.+||+.+++.++|++.|+||.--
T Consensus 103 ----~~~~-~~v~~--~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI 149 (200)
T 4go7_X 103 ----EIGF-SQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI 149 (200)
T ss_dssp ----HHCC-SEEEE--ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred ----hhce-eeEEE--ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence 0000 01111 1244455554 5689999999999999999999754
No 40
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=96.13 E-value=0.011 Score=50.95 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=36.5
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-----RRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-----~~~~d~F~V~~ 176 (315)
....|.|.+.||||+|++|+++|+++++||...+..+.. +.+.-.+.+.+
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d 57 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG 57 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence 346889999999999999999999999999999998853 34555555544
No 41
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=96.10 E-value=0.03 Score=46.97 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=71.1
Q ss_pred ceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEE-ee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 127 DHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVW-TH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 127 ~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~-t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
+.+.|+|. .+|+||++++|...|+++|+||.--.-. +. .+...-.|.|.. . +. ++..+.|.+ +..
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~-~------~~---~~a~~~L~~-~~~ 83 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-D------VG---PAAVEKLDS-LRN 83 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET-T------TH---HHHHHHHHH-THH
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh-h------HH---HHHHHHHHH-HHH
Confidence 44555553 6799999999999999999999643221 12 244555677765 1 11 122222221 110
Q ss_pred CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA 279 (315)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp 279 (315)
+ + ...+|.++ .+.+++.|.+. ++|
T Consensus 84 e-----------------------l--------------------------~~~~v~~~----~~va~VsvVG~gm~~~~ 110 (181)
T 3s1t_A 84 E-----------------------I--------------------------GFSQLLYD----DHIGKVSLIGAGMRSHP 110 (181)
T ss_dssp H-----------------------H--------------------------CCSEEEEE----SCEEEEEEEEECCTTCH
T ss_pred h-----------------------c--------------------------CcceEEEe----CCEEEEEEEecccccCc
Confidence 0 0 00235544 35788888876 899
Q ss_pred chHHHHHhhhcCCceEEEEEE
Q 021245 280 KLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 280 GLL~~I~~~l~~~~i~I~~Ak 300 (315)
|+.+++.++|++.||+|.+..
T Consensus 111 Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 111 GVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp HHHHHHHHHHHHTTCCCCEEE
T ss_pred hHHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999998865
No 42
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=96.02 E-value=0.2 Score=47.49 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=71.6
Q ss_pred CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245 34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (315)
Q Consensus 34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (315)
+.+.|+|. .+|+||.++++...|++.|+||.--...+. +|...-.|.|...+. ++..+.|++ +...+..
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~- 335 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW- 335 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTC-
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCC-
Confidence 44567777 589999999999999999999985544332 454445677763211 122333433 2222211
Q ss_pred CCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 021245 110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVA 157 (315)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~ 157 (315)
.++.+ ..+...+.|.+. ++||.++++..+|++.|+||.
T Consensus 336 ------~~v~~----~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~ 376 (421)
T 3ab4_A 336 ------TNVLY----DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE 376 (421)
T ss_dssp ------SEEEE----ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC
T ss_pred ------ceEEE----eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEE
Confidence 01122 236677888875 899999999999999999998
No 43
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=95.98 E-value=0.014 Score=50.26 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=35.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEE
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVI 82 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-----~g~~~d~f~v~ 82 (315)
...|.|.+.||||+|++|+.+|++++.||...+.++. +|.+.-.+.+.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~ 56 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE 56 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence 4578899999999999999999999999999999874 56665444443
No 44
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=95.54 E-value=0.16 Score=48.12 Aligned_cols=109 Identities=13% Similarity=0.165 Sum_probs=72.3
Q ss_pred ceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 127 DHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 127 ~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
+.+.|+|. .+|+||.+++|.+.|+++|+||.--...|. .+...-.|.|.. . +. ++..+.|.+ +..
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~-~------~~---~~a~~~l~~-~~~ 331 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR-S------DG---RRAMEILKK-LQV 331 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET-T------TH---HHHHHHHHH-HHT
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec-h------hH---HHHHHHHHH-HHH
Confidence 45567777 689999999999999999999885543333 233444566654 1 12 122233322 211
Q ss_pred CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA 279 (315)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp 279 (315)
+.. . ..|.++ .+.+++.|.+. ++|
T Consensus 332 ~~~------------------------------------------------~-~~v~~~----~~~a~vsvVG~gm~~~~ 358 (421)
T 3ab4_A 332 QGN------------------------------------------------W-TNVLYD----DQVGKVSLVGAGMKSHP 358 (421)
T ss_dssp TTT------------------------------------------------C-SEEEEE----CCEEEEEEECGGGTSCT
T ss_pred HcC------------------------------------------------C-ceEEEe----CCeEEEEEEccCcccCc
Confidence 111 0 235554 46788999986 899
Q ss_pred chHHHHHhhhcCCceEEEEE
Q 021245 280 KLMFDIVCTLTDMQYVVFHA 299 (315)
Q Consensus 280 GLL~~I~~~l~~~~i~I~~A 299 (315)
|.+.++..+|.+.||+|..-
T Consensus 359 Gv~a~~f~aL~~~~InI~~i 378 (421)
T 3ab4_A 359 GVTAEFMEALRDVNVNIELI 378 (421)
T ss_dssp THHHHHHHHHHHTTCCCCEE
T ss_pred cHHHHHHHHHHHCCCCEEEE
Confidence 99999999999999999844
No 45
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=95.26 E-value=0.22 Score=48.02 Aligned_cols=122 Identities=11% Similarity=0.194 Sum_probs=77.8
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHH--------
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL-------- 102 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L-------- 102 (315)
+...|+|.+ +++||+++++..+|++.|+||.-....+.. .--+|.|...+ .++..+.|++.+
T Consensus 317 ~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d-----~~~a~~~L~~~l~~~~~~~~ 389 (473)
T 3c1m_A 317 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEED-----VDKALKALKREFGDFGKKSF 389 (473)
T ss_dssp EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGG-----HHHHHHHHHHHHCC----CT
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechH-----HHHHHHHHHHHHhhhccccc
Confidence 556688886 688899999999999999999855443322 12357776422 134566666666
Q ss_pred CCCCCCCCCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245 103 GPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND 176 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~ 176 (315)
...+.. .++.+ ..+...+.|.+. ++||.++++..+|++.|+||. +.+.+. ...-.|.|..
T Consensus 390 ~~~~~~-------~~v~~----~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~---misqgtSe~~Is~vV~~ 453 (473)
T 3c1m_A 390 LNNNLI-------RDVSV----DKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIK---MIAQGSSEVNISFVIDE 453 (473)
T ss_dssp TSCCCE-------EEEEE----EEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCC---EEEESSCSSEEEEEEEG
T ss_pred cccccc-------ceEEE----eCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEE---EEecCCCCceEEEEEcH
Confidence 221100 01122 235667888875 589999999999999999993 333332 3334455544
No 46
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=95.04 E-value=0.07 Score=45.54 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245 125 VGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (315)
Q Consensus 125 ~~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 200 (315)
..+...|+|. .+|+||+.++|.+.|+++|+||.----... .+.....|.+.. . ..++..+.|.+..
T Consensus 32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~-~---------d~~~~~~~l~~~~ 101 (200)
T 4go7_X 32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-D---------VGPAAVEKLDSLR 101 (200)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG-G---------GHHHHHHHHHTTH
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch-h---------hHHHHHHHHHHHH
Confidence 3466777776 589999999999999999999864321111 234444566654 1 1122222221110
Q ss_pred cCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe---CC
Q 021245 201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RD 277 (315)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a---~D 277 (315)
. .+ ....|.++. +.+.+.|.+ +.
T Consensus 102 ~------------------------~~--------------------------~~~~v~~~~----~iakVSvVG~GM~~ 127 (200)
T 4go7_X 102 N------------------------EI--------------------------GFSQLLYDD----HIGKVSLIGAGMRS 127 (200)
T ss_dssp H------------------------HH--------------------------CCSEEEEEC----CEEEEEEEEESCTT
T ss_pred h------------------------hh--------------------------ceeeEEEec----Ceeeeeeecccccc
Confidence 0 01 002344443 455666664 58
Q ss_pred CCchHHHHHhhhcCCceEEEEEE
Q 021245 278 RAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 278 RpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
+||+..++-++|++.||+|..-.
T Consensus 128 ~~GVaak~F~aLa~~~INI~mIs 150 (200)
T 4go7_X 128 HPGVTATFCEALAAVGVNIELIS 150 (200)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCCcHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999999998764
No 47
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.90 E-value=0.052 Score=44.46 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=33.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74 (315)
Q Consensus 37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~ 74 (315)
.|.|.|.||+|++++|+.+|+..++||....+.+. |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 57899999999999999999999999999988666 43
No 48
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=93.53 E-value=0.4 Score=45.84 Aligned_cols=120 Identities=16% Similarity=0.237 Sum_probs=73.8
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|+|.+ ++.||.+++|...|++.|++|.- |.+.... -+|.|...+-.. ....+.+.+++.+..
T Consensus 297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~~~~~--is~~V~~~d~~~-~~~~~~~el~~~~~~------ 365 (446)
T 3tvi_A 297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPSGVDS--VSLVIEDCKLDG-KCDKIIEEIKKQCNP------ 365 (446)
T ss_dssp EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCEETTE--EEEEEEHHHHTT-THHHHHHHHHHHSCC------
T ss_pred CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--EecCCCE--EEEEEecchHHH-HHHHHHHHHHHhcCC------
Confidence 344577775 68999999999999999999973 3332221 347775432111 011233344433321
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
-++.+. .+...|.|.|. .+||+.+++.++|++.|+||.-. +.| ...--.|.|..
T Consensus 366 -----~~v~v~----~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mI---sqgtSei~Is~vV~~ 423 (446)
T 3tvi_A 366 -----DSIEIH----PNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMI---DQGSSEINVIVGVET 423 (446)
T ss_dssp -----SEEEEE----EEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEE---EECSCTTEEEEEEEG
T ss_pred -----CcEEEe----CCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEE---EecCCCceEEEEEcH
Confidence 012222 26678888875 58999999999999999998643 233 23334455554
No 49
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=93.11 E-value=0.25 Score=46.70 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=44.7
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
+...+.+.-.|+||.+..|+.+|+++|+||......+.|+.+..++.+..
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~ 379 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA 379 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence 45678899999999999999999999999999999997888888887765
No 50
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=92.71 E-value=0.53 Score=45.33 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=72.1
Q ss_pred CceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245 126 GDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (315)
Q Consensus 126 ~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 202 (315)
.+.+.|.|.+ .++||+++++..+|+++|+||.-..-.| +...-.|.|.. . ..++..+.|.+.+-.
T Consensus 316 ~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~t--se~~Is~~V~~-~---------d~~~a~~~L~~~l~~ 383 (473)
T 3c1m_A 316 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS--SETNISLVVSE-E---------DVDKALKALKREFGD 383 (473)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC--TTCCEEEEEEG-G---------GHHHHHHHHHHHHCC
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecC--CCCEEEEEEec-h---------HHHHHHHHHHHHHhh
Confidence 3567788886 6889999999999999999987544322 22334566654 1 112333334333310
Q ss_pred CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCC---CCEEEEeecCCCCeeEEEEEeC---
Q 021245 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSF---KPEITVERLEDKGYSVVNVKCR--- 276 (315)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~V~i~~~~~~~~tvieV~a~--- 276 (315)
-.. +.+.. -..|.++ .+.+++.|.+.
T Consensus 384 ~~~--------------------------------------------~~~~~~~~~~~v~~~----~~~a~vsvVG~gm~ 415 (473)
T 3c1m_A 384 FGK--------------------------------------------KSFLNNNLIRDVSVD----KDVCVISVVGAGMR 415 (473)
T ss_dssp ------------------------------------------------CTTSCCCEEEEEEE----EEEEEEEEECTTTT
T ss_pred hcc--------------------------------------------cccccccccceEEEe----CCcEEEEEEecCCC
Confidence 000 00000 0235554 35789999986
Q ss_pred CCCchHHHHHhhhcCCceEEEEE
Q 021245 277 DRAKLMFDIVCTLTDMQYVVFHA 299 (315)
Q Consensus 277 DRpGLL~~I~~~l~~~~i~I~~A 299 (315)
++||.+.++..+|.+.||+|..-
T Consensus 416 ~~~Gvaak~f~aL~~~~InI~mi 438 (473)
T 3c1m_A 416 GAKGIAGKIFTAVSESGANIKMI 438 (473)
T ss_dssp TCTTHHHHHHHHHHHHTCCCCEE
T ss_pred CChhHHHHHHHHHHHCCCCEEEE
Confidence 59999999999999999999554
No 51
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=92.25 E-value=0.56 Score=45.77 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=44.0
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
.+.+..+.+.-+|+||.+..|+..|.++|+||.+.++... ++.+...+.+.+
T Consensus 451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~ 504 (529)
T 1ygy_A 451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ 504 (529)
T ss_dssp ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS
T ss_pred cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC
Confidence 3456788899999999999999999999999999999864 466777777755
No 52
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=91.27 E-value=6.6 Score=38.04 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=76.3
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCC-ChhHHHHHHHHHCCCCCCC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT 109 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~-~~~~~~~l~~~L~~~~~~~ 109 (315)
+.+.|+|.+ .+.||.++++..+|++.|++|.-. .+...- -+|.|...+..... ..+..+.+.+.|....
T Consensus 340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~s--is~~v~~~~~~~~~~~~~~l~~~~~el~~~~--- 412 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVS--ISLTLDPSKLWSRELIQQELDHVVEELEKIA--- 412 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTE--EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCCe--EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence 456677875 689999999999999999999844 442221 24666432211110 1234455555554311
Q ss_pred CCcccCCceeeeecCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 110 AGAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
++.+. .+...|.|.+. ..||+.+++..+|++.|+||.-. +.| ...--.|.|..
T Consensus 413 -------~v~~~----~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI---sqGsSei~Is~vV~~ 468 (510)
T 2cdq_A 413 -------VVNLL----KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMI---SQGASKVNISFIVNE 468 (510)
T ss_dssp -------EEEEE----EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE---EECTTCSEEEEEEEH
T ss_pred -------eEEEe----CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE---EecCCcceEEEEEeH
Confidence 22222 25567777776 88899999999999999998642 334 33444566654
No 53
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=90.26 E-value=0.92 Score=42.74 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=42.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~ 82 (315)
+...|.+.-.|+||.+..|..+|.+.|+||......+.++.++-++-+.
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD 378 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE 378 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence 4567889999999999999999999999999999999888876555443
No 54
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=89.95 E-value=0.49 Score=44.81 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=42.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCC
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ 85 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~ 85 (315)
.+...|++.=+|.||.+.+|..+|++.|+||.+-...|.+++. |.+.|-+
T Consensus 341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~---y~~~d~~ 390 (416)
T 3k5p_A 341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG---YLVMEAD 390 (416)
T ss_dssp SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE---EEEEEEC
T ss_pred CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE---EEEEEec
Confidence 3678999999999999999999999999999988878888766 4555544
No 55
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=89.40 E-value=1.1 Score=36.15 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=67.9
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+...|+|.+ ++.||..+++...|++.|+||. -|.+... --+|.+.+.+ ...++.+.|....
T Consensus 17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~s~~--~Isf~v~~~~--------~~~~il~~l~~~~---- 80 (157)
T 3mah_A 17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVATSEV--GVSLTIDNDK--------NLPDIVRALSDIG---- 80 (157)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEECCSS--EEEEEESCCT--------THHHHHHHHTTTE----
T ss_pred CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEecCC--EEEEEECChH--------HHHHHHHHHhccC----
Confidence 667888874 4789999999999999999997 3344222 1346664321 1233333443310
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
.+.+. .+...|.+.|. ++||+.+++..+|+ |+||.-. +.+ ....-.|.|..
T Consensus 81 ------~v~~~----~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~i---sqg~Se~~is~vv~~ 135 (157)
T 3mah_A 81 ------DVTVD----KDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMI---SYGGSNYNVSVLVKA 135 (157)
T ss_dssp ------EEEEE----EEEEEEEEEC------CCHHHHHHHTTT--TSCCSEE---EECSSSSCEEEEEEG
T ss_pred ------eEEEe----CCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEE---eeCCCCCEEEEEEcH
Confidence 11222 25577777764 68999999999999 8887642 223 23334555554
No 56
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=88.27 E-value=1.5 Score=41.54 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=43.5
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEE
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~ 175 (315)
.+...|.+.-+|.||.+.+|..+|+++|+||..-...|.++.+..+.-|.
T Consensus 341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~ 390 (416)
T 3k5p_A 341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD 390 (416)
T ss_dssp SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence 35689999999999999999999999999999988888887776666554
No 57
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=88.23 E-value=1.2 Score=42.44 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=69.5
Q ss_pred ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245 127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (315)
Q Consensus 127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 203 (315)
+.+.|+|.+ .+.||++++|..+|+++|++|.-. .+ + ...-.|.|.. . .+. ....++.+.|...+.
T Consensus 297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~-~~~is~~V~~-~---d~~--~~~~~~~~el~~~~~-- 364 (446)
T 3tvi_A 297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-G-VDSVSLVIED-C---KLD--GKCDKIIEEIKKQCN-- 364 (446)
T ss_dssp EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-E-TTEEEEEEEH-H---HHT--TTHHHHHHHHHHHSC--
T ss_pred CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-C-CCEEEEEEec-c---hHH--HHHHHHHHHHHHhcC--
Confidence 456677775 689999999999999999999743 22 1 2233466654 1 110 011222233322111
Q ss_pred CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCCc
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK 280 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRpG 280 (315)
...|.++. +.+++.|.+. .+||
T Consensus 365 ---------------------------------------------------~~~v~v~~----~vA~VSvVG~gM~~~~G 389 (446)
T 3tvi_A 365 ---------------------------------------------------PDSIEIHP----NMALVATVGTGMAKTKG 389 (446)
T ss_dssp ---------------------------------------------------CSEEEEEE----EEEEEEEECGGGSSCTT
T ss_pred ---------------------------------------------------CCcEEEeC----CeEEEEEECCCccCChh
Confidence 12355543 5788988876 5999
Q ss_pred hHHHHHhhhcCCceEEEEEE
Q 021245 281 LMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 281 LL~~I~~~l~~~~i~I~~Ak 300 (315)
+..++-++|.+.||+|....
T Consensus 390 vaarif~aLa~~~InI~mIs 409 (446)
T 3tvi_A 390 IANKIFTALSKENVNIRMID 409 (446)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999998754
No 58
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=87.71 E-value=1.7 Score=42.32 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (315)
....+.+.-+|+||.+.+++..|.+.|+||...++.. .+|.++-.+.+.+ .++ ++..++|++
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~----~~~-~~~l~~l~~ 516 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ----DVP-DDVRTAIAA 516 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS----CCC-HHHHHHHHH
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC----CCC-HHHHHHHhc
Confidence 4567788899999999999999999999999999985 4676764555532 222 446666664
No 59
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=86.86 E-value=1.9 Score=38.63 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=39.0
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~ 176 (315)
..|.|.+..+|+||-|+++.+.|+.+|+|+..-+..-..+ ...=.|+|.-
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~ 249 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF 249 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE
Confidence 3466767778999999999999999999998766655443 4556788865
No 60
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=86.26 E-value=5.5 Score=36.33 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=37.1
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEeeCCeE-EEEEEEEeCCCCCc
Q 021245 129 TAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHNRRI-ACVLYVNDDTTCRA 182 (315)
Q Consensus 129 t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~-~d~F~V~~~~~g~~ 182 (315)
+.+.+..+ |+||-|+++.+.|+.+|+|+..-+..-..+.. .=.|+|.- .|..
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~ 261 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAP 261 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCT
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCc
Confidence 44444444 79999999999999999999877666555544 44677754 4543
No 61
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=85.24 E-value=2.4 Score=38.50 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=38.0
Q ss_pred ceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245 127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~~-DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~ 176 (315)
..|.|.+..+ |+||-|+++.+.|+.+|+|+..-+..-..+ ...=.|+|.-
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 4577777775 999999999999999999998766654433 3344677754
No 62
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=83.83 E-value=9.1 Score=34.90 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=38.9
Q ss_pred eEEEEEEec--CCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHH
Q 021245 35 CTVVKVDSV--NKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIE 99 (315)
Q Consensus 35 ~~~v~V~~~--DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~ 99 (315)
.+.+.+..+ |+||-|+++.+.|+..|+|...-.-.. .++..--.|+| |-+|. ..++...+.|+
T Consensus 206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~-~~d~~v~~AL~ 271 (329)
T 3luy_A 206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAA-PWEERFRDALV 271 (329)
T ss_dssp EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSC-TTSHHHHHHHH
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCC-cCCHHHHHHHH
Confidence 344444444 799999999999999999999443332 33333334665 45665 33444444443
No 63
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=81.72 E-value=3.3 Score=37.00 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=40.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHH
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYI 98 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l 98 (315)
..+.|.+..+|+||-|+++.+.|+..|+|...-.-.. .++..--.|+|. -+|. ..++...+.|
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD-~eg~-~~d~~v~~aL 262 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYAD-FIGH-REDQNVHNAL 262 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEE-EESC-TTSHHHHHHH
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEE-EecC-CCcHHHHHHH
Confidence 3566777778999999999999999999999433332 332222246664 4454 3334333333
No 64
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=80.48 E-value=8.6 Score=33.96 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=38.8
Q ss_pred ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
..|.|.+.. +|+||-|+++.+.|+.+|+|+..-+..-.. +...=.|+|.-
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 456666666 899999999999999999999876665544 33556788876
No 65
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=79.26 E-value=3.8 Score=37.18 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred CeEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHH
Q 021245 34 ECTVVKVDSV-NKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTID 96 (315)
Q Consensus 34 ~~~~v~V~~~-DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~ 96 (315)
+.+.|.+..+ |+||-|+++.+.|+..|+|...-.-.. .++..--.|+|. -+|. ..++...+
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~eg~-~~d~~v~~ 262 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSID-ADGH-ATDSRVAD 262 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEE-EESC-TTSHHHHH
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEE-EeCC-CCcHHHHH
Confidence 5677777775 999999999999999999999433332 222111236664 3454 33443333
No 66
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=76.70 E-value=5.1 Score=38.82 Aligned_cols=110 Identities=10% Similarity=0.170 Sum_probs=68.9
Q ss_pred ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245 127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (315)
Q Consensus 127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 203 (315)
+.+.|.|.+ .++||++++|..+|+++|+||.-.. |. ..--+|.|.. .+.... +. ..+.+++.+ ..|..
T Consensus 340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--ss--e~sis~~v~~-~~~~~~-~~-~~~~l~~~~-~el~~- 410 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TS--EVSISLTLDP-SKLWSR-EL-IQQELDHVV-EELEK- 410 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EE--TTEEEEEECC-GGGSSS-CC-CHHHHHHHH-HHHTT-
T ss_pred CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eC--CCeEEEEEec-hHhhhh-hH-HHHHHHHHH-HHhCC-
Confidence 567788875 6899999999999999999998652 21 2333566644 111110 00 001111111 11110
Q ss_pred CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC--CCCch
Q 021245 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR--DRAKL 281 (315)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~--DRpGL 281 (315)
-..|.++. +.+++.|.+. ..||+
T Consensus 411 ---------------------------------------------------~~~v~~~~----~~a~VsiVG~m~~~~Gv 435 (510)
T 2cdq_A 411 ---------------------------------------------------IAVVNLLK----GRAIISLIGNVQHSSLI 435 (510)
T ss_dssp ---------------------------------------------------TSEEEEEE----EEEEEEEEECGGGHHHH
T ss_pred ---------------------------------------------------CCeEEEeC----CcEEEEEEEECCCChhH
Confidence 02355543 4678888877 78999
Q ss_pred HHHHHhhhcCCceEEEEEE
Q 021245 282 MFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 282 L~~I~~~l~~~~i~I~~Ak 300 (315)
..++-.+|.+.||+|....
T Consensus 436 aa~~f~aL~~~~InI~mIs 454 (510)
T 2cdq_A 436 LERAFHVLYTKGVNVQMIS 454 (510)
T ss_dssp HHHHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHHHCCCCEEEEE
Confidence 9999999999999997653
No 67
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=75.64 E-value=2.8 Score=39.90 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=35.3
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~ 176 (315)
...+-+.+...|+||.|++|+++|.++|++|.+..=.-. ++....+..+|.
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th 409 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH 409 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence 355678888999999999999999999999986432211 112345666665
No 68
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=73.49 E-value=8.8 Score=33.89 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=35.0
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQ 84 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~ 84 (315)
..+.|.+.. +|+||-|+++.+.|+..|+|...-.-.. .++..--.|+|.-.
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 456666666 8999999999999999999999443332 22211124777533
No 69
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=66.56 E-value=2.7 Score=40.06 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.5
Q ss_pred EEEEEeCCCCchHHHHHhhhcCCceEEEEEE
Q 021245 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300 (315)
Q Consensus 270 vieV~a~DRpGLL~~I~~~l~~~~i~I~~Ak 300 (315)
-+.+...|+||.|.+|+.+|.+.||+|.+..
T Consensus 361 y~r~~~~d~~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 361 YLRLRAFDRPGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence 4558899999999999999999999998753
No 70
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=55.22 E-value=21 Score=33.69 Aligned_cols=51 Identities=8% Similarity=0.126 Sum_probs=39.0
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~ 176 (315)
...|.|.+..+|+||-|+++.+.|+.+|+|+..-+..-.. +...=.|+|.-
T Consensus 32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~ 83 (429)
T 1phz_A 32 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL 83 (429)
T ss_dssp SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEE
Confidence 3567777777999999999999999999999766655443 33455788865
No 71
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=52.89 E-value=22 Score=33.73 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=69.7
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (315)
Q Consensus 34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (315)
+.+.|+|.+ .+.+|.++++..+|++.|++|.- |.+.. . --+|.|...+...-......+++...|....
T Consensus 307 ~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~--i~ss~-~-sis~~v~~~~~~~~~~~~~~~~~~~el~~~~---- 378 (449)
T 2j0w_A 307 NQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDL--ITTSE-V-SVALTLDTTGSTSTGDTLLTQSLLMELSALC---- 378 (449)
T ss_dssp EEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSE--EEEET-T-EEEEEECCCCCSSTTCCSSCHHHHHHHHHHS----
T ss_pred CEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEE--EEeCC-C-eEEEEEeccccchhhHHHHHHHHHHHhccCC----
Confidence 445566765 47789999999999999999983 33422 1 1356665432211000122334443333210
Q ss_pred CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND 176 (315)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~ 176 (315)
++.+. .+...|.|.+. ..||+.+++..+|++ +||. +.+.|. ..--.|.|..
T Consensus 379 ------~v~~~----~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~---mIsqg~Se~~Is~vV~~ 433 (449)
T 2j0w_A 379 ------RVEVE----EGLALVALIGNDLSKACGVGKEVFGVLEP--FNIR---MICYGASSHNLCFLVPG 433 (449)
T ss_dssp ------CEEEE----EEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCC---EEEESSCTTEEEEEEEG
T ss_pred ------eEEEe----CCeEEEEEECCCccccccHHHHHHHHHhC--CCeE---EEEecCCCcEEEEEEeH
Confidence 12222 26678888887 688999999999966 6654 334442 3334566654
No 72
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=47.58 E-value=64 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=36.0
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCce-EEEEEEEeeCCEEEEEEEEEcCCCCCC
Q 021245 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLI-ITKAYISSDGGWFMDVFHVIDQQGKKI 89 (315)
Q Consensus 34 ~~~~v~V~~~DrpGLl~~i~~~L~~~gln-I~~A~I~t~~g~~~d~f~v~~~~g~~~ 89 (315)
+...+.+.+.| +..+...|.+.|.. +...-.....|.. +++.|++|+.+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~~---~~~~DPdGn~i 115 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGKK---AIVLDPDGHSI 115 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CEE---EEEECTTCCEE
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCccE---EEEECCCCCEE
Confidence 45667778888 78888999999999 7754433444543 88999999864
No 73
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=44.40 E-value=15 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (315)
Q Consensus 33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (315)
...+.|.+..+|+||-|+++.+.|+..|+|+. +|-+
T Consensus 32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLT--kIES 67 (429)
T 1phz_A 32 NGAISLIFSLKEEVGALAKVLRLFEENDINLT--HIES 67 (429)
T ss_dssp SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTT--SEEE
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHcCCceE--EEEe
Confidence 35677777789999999999999999999999 5544
No 74
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=40.23 E-value=57 Score=31.46 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=76.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCC----CCC
Q 021245 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH----ITA 110 (315)
Q Consensus 35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----~~~ 110 (315)
...+.|.-+|+||-|.+++.+|. +-||.+-.=...+......+....-.+. ++..+.|.+.|....- +.+
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~l~~~g~~~~~~~~ 411 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFADAKNACIFVGVRLSRG----LEERKEILQMLNDGGYSVVDLSD 411 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECCCSSBCEEEEEEECSST----HHHHHHHHHHHTSSSCEEETTSS
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeeccCCCeEEEEEEEEeCCc----HHHHHHHHHHHHhCCCCeEECCC
Confidence 35677888999999999999888 6888865443222112223444332221 3567888888876531 111
Q ss_pred C--cccCCceeeeecC--CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC---CeEEEEEEEEe
Q 021245 111 G--AKTWPSKQVGVHS--VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN---RRIACVLYVND 176 (315)
Q Consensus 111 ~--~~~~~~~~v~~~~--~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~---~~~~d~F~V~~ 176 (315)
. .+...+--|--.. ..+--...+.-|.|||-|.+....|.. +.||.--+-..+| |+++--|.|.+
T Consensus 412 ~~~~~~h~~~~~g~~~~~~~~e~~~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g~~~~~~~~~~~~~~ 483 (514)
T 1tdj_A 412 DEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHGTDYGRVLAAFELGD 483 (514)
T ss_dssp CHHHHHTGGGTCCCCCSSCCCCEEEEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTTTCSSCEEEEEC---
T ss_pred CHHHHHHHHHhhCCcCccCCCceEEEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCCCCcccEEEEEEcCC
Confidence 0 0000000000000 123345677899999999999999974 5666554444444 67777777755
No 75
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=36.70 E-value=23 Score=28.03 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=27.5
Q ss_pred CceEEEEEEe---CCcccHHHHHHHHHHhCCceEEE
Q 021245 126 GDHTAIELIG---RDRPGLLSEISAVLANLRFNVAA 158 (315)
Q Consensus 126 ~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~ 158 (315)
.+.+.|+|.+ +++||..+++.+.|+++|+||.-
T Consensus 16 ~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~ 51 (157)
T 3mah_A 16 DGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDM 51 (157)
T ss_dssp EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSC
T ss_pred CCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEE
Confidence 3567788774 58999999999999999999854
No 76
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=29.87 E-value=25 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCeeEEEEEeC---CCCchHHHHHhhhcCCceEEEE
Q 021245 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFH 298 (315)
Q Consensus 266 ~~~tvieV~a~---DRpGLL~~I~~~l~~~~i~I~~ 298 (315)
..|-.|.|... |-.|+++.|+..|++.||+|+.
T Consensus 60 ~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~ 95 (134)
T 1zhv_A 60 PGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFV 95 (134)
T ss_dssp EEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEE
T ss_pred CCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEE
Confidence 35667777654 8889999999999999999986
No 77
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=29.63 E-value=57 Score=25.43 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=30.6
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDG 72 (315)
Q Consensus 34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~ 72 (315)
++..|+|.++ |-.|+++.+++.|++.|+.|. -|+|.+
T Consensus 61 ~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif--~iSty~ 100 (134)
T 1zhv_A 61 GWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIF--VVSTFD 100 (134)
T ss_dssp EEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCE--EEECSS
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeE--EEEecc
Confidence 5557777766 888999999999999999998 677744
No 78
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=29.46 E-value=82 Score=29.68 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=32.9
Q ss_pred ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245 127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (315)
Q Consensus 127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~ 176 (315)
+.+.|+|.+ .+.||++++|..+|+++|++|.-.. +. ..--+|.|..
T Consensus 307 ~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~--ss--~~sis~~v~~ 355 (449)
T 2j0w_A 307 NQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TS--EVSVALTLDT 355 (449)
T ss_dssp EEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEE--EE--TTEEEEEECC
T ss_pred CEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEE--eC--CCeEEEEEec
Confidence 556777765 4788999999999999999987544 22 2334566654
No 79
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=28.77 E-value=1.7e+02 Score=21.35 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=34.4
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCce-EEEEEEEeeCCeEEEEEEEEeCCCCCcC
Q 021245 127 DHTAIELIGRDRPGLLSEISAVLANLRFN-VAAAEVWTHNRRIACVLYVNDDTTCRAV 183 (315)
Q Consensus 127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~-I~~A~i~t~~~~~~d~F~V~~~~~g~~~ 183 (315)
.++.+.+.+.| +..+...|.++|+. +...-.....|.. |++.| ++|..+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~~---~~~~D-PdGn~i 115 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGKK---AIVLD-PDGHSI 115 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CEE---EEEEC-TTCCEE
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCccE---EEEEC-CCCCEE
Confidence 45677888888 78888889999999 7653322222322 89999 888764
No 80
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=28.15 E-value=39 Score=26.41 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=28.1
Q ss_pred CCeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEE
Q 021245 266 KGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHA 299 (315)
Q Consensus 266 ~~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~A 299 (315)
..|..|.|.. .|-.|+++.|+..|++.||+|+..
T Consensus 69 ~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~i 105 (133)
T 1zvp_A 69 ALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVI 105 (133)
T ss_dssp SCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEE
T ss_pred CCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEE
Confidence 4677777765 599999999999999999999863
No 81
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=25.63 E-value=1.2e+02 Score=21.89 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEee
Q 021245 278 RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVL 314 (315)
Q Consensus 278 RpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v 314 (315)
..-+++++++.| ...++|.+|.|...+++..-.+.|
T Consensus 36 ~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v 71 (100)
T 2qsw_A 36 KLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYI 71 (100)
T ss_dssp SSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEE
Confidence 356788998888 589999999999999998877765
No 82
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=25.47 E-value=1.8e+02 Score=21.96 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=33.7
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCC
Q 021245 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (315)
Q Consensus 36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~ 89 (315)
..+.+...| +..+...|.+.|+.+...-.....|+ .|++.|++|+.+
T Consensus 67 ~hl~f~V~d----~d~~~~~l~~~G~~v~~~p~~~~~G~---~~~~~DPdG~~i 113 (144)
T 3r6a_A 67 TQATFLVDS----LDKFKTFLEENGAEIIRGPSKVPTGR---NMTVRHSDGSVI 113 (144)
T ss_dssp CCEEEEESC----HHHHHHHHHHTTCEEEEEEEEETTEE---EEEEECTTSCEE
T ss_pred eEEEEEeCC----HHHHHHHHHHcCCEEecCCccCCCce---EEEEECCCCCEE
Confidence 344455555 67788889999999987655555563 478999999864
No 83
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=25.13 E-value=99 Score=22.66 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEee
Q 021245 277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVL 314 (315)
Q Consensus 277 DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v 314 (315)
+.| +++++++.+ ...+||.+|.|...++.+.-.+.|
T Consensus 34 ~~P-iIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v 69 (106)
T 3dhx_A 34 DAP-LLSETARRF-NVNNNIISAQMDYAGGVKFGIMLT 69 (106)
T ss_dssp TCC-HHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEE
T ss_pred Chh-HHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEE
Confidence 444 888988887 488999999999999998877765
No 84
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=24.68 E-value=1.2e+02 Score=21.84 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=29.7
Q ss_pred CchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEee
Q 021245 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVL 314 (315)
Q Consensus 279 pGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v 314 (315)
.-+++++++.| ...++|.+|.|...+++..-.+.|
T Consensus 37 ~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v 71 (101)
T 2qrr_A 37 APLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVA 71 (101)
T ss_dssp SCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEE
T ss_pred chHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEE
Confidence 46788888887 589999999999999988877765
No 85
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=23.95 E-value=1.5e+02 Score=22.90 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=31.5
Q ss_pred CCCeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245 32 CPECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDG 72 (315)
Q Consensus 32 ~~~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~ 72 (315)
+.++..|++.+ -|-.|+++.+++.|++.|+.|. -|+|.+
T Consensus 68 ~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif--~iSty~ 109 (133)
T 1zvp_A 68 SALFSLITLTVHSSLEAVGLTAAFATKLAEHGISAN--VIAGYY 109 (133)
T ss_dssp CSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCE--EEECSS
T ss_pred CCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcE--EEEecc
Confidence 44667777766 5999999999999999999998 667744
No 86
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=21.13 E-value=2.6e+02 Score=20.78 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=46.5
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhC---CceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245 32 CPECTVVKVDSVNKPGILLEVVQVLSDL---DLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (315)
Q Consensus 32 ~~~~~~v~V~~~DrpGLl~~i~~~L~~~---glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (315)
.+-...+.|.+++.+++...|..++... +..+ ..+-+..|.+..-+..|. +..++-+..|-+.|..
T Consensus 33 FPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~------v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 33 FPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITIN------ATHIEQVETLYEELGK 101 (109)
T ss_dssp CCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEEC------CSSHHHHHHHHHHHSC
T ss_pred CCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhc
Confidence 4567889999999999999999999987 7777 334444566655444443 3334567777777765
No 87
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=20.96 E-value=2.6e+02 Score=20.76 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=43.8
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhC---CceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245 126 GDHTAIELIGRDRPGLLSEISAVLANL---RFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196 (315)
Q Consensus 126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~---~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L 196 (315)
+..+.+.|.+.+.+++...|..++..+ +..+ ..+-+..|.+..-+..|.- .+.+++..|=++|
T Consensus 34 Pc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v-------~S~eQv~aiY~~L 99 (109)
T 1rwu_A 34 PTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINA-------THIEQVETLYEEL 99 (109)
T ss_dssp CCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECC-------SSHHHHHHHHHHH
T ss_pred CCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 456899999999999999999999987 6776 3455555666665555544 2344554444444
Done!