BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021247
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 190/314 (60%), Gaps = 17/314 (5%)
Query: 2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGH 59
++ L E AH++++W+V W + ++TGSLD+ VK+W R + + L+ + GH
Sbjct: 20 QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH 79
Query: 60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
LGVVSV + IAAS+SLD+ +R++D++ I +++A P + W + F P LA
Sbjct: 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 120 AGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179
G+ K+ N+ S G K + KF+LS+A+SPDG+ +A G++D
Sbjct: 140 ---GTHVGKV------NIFGVES-----GKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Query: 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
G I++FD+ K LH LEGH MP+RSL +SP D ++L +ASDD ++ +YD + +L +
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL 244
Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
SGHASWVL+V PD + SSD++VK+WD+ R + + +H DQVWGV + G +
Sbjct: 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
Query: 300 VVSVSDDKSISLYE 313
+VSV DD+ I +Y+
Sbjct: 305 IVSVGDDQEIHIYD 318
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 25/304 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H SVW V + P +T + + S D+TVKLW + QL +T TGH V VA P
Sbjct: 55 GHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPD 109
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G ASAS D V++++ + + TL S VW + F P G T+A A +VKLW+
Sbjct: 110 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 167
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
L+ TL T SSS V VA+SPDG+ IA S D T+ +++ +
Sbjct: 168 RNG-QLLQTL----------TGHSSS---VWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 212
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L L GH VR + +SP D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 213 LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAF 270
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
PDG I + S D+TVKLW+ N + +Q++T H+ VWGV+F P G + S SDDK++ L
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Query: 312 YEYS 315
+ +
Sbjct: 330 WNRN 333
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 164/304 (53%), Gaps = 25/304 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H SV V + P +T + + S D+TVKLW + QL +T TGH V VA P
Sbjct: 96 GHSSSVRGVAFSPDGQT----IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPD 150
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G ASAS D V++++ + + TL S VW + F P G T+A A +VKLW+
Sbjct: 151 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 208
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
L+ TL T SSS V VA+SPDG+ IA S D T+ +++ +
Sbjct: 209 RNG-QLLQTL----------TGHSSS---VRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 253
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L L GH V + + P D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 254 LLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAF 311
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
SPDG I + S D+TVKLW+ N + +Q++T H+ VWGV+F P G + S SDDK++ L
Sbjct: 312 SPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 312 YEYS 315
+ +
Sbjct: 371 WNRN 374
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 162/302 (53%), Gaps = 25/302 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H SVW V + P +T + + S D+TVKLW + L+ T TGH V VA P
Sbjct: 301 GHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSPD 355
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G ASAS D V++++ + + TL S V + F P G T+A A +VKLW+
Sbjct: 356 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWN 413
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
L+ TL T SSS V VA+SPD + IA S D T+ +++ +
Sbjct: 414 RNG-QLLQTL----------TGHSSS---VWGVAFSPDDQTIASASDDKTVKLWN-RNGQ 458
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L L GH VR + +SP D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 459 LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 516
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
SPDG I + S D+TVKLW+ N + +Q++T H+ VWGV+F P G + S S DK++ L
Sbjct: 517 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Query: 312 YE 313
+
Sbjct: 576 WN 577
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 164/304 (53%), Gaps = 25/304 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H SVW V + P +T + + S D+TVKLW + QL +T TGH V VA P
Sbjct: 178 GHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPD 232
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G ASAS D V++++ + + TL S V + F P G T+A A +VKLW+
Sbjct: 233 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWN 290
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
L+ TL T SSS V VA+SPDG+ IA S D T+ +++ +
Sbjct: 291 RNG-QLLQTL----------TGHSSS---VWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 335
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L L GH V + +SP D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 336 HLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 393
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
SPDG I + S D+TVKLW+ N + +Q++T H+ VWGV+F P + S SDDK++ L
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Query: 312 YEYS 315
+ +
Sbjct: 453 WNRN 456
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 164/304 (53%), Gaps = 25/304 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H SV V + P +T + + S D+TVKLW + QL +T TGH V VA P
Sbjct: 260 GHSSSVNGVAFRPDGQT----IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPD 314
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G ASAS D V++++ + + TL S VW + F P G T+A A +VKLW+
Sbjct: 315 GQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 372
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
L+ TL T SSS V VA+SPDG+ IA S D T+ +++ +
Sbjct: 373 RNG-QLLQTL----------TGHSSS---VRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 417
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L L GH V + +SP D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 418 LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 475
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
SPDG I + S D+TVKLW+ N + +Q++T H+ V GV+F P G + S SDDK++ L
Sbjct: 476 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Query: 312 YEYS 315
+ +
Sbjct: 535 WNRN 538
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 165/304 (54%), Gaps = 25/304 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
AH SV V + P +T + + S D+TVKLW + QL +T TGH V VA P
Sbjct: 14 AHSSSVRGVAFSPDGQT----IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPD 68
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G ASAS D V++++ + + TL S V + F P G T+A A +VKLW+
Sbjct: 69 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLWN 126
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
L+ TL T SSS V VA+SPDG+ IA S D T+ +++ +
Sbjct: 127 RNG-QLLQTL----------TGHSSS---VWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L L GH V + +SP D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 172 LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 229
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
SPDG I + S D+TVKLW+ N + +Q++T H+ V GV+FRP G + S SDDK++ L
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 312 YEYS 315
+ +
Sbjct: 289 WNRN 292
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157
LEA S V + F P G T+A A +VKLW+ L+ TL T SSS
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNG-QLLQTL----------TGHSSS 59
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
V VA+SPDG+ IA S D T+ +++ + L L GH VR + +SP D + +
Sbjct: 60 ---VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIA 114
Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
SASDD V +++ G+ L+ ++GH+S V V SPDG I + S D+TVKLW+ N +
Sbjct: 115 SASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL- 172
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+Q++T H+ VWGV+F P G + S SDDK++ L+ +
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250
K + LE H VR + +SP D + + SASDD V +++ G+ L+ ++GH+S V V
Sbjct: 7 KERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVA 64
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
SPDG I + S D+TVKLW+ N + +Q++T H+ V GV+F P G + S SDDK++
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 311 LYEYS 315
L+ +
Sbjct: 124 LWNRN 128
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 133 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 238
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 302 S--VSDDKSISLYE 313
S + +DK+I LY+
Sbjct: 299 SAALENDKTIKLYK 312
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 85
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 206 NGKYILAATLDNTLKLWDYS 225
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVS 98
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 133 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 238
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 299 SAALENDKTIKLFK 312
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 85
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 206 NGKYILAATLDNTLKLWDYS 225
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVS 98
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 146
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 147 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 252
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 312
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 313 SAALENDKTIKLWK 326
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 99
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 220 NGKYILAATLDNTLKLWDYS 239
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVS 112
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 130 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 235
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 296 SAALENDKTIKLWK 309
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 82
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 203 NGKYILAATLDNTLKLWDYS 222
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVS 95
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 130 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 235
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 296 SAALENDKTIKLWK 309
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVS 95
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 130
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 131 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 236
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 296
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 297 SAALENDKTIKLWK 310
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 83
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 84 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 204 NGKYILAATLDNTLKLWDYS 223
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVS 96
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 136 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 241
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 302 SAALENDKTIKLWK 315
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 88
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 209 NGKYILAATLDNTLKLWDYS 228
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVS 101
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 153
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 154 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 259
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 319
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 320 SAALENDKTIKLWK 333
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVS 119
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 136 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 241
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 302 SAALENDKTIKLWK 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVS 101
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 134
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 135 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 240
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 300
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 301 SAALENDKTIKLWK 314
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVS 100
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 136 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 241
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 302 SAALENDKTIKLWK 315
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVS 101
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 125
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 126 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 231
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 291
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 292 SAALENDKTIKLWK 305
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 78
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 199 NGKYILAATLDNTLKLWDYS 218
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVS 91
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 128
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 129 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 234
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 294
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 295 SAALENDKTIKLWK 308
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 146 PEGLKPTDKSSSKKFVL--------SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE 197
P G P + + KF L SV +SP+G +A S D I ++ KF +
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAA 257
GH + + + +S D +L SASDD + ++D + + GH+++V + +P
Sbjct: 62 GHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 258 ITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
I +GS D +V++WD+ ++++ H+D V V F G +VS S D
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVS 94
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVV 64
LK H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 65 SVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFD 150
Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184
SV++WD T + TL P P V +V ++ DG I S DG +
Sbjct: 151 ESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHA 243
+D + L L P S V + + + +A+ D + ++D ++GK L T +GH
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHK 256
Query: 244 SWVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV 300
+ + A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 316
Query: 301 VS--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 317 ASAALENDKTIKLWK 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVS 117
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 25/314 (7%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK H ++V +V + P E L S D+ +K+W D + E+T +GH LG+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE----WLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
VA + SAS D ++++DV + + TL+ + V+ F+P+ + L V+G
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
SV++WD T + TL P P V +V ++ DG I S DG ++
Sbjct: 133 SVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHAS 244
D + L L P S V + + + +A+ D + ++D ++GK L T +GH +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN 238
Query: 245 WVLSVDAS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
+ A+ G I +GS D V +W+L + +Q + HTD V + P +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 302 S--VSDDKSISLYE 313
S + +DK+I L++
Sbjct: 299 SAALENDKTIKLWK 312
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218
K V SV +SP+G +A S D I ++ KF + GH + + + +S D +L S
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVS 85
Query: 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
ASDD + ++D + + GH+++V + +P I +GS D +V++WD+ +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 279 QSMTNHTD-----------------------QVWG--------------------VSFRP 295
+++ H+D ++W V F P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 296 LGGRVVSVSDDKSISLYEYS 315
G +++ + D ++ L++YS
Sbjct: 206 NGKYILAATLDNTLKLWDYS 225
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L ++GH V SV SP+G + S+D+ +K+W ++++ H + V++
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVS 98
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 25/308 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+ VA
Sbjct: 24 GHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
+ SAS D ++++DV + + TL+ + V+ F+P+ + L V+G SV++WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD 138
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
T + TL P P V +V ++ DG I S DG ++D +
Sbjct: 139 VKTGMCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHASWVLSVD 250
L L P S V + + + +A+ D + ++D ++GK L T +GH + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT-YTGHKNEKYCIF 244
Query: 251 AS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS--VSD 305
A+ G I +GS D V +W+L + +Q + HTD V + P + S + +
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 306 DKSISLYE 313
DK+I L++
Sbjct: 305 DKTIKLWK 312
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 27/273 (9%)
Query: 49 DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV---FDVDTNASIATLEASPSEV 105
+ L T GH V SV P+G AS+S D +++ +D +I+ + S+V
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 106 -WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
W + L V+ ++K+WD ++ + TL +V
Sbjct: 75 AWSSD-----SNLLVSASDDKTLKIWDVSSGKCLKTL-------------KGHSNYVFCC 116
Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH 224
++P I GS D ++ ++DV L L H PV S V+ D ++ S+S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGL 175
Query: 225 VHMYD-AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN 283
++D A G+ L T + V V SP+G I + D +KLWD + +++ T
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG 235
Query: 284 HTDQVWGV--SFRPLGGR-VVSVSDDKSISLYE 313
H ++ + + +F GG+ +VS S+D + ++
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L+ ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVS 98
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 25/308 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H ++V +V + P E L + S D+ +K+W D + E+T +GH LG+ VA
Sbjct: 24 GHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
+ SAS D ++++DV + + TL+ + V+ F+P+ + L V+G SV++WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD 138
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
T + TL P P V +V ++ DG I S DG ++D +
Sbjct: 139 VKTGMCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTAMSGHASWVLSVD 250
L L P S V + + + +A+ D + ++D ++GK L T +GH + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKNEKYCIF 244
Query: 251 AS---PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS--VSD 305
A+ G I +GS D V +W+L + +Q + HTD V + P + S + +
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 306 DKSISLYE 313
DK+I L++
Sbjct: 305 DKTIKLWK 312
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 27/273 (9%)
Query: 49 DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV---FDVDTNASIATLEASPSEV 105
+ L T GH V SV P+G AS+S D +++ +D +I+ + S+V
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 106 -WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
W + L V+ ++K+WD ++ + TL +V
Sbjct: 75 AWSSD-----SNLLVSASDDKTLKIWDVSSGKCLKTL-------------KGHSNYVFCC 116
Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH 224
++P I GS D ++ ++DV L L H PV S V+ D ++ S+S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGL 175
Query: 225 VHMYD-AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN 283
++D A G+ L T + V V SP+G I + D T+KLWD + +++ T
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 284 HTDQVWGV--SFRPLGGR-VVSVSDDKSISLYE 313
H ++ + + +F GG+ +VS S+D + ++
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%)
Query: 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+L+ ++GH V SV SP+G + + S+D+ +K+W ++++ H + V++
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 294 RPLGGRVVSVSDDKSISLYEYS 315
+VS SDDK++ +++ S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVS 98
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 30/284 (10%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++GS D T+K+W + RT GH GV S + II S S D ++V++ +T
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII--SGSTDRTLKVWNAETG 189
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
I TL S V M K V+G A++++WD T + L
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVL----------- 235
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212
V V + DGRR+ G+ D + V+D LH L+GH V SL + +
Sbjct: 236 --MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 291
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ S S DT + ++D E + + ++GH S ++ + + +G++D TVK+WD+
Sbjct: 292 ---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346
Query: 273 NMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+Q++ H V + F V++ SDD ++ L++
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWD 388
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 125/274 (45%), Gaps = 36/274 (13%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H VW+ ++ R ++++GS D T+K+W + + T GH V + H
Sbjct: 157 GHTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 210
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
++ S S D+ +RV+D++T + L + V +Q+D + V+G VK+WD
Sbjct: 211 RVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWD 265
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
T + TL T++ S +F DG + GS+D +I V+DV
Sbjct: 266 PETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGN 310
Query: 192 FLHHLEGHFMPVRSLVYS-PVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG---HASWVL 247
+H L GH +SL + +L S + D+ V ++D + + + G H S V
Sbjct: 311 CIHTLTGH----QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM 281
+ + + + T S D TVKLWDL ++++
Sbjct: 367 CLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 119/273 (43%), Gaps = 34/273 (12%)
Query: 45 WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE 104
WR +++ + GH V++ I S S D+ ++V+ T + TL
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL----SIPRPEGLKPTDKSSSKKF 160
VW Q + ++G ++K+W+ T I TL S R L
Sbjct: 162 VWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--------- 209
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
+R+ GS D T+ V+D+ + LH L GH VR + Y D R + S +
Sbjct: 210 ----------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGA 256
Query: 221 DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS 280
D V ++D E ++ + + GH + V S+ DG + +GS D ++++WD+ + +
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+T H G+ + +VS + D ++ +++
Sbjct: 315 LTGHQSLTSGMELKD--NILVSGNADSTVKIWD 345
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 41/295 (13%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++G D T+K+W + ++ +R TGH V+ + II S+ DS VRV+DV+T
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSS--DSTVRVWDVNTG 203
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
+ TL V ++F+ + V S+ +WD A+ PT
Sbjct: 204 EMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMAS----------------PT 244
Query: 153 DKSSSKKFVLSVAWSP----DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208
D + + V A D + I S D TI V++ + +F+ L GH + L Y
Sbjct: 245 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 209 SPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVK 268
R++ S S D + ++D E + + + GH V + D I +G+ D +K
Sbjct: 305 R---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIK 359
Query: 269 LWD----LNMRA-----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
+WD L+ RA ++++ H+ +V+ + F ++VS S D +I ++++
Sbjct: 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWDF 412
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 37/261 (14%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
+++TGS D TV++W + ++ T HC V+ + + ++ S D + V+D+ +
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK--DRSIAVWDMAS 242
Query: 92 NASIA---TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148
I L + V + FD K V+ G ++K+W+T+T + TL
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTL------- 292
Query: 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208
+ K+ + + + R + GS D TI ++D+ L LEGH VR + +
Sbjct: 293 ------NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344
Query: 209 SPVDPRVLFSASDDTHVHMYDA---------EGKSLVTAMSGHASWVLSVDASPDGAAIT 259
D + + S + D + ++D G + + H+ V + D I
Sbjct: 345 ---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV 399
Query: 260 TGSSDRTVKLWDLNMRAAMQS 280
+ S D T+ +WD A Q+
Sbjct: 400 SSSHDDTILIWDFLNDPAAQA 420
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
D + + S D + ++D ++GH VL + D I TGSSD TV++WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 272 LNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+N + ++ +H + V + F G +V+ S D+SI++++
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD 239
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP 213
+S + K V + + D ++I G D TI ++D + L GH V L Y D
Sbjct: 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DE 183
Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
RV+ + S D+ V ++D ++ + H VL + + + T S DR++ +WD+
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL--RFNNGMMVTCSKDRSIAVWDM 240
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 62/186 (33%)
Query: 23 VPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS 82
+ + R L+++GS D T++LW
Sbjct: 299 IACLQYRDRLVVSGSSDNTIRLW------------------------------------- 321
Query: 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS 142
D++ A + LE V ++FD K V+G +K+WD L+A L
Sbjct: 322 -----DIECGACLRVLEGHEELVRCIRFDNKRI---VSGAYDGKIKVWD-----LVAALD 368
Query: 143 IPRPEG---LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH 199
P G L+ + S + F L D +I S D TI ++D FL+
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQF----DEFQIVSSSHDDTILIWD-----FLNDPAAQ 419
Query: 200 FMPVRS 205
P RS
Sbjct: 420 AEPPRS 425
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 86.7 bits (213), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 16/266 (6%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGH-----CLGVVSV 66
AHE+ V + +T+ R + T S+D+ VK+W +L T H C +
Sbjct: 661 AHEDEVLCCAF--STDDR--FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNS 716
Query: 67 AAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS 126
+ H ++ A+ S D F++++D++ T+ + V +F P LA + +
Sbjct: 717 SHH---LLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLA-SCSADGT 772
Query: 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD 186
+KLWD + N ++++ + + + V +WS DG RI + + I +FD
Sbjct: 773 LKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLFD 831
Query: 187 VTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245
+ + L + GH ++ +SP + + + S V +++ + +S V GH SW
Sbjct: 832 IHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC-VELWNTDSRSKVADCRGHLSW 890
Query: 246 VLSVDASPDGAAITTGSSDRTVKLWD 271
V V SPDG++ T S D+T++LW+
Sbjct: 891 VHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 65.1 bits (157), Expect = 5e-11, Method: Composition-based stats.
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 30/253 (11%)
Query: 76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS-VKLWDTAT 134
A+ S+D V++++ T + T + +V F L +A G S +KLWD
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA---- 190
T+ T+ + +F SPD + +A S DGT+ ++D T A
Sbjct: 739 KECRNTM-------FGHTNSVNHCRF------SPDDKLLASCSADGTLKLWDATSANERK 785
Query: 191 -----KFLHHLEGHFMPVRSLV----YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-S 240
+F +LE + +V +S R++ +A + + ++D L+ + +
Sbjct: 786 SINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK--IFLFDIHTSGLLGEIHT 843
Query: 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV 300
GH S + D SP S V+LW+ + R+ + H V GV F P G
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 301 VSVSDDKSISLYE 313
++ SDD++I L+E
Sbjct: 904 LTSSDDQTIRLWE 916
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 3/155 (1%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
V +S DG+RIA D T+ VF + L ++ H V +S D R + + S
Sbjct: 624 VYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS-TDDRFIATCS 682
Query: 221 DDTHVHMYDAEGKSLVTAMSGHASWV--LSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
D V ++++ LV H+ V S + TGSSD +KLWDLN +
Sbjct: 683 VDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+M HT+ V F P + S S D ++ L++
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 43/226 (19%)
Query: 87 FDVDTNASIATLEASPSEVWQMQFDP-----------------KGTTLAVAGGGSASVKL 129
F D I++ + + +VW Q D K + L ++ +VK+
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRL-LSWSFDGTVKV 1075
Query: 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR 189
W+ T N K D + VLS S D + + S D T ++
Sbjct: 1076 WNIITGN-------------KEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL 1122
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV--------TAMSG 241
LH L GH VR +S VD +L + D+ + +++ L+ +
Sbjct: 1123 LLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT 1181
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTD 286
H WV + SPDG + S+ +K W++ + Q+ TN T+
Sbjct: 1182 HGGWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGESSQTFYTNGTN 1225
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 59/329 (17%), Positives = 117/329 (35%), Gaps = 68/329 (20%)
Query: 52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD 111
L +TGH + P +A A V +++ D+ + +A S V + F
Sbjct: 838 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFS 897
Query: 112 PKGTTLAVAGGGSASVKLWDTATW------------------NLIATLSIPRPEGLKPTD 153
P G++ + +++LW+T N + L++ L+ +
Sbjct: 898 PDGSSF-LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLIN 956
Query: 154 KSSSKKFVLSVA------WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV 207
+ + L+ A SP + IA G +G I + ++ + H V +
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ 1016
Query: 208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA---------------SW------- 245
++ D + L S+SDD + +++ + + + GH SW
Sbjct: 1017 FT-ADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSFDGTVK 1074
Query: 246 -------------------VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD 286
VLS D S D ++ S+D+T K+W ++ + + H
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNG 1134
Query: 287 QVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
V +F + + D+ I ++ S
Sbjct: 1135 CVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 6/141 (4%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
LL+ S D TVK+W E+ H V+S +S S D +++ D
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
+ L V F T LA G + +++W+ + L+ + EG
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLA-TGDDNGEIRIWNVSNGELLHLCAPLSEEG---- 1178
Query: 153 DKSSSKKFVLSVAWSPDGRRI 173
++ +V + +SPDG+ +
Sbjct: 1179 -AATHGGWVTDLCFSPDGKML 1198
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 57 TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116
+GH V V HP + SAS D+ ++V+D +T TL+ V + FD G
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 164
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
LA + ++KLWD + I T+ V SV+ P+G I
Sbjct: 165 LA-SCSADMTIKLWDFQGFECIRTMH-------------GHDHNVSSVSIMPNGDHIVSA 210
Query: 177 SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236
S D TI +++V + GH VR +V D ++ S S+D V ++ K
Sbjct: 211 SRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 237 TAMSGHASWVLSVDASPD--------------------GAAITTGSSDRTVKLWDLNMRA 276
+ H V + +P+ G + +GS D+T+K+WD++
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
+ ++ H + V GV F G ++S +DDK++ +++Y
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 33/302 (10%)
Query: 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90
+++++ S D T+K+W + ERT GH V ++ SG + AS S D ++++D
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150
I T+ V + P G + V+ ++K+W+ T + T +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFT-------- 231
Query: 151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 210
+++V V + DG IA S D T+ V+ V + L H V + ++P
Sbjct: 232 -----GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 211 VDPR-------------------VLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
L S S D + M+D + + GH +WV V
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311
G I + + D+T+++WD + M+++ H V + F VV+ S D+++ +
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 312 YE 313
+E
Sbjct: 407 WE 408
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG 255
L GH PV +++ PV V+ SAS+D + ++D E + GH V + G
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 256 AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+ + S+D T+KLWD +++M H V VS P G +VS S DK+I ++E
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI--------ACGSMDGTISVFDVTRAKFLH 194
IPRP +K+ LS SP R I S D TI V+D F
Sbjct: 95 IPRP----------PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 144
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
L+GH V+ + + ++L S S D + ++D +G + M GH V SV P+
Sbjct: 145 TLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
G I + S D+T+K+W++ +++ T H + V V G + S S+D+++ ++
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 238 AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG 297
A+SGH S V V P + + + S D T+K+WD +++ HTD V +SF G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 298 GRVVSVSDDKSISLYEYS 315
+ S S D +I L+++
Sbjct: 163 KLLASCSADMTIKLWDFQ 180
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 31/231 (13%)
Query: 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-----IPRPEGLKPTDKSSS 157
S V ++F G LA G + + +++ + +L+A LS PE L + SS
Sbjct: 65 SVVCCVKFSNDGEYLAT--GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
++ SV +SPDG+ +A G+ D I ++D+ K + L+GH + SL Y P + L
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LV 181
Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD-------ASP-DGAAITTGSSDRTVKL 269
S S D V ++D +G S LS++ SP DG I GS DR V++
Sbjct: 182 SGSGDRTVRIWDLR--------TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 270 WD-------LNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
WD + + +S T H D V+ V F G VVS S D+S+ L+
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 114/253 (45%), Gaps = 38/253 (15%)
Query: 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
L + SV P G A+ + D +R++D++ + L+ +++ + + P G L V+
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VS 182
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMD 179
G G +V++WD T TLSI + V +VA SP DG+ IA GS+D
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSI--------------EDGVTTVAVSPGDGKYIAAGSLD 228
Query: 180 GTISVFDVTRAKFLHHLE-------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE- 231
+ V+D + L+ GH V S+V++ D + + S S D V +++ +
Sbjct: 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 287
Query: 232 ------------GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279
G VT + GH +VLSV + + I +GS DR V WD +
Sbjct: 288 ANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346
Query: 280 SMTNHTDQVWGVS 292
+ H + V V+
Sbjct: 347 MLQGHRNSVISVA 359
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 26/257 (10%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
L TG+ D +++W ++ ++ GH + S+ PSG S S D VR++D+ T
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
TL V + P AG +V++WD+ T L+ L G
Sbjct: 197 GQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG--- 252
Query: 152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE------------GH 199
+ K V SV ++ DG+ + GS+D ++ ++++ A + GH
Sbjct: 253 ---TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 200 FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS------P 253
V S+ + D +L S S D V +D + + + + GH + V+SV + P
Sbjct: 310 KDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368
Query: 254 DGAAITTGSSDRTVKLW 270
+ TGS D ++W
Sbjct: 369 EYNVFATGSGDCKARIW 385
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 63/195 (32%), Gaps = 51/195 (26%)
Query: 19 AVTWVPATETRPALLLTGSLDETVKLWRPD-DMQLER------TNTGHCLGVVSVAAHPS 71
VT V + + GSLD V++W + +ER + TGH V SV
Sbjct: 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131
G S SLD SVKLW+
Sbjct: 268 GQSVVSGSLDR-------------------------------------------SVKLWN 284
Query: 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
N + P G K FVLSVA + + I GS D + +D
Sbjct: 285 LQNANNKSDSKTPN-SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 192 FLHHLEGHFMPVRSL 206
L L+GH V S+
Sbjct: 344 PLLMLQGHRNSVISV 358
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 23/219 (10%)
Query: 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTA--TWNLIATLSIPRPEGLKPTDKSSSKKF 160
S W + ++P GT LA + GG +++W T +W + LS EG + T
Sbjct: 17 SRCWFLAWNPAGTLLA-SCGGDRRIRIWGTEGDSWICKSVLS----EGHQRT-------- 63
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDPRVLFS 218
V VAWSP G +A S D T ++ + F + LEGH V+S+ ++P +L +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLAT 122
Query: 219 ASDDTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW--DLN 273
S D V +++ + + V+ ++ H V V P + + S D TVKL+ + +
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Query: 274 MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
++ H VW ++F P G R+ S SDD+++ ++
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 90/232 (38%), Gaps = 55/232 (23%)
Query: 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWR--PDDMQLERTNTGHCLGVVS 65
SV N+H + V V W P+ E LL + S D+TVKL+R DD T GH V S
Sbjct: 144 SVLNSHTQDVKHVVWHPSQE----LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 66 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
+A PSG AS S D VR++ Q+ P G VA GS
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIW--------------------RQYLP-GNEQGVACSGS- 237
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
+W I TLS + + +AW +A D I VF
Sbjct: 238 ------DPSWKCICTLS------------GFHSRTIYDIAWCQLTGALATACGDDAIRVF 279
Query: 186 ------DVTRAKF---LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
D + F H + H V + ++P +P +L S SDD V +
Sbjct: 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 27/253 (10%)
Query: 34 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93
++ S D +++LW + Q + GH V+SVA P S D+ +RV++V
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 94 SIATLEASPSEVW--QMQFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150
+ TL W ++F P + V+GG VK+WD AT L+
Sbjct: 143 -MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV------------ 189
Query: 151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 210
TD +V SV SPDG A DG ++D+T+ + L + P+ + +SP
Sbjct: 190 -TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG-APINQICFSP 247
Query: 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMS----GHASWV---LSVDASPDGAAITTGSS 263
R A+ + + ++D E K ++ ++ G V +S+ S DG+ + +G +
Sbjct: 248 --NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYT 305
Query: 264 DRTVKLWDLNMRA 276
D +++W ++ A
Sbjct: 306 DNVIRVWGVSENA 318
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSP-VDPRV 215
K VLSVA+SPD R+I G D + V++V + + +H L H V + +SP +D V
Sbjct: 110 KDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 216 LFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275
+ S D V ++D LVT + GH ++V SV SPDG+ + D +LWDL
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 276 AAMQSM 281
A+ M
Sbjct: 229 EALSEM 234
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
FV VA S +G S D ++ ++++ + + GH V S+ +SP D R + S
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSG 127
Query: 220 SDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRA 276
D + +++ +G+ + T G H WV V SP D I +G D VK+WDL
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+ + HT+ V V+ P G S D L++
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 19/175 (10%)
Query: 22 WVPATETRPAL----LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAAS 77
WV P+L +++G D VK+W +L GH V SV P G + AS
Sbjct: 154 WVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137
+ D R++D+ +++ + A+ + + Q+ F P + A ++++D ++
Sbjct: 214 SDKDGVARLWDLTKGEALSEM-AAGAPINQICFSPNRYWMCAA--TEKGIRIFDLENKDI 270
Query: 138 IATLSIPRPEGLKPTDKSSSKKFV---LSVAWSPDGRRIACGSMDGTISVFDVTR 189
I L+ P +G SKK V +S+AWS DG + G D I V+ V+
Sbjct: 271 IVELA-PEHQG--------SKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 138 IATLSIPR-PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 196
+ +L+ P+ PE +S K +LS +PD C + + D L
Sbjct: 16 VTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSEC-----SYGLPD-------RRL 63
Query: 197 EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA 256
EGH V + S + SAS D + +++ + GH VLSV SPD
Sbjct: 64 EGHSAFVSDVALSN-NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 257 AITTGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRP 295
I +G D +++W++ M +++ HTD V V F P
Sbjct: 123 QIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSP 162
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG 298
+ GH+++V V S +G + S D +++LW+L HT V V+F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 299 RVVSVSDDKSISLYE 313
++VS D ++ ++
Sbjct: 123 QIVSGGRDNALRVWN 137
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
TL ++++ M + + L V+ + +WD+ T N + + + +SS
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
+V++ A++P G +ACG +D S++++ TR + L GH + + +D
Sbjct: 99 ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ ++S DT ++D E T +GH V+S+ +PD +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
Q+ T H + + F P G + SDD + L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 21 TWVPATETRPA--LLLTGSLDETVKLW----RPDDMQLERTNTGHCLGVVSVAAHPSGII 74
+WV P+ + G LD ++ R ++++ R GH G +S
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQ 156
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
++S D+ ++D++T T +V + P T L V+G AS KLWD
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDV-- 213
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL- 193
EG+ + + + ++ + P+G A GS D T +FD+ + L
Sbjct: 214 -----------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 194 -HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252
+ + + S+ +S R+L + DD + +++DA ++GH + V + +
Sbjct: 263 TYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 253 PDGAAITTGSSDRTVKLWD 271
DG A+ TGS D +K+W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 20/269 (7%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
M+ RT GH + ++ + SAS D + ++D T + + S V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG-LKPTDKSSSKKFVLSVAWSP 168
+ P G +A G N+ + ++ EG ++ + + + LS
Sbjct: 105 YAPSGNYVACGGLD------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
D +I S D T +++D+ + GH V SL +P D R+ S + D ++
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQ 287
D +GH S + ++ P+G A TGS D T +L+DL RA + MT +H +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNI 269
Query: 288 VWG---VSFRPLGGRVVSVSDDKSISLYE 313
+ G VSF G +++ DD + ++++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
TL ++++ M + + L V+ + +WD+ T N + + + +SS
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
+V++ A++P G +ACG +D S++++ TR + L GH + + +D
Sbjct: 99 ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ ++S DT ++D E T +GH V+S+ +PD +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
Q+ T H + + F P G + SDD + L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 21 TWVPATETRPA--LLLTGSLDETVKLW----RPDDMQLERTNTGHCLGVVSVAAHPSGII 74
+WV P+ + G LD ++ R ++++ R GH G +S
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQ 156
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
++S D+ ++D++T T +V + P T L V+G AS KLWD
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDV-- 213
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL- 193
EG+ + + + ++ + P+G A GS D T +FD+ + L
Sbjct: 214 -----------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 194 -HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252
+ + + S+ +S R+L + DD + +++DA ++GH + V + +
Sbjct: 263 TYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 253 PDGAAITTGSSDRTVKLWD 271
DG A+ TGS D +K+W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 20/269 (7%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
M+ RT GH + ++ + SAS D + ++D T + + S V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG-LKPTDKSSSKKFVLSVAWSP 168
+ P G +A G N+ + ++ EG ++ + + + LS
Sbjct: 105 YAPSGNYVACGGLD------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
D +I S D T +++D+ + GH V SL +P D R+ S + D ++
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQ 287
D +GH S + ++ P+G A TGS D T +L+DL RA + MT +H +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNI 269
Query: 288 VWG---VSFRPLGGRVVSVSDDKSISLYE 313
+ G VSF G +++ DD + ++++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
TL ++++ M + + L V+ + +WD+ T N + + + +SS
Sbjct: 61 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSS 109
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
+V++ A++P G +ACG +D S++++ TR + L GH + + +D
Sbjct: 110 ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 164
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ ++S DT ++D E T +GH V+S+ +PD +G+ D + KLWD+
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
Q+ T H + + F P G + SDD + L++
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 21 TWVPATETRPA--LLLTGSLDETVKLW----RPDDMQLERTNTGHCLGVVSVAAHPSGII 74
+WV P+ + G LD ++ R ++++ R GH G +S
Sbjct: 109 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQ 167
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
++S D+ ++D++T T +V + P T L V+G AS KLWD
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDV-- 224
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL- 193
EG+ + + + ++ + P+G A GS D T +FD+ + L
Sbjct: 225 -----------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 273
Query: 194 -HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252
+ + + S+ +S R+L + DD + +++DA ++GH + V + +
Sbjct: 274 TYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332
Query: 253 PDGAAITTGSSDRTVKLWD 271
DG A+ TGS D +K+W+
Sbjct: 333 DDGMAVATGSWDSFLKIWN 351
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 20/269 (7%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
M+ RT GH + ++ + SAS D + ++D T + + S V
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 115
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG-LKPTDKSSSKKFVLSVAWSP 168
+ P G +A G N+ + ++ EG ++ + + + LS
Sbjct: 116 YAPSGNYVACGGLD------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
D +I S D T +++D+ + GH V SL +P D R+ S + D ++
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 222
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQ 287
D +GH S + ++ P+G A TGS D T +L+DL RA + MT +H +
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNI 280
Query: 288 VWG---VSFRPLGGRVVSVSDDKSISLYE 313
+ G VSF G +++ DD + ++++
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
TL ++++ M + + L ++ + +WD+ T N + + + +SS
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
+V++ A++P G +ACG +D S++++ TR + L GH + + +D
Sbjct: 99 ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ ++S DT ++D E T +GH V+S+ +PD +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
Q+ T H + + F P G + SDD + L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 21 TWVPATETRPA--LLLTGSLDETVKLW----RPDDMQLERTNTGHCLGVVSVAAHPSGII 74
+WV P+ + G LD ++ R ++++ R GH G +S
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQ 156
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
++S D+ ++D++T T +V + P T L V+G AS KLWD
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDV-- 213
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL- 193
EG+ + + + ++ + P+G A GS D T +FD+ + L
Sbjct: 214 -----------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 194 -HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252
+ + + S+ +S R+L + DD + +++DA ++GH + V + +
Sbjct: 263 TYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 253 PDGAAITTGSSDRTVKLWD 271
DG A+ TGS D +K+W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 20/269 (7%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
M+ RT GH + ++ + SAS D + ++D T + + S V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG-LKPTDKSSSKKFVLSVAWSP 168
+ P G +A G N+ + ++ EG ++ + + + LS
Sbjct: 105 YAPSGNYVACGGLD------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
D +I S D T +++D+ + GH V SL +P D R+ S + D ++
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQ 287
D +GH S + ++ P+G A TGS D T +L+DL RA + MT +H +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNI 269
Query: 288 VWG---VSFRPLGGRVVSVSDDKSISLYE 313
+ G VSF G +++ DD + ++++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
TL ++++ M + + L ++ + +WD+ T N + + + +SS
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL----------RSS 98
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TR---AKFLHHLEGHFMPVRSLVYSPVD 212
+V++ A++P G +ACG +D S++++ TR + L GH + + +D
Sbjct: 99 ---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LD 153
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ ++S DT ++D E T +GH V+S+ +PD +G+ D + KLWD+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
Q+ T H + + F P G + SDD + L++
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 21 TWVPATETRPA--LLLTGSLDETVKLW----RPDDMQLERTNTGHCLGVVSVAAHPSGII 74
+WV P+ + G LD ++ R ++++ R GH G +S
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQ 156
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
++S D+ ++D++T T +V + P T L V+G AS KLWD
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDV-- 213
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL- 193
EG+ + + + ++ + P+G A GS D T +FD+ + L
Sbjct: 214 -----------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 194 -HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252
+ + + S+ +S R+L + DD + +++DA ++GH + V + +
Sbjct: 263 TYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 253 PDGAAITTGSSDRTVKLWD 271
DG A+ TGS D +K+W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 20/269 (7%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
M+ RT GH + ++ + SAS D + ++D T + + S V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG-LKPTDKSSSKKFVLSVAWSP 168
+ P G +A G N+ + ++ EG ++ + + + LS
Sbjct: 105 YAPSGNYVACGGLD------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
D +I S D T +++D+ + GH V SL +P D R+ S + D ++
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQ 287
D +GH S + ++ P+G A TGS D T +L+DL RA + MT +H +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNI 269
Query: 288 VWG---VSFRPLGGRVVSVSDDKSISLYE 313
+ G VSF G +++ DD + ++++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156
TL+ ++V M + K V+ V +WD+ T N +++P
Sbjct: 59 TLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT---------- 107
Query: 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------HLEGHFMPVRSLVYSP 210
+V++ A++P G IACG +D SV+ +T K + + H + + ++
Sbjct: 108 ---WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164
Query: 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVK 268
D ++L +AS D ++D E L+ + GH + VL +D +P G +G D+
Sbjct: 165 SDMQIL-TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 269 LWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+WD+ +Q+ H V V + P G S SDD + LY+
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 43/271 (15%)
Query: 20 VTWVPATETRP--ALLLTGSLDETVKLW-----RPDDMQLERTNTGHCLGVVSVAAHPSG 72
TWV A P + G LD ++ + ++M ++ SVA H +
Sbjct: 106 CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKK---------SVAMHTNY 156
Query: 73 IIAAS----------ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT-TLAVAG 121
+ A S AS D ++DV++ + + ++V + P T V+G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181
G +WD + + + V SV + P G A GS D T
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESD-------------VNSVRYYPSGDAFASGSDDAT 263
Query: 182 ISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239
++D+ R ++ E S+ +S + R+LF+ +D ++++D S V+ +
Sbjct: 264 CRLYDLRADREVAIYSKESIIFGASSVDFS-LSGRLLFAGYNDYTINVWDVLKGSRVSIL 322
Query: 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLW 270
GH + V ++ SPDG A +GS D T+++W
Sbjct: 323 FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 13/226 (5%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
M+ RT GH V+ + S+S D V V+D T + + V
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS--KKFVLSVAWS 167
+ P G +A G + + L+ + E + KS + ++ + +++
Sbjct: 114 YAPSGCAIACGGLDNKCS----------VYPLTFDKNENMAAKKKSVAMHTNYLSACSFT 163
Query: 168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF-SASDDTHVH 226
+I S DGT +++DV + L GH V L +P + F S D
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 227 MYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
++D V A H S V SV P G A +GS D T +L+DL
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 116/310 (37%), Gaps = 27/310 (8%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H V + W +++ S D V +W E T C V++ A PS
Sbjct: 62 GHGNKVLCMDWCKDKRR----IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 72 GIIAASASLDSFVRVFDV--DTNASIATLEAS----PSEVWQMQFDPKGTTLAVAGGGSA 125
G A LD+ V+ + D N ++A + S + + F + A G
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-DG 176
Query: 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
+ LWD + L+ + + L L +A S G G D V+
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVL-----------CLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245
D+ + + E H V S+ Y P S SDD +YD V A+ S
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREV-AIYSKESI 283
Query: 246 VL---SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS 302
+ SVD S G + G +D T+ +WD+ + + + H ++V + P G S
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 303 VSDDKSISLY 312
S D ++ ++
Sbjct: 344 GSWDHTLRVW 353
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-TATWN 136
S D +RVF+ +T + EA P + + P ++G +VKLW+ W
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWA 131
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHH 195
L T EG + FV+ VA++P D A G +D T+ V+ + ++
Sbjct: 132 LEQTF-----EG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 196 LE-GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP 253
L G V + Y P+ D + +ASDD + ++D + KS V + GH S V P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
I +GS D T+K+W+ + +++ ++ W ++ P G +
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
+ +++T + V + HP+ + V +++ +T + +++ + + V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
F + + V G +++++ T G K D + ++ S+A P
Sbjct: 63 FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
+ GS D T+ +++ L EGH V + ++P DP S D V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
+ T +G V VD P D + T S D T+K+WD ++ + ++ H
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
V F P ++S S+D ++ ++ S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGV 63
L+ HE V V + P P+ +G LD TVK+W T TG GV
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKD---PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 64 VSVAAH--PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAG 121
V + P +AS D ++++D T + +ATLE S V F P + ++G
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISG 246
Query: 122 GGSASVKLWDTATWNLIATLSI 143
++K+W+++T+ + TL++
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 28 TRPALLLTGSLDETVKLWR-PDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVR 85
T+P +L+GS D TVKLW ++ LE+T GH V+ VA +P AS LD V+
Sbjct: 108 TKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 86 VFDVDTNASIATLEASPSE-VWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
V+ + + TL V + + P + ++K+WD T + +ATL
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-- 224
Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
EG S+ F + + P I GS DGT+ +++ + K
Sbjct: 225 ---EG-----HMSNVSFAV---FHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
E V V + P + +P ++T S D T+K+W T GH V HP+
Sbjct: 182 GQERGVNYVDYYPLPD-KP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
I S S D +++++ T TL W + P G +A G
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-TATWN 136
S D +RVF+ +T + EA P + + P ++G +VKLW+ W
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWA 131
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHH 195
L T EG + FV+ VA++P D A G +D T+ V+ + ++
Sbjct: 132 LEQTF-----EG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 196 LE-GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP 253
L G V + Y P+ D + +ASDD + ++D + KS V + GH S V P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
I +GS D T+K+W+ + +++ ++ W ++ P G +
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
+ +++T + V + HP+ + V +++ +T + +++ + + V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
F + + V G +++++ T G K D + ++ S+A P
Sbjct: 63 FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
+ GS D T+ +++ L EGH V + ++P DP S D V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
+ T +G V VD P D + T S D T+K+WD ++ + ++ H
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
V F P ++S S+D ++ ++ S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGV 63
L+ HE V V + P P+ +G LD TVK+W T TG GV
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKD---PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 64 VSVAAH--PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAG 121
V + P +AS D ++++D T + +ATLE S V F P + ++G
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISG 246
Query: 122 GGSASVKLWDTATWNLIATLSI 143
++K+W+++T+ + TL++
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 28 TRPALLLTGSLDETVKLWR-PDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVR 85
T+P +L+GS D TVKLW ++ LE+T GH V+ VA +P AS LD V+
Sbjct: 108 TKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 86 VFDVDTNASIATLEASPSE-VWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
V+ + + TL V + + P + ++K+WD T + +ATL
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-- 224
Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
EG S+ F + + P I GS DGT+ +++ + K
Sbjct: 225 ---EG-----HMSNVSFAV---FHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
E V V + P + +P ++T S D T+K+W T GH V HP+
Sbjct: 182 GQERGVNYVDYYPLPD-KP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
I S S D +++++ T TL W + P G +A G
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-TATWN 136
S D +RVF+ +T + EA P + + P ++G +VKLW+ W
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWA 131
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHH 195
L T EG + FV+ VA++P D A G +D T+ V+ + ++
Sbjct: 132 LEQTF-----EG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 196 LE-GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP 253
L G V + Y P+ D + +ASDD + ++D + KS V + GH S V P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
I +GS D T+K+W+ + +++ ++ W ++ P G +
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
+ +++T + V + HP+ + V +++ +T + +++ + + V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
F + + V G +++++ T G K D + ++ S+A P
Sbjct: 63 FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
+ GS D T+ +++ L EGH V + ++P DP S D V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
+ T +G V VD P D + T S D T+K+WD ++ + ++ H
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
V F P ++S S+D ++ ++ S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVV 64
L+ HE V V + P P+ +G LD TVK+W T TG GV
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKD---PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 65 SVAAH--PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
V + P +AS D ++++D T + +ATLE S V F P + ++G
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGS 247
Query: 123 GSASVKLWDTATWNLIATLSI 143
++K+W+++T+ + TL++
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNV 268
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
E V V + P + +P ++T S D T+K+W T GH V HP+
Sbjct: 182 GQERGVNYVDYYPLPD-KP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
I S S D +++++ T TL W + P G +A G
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
++++GS D T+K+W ++E+T +A HP+G AS F F V
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS--GFDNGFTV-- 297
Query: 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
S+ E + + DP G L +GG +A+ TA + P L+
Sbjct: 298 -LSLGNDEPT------LSLDPVG-KLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQT 349
Query: 152 TDKSSSKKFVLSVAWSPDGRRI 173
+ S F S+A SP+GR +
Sbjct: 350 KELGSVDVFPQSLAHSPNGRFV 371
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-TATWNLIA 139
D +RVF+ +T + EA P + + P ++G +VKLW+ W L
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLE- 197
T EG + FV+ VA++P D A G +D T+ V+ + ++ L
Sbjct: 135 TF-----EG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 198 GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA 256
G V + Y P+ D + +ASDD + ++D + KS V + GH S V P
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 257 AITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGR 299
I +GS D T+K+W+ + +++ ++ W ++ P G +
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 50 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109
+ +++T + V + HP+ + V +++ +T + +++ + + V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
F + + V G +++++ T G K D + ++ S+A P
Sbjct: 63 FIARKNWIIV-GSDDFRIRVFNYNT-------------GEKVVDFEAHPDYIRSIAVHPT 108
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228
+ GS D T+ +++ L EGH V + ++P DP S D V ++
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 229 D-AEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
+ T +G V VD P D + T S D T+K+WD ++ + ++ H
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
V F P ++S S+D ++ ++ S
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVV 64
L+ HE V V + P P+ +G LD TVK+W T TG GV
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKD---PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 65 SVAAH--PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
V + P +AS D ++++D T + +ATLE S V F P + ++G
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGS 247
Query: 123 GSASVKLWDTATWNLIATLSI 143
++K+W+++T+ + TL++
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNV 268
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
E V V + P + +P ++T S D T+K+W T GH V HP+
Sbjct: 182 GQERGVNYVDYYPLPD-KP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
I S S D +++++ T TL W + P G +A G
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
++++GS D T+K+W ++E+T +A HP+G AS F F V
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS--GFDNGFTV-- 297
Query: 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
S+ E + + DP G L +GG +A+ TA + P L+
Sbjct: 298 -LSLGNDEPT------LSLDPVG-KLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQT 349
Query: 152 TDKSSSKKFVLSVAWSPDGRRI 173
+ S F S+A SP+GR +
Sbjct: 350 KELGSVDVFPQSLAHSPNGRFV 371
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 116/312 (37%), Gaps = 57/312 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS 71
H V+++ W P +++ S D + +W Q HC V+ A P+
Sbjct: 64 GHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 72 GIIAASASLDSFVRVF------DVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGS 124
G A LDS +F D D N ++ L Q+ P T + G G
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 125 ASVKLWDTATWNLIATLSIPRPEG-------------------------------LKPTD 153
+ LWD T I+ P G L+ T
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 154 KS-----SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------HLEGHFMP 202
++ + + SV + PDG+R GS DGT +FD+ L + +P
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV----TAMSGHASWVLSVDASPDGAAI 258
+ + V + R+LF+ + +++D +V T + H + + S DG+A+
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 259 TTGSSDRTVKLW 270
TGS D+ +K+W
Sbjct: 360 CTGSWDKNLKIW 371
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVT-------RAKFLHHLEGHFMPVRSLVYSPVDP 213
V+ A++P+G+ +ACG +D S+F+++ L GH S Y P
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAM-----SGHASWVLSVD-ASPDGAAITTGSSDRTV 267
L + S D ++D ++ SGH + VLS+ S + +GS D TV
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 268 KLWDLNMRA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+LWDL + + A+++ H + V F P G R + SDD + L++
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 18/252 (7%)
Query: 45 WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE 104
+ P D+ RT GH V S+ P SAS D + V++ T+ ++
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW 110
Query: 105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK--SSSKKFVL 162
V + F P G ++A G SA + +NL S +G P + + K +
Sbjct: 111 VMECAFAPNGQSVACGGLDSA------CSIFNLS---SQADRDGNMPVSRVLTGHKGYAS 161
Query: 163 SVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHL-----EGHFMPVRSLVYSPVDPRVL 216
S + PD R+ GS D T ++DVT + + GH V SL + ++ +
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 217 FSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275
S S DT V ++D S V GH + SV PDG TGS D T +L+D+
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 276 AAMQSMTNHTDQ 287
+Q D+
Sbjct: 282 HQLQVYNREPDR 293
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 222 DTHVHMY-DAEGKSLVT----------AMSGHASWVLSVDASPDGAAITTGSSDRTVKLW 270
DT V Y A+G++ V+ + GH+ V S+D +P+ I + S D + +W
Sbjct: 34 DTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
Query: 271 DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+ ++ H V +F P G V D + S++ S
Sbjct: 94 NALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 18/187 (9%)
Query: 116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT---DKSSSKKFVLSVAWSPDGRR 172
T V GG VK+WD I P P D + ++ S PDG
Sbjct: 63 TRHVYTGGKGCVKVWD-----------ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 173 IACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
+ G T+S++D+ + L +L SP D +V FS D ++ ++D
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDL 170
Query: 231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG 290
++LV GH +D S DG + TG D TV+ WDL +Q + T Q++
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFS 229
Query: 291 VSFRPLG 297
+ + P G
Sbjct: 230 LGYCPTG 236
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 20/211 (9%)
Query: 63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
++A P + S D + V+D+ + + + GT L GG
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-GG 202
Query: 123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182
+V+ WD + L+ D +S + S+ + P G +A G +
Sbjct: 203 LDNTVRSWD-----------LREGRQLQQHDFTSQ---IFSLGYCPTGEWLAVGMESSNV 248
Query: 183 SVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
V V + K+ HL H V SL ++ + + D+ G S+ S
Sbjct: 249 EVLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSK 304
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+S VLS D S D I TGS D+ ++++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 34 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93
L+GS D T++LW R GH V+SVA S S D +++++
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 94 SIATLEASPSE-VWQMQFDPKGTT-LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
+ S SE V ++F P + + V+ G VK+W+ A L
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-------------K 185
Query: 152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
T+ ++ +V SPDG A G DG ++D+ K L+ L+G + + +L +SP
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP- 243
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLV---------TAMSGHASWVLSVDASPDGAAITTGS 262
R A+ + ++D EGK +V T+ S+ S DG + G
Sbjct: 244 -NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 302
Query: 263 SDRTVKLWDLNM 274
+D V++W + +
Sbjct: 303 TDNLVRVWQVTI 314
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
A++G +++LWD T G K VLSVA+S D R+I G
Sbjct: 77 FALSGSWDGTLRLWDLTT-------------GTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 177 SMDGTISVFD-VTRAKFLHHLEGHFMPVRSLVYSPVDPR-VLFSASDDTHVHMYDAEGKS 234
S D TI +++ + K+ E H V + +SP ++ S D V +++
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
L T GH ++ +V SPDG+ +G D LWDLN
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY----DAEGKSL-VTAMSGHASWVLSVD 250
L+GH V + +P P ++ SAS D + M+ D + A+ GH+ +V V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
S DG +GS D T++LWDL + HT V V+F ++VS S DK+I
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 311 LYE 313
L+
Sbjct: 131 LWN 133
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
FV V S DG+ GS DGT+ ++D+T GH V S+ +S D R + S
Sbjct: 65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 123
Query: 220 SDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRA 276
S D + +++ G T H+ WV V SP+ + I + D+ VK+W+L
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+ HT + V+ P G S D L++ +
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH 69
+ +H E V V + P + P ++ G D+ VK+W + +L+ + GH + +V
Sbjct: 144 DESHSEWVSCVRFSP-NSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS 201
Query: 70 PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
P G + AS D ++D++ + TL+ + + F P L A G S+K+
Sbjct: 202 PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATG--PSIKI 258
Query: 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188
WD ++ L + E + + K+ + S+AWS DG+ + G D + V+ VT
Sbjct: 259 WDLEGKIIVDEL---KQEVISTSSKAEPPQ-CTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 173 IACGSMDGTISVFDVTRAKFLHH-----LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227
I S D TI ++ +TR + + L GH V +V S D + S S D + +
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 89
Query: 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD-LNMRAAMQSMTNHTD 286
+D + GH VLSV S D I +GS D+T+KLW+ L + +H++
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 149
Query: 287 QVWGVSFRPLGGR--VVSVSDDKSISLYE 313
V V F P +VS DK + ++
Sbjct: 150 WVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 34 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93
L+GS D T++LW R GH V+SVA S S D +++++
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 94 SIATLEASPSE-VWQMQFDPKGTT-LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151
+ S SE V ++F P + + V+ G VK+W+ A L
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-------------K 208
Query: 152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
T+ ++ +V SPDG A G DG ++D+ K L+ L+G + + +L +SP
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP- 266
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLV---------TAMSGHASWVLSVDASPDGAAITTGS 262
R A+ + ++D EGK +V T+ S+ S DG + G
Sbjct: 267 -NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 263 SDRTVKLWDLNM 274
+D V++W + +
Sbjct: 326 TDNLVRVWQVTI 337
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
A++G +++LWD T G K VLSVA+S D R+I G
Sbjct: 100 FALSGSWDGTLRLWDLTT-------------GTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 177 SMDGTISVFD-VTRAKFLHHLEGHFMPVRSLVYSPVDPR-VLFSASDDTHVHMYDAEGKS 234
S D TI +++ + K+ E H V + +SP ++ S D V +++
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
L T GH ++ +V SPDG+ +G D LWDLN
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY----DAEGKSL-VTAMSGHASWVLSVD 250
L+GH V + +P P ++ SAS D + M+ D + A+ GH+ +V V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
S DG +GS D T++LWDL + HT V V+F ++VS S DK+I
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 311 LYE 313
L+
Sbjct: 154 LWN 156
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
FV V S DG+ GS DGT+ ++D+T GH V S+ +S D R + S
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 146
Query: 220 SDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRA 276
S D + +++ G T H+ WV V SP+ + I + D+ VK+W+L
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+ HT + V+ P G S D L++ +
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH 69
+ +H E V V + P + P ++ G D+ VK+W + +L+ + GH + +V
Sbjct: 167 DESHSEWVSCVRFSP-NSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS 224
Query: 70 PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
P G + AS D ++D++ + TL+ + + F P L A G S+K+
Sbjct: 225 PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATG--PSIKI 281
Query: 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188
WD ++ L + E + + K+ + S+AWS DG+ + G D + V+ VT
Sbjct: 282 WDLEGKIIVDEL---KQEVISTSSKAEPPQ-CTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 173 IACGSMDGTISVFDVTRAKFLHH-----LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227
I S D TI ++ +TR + + L GH V +V S D + S S D + +
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 112
Query: 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD-LNMRAAMQSMTNHTD 286
+D + GH VLSV S D I +GS D+T+KLW+ L + +H++
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172
Query: 287 QVWGVSFRPLGGR--VVSVSDDKSISLYE 313
V V F P +VS DK + ++
Sbjct: 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 13/178 (7%)
Query: 22 WVPATETRPALL----LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAAS 77
WV P L ++ S D+TVK+W + +L T GH V +VA P G + AS
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137
D V ++D+ + +LEA+ S + + F P L A +K+WD + ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSI 635
Query: 138 IATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 189
+ L + + D S ++K+ V+ S+ WS DG + G DG I V+ + R
Sbjct: 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 6/159 (3%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
FV V S DG+ GS DG + ++D+ GH V S+ +S +D R + SA
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSA 490
Query: 220 SDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPD--GAAITTGSSDRTVKLWDLNM 274
S D + +++ G+ T GH WV V SP+ I + S D+TVK+W+L+
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
++ HT V V+ P G S D + L++
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 73/329 (22%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPA-LLLTGSLDETVKLWR--PDDMQL---ERTNTGH 59
LK AH + V A+ AT A ++++ S D+++ LW+ DD +R TGH
Sbjct: 374 LKGTMRAHTDMVTAI----ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429
Query: 60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAV 119
V V G A S S D +R++D+ S +V + F + V
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-V 488
Query: 120 AGGGSASVKLWDT---------------ATWNLIATLSIPRPEGLKPTDKSSS------- 157
+ ++KLW+T W S P L+PT S+S
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS---PNTLQPTIVSASWDKTVKV 545
Query: 158 ---------------KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMP 202
+V +VA SPDG A G DG + ++D+ K L+ LE + +
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV- 604
Query: 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-------------SGHAS----- 244
+ +L +SP R A+ + + ++D E KS+V + SG A+
Sbjct: 605 IHALCFSP--NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662
Query: 245 -WVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ S++ S DG+ + +G +D +++W +
Sbjct: 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176
A++G ++LWD L A +S R G K VLSVA+S D R+I
Sbjct: 444 FALSGSWDGELRLWD-----LAAGVSTRRFVG--------HTKDVLSVAFSLDNRQIVSA 490
Query: 177 SMDGTISVFDV---TRAKFLHHLEGHFMPVRSLVYSP--VDPRVLFSASDDTHVHMYDAE 231
S D TI +++ + EGH V + +SP + P ++ SAS D V +++
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTVKVWNLS 549
Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM 281
L + ++GH +V +V SPDG+ +G D V LWDL + S+
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 207 VYSPVD-PRVLFSASDDTHVHMYD--AEGKSLVTA---MSGHASWVLSVDASPDGAAITT 260
+ +P+D ++ SAS D + ++ + K+ A ++GH+ +V V S DG +
Sbjct: 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALS 447
Query: 261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
GS D ++LWDL + + HT V V+F ++VS S D++I L+
Sbjct: 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 173 IACGSMDGTISVFDVTRAKFLH-----HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227
I S D +I ++ +T+ + L GH V +V S D + S S D + +
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL 456
Query: 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM---QSMTNH 284
+D GH VLSV S D I + S DRT+KLW+ + H
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516
Query: 285 TDQVWGVSFRP--LGGRVVSVSDDKSISLYEYS 315
D V V F P L +VS S DK++ ++ S
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 71/286 (24%), Positives = 112/286 (39%), Gaps = 54/286 (18%)
Query: 76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135
AS D ++VF +T + ++A EV F + +A VK+WD+AT
Sbjct: 631 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-DKKVKIWDSATG 689
Query: 136 NLIATLS--IPRPEGLKPTDKSS-------SKKFVLSV---------------------- 164
L+ T + T+KS+ S F L +
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP----RVL---- 216
+SPD +A S DGT+ ++DV A E + V+ S DP V+
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSAN-----ERKSINVKRFFLSSEDPPEDVEVIVKCC 804
Query: 217 -FSASDD-------THVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTV 267
+SA D V ++D L+ + +GH S + D SP S V
Sbjct: 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 864
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+LW+++ R + H V GV F P G ++ SDD++I ++E
Sbjct: 865 ELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
V +S DG+RIA D T+ VF + L ++ H V +S D + + S
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCS 676
Query: 221 DDTHVHMYDAEGKSLVTAMSGHASWV--LSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
D V ++D+ LV H+ V + + TGS+D +KLWDLN +
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+M HT+ V F P + S S D ++ L++
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 65/329 (19%), Positives = 118/329 (35%), Gaps = 57/329 (17%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
LL TGS D +KLW + + T GH V P + AS S D +R++DV +
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 92 NASIATL---------EASPSEV--------WQMQFDP----------------KGTTLA 118
++ E P +V W D G
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834
Query: 119 VAGGGSASVKLWDTATWNLIATLSIPR--------PEGLKPTDKSSSKKFVLSVAWSPDG 170
+ G ++++ D + ++ +A +++ + LK D +V V +SPDG
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894
Query: 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
S D TI V++ + + S + + V+F ++ + + +
Sbjct: 895 SSFLTASDDQTIRVWETKK-----------VCKNSAIVLKQEIDVVFQENETMVLAVDNI 943
Query: 231 EGKSLVTAMSGHASWVLSVDA-----SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
G L+ +G ++ SP + G D +K+ +L S H
Sbjct: 944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
V + F G ++S S+D I ++ +
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
KK V + ++ DG+ + S D I V++ ++ L+ H V+ + + L
Sbjct: 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD--FRLLQDSRLL 1059
Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
S S D V +++ + + H VLS S D ++ S+D+T K+W ++ +
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
+ + H V +F L G +++ DD
Sbjct: 1120 LHELKGHNGCVRCSAFS-LDGILLATGDD 1147
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 28/287 (9%)
Query: 52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD 111
L +TGH + P +A A V ++++D+ +A S V + F
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 112 PKGTTLAVAGGGSASVKLWDTATW------------------NLIATLSIPRPEGLKPTD 153
P G++ A ++++W+T N L++ GL+
Sbjct: 892 PDGSSFLTASD-DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 154 KSSSKKFVLSVA------WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV 207
+ + L A SP +A G DG I + ++ + GH VR +
Sbjct: 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010
Query: 208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267
++ D + L S+S+D+ + +++ + V + H V D + + + S D TV
Sbjct: 1011 FT-ADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQD-SRLLSWSFDGTV 1067
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
K+W++ + T H V + + S S DK+ ++ +
Sbjct: 1068 KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
LL+ S D TVK+W ++ER T H V+S A +S S D +++ D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-IPRPEGLKP 151
+ + L+ V F G LA G + +++W+ + L+ + + I EG
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLA-TGDDNGEIRIWNVSDGQLLHSCAPISVEEG--- 1173
Query: 152 TDKSSSKKFVLSVAWSPDGRRI 173
++ +V V +SPD + +
Sbjct: 1174 --TATHGGWVTDVCFSPDSKTL 1193
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 17/193 (8%)
Query: 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT 140
D +++ ++ N ++ V +QF G TL ++ + +++W+ T + +
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQTGDYV-- 1038
Query: 141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF 200
+ + K F L R+ S DGT+ V++V + H
Sbjct: 1039 --------FLQAHQETVKDFRLL-----QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ 1085
Query: 201 MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITT 260
V S S D S S D ++ + S + + GH V S DG + T
Sbjct: 1086 GTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLAT 1144
Query: 261 GSSDRTVKLWDLN 273
G + +++W+++
Sbjct: 1145 GDDNGEIRIWNVS 1157
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
H V S DG I + +D+T++++ + + H D+V +F +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 302 SVSDDKSISLYE 313
+ S DK + +++
Sbjct: 674 TCSADKKVKIWD 685
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII 74
E + +V W+ L G+ V+LW + R T H V S++ + I
Sbjct: 68 EYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121
Query: 75 AASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
+S S + DV +ATL EV +++ P G LA +GG V +W +A
Sbjct: 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSA 180
Query: 134 TWNLIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRI---ACGSMDGTISVFDVTR 189
P G P + + V +VAW P + G+ D I +++V
Sbjct: 181 ----------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHMYDAEGKSLVTAMSGHASWV 246
L ++ H V S+++SP ++ A + + Y K V + GH S V
Sbjct: 231 GACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRV 287
Query: 247 LSVDASPDGAAITTGSSDRTVKLW 270
LS+ SPDGA + + ++D T++LW
Sbjct: 288 LSLTMSPDGATVASAAADETLRLW 311
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 38/237 (16%)
Query: 113 KGTTLAVAGGGSASVKLWD------------------TATWNLIATLSIPRPEGLKPTD- 153
+G LAV G SA V+LWD + +WN S R + D
Sbjct: 78 EGNYLAV-GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 136
Query: 154 ---------KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHF 200
S + V + W+PDGR +A G D ++V+ + L H
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 201 MPVRSLVYSPVDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI 258
V+++ + P VL + + D H+ +++ + ++A+ H+ V S+ SP +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 255
Query: 259 TTGS--SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+G + + +W A + + HT +V ++ P G V S + D+++ L+
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 222 DTHVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279
D V+++ A ++ M ++ SV +G + G+S V+LWD+ + ++
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 280 SMTNHTDQVWGVSF 293
+MT+H+ +V +S+
Sbjct: 104 NMTSHSARVGSLSW 117
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 71/286 (24%), Positives = 112/286 (39%), Gaps = 54/286 (18%)
Query: 76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135
AS D ++VF +T + ++A EV F + +A VK+WD+AT
Sbjct: 638 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-DKKVKIWDSATG 696
Query: 136 NLIATLS--IPRPEGLKPTDKSS-------SKKFVLSV---------------------- 164
L+ T + T+KS+ S F L +
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP----RVL---- 216
+SPD +A S DGT+ ++DV A E + V+ S DP V+
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSAN-----ERKSINVKRFFLSSEDPPEDVEVIVKCC 811
Query: 217 -FSASDD-------THVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTV 267
+SA D V ++D L+ + +GH S + D SP S V
Sbjct: 812 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 871
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+LW+++ R + H V GV F P G ++ SDD++I ++E
Sbjct: 872 ELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
V +S DG+RIA D T+ VF + L ++ H V +S D + + S
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCS 683
Query: 221 DDTHVHMYDAEGKSLVTAMSGHASWV--LSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
D V ++D+ LV H+ V + + TGS+D +KLWDLN +
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+M HT+ V F P + S S D ++ L++
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 65/329 (19%), Positives = 118/329 (35%), Gaps = 57/329 (17%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
LL TGS D +KLW + + T GH V P + AS S D +R++DV +
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 92 NASIATL---------EASPSEV--------WQMQFDP----------------KGTTLA 118
++ E P +V W D G
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 841
Query: 119 VAGGGSASVKLWDTATWNLIATLSIPR--------PEGLKPTDKSSSKKFVLSVAWSPDG 170
+ G ++++ D + ++ +A +++ + LK D +V V +SPDG
Sbjct: 842 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 901
Query: 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
S D TI V++ + + S + + V+F ++ + + +
Sbjct: 902 SSFLTASDDQTIRVWETKK-----------VCKNSAIVLKQEIDVVFQENETMVLAVDNI 950
Query: 231 EGKSLVTAMSGHASWVLSVDA-----SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285
G L+ +G ++ SP + G D +K+ +L S H
Sbjct: 951 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1010
Query: 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
V + F G ++S S+D I ++ +
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217
KK V + ++ DG+ + S D I V++ ++ L+ H V+ + + L
Sbjct: 1010 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD--FRLLQDSRLL 1066
Query: 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
S S D V +++ + + H VLS S D ++ S+D+T K+W ++ +
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
+ + H V +F L G +++ DD
Sbjct: 1127 LHELKGHNGCVRCSAFS-LDGILLATGDD 1154
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 28/287 (9%)
Query: 52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD 111
L +TGH + P +A A V ++++D+ +A S V + F
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 112 PKGTTLAVAGGGSASVKLWDTATW------------------NLIATLSIPRPEGLKPTD 153
P G++ A ++++W+T N L++ GL+
Sbjct: 899 PDGSSFLTASD-DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 154 KSSSKKFVLSVA------WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV 207
+ + L A SP +A G DG I + ++ + GH VR +
Sbjct: 958 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1017
Query: 208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267
++ D + L S+S+D+ + +++ + V + H V D + + + S D TV
Sbjct: 1018 FT-ADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQD-SRLLSWSFDGTV 1074
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314
K+W++ + T H V + + S S DK+ ++ +
Sbjct: 1075 KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
LL+ S D TVK+W ++ER T H V+S A +S S D +++ D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-IPRPEGLKP 151
+ + L+ V F G LA G + +++W+ + L+ + + I EG
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLA-TGDDNGEIRIWNVSDGQLLHSCAPISVEEG--- 1180
Query: 152 TDKSSSKKFVLSVAWSPDGRRI 173
++ +V V +SPD + +
Sbjct: 1181 --TATHGGWVTDVCFSPDSKTL 1200
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 17/193 (8%)
Query: 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT 140
D +++ ++ N ++ V +QF G TL ++ + +++W+ T + +
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQTGDYV-- 1045
Query: 141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF 200
+ + K F L R+ S DGT+ V++V + H
Sbjct: 1046 --------FLQAHQETVKDFRLL-----QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ 1092
Query: 201 MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITT 260
V S S D S S D ++ + S + + GH V S DG + T
Sbjct: 1093 GTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLAT 1151
Query: 261 GSSDRTVKLWDLN 273
G + +++W+++
Sbjct: 1152 GDDNGEIRIWNVS 1164
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
H V S DG I + +D+T++++ + + H D+V +F +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 302 SVSDDKSISLYE 313
+ S DK + +++
Sbjct: 681 TCSADKKVKIWD 692
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII 74
E + +V W+ L G+ V+LW + R T H V S++ + I
Sbjct: 148 EYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 201
Query: 75 AASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
+S S + DV +ATL EV +++ P G LA +GG V +W +A
Sbjct: 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSA 260
Query: 134 TWNLIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRIAC---GSMDGTISVFDVTR 189
P G P + + V +VAW P + G+ D I +++V
Sbjct: 261 ----------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHMYDAEGKSLVTAMSGHASWV 246
L ++ H V S+++SP ++ A + + Y K V + GH S V
Sbjct: 311 GACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRV 367
Query: 247 LSVDASPDGAAITTGSSDRTVKLW 270
LS+ SPDGA + + ++D T++LW
Sbjct: 368 LSLTMSPDGATVASAAADETLRLW 391
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP 210
S + V + W+PDGR +A G D ++V+ + L H V+++ + P
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 211 VDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS--SDRT 266
VL + + D H+ +++ + ++A+ H+ V S+ SP + +G +
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQ 345
Query: 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+ +W A + + HT +V ++ P G V S + D+++ L+
Sbjct: 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 222 DTHVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279
D V+++ A ++ M ++ SV +G + G+S V+LWD+ + ++
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 280 SMTNHTDQVWGVSF 293
+MT+H+ +V +S+
Sbjct: 184 NMTSHSARVGSLSW 197
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII 74
E + +V W+ L G+ V+LW + R T H V S++ + I
Sbjct: 159 EYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 212
Query: 75 AASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
+S S + DV +ATL EV +++ P G LA +GG V +W +A
Sbjct: 213 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSA 271
Query: 134 TWNLIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRI---ACGSMDGTISVFDVTR 189
P G P + + V +VAW P + G+ D I +++V
Sbjct: 272 ----------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 321
Query: 190 AKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHMYDAEGKSLVTAMSGHASWV 246
L ++ H V S+++SP ++ A + + Y K V + GH S V
Sbjct: 322 GACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRV 378
Query: 247 LSVDASPDGAAITTGSSDRTVKLW 270
LS+ SPDGA + + ++D T++LW
Sbjct: 379 LSLTMSPDGATVASAAADETLRLW 402
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP 210
S + V + W+PDGR +A G D ++V+ + L H V+++ + P
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 211 VDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS--SDRT 266
VL + + D H+ +++ + ++A+ H+ V S+ SP + +G +
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQ 356
Query: 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
+ +W A + + HT +V ++ P G V S + D+++ L+
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 222 DTHVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279
D V+++ A ++ M ++ SV +G + G+S V+LWD+ + ++
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 280 SMTNHTDQVWGVSF 293
+MT+H+ +V +S+
Sbjct: 195 NMTSHSARVGSLSW 208
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208
L TD+S+ +V SV WS DG ++ G +G + ++DV L + GH V L +
Sbjct: 128 LAETDEST---YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW 184
Query: 209 SPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267
+ VL S S +H +D + + GH+S V + DG + +G +D V
Sbjct: 185 ---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRP 295
++WD + TNH V V++ P
Sbjct: 242 QIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 22/223 (9%)
Query: 54 RTNTGHC--LGVVSVAAHPSGIIAASASLDSFVRVFDVD-TNASIATLEASPSEVWQMQF 110
RT GH +G +S H + +S S + DV N I TL+ SEV + +
Sbjct: 170 RTMAGHQARVGCLSWNRH----VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225
Query: 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG 170
G LA +GG V++WD A SIP+ T+ +++ K V W +
Sbjct: 226 RSDGLQLA-SGGNDNVVQIWD-------ARSSIPK---FTKTNHNAAVKAVAWCPWQSNL 274
Query: 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS---ASDDTHVHM 227
G+MD I ++ ++ ++ V SL++SP ++ + ++ +
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWS 333
Query: 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW 270
Y + G + + H + VL SPDG ++T +SD +K W
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP--SGIIA-ASASLDSFVRVFDV 89
L +G D V++W + T T H V +VA P S ++A ++D + ++
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291
Query: 90 DTNASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148
T A + T++A S+V + + P ++ G ++ +W ++ L + IP
Sbjct: 292 ATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP---- 346
Query: 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
+ VL A SPDGR ++ + D + + V
Sbjct: 347 -------AHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
+QF+ +G L A GS V L++ + I L D + + F +
Sbjct: 60 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 111
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
AW+ D +A G I + + + + H GH + L + P DP +L S S
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
D + +++ + +LV + GH VLS D G I + D ++KLW +N +
Sbjct: 172 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
M ++ D + RP + + D
Sbjct: 232 MNAIKESYDYNPNKTNRPFISQKIHFPD 259
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG- 72
+E+ + W + T LL +++ P MQ + GH + + HP
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 164
Query: 73 IIAASASLDSFVRVFDVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
+ S S D +R++++ T+ +A E EV +D G + ++ G S+KL
Sbjct: 165 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI-MSCGMDHSLKL 223
Query: 130 W 130
W
Sbjct: 224 W 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
+QF+ +G L A GS V L++ + I L D + + F +
Sbjct: 19 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 70
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
AW+ D +A G I + + + + H GH + L + P DP +L S S
Sbjct: 71 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 130
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
D + +++ + +LV + GH VLS D G I + D ++KLW +N +
Sbjct: 131 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
M ++ D + RP + + D
Sbjct: 191 MNAIKESYDYNPNKTNRPFISQKIHFPD 218
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG- 72
+E+ + W + T LL +++ P MQ + GH + + HP
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 123
Query: 73 IIAASASLDSFVRVFDVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
+ S S D +R++++ T+ +A E EV +D G + ++ G S+KL
Sbjct: 124 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI-MSCGMDHSLKL 182
Query: 130 W 130
W
Sbjct: 183 W 183
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
+QF+ +G L A GS V L++ + I L D + + F +
Sbjct: 23 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 74
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
AW+ D +A G I + + + + H GH + L + P DP +L S S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
D + +++ + +LV + GH VLS D G I + D ++KLW +N +
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
M ++ D + RP + + D
Sbjct: 195 MNAIKESYDYNPNKTNRPFISQKIHFPD 222
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG- 72
+E+ + W + T LL +++ P MQ + GH + + HP
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 73 IIAASASLDSFVRVFDVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
+ S S D +R++++ T+ +A E EV +D G + ++ G S+KL
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI-MSCGMDHSLKL 186
Query: 130 W 130
W
Sbjct: 187 W 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
+QF+ +G L A GS V L++ + I L D + + F +
Sbjct: 23 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 74
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
AW+ D +A G I + + + + H GH + L + P DP +L S S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
D + +++ + +LV + GH VLS D G I + D ++KLW +N +
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
M ++ D + RP + + D
Sbjct: 195 MNAIKESYDYNPNKTNRPFISQKIHFPD 222
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG- 72
+E+ + W + T LL +++ P MQ + GH + + HP
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 73 IIAASASLDSFVRVFDVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
+ S S D +R++++ T+ +A E EV +D G + ++ G S+KL
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI-MSCGMDHSLKL 186
Query: 130 W 130
W
Sbjct: 187 W 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)
Query: 108 MQFD---PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
+QF+ +G L A GS V L++ + I L D + + F +
Sbjct: 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENF-YTC 75
Query: 165 AWSPDGRR----IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220
AW+ D +A G I + + + + H GH + L + P DP +L S S
Sbjct: 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135
Query: 221 DDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277
D + +++ + +LV + GH VLS D G I + D ++KLW +N +
Sbjct: 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Query: 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
M ++ D + RP + + D
Sbjct: 196 MNAIKESYDYNPNKTNRPFISQKIHFPD 223
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG- 72
+E+ + W + T LL +++ P MQ + GH + + HP
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 128
Query: 73 IIAASASLDSFVRVFDVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129
+ S S D +R++++ T+ +A E EV +D G + ++ G S+KL
Sbjct: 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI-MSCGMDHSLKL 187
Query: 130 W 130
W
Sbjct: 188 W 188
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 20/282 (7%)
Query: 2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
KF ++ H SV + + ++TG+ D+ ++++ + + +GH
Sbjct: 109 KFVPQRTTLRGHXTSV-----ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDG 163
Query: 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF-DPKGTTLAVA 120
GV ++ GI+ S S D VRV+D+ E S V + + K V
Sbjct: 164 GVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 121 GGGSASVKLWDTATWNLIAT--------LSIPRPEGLKPTDKSSSKKFVLSV-AWSPDGR 171
G ++ +W + + L PE P + SV S G
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVLRGHXASVRTVSGHGN 281
Query: 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231
+ GS D T+ V+DV + K L+ L GH + S +Y R + SAS DT + ++D E
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDLE 340
Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
L + GH + V + S + + ++D +++ WD N
Sbjct: 341 NGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 380
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 155 SSSKKFVLSVA------WS---PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS 205
S +KKF+L ++ W+ G + GS D T+ V+D+ + H EGH VR
Sbjct: 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208
Query: 206 L-VYSPVDPRVLFSASDDTHVHMYD-----------------------AEGKSLVTAMSG 241
L + + + + + S D +H++ E V + G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
H + V +V S G + +GS D T+ +WD+ + ++ HTD+++ + R +
Sbjct: 269 HXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 302 SVSDDKSISLYE 313
S S D +I +++
Sbjct: 327 SASXDTTIRIWD 338
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 93/264 (35%), Gaps = 40/264 (15%)
Query: 45 WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE 104
+ P + T GH V++ + A D +RV+D + L
Sbjct: 106 YNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGAD-DKXIRVYDSINKKFLLQLSGHDGG 164
Query: 105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
VW +++ G + V+G +V++WD EG T + L +
Sbjct: 165 VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVF-----EGHNSTVR------CLDI 211
Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAK-----------------------FLHHLEGHFM 201
+ + I GS D T+ V+ + + F+ L GH
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG 261
VR++ ++ S S D + ++D + +SGH + S + +
Sbjct: 272 SVRTV---SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 262 SSDRTVKLWDLNMRAAMQSMTNHT 285
S D T+++WDL ++ HT
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHT 352
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296
T + GH + V++ D IT G+ D+ ++++D + + ++ H VW + +
Sbjct: 115 TTLRGHXTSVITCLQFEDNYVIT-GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH- 172
Query: 297 GGRVVSVSDDKSISLYE 313
GG +VS S D+++ +++
Sbjct: 173 GGILVSGSTDRTVRVWD 189
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 20/282 (7%)
Query: 2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
KF ++ H SV + + ++TG+ D+ ++++ + + +GH
Sbjct: 109 KFVPQRTTLRGHMTSV-----ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG 163
Query: 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF-DPKGTTLAVA 120
GV ++ GI+ S S D VRV+D+ E S V + + K V
Sbjct: 164 GVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 121 GGGSASVKLWDTATWNLIAT--------LSIPRPEGLKPTDKSSSKKFVLSV-AWSPDGR 171
G ++ +W + + L PE P + + SV S G
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVLRGHMASVRTVSGHGN 281
Query: 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231
+ GS D T+ V+DV + K L+ L GH + S +Y R + SAS DT + ++D E
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLE 340
Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273
L+ + GH + V + S + + ++D +++ WD N
Sbjct: 341 NGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 380
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 155 SSSKKFVLSVA------WS---PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS 205
S +KKF+L ++ W+ G + GS D T+ V+D+ + H EGH VR
Sbjct: 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208
Query: 206 L-VYSPVDPRVLFSASDDTHVHMYD-----------------------AEGKSLVTAMSG 241
L + + + + + S D +H++ E V + G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
H + V +V S G + +GS D T+ +WD+ + ++ HTD+++ + R +
Sbjct: 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 302 SVSDDKSISLYE 313
S S D +I +++
Sbjct: 327 SASMDTTIRIWD 338
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 40/264 (15%)
Query: 45 WRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE 104
+ P + T GH V++ + A D +RV+D + L
Sbjct: 106 YNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGAD-DKMIRVYDSINKKFLLQLSGHDGG 164
Query: 105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164
VW +++ G + V+G +V++WD I + + +S L +
Sbjct: 165 VWALKYAHGG--ILVSGSTDRTVRVWD-----------IKKGCCTHVFEGHNSTVRCLDI 211
Query: 165 AWSPDGRRIACGSMDGTISVFDVTRAK-----------------------FLHHLEGHFM 201
+ + I GS D T+ V+ + + F+ L GH
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG 261
VR++ ++ S S D + ++D + +SGH + S + +
Sbjct: 272 SVRTV---SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 262 SSDRTVKLWDLNMRAAMQSMTNHT 285
S D T+++WDL M ++ HT
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHT 352
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296
T + GH + V++ D IT G+ D+ ++++D + + ++ H VW + +
Sbjct: 115 TTLRGHMTSVITCLQFEDNYVIT-GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 172
Query: 297 GGRVVSVSDDKSISLYE 313
GG +VS S D+++ +++
Sbjct: 173 GGILVSGSTDRTVRVWD 189
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 25/213 (11%)
Query: 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171
P G A +G +V++WDT I +IP G V ++W + +
Sbjct: 69 PSGYYCA-SGDVHGNVRIWDTTQTTHILKTTIPVFSGP-----------VKDISWDSESK 116
Query: 172 RIACGSMD----GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227
RIA G + +FD + +L G + S+ + P P + S SDD V +
Sbjct: 117 RIAAVGEGRERFGHVFLFDTGTSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW---DLNMRAAMQ--SMT 282
++ + H +V SV +PDG+ + D T+ L+ D + S+
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 283 N--HTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
N H+ V+G+++ P G ++ S S DK+I ++
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 96/239 (40%), Gaps = 34/239 (14%)
Query: 70 PSGIIAASASLDSFVRVFDVDTNASI--ATLEASPSEVWQMQFDPKGTTLAVAGGGS--- 124
PSG AS + VR++D I T+ V + +D + +A G G
Sbjct: 69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128
Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184
V L+DT T N T + + D S+ F RI GS D T+++
Sbjct: 129 GHVFLFDTGTSNGNLT---GQARAMNSVDFKPSRPF-----------RIISGSDDNTVAI 174
Query: 185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA---------EGKSL 235
F+ KF H V S+ Y+P D + S D + +Y+ E SL
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233
Query: 236 VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD---LNMRAAMQSMTNHTDQVWGV 291
H+ V + SPDG I + S+D+T+K+W+ L + + T DQ G+
Sbjct: 234 KNV--AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 21/209 (10%)
Query: 28 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF 87
+RP +++GS D TV ++ + + T H V SV +P G + AS D + ++
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 88 DVDTNASIATLE-------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT 140
+ E A V+ + + P GT +A A ++K+W+ AT + T
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA-SADKTIKIWNVATLKVEKT 276
Query: 141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF 200
+ P G + D+ L + W+ + + S +G I+ + GH
Sbjct: 277 I----PVGTRIEDQQ------LGIIWTK--QALVSISANGFINFVNPELGSIDQVRYGHN 324
Query: 201 MPVRSLVYSPVDPRVLFSASDDTHVHMYD 229
+ +L S D + LFSA + H++ +D
Sbjct: 325 KAITAL-SSSADGKTLFSADAEGHINSWD 352
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN 136
S S D+ V +F+ +T V ++++P G+ A + GG ++ L++
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA-STGGDGTIVLYNGVDGT 223
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 196
+ LK S S V + WSPDG +IA S D TI +++V K +
Sbjct: 224 KTGVF---EDDSLKNVAHSGS---VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 197 EGHFMPVRSLVYSPV-----DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251
PV + + + L S S + ++ + E S+ GH + ++ +
Sbjct: 278 -----PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332
Query: 252 SPDGAAITTGSSDRTVKLWDL 272
S DG + + ++ + WD+
Sbjct: 333 SADGKTLFSADAEGHINSWDI 353
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 132/341 (38%), Gaps = 50/341 (14%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVS 65
LK+V AH SV+ +TW P + + S D+T+K+W +++E+T +G
Sbjct: 233 LKNV--AHSGSVFGLTWSP----DGTKIASASADKTIKIWNVATLKVEKTIP---VG-TR 282
Query: 66 VAAHPSGII-----AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120
+ GII S S + F+ + + + + + G TL +
Sbjct: 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL-FS 341
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTD-KSSSKKFVLSVAWSPDGRRIACG--- 176
+ WD +T I+ P T K++SK + +V+W + + G
Sbjct: 342 ADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399
Query: 177 --------------------SMDGTISVFDVTRAKFLH-HLEGHFMPV---RSLVYSPVD 212
S DG I+V + ++ H + +P+ S V D
Sbjct: 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
+ + D+ VH+Y G S+ + H + + SV S +GA + R V +
Sbjct: 460 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519
Query: 272 LNMR---AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSI 309
+ A S T HT +V VS+ P R+ + S D S+
Sbjct: 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 161 VLSVAWSPDGRRIACGSMDGTISVFDVTR 189
V V+WSPD R+A GS+D ++ V+++ +
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVWNMNK 567
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS----- 218
VA S D + +A G D + V+ ++ A V+++V+ V FS
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASV--------SEVKTIVHPAEITSVAFSNNGAF 505
Query: 219 --ASDDTHVHMYDAEGKSLVTAMSG----HASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
A+D + + + + A + H + V V SPD + TGS D +V +W++
Sbjct: 506 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Query: 273 N 273
N
Sbjct: 566 N 566
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF------DVT-RAKFLHHLEGHFMPVRS 205
D+++ KK + SVAW P +A GS D T+S++ D T L +EGH V+
Sbjct: 53 DETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG 112
Query: 206 LVYSPVDPRVLFSASDDTHVHMYD----AEGKSLVTAMSGHASWVLSVDASPDGAAITTG 261
+ +S D L + S D V +++ E ++ + H+ V V P A + +
Sbjct: 113 VAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 262 SSDRTVKLW-DLNMRAAMQSMTN-HTDQVWGVSFRPLGG--RVVSVSDDKSISLYEY 314
S D TV++W D + ++ N H VW F G R+ S SDD ++ +++Y
Sbjct: 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 32/196 (16%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG----HCL 61
L ++ HE V V W L T S D++V +W D+ E H
Sbjct: 99 LLAIIEGHENEVKGVAW----SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 62 GVVSVAAHPSGIIAASASLDSFVRVF-DVDTN-ASIATLEASPSEVWQMQFDP-KGTTLA 118
V V HPS + AS+S D VR++ D D + +A L VW FD +G
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
Query: 119 VAGGGSASVKLW--------DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG 170
+G ++V++W D W A L P+ K+ V +VAW +G
Sbjct: 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL----PD--------VHKRQVYNVAWGFNG 262
Query: 171 RRIACGSMDGTISVFD 186
IA DG ++V++
Sbjct: 263 -LIASVGADGVLAVYE 277
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++ D+ VK W + Q+E GH + ++ A P G + ASA D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
++ TL A EV+ + F P LA A + +K++ L+ L RPE +
Sbjct: 229 KAMYTLSAQ-DEVFSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDL---RPEFAGYS 282
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
++++ +S+AWS DG+ + G D I V+ V A
Sbjct: 283 --AAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
VT + + +P LLL+ S D+T+ W+ DD + R+ GH V G
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
A SAS D +R++DV T + S+V + D K + + ++G ++K+W T
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
+ATL L D S + V + D I D + +++ + +
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
GH + +L SP D ++ SA D + +++ K + +S V S+ SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
AA TG
Sbjct: 249 RYWLAAATATG 259
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
+ DG S D T+ ++DV + GH V S+ +D + ++ S S D
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
+ ++ +G+ L T + GH WV V P D I + +D+ VK W+LN
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
H + ++ P G + S D I L+
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-----VTAMSGHASWVLSVD 250
LEGH V SL S P +L SAS D + + G V + GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
+ DGA + S D+T++LWD+ Q H V V ++S S DK+I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 311 LY 312
++
Sbjct: 133 VW 134
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++ D+ VK W + Q+E GH + ++ A P G + ASA D + ++++
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
++ TL A EV+ + F P LA A + +K++ L+ L RPE +
Sbjct: 223 KAMYTLSAQ-DEVFSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDL---RPEFAGYS 276
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
+++ +S+AWS DG+ + G D I V+ V A
Sbjct: 277 --KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
VT + + +P LLL+ S D+T+ W+ DD + R+ GH V G
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 73
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
A SAS D +R++DV T + S+V + D K + + ++G ++K+W T
Sbjct: 74 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 131
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
+ATL L D S + V + D I D + +++ + +
Sbjct: 132 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
GH + +L SP D ++ SA D + +++ K + +S V S+ SP+
Sbjct: 185 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 242
Query: 255 ----GAAITTG 261
AA TG
Sbjct: 243 RYWLAAATATG 253
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
+ DG S D T+ ++DV + GH V S+ +D + ++ S S D
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 124
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
+ ++ +G+ L T + GH WV V P D I + +D+ VK W+LN
Sbjct: 125 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
H + ++ P G + S D I L+
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-----VTAMSGHASWVLSVD 250
LEGH V SL S P +L SAS D + + G V + GH+ V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
+ DGA + S D+T++LWD+ Q H V V ++S S DK+I
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 311 LY 312
++
Sbjct: 127 VW 128
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++ D+ VK W + Q+E GH + ++ A P G + ASA D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
++ TL A EV+ + F P LA A + +K++ L+ L RPE +
Sbjct: 229 KAMYTLSAQ-DEVFSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDL---RPEFAGYS 282
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
+++ +S+AWS DG+ + G D I V+ V A
Sbjct: 283 --KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
VT + + +P LLL+ S D+T+ W+ DD + R+ GH V G
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
A SAS D +R++DV T + S+V + D K + + ++G ++K+W T
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
+ATL L D S + V + D I D + +++ + +
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
GH + +L SP D ++ SA D + +++ K + +S V S+ SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
AA TG
Sbjct: 249 RYWLAAATATG 259
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
+ DG S D T+ ++DV + GH V S+ +D + ++ S S D
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
+ ++ +G+ L T + GH WV V P D I + +D+ VK W+LN
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
H + ++ P G + S D I L+
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-----VTAMSGHASWVLSVD 250
LEGH V SL S P +L SAS D + + G V + GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
+ DGA + S D+T++LWD+ Q H V V ++S S DK+I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 311 LY 312
++
Sbjct: 133 VW 134
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++ D+ VK W + Q+E GH + ++ A P G + ASA D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
++ TL A EV+ + F P LA A + +K++ L+ L RPE +
Sbjct: 229 KAMYTLSAQ-DEVFSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDL---RPEFAGYS 282
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
+++ +S+AWS DG+ + G D I V+ V A
Sbjct: 283 --KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
VT + + +P LLL+ S D+T+ W+ DD + R+ GH V G
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
A SAS D +R++DV T + S+V + D K + + ++G ++K+W T
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
+ATL L D S + V + D I D + +++ + +
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
GH + +L SP D ++ SA D + +++ K + +S V S+ SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
AA TG
Sbjct: 249 RYWLAAATATG 259
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
+ DG S D T+ ++DV + GH V S+ +D + ++ S S D
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
+ ++ +G+ L T + GH WV V P D I + +D+ VK W+LN
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
H + ++ P G + S D I L+
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-----VTAMSGHASWVLSVD 250
LEGH V SL S P +L SAS D + + G V + GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
+ DGA + S D+T++LWD+ Q H V V ++S S DK+I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 311 LY 312
++
Sbjct: 133 VW 134
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++ D+ VK W + Q+E GH + ++ A P G + ASA D + ++++
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
+ TL A EV+ + F P LA A + +K++ L+ L RPE +
Sbjct: 229 KAXYTLSAQ-DEVFSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDL---RPEFAGYS 282
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191
+++ +S+AWS DG+ + G D I V+ V A
Sbjct: 283 --KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 20/251 (7%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
VT + + +P LLL+ S D+T+ W+ DD + R+ GH V G
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
A SAS D +R++DV T + S+V + D K + + ++G ++K+W T
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
+ATL L D S + V + D I D + +++ + +
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
GH + +L SP D ++ SA D + +++ K +S V S+ SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
AA TG
Sbjct: 249 RYWLAAATATG 259
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV--LFSASDDTH 224
+ DG S D T+ ++DV + GH V S+ +D + + S S D
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV---DIDKKASXIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
+ ++ +G+ L T + GH WV V P D I + +D+ VK W+LN
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
H + ++ P G + S D I L+
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-----VTAMSGHASWVLSVD 250
LEGH V SL S P +L SAS D + + G V + GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
+ DGA + S D+T++LWD+ Q H V V ++S S DK+I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 311 LY 312
++
Sbjct: 133 VW 134
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV-----D 212
K V SV I GS D TI V+ + + + L L GH V + P D
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272
+ SA +D V ++ + GH S + ++ ASPDG I + D + LW+L
Sbjct: 166 SVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Query: 273 NMRAAMQSMTNHTDQVWGVSFRP 295
+ A +++ D+V+ ++F P
Sbjct: 226 AAKKAXYTLSAQ-DEVFSLAFSP 247
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 20/251 (7%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLWR--PDDMQLE---RTNTGHCLGVVSVAAHPSGII 74
VT + + +P LLL+ S D+T+ W+ DD + R+ GH V G
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134
A SAS D +R++DV T + S+V + D K + + ++G ++K+W T
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVW-TIK 137
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 194
+ATL L D S + V + D I D + +++ + +
Sbjct: 138 GQCLATL-------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254
GH + +L SP D ++ SA D + +++ K + +S V S+ SP+
Sbjct: 191 DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 255 ----GAAITTG 261
AA TG
Sbjct: 249 RYWLAAATATG 259
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92
+++ D+ VK W + Q+E GH + ++ A P G + ASA D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
++ TL A EV+ + F P LA A + +K++ L+ L RPE +
Sbjct: 229 KAMYTLSAQ-DEVFSLAFSPNRYWLAAA--TATGIKVFSLDPQYLVDDL---RPEFAGYS 282
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
+++ +S+AWS DG+ + G D I V+
Sbjct: 283 --KAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR--VLFSASDDTH 224
+ DG S D T+ ++DV + GH V S+ +D + ++ S S D
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIISGSRDKT 130
Query: 225 VHMYDAEGKSLVTAMSGHASWVLSVDASP------DGAAITTGSSDRTVKLWDLNMRAAM 278
+ ++ +G+ L T + GH WV V P D I + +D+ VK W+LN
Sbjct: 131 IKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
H + ++ P G + S D I L+
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-----VTAMSGHASWVLSVD 250
LEGH V SL S P +L SAS D + + G V + GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310
+ DGA + S D+T++LWD+ Q H V V ++S S DK+I
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 311 LY 312
++
Sbjct: 133 VW 134
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 25/215 (11%)
Query: 84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
+ V DV +N AT+ + + P GT + VA S V + DTAT N+IAT+
Sbjct: 14 ISVIDVTSNKVTATIPVGSNPXGAV-ISPDGTKVYVANAHSNDVSIIDTATNNVIATV-- 70
Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMP 202
P G P VA SPDG+++ T+SV D T ++ P
Sbjct: 71 --PAGSSP----------QGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSP 118
Query: 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS 262
+ L SP ++ + + D V + + K+++ +SV SP G A+T
Sbjct: 119 L-GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT--------VSVGRSPKGIAVTPDG 169
Query: 263 SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG 297
+ V +D + + ++TN V P G
Sbjct: 170 TKVYVANFDSXSISVIDTVTNSVIDTVKVEAAPSG 204
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 55/229 (24%)
Query: 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN------------ 56
V NAH V + AT A + GS + V + PD Q+ TN
Sbjct: 48 VANAHSNDVSIIDT--ATNNVIATVPAGSSPQGVAV-SPDGKQVYVTNXASSTLSVIDTT 104
Query: 57 TGHCLGVVSVAAHPSGI--------IAASASLDSFVRVFDVDTNASIATLEASPSEVWQM 108
+ G V P G+ + + + D V V + T A I T+ S +
Sbjct: 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGI 163
Query: 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP--------RPEGLKP--------- 151
P GT + VA S S+ + DT T ++I T+ + PEG K
Sbjct: 164 AVTPDGTKVYVANFDSXSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYF 223
Query: 152 ---------TDKSSSKKFV----LSVAWSPDGRRIACG-SMDGTISVFD 186
T+K +++ V +A +PDG+++ S T+SV D
Sbjct: 224 NTVSXIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 14/207 (6%)
Query: 63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
V +++ G A S D V+V+D+ A + + A SEV + P T+ ++ G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGT 181
+ LWDT +P+ D +S SV W P+ ACG G
Sbjct: 202 EDGRILLWDTR-----------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN 250
Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
+S+ ++ H + L YS L S S+D V + DA+ + +S
Sbjct: 251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS- 309
Query: 242 HASWVLSVDASP-DGAAITTGSSDRTV 267
H +V V SP D + TT D V
Sbjct: 310 HRDFVTGVAWSPLDHSKFTTVGWDHKV 336
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 211 VDPRVLFSASDDTHVHMYDA-EGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRT 266
V + + ASD V +++ E +SL+ A H V ++ DG +G D +
Sbjct: 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162
Query: 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYE 313
VK+WDL+ +A ++S H+ +V V+ P + +S +D I L++
Sbjct: 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 196 LEGHFMPVRSLV-----YSPVDPRVLFSASDDTHV---HMYDAEGKSLV----TAMSGHA 243
LEGH V S+V D VL S S D V +Y+ E A++GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV 303
+V + S + + S D+T++LWDL + H +V+ V+F P +++S
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 304 SDDKSISLY 312
++ I L+
Sbjct: 137 GAEREIKLW 145
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 54/288 (18%)
Query: 32 LLLTGSLDETVKLWRPDDMQLE-------RTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84
+L++GS D+TV +W+ + + + TGH V +A A S+S D +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 85 RVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP 144
R++D+ T + SEV+ + F P + ++ G +KL WN++
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKL-----WNILGECKFS 154
Query: 145 RPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR 204
E K + +V V +SP M
Sbjct: 155 SAE------KENHSDWVSCVRYSP-------------------------------IMKSA 177
Query: 205 SLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD 264
+ V P P S D + +++ + T H S V + SP+G I TG D
Sbjct: 178 NKV-QPFAP-YFASVGWDGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIATGGKD 234
Query: 265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312
+ + +WD+ Q + + ++F P + V+V D+ + ++
Sbjct: 235 KKLLIWDILNLTYPQREFDAGSTINQIAFNP-KLQWVAVGTDQGVKIF 281
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL 98
D +K+W + Q+ T H V ++ P+G A+ D + ++D+ N +
Sbjct: 193 DGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-LNLTYPQR 250
Query: 99 EA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157
E + S + Q+ F+PK +AV G VK+++ T + +I K +
Sbjct: 251 EFDAGSTINQIAFNPKLQWVAV--GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVF 185
S+AW+ G+++ G DG I F
Sbjct: 309 NPQCTSLAWNALGKKLFAGFTDGVIRTF 336
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219
FV +A S + S D T+ ++D+ GH V S+ +SP D R + SA
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSA 136
Query: 220 SDDTHVHMYDAEGKSLVTA--MSGHASWVLSVDAS----------PDGAAITTGSSDRTV 267
+ + +++ G+ ++ H+ WV V S P + D +
Sbjct: 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196
Query: 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313
K+W+ N + + H V +S P G + + DK + +++
Sbjct: 197 KVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-RTNTGHCLG 62
A ++ V+ ++ W V + A ++ G + +KL+ +M L TN + G
Sbjct: 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN--G 211
Query: 63 VVSVAAHPSGI---IAASASLDSFVRVFDVDTN------ASIATLEASPSEVWQMQFDPK 113
V S+ I + SL+ VFD+ T AS++ +A S VWQ++ P+
Sbjct: 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE-KAHKSTVWQVRHLPQ 270
Query: 114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP---------TDKSSSKKFVLSV 164
L + GG+ + LW + S EG++ + + S + + S+
Sbjct: 271 NRELFLTAGGAGGLHLW---KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327
Query: 165 AWSPDGRRIA-CGSMDGTISVFDVTR 189
WSPD R + C S D T+ V VT+
Sbjct: 328 DWSPDKRGLCVCSSFDQTVRVLIVTK 353
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 180 GTISVFDVTRA--KFLHHLEGHFMPVRSLVY--SPVDPRVLFSASDDTHVHMYDAEGKSL 235
G I ++++ K L +E P++ + + + R L + ++H+++ E +
Sbjct: 44 GVIQLYEIQHGDLKLLREIE-KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM 102
Query: 236 -VTAMSGHASWV------LSVDASPDGAAITTGSSDRTVKLWDLNMR----AAMQSMTNH 284
V ++ GH + + I TGS D TVK+WD + A M+ +
Sbjct: 103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162
Query: 285 TDQ-VWGVSF 293
+ W V+F
Sbjct: 163 NKRDCWTVAF 172
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
EV + ++ P+ + S+ V ++D S P P G D +K
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVFD-----YTKHPSKPEPSGECQPDLRLRGHQKEG 184
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHH-------LEGHFMPVRSLVYSPVDP 213
++W+P+ + S D TI ++D+ H GH V + + +
Sbjct: 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 214 RVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKL 269
+ S +DD + ++D + + H + V + +P I TGS+D+TV L
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVS 304
WDL N++ + S +H D+++ V + P +++ S
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
H++ + ++W P LL+ S D T+ LW P + ++ + TGH V
Sbjct: 179 GHQKEGYGLSWNPNLN---GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
VA H + S + D + ++D N + T++A +EV + F+P +
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
G +V LWD R LK S K + V WSP I A D
Sbjct: 296 GSADKTVALWDL------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
+ V+D+++ F+H GH + ++P +P ++ S S+D
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDN 401
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTAMSGHASWVLSVDAS 252
H ++ H V L ++P +L + S D V ++D L + + H + V S
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330
Query: 253 PDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
P I S +DR + +WDL+ QS + D + F GG +SD
Sbjct: 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISD 383
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
H++ + ++W P LL+ S D T+ LW P + ++ + TGH V
Sbjct: 183 GHQKEGYGLSWNPNLN---GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
VA H + S + D + ++D N + T++A +EV + F+P +
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
G +V LWD R LK S K + V WSP I A D
Sbjct: 300 GSADKTVALWDL------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
+ V+D+++ F+H GH + ++P +P ++ S S+D
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDN 405
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
EV + ++ P+ + S+ V ++D S P P G D +K
Sbjct: 134 EVNRARYMPQNACVIATKTPSSDVLVFD-----YTKHPSKPEPSGECQPDLRLRGHQKEG 188
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHH-------LEGHFMPVRSLVYSPVDP 213
++W+P+ + S D TI ++D+ H GH V + + +
Sbjct: 189 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 248
Query: 214 RVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKL 269
+ S +DD + ++D + + H + V + +P I TGS+D+TV L
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISLYEYS 315
WDL N++ + S +H D+++ V + P +++ S D+ + +++ S
Sbjct: 309 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTAMSGHASWVLSVDAS 252
H ++ H V L ++P +L + S D V ++D L + + H + V S
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 334
Query: 253 PDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
P I S +DR + +WDL+ QS + D + F GG +SD
Sbjct: 335 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISD 387
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
EV + ++ P+ + S+ V ++D S P P G D +K
Sbjct: 132 EVNRARYMPQNACVIATKTPSSDVLVFD-----YTKHPSKPEPSGECQPDLRLRGHQKEG 186
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHH-------LEGHFMPVRSLVYSPVDP 213
++W+P+ + S D TI ++D+ H GH V + + +
Sbjct: 187 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 246
Query: 214 RVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTVKL 269
+ S +DD + ++D + + H + V + +P I TGS+D+TV L
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 270 WDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISLYEYS 315
WDL N++ + S +H D+++ V + P +++ S D+ + +++ S
Sbjct: 307 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
H++ + ++W P LL+ S D T+ LW P + ++ + TGH V
Sbjct: 181 GHQKEGYGLSWNPNLN---GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
VA H + S + D + ++D N + T++A +EV + F+P +
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
G +V LWD R LK S K + V WSP I A D
Sbjct: 298 GSADKTVALWDL------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
+ V+D+++ F+H GH + ++P +P ++ S S+D
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDN 403
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTAMSGHASWVLSVDAS 252
H ++ H V L ++P +L + S D V ++D L + + H + V S
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 332
Query: 253 PDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
P I S +DR + +WDL+ QS + D + F GG +SD
Sbjct: 333 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISD 385
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP 70
AH SVW V +E + LT S D+T+KLW+ D ++ +T +G VV A
Sbjct: 139 QAHNASVWDAKVVSFSENK---FLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVV 193
Query: 71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
S S D +++ D T + T E S V+ ++ P G V+ G +V++W
Sbjct: 194 DDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI--VSCGEDRTVRIW 251
Query: 131 DTATWNLIATLSIP 144
+L +++P
Sbjct: 252 SKENGSLKQVITLP 265
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 199 HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI 258
H VR L + VD S S+D + + D ++ GH S+V + P+G +
Sbjct: 183 HNDVVRHL--AVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV 240
Query: 259 TTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306
+ G DRTV++W + Q +T +W V G +V SD+
Sbjct: 241 SCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDN 287
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM-YDAEGKSLVTAMSGHASWVLSVDASPD 254
L GH P+ + Y+ + +LFS S D+ + Y G+ L T + GH + S+D
Sbjct: 28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGT-LDGHTGTIWSIDVDCF 85
Query: 255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSI 309
TGS+D ++KLWD++ + + + V V F P G +++ D+ SI
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 310 SLYE 313
++YE
Sbjct: 145 NIYE 148
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 53/222 (23%)
Query: 57 TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116
TGH + V + G + S S DS V+ + TL+ +W + D T
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTK 87
Query: 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV------------ 164
V G S+KLWD + +AT P P +K + S + L++
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVP--VKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 165 ------------------------------------AWSPDGRRIACGSMDGTISVFDVT 188
WS G+ I G DG IS +DV+
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 189 -RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 229
+++ ++ H + + +SP D ++S DT+ + D
Sbjct: 206 NNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVD 246
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG 298
++GH + V + +G + + S D + +W + ++ HT +W +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 299 RVVSVSDDKSISLYEYS 315
V+ S D SI L++ S
Sbjct: 88 YCVTGSADYSIKLWDVS 104
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVD 212
VL +AW P + IA GS D T+ V+++ + L EGH V + + P
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAITTGSSDRTVKL 269
VL SA D + ++D + V + H + SVD S DGA I T D+ V++
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-------VTAMSGHASWVLSVD 250
GH PV + + P + V+ S S+D V +++ L V + GH V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 251 ASPDGA-AITTGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDK 307
P + + D + +WD+ AA+ ++ H D ++ V + G + + DK
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 308 SISLYE 313
+ + E
Sbjct: 199 RVRVIE 204
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 19/137 (13%)
Query: 58 GHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTNA-------SIATLEASPSEVWQMQ 109
GH V+ +A P + + AS S D V V+++ + TLE V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169
+ P + ++ G + +WD T + TL + SV WS D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG-----------PDVHPDTIYSVDWSRD 187
Query: 170 GRRIACGSMDGTISVFD 186
G I D + V +
Sbjct: 188 GALICTSCRDKRVRVIE 204
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 25/230 (10%)
Query: 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS--SSKKFV 161
EV + ++ P+ + S+ V ++D S P P G D +K
Sbjct: 126 EVNRARYMPQNPCIIATKTPSSDVLVFD-----YTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 162 LSVAWSPD-GRRIACGSMDGTISVFDVT---------RAKFLHHLEGHFMPVRSLVYSPV 211
++W+P+ + S D TI ++D++ AK + GH V + + +
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI--FTGHTAVVEDVSWHLL 238
Query: 212 DPRVLFSASDDTHVHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAI-TTGSSDRTV 267
+ S +DD + ++D + ++ H + V + +P I TGS+D+TV
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 268 KLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISLYEYS 315
LWDL N++ + S +H D+++ V + P +++ S D+ +++++ S
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 45/240 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
H++ + ++W P LL+ S D T+ LW P + ++ + TGH V
Sbjct: 175 GHQKEGYGLSWNPNLSGH---LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
V+ H + S + D + ++D +N + +++A +EV + F+P +
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
G +V LWD R LK S K + V WSP I A D
Sbjct: 292 GSADKTVALWDL------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
++V+D+++ F+H GH + ++P +P V+ S S+D
Sbjct: 340 RRLNVWDLSKIGEEQSPEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDN 397
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTAMSGHASWVLSVDAS 252
H ++ H V L ++P +L + S D V ++D L + + H + V S
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 326
Query: 253 PDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
P I S +DR + +WDL+ QS + D + F GG +SD
Sbjct: 327 PHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFI-HGGHTAKISD 379
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVD 212
VL +AW P + IA GS D T+ V+++ + L EGH V + + P
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAITTGSSDRTVKL 269
VL SA D + ++D + V + H + SVD S DGA I T D+ V++
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-------VTAMSGHASWVLSVD 250
GH PV + + P + V+ S S+D V +++ L V + GH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 251 ASPDGA-AITTGSSDRTVKLWDLNMRAAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDK 307
P + + D + +WD+ AA+ ++ H D ++ V + G + + DK
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 308 SISLYE 313
+ + E
Sbjct: 199 RVRVIE 204
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 30/160 (18%)
Query: 35 TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTNA 93
TG +D+ V L GH V+ +A P + + AS S D V V+++
Sbjct: 67 TGRVDKNVPL-----------VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
Query: 94 -------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP 146
+ TLE V + + P + ++ G + +WD T + TL
Sbjct: 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---- 171
Query: 147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD 186
+ SV WS DG I D + V +
Sbjct: 172 -------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76 ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
A+ S D +++F+V+ T+ I TL VW++ + PK T+ + V +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
+ W+ IA ++ S+S V SV W+P G + S DG +SV +
Sbjct: 85 ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
T + + ++ H + V S ++P + R + D V ++
Sbjct: 132 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRAAMQS 280
DA+ L + + GH+ WV V SP + + + S DRT +W + + +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
D +W S+ L G V+++S D ++L++
Sbjct: 250 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 170 GRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYS-PVDPRVLFSASDDTHVH 226
G+R+A S D TI +F+V K + L GH PV + ++ P +L S S D V
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 227 MYDAEGK--SLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVKL 269
++ E S + + H++ V SV +P G + SSD V +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 48/317 (15%)
Query: 35 TGSLDETVKLWRPD----DMQLERTNTGHCLGVVSV--AAHPSGIIAASASLDSFVRVFD 88
T S D+ +K+++ D + +L + H +V++ A+ G I ASAS D V++++
Sbjct: 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 89 VDTNAS---------IATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDT------ 132
D + + TL S ++ ++F P L +A G ++L+D
Sbjct: 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 133 ATWNLIA---TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFD 186
+W L + LSIP L+ F LS W P ++A +++ I ++
Sbjct: 148 RSWTLTSEXKVLSIPPANHLQ-------SDFCLS--WCPSRFSPEKLAVSALEQAI-IYQ 197
Query: 187 VTRAKFLH---HLEGHFMPVRSLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMS 240
+ LH L GH +RS+ ++P R ++ + D + ++ K A
Sbjct: 198 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE 257
Query: 241 GHASWVLSVDASPDGAAITTGSSD-RTVKLWDLNMRAAMQSMTNHTD---QVWGVSFRPL 296
+ D S D G SD T + +L ++ ++ H D +VW VS+
Sbjct: 258 ESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317
Query: 297 GGRVVSVSDDKSISLYE 313
G + S DD + L++
Sbjct: 318 GTILSSAGDDGKVRLWK 334
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76 ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
A+ S D +++F+V+ T+ I TL VW++ + PK T+ + V +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
+ W+ IA ++ S+S V SV W+P G + S DG +SV +
Sbjct: 85 ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
T + + ++ H + V S ++P + R + D V ++
Sbjct: 132 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRAAMQS 280
DA+ L + + GH+ WV V SP + + + S DRT +W + + +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
D +W S+ L G V+++S D ++L++
Sbjct: 250 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 170 GRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYS-PVDPRVLFSASDDTHVH 226
G+R+A S D TI +F+V K + L GH PV + ++ P +L S S D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 227 MYDAEGK--SLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVKL 269
++ E S + + H++ V SV +P G + SSD V +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 52/278 (18%)
Query: 72 GIIAASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVK 128
G A+ S D +++F+V+ T+ I TL VW++ + PK T+ + V
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 129 LW--DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISV 184
+W + W+ IA ++ S+S V SV W+P G + S DG +SV
Sbjct: 81 IWKEENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 185 FDV----TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY 228
+ T + + ++ H + V S ++P + R + D V ++
Sbjct: 128 VEFKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 229 ----DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRA 276
DA+ L + + GH+ WV V SP + + S DRT +W + +
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKK 245
Query: 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
+ D +W S+ L G V+++S D ++L++
Sbjct: 246 TLLKEEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 52/319 (16%)
Query: 35 TGSLDETVKLWRPD----DMQLERTNTGHCLGVVSV--AAHPSGIIAASASLDSFVRVFD 88
T S D+ +K+++ D + +L + H +V++ A+ G I ASAS D V++++
Sbjct: 26 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
Query: 89 VDTNAS---------IATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDT------ 132
D + + TL S ++ ++F P L +A G ++L+D
Sbjct: 86 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 145
Query: 133 ATWNL---IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFD 186
+W L + LSIP L+ F LS W P ++A +++ I ++
Sbjct: 146 RSWTLTSEMKVLSIPPANHLQ-------SDFCLS--WCPSRFSPEKLAVSALEQAI-IYQ 195
Query: 187 VTRAKFLH---HLEGHFMPVRSLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMS 240
+ LH L GH +RS+ ++P R ++ + D + ++ K ++ ++
Sbjct: 196 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLA 253
Query: 241 GHASWVLS--VDASPDGAAITTGSSD-RTVKLWDLNMRAAMQSMTNHTD---QVWGVSFR 294
S S D S D G SD T + +L ++ ++ H D +VW VS+
Sbjct: 254 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 313
Query: 295 PLGGRVVSVSDDKSISLYE 313
G + S DD + L++
Sbjct: 314 LTGTILSSAGDDGKVRLWK 332
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 52/319 (16%)
Query: 35 TGSLDETVKLWRPD----DMQLERTNTGHCLGVVSV--AAHPSGIIAASASLDSFVRVFD 88
T S D+ +K+++ D + +L + H +V++ A+ G I ASAS D V++++
Sbjct: 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
Query: 89 VDTNAS---------IATLEASPSEVWQMQFDPKGTTLAVAG-GGSASVKLWDT------ 132
D + + TL S ++ ++F P L +A G ++L+D
Sbjct: 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 133 ATWNL---IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG---RRIACGSMDGTISVFD 186
+W L + LSIP L+ F LS W P ++A +++ I ++
Sbjct: 148 RSWTLTSEMKVLSIPPANHLQ-------SDFCLS--WCPSRFSPEKLAVSALEQAI-IYQ 197
Query: 187 VTRAKFLH---HLEGHFMPVRSLVYSPVDPR---VLFSASDDTHVHMYDAEGKSLVTAMS 240
+ LH L GH +RS+ ++P R ++ + D + ++ K ++ ++
Sbjct: 198 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLA 255
Query: 241 GHASWVLS--VDASPDGAAITTGSSD-RTVKLWDLNMRAAMQSMTNHTD---QVWGVSFR 294
S S D S D G SD T + +L ++ ++ H D +VW VS+
Sbjct: 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315
Query: 295 PLGGRVVSVSDDKSISLYE 313
G + S DD + L++
Sbjct: 316 LTGTILSSAGDDGKVRLWK 334
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
H++ + ++W LL+ S D TV LW P + ++ + TGH V
Sbjct: 177 GHQKEGYGLSW---NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
VA H + S + D + ++D +N + ++A +EV + F+P +
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
G +V LWD R LK S K + V WSP I A D
Sbjct: 294 GSADKTVALWDL------------RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
++V+D+++ F+H GH + ++P +P V+ S S+D
Sbjct: 342 RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDN 399
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA---MSGHASWVLSVDASPD 254
GH V + + + + S +DD + ++D + + H + V + +P
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 255 GAAI-TTGSSDRTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISL 311
I TGS+D+TV LWDL N++ + + +H D+++ V + P +++ S D+ +++
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 312 YEYS 315
++ S
Sbjct: 347 WDLS 350
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTAMSGHASWV 246
T +K H ++ H V L ++P +L + S D V ++D L + H +
Sbjct: 263 TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Query: 247 LSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305
V SP I S +DR + +WDL+ QS + D + F GG +SD
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH-GGHTAKISD 381
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 173 IACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-- 229
+A GS D T++++D+ K LH E H + + +SP + +L S+ D ++++D
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 230 --AEGKS----------LVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDL 272
E +S L+ GH + + +P+ I + S D +++W +
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-RTNTGHCLGVVSVAAH 69
+AH V +++ P +E +L TGS D+TV LW +++L+ T H + V
Sbjct: 272 DAHTAEVNCLSFNPYSE---FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 70 PSG-IIAASASLDSFVRVFD---VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
P I AS+ D + V+D + S E P E+ L + GG +A
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL-----------LFIHGGHTA 377
Query: 126 SV 127
+
Sbjct: 378 KI 379
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 45/240 (18%)
Query: 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWR----PDDMQL---ERTNTGHCLGVV 64
H++ + ++W LL+ S D TV LW P + ++ + TGH V
Sbjct: 177 GHQKEGYGLSW---NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQMQFDPKGTTLAVA 120
VA H + S + D + ++D +N + ++A +EV + F+P +
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMD 179
G +V LWD R LK S K + V WSP I A D
Sbjct: 294 GSADKTVALWDL------------RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Query: 180 GTISVFDVTRAK----------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223
++V+D+++ F+H GH + ++P +P V+ S S+D
Sbjct: 342 RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDN 399
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA---MSGHASWVLSVDASPD 254
GH V + + + + S +DD + ++D + + H + V + +P
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 255 GAAI-TTGSSDRTVKLWDL-NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKSISL 311
I TGS+D+TV LWDL N++ + + +H D+++ V + P +++ S D+ +++
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 312 YEYS 315
++ S
Sbjct: 347 WDLS 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 179 DGTISVFDV---TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL 235
D + ++D T +K H ++ H V L ++P +L + S D V ++D L
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 236 -VTAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293
+ H + V SP I S +DR + +WDL+ QS + D + F
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 294 RPLGGRVVSVSD 305
GG +SD
Sbjct: 371 I-HGGHTAKISD 381
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 173 IACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 229
+A GS D T++++D+ K LH E H + + +SP + +L S+ D ++++D
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-RTNTGHCLGVVSVAAH 69
+AH V +++ P +E +L TGS D+TV LW +++L+ T H + V
Sbjct: 272 DAHTAEVNCLSFNPYSE---FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 70 PSG-IIAASASLDSFVRVFD---VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA 125
P I AS+ D + V+D + S E P E+ L + GG +A
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL-----------LFIHGGHTA 377
Query: 126 SV 127
+
Sbjct: 378 KI 379
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76 ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
A+ S D +++F+V+ T+ I TL VW++ + PK T+ + V +W
Sbjct: 27 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
+ W+ IA ++ S+S V SV W+P G + S DG +SV +
Sbjct: 87 ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
T + + ++ H + V S ++P + R + D V ++
Sbjct: 134 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLN-----MRAAMQS 280
DA+ L + + GH+ WV V SP + + + S DRT +W + + +
Sbjct: 192 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
D +W S+ L G V+++S D ++L++
Sbjct: 252 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 284
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 170 GRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYS-PVDPRVLFSASDDTHVH 226
G+R+A S D TI +F+V K + L GH PV + ++ P +L S S D V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 227 MYDAEGK--SLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTVKL 269
++ E S + + H++ V SV +P G + SSD V +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 132 TATWNLIATLSIPRPEGLKPTDKSS--------SKKFVLSVAWSPDGRRIACGSMDGTIS 183
T WN+I+ + E LK T SS + V W D + + G G I
Sbjct: 173 TILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIF 230
Query: 184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243
V+ +T L GH P+ L ++ + ++L SASDD + ++ + GH+
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289
Query: 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278
++S D I+ S D +V+LW L +
Sbjct: 290 QSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLL 323
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 74 IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133
I +S LD FV++ I L+ S W +P ++ G ++ +L
Sbjct: 26 IDSSDDLDGFVKIL-----KEIVKLDNIVSSTW----NPLDESILAYGEKNSVARLARIV 76
Query: 134 T--------WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185
W L + P L + ++ + V +AWS DG I G +G + ++
Sbjct: 77 ETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQ-VTCLAWSHDGNSIVTGVENGELRLW 135
Query: 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236
+ T A L+ L H P+ S+ ++ D TH+ D E +++
Sbjct: 136 NKTGA-LLNVLNFHRAPIVSVKWNK----------DGTHIISMDVENVTIL 175
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 17/155 (10%)
Query: 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91
LLL+ S D T+++W + + GH +VS A+ S S+D VR++ +
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS-ASWVGDDKVISCSMDGSVRLWSLKQ 319
Query: 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN------------LIA 139
N +A ++ + G AVA V ++D N ++
Sbjct: 320 NTLLALSIVDGVPIFAGRISQDGQKYAVA-FMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378
Query: 140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA 174
L IP + S ++ ++W+ G +I+
Sbjct: 379 PLPIPLYASYQ---SSQDNDYIFDLSWNCAGNKIS 410
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFM-----PVRSLVYSPVD 212
+F SV S G IA G +GT+ + +++ + L++ E H M +RS+ +SP
Sbjct: 197 QFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 255
Query: 213 PRVLFSASDDTH--VHMYDAEGKSLVTAMS-------------GHASWVLSVDASPDGAA 257
+ + ++ + +Y+ E + ++S H+SWV+S+ + G
Sbjct: 256 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 315
Query: 258 ITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV 288
+ + D ++ WD+ + + ++ H D +
Sbjct: 316 LCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 108 MQFDPKGTTLAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165
++F P+G+ LA+A ++ + L++T I +LS+P + + +V+S++
Sbjct: 249 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 308
Query: 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH 199
++ G + DG + +DV + + L H
Sbjct: 309 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFM-----PVRSLVYSPVD 212
+F SV S G IA G +GT+ + +++ + L++ E H M +RS+ +SP
Sbjct: 187 QFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245
Query: 213 PRVLFSASDDTH--VHMYDAEGKSLVTAMS-------------GHASWVLSVDASPDGAA 257
+ + ++ + +Y+ E + ++S H+SWV+S+ + G
Sbjct: 246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 305
Query: 258 ITTGSSDRTVKLWDLNMRAAMQSMTNHTDQV 288
+ + D ++ WD+ + + ++ H D +
Sbjct: 306 LCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 108 MQFDPKGTTLAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165
++F P+G+ LA+A ++ + L++T I +LS+P + + +V+S++
Sbjct: 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298
Query: 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH 199
++ G + DG + +DV + + L H
Sbjct: 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 52/274 (18%)
Query: 76 ASASLDSFVRVFDVD--TNASIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLW-- 130
A+ S D +++F+V+ T+ I TL VW++ + PK T+ + V +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84
Query: 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDV- 187
+ W+ IA ++ S+S V SV W+P G + S DG +SV +
Sbjct: 85 ENGRWSQIAVHAV----------HSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 188 ---TRAKFLHHLEGHFMPVRSLVYSPV------------DPRVLFSASDDTHVHMY---- 228
T + + ++ H + V S ++P + R + D V ++
Sbjct: 132 ENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 229 DAEGKSLVTAMSGHASWVLSVDASPD---GAAITTGSSDRTVKLWDLNM-----RAAMQS 280
DA+ L + + GH+ WV V SP + + + S DRT +W + + +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 281 MTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYE 313
D +W S+ L G V+++S D ++L++
Sbjct: 250 EEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWK 282
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 170 GRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYS-PVDPRVLFSASDDTHVH 226
G+R+A S D TI +F+V K + L GH PV + ++ P +L S S D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 227 MYDAEGK--SLVTAMSGHASWVLSVDASPD--GAAITTGSSDRTV 267
++ E S + + H++ V SV +P G + SSD V
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 106/256 (41%), Gaps = 50/256 (19%)
Query: 49 DMQLERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTNA--SIATLEASPS-- 103
D +ER + G G+ ++ P G S D + ++D++ ++ S T +A S
Sbjct: 35 DRDVERIHGG---GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG 91
Query: 104 ---------EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK 154
V +Q+ P T + + ++K+WDT T L+ D
Sbjct: 92 RDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------------LQTADV 137
Query: 155 SSSKKFVLSVAWSPDGRR---IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
+ ++ V S SP + +A G+ + + D+ H L+GH + ++ +SP
Sbjct: 138 FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197
Query: 212 DPRVLFSASDDTHVHMYDA----------------EGKSLVTAMSGHASWVLSVDASPDG 255
+L +AS D+ V ++D + +++ +A + H V + + DG
Sbjct: 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257
Query: 256 AAITTGSSDRTVKLWD 271
+ T +D ++LW+
Sbjct: 258 LHLLTVGTDNRMRLWN 273
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 97/268 (36%), Gaps = 47/268 (17%)
Query: 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD------TAT 134
+S RV ++ N + + +P ++GG + L+D +
Sbjct: 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY 81
Query: 135 WNLIATLSIPRPEGLKPTDKSSSKKF-VLSVAWSP-DGRRIACGSMDGTISVFDVTRAK- 191
+ A SI R D ++ V +V W P D S D T+ V+D +
Sbjct: 82 YTCKAVCSIGR-------DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134
Query: 192 -----FLHHLEGHFMPVRSLVYSPVDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHAS 244
F + H M SPV + A + V + D + S + GH
Sbjct: 135 ADVFNFEETVYSHHM-------SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187
Query: 245 WVLSVDASPDGAAI-TTGSSDRTVKLWDLNM----------------RAAMQSMTNHTDQ 287
+L+V SP I T S+D VKLWD+ +A + T H +
Sbjct: 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247
Query: 288 VWGVSFRPLGGRVVSVSDDKSISLYEYS 315
V G+ F G +++V D + L+ S
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
F + ++ AH + + + P+ E L++ S D +K+W D RT GH
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEA----LISSSQDMQLKIWSVKDGSNPRTLIGHRA 179
Query: 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL 98
V +A G SASLD +R+++ T +I T
Sbjct: 180 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
++V D + N +A SE+ +++F P G L ++ +K+W
Sbjct: 118 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSV----------- 165
Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPV 203
+G P + V +A GR + S+DGTI +++ +H P
Sbjct: 166 --KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP- 222
Query: 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-------AMSGHASWVLSV 249
+ V+ LF + D +H K+ + ++GH S V++V
Sbjct: 223 ----HDGVNSIALFVGT-DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV 270
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
RR G+ +G I V D + H + L + P L S+S D + ++
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSV 165
Query: 231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
+ S + GH + V + G + + S D T++LW+
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
H S + + P G A+ + S D +K+W + + +++ H V ++ G V+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 302 SVSDDKSISLYE 313
S S D +I L+E
Sbjct: 195 SASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL 61
F + ++ AH + + + P+ E L++ S D +K+W D RT GH
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEA----LISSSQDMQLKIWSVKDGSNPRTLIGHRA 182
Query: 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL 98
V +A G SASLD +R+++ T +I T
Sbjct: 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143
++V D + N +A SE+ +++F P G L ++ +K+W
Sbjct: 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSV----------- 168
Query: 144 PRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPV 203
+G P + V +A GR + S+DGTI +++ +H P
Sbjct: 169 --KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP- 225
Query: 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-------AMSGHASWVLSV 249
+ V+ LF + D +H K+ + ++GH S V++V
Sbjct: 226 ----HDGVNSIALFVGT-DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV 273
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
RR G+ +G I V D + H + L + P L S+S D + ++
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSV 168
Query: 231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271
+ S + GH + V + G + + S D T++LW+
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV 301
H S + + P G A+ + S D +K+W + + +++ H V ++ G V+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 302 SVSDDKSISLYE 313
S S D +I L+E
Sbjct: 198 SASLDGTIRLWE 209
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279
G+++ A H VL V S DG+ + T S D+T K+WDL+ A+Q
Sbjct: 75 GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ 122
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 199 HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD--ASPDGA 256
H PV + +S D +F+AS D M+D + ++ H + V ++ +P+ +
Sbjct: 85 HTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYS 142
Query: 257 AITTGSSDRTVKLWD 271
+ TGS D+T+K WD
Sbjct: 143 CVMTGSWDKTLKFWD 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Query: 170 GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 229
G + GS D I V+D+ + L H V + SP V S S+D + ++D
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 230 AEGKSLVTAMSGHASWVL--SVDASPDGAAI-TTGSSDRTVKLWDLNMRAAMQSMTNHTD 286
+ + A L S+ P + + G + TV L D + + S H+
Sbjct: 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ 258
Query: 287 QVWGVSFRPLG-GRVVSVSDDKSISLYEYS 315
V G+ F P + S+S+D S+++ + S
Sbjct: 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 211 VDPRVLFSASDDTHVHMYDA-EGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRT 266
V R + ASD V +++ E ++L+ H V +V G +GS D
Sbjct: 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC 150
Query: 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV-VSVSDDKSISLYE 313
+K+WDL + + S H QV V+ P V +S S+D I L++
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 29/154 (18%)
Query: 179 DGTISVFDVTRAKF-----LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK 233
DG++ + KF HH +G F VR + +SP + + D + +D +
Sbjct: 182 DGSVVFYQGPPFKFSASDRTHHKQGSF--VRDVEFSPDSGEFVITVGSDRKISCFDGK-- 237
Query: 234 SLVTAMSGHASWVLSVDASP-----------DGAAITTGSSDRTVKLWDLNMRAAMQSMT 282
SG + D P D T +D T+++WD+ +Q T
Sbjct: 238 ------SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 291
Query: 283 NHTDQVWGVSFRPL---GGRVVSVSDDKSISLYE 313
Q+ + GR++S+S D +++ YE
Sbjct: 292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 325
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181
G A++++WD T + ++ DK + V + +GR I+ S+DGT
Sbjct: 271 GADATIRVWDVTTSKCVQKWTL---------DKQQLGNQQVGVVATGNGRIISL-SLDGT 320
Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241
++ +++ + L + GH + +L +P L S S D + + + +
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS-----SMHQD 370
Query: 242 HASWVLSVDAS 252
H++ ++S+D S
Sbjct: 371 HSNLIVSLDNS 381
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 32/231 (13%)
Query: 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP------------- 102
++G+ LG VS H I A +R V + S+ + P
Sbjct: 148 DSGNSLGEVS--GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 103 -SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161
S V ++F P + G + +D + + + D+ + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---------DDQEPVQGGI 256
Query: 162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSA 219
+++W D ++ A D TI V+DVT +K + L+ + + + + S
Sbjct: 257 FALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315
Query: 220 SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW 270
S D ++ Y+ ++ +SGH + ++ +P + +GS D + W
Sbjct: 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 29/154 (18%)
Query: 179 DGTISVFDVTRAKF-----LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK 233
DG++ + KF HH +G F VR + +SP + + D + +D +
Sbjct: 182 DGSVVFYQGPPFKFSASDRTHHKQGSF--VRDVEFSPDSGEFVITVGSDRKISCFDGK-- 237
Query: 234 SLVTAMSGHASWVLSVDASP-----------DGAAITTGSSDRTVKLWDLNMRAAMQSMT 282
SG + D P D T +D T+++WD+ +Q T
Sbjct: 238 ------SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 291
Query: 283 NHTDQVWGVSFRPL---GGRVVSVSDDKSISLYE 313
Q+ + GR++S+S D +++ YE
Sbjct: 292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 325
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181
G A++++WD T + ++ DK + V + +GR I+ S+DGT
Sbjct: 271 GADATIRVWDVTTSKCVQKWTL---------DKQQLGNQQVGVVATGNGRIISL-SLDGT 320
Query: 182 ISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211
++ +++ + L + GH + +L +P+
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNPL 350
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 16/180 (8%)
Query: 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152
AS T S V ++F P + G + +D + + +
Sbjct: 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---------D 247
Query: 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSP 210
D+ + + +++W D ++ A D TI V+DVT +K + L+ + + +
Sbjct: 248 DQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306
Query: 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLW 270
+ S S D ++ Y+ ++ +SGH + ++ +P + +GS D + W
Sbjct: 307 TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 72 GIIAASASLDSFVRVFDVDTNASI--ATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVK 128
G A+ S D V++FDV I A L VWQ+ + P + + V
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 129 LW--DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISV 184
+W + TW K + + V SV W+P G +ACGS DG IS+
Sbjct: 85 IWREENGTWE-------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Query: 185 FDVT 188
T
Sbjct: 132 LTYT 135
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 6 LKSVENAHEESVWAVTWVPA----------TETRPALL---LTGSLDETVKLWRPDD--- 49
+K + NAH AV+W PA + +P + +G D +KLW+ ++
Sbjct: 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ 201
Query: 50 MQLERTNTGHCLGVVSVAAHPS-GI---IAASASLDSFVRVFDVDTNASIA----TLEAS 101
+ E+ H V VA PS G+ AS S D V ++ D +S L
Sbjct: 202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261
Query: 102 PSEVWQMQFDPKGTTLAVAGGGSASVKLW 130
VW + + LAV+GG + V LW
Sbjct: 262 NDVVWHVSWSITANILAVSGGDN-KVTLW 289
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 255 GAAITTGSSDRTVKLWDLNM--RAAMQSMTNHTDQVWGVSF-RPLGGRVV-SVSDDKSIS 310
G + T SSDR+VK++D+ + + + H VW V++ P+ G ++ S S D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 311 LY 312
++
Sbjct: 85 IW 86
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDL 272
R++ + + +V + + +GK L + H V V +P + T S D+TVK+WDL
Sbjct: 222 RMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
Query: 273 NM---RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+A+ H V F P G R+++ I +Y S
Sbjct: 281 RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 20/220 (9%)
Query: 68 AHPSGIIAA---SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124
+H + IIA + SL+ + + S+A S V ++F+ K + +GG +
Sbjct: 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN 135
Query: 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTIS 183
+ +WD T S L P SS V+S+AW+ A S
Sbjct: 136 GEIFIWDMNK----CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191
Query: 184 VFDVTRAKFLHHL------EGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGKS 234
++D+ K + HL G + + + P + + +A+ +D + ++D +
Sbjct: 192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251
Query: 235 --LVTAMSGHASWVLSVD-ASPDGAAITTGSSDRTVKLWD 271
L T GH +LS+D D + + D TV LW+
Sbjct: 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 20 VTWVPATETRPALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSVA-AHPSGIIAA 76
V W P TR A D ++ +W R + L+ N GH G++S+ H +
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL 117
S+ D+ V +++ ++ ++ A + ++ +F P+ L
Sbjct: 280 SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ 51
L+++ H++ + ++ W E LLL+ D TV LW P+ +
Sbjct: 254 LQTLNQGHQKGILSLDWCHQDE---HLLLSSGRDNTVLLWNPESAE 296
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDL 272
R++ + + +V + + +GK L + H V V +P + T S D+TVK+WDL
Sbjct: 222 RMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
Query: 273 NM---RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+A+ H V F P G R+++ I +Y S
Sbjct: 281 RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 221 DDTHVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275
++ VH+Y+ G V + H V VD +PD I T +DR +W L R
Sbjct: 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 38/146 (26%)
Query: 63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
V+S+ HP+ ++ A+ S D R+F +A I +E P+ P G+ +
Sbjct: 145 VLSLDWHPNSVLLAAGSCDFKCRIF----SAYIKEVEERPAPT------PWGSKM----- 189
Query: 123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182
P G + SSS +V V +S +G R+A S D T+
Sbjct: 190 -----------------------PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
Query: 183 SVFDVTRAKFLHHLEGHFMPVRSLVY 208
+ D + + L +P+ ++ +
Sbjct: 227 CLADADKKMAVATLASETLPLLAVTF 252
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDL 272
R++ + + +V + + +GK L + H V V +P + T S D+TVK+WDL
Sbjct: 223 RMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
Query: 273 NM---RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315
+A+ H V F P G R+++ I +Y S
Sbjct: 282 RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 221 DDTHVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275
++ VH+Y+ G V + H V +D +PD I T +DR +W L R
Sbjct: 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGR 84
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 38/146 (26%)
Query: 63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG 122
V+S+ HP+ ++ A+ S D R+F +A I +E P+ P G+ +
Sbjct: 145 VLSLDWHPNSVLLAAGSCDFKCRIF----SAYIKEVEERPAPT------PWGSKM----- 189
Query: 123 GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182
P G + SSS +V V +S +G R+A S D T+
Sbjct: 190 -----------------------PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
Query: 183 SVFDVTRAKFLHHLEGHFMPVRSLVY 208
+ D + + L +P+ ++ +
Sbjct: 227 CLADADKKMAVATLASETLPLLAVTF 252
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN----TGHCL 61
+++++NA ++ AVT++ P +L S+ + +K+W E + TG +
Sbjct: 183 VRTIDNADSSTLHAVTFLRT----PEILTVNSIGQ-LKIWDFRQQGNEPSQILSLTGDRV 237
Query: 62 GVVSVAAHPSGI-IAASASLDSFVRVFDVDTNA-SIATLEASPSEVWQMQFDPKGTTLAV 119
+ V HP+ + A+ D + ++DV ++ L+A +E+W++ F P
Sbjct: 238 PLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLF 297
Query: 120 AGGGSASVKLWDTAT 134
S+ WD +T
Sbjct: 298 TCSEDGSLWHWDAST 312
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 25/177 (14%)
Query: 60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE-ASPSEVWQMQFDPKGTTLA 118
C GVV +P + D + +F D ++ T++ A S + + F L
Sbjct: 153 CTGVV--CNNPEIVTVGE---DGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILT 207
Query: 119 VAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS---SKKFVLSVAWSPDGRRI-A 174
V G +K+WD R +G +P+ S + + V P+ + + A
Sbjct: 208 VNSIGQ--LKIWDF------------RQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVA 253
Query: 175 CGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230
G DG +S++DV + + L+ H + + + P +P LF+ S+D + +DA
Sbjct: 254 TGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDA 310
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN 136
S+ S + FDV T ++ A + P ++ D G + + + +
Sbjct: 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182
IA L + E +K S V SV WSP G+++A G +GT+
Sbjct: 173 SIAVLQVT--ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN 136
S+ S + FDV T ++ A + P ++ D G + + + +
Sbjct: 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182
IA L + E +K S V SV WSP G+++A G +GT+
Sbjct: 173 SIAVLQVT--ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|1WCL|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of
Escherichia Coli Nusa
Length = 76
Score = 31.2 bits (69), Expect = 0.78, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135
A A++D+F + D+D + + +E S + ++ + P L + G +V+
Sbjct: 2 AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 61
Query: 136 NLIATLSIPRPEGL 149
N +AT++ + E L
Sbjct: 62 NALATIAQAQEESL 75
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN 136
S+ S + FDV T ++ A + P ++ D G + + + +
Sbjct: 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172
Query: 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182
IA L + E +K S V SV WSP G+++A G +GT+
Sbjct: 173 SIAVLQVT--ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|1U9L|A Chain A, Structural Basis For A Nusa- Protein N Interaction
pdb|1U9L|B Chain B, Structural Basis For A Nusa- Protein N Interaction
Length = 70
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%)
Query: 76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135
A A++D+F + D+D + + +E S + ++ + P L + G +V+
Sbjct: 1 AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60
Query: 136 NLIATLS 142
N +AT++
Sbjct: 61 NALATIA 67
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157
++A + V ++ + KG +A ++++ T L+ E + D++S
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVR-------EFRRGLDRTS- 226
Query: 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDV 187
++ + WSPDG ++A S T+ VF+V
Sbjct: 227 ---IIDMRWSPDGSKLAVVSDKWTLHVFEV 253
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 157 SKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVTRAKFLHHL----EGHFM-PVRSL 206
+KF+ +++WSPD + + + ++ +D +F+ L + H++ P+ L
Sbjct: 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315
Query: 207 VYSP-VDPRVLFSASDD--THVHMYDAEGKSLVTAMSG 241
+ P + + ++ + D H+++YD G+ + G
Sbjct: 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 157 SKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVTRAKFLHHL----EGHFM-PVRSL 206
+KF+ +++WSPD + + + ++ +D +F+ L + H++ P+ L
Sbjct: 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315
Query: 207 VYSP-VDPRVLFSASDD--THVHMYDAEGKSLVTAMSG 241
+ P + + ++ + D H+++YD G+ + G
Sbjct: 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 157 SKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVTRAKFLHHL----EGHFM-PVRSL 206
+KF+ +++WSPD + + + ++ +D +F+ L + H++ P+ L
Sbjct: 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315
Query: 207 VYSP-VDPRVLFSASDD--THVHMYDAEGKSLVTAMSG 241
+ P + + ++ + D H+++YD G+ + G
Sbjct: 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353
>pdb|1TZB|A Chain A, Crystal Structure Of Native Phosphoglucose/phosphomannose
Isomerase From Pyrobaculum Aerophilum
pdb|1TZB|B Chain B, Crystal Structure Of Native Phosphoglucose/phosphomannose
Isomerase From Pyrobaculum Aerophilum
pdb|1TZC|A Chain A, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
5-Phosphoarabinonate
pdb|1TZC|B Chain B, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
5-Phosphoarabinonate
pdb|1X9H|A Chain A, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
Fructose 6-Phosphate
pdb|1X9H|B Chain B, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
Fructose 6-Phosphate
pdb|1X9I|A Chain A, Crystal Structure Of Crystal Structure Of
PhosphoglucosePHOSPHOMANNOSE
PHOSPHOGLUCOSEPHOSPHOMANNOSEISOMERASE From Pyrobaculum
Aerophilum In Complex With Glucose 6-Phosphate
pdb|1X9I|B Chain B, Crystal Structure Of Crystal Structure Of
PhosphoglucosePHOSPHOMANNOSE
PHOSPHOGLUCOSEPHOSPHOMANNOSEISOMERASE From Pyrobaculum
Aerophilum In Complex With Glucose 6-Phosphate
Length = 302
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 96 ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150
AT+E ++ ++ PKG + G ASVKL + N +AT PR + LK
Sbjct: 247 ATVEIVGGSIYAVEMHPKGVLSFLRDVGIASVKLAEIRGVNPLAT---PRIDALK 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,679,781
Number of Sequences: 62578
Number of extensions: 383621
Number of successful extensions: 2292
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 517
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)