Query 021247
Match_columns 315
No_of_seqs 217 out of 1730
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-54 1.6E-58 340.4 23.8 291 4-313 165-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 3.2E-53 6.9E-58 333.2 25.1 285 9-313 152-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.9E-52 6.4E-57 327.7 26.6 289 8-314 109-438 (480)
4 KOG0286 G-protein beta subunit 100.0 7.9E-47 1.7E-51 287.5 31.4 289 5-313 46-343 (343)
5 KOG0279 G protein beta subunit 100.0 1.6E-45 3.4E-50 278.7 32.0 292 4-314 5-312 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-47 2.4E-52 305.3 19.1 253 3-271 206-458 (459)
7 KOG0265 U5 snRNP-specific prot 100.0 1.8E-44 4E-49 275.5 28.2 288 8-314 41-337 (338)
8 KOG0295 WD40 repeat-containing 100.0 1.1E-44 2.4E-49 283.3 25.5 288 8-313 102-404 (406)
9 KOG0315 G-protein beta subunit 100.0 3E-43 6.4E-48 262.4 28.4 270 29-315 9-288 (311)
10 KOG0284 Polyadenylation factor 100.0 2.5E-45 5.4E-50 290.8 18.0 282 14-314 96-379 (464)
11 KOG0273 Beta-transducin family 100.0 3.9E-41 8.5E-46 271.4 30.6 280 14-314 235-522 (524)
12 KOG0266 WD40 repeat-containing 100.0 5.9E-41 1.3E-45 291.0 33.4 286 11-315 156-454 (456)
13 cd00200 WD40 WD40 domain, foun 100.0 4E-40 8.8E-45 270.7 36.4 286 9-313 4-289 (289)
14 KOG0273 Beta-transducin family 100.0 1.9E-41 4E-46 273.3 26.7 285 9-314 174-481 (524)
15 KOG0285 Pleiotropic regulator 100.0 2.2E-41 4.8E-46 264.5 25.8 287 6-313 143-437 (460)
16 KOG0282 mRNA splicing factor [ 100.0 9.4E-43 2E-47 281.6 18.7 287 9-313 209-503 (503)
17 KOG0319 WD40-repeat-containing 100.0 7.4E-41 1.6E-45 283.1 27.9 294 10-313 319-617 (775)
18 KOG0318 WD40 repeat stress pro 100.0 5.6E-39 1.2E-43 262.3 34.1 300 11-315 144-560 (603)
19 KOG0263 Transcription initiati 100.0 7.6E-41 1.7E-45 285.2 23.6 270 15-314 379-648 (707)
20 KOG0279 G protein beta subunit 100.0 8.3E-40 1.8E-44 247.7 26.3 244 10-273 59-313 (315)
21 KOG0296 Angio-associated migra 100.0 2.3E-39 5E-44 253.6 28.7 285 11-315 61-398 (399)
22 KOG0286 G-protein beta subunit 100.0 3.8E-39 8.1E-44 245.7 28.8 254 52-314 47-302 (343)
23 KOG0645 WD40 repeat protein [G 100.0 1.5E-38 3.1E-43 240.0 31.7 293 1-314 1-310 (312)
24 KOG0293 WD40 repeat-containing 100.0 2.4E-40 5.2E-45 263.0 22.8 291 5-315 215-513 (519)
25 PLN00181 protein SPA1-RELATED; 100.0 1.8E-38 3.9E-43 294.4 39.0 283 11-314 480-792 (793)
26 KOG0276 Vesicle coat complex C 100.0 1.2E-39 2.6E-44 271.2 27.4 290 4-311 3-295 (794)
27 KOG0291 WD40-repeat-containing 100.0 1.5E-38 3.3E-43 269.8 32.6 283 14-314 307-611 (893)
28 KOG0281 Beta-TrCP (transducin 100.0 7.4E-41 1.6E-45 260.9 16.4 272 13-314 196-476 (499)
29 KOG0284 Polyadenylation factor 100.0 2.3E-40 4.9E-45 262.7 16.8 251 4-273 128-380 (464)
30 KOG0263 Transcription initiati 100.0 2.4E-39 5.2E-44 276.1 23.9 250 33-297 424-697 (707)
31 KOG0316 Conserved WD40 repeat- 100.0 2.6E-38 5.6E-43 234.4 25.3 279 9-309 12-294 (307)
32 KOG0292 Vesicle coat complex C 100.0 2.5E-38 5.4E-43 272.7 26.8 284 12-315 7-321 (1202)
33 KOG0319 WD40-repeat-containing 100.0 9.2E-39 2E-43 270.4 22.5 301 10-315 101-535 (775)
34 KOG0313 Microtubule binding pr 100.0 3.2E-38 6.9E-43 248.4 24.0 291 12-314 103-417 (423)
35 KOG0306 WD40-repeat-containing 100.0 6.2E-38 1.3E-42 265.9 27.4 293 10-314 369-663 (888)
36 KOG0643 Translation initiation 100.0 1.7E-37 3.7E-42 233.9 25.2 286 9-314 5-316 (327)
37 KOG0291 WD40-repeat-containing 100.0 3.3E-36 7.1E-41 255.7 34.5 298 11-314 142-507 (893)
38 KOG0285 Pleiotropic regulator 100.0 9.8E-38 2.1E-42 244.1 23.1 247 51-314 142-388 (460)
39 KOG0315 G-protein beta subunit 100.0 1.2E-36 2.7E-41 227.1 27.5 261 14-294 40-309 (311)
40 KOG0295 WD40 repeat-containing 100.0 8.2E-38 1.8E-42 244.8 20.5 247 54-315 102-364 (406)
41 KOG0278 Serine/threonine kinas 100.0 3.5E-37 7.6E-42 230.3 17.6 295 1-314 1-296 (334)
42 KOG0277 Peroxisomal targeting 100.0 6.7E-36 1.5E-40 223.8 22.7 285 16-314 10-308 (311)
43 KOG0288 WD40 repeat protein Ti 100.0 1.5E-36 3.2E-41 241.4 17.7 283 8-313 169-459 (459)
44 KOG0275 Conserved WD40 repeat- 100.0 1.2E-36 2.7E-41 235.6 16.8 286 10-313 209-507 (508)
45 KOG0268 Sof1-like rRNA process 100.0 1.2E-36 2.6E-41 238.3 16.3 279 10-313 62-343 (433)
46 KOG0281 Beta-TrCP (transducin 100.0 8.7E-37 1.9E-41 238.2 14.1 229 59-314 196-427 (499)
47 KOG0318 WD40 repeat stress pro 100.0 1.1E-33 2.4E-38 231.4 32.6 288 8-315 53-350 (603)
48 KOG0277 Peroxisomal targeting 100.0 1.4E-35 3E-40 222.1 19.8 244 13-272 59-308 (311)
49 KOG0276 Vesicle coat complex C 100.0 5.1E-35 1.1E-39 243.8 25.0 246 54-313 7-255 (794)
50 KOG0266 WD40 repeat-containing 100.0 2.5E-34 5.3E-39 249.7 29.8 242 59-315 158-409 (456)
51 KOG0316 Conserved WD40 repeat- 100.0 1.2E-34 2.7E-39 214.8 23.7 243 53-314 10-256 (307)
52 KOG1407 WD40 repeat protein [F 100.0 8.3E-34 1.8E-38 213.4 27.1 284 9-314 15-310 (313)
53 KOG0305 Anaphase promoting com 100.0 3.7E-34 8.1E-39 240.0 27.9 267 32-315 190-461 (484)
54 KOG0274 Cdc4 and related F-box 100.0 3.6E-34 7.7E-39 248.4 28.4 273 13-315 207-482 (537)
55 PLN00181 protein SPA1-RELATED; 100.0 1.4E-33 3E-38 261.9 33.8 260 39-314 457-737 (793)
56 cd00200 WD40 WD40 domain, foun 100.0 4.5E-33 9.8E-38 228.8 33.1 246 54-314 3-248 (289)
57 KOG0647 mRNA export protein (c 100.0 8.7E-34 1.9E-38 217.4 26.0 277 9-306 22-315 (347)
58 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-32 3.3E-37 212.1 32.2 288 3-313 3-301 (311)
59 KOG0313 Microtubule binding pr 100.0 7.3E-34 1.6E-38 223.9 24.4 247 9-273 139-418 (423)
60 KOG0289 mRNA splicing factor [ 100.0 1.7E-33 3.7E-38 225.3 26.5 283 15-314 220-505 (506)
61 KOG0310 Conserved WD40 repeat- 100.0 8.3E-34 1.8E-38 230.2 25.0 276 15-311 27-305 (487)
62 KOG0772 Uncharacterized conser 100.0 9.7E-34 2.1E-38 231.4 23.1 291 10-312 163-484 (641)
63 KOG0265 U5 snRNP-specific prot 100.0 2.1E-33 4.5E-38 215.1 23.5 244 55-314 42-295 (338)
64 KOG0292 Vesicle coat complex C 100.0 6.2E-33 1.3E-37 239.6 29.1 256 11-273 48-321 (1202)
65 KOG0282 mRNA splicing factor [ 100.0 1.1E-34 2.5E-39 234.9 16.4 248 52-315 206-462 (503)
66 PTZ00420 coronin; Provisional 100.0 8.9E-32 1.9E-36 234.3 33.7 247 35-297 49-318 (568)
67 KOG0645 WD40 repeat protein [G 100.0 1.4E-31 3E-36 202.5 30.1 241 53-314 7-260 (312)
68 KOG0283 WD40 repeat-containing 100.0 1.3E-32 2.7E-37 237.0 25.5 239 58-314 265-575 (712)
69 PTZ00421 coronin; Provisional 100.0 1.6E-31 3.5E-36 231.5 32.5 267 12-296 18-314 (493)
70 KOG0296 Angio-associated migra 100.0 5.8E-32 1.2E-36 212.2 26.8 256 10-273 102-398 (399)
71 KOG1036 Mitotic spindle checkp 100.0 1.6E-31 3.5E-36 205.5 27.8 272 9-305 8-294 (323)
72 KOG0640 mRNA cleavage stimulat 100.0 1.2E-32 2.5E-37 212.2 21.4 288 10-313 108-424 (430)
73 KOG0283 WD40 repeat-containing 100.0 1.4E-32 3E-37 236.7 24.0 244 10-273 263-576 (712)
74 KOG0293 WD40 repeat-containing 100.0 6.6E-33 1.4E-37 220.8 19.3 247 7-273 262-513 (519)
75 KOG0301 Phospholipase A2-activ 100.0 9.5E-32 2.1E-36 226.7 25.2 283 1-314 1-287 (745)
76 KOG1407 WD40 repeat protein [F 100.0 7.8E-32 1.7E-36 202.8 21.8 243 54-312 14-258 (313)
77 KOG0274 Cdc4 and related F-box 100.0 2.3E-31 5.1E-36 230.9 26.0 256 10-293 245-503 (537)
78 KOG0308 Conserved WD40 repeat- 100.0 5.7E-32 1.2E-36 226.5 20.2 277 31-313 38-325 (735)
79 KOG0973 Histone transcription 100.0 1.6E-30 3.4E-35 229.6 29.3 286 11-315 10-355 (942)
80 KOG0306 WD40-repeat-containing 100.0 5E-30 1.1E-34 218.2 30.7 279 15-313 321-620 (888)
81 KOG0300 WD40 repeat-containing 100.0 5E-31 1.1E-35 204.0 21.8 289 4-314 138-475 (481)
82 KOG0641 WD40 repeat protein [G 100.0 4.9E-29 1.1E-33 184.4 30.3 282 14-315 32-349 (350)
83 KOG0294 WD40 repeat-containing 100.0 5.2E-30 1.1E-34 197.8 25.0 240 11-275 40-283 (362)
84 KOG0299 U3 snoRNP-associated p 100.0 4E-30 8.7E-35 207.5 25.4 280 7-308 135-449 (479)
85 PTZ00421 coronin; Provisional 100.0 5.9E-29 1.3E-33 215.6 32.2 247 61-314 21-289 (493)
86 KOG0310 Conserved WD40 repeat- 100.0 1.4E-29 2.9E-34 205.8 26.1 241 11-272 65-308 (487)
87 KOG0264 Nucleosome remodeling 100.0 3.1E-30 6.6E-35 207.9 22.0 249 11-273 121-404 (422)
88 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.3E-28 5E-33 203.2 34.1 267 31-315 2-279 (300)
89 KOG0643 Translation initiation 100.0 1.6E-29 3.4E-34 191.1 24.2 233 56-305 6-251 (327)
90 KOG0278 Serine/threonine kinas 100.0 9.4E-31 2E-35 196.0 14.7 244 11-277 56-301 (334)
91 KOG0264 Nucleosome remodeling 100.0 7.3E-30 1.6E-34 205.7 20.9 252 58-315 122-404 (422)
92 PTZ00420 coronin; Provisional 100.0 1.7E-28 3.7E-33 213.9 31.1 229 78-314 50-292 (568)
93 KOG1408 WD40 repeat protein [F 100.0 2.9E-29 6.2E-34 212.8 24.3 296 7-315 362-713 (1080)
94 KOG0973 Histone transcription 100.0 3.7E-29 8E-34 221.0 24.8 255 9-275 64-357 (942)
95 KOG0294 WD40 repeat-containing 100.0 3.4E-28 7.4E-33 187.8 25.4 242 54-315 37-281 (362)
96 KOG0268 Sof1-like rRNA process 100.0 3.5E-30 7.5E-35 202.2 14.2 239 55-314 61-301 (433)
97 KOG0308 Conserved WD40 repeat- 100.0 1.2E-29 2.6E-34 212.7 18.2 243 59-314 20-284 (735)
98 KOG0640 mRNA cleavage stimulat 100.0 2.4E-29 5.1E-34 194.0 18.3 248 10-273 168-426 (430)
99 KOG0641 WD40 repeat protein [G 100.0 3E-27 6.6E-32 175.0 28.6 250 11-273 86-349 (350)
100 KOG0288 WD40 repeat protein Ti 100.0 3.2E-29 6.9E-34 199.8 19.2 245 4-271 209-459 (459)
101 KOG0305 Anaphase promoting com 100.0 3.3E-28 7.1E-33 204.4 25.4 242 13-275 216-463 (484)
102 KOG0289 mRNA splicing factor [ 100.0 8.3E-28 1.8E-32 192.9 25.3 249 5-272 252-505 (506)
103 KOG0275 Conserved WD40 repeat- 100.0 7.3E-29 1.6E-33 192.6 16.9 242 58-314 211-466 (508)
104 KOG1273 WD40 repeat protein [G 100.0 1.8E-27 4E-32 183.9 24.4 282 17-314 26-321 (405)
105 KOG1332 Vesicle coat complex C 100.0 1.5E-28 3.3E-33 183.5 17.7 248 56-314 7-285 (299)
106 KOG0300 WD40 repeat-containing 100.0 3E-28 6.6E-33 188.6 20.0 274 32-315 126-428 (481)
107 KOG1446 Histone H3 (Lys4) meth 100.0 2E-26 4.4E-31 178.3 29.9 245 54-314 8-261 (311)
108 KOG2096 WD40 repeat protein [G 100.0 4.7E-27 1E-31 181.9 26.2 283 8-312 80-399 (420)
109 KOG0646 WD40 repeat protein [G 100.0 1.5E-27 3.2E-32 193.1 24.2 267 33-315 10-307 (476)
110 KOG1408 WD40 repeat protein [F 100.0 3.2E-27 6.9E-32 200.5 26.3 285 31-315 271-671 (1080)
111 KOG1539 WD repeat protein [Gen 100.0 1.2E-26 2.6E-31 199.8 30.1 293 17-314 162-605 (910)
112 KOG0269 WD40 repeat-containing 100.0 7.8E-29 1.7E-33 211.6 16.2 243 16-273 89-340 (839)
113 KOG1332 Vesicle coat complex C 100.0 6.2E-28 1.3E-32 180.2 18.5 254 7-274 4-287 (299)
114 KOG1063 RNA polymerase II elon 100.0 5.5E-27 1.2E-31 198.1 25.0 294 6-314 259-647 (764)
115 KOG2445 Nuclear pore complex c 100.0 1.1E-26 2.4E-31 178.9 24.5 254 56-314 9-317 (361)
116 KOG0321 WD40 repeat-containing 100.0 2.8E-27 6.2E-32 198.2 22.7 296 18-315 53-391 (720)
117 KOG0267 Microtubule severing p 100.0 3E-29 6.6E-34 212.6 11.0 253 33-306 7-259 (825)
118 KOG2055 WD40 repeat protein [G 100.0 8.7E-27 1.9E-31 188.4 24.5 281 14-314 213-511 (514)
119 KOG0772 Uncharacterized conser 100.0 3E-27 6.5E-32 193.6 20.6 257 54-313 161-443 (641)
120 KOG2048 WD40 repeat protein [G 100.0 1.7E-25 3.6E-30 188.8 30.5 278 14-312 25-316 (691)
121 KOG2445 Nuclear pore complex c 100.0 6.4E-26 1.4E-30 174.8 25.3 264 6-274 5-319 (361)
122 KOG4283 Transcription-coupled 100.0 3.5E-27 7.6E-32 180.9 18.0 206 57-276 40-279 (397)
123 KOG0267 Microtubule severing p 100.0 1.1E-28 2.4E-33 209.2 10.8 236 11-265 25-260 (825)
124 KOG0639 Transducin-like enhanc 100.0 8.2E-27 1.8E-31 190.6 20.7 281 11-314 416-703 (705)
125 KOG1539 WD repeat protein [Gen 100.0 3.9E-26 8.5E-31 196.7 25.4 287 9-313 283-646 (910)
126 KOG0301 Phospholipase A2-activ 100.0 1.1E-26 2.4E-31 196.4 21.4 243 49-314 3-248 (745)
127 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6.8E-25 1.5E-29 182.3 32.1 260 15-295 31-300 (300)
128 KOG0299 U3 snoRNP-associated p 100.0 2.3E-26 5E-31 185.9 21.9 245 54-315 136-410 (479)
129 KOG0270 WD40 repeat-containing 100.0 1.3E-26 2.9E-31 186.5 20.4 248 17-278 176-454 (463)
130 KOG2106 Uncharacterized conser 100.0 1.4E-25 3.1E-30 183.4 25.8 275 15-315 247-581 (626)
131 KOG1274 WD40 repeat protein [G 100.0 1.3E-25 2.9E-30 195.3 26.3 242 57-315 10-262 (933)
132 KOG1063 RNA polymerase II elon 99.9 1.1E-25 2.4E-30 190.3 23.9 294 5-313 45-389 (764)
133 KOG4328 WD40 protein [Function 99.9 4.9E-26 1.1E-30 183.9 20.8 289 7-313 179-493 (498)
134 KOG2106 Uncharacterized conser 99.9 4.7E-24 1E-28 174.6 32.4 287 14-314 200-520 (626)
135 KOG1036 Mitotic spindle checkp 99.9 1.7E-25 3.6E-30 172.5 22.3 233 9-263 49-294 (323)
136 KOG1034 Transcriptional repres 99.9 9.8E-26 2.1E-30 175.2 20.9 293 8-314 32-382 (385)
137 KOG1274 WD40 repeat protein [G 99.9 1.5E-24 3.3E-29 188.8 29.5 273 11-308 10-293 (933)
138 KOG0646 WD40 repeat protein [G 99.9 1.7E-25 3.8E-30 181.2 21.9 238 14-296 81-330 (476)
139 KOG0647 mRNA export protein (c 99.9 3.4E-25 7.4E-30 170.4 21.4 233 8-261 66-311 (347)
140 KOG2096 WD40 repeat protein [G 99.9 2.3E-24 4.9E-29 167.2 24.2 267 43-313 64-358 (420)
141 KOG0307 Vesicle coat complex C 99.9 4.2E-26 9.1E-31 202.8 16.7 251 15-276 65-330 (1049)
142 KOG0269 WD40 repeat-containing 99.9 2.9E-26 6.3E-31 196.0 15.0 234 63-310 90-335 (839)
143 KOG0307 Vesicle coat complex C 99.9 2E-26 4.3E-31 204.8 14.2 283 18-314 10-326 (1049)
144 KOG0322 G-protein beta subunit 99.9 2.2E-25 4.7E-30 168.5 15.6 294 9-315 9-323 (323)
145 KOG0650 WD40 repeat nucleolar 99.9 9.2E-25 2E-29 182.1 20.3 255 55-312 395-677 (733)
146 KOG0302 Ribosome Assembly prot 99.9 3E-24 6.5E-29 169.8 21.7 246 56-312 147-436 (440)
147 KOG0650 WD40 repeat nucleolar 99.9 2E-24 4.3E-29 180.1 21.6 285 9-313 395-733 (733)
148 KOG0302 Ribosome Assembly prot 99.9 2.7E-24 5.8E-29 170.1 19.8 248 9-270 146-435 (440)
149 KOG4283 Transcription-coupled 99.9 1.7E-23 3.6E-28 160.8 22.8 258 11-273 98-365 (397)
150 KOG2919 Guanine nucleotide-bin 99.9 1.8E-23 3.9E-28 162.5 22.5 277 16-305 51-360 (406)
151 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-24 8E-29 175.0 19.4 267 33-314 5-279 (673)
152 KOG1034 Transcriptional repres 99.9 5.1E-24 1.1E-28 165.8 18.7 259 12-273 87-383 (385)
153 KOG4328 WD40 protein [Function 99.9 8.9E-24 1.9E-28 171.0 20.5 247 56-314 182-449 (498)
154 KOG4378 Nuclear protein COP1 [ 99.9 7.2E-24 1.6E-28 173.3 19.7 263 16-297 36-305 (673)
155 KOG1445 Tumor-specific antigen 99.9 1.1E-23 2.4E-28 177.1 21.0 112 203-314 630-749 (1012)
156 KOG1007 WD repeat protein TSSC 99.9 3.2E-23 7E-28 158.7 21.1 264 39-313 39-359 (370)
157 KOG0321 WD40 repeat-containing 99.9 1.5E-23 3.3E-28 176.0 20.9 257 11-274 97-392 (720)
158 KOG0270 WD40 repeat-containing 99.9 2.9E-23 6.3E-28 167.4 20.1 231 71-314 191-448 (463)
159 KOG0644 Uncharacterized conser 99.9 1E-24 2.3E-29 188.1 12.6 288 2-314 178-467 (1113)
160 KOG0639 Transducin-like enhanc 99.9 1.6E-23 3.4E-28 171.6 16.5 237 14-272 465-703 (705)
161 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-20 3.8E-25 162.5 36.7 286 9-314 60-358 (466)
162 KOG1538 Uncharacterized conser 99.9 4.6E-22 1E-26 168.3 23.3 273 16-314 14-292 (1081)
163 KOG2048 WD40 repeat protein [G 99.9 4E-21 8.7E-26 162.6 28.7 238 60-314 25-274 (691)
164 KOG2055 WD40 repeat protein [G 99.9 9.3E-22 2E-26 159.6 21.0 240 60-311 213-463 (514)
165 KOG2919 Guanine nucleotide-bin 99.9 4.2E-21 9.2E-26 149.4 22.0 243 62-314 51-326 (406)
166 KOG1587 Cytoplasmic dynein int 99.9 8E-21 1.7E-25 164.4 25.5 274 40-315 222-516 (555)
167 KOG1009 Chromatin assembly com 99.9 9.4E-21 2E-25 151.5 22.2 282 14-314 13-371 (434)
168 PRK11028 6-phosphogluconolacto 99.9 1.8E-19 3.8E-24 151.8 30.8 267 33-314 5-303 (330)
169 KOG0642 Cell-cycle nuclear pro 99.9 7E-22 1.5E-26 164.0 15.2 259 9-285 289-573 (577)
170 COG2319 FOG: WD40 repeat [Gene 99.9 1.3E-18 2.9E-23 150.8 36.7 285 8-314 149-441 (466)
171 KOG1188 WD40 repeat protein [G 99.9 6.5E-21 1.4E-25 149.3 18.5 270 31-313 41-344 (376)
172 KOG1273 WD40 repeat protein [G 99.9 3.5E-20 7.7E-25 143.9 21.7 235 63-314 26-279 (405)
173 KOG0642 Cell-cycle nuclear pro 99.9 2.9E-21 6.3E-26 160.3 15.3 254 56-314 290-560 (577)
174 KOG1963 WD40 repeat protein [G 99.9 7.6E-19 1.6E-23 153.1 28.7 299 7-315 198-538 (792)
175 KOG1007 WD repeat protein TSSC 99.9 1.2E-19 2.5E-24 139.4 20.5 249 8-274 57-362 (370)
176 KOG1445 Tumor-specific antigen 99.9 1.9E-19 4.1E-24 151.9 23.5 153 161-313 630-796 (1012)
177 KOG0290 Conserved WD40 repeat- 99.9 1.2E-19 2.7E-24 139.4 20.3 238 12-262 94-355 (364)
178 KOG1517 Guanine nucleotide bin 99.9 1.9E-19 4.1E-24 159.6 24.2 280 16-314 1066-1380(1387)
179 KOG0290 Conserved WD40 repeat- 99.9 4E-19 8.7E-24 136.6 21.9 282 16-311 46-361 (364)
180 KOG1009 Chromatin assembly com 99.9 1.6E-19 3.5E-24 144.5 19.8 266 6-276 57-375 (434)
181 KOG2110 Uncharacterized conser 99.9 2.2E-18 4.8E-23 136.6 25.9 234 62-315 7-248 (391)
182 KOG0303 Actin-binding protein 99.9 5.3E-19 1.2E-23 141.2 22.5 244 16-276 29-297 (472)
183 KOG0649 WD40 repeat protein [G 99.9 1.7E-18 3.7E-23 130.1 23.6 238 61-315 11-274 (325)
184 KOG1334 WD40 repeat protein [G 99.8 8.8E-20 1.9E-24 149.2 15.8 300 3-314 131-465 (559)
185 KOG1524 WD40 repeat-containing 99.8 1.4E-19 2.9E-24 149.9 16.3 209 29-269 74-282 (737)
186 KOG4227 WD40 repeat protein [G 99.8 1.9E-18 4.1E-23 138.1 22.2 286 10-313 52-385 (609)
187 PRK01742 tolB translocation pr 99.8 1.6E-18 3.5E-23 150.4 22.4 235 39-296 183-426 (429)
188 KOG1524 WD40 repeat-containing 99.8 1.5E-18 3.2E-23 143.8 20.3 263 11-310 11-281 (737)
189 KOG1538 Uncharacterized conser 99.8 7.3E-19 1.6E-23 149.2 18.8 245 5-273 44-293 (1081)
190 KOG0303 Actin-binding protein 99.8 1.3E-18 2.9E-23 138.9 18.1 209 8-234 75-297 (472)
191 KOG2110 Uncharacterized conser 99.8 4.3E-16 9.2E-21 123.8 31.6 239 15-274 6-249 (391)
192 KOG0649 WD40 repeat protein [G 99.8 8.3E-17 1.8E-21 121.1 25.2 270 15-313 11-314 (325)
193 KOG1517 Guanine nucleotide bin 99.8 6.8E-18 1.5E-22 149.9 22.3 247 62-315 1066-1333(1387)
194 KOG1188 WD40 repeat protein [G 99.8 1.9E-18 4.1E-23 135.6 16.7 196 73-278 41-247 (376)
195 KOG1587 Cytoplasmic dynein int 99.8 1.2E-17 2.7E-22 144.8 22.7 226 82-314 222-471 (555)
196 KOG1240 Protein kinase contain 99.8 2.7E-17 5.8E-22 148.2 24.9 289 11-313 1045-1431(1431)
197 PRK11028 6-phosphogluconolacto 99.8 3E-16 6.5E-21 132.2 29.9 244 15-273 35-304 (330)
198 KOG1310 WD40 repeat protein [G 99.8 3.1E-18 6.8E-23 142.3 14.6 246 4-277 40-307 (758)
199 KOG0771 Prolactin regulatory e 99.8 8E-18 1.7E-22 135.6 16.4 199 18-230 148-353 (398)
200 PRK01742 tolB translocation pr 99.8 2.5E-17 5.5E-22 143.0 21.0 211 81-314 183-400 (429)
201 KOG2111 Uncharacterized conser 99.8 2.8E-16 6.1E-21 122.5 24.3 235 62-314 7-255 (346)
202 PF02239 Cytochrom_D1: Cytochr 99.8 2.6E-15 5.7E-20 126.6 32.2 274 32-314 8-346 (369)
203 KOG0771 Prolactin regulatory e 99.8 9.9E-18 2.2E-22 135.1 16.4 200 64-314 148-353 (398)
204 KOG4227 WD40 repeat protein [G 99.8 5.9E-17 1.3E-21 129.7 19.0 247 54-314 50-321 (609)
205 KOG1963 WD40 repeat protein [G 99.8 8.4E-16 1.8E-20 134.4 26.5 276 33-313 30-320 (792)
206 KOG3881 Uncharacterized conser 99.8 6.3E-16 1.4E-20 123.6 21.9 273 13-296 54-342 (412)
207 KOG1334 WD40 repeat protein [G 99.7 1.7E-17 3.6E-22 136.1 12.1 255 9-272 180-465 (559)
208 KOG1272 WD40-repeat-containing 99.7 8.5E-18 1.8E-22 137.0 9.9 231 61-313 130-360 (545)
209 PRK03629 tolB translocation pr 99.7 5.1E-15 1.1E-19 128.4 27.7 236 41-296 180-428 (429)
210 PF10282 Lactonase: Lactonase, 99.7 9.7E-14 2.1E-18 117.2 33.7 282 33-314 2-321 (345)
211 KOG1240 Protein kinase contain 99.7 2.7E-15 5.9E-20 135.5 24.0 263 45-314 1034-1333(1431)
212 KOG2139 WD40 repeat protein [G 99.7 3E-14 6.6E-19 113.2 26.3 283 14-314 98-430 (445)
213 KOG1310 WD40 repeat protein [G 99.7 2.3E-16 5E-21 131.4 14.5 177 52-231 42-231 (758)
214 KOG0322 G-protein beta subunit 99.7 4.5E-16 9.8E-21 118.4 14.8 248 12-272 54-322 (323)
215 KOG2111 Uncharacterized conser 99.7 2.7E-13 5.9E-18 106.1 30.2 275 16-314 7-321 (346)
216 KOG1523 Actin-related protein 99.7 5.9E-15 1.3E-19 115.3 20.3 232 61-306 11-269 (361)
217 KOG1272 WD40-repeat-containing 99.7 3.6E-17 7.7E-22 133.4 8.2 191 105-314 132-322 (545)
218 PRK04922 tolB translocation pr 99.7 1.2E-14 2.7E-19 126.5 24.4 236 40-295 184-432 (433)
219 KOG0644 Uncharacterized conser 99.7 3.8E-17 8.3E-22 141.9 8.5 238 52-314 182-425 (1113)
220 PF08662 eIF2A: Eukaryotic tra 99.7 4.9E-15 1.1E-19 114.0 18.5 149 162-315 9-179 (194)
221 PRK05137 tolB translocation pr 99.7 9.7E-14 2.1E-18 121.1 27.5 236 40-296 182-433 (435)
222 PRK02889 tolB translocation pr 99.7 4.1E-14 8.8E-19 122.9 24.4 236 40-296 176-425 (427)
223 KOG2321 WD40 repeat protein [G 99.7 4E-14 8.6E-19 118.8 22.6 279 11-312 48-340 (703)
224 KOG2394 WD40 protein DMR-N9 [G 99.7 1.4E-15 3E-20 126.4 13.7 200 67-294 180-383 (636)
225 KOG4497 Uncharacterized conser 99.7 1.5E-13 3.3E-18 108.1 24.2 273 15-308 49-425 (447)
226 PRK05137 tolB translocation pr 99.7 1.8E-13 4E-18 119.3 27.8 206 82-306 182-397 (435)
227 KOG0974 WD-repeat protein WDR6 99.7 7.8E-15 1.7E-19 130.6 19.1 193 108-314 93-287 (967)
228 PRK03629 tolB translocation pr 99.7 2.5E-13 5.5E-18 117.9 28.3 213 82-313 179-404 (429)
229 PRK04922 tolB translocation pr 99.7 8.2E-14 1.8E-18 121.4 24.3 213 82-313 184-409 (433)
230 KOG1523 Actin-related protein 99.7 2.4E-14 5.3E-19 111.9 18.5 204 98-313 6-234 (361)
231 KOG3881 Uncharacterized conser 99.7 5.9E-14 1.3E-18 112.5 20.6 236 61-314 56-319 (412)
232 KOG2394 WD40 protein DMR-N9 [G 99.7 9.7E-15 2.1E-19 121.5 16.6 191 33-252 188-383 (636)
233 PRK02889 tolB translocation pr 99.6 7.8E-14 1.7E-18 121.1 23.0 207 82-307 176-392 (427)
234 PF08662 eIF2A: Eukaryotic tra 99.6 8.2E-14 1.8E-18 107.2 20.0 156 106-280 9-185 (194)
235 KOG2139 WD40 repeat protein [G 99.6 3.6E-13 7.8E-18 107.2 22.2 242 62-307 100-367 (445)
236 KOG4497 Uncharacterized conser 99.6 1.2E-13 2.7E-18 108.5 17.7 222 20-272 14-239 (447)
237 PF10282 Lactonase: Lactonase, 99.6 6E-11 1.3E-15 100.3 35.3 260 18-293 40-345 (345)
238 KOG1409 Uncharacterized conser 99.6 4.6E-13 9.9E-18 105.9 20.2 247 6-274 16-271 (404)
239 PF02239 Cytochrom_D1: Cytochr 99.6 5.4E-13 1.2E-17 112.7 22.2 255 19-282 41-356 (369)
240 KOG1354 Serine/threonine prote 99.6 2.4E-13 5.1E-18 107.5 17.5 271 13-314 24-358 (433)
241 PRK00178 tolB translocation pr 99.6 5.6E-12 1.2E-16 110.1 26.3 236 41-296 180-428 (430)
242 PRK04792 tolB translocation pr 99.6 6.4E-12 1.4E-16 109.7 26.4 236 41-296 199-447 (448)
243 KOG4190 Uncharacterized conser 99.6 3.4E-14 7.4E-19 119.1 11.1 283 11-311 732-1032(1034)
244 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.1E-10 4.6E-15 95.1 33.0 255 40-314 27-329 (352)
245 TIGR02800 propeller_TolB tol-p 99.6 8E-12 1.7E-16 108.9 26.1 207 82-307 170-386 (417)
246 TIGR02800 propeller_TolB tol-p 99.6 6.8E-12 1.5E-16 109.3 25.7 214 40-273 170-397 (417)
247 KOG0280 Uncharacterized conser 99.5 4E-12 8.6E-17 98.6 18.7 254 4-270 59-330 (339)
248 PRK00178 tolB translocation pr 99.5 2.6E-11 5.6E-16 106.0 25.7 211 83-312 180-401 (430)
249 KOG4547 WD40 repeat-containing 99.5 1.4E-11 3E-16 104.1 21.2 191 117-314 7-219 (541)
250 PLN02919 haloacid dehalogenase 99.5 1.9E-10 4.2E-15 109.4 31.4 248 65-314 572-887 (1057)
251 KOG2321 WD40 repeat protein [G 99.5 3.1E-12 6.7E-17 107.7 16.9 205 64-273 137-343 (703)
252 KOG2315 Predicted translation 99.5 1.6E-10 3.5E-15 97.3 26.4 286 15-315 35-390 (566)
253 PRK04792 tolB translocation pr 99.5 1.2E-10 2.6E-15 101.7 26.2 207 83-308 199-416 (448)
254 KOG0280 Uncharacterized conser 99.5 5.8E-11 1.3E-15 92.3 20.6 172 117-296 87-264 (339)
255 KOG1354 Serine/threonine prote 99.4 1.1E-11 2.3E-16 98.3 16.6 280 14-312 84-431 (433)
256 COG2706 3-carboxymuconate cycl 99.4 4.8E-09 1E-13 84.3 30.8 281 33-314 5-320 (346)
257 PLN02919 haloacid dehalogenase 99.4 1.1E-09 2.5E-14 104.3 32.2 252 19-277 572-892 (1057)
258 PRK01029 tolB translocation pr 99.4 1.5E-10 3.3E-15 100.3 24.2 217 82-314 165-402 (428)
259 PRK01029 tolB translocation pr 99.4 5.1E-10 1.1E-14 97.1 26.5 241 41-297 166-426 (428)
260 KOG1064 RAVE (regulator of V-A 99.4 3.4E-12 7.3E-17 119.9 13.7 214 71-315 2179-2398(2439)
261 KOG0974 WD-repeat protein WDR6 99.4 2E-11 4.3E-16 109.4 17.8 186 71-274 98-289 (967)
262 KOG4547 WD40 repeat-containing 99.4 5.3E-10 1.1E-14 94.7 24.0 191 70-274 3-221 (541)
263 TIGR03300 assembly_YfgL outer 99.4 2.5E-09 5.5E-14 91.9 28.9 265 31-312 106-376 (377)
264 KOG1409 Uncharacterized conser 99.4 6.8E-11 1.5E-15 93.8 16.3 251 51-315 15-270 (404)
265 COG5170 CDC55 Serine/threonine 99.3 1.6E-10 3.4E-15 90.8 15.9 253 59-313 25-365 (460)
266 KOG1064 RAVE (regulator of V-A 99.3 1.3E-11 2.9E-16 116.0 11.6 196 13-239 2207-2406(2439)
267 KOG2315 Predicted translation 99.3 1E-09 2.2E-14 92.6 21.5 251 18-296 129-411 (566)
268 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.4E-13 84.1 28.3 229 38-281 75-338 (352)
269 KOG2314 Translation initiation 99.3 6.9E-09 1.5E-13 87.6 25.5 273 18-315 214-525 (698)
270 COG4946 Uncharacterized protei 99.3 3.8E-08 8.2E-13 81.9 29.2 180 37-235 284-481 (668)
271 TIGR03300 assembly_YfgL outer 99.3 1.8E-08 4E-13 86.6 27.6 263 31-314 66-337 (377)
272 COG2706 3-carboxymuconate cycl 99.3 2.2E-07 4.8E-12 74.9 30.7 267 12-294 37-345 (346)
273 COG5354 Uncharacterized protei 99.2 2.2E-08 4.7E-13 83.8 24.4 277 15-315 72-395 (561)
274 KOG2041 WD40 repeat protein [G 99.2 4.2E-09 9.1E-14 91.6 20.9 276 14-311 14-333 (1189)
275 KOG4532 WD40-like repeat conta 99.2 7.8E-09 1.7E-13 79.7 19.9 244 18-274 71-332 (344)
276 KOG2314 Translation initiation 99.2 1.4E-08 3E-13 85.9 22.9 278 16-314 251-572 (698)
277 PF04762 IKI3: IKI3 family; I 99.2 1.2E-07 2.6E-12 89.3 31.2 270 12-314 118-455 (928)
278 COG5354 Uncharacterized protei 99.2 1.6E-08 3.5E-13 84.6 22.6 276 13-313 31-346 (561)
279 KOG4190 Uncharacterized conser 99.2 9.6E-11 2.1E-15 98.7 9.7 212 56-281 731-956 (1034)
280 KOG0309 Conserved WD40 repeat- 99.2 2.7E-10 5.9E-15 99.0 12.3 282 14-315 24-339 (1081)
281 KOG1912 WD40 repeat protein [G 99.2 5.3E-08 1.2E-12 85.6 26.2 226 4-230 45-303 (1062)
282 PF08450 SGL: SMP-30/Gluconola 99.2 3.1E-07 6.7E-12 74.1 29.6 222 65-303 4-243 (246)
283 PRK04043 tolB translocation pr 99.2 5.1E-08 1.1E-12 84.3 25.6 208 83-312 170-395 (419)
284 KOG2695 WD40 repeat protein [G 99.2 1.1E-10 2.4E-15 92.7 8.1 162 119-295 228-402 (425)
285 KOG0882 Cyclophilin-related pe 99.2 1.7E-09 3.6E-14 89.1 14.7 248 11-277 6-309 (558)
286 KOG2041 WD40 repeat protein [G 99.2 2.2E-09 4.7E-14 93.3 16.0 231 60-307 14-280 (1189)
287 PF15492 Nbas_N: Neuroblastoma 99.1 5.5E-08 1.2E-12 76.0 21.5 154 161-315 46-259 (282)
288 KOG4714 Nucleoporin [Nuclear s 99.1 2.7E-09 5.8E-14 81.9 13.9 202 17-232 39-255 (319)
289 PRK04043 tolB translocation pr 99.1 1.6E-07 3.6E-12 81.1 26.7 193 62-274 189-401 (419)
290 KOG1645 RING-finger-containing 99.1 8.4E-09 1.8E-13 83.8 17.1 258 42-314 175-460 (463)
291 PF04762 IKI3: IKI3 family; I 99.1 5E-07 1.1E-11 85.1 31.0 292 15-314 22-378 (928)
292 KOG1912 WD40 repeat protein [G 99.1 1.2E-08 2.5E-13 89.6 18.5 241 14-274 15-305 (1062)
293 KOG4532 WD40-like repeat conta 99.1 6.2E-08 1.3E-12 74.9 19.7 221 71-305 83-322 (344)
294 KOG3914 WD repeat protein WDR4 99.1 3.2E-09 7E-14 86.1 12.4 149 163-314 67-222 (390)
295 KOG3914 WD repeat protein WDR4 99.1 5E-09 1.1E-13 85.0 13.5 116 163-281 112-231 (390)
296 PF15492 Nbas_N: Neuroblastoma 99.1 1.5E-06 3.2E-11 68.2 25.9 200 62-281 45-267 (282)
297 COG5170 CDC55 Serine/threonine 99.0 1.2E-08 2.6E-13 80.4 14.1 247 13-272 25-366 (460)
298 PF08450 SGL: SMP-30/Gluconola 99.0 4.9E-06 1.1E-10 67.1 30.8 214 19-258 4-240 (246)
299 PF13360 PQQ_2: PQQ-like domai 99.0 5E-07 1.1E-11 72.4 23.6 219 39-278 2-235 (238)
300 KOG0309 Conserved WD40 repeat- 99.0 2.3E-09 5E-14 93.4 9.1 199 103-315 25-232 (1081)
301 PF00400 WD40: WD domain, G-be 99.0 1.5E-09 3.2E-14 60.3 5.2 39 275-313 1-39 (39)
302 PRK11138 outer membrane biogen 99.0 4.7E-06 1E-10 72.1 28.7 265 32-314 122-393 (394)
303 PF07433 DUF1513: Protein of u 98.9 1.2E-05 2.6E-10 65.0 27.5 226 65-307 9-278 (305)
304 PF13360 PQQ_2: PQQ-like domai 98.9 3.8E-06 8.1E-11 67.4 24.4 210 81-314 2-229 (238)
305 PF00400 WD40: WD domain, G-be 98.9 1.2E-08 2.5E-13 56.5 6.4 38 234-271 2-39 (39)
306 KOG4714 Nucleoporin [Nuclear s 98.9 5E-08 1.1E-12 75.1 11.5 146 32-189 103-255 (319)
307 KOG2695 WD40 repeat protein [G 98.9 1.2E-08 2.6E-13 81.4 8.2 152 76-240 228-385 (425)
308 PF07433 DUF1513: Protein of u 98.8 2.4E-05 5.3E-10 63.2 26.1 223 19-264 9-277 (305)
309 COG4946 Uncharacterized protei 98.8 6.1E-06 1.3E-10 69.2 21.5 193 112-314 276-476 (668)
310 PRK11138 outer membrane biogen 98.8 1.4E-05 3E-10 69.2 24.5 265 31-314 70-352 (394)
311 KOG1275 PAB-dependent poly(A) 98.7 3.4E-07 7.4E-12 82.0 13.7 178 117-313 149-340 (1118)
312 KOG1275 PAB-dependent poly(A) 98.7 1.3E-06 2.8E-11 78.5 15.9 181 72-271 147-340 (1118)
313 PF11768 DUF3312: Protein of u 98.7 2.1E-05 4.6E-10 67.9 22.3 109 204-314 209-328 (545)
314 PRK02888 nitrous-oxide reducta 98.7 1.9E-05 4.1E-10 69.8 22.5 181 111-314 201-403 (635)
315 COG3391 Uncharacterized conser 98.7 0.00019 4.2E-09 61.6 28.3 256 42-313 13-281 (381)
316 KOG1832 HIV-1 Vpr-binding prot 98.6 3.5E-08 7.6E-13 88.0 4.8 216 54-300 1095-1316(1516)
317 KOG2114 Vacuolar assembly/sort 98.6 2.7E-05 5.8E-10 70.0 22.3 205 67-285 30-256 (933)
318 KOG1645 RING-finger-containing 98.6 3.6E-06 7.7E-11 69.0 15.3 81 9-93 188-269 (463)
319 KOG1920 IkappaB kinase complex 98.6 2.7E-05 5.8E-10 72.5 22.6 209 61-274 69-323 (1265)
320 PF00930 DPPIV_N: Dipeptidyl p 98.6 3E-05 6.4E-10 66.1 20.8 262 39-303 22-345 (353)
321 KOG2066 Vacuolar assembly/sort 98.5 4.4E-05 9.6E-10 68.1 20.2 181 62-274 41-234 (846)
322 cd00216 PQQ_DH Dehydrogenases 98.5 0.00068 1.5E-08 60.4 28.2 276 31-314 62-423 (488)
323 KOG2114 Vacuolar assembly/sort 98.5 3.4E-05 7.5E-10 69.3 19.2 199 31-243 36-256 (933)
324 KOG1832 HIV-1 Vpr-binding prot 98.5 1.3E-07 2.8E-12 84.5 4.2 224 4-259 1089-1317(1516)
325 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00042 9.2E-09 54.1 21.9 68 31-99 64-132 (354)
326 KOG0882 Cyclophilin-related pe 98.4 2.9E-06 6.3E-11 70.5 10.1 189 115-314 20-230 (558)
327 KOG3617 WD40 and TPR repeat-co 98.4 2.1E-05 4.5E-10 70.7 15.7 112 15-133 15-131 (1416)
328 PRK02888 nitrous-oxide reducta 98.4 0.0001 2.2E-09 65.3 19.9 187 66-274 198-405 (635)
329 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00063 1.4E-08 53.2 26.6 109 30-142 23-132 (354)
330 PF08596 Lgl_C: Lethal giant l 98.4 0.00025 5.5E-09 60.7 21.2 271 16-305 3-326 (395)
331 KOG2066 Vacuolar assembly/sort 98.4 9.1E-05 2E-09 66.2 18.6 173 32-231 51-233 (846)
332 KOG1008 Uncharacterized conser 98.4 1.9E-07 4.1E-12 80.6 2.2 200 14-231 56-275 (783)
333 PF06977 SdiA-regulated: SdiA- 98.3 0.00086 1.9E-08 53.5 23.7 199 98-312 17-247 (248)
334 KOG1920 IkappaB kinase complex 98.3 0.00015 3.3E-09 67.7 19.5 197 102-315 68-322 (1265)
335 PF11768 DUF3312: Protein of u 98.3 0.00013 2.8E-09 63.2 17.2 71 159-232 260-330 (545)
336 COG0823 TolB Periplasmic compo 98.2 0.00015 3.3E-09 62.7 17.4 169 92-276 182-361 (425)
337 KOG1008 Uncharacterized conser 98.2 7E-07 1.5E-11 77.3 2.6 186 115-314 70-274 (783)
338 PF08553 VID27: VID27 cytoplas 98.2 8.4E-05 1.8E-09 68.2 15.6 139 169-308 492-641 (794)
339 PF06977 SdiA-regulated: SdiA- 98.2 0.002 4.3E-08 51.4 21.8 205 54-270 15-247 (248)
340 COG3391 Uncharacterized conser 98.2 0.0034 7.4E-08 54.0 28.5 218 63-296 76-309 (381)
341 PF04053 Coatomer_WDAD: Coatom 98.1 0.00017 3.6E-09 62.7 15.7 139 160-314 34-172 (443)
342 PF14583 Pectate_lyase22: Olig 98.1 0.004 8.6E-08 52.4 26.1 268 30-313 48-379 (386)
343 PF03178 CPSF_A: CPSF A subuni 98.1 0.00047 1E-08 57.9 17.4 174 126-314 3-201 (321)
344 cd00216 PQQ_DH Dehydrogenases 98.1 0.0068 1.5E-07 54.1 27.1 239 31-282 111-433 (488)
345 PF04053 Coatomer_WDAD: Coatom 98.1 0.0059 1.3E-07 53.3 24.6 220 59-314 31-261 (443)
346 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00074 1.6E-08 45.9 13.7 107 16-128 1-109 (111)
347 COG0823 TolB Periplasmic compo 97.9 0.002 4.3E-08 55.9 18.2 184 61-261 193-387 (425)
348 PF08596 Lgl_C: Lethal giant l 97.9 0.0043 9.3E-08 53.3 19.7 235 62-314 3-289 (395)
349 KOG3621 WD40 repeat-containing 97.8 0.0006 1.3E-08 60.3 13.3 151 59-219 32-187 (726)
350 PF06433 Me-amine-dh_H: Methyl 97.8 0.013 2.8E-07 48.5 23.7 254 40-314 17-319 (342)
351 smart00320 WD40 WD40 repeats. 97.8 4.3E-05 9.3E-10 41.1 4.2 37 277-313 4-40 (40)
352 smart00320 WD40 WD40 repeats. 97.8 9.8E-05 2.1E-09 39.6 5.7 37 235-271 4-40 (40)
353 KOG3621 WD40 repeat-containing 97.7 0.00028 6.1E-09 62.3 9.9 103 212-314 44-153 (726)
354 COG3386 Gluconolactonase [Carb 97.7 0.019 4.1E-07 47.6 24.0 224 68-306 32-276 (307)
355 KOG2395 Protein involved in va 97.7 0.0009 2E-08 57.5 12.3 140 167-308 342-494 (644)
356 PF08553 VID27: VID27 cytoplas 97.7 0.0025 5.4E-08 58.9 15.4 142 116-272 495-646 (794)
357 PF03178 CPSF_A: CPSF A subuni 97.7 0.026 5.6E-07 47.5 24.5 212 83-311 3-261 (321)
358 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0078 1.7E-07 41.0 14.0 98 109-226 9-109 (111)
359 KOG4499 Ca2+-binding protein R 97.7 0.017 3.6E-07 44.8 18.8 202 81-295 36-263 (310)
360 KOG3617 WD40 and TPR repeat-co 97.6 0.00011 2.4E-09 66.2 6.0 109 204-315 19-131 (1416)
361 PF00780 CNH: CNH domain; Int 97.6 0.026 5.5E-07 46.3 25.8 225 31-284 8-266 (275)
362 PHA02713 hypothetical protein; 97.6 0.017 3.7E-07 52.4 19.9 184 71-276 303-536 (557)
363 PRK13616 lipoprotein LpqB; Pro 97.6 0.043 9.4E-07 49.9 22.2 214 39-266 328-561 (591)
364 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.035 7.6E-07 47.4 22.8 233 14-262 42-346 (353)
365 KOG1897 Damage-specific DNA bi 97.5 0.081 1.8E-06 49.4 30.8 295 14-314 530-897 (1096)
366 KOG4640 Anaphase-promoting com 97.5 0.00075 1.6E-08 59.0 8.7 94 14-112 20-115 (665)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.086 1.9E-06 47.5 28.7 204 31-236 70-338 (527)
368 PF04841 Vps16_N: Vps16, N-ter 97.4 0.078 1.7E-06 46.2 26.9 197 83-296 62-270 (410)
369 PF06433 Me-amine-dh_H: Methyl 97.4 0.061 1.3E-06 44.7 22.6 232 39-283 66-330 (342)
370 PF14583 Pectate_lyase22: Olig 97.4 0.072 1.6E-06 45.1 23.6 222 67-306 42-303 (386)
371 PHA02713 hypothetical protein; 97.4 0.045 9.8E-07 49.7 19.1 139 169-314 351-532 (557)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.11 2.5E-06 46.7 29.1 158 32-193 122-338 (527)
373 PRK13616 lipoprotein LpqB; Pro 97.3 0.086 1.9E-06 48.1 20.1 183 104-310 351-563 (591)
374 COG3490 Uncharacterized protei 97.3 0.061 1.3E-06 43.1 20.3 232 18-271 71-346 (366)
375 KOG4640 Anaphase-promoting com 97.3 0.001 2.2E-08 58.2 7.5 71 244-315 21-92 (665)
376 KOG2395 Protein involved in va 97.3 0.0056 1.2E-07 52.8 11.6 144 112-272 343-499 (644)
377 KOG4441 Proteins containing BT 97.2 0.057 1.2E-06 49.1 18.0 217 30-266 285-534 (571)
378 KOG2444 WD40 repeat protein [G 97.2 0.0017 3.8E-08 49.8 6.9 106 169-274 69-178 (238)
379 COG3823 Glutamine cyclotransfe 97.2 0.047 1E-06 41.7 14.2 173 71-261 55-247 (262)
380 KOG4441 Proteins containing BT 97.2 0.069 1.5E-06 48.5 18.1 220 69-308 282-534 (571)
381 PF00780 CNH: CNH domain; Int 97.1 0.11 2.4E-06 42.6 25.5 229 69-314 4-254 (275)
382 KOG2444 WD40 repeat protein [G 97.1 0.0013 2.7E-08 50.6 5.3 140 172-314 32-176 (238)
383 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0041 8.8E-08 35.4 5.5 30 159-188 12-41 (47)
384 PF02897 Peptidase_S9_N: Proly 96.9 0.24 5.2E-06 43.3 29.3 250 9-277 117-408 (414)
385 PF02897 Peptidase_S9_N: Proly 96.9 0.25 5.3E-06 43.3 27.6 226 62-300 125-385 (414)
386 COG3386 Gluconolactonase [Carb 96.9 0.11 2.3E-06 43.2 15.3 153 62-221 112-276 (307)
387 KOG2079 Vacuolar assembly/sort 96.8 0.007 1.5E-07 56.5 8.8 101 169-272 98-202 (1206)
388 KOG2079 Vacuolar assembly/sort 96.8 0.0041 8.8E-08 58.0 7.2 99 213-313 99-201 (1206)
389 PHA03098 kelch-like protein; P 96.5 0.37 7.9E-06 43.8 17.9 184 70-274 293-512 (534)
390 PHA03098 kelch-like protein; P 96.5 0.28 6.2E-06 44.5 17.0 139 169-314 342-510 (534)
391 PF05096 Glu_cyclase_2: Glutam 96.5 0.33 7.1E-06 39.0 23.9 181 62-262 46-249 (264)
392 PF05096 Glu_cyclase_2: Glutam 96.5 0.34 7.3E-06 38.9 22.3 176 32-221 58-251 (264)
393 COG5167 VID27 Protein involved 96.3 0.18 3.9E-06 43.9 13.0 138 166-305 475-623 (776)
394 PF12894 Apc4_WD40: Anaphase-p 96.2 0.025 5.4E-07 32.1 5.2 31 243-273 11-41 (47)
395 KOG4499 Ca2+-binding protein R 95.9 0.63 1.4E-05 36.4 18.6 141 61-210 109-263 (310)
396 PF04841 Vps16_N: Vps16, N-ter 95.8 1.2 2.6E-05 39.0 29.5 200 41-255 62-271 (410)
397 COG3204 Uncharacterized protei 95.8 0.84 1.8E-05 37.1 14.9 145 161-306 88-253 (316)
398 TIGR02604 Piru_Ver_Nterm putat 95.8 0.7 1.5E-05 39.8 14.8 140 161-305 16-203 (367)
399 PF10313 DUF2415: Uncharacteri 95.7 0.083 1.8E-06 29.2 5.6 32 201-232 1-34 (43)
400 PHA02790 Kelch-like protein; P 95.6 1.5 3.3E-05 39.2 18.0 177 115-314 272-469 (480)
401 PF15390 DUF4613: Domain of un 95.6 0.33 7.1E-06 43.2 11.8 121 14-134 56-187 (671)
402 KOG3630 Nuclear pore complex, 95.5 0.11 2.4E-06 49.4 9.3 144 161-304 103-262 (1405)
403 PHA02790 Kelch-like protein; P 95.5 1.8 3.9E-05 38.8 17.4 179 71-273 271-470 (480)
404 PF10647 Gmad1: Lipoprotein Lp 95.4 0.81 1.8E-05 37.0 13.3 107 202-311 25-140 (253)
405 COG3204 Uncharacterized protei 95.4 1.2 2.5E-05 36.3 21.7 171 56-233 81-265 (316)
406 PF05694 SBP56: 56kDa selenium 95.3 1.8 3.8E-05 37.5 23.8 222 71-303 86-391 (461)
407 PF05694 SBP56: 56kDa selenium 95.3 1.4 3.1E-05 38.1 14.3 109 81-189 221-343 (461)
408 TIGR03118 PEPCTERM_chp_1 conse 95.2 1.5 3.2E-05 36.0 23.4 233 16-253 24-307 (336)
409 COG5167 VID27 Protein involved 95.0 0.71 1.5E-05 40.4 11.8 146 111-273 476-632 (776)
410 PF14870 PSII_BNR: Photosynthe 94.9 1.8 4E-05 35.9 30.2 148 160-312 146-301 (302)
411 PF02333 Phytase: Phytase; In 94.8 2.3 5E-05 36.4 22.7 194 22-232 60-291 (381)
412 PF10168 Nup88: Nuclear pore c 94.8 1.1 2.4E-05 42.0 13.6 71 244-315 85-179 (717)
413 PF07995 GSDH: Glucose / Sorbo 94.8 2.2 4.9E-05 36.1 24.5 237 63-310 4-330 (331)
414 COG3490 Uncharacterized protei 94.6 2 4.3E-05 34.9 20.4 102 106-219 71-179 (366)
415 KOG3630 Nuclear pore complex, 94.6 0.92 2E-05 43.6 12.5 136 62-210 102-253 (1405)
416 PF12234 Rav1p_C: RAVE protein 94.5 2.1 4.6E-05 39.2 14.2 98 214-313 42-154 (631)
417 COG3823 Glutamine cyclotransfe 94.4 1.8 3.8E-05 33.4 13.9 170 116-303 57-246 (262)
418 TIGR03074 PQQ_membr_DH membran 94.4 4.8 0.0001 38.2 25.0 206 30-237 194-483 (764)
419 PF10168 Nup88: Nuclear pore c 94.1 2 4.4E-05 40.3 13.6 28 61-89 85-112 (717)
420 PF10313 DUF2415: Uncharacteri 94.0 0.28 6E-06 27.1 4.9 31 104-134 2-34 (43)
421 PF14870 PSII_BNR: Photosynthe 94.0 3.1 6.6E-05 34.6 23.6 156 59-228 143-301 (302)
422 PRK10115 protease 2; Provision 93.8 6 0.00013 37.3 23.8 194 104-314 128-343 (686)
423 PF07569 Hira: TUP1-like enhan 93.7 0.68 1.5E-05 36.5 8.8 63 251-314 18-94 (219)
424 PRK13684 Ycf48-like protein; P 93.7 3.8 8.3E-05 34.7 15.6 107 200-310 172-283 (334)
425 PF12234 Rav1p_C: RAVE protein 93.6 2.2 4.9E-05 39.1 12.8 104 167-272 38-155 (631)
426 PF08728 CRT10: CRT10; InterP 93.4 1.4 2.9E-05 40.9 11.1 103 212-314 113-245 (717)
427 KOG4460 Nuclear pore complex, 92.8 1.3 2.9E-05 38.9 9.6 71 245-315 105-198 (741)
428 PF15390 DUF4613: Domain of un 92.6 7.6 0.00017 35.0 18.3 119 103-233 57-188 (671)
429 PRK10115 protease 2; Provision 92.4 10 0.00022 35.9 27.1 195 61-273 127-344 (686)
430 KOG4460 Nuclear pore complex, 92.4 6.9 0.00015 34.8 13.2 26 161-186 106-131 (741)
431 KOG1916 Nuclear protein, conta 92.2 0.34 7.3E-06 45.3 5.6 121 15-138 181-328 (1283)
432 KOG2280 Vacuolar assembly/sort 92.0 10 0.00022 35.2 15.1 184 80-280 62-253 (829)
433 TIGR03118 PEPCTERM_chp_1 conse 91.8 6.4 0.00014 32.4 24.1 221 64-295 26-307 (336)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 3.4 7.4E-05 36.0 10.9 83 61-143 308-408 (415)
435 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 3 6.5E-05 36.3 10.5 42 159-200 308-349 (415)
436 PF07676 PD40: WD40-like Beta 91.5 0.61 1.3E-05 25.0 4.3 30 283-312 6-38 (39)
437 TIGR03074 PQQ_membr_DH membran 91.4 14 0.0003 35.3 23.7 70 72-142 194-287 (764)
438 TIGR02604 Piru_Ver_Nterm putat 91.3 8.9 0.00019 33.0 16.9 100 161-264 74-204 (367)
439 KOG2247 WD40 repeat-containing 91.2 0.025 5.5E-07 48.6 -2.3 140 163-307 39-180 (615)
440 KOG1916 Nuclear protein, conta 90.9 0.27 5.8E-06 45.9 3.6 134 178-314 109-264 (1283)
441 PRK14131 N-acetylneuraminic ac 89.9 12 0.00026 32.3 19.5 13 181-193 190-202 (376)
442 PF07569 Hira: TUP1-like enhan 89.7 3.4 7.4E-05 32.6 8.6 63 212-275 21-97 (219)
443 TIGR02276 beta_rpt_yvtn 40-res 89.5 2.1 4.6E-05 23.1 6.0 32 112-143 1-32 (42)
444 PF07995 GSDH: Glucose / Sorbo 89.0 13 0.00028 31.5 26.8 244 16-268 3-330 (331)
445 KOG1900 Nuclear pore complex, 88.7 13 0.00027 37.0 12.6 135 178-315 97-272 (1311)
446 PF11715 Nup160: Nucleoporin N 88.5 3.2 7E-05 37.9 8.8 39 62-100 216-258 (547)
447 KOG2280 Vacuolar assembly/sort 88.2 22 0.00048 33.2 16.9 179 12-210 82-269 (829)
448 KOG1897 Damage-specific DNA bi 88.1 26 0.00057 33.9 30.2 110 165-274 494-614 (1096)
449 PF13449 Phytase-like: Esteras 88.1 15 0.00032 31.1 17.5 115 61-177 20-165 (326)
450 PF12768 Rax2: Cortical protei 88.1 14 0.00029 30.5 13.2 99 180-279 16-129 (281)
451 TIGR02276 beta_rpt_yvtn 40-res 87.7 3 6.4E-05 22.5 5.9 31 211-241 2-32 (42)
452 KOG2247 WD40 repeat-containing 87.7 0.071 1.5E-06 46.0 -2.1 147 62-225 36-182 (615)
453 PF08728 CRT10: CRT10; InterP 87.4 26 0.00056 32.9 16.2 113 160-273 102-246 (717)
454 PF10647 Gmad1: Lipoprotein Lp 87.2 14 0.00031 29.8 23.0 144 62-221 25-185 (253)
455 PF11715 Nup160: Nucleoporin N 86.8 3.2 6.9E-05 37.9 7.7 35 245-279 216-254 (547)
456 TIGR03548 mutarot_permut cycli 85.9 20 0.00043 30.2 20.8 25 169-193 171-199 (323)
457 PF12657 TFIIIC_delta: Transcr 85.4 7.9 0.00017 29.2 8.1 30 244-273 86-121 (173)
458 PF07676 PD40: WD40-like Beta 83.8 4.8 0.0001 21.4 5.6 29 102-130 8-38 (39)
459 PF08801 Nucleoporin_N: Nup133 83.6 28 0.0006 30.7 11.9 30 160-189 191-220 (422)
460 PF08801 Nucleoporin_N: Nup133 83.5 31 0.00067 30.4 15.3 31 244-274 190-220 (422)
461 TIGR03548 mutarot_permut cycli 83.0 27 0.00058 29.4 20.2 64 169-234 123-197 (323)
462 PF14781 BBS2_N: Ciliary BBSom 82.2 16 0.00034 26.2 11.8 107 165-274 5-126 (136)
463 TIGR03547 muta_rot_YjhT mutatr 82.1 31 0.00066 29.4 20.6 14 180-193 168-181 (346)
464 PF01436 NHL: NHL repeat; Int 81.9 4.6 0.0001 19.8 4.1 25 246-270 4-28 (28)
465 PF07250 Glyoxal_oxid_N: Glyox 81.8 25 0.00055 28.2 11.4 148 43-197 49-206 (243)
466 PF14761 HPS3_N: Hermansky-Pud 81.3 5.8 0.00013 30.9 5.8 49 257-306 30-80 (215)
467 KOG2377 Uncharacterized conser 80.9 39 0.00085 29.8 12.9 55 156-210 64-122 (657)
468 PRK14131 N-acetylneuraminic ac 80.6 37 0.0008 29.3 19.5 13 126-138 190-202 (376)
469 PF12657 TFIIIC_delta: Transcr 79.7 21 0.00046 26.9 8.5 31 103-133 86-121 (173)
470 COG4257 Vgb Streptogramin lyas 79.7 32 0.0007 28.1 21.0 225 32-274 75-306 (353)
471 PF12768 Rax2: Cortical protei 79.6 34 0.00073 28.3 12.5 97 124-234 15-126 (281)
472 PF03022 MRJP: Major royal jel 79.2 35 0.00076 28.3 23.3 177 83-261 35-253 (287)
473 PLN02193 nitrile-specifier pro 78.4 50 0.0011 29.6 19.9 103 169-275 228-353 (470)
474 PF12341 DUF3639: Protein of u 78.1 6.6 0.00014 19.3 3.5 26 286-313 2-27 (27)
475 KOG1983 Tomosyn and related SN 77.9 78 0.0017 31.5 15.2 26 252-277 243-268 (993)
476 PLN02193 nitrile-specifier pro 77.8 53 0.0011 29.5 21.1 107 115-234 229-354 (470)
477 PF14761 HPS3_N: Hermansky-Pud 76.3 35 0.00076 26.7 12.2 45 74-119 30-76 (215)
478 PLN02153 epithiospecifier prot 73.5 56 0.0012 27.7 21.6 25 169-193 137-172 (341)
479 PF05935 Arylsulfotrans: Aryls 73.1 71 0.0015 28.8 17.6 155 70-245 113-315 (477)
480 PRK13684 Ycf48-like protein; P 73.0 58 0.0013 27.7 30.5 148 160-313 174-329 (334)
481 COG4590 ABC-type uncharacteriz 72.9 16 0.00036 31.9 6.7 167 97-277 215-390 (733)
482 PF03088 Str_synth: Strictosid 72.9 23 0.00049 23.4 6.1 42 219-261 33-74 (89)
483 TIGR03606 non_repeat_PQQ dehyd 72.5 71 0.0015 28.5 14.6 104 201-307 30-167 (454)
484 PF03022 MRJP: Major royal jel 71.3 58 0.0013 27.0 23.7 171 125-302 34-252 (287)
485 PF14779 BBS1: Ciliary BBSome 70.1 58 0.0012 26.4 17.9 58 171-228 196-255 (257)
486 COG4590 ABC-type uncharacteriz 69.4 25 0.00053 30.9 7.0 150 161-314 223-385 (733)
487 TIGR03606 non_repeat_PQQ dehyd 69.3 84 0.0018 28.0 13.7 102 161-264 32-166 (454)
488 KOG1896 mRNA cleavage and poly 68.5 1.4E+02 0.003 30.2 25.3 138 171-314 1047-1212(1366)
489 KOG3616 Selective LIM binding 68.1 18 0.00039 33.9 6.2 66 244-312 15-80 (1636)
490 PF13449 Phytase-like: Esteras 67.9 75 0.0016 26.9 16.2 152 161-314 22-248 (326)
491 PF03088 Str_synth: Strictosid 67.3 33 0.00072 22.6 6.2 55 175-230 32-86 (89)
492 PF07250 Glyoxal_oxid_N: Glyox 67.1 23 0.00049 28.5 6.1 81 225-306 48-138 (243)
493 PF14727 PHTB1_N: PTHB1 N-term 67.1 90 0.0019 27.5 22.2 198 14-227 128-356 (418)
494 smart00564 PQQ beta-propeller 66.0 15 0.00033 18.3 4.1 24 74-97 8-31 (33)
495 COG5290 IkappaB kinase complex 65.0 49 0.0011 31.5 8.3 62 161-223 298-359 (1243)
496 TIGR03547 muta_rot_YjhT mutatr 64.5 89 0.0019 26.5 20.2 23 71-93 63-96 (346)
497 KOG1520 Predicted alkaloid syn 63.1 99 0.0021 26.6 13.6 144 104-258 116-279 (376)
498 PF01011 PQQ: PQQ enzyme repea 61.0 23 0.00051 18.7 4.6 26 119-144 4-29 (38)
499 KOG2109 WD40 repeat protein [G 60.8 77 0.0017 29.4 8.6 79 234-312 483-573 (788)
500 PLN02153 epithiospecifier prot 60.7 1E+02 0.0023 26.1 21.0 25 169-193 85-114 (341)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-54 Score=340.39 Aligned_cols=291 Identities=26% Similarity=0.413 Sum_probs=269.6
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC--CCEEEEeeCC
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS--GIIAASASLD 81 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~--g~~l~s~~~d 81 (315)
+.+-...-+-+.+|..+.|+++++ .|+|||++|.+++|+..+......+.||+..+.++.|+|. +.-++|++.|
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~----~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSK----HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCC----eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence 334444567889999999999886 6999999999999999888888999999999999999997 5689999999
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (315)
|++++|++.+...+..+.+|...|..++|+|+|.++ .+++.|.+-++||++++..+. ...+|...|
T Consensus 241 gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL-------------~QEGHs~~v 306 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELL-------------LQEGHSKGV 306 (459)
T ss_pred CceeeeccCCCcchhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhH-------------hhccccccc
Confidence 999999999999999999999999999999999965 688999999999999865442 234566779
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247 162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241 (315)
Q Consensus 162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 241 (315)
.+++|+|||..+++|+.|..-++||+++++.+..+.+|..+|.++.|+| ++..+++|+.|++++|||++....+..+.+
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccc
Confidence 9999999999999999999999999999999999999999999999999 889999999999999999999999999999
Q ss_pred ccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 242 HASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 242 ~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
|.+-|..+.|+| .|.+|+|++.|++++||...++.+++++.+|++.|.++.++|++..+++++.|++|++|.
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999 688999999999999999999999999999999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-53 Score=333.15 Aligned_cols=285 Identities=29% Similarity=0.473 Sum_probs=254.8
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEEeCC-----CCCEEEEeeCCC
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVAAHP-----SGIIAASASLDS 82 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~~~~-----~g~~l~s~~~d~ 82 (315)
+.++|...|.||+|+|++. .||+|+.||+|++||+.+++ ..+.+.+|...|++++|.| .+.++++++.||
T Consensus 152 t~KgH~~WVlcvawsPDgk----~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGK----KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred eecCCccEEEEEEECCCcc----hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 3579999999999999987 49999999999999998766 4567899999999999975 567999999999
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
.++|||+..+.++.++.+|..+|.+++|-- ..++++|+.|++|++|+...+++...+. +|..+|+
T Consensus 228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lk-------------GHahwvN 292 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELK-------------GHAHWVN 292 (480)
T ss_pred CEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhc-------------ccchhee
Confidence 999999999999999999999999999964 4478899999999999998877665443 2333444
Q ss_pred EEEEC-----------C-------------------------CCCEEEEecCCCcEEEEEccc-ceeeeeecCCccceEE
Q 021247 163 SVAWS-----------P-------------------------DGRRIACGSMDGTISVFDVTR-AKFLHHLEGHFMPVRS 205 (315)
Q Consensus 163 ~~~~~-----------~-------------------------~~~~l~~~s~dg~i~i~d~~~-~~~~~~~~~~~~~v~~ 205 (315)
.++++ | .++.+++|+.|.++++|+... .+++..+.+|...|+.
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH 372 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence 44433 2 235699999999999999754 4578899999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc
Q 021247 206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285 (315)
Q Consensus 206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 285 (315)
+.|+| +++++++++-|..|++||.++++.+..+++|.+.|..++|+.|.++|++|+.|.++++|++++++....+++|.
T Consensus 373 V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 373 VSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred EEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence 99999 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 286 DQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
++|.++.|+|||.++++++.|+.++||.
T Consensus 452 DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-52 Score=327.71 Aligned_cols=289 Identities=32% Similarity=0.427 Sum_probs=259.8
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF 87 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w 87 (315)
+...+|.++|.|++|+|.+. .|+|||.|.++++||+++.......++|..-|.+++|+|||+.|++|+.||+|++|
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~----~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGS----RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred cccCCCCCcEEEEEecCCCc----eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 44679999999999999775 69999999999999999988889999999999999999999999999999999999
Q ss_pred ECCCCcee-EEeeCCcccEEEEEECCC----CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 88 DVDTNASI-ATLEASPSEVWQMQFDPK----GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
|.++++.+ ..+..|...|.+++|.|- +...+++++.||.++|||+..++++..+ .+|...|+
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-------------sgHT~~VT 251 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-------------SGHTASVT 251 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-------------ccCccceE
Confidence 99998764 678999999999999873 1235688999999999999887776655 35666799
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc-----------C---------------------
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS-----------P--------------------- 210 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----------~--------------------- 210 (315)
|++|.-+| ++++|+.|++|++|+...+++...+++|...|+.++.+ |
T Consensus 252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 99998654 89999999999999999999999999999989888776 2
Q ss_pred ---CCCcEEEEEeCCCeEEEEeCCC-CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247 211 ---VDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD 286 (315)
Q Consensus 211 ---~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 286 (315)
..+..+++|++|.++.+|+... .+.+..+.+|..-|+.+.|+||++++|+++-|..|++|+.++|+.+.++.+|-+
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence 1234699999999999999764 457788999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 287 QVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 287 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+|..++||.|.+.|++++.|.++++|++
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred eeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 9999999999999999999999999986
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.9e-47 Score=287.49 Aligned_cols=289 Identities=21% Similarity=0.332 Sum_probs=258.7
Q ss_pred chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
+...++++|.++|+++.|+++.+ .|+++|.||.+.+||..+......++-...-|..++|+|.|+++++|+-|..+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr----~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR----RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeEEEecccccceeeeEecCCcC----eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 45577999999999999999887 59999999999999987766556666666789999999999999999999999
Q ss_pred EEEECCCC------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 85 RVFDVDTN------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 85 ~~w~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
-|+++.+. +..+.+.+|.+.+.++.|-+++. ++++++|.++.+||+++++.+..+. +|.
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-------------GH~ 186 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-------------GHT 186 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-------------CCc
Confidence 99999855 23456888999999999988654 4688999999999999998887774 345
Q ss_pred cceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247 159 KFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT 237 (315)
Q Consensus 159 ~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 237 (315)
.-|.++.++| +++.|++|+-|+..++||++.+...+.+.+|+..|+++.|+| ++.-+++|++|++.++||++....+.
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEe
Confidence 5599999999 899999999999999999999999999999999999999999 67889999999999999999877766
Q ss_pred Eee--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 238 AMS--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 238 ~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
.+. .-..+|++++||..|++|++|..|.++.+||.-.++....+.+|+..|.++..+|||..|++|+.|.++|||.
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 665 3356799999999999999999999999999999999999999999999999999999999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-45 Score=278.71 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=250.1
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-----CCcceeeccccccceEEEEeCCCCCEEEEe
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-----DMQLERTNTGHCLGVVSVAAHPSGIIAASA 78 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-----~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 78 (315)
+.+...+++|++.|.+++-.+.. +.++++++.|.++.+|++. .+...+.+.||...|..+..+++|++.+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec
Confidence 44566789999999999998864 3489999999999999864 344577889999999999999999999999
Q ss_pred eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 79 SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 79 ~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
++|+++|+||+.+++..+.+.+|...|.+++|+|++..+ ++|+.|.+|++|++... +..++ .+ ..++
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~-ck~t~--~~---------~~~~ 148 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGV-CKYTI--HE---------DSHR 148 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeeccc-EEEEE--ec---------CCCc
Confidence 999999999999999999999999999999999998865 79999999999998653 22222 11 1236
Q ss_pred cceEEEEECCC--CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247 159 KFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 159 ~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
.+|+|++|+|+ ..+|++++.|+++++||+++.+....+.+|+..++.+.++| ++.++++|+.||.+.+||++.++.+
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCcee
Confidence 78999999997 67899999999999999999999999999999999999999 7889999999999999999998886
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc----c-----ccceEEEEEeeCCCEEEEEeCCC
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN----H-----TDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
+.+ +|...|.+++|+|+...|+. ..+..|+|||+.+++.+.++.- . .....+++||++|..|+++-.|+
T Consensus 228 ysl-~a~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 228 YSL-EAFDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred Eec-cCCCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 655 47788999999998765554 4566699999999887766532 1 23467899999999999999999
Q ss_pred cEEEeec
Q 021247 308 SISLYEY 314 (315)
Q Consensus 308 ~i~i~~~ 314 (315)
.|++|.+
T Consensus 306 ~irv~qv 312 (315)
T KOG0279|consen 306 VIRVWQV 312 (315)
T ss_pred cEEEEEe
Confidence 9999986
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=305.28 Aligned_cols=253 Identities=35% Similarity=0.496 Sum_probs=234.8
Q ss_pred ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247 3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS 82 (315)
Q Consensus 3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~ 82 (315)
.++...++.+|+..|.++.|.|... ...++||+.||++++|+.++...+..+.+|...|..++|+|+|++|++++.|.
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~--~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~ 283 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDS--DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS 283 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCC--ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc
Confidence 3455667889999999999999741 23599999999999999998888888999999999999999999999999999
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
+-|+||++++..+...++|...|.+++|+|+|. ++++|+.|..-+|||+|++..+-.+. +|...|.
T Consensus 284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~-------------gH~k~I~ 349 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLA-------------GHIKEIL 349 (459)
T ss_pred chhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEec-------------cccccee
Confidence 999999999999888899999999999999998 56899999999999999998876553 3556699
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH 242 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 242 (315)
+++|+|+|..||+|+.|++++|||++..+.+..+.+|...|..++|+|..+++|++++.|+++++|..++..+++.+.+|
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 243 ASWVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
.+.|.+++++|+++.++|++.|+++++|.
T Consensus 430 e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999995
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.8e-44 Score=275.48 Aligned_cols=288 Identities=27% Similarity=0.400 Sum_probs=253.5
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-CCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV 86 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~ 86 (315)
-.+.+|..+|+.+.|.|++. +|+||+.|..|.+|+.. ..+-...+++|.++|..+.+.+++..+++++.|++++.
T Consensus 41 m~l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCC----eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 34679999999999999664 79999999999999954 33445567799999999999999999999999999999
Q ss_pred EECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247 87 FDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW 166 (315)
Q Consensus 87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (315)
||.++++++...+.|..-|..+.-..-|..++.+++.|+++++||+|+...++++. .+..++++.|
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------~kyqltAv~f 182 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------NKYQLTAVGF 182 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--------------cceeEEEEEe
Confidence 99999999999999999999988666678889999999999999999766554442 2345899999
Q ss_pred CCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEEeecc
Q 021247 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG----KSLVTAMSGH 242 (315)
Q Consensus 167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~~~~~~ 242 (315)
..++..+.+|+-|+.|++||++.+.....+.+|..+|+.+..+| ++.++++-+.|.++++||.+. ..++..+.+|
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 99999999999999999999999999999999999999999998 667899999999999999874 3345666554
Q ss_pred --cc--cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 243 --AS--WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 243 --~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.. -...++|+|++..+.+|+.|+.+++||...++.+..+++|.+.|+++.|+|....|.+++.|++|.+=++
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 22 2456789999999999999999999999999999999999999999999999999999999999987544
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-44 Score=283.26 Aligned_cols=288 Identities=27% Similarity=0.411 Sum_probs=265.2
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF 87 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w 87 (315)
+-+.+|..+|+.+-|.|... +.++++.|++|++||..++++++.+.||..++..++|+..|+++++++.|=.+++|
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~----~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA----LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred hhhhccccceeeeeeccCce----EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 34568999999999988654 79999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247 88 DVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW 166 (315)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (315)
|..+ .+++....+|...|.++.|-|.|.++ ++++.|.+|+.|++.++.++.++.. |..++..++.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~-------------h~ewvr~v~v 243 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPG-------------HSEWVRMVRV 243 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccC-------------chHhEEEEEe
Confidence 9987 45677778888889999999998755 7899999999999999988887743 4458999999
Q ss_pred CCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC--------------CCcEEEEEeCCCeEEEEeCCC
Q 021247 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV--------------DPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~s~~~d~~i~~wd~~~ 232 (315)
+.||..+++++.|.++++|-+.+.++...++.|+.+|.+++|-|. +++++++++.|++|++||+..
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 999999999999999999999999888899999999999999752 235899999999999999999
Q ss_pred CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
+.++-++.+|..+|..++|+|.|++|+++..|+++++||++.+.++++++.|+.-++++.|+.+..++++|+-|.++++|
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 021247 313 E 313 (315)
Q Consensus 313 ~ 313 (315)
.
T Consensus 404 E 404 (406)
T KOG0295|consen 404 E 404 (406)
T ss_pred e
Confidence 6
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-43 Score=262.41 Aligned_cols=270 Identities=25% Similarity=0.386 Sum_probs=233.8
Q ss_pred CCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEE
Q 021247 29 RPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVW 106 (315)
Q Consensus 29 ~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~ 106 (315)
.+.+|+|+|.|.+|++|...++.+.+.++-....|+.+.+.|++..|++++.- .||+||++++. ++.+++.|...|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 45689999999999999999999999998778899999999999999988754 69999999875 5889999999999
Q ss_pred EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEE
Q 021247 107 QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD 186 (315)
Q Consensus 107 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d 186 (315)
.+.|..+|+- +++|++||+++|||+|.....+.+ .+..+|+++..+|+...|++|..+|.|++||
T Consensus 88 aVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~--------------~~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 88 AVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY--------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred EEEEeecCeE-EEecCCCceEEEEeccCcccchhc--------------cCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 9999999885 579999999999999974333222 3445699999999999999999999999999
Q ss_pred cccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------eeEEEeecccccEEEEEEcCCCCeEE
Q 021247 187 VTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK------SLVTAMSGHASWVLSVDASPDGAAIT 259 (315)
Q Consensus 187 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (315)
+....+...+. ....+|.++...| ++.+++.+...|..++|++-.. ..+..++.|.+.|..+.+||++++|+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 98776554443 2346789999998 6789999999999999998653 34456788999999999999999999
Q ss_pred EEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 260 TGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 260 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+++.|.+++||+.+.. +...++.+|...+|.++||.+|.||++++.|+.+++|+++
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 9999999999999876 4456678999999999999999999999999999999974
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=290.77 Aligned_cols=282 Identities=22% Similarity=0.402 Sum_probs=247.7
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~ 93 (315)
...|+.|.|.|++. .|++|+..|.+.+|+.........+..|..+|.++.++++|.+++||+.+|.|++|+.+-+.
T Consensus 96 kc~V~~v~WtPeGR----RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR----RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCc----eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 45899999999987 49999999999999987666666778999999999999999999999999999999987654
Q ss_pred eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247 94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI 173 (315)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 173 (315)
......+|...|.+++|+|+...+ +++++|++|+|||.+..+.-..+ .+|.--|.++.|+|...++
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF-~t~SdDg~ikiWdf~~~kee~vL-------------~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKF-LTCSDDGTIKIWDFRMPKEERVL-------------RGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCcee-EEecCCCeEEEEeccCCchhhee-------------ccCCCCcceeccCCcccee
Confidence 443444555899999999987755 78999999999999865543333 2344458999999999999
Q ss_pred EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247 174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP 253 (315)
Q Consensus 174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 253 (315)
++|+.|+.|++||.+++.++.++.+|+..|..+.|.| ++.+|++++.|..+++||++..+.+..+++|...++++.|+|
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 9999999999999999999999999999999999999 559999999999999999998888888899999999999999
Q ss_pred -CCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 254 -DGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 254 -~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
...+|.+|+.||.|..|.+...+++..+ .+|...||+++|+|-|+.|++|+.|.++++|.-
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 5678999999999999999866666555 468899999999999999999999999999963
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-41 Score=271.41 Aligned_cols=280 Identities=22% Similarity=0.368 Sum_probs=250.5
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~ 93 (315)
...|++++|+.++. +||+|+.||.+++|+. ++.+...+..|++||.++.|+..|.+|++++.|+++-+||..++.
T Consensus 235 nkdVT~L~Wn~~G~----~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGT----LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCC----eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 35899999998776 7999999999999986 455667788899999999999999999999999999999999999
Q ss_pred eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247 94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI 173 (315)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 173 (315)
..+.+..|..+-..+.|-.+. -+++++.|+.|+|+-+....++.++ .+|...|.++.|+|.|.+|
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~-------------~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTF-------------IGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceee-------------ecccCceEEEEECCCCceE
Confidence 999998888886778886543 3577889999999988655444443 3466679999999999999
Q ss_pred EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC--------cEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247 174 ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP--------RVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245 (315)
Q Consensus 174 ~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 245 (315)
++++.|++++||..........+..|..+|..+.|+|.++ ..+++++.|+++++||...+.++..+..|..+
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p 454 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP 454 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence 9999999999999988888999999999999999998653 46999999999999999999999999999999
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|.+++|+|+|+++|+|+.||.|.+|+.++++.++...+ .+.|..+.|+.+|.+|..+-.|+.+++-|+
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999999999999999999999999999988765 457999999999999999999999999876
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.9e-41 Score=290.97 Aligned_cols=286 Identities=30% Similarity=0.494 Sum_probs=255.2
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
..|...|.++.|+|.+. .+++++.|+.+++|+....+ +.+.+.+|...|..++|+|+|.++++++.|++||+||
T Consensus 156 ~~~~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGR----ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred ccccCceEEEEEcCCCC----eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 45588999999999886 59999999999999987766 6677789999999999999999999999999999999
Q ss_pred C-CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247 89 V-DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS 167 (315)
Q Consensus 89 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 167 (315)
+ ..+..+.++.+|...|.+++|+|++ .++++|+.|++|++||++++++...+. .|...|++++|+
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~-------------~hs~~is~~~f~ 297 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLK-------------GHSDGISGLAFS 297 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeee-------------ccCCceEEEEEC
Confidence 9 4557889999999999999999999 577899999999999999988887774 355569999999
Q ss_pred CCCCEEEEecCCCcEEEEEcccce--eeeeecCCccc--eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247 168 PDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMP--VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243 (315)
Q Consensus 168 ~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 243 (315)
+++++|++++.|+.|++||+.++. +...+..+..+ ++.+.|+| ++.+++++..|+.+++||+.....+..+.+|.
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 999999999999999999999998 45666666554 99999998 78899999999999999999999998888887
Q ss_pred cc---EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-ccceEEEEEeeCCCEEEEEe--CCCcEEEeecC
Q 021247 244 SW---VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-TDQVWGVSFRPLGGRVVSVS--DDKSISLYEYS 315 (315)
Q Consensus 244 ~~---i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~d~~i~i~~~~ 315 (315)
.. +.+...++.++++++|+.|+.|++|++.++..+..+.+| ...+..+.++|..+++++.+ .|+.+++|.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 64 444556778999999999999999999999999999999 88899999999999999988 79999999863
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-40 Score=270.75 Aligned_cols=286 Identities=35% Similarity=0.550 Sum_probs=253.2
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
...+|.++|++++|+|.++ ++++++.||.|++|+..+.+.......|...+..+.++|++.++++++.|+.|++|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC----EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 3458999999999999754 799999999999999988777777788999999999999999999999999999999
Q ss_pred CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
+.+++.+..+..+...+.++.|+|++. ++++++.++.+.+||+++.+....+. .+...+.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~ 145 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-------------GHTDWVNSVAFSP 145 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-------------cCCCcEEEEEEcC
Confidence 998888888888888999999999865 55666679999999998766655543 2334589999999
Q ss_pred CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS 248 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~ 248 (315)
++.++++++.++.+++||+++++....+..|...+.++.|+| +++.+++++.|+.+++||.+.++.+..+..|...+.+
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence 988999888899999999998888888888988999999998 5567888888999999999988888888788889999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 249 VDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 249 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+.++|++.++++++.|+.|++|++..++....+..|...+.++.|+|++++|++++.|+.|++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999988888888899999999998888888888989999999999999999999999999996
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-41 Score=273.28 Aligned_cols=285 Identities=27% Similarity=0.463 Sum_probs=246.0
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC--Cccee-----e-c--cc----cccceEEEEeCCCCCE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--MQLER-----T-N--TG----HCLGVVSVAAHPSGII 74 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~--~~~~~-----~-~--~~----h~~~v~~~~~~~~g~~ 74 (315)
+++ |+.+|++.+|.|... .++++|+.|-+.++|++.. ..... . + .+ ....|++++|+.+|..
T Consensus 174 vl~-~~~~V~~~~WnP~~~---~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 174 VLR-HESEVFICAWNPLRD---GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ecc-CCCceEEEecCchhh---hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 344 999999999999654 3799999999999998753 11111 0 0 11 2357999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247 75 AASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK 154 (315)
Q Consensus 75 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (315)
|++|+.||.+|+|+.. +..+.++..|.++|.++.|+..|+++ ++++.|+++.+||..++.....+.+...+
T Consensus 250 LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yi-lS~~vD~ttilwd~~~g~~~q~f~~~s~~------- 320 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYI-LSGGVDGTTILWDAHTGTVKQQFEFHSAP------- 320 (524)
T ss_pred EEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEE-EeccCCccEEEEeccCceEEEeeeeccCC-------
Confidence 9999999999999975 55677888999999999999999976 57889999999999888877766554332
Q ss_pred CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS 234 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 234 (315)
-..+.|-. ...|++++.|+.|+++.+...++..++.+|.++|.++.|.| .+.+|+++++|+++++|.+....
T Consensus 321 ------~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 321 ------ALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred ------ccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc
Confidence 23456643 45789999999999999999999999999999999999998 57899999999999999999888
Q ss_pred eEEEeecccccEEEEEEcCCC---------CeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247 235 LVTAMSGHASWVLSVDASPDG---------AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
....+..|+..|..+.|+|.| ..+++++.|++|++||+..+.+++++..|.++|.+|+|||+|+++|+|+.
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 888999999999999999964 48899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeec
Q 021247 306 DKSISLYEY 314 (315)
Q Consensus 306 d~~i~i~~~ 314 (315)
||.|.||+.
T Consensus 473 dg~V~iws~ 481 (524)
T KOG0273|consen 473 DGCVHIWST 481 (524)
T ss_pred CCeeEeccc
Confidence 999999974
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=264.48 Aligned_cols=287 Identities=26% Similarity=0.420 Sum_probs=256.5
Q ss_pred hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR 85 (315)
Q Consensus 6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~ 85 (315)
+..|..+|.+.|-||++-|.. ..|+|||.|++++|||++++++.-.+.||...|..+++++-..++.+++.|+.|+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n----~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGN----EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred ehhhhhhccceEEEEeeCCCc----eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 345788999999999998853 3799999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
-||++.++.++.+-+|-..|.+++.+|.-. ++++|+.|.++++||+|+...+..+. +|...|..+.
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~-------------GH~~~V~~V~ 284 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLS-------------GHTNPVASVM 284 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEec-------------CCCCcceeEE
Confidence 999999999999999999999999999865 66899999999999999877666653 4566688999
Q ss_pred ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 245 (315)
+.|-...+++|+.|++|++||++.++....+..|+..+++++.+| ....+++++.|. |+-|++..+..+..+.+|..-
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~i 362 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSGHNAI 362 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhccccccce
Confidence 998888999999999999999999999999999999999999998 556778887774 899999999888889999999
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc--------cccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--------HTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
|+.++.+.|+ ++++|+.+|.+.+||.+++...+.... -+..|.+.+|...|.+|+++..|++|++|+
T Consensus 363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 9999998876 689999999999999998866554321 234688999999999999999999999997
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.4e-43 Score=281.58 Aligned_cols=287 Identities=23% Similarity=0.442 Sum_probs=245.7
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF 87 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w 87 (315)
...+|+..|+++.|.|..-. +|++|+.|+.|+||+... +.+.+.+.+|..+|..++|+++|..++|++.|+++++|
T Consensus 209 ~~~gH~kgvsai~~fp~~~h---LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGH---LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred eccCCccccchhhhccceee---EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 35799999999999995433 899999999999999765 78899999999999999999999999999999999999
Q ss_pred ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247 88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS 167 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 167 (315)
|+++|+++..+.. ...+.++.|+|++..++++|+.|+.|+.||+|+++.+..+. .|...|..+.|-
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-------------~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-------------RHLGAILDITFV 351 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-------------hhhhheeeeEEc
Confidence 9999999888764 35678999999997888999999999999999988776553 344558999999
Q ss_pred CCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---eeEEEeecc-
Q 021247 168 PDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK---SLVTAMSGH- 242 (315)
Q Consensus 168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~- 242 (315)
++|+++++.+.|+.+++|+.+.+-.+.... .+.-...++..+| ++.+++.=+.|+.|.+|..... ...+.+.+|
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 999999999999999999988776543322 2222445778888 6678999999999999986543 223445677
Q ss_pred -cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEee
Q 021247 243 -ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYE 313 (315)
Q Consensus 243 -~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~ 313 (315)
.+.-..+.|||||++|++|+.||.+.+||.++.+.+..+..|.+.+..+.|+|. ...||++|.||.|++|+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 456778999999999999999999999999999999999999999999999997 45799999999999996
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-41 Score=283.06 Aligned_cols=294 Identities=22% Similarity=0.350 Sum_probs=257.4
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
.-|..++|..+.|.-.. ...++.++..+.+++|+..+..+. .+.||+..|.++....+|.+|+|++.|.++++|.+
T Consensus 319 ivG~ndEI~Dm~~lG~e---~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPE---ESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred hcCCchhheeeeecCCc---cceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence 34667899999987533 247999999999999988877765 78899999999998888999999999999999998
Q ss_pred CCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC-CCCccCCCCcceEEE
Q 021247 90 DTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-KPTDKSSSKKFVLSV 164 (315)
Q Consensus 90 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 164 (315)
+++. ++....+|.+.|.+++++..+..++++++.|+++++|++...+.... +..+ .......|..-|+++
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----PIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----cceehhhHHHHhhcccccce
Confidence 6553 34455778899999999888888999999999999999976322211 0000 001123455669999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccc
Q 021247 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHAS 244 (315)
Q Consensus 165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 244 (315)
+++|+...+++||+|.+.++|+++.++....+.+|...+.++.|+| .++++++++.|.+|+||.+.+.++++++.||..
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 9999999999999999999999999999999999999999999998 678999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
.|..+.|-.++..|++++.||-|++|++++.+++.++..|++.||+++-+|+..++++|+.||.|.+|.
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999999995
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-39 Score=262.28 Aligned_cols=300 Identities=25% Similarity=0.379 Sum_probs=250.5
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
.+|...|+++.|-|.. +-.++|||.|++|-+|+-...++......|...|+++.++|||.++++++.||++.+||-.
T Consensus 144 ~GhSr~ins~~~KpsR---PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSR---PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred eccceeEeeeeccCCC---ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 5999999999999864 4579999999999999877777777888999999999999999999999999999999999
Q ss_pred CCceeEEee---CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC---------------------
Q 021247 91 TNASIATLE---ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP--------------------- 146 (315)
Q Consensus 91 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------------------- 146 (315)
+++.+..+. .|.+.|..++|+|++..+ ++.+.|.++++||..+.+++.++.....
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQF-LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceE-EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 999988887 788999999999999976 5778999999999998887777654332
Q ss_pred ---------CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee-----------eeec---------
Q 021247 147 ---------EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL-----------HHLE--------- 197 (315)
Q Consensus 147 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~-----------~~~~--------- 197 (315)
....+....+|...|+++..+|++.+|++|+.||.|.-||..++..- ..+.
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 01122334678888999999999999999999999999997543211 0000
Q ss_pred ------------------CC-------------------------------------------ccceEEEEEcCCCCcEE
Q 021247 198 ------------------GH-------------------------------------------FMPVRSLVYSPVDPRVL 216 (315)
Q Consensus 198 ------------------~~-------------------------------------------~~~v~~~~~~~~~~~~l 216 (315)
.+ .....+++++| ++..+
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~v 458 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEV 458 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEE
Confidence 00 01124567777 67789
Q ss_pred EEEeCCCeEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-ehcccccccceEEEEE
Q 021247 217 FSASDDTHVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-MQSMTNHTDQVWGVSF 293 (315)
Q Consensus 217 ~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~ 293 (315)
+.|+.|+++++|.+.+..+.. ....|.++|++++++|++.+||++...+.|.+||+.+++. ...+.-|+..|.+++|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence 999999999999998765433 4567999999999999999999999999999999998765 3445669999999999
Q ss_pred eeCCCEEEEEeCCCcEEEeecC
Q 021247 294 RPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 294 s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+|+..+||+|+.|..|.||++.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCCceEEEeccccceEEEEEcc
Confidence 9999999999999999999863
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.6e-41 Score=285.22 Aligned_cols=270 Identities=23% Similarity=0.409 Sum_probs=233.5
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS 94 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~ 94 (315)
..|+|..|+++.. +||.|-.|..|++|.+...++.+ +++. . +...+=+.+.|-.+.+.|-.....
T Consensus 379 ~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~kl~~-lk~~-~---------~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 379 QGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKKLKK-LKDA-S---------DLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CcceeEeecCCcc----hhhccccccEEEEEecchhhhcc-ccch-h---------hhccccccccchhhhhccccCCce
Confidence 4688888888664 78888899999999876554422 2211 1 111111234444466777777767
Q ss_pred eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247 95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA 174 (315)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 174 (315)
..++-+|.++|..++|+|+.++ +++++.|+++|+|.+.+...+..+. +|..+|..+.|+|.|.+||
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~-------------GH~~PVwdV~F~P~GyYFa 509 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYK-------------GHLAPVWDVQFAPRGYYFA 509 (707)
T ss_pred eEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEec-------------CCCcceeeEEecCCceEEE
Confidence 7778899999999999999875 5789999999999999987776663 4566799999999999999
Q ss_pred EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC
Q 021247 175 CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD 254 (315)
Q Consensus 175 ~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 254 (315)
+++.|++.++|......++..+.+|...|.|+.|+| +..++++|+.|.++++||..++..++.+.||.++|.+++++|.
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 255 GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 255 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|++|++|+.||.|.+||+..++.+.++.+|++.|.++.||++|..||++|.|.+|++||+
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999997
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-40 Score=247.72 Aligned_cols=244 Identities=27% Similarity=0.392 Sum_probs=208.8
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
+.||+-.|..+.-+++++ +.+++|+|+++++||..+++..+.+.||...|.+++|+++..++++|+.|++|++||.
T Consensus 59 ~~GHsH~v~dv~~s~dg~----~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGN----FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeccceEecceEEccCCc----eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 568999999999999886 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeeCC-cccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247 90 DTNASIATLEAS-PSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS 167 (315)
Q Consensus 90 ~~~~~~~~~~~~-~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 167 (315)
.........+.. .+-|.+++|+|+. +.++++++.|+++++||+++.+....+ .+|..+++.++++
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-------------~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-------------IGHSGYVNTVTVS 201 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-------------ccccccEEEEEEC
Confidence 876655554444 7789999999985 567789999999999999987655444 2466789999999
Q ss_pred CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec------
Q 021247 168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG------ 241 (315)
Q Consensus 168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------ 241 (315)
|||..+++|+.||.+.+||++.++.++.+. |..+|.+++|+| +. +.+.+.-+..|+|||+..+..+..+..
T Consensus 202 pDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 202 PDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred CCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-Cc-eeEeeccCCceEEEeccchhhhhhccccccccc
Confidence 999999999999999999999998877665 778999999999 43 455555566699999998876655431
Q ss_pred ---ccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 242 ---HASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 242 ---~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
......+++|+++|+.|+.|-.|+.|++|.+.
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 13345788999999999999999999999875
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-39 Score=253.64 Aligned_cols=285 Identities=24% Similarity=0.338 Sum_probs=241.1
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
..|+++|++|+-.|.. .+++||+.|..-.+|+..++.....+.+|+..|+++.|+.+|.+|++|+-+|.|+||+..
T Consensus 61 ~~H~~svFavsl~P~~----~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNN----NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hhcCCceEEEEeCCCC----ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 5899999999999932 489999999999999999999888999999999999999999999999999999999999
Q ss_pred CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG 170 (315)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (315)
++.....+...-+.+.-+.|||.+. ++++|+.||.+.+|.+.+....+.+. +|...+++=.|.|+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-------------Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-------------GHNSPCTCGEFIPDG 202 (399)
T ss_pred cCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-------------CCCCCcccccccCCC
Confidence 9998888876667788899999766 56789999999999998754444442 355568888999999
Q ss_pred CEEEEecCCCcEEEEEcccceeeeeecC------C---------------------------------------------
Q 021247 171 RRIACGSMDGTISVFDVTRAKFLHHLEG------H--------------------------------------------- 199 (315)
Q Consensus 171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~~------~--------------------------------------------- 199 (315)
+.++++..||+|++|++.+++++..+.. +
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 9999999999999999998887665431 0
Q ss_pred ccceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247 200 FMPVRSLVYSPV--DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277 (315)
Q Consensus 200 ~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 277 (315)
...+.++.+.|. .-.+.+.|+.||+|.|||+...++.... .|...|+.+.|-+ ..+|++++.||.|+.||.+++..
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 001112222221 1236788899999999999877665544 4778899999998 67899999999999999999999
Q ss_pred ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 278 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+.++.+|...|.+.+++|++++++++|.|++.+||+..
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999999863
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-39 Score=245.68 Aligned_cols=254 Identities=22% Similarity=0.301 Sum_probs=224.9
Q ss_pred ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247 52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d 131 (315)
..+.++||.+.|.++.|+++.+.+++++.||.+.|||.-+...+..+......|..++|+|+++.+ ++|+-|+.+.||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V-AcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV-ACGGLDNKCSIYP 125 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeE-EecCcCceeEEEe
Confidence 347789999999999999999999999999999999999988888888888899999999999854 6788999999999
Q ss_pred cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211 (315)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 211 (315)
+.+.+..... ....+..+|..++.++.|-+ ...|++++.|.+..+||+++++.+..+.+|.+.|.++.++|.
T Consensus 126 ls~~d~~g~~-------~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 126 LSTRDAEGNV-------RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS 197 (343)
T ss_pred cccccccccc-------eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC
Confidence 8743111111 01112356788899999987 567899999999999999999999999999999999999998
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc--ccceE
Q 021247 212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH--TDQVW 289 (315)
Q Consensus 212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~ 289 (315)
+++.+++|+-|++.++||++.+..++.+.+|...|+++.|.|+|.-+++|+.|++.|+||++....+..+... ...|+
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 8999999999999999999999999999999999999999999999999999999999999987777776533 35799
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 290 GVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 290 ~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+|+||..|++|++|..|.++.+||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeec
Confidence 9999999999999999999999984
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=240.05 Aligned_cols=293 Identities=25% Similarity=0.379 Sum_probs=234.7
Q ss_pred CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---Ccceee-ccccccceEEEEeCCCCCEEE
Q 021247 1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERT-NTGHCLGVVSVAAHPSGIIAA 76 (315)
Q Consensus 1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~-~~~h~~~v~~~~~~~~g~~l~ 76 (315)
|..+-....+.+|.+.||.++|.|.. ..+|||||.|..|++|+... ..+... -.+|+..|.+++++|.|++|+
T Consensus 1 m~~l~~~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 1 MDRLILEQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred CccceeEEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE
Confidence 33444556678999999999999962 12799999999999998763 222222 257999999999999999999
Q ss_pred EeeCCCeEEEEECCCC--ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247 77 SASLDSFVRVFDVDTN--ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK 154 (315)
Q Consensus 77 s~~~d~~i~~w~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (315)
+|+.|.++-||.-..+ +++.++++|.++|.+++|+++|+++ ++++.|..|-+|.+........... .
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~deddEfec~aV----------L 146 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEIDEDDEFECIAV----------L 146 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEecCCCcEEEEee----------e
Confidence 9999999999998755 5788999999999999999999865 7899999999999875443322211 1
Q ss_pred CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-cc--eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-RA--KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 231 (315)
..|..-|..+.|+|...+|++++.|++|++|+-. .. .+.+.+.+|+..|.+++|+| .+..|+++++|++++||-..
T Consensus 147 ~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeec
Confidence 1234447889999999999999999999999865 22 45788999999999999998 56789999999999999754
Q ss_pred CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc---c---e-ehcccccccceEEEEEeeC-CCEEEEE
Q 021247 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR---A---A-MQSMTNHTDQVWGVSFRPL-GGRVVSV 303 (315)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~---~-~~~~~~~~~~v~~~~~s~~-~~~l~s~ 303 (315)
.. ....|+..+..+.|. ...++|++.|+.|++|.-... . . .+.-..|+..|++|.|.|. .++|+++
T Consensus 226 ~~----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 226 TD----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred cC----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 21 112467788899998 447999999999999976542 1 1 1223468889999999995 6789999
Q ss_pred eCCCcEEEeec
Q 021247 304 SDDKSISLYEY 314 (315)
Q Consensus 304 ~~d~~i~i~~~ 314 (315)
|+||.|++|.+
T Consensus 300 ~DDG~v~~W~l 310 (312)
T KOG0645|consen 300 GDDGIVNFWEL 310 (312)
T ss_pred CCCceEEEEEe
Confidence 99999999986
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-40 Score=263.02 Aligned_cols=291 Identities=21% Similarity=0.322 Sum_probs=243.4
Q ss_pred chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---CcceeeccccccceEEEEeCCCCCEEEEeeCC
Q 021247 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASLD 81 (315)
Q Consensus 5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d 81 (315)
+...++..|+++||-+.|+|.++ +|||||.|.+..+|.... .++.+++.+|..+|..+.|+||.+++++++.|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGk----yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGK----YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCe----eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 45567889999999999999887 799999999999998643 34567788999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEeeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 82 SFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
..+++||+.++.+...+... ...+.+++|.|+|..+ ++|+.|+++..||+.. +....+.. .....
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlDg-n~~~~W~g------------vr~~~ 356 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLDG-NILGNWEG------------VRDPK 356 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCCc-chhhcccc------------cccce
Confidence 99999999999988776554 5678999999999875 6899999999999964 33322211 11123
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 240 (315)
|.+++..+||+++++...|..|++++.++........ ...+|+++..+. ++++++..-.+..+++||++...++..+.
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 8899999999999999999999999987655443333 346899999997 77888888899999999999888888888
Q ss_pred ccccc--EEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEeCCCcEEEeecC
Q 021247 241 GHASW--VLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVSDDKSISLYEYS 315 (315)
Q Consensus 241 ~~~~~--i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~ 315 (315)
||... |..-+|-. +..++++|+.|+.|+||+..+++++.++.+|...|++|+|+|... ++|++|+||+||||..+
T Consensus 435 Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 435 GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 88543 44445554 447999999999999999999999999999999999999999754 67999999999999753
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-38 Score=294.40 Aligned_cols=283 Identities=20% Similarity=0.323 Sum_probs=234.2
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----c----ceeeccccccceEEEEeCC-CCCEEEEeeCC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----Q----LERTNTGHCLGVVSVAAHP-SGIIAASASLD 81 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~----~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d 81 (315)
.+|...|++++|+|.+. ++++|+.|+.|++|+.... . ..... .+...+.+++|++ .+.++++++.|
T Consensus 480 ~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~D 554 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFE 554 (793)
T ss_pred cCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCC
Confidence 35899999999999765 7999999999999986431 1 01112 2345788999987 47899999999
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (315)
++|++||+.+++.+..+..|...|++++|+|....++++|+.|++|++||+++++.+..+.. ...+
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--------------~~~v 620 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--------------KANI 620 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--------------CCCe
Confidence 99999999999988899999999999999985545678899999999999998776655532 1237
Q ss_pred EEEEEC-CCCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC------C
Q 021247 162 LSVAWS-PDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG------K 233 (315)
Q Consensus 162 ~~~~~~-~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~ 233 (315)
.++.|+ +++.+|++|+.||.|++||++..+ .+..+.+|...|.++.|. ++..+++++.|+.|++||+.. .
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 889995 578999999999999999998765 466778899999999997 466899999999999999874 2
Q ss_pred eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-------------cccccccceEEEEEeeCCCEE
Q 021247 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-------------SMTNHTDQVWGVSFRPLGGRV 300 (315)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~v~~~~~s~~~~~l 300 (315)
..+..+.+|...+..+.++|++.+|++|+.|+.|++|+.....+.. ....|...|.+++|+|++..|
T Consensus 699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l 778 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL 778 (793)
T ss_pred cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence 4667788999999999999999999999999999999976443221 112345679999999999999
Q ss_pred EEEeCCCcEEEeec
Q 021247 301 VSVSDDKSISLYEY 314 (315)
Q Consensus 301 ~s~~~d~~i~i~~~ 314 (315)
++++.||+|+||++
T Consensus 779 va~~~dG~I~i~~~ 792 (793)
T PLN00181 779 VAANSTGNIKILEM 792 (793)
T ss_pred EEecCCCcEEEEec
Confidence 99999999999986
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-39 Score=271.24 Aligned_cols=290 Identities=22% Similarity=0.348 Sum_probs=259.7
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~ 83 (315)
+.+..-...|++.|-+|.+.|..+ -++++-.+|.|.||+.++..+.+.+.-...||.+..|-+..+.+++|+.|..
T Consensus 3 l~~krk~~~rSdRVKsVd~HPteP----w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~ 78 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEP----WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ 78 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCc----eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCce
Confidence 344445567999999999999765 6888899999999999999999988878889999999999999999999999
Q ss_pred EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
||+++.++.+.+..++.|++-|.+++.||...++ +++++|-+|++||-... .+..+ ..+|..+|.
T Consensus 79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v-LtsSDDm~iKlW~we~~wa~~qt-------------feGH~HyVM 144 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV-LTSSDDMTIKLWDWENEWACEQT-------------FEGHEHYVM 144 (794)
T ss_pred EEEEecccceeeEEeeccccceeeeeecCCCCeE-EecCCccEEEEeeccCceeeeeE-------------EcCcceEEE
Confidence 9999999999999999999999999999998865 68899999999998642 22222 246788999
Q ss_pred EEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247 163 SVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 163 ~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 240 (315)
.++|+| |.+.|++++.|++|++|.+....+..++.+|...|+++.+-+. +..+|++|++|..+++||.++.+++..+.
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe 224 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE 224 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh
Confidence 999999 6789999999999999999999999999999999999999774 34599999999999999999999999999
Q ss_pred cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
+|...|..+.|+|.-.+++||+.||+||||+..+-+...++....+.+|+++-.+.++.++.|.++|.|.|
T Consensus 225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999999999999998888888877889999999999899999998887754
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=269.77 Aligned_cols=283 Identities=23% Similarity=0.380 Sum_probs=242.9
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeC-CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSL-DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~-d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~ 92 (315)
+.+|..++|...++ -|+-|+. =|.+-+|+.....-.....+|...+.+++++|||+++++|+.||.|+|||...+
T Consensus 307 ~~~I~t~~~N~tGD----WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 307 DQKILTVSFNSTGD----WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred cceeeEEEecccCC----EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 35778888877664 4666654 589999998766666667899999999999999999999999999999999999
Q ss_pred ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR 172 (315)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 172 (315)
-|+.++..|...|..++|+..++. +++.+-||+|+.||+..++..+++..|.+.+ ..|++..|.|..
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~Q------------fscvavD~sGel 449 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ------------FSCVAVDPSGEL 449 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCcee------------eeEEEEcCCCCE
Confidence 999999999999999999998875 5678899999999999998888887776532 679999999999
Q ss_pred EEEecCCC-cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE
Q 021247 173 IACGSMDG-TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251 (315)
Q Consensus 173 l~~~s~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 251 (315)
+.+|+.|. .|++|++.+|+.+..+.+|++||.++.|+| .+..|++++.|.+|++||+-........-.+...+..++|
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 99999988 599999999999999999999999999999 5679999999999999998665433333345677899999
Q ss_pred cCCCCeEEEEeCCCcEEEEecCccceehccc--------------------ccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMT--------------------NHTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 252 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
+|+|+-|+++..||.|.+||.+.+..+..+. ......+.+.+|+||++|++||....|.|
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 9999999999999999999987654442221 12356889999999999999999999999
Q ss_pred eec
Q 021247 312 YEY 314 (315)
Q Consensus 312 ~~~ 314 (315)
|+.
T Consensus 609 Y~v 611 (893)
T KOG0291|consen 609 YDV 611 (893)
T ss_pred EEC
Confidence 986
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.4e-41 Score=260.89 Aligned_cols=272 Identities=25% Similarity=0.440 Sum_probs=234.1
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN 92 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~ 92 (315)
-.+.|+|+++-+. .+++|..|++|++||.....+.+.+.||++.|.|+++.. ..+++|+.|.+|++||.+++
T Consensus 196 ~skgVYClQYDD~------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEecch------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCC
Confidence 3568999998542 489999999999999999999999999999999999854 59999999999999999999
Q ss_pred ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247 93 ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR 172 (315)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 172 (315)
+++.++.+|-+.|..+.|+.. ++++++.|.++.+||+.....+.-. .-..+|...|+.+.|+ .++
T Consensus 268 e~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~r----------rVLvGHrAaVNvVdfd--~ky 332 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLR----------RVLVGHRAAVNVVDFD--DKY 332 (499)
T ss_pred chhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHH----------HHHhhhhhheeeeccc--cce
Confidence 999999999999999999743 6789999999999998753211000 0113456668888876 469
Q ss_pred EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247 173 IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252 (315)
Q Consensus 173 l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 252 (315)
+++++.|.+|++|++.++.++..+.+|...|.++.+ .++++++|+.|.+|++||+..+.++..+++|..-|.++.|+
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 999999999999999999999999999999988875 57899999999999999999999999999999999999996
Q ss_pred CCCCeEEEEeCCCcEEEEecCccc---------eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 253 PDGAAITTGSSDRTVKLWDLNMRA---------AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 253 ~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+.+++|+.||+|++||+..+. ++.++..|++.|..+.|.. ..+++.+-|.+|.||||
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDF 476 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEc
Confidence 4579999999999999997653 2445567899999999965 48999999999999997
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=262.65 Aligned_cols=251 Identities=25% Similarity=0.417 Sum_probs=223.7
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc-cceEEEEeCCCCCEEEEeeCCC
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVVSVAAHPSGIIAASASLDS 82 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l~s~~~d~ 82 (315)
..++.++.+|+.+|.++.|++.+. .++||+.+|.||+|++.. ...+.+.+|. ..|++++|+|....+++++.|+
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg 202 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG 202 (464)
T ss_pred eeHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCC
Confidence 467889999999999999999876 699999999999999754 4445555554 8999999999999999999999
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
+|+|||....+....+.+|.-.|.+++|+|... ++++++.|..|++||.++++++.++. .|+..|.
T Consensus 203 ~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh-------------~HKntVl 268 (464)
T KOG0284|consen 203 TIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLH-------------GHKNTVL 268 (464)
T ss_pred eEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhh-------------hccceEE
Confidence 999999998888778899999999999999876 56789999999999999998887663 4666799
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE-eec
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA-MSG 241 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~ 241 (315)
.+.|+|++++|+++|.|..++++|+++.+.+..+++|+..++++.|+|-...+|.+|+.||.|..|.....+.+.. -.+
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A 348 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA 348 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc
Confidence 9999999999999999999999999988889999999999999999999999999999999999999874444433 357
Q ss_pred ccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 349 Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 349 HDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999999999999999999999999999653
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-39 Score=276.09 Aligned_cols=250 Identities=28% Similarity=0.435 Sum_probs=219.3
Q ss_pred EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECC
Q 021247 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDP 112 (315)
Q Consensus 33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~ 112 (315)
+=+++.|-.+.+.|.+.....+.+.||.++|..+.|+|+.++|++++.|+++|+|.+.+..++..+++|..|||.++|+|
T Consensus 424 ~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 424 IDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred ccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 45666676778888777777788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee
Q 021247 113 KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF 192 (315)
Q Consensus 113 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~ 192 (315)
.|-+ +++++.|++.++|.....+..+.+.. |..-+.|+.|+|+.+++++||.|.++++||+.++..
T Consensus 504 ~GyY-Fatas~D~tArLWs~d~~~PlRifag-------------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 504 RGYY-FATASHDQTARLWSTDHNKPLRIFAG-------------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred CceE-EEecCCCceeeeeecccCCchhhhcc-------------cccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence 9765 57889999999999877555544432 333488999999999999999999999999999999
Q ss_pred eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
+..+.+|..+|.+++|+| ++++|++|+.|+.|++||+.+++++..+.+|.+.|.++.|+.+|.+||+||.|++|++||+
T Consensus 570 VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 570 VRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccccee------------------------hcccccccceEEEEEeeCC
Q 021247 273 NMRAAM------------------------QSMTNHTDQVWGVSFRPLG 297 (315)
Q Consensus 273 ~~~~~~------------------------~~~~~~~~~v~~~~~s~~~ 297 (315)
...... ..+.....+|.++.|...+
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 649 TKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred hhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 643222 1223334578888888765
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=234.35 Aligned_cols=279 Identities=24% Similarity=0.383 Sum_probs=240.1
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
++..|+++|.++.|.-+++ +.++++.|.+|++|++..+.++++..+|...|..++.+.++..+++++.|+.+.+||
T Consensus 12 ~l~~~qgaV~avryN~dGn----Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGN----YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eecccccceEEEEEccCCC----EEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 4578999999999998876 799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc-cCCCCcceEEEEEC
Q 021247 89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD-KSSSKKFVLSVAWS 167 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 167 (315)
+++++.++.+.+|...|+.++|+.+.. ++++|+.|..+++||.++... +|.+ ....++.|.++..+
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~------------ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSF------------EPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCC------------CccchhhhhcCceeEEEec
Confidence 999999999999999999999998765 678999999999999986321 1111 12234557777775
Q ss_pred CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247 168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247 (315)
Q Consensus 168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 247 (315)
+..+++|+.||+++.||++.++......+| ||+++.|++ +++..+.++.|+++++.|..++++++.+.+|...=.
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey 229 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY 229 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhccccccee
Confidence 568999999999999999999887766665 899999998 778899999999999999999999999999976544
Q ss_pred --EEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc-eEEEEEeeCCCEEEEEeCCCcE
Q 021247 248 --SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ-VWGVSFRPLGGRVVSVSDDKSI 309 (315)
Q Consensus 248 --~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d~~i 309 (315)
..+++.....+++|+.||.|.+||+.....+..+..+... +.+++++|....++++...+..
T Consensus 230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred eeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 4456666789999999999999999988888778777776 8999999998888777665443
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=272.71 Aligned_cols=284 Identities=21% Similarity=0.368 Sum_probs=250.9
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
..+..|-+++|.|..+ -++++-..|.|++||+..+.++..+.+|.++|..+.|||+..+++||+.|..|++|+..+
T Consensus 7 skSsRvKglsFHP~rP----wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRP----WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccccccceecCCCCC----EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 4567899999999765 689999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
.+++.++.+|.+-|..+.||+.-..+ +++++|.+|+||+..+.++++.++ +|..+|.|..|+|...
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWI-lSASDDQTIrIWNwqsr~~iavlt-------------GHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWI-LSASDDQTIRIWNWQSRKCIAVLT-------------GHNHYVMCAQFHPTED 148 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceE-EEccCCCeEEEEeccCCceEEEEe-------------cCceEEEeeccCCccc
Confidence 99999999999999999999987754 688999999999999999988774 5777899999999999
Q ss_pred EEEEecCCCcEEEEEcccce-----------------------------eeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247 172 RIACGSMDGTISVFDVTRAK-----------------------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
.++++|.|.+|++||+...+ ....+.+|...|+-++|+|.- .+++||++|
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DD 227 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADD 227 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCc
Confidence 99999999999999974211 113456899999999999954 499999999
Q ss_pred CeEEEEeCCCCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247 223 THVHMYDAEGKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV 300 (315)
Q Consensus 223 ~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 300 (315)
+.|++|.+...+ .+....+|.+.|.++-|+|...+++|.|.|++|||||+..+..++++....+..|.++-+|..+ |
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN-L 306 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN-L 306 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc-e
Confidence 999999987543 4567789999999999999999999999999999999999999999988889999999999987 5
Q ss_pred EEEeCCCcEEEeecC
Q 021247 301 VSVSDDKSISLYEYS 315 (315)
Q Consensus 301 ~s~~~d~~i~i~~~~ 315 (315)
++++-|+-+.+|.++
T Consensus 307 fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLE 321 (1202)
T ss_pred eeeecCCceEEEEEc
Confidence 555666767787763
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-39 Score=270.43 Aligned_cols=301 Identities=26% Similarity=0.404 Sum_probs=243.4
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCC--EEEEeeCCCeEEEE
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI--IAASASLDSFVRVF 87 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~~~d~~i~~w 87 (315)
...|+.||..++|.|.+ .++++|+.|+.|++||+....+...++||.+.|.++.|+|+-+ +|++|+.|+++++|
T Consensus 101 Ka~He~Pvi~ma~~~~g----~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTG----TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred hhccCCCeEEEEEcCCC----ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 34599999999999976 3899999999999999999999999999999999999999764 58899999999999
Q ss_pred ECCCCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC----------CC-----------
Q 021247 88 DVDTNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI----------PR----------- 145 (315)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----------~~----------- 145 (315)
|+++.. ++.+...|...|.++.+.+++..+ ++.+.|..+.+||+.+.+...+++. +.
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~-ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLEL-LSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceE-EEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 999654 466778889999999999987654 5667888888888754322111110 00
Q ss_pred -----------------------CCC-------------------------------C-------------------CC-
Q 021247 146 -----------------------PEG-------------------------------L-------------------KP- 151 (315)
Q Consensus 146 -----------------------~~~-------------------------------~-------------------~~- 151 (315)
+.. . .+
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence 000 0 00
Q ss_pred -----------------------CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce----eeeeecCCccceE
Q 021247 152 -----------------------TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK----FLHHLEGHFMPVR 204 (315)
Q Consensus 152 -----------------------~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~ 204 (315)
.-..+|...|.++....+|.+|++|+.|.++++|.+..+. ++....+|+..|.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 0012345556677755667899999999999999884433 3455678999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-----eEE----EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247 205 SLVYSPVDPRVLFSASDDTHVHMYDAEGKS-----LVT----AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275 (315)
Q Consensus 205 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~----~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 275 (315)
+++++.....+|++++.|+++++|++...+ .+. ....|...|++++++|+..+++|||.|.+.+||++...
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 999988788899999999999999987521 111 23468999999999999999999999999999999999
Q ss_pred ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 276 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..+.++.+|...||+|.|+|+.+.++++|.|++|+||.++
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 9999999999999999999999999999999999999874
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.2e-38 Score=248.38 Aligned_cols=291 Identities=28% Similarity=0.409 Sum_probs=234.9
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC---CCCEEEEeeCCCeEEEEE
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP---SGIIAASASLDSFVRVFD 88 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~---~g~~l~s~~~d~~i~~w~ 88 (315)
-|++.|.+|.-.+ .-++||++||.+++|+. .++..+++.||.+++.++.+.. ....+++++.|.++++|.
T Consensus 103 ~hdDWVSsv~~~~------~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS------KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhcccC------ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 5778888876552 36999999999999986 5677888999999999877643 334699999999999999
Q ss_pred CCCCcee----EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc--ceeeeecCCC-------CC---CCCCC
Q 021247 89 VDTNASI----ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW--NLIATLSIPR-------PE---GLKPT 152 (315)
Q Consensus 89 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~-------~~---~~~~~ 152 (315)
.+.+... ..-.+|...|.+++..+++..+ ++|+.|.+|++|+..+. ..+......+ ++ ..+..
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~-~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRF-CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeE-EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 9887543 2335899999999999998854 78999999999993221 1111111100 00 11112
Q ss_pred ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
...+|...|..+.|++ ...+++++.|.+|+.||+.++.....+.+ ..+..++..+| ...+|++|+.|..|++||.+.
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCC
Confidence 3457888899999998 67889999999999999999998877764 45789999998 678999999999999999985
Q ss_pred C---eeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccc-eehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 233 K---SLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 233 ~---~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
+ -....+.+|.++|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|.. +..|++||.|.
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~ 410 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN 410 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence 4 3456788999999999999964 578999999999999999866 8999999999999999986 56899999999
Q ss_pred cEEEeec
Q 021247 308 SISLYEY 314 (315)
Q Consensus 308 ~i~i~~~ 314 (315)
+|+||..
T Consensus 411 ~l~i~~~ 417 (423)
T KOG0313|consen 411 KLRIFKG 417 (423)
T ss_pred eEEEecc
Confidence 9999974
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-38 Score=265.93 Aligned_cols=293 Identities=27% Similarity=0.420 Sum_probs=253.3
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
..+|+.+|-+++++.+.. +++| +..+++++|+.++.++.+++.. +.+.+..|.|.+.+++.|...|.+.++|+
T Consensus 369 ~~GHR~dVRsl~vS~d~~----~~~S-ga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSI----LLAS-GAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eccchhheeEEEeecCce----eeee-cCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 369999999999997653 3444 4568999999999999888764 37889999999999999999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC--ccCCCCcceEEEEEC
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT--DKSSSKKFVLSVAWS 167 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 167 (315)
.....+.+++.|.+.+|.++..|++..+ ++|+.|.+|++||..-. ...+..+..-+... ..-.-...|.|+.+|
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~---~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLV---VSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEE---eccCcccceeeeeccceEEeccccEEEEEEc
Confidence 9999999999999999999999999876 68899999999997421 11100000000000 001123458999999
Q ss_pred CCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247 168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247 (315)
Q Consensus 168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 247 (315)
|||++|+++-.|+++++|-+.+.+..-.+.||.-||.++..+| ++.++++|+.|..|++|-++-+.+-+.+-+|.+.|+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 9999999999999999999999999999999999999999998 789999999999999999999989888999999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
++.|-|....+.|+|.|+.|+-||....+.++.+.+|...||+++.+|+|.+++++|.|.+||+|.-
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=233.92 Aligned_cols=286 Identities=20% Similarity=0.302 Sum_probs=236.6
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
.+.+|+.+++.+.+...+. +|+|++.|.++.+|-..+++.+-...||++.|.++.++.+...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCc----EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 4578999999999987765 899999999999998888999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeCCcccEEEEEECCCCCeEEEEec----CCCeEEEEecCCcc-------eeeeecCCCCCCCCCCccCCC
Q 021247 89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG----GSASVKLWDTATWN-------LIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 157 (315)
+++++.+.+++. +.+|..+.|++.++.++++.. ..+.|.++|++... +...+.. +
T Consensus 81 v~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-------------~ 146 (327)
T KOG0643|consen 81 VETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-------------P 146 (327)
T ss_pred cCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-------------C
Confidence 999999988874 578999999999998776542 24679999988422 1222211 1
Q ss_pred CcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 158 ~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
...++.+-|.|.+++|++|.+||.|.+||+++++ .+..-..|...|+.+.++| +..++++++.|.+-++||..+.+++
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeE
Confidence 2348899999999999999999999999999975 4556678999999999998 6789999999999999999999888
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcE--------------EEEecCccceehcccccccceEEEEEeeCCCEEEE
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTV--------------KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS 302 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i--------------~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 302 (315)
+.+.. ..++++.+++|....++.|+....- |+|++-..+.+..+.+|-++|++|+|||+|+..++
T Consensus 226 Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 226 KTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred EEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence 88764 4578999999976666555543322 22222223345557899999999999999999999
Q ss_pred EeCCCcEEEeec
Q 021247 303 VSDDKSISLYEY 314 (315)
Q Consensus 303 ~~~d~~i~i~~~ 314 (315)
||.||.|||.-+
T Consensus 305 GGEDG~VR~h~F 316 (327)
T KOG0643|consen 305 GGEDGYVRLHHF 316 (327)
T ss_pred CCCCceEEEEEe
Confidence 999999999754
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-36 Score=255.66 Aligned_cols=298 Identities=24% Similarity=0.346 Sum_probs=250.1
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
.+|-++|.++.|+.+.+ +|++||.|-++++|..+..+- ...+.+|..+|..+.|..+..-+.+.+.||.+.+|.
T Consensus 142 ~g~fddi~si~Ws~DSr----~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~ 217 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSR----LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWT 217 (893)
T ss_pred cCCccceeEEEeccCCc----eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEE
Confidence 58999999999999876 799999999999999876554 556789999999999999999999999999999998
Q ss_pred CCCC-----------------------ce-----eE------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247 89 VDTN-----------------------AS-----IA------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134 (315)
Q Consensus 89 ~~~~-----------------------~~-----~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 134 (315)
.... +. +. -+...+..+.+.+||+..+ ++++|=..|...+|++..
T Consensus 218 ~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 218 CDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPD 296 (893)
T ss_pred ecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCC
Confidence 8711 00 00 0111235688899998654 667888889999999988
Q ss_pred cceeeeecCCCCC------------------------------CCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEE
Q 021247 135 WNLIATLSIPRPE------------------------------GLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184 (315)
Q Consensus 135 ~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i 184 (315)
.++++.+.+.... ......+.+|...+++++++|||+++++|+.||.|++
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 8777766554221 0112223456777999999999999999999999999
Q ss_pred EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcCCCCeEEEEeC
Q 021247 185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASPDGAAITTGSS 263 (315)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~ 263 (315)
||...+-+..++..|+..|+.+.|+. .++.+++++.||+++.||++....-+.+.. ......+++.+|.|.++.+|+.
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 99999999999999999999999997 788999999999999999988766666543 3344678999999999999999
Q ss_pred CCc-EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 264 DRT-VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 264 d~~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|.. |.+|++.+|+.+..+.+|+++|.+++|+|.|..|+++|.|++||+|+.
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 975 999999999999999999999999999999999999999999999986
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-38 Score=244.12 Aligned_cols=247 Identities=26% Similarity=0.377 Sum_probs=227.1
Q ss_pred cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247 51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130 (315)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~ 130 (315)
++.+.+.+|.+-|.++++.|.+..+++|+.|++|+|||+.+++...++.+|...|..+++++...++ ++++.|++|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYl-Fs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYL-FSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceE-EEecCCCeeEEE
Confidence 3455678999999999999999999999999999999999999999999999999999999987765 678899999999
Q ss_pred ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 210 (315)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 210 (315)
|+...+.+..+ .+|-..|.+++.+|.-+.|++|+.|..+++||+++...+..+.+|..+|..+.+.|
T Consensus 221 DLe~nkvIR~Y-------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 221 DLEYNKVIRHY-------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred echhhhhHHHh-------------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 99987776655 34556699999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEE
Q 021247 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG 290 (315)
Q Consensus 211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 290 (315)
.++ .+++|+.|++|++||+..++-+..+..|...+.+++.+|....+++++.|. |+-|++..+..++.+.+|+..+++
T Consensus 288 ~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 288 TDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred CCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeee
Confidence 776 578999999999999999999999999999999999999999999999886 899999999999999999999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEeec
Q 021247 291 VSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 291 ~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
++...|| .+++|++.|.|..||+
T Consensus 366 l~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 366 LSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred eeeccCc-eEEEcCCceEEEEEec
Confidence 9998875 8999999999999997
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=227.09 Aligned_cols=261 Identities=24% Similarity=0.394 Sum_probs=219.9
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
+..|+.++-.|+.. +|++|+ .-.|++||....+ ....+.+|+.-|.++.|..+|+.+++|+.||++||||++.
T Consensus 40 dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 40 DSQVNRLEITPDKK----DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred ccceeeEEEcCCcc----hhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 34789999888765 355555 5789999987544 4667889999999999999999999999999999999999
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
..+.+.++ +..+|.++..+|+...+ ++|..+|.|++||+........+ +|+. ...|.++...|+|.
T Consensus 115 ~~~qR~~~-~~spVn~vvlhpnQteL-is~dqsg~irvWDl~~~~c~~~l-iPe~-----------~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 115 LSCQRNYQ-HNSPVNTVVLHPNQTEL-ISGDQSGNIRVWDLGENSCTHEL-IPED-----------DTSIQSLTVMPDGS 180 (311)
T ss_pred cccchhcc-CCCCcceEEecCCcceE-EeecCCCcEEEEEccCCcccccc-CCCC-----------CcceeeEEEcCCCc
Confidence 66655555 56999999999987765 57889999999999864333322 1111 13489999999999
Q ss_pred EEEEecCCCcEEEEEcccc------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccc
Q 021247 172 RIACGSMDGTISVFDVTRA------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHAS 244 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~ 244 (315)
+++++...|..++|++.+. .++.+++.|+.-+..+.++| +.++|++++.|.+++||+.++. +.-..+.+|..
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 9999999999999998654 34567788999999999999 7889999999999999999887 55567789999
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247 245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR 294 (315)
Q Consensus 245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 294 (315)
|+++.+||.++++|+||+.|+.+++|++..++.+.+..+|-....+++..
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999999999999999999999999998887777754
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-38 Score=244.84 Aligned_cols=247 Identities=28% Similarity=0.445 Sum_probs=223.2
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 133 (315)
..+.+|..+|..+-++|+-.++++++.|.+|++||..+++....+++|.+.+..++|+..|++ +++++.|-.+++||..
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~-l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKY-LATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccE-EEecCCccchhheeHH
Confidence 345678899999999999999999999999999999999999999999999999999999975 5788999999999987
Q ss_pred Cc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247 134 TW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (315)
+. +++.. ..+|...|.+++|-|.|.++++++.|.+|+.|++.++-++..+.+|..-|+.+..+. +
T Consensus 181 ~~~~c~ks-------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-D 246 (406)
T KOG0295|consen 181 TFFRCIKS-------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-D 246 (406)
T ss_pred HHHHHHHH-------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-C
Confidence 52 22211 124555689999999999999999999999999999999999999999999999886 7
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC---------------CCeEEEEeCCCcEEEEecCccce
Q 021247 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD---------------GAAITTGSSDRTVKLWDLNMRAA 277 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~s~~~d~~i~iwd~~~~~~ 277 (315)
+.++++++.|.++++|-..+++.+..++.|.-+|-+++|-|. ++++++++.|++|++||+.++.+
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 889999999999999999999888889999999999998763 25999999999999999999999
Q ss_pred ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 278 MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 278 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+-++.+|...|.+++|+|-|+||+++.+|+++++||+.
T Consensus 327 L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 327 LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 99999999999999999999999999999999999974
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-37 Score=230.27 Aligned_cols=295 Identities=24% Similarity=0.283 Sum_probs=254.7
Q ss_pred CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC
Q 021247 1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL 80 (315)
Q Consensus 1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~ 80 (315)
|+.+|...+-.+|+.+|-.++|+|-.+. .-+|++++.|+.-.+-+-+++.-+..+.||.++|.+...+.+....++++.
T Consensus 1 ~~~~~~pl~c~ghtrpvvdl~~s~itp~-g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 1 MAMRQTPLTCHGHTRPVVDLAFSPITPD-GYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred CCcccCceEEcCCCcceeEEeccCCCCC-ceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence 6778888889999999999999997642 347899999999999998999888999999999999999999999999999
Q ss_pred CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
|=+-++||..++..+..++ |..-|..++|+.+.+++ ++|+.+.-+++||+... ..+|.+...|...
T Consensus 80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~l-ltgg~ekllrvfdln~p------------~App~E~~ghtg~ 145 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYL-LTGGQEKLLRVFDLNRP------------KAPPKEISGHTGG 145 (334)
T ss_pred cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhh-hccchHHHhhhhhccCC------------CCCchhhcCCCCc
Confidence 9999999999998887776 56678899999888765 68888999999998642 2334455677788
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 240 (315)
|+.+-|....+.+++++.|+.|++||.+++..++.+.- +.+|+++..++ +++ +++-...+.|++||.+...+++.+.
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~-dG~-ilTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQ-DGR-ILTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeecc-CCC-EEEEecCceeEEeccccccceeecc
Confidence 99999999899999999999999999999999888763 45789999997 444 5566677789999999887776654
Q ss_pred cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
- ...|.+..++|+...++.|+.|..++.||..+++.+..+ .+|-++|.+|.|+|+|..-++||+||+||||+.
T Consensus 223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 2 445888899999999999999999999999999888775 789999999999999999999999999999985
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-36 Score=223.80 Aligned_cols=285 Identities=22% Similarity=0.316 Sum_probs=232.8
Q ss_pred ceEEEEEeecCCCCCcEEEEee-----CCCcEEEEcCCCCcceeec--cccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247 16 SVWAVTWVPATETRPALLLTGS-----LDETVKLWRPDDMQLERTN--TGHCLGVVSVAAHPSG-IIAASASLDSFVRVF 87 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs-----~d~~v~~w~~~~~~~~~~~--~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w 87 (315)
.=++|+|+|.-... ..+|++. ..|.+.|.++...+-+... ..-.+++..++|++.. +.+++++.||++++|
T Consensus 10 ~GysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 10 HGYSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred ccceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 35789999986532 2233332 3678888887533322221 2245688999999865 688889999999999
Q ss_pred ECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247 88 DVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW 166 (315)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (315)
|+... .++..++.|..+|.++.|++..+..+++++.|++|++||....+.+.++. +|...|...+|
T Consensus 89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-------------gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-------------GHNSCIYQAAF 155 (311)
T ss_pred ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-------------CCccEEEEEec
Confidence 96543 46778889999999999999988888899999999999998777776653 45667999999
Q ss_pred CC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccc
Q 021247 167 SP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHAS 244 (315)
Q Consensus 167 ~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~ 244 (315)
+| ..+.|+++|.|+.+++||++..-....+..|..++.++.|+..+.+++++|+.|+.|+.||++.- ..+..+.+|.-
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~ 235 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL 235 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce
Confidence 99 57789999999999999997544344488899999999999999999999999999999999864 56778899999
Q ss_pred cEEEEEEcCCC-CeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEeec
Q 021247 245 WVLSVDASPDG-AAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 245 ~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~ 314 (315)
.|..+.|||.. .+|++++.|=++||||.... ..+++...|++-+..+.||+. +.++|+++.|+.+.||+.
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999964 58899999999999999854 456777889999999999985 678999999999999983
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=241.42 Aligned_cols=283 Identities=25% Similarity=0.316 Sum_probs=238.1
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR 85 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~ 85 (315)
-++..|..+|..+.|.+... .|++|+.|..|++|+....+ +...+.|..++++++.+.+++..+++++.|+.++
T Consensus 169 ~~ld~h~gev~~v~~l~~sd----tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSD----TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhccccccceeEEccCcc----hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 45789999999999998654 59999999999999976555 5566778888999999999999999999999999
Q ss_pred EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
+|++...+...++.+|.+.|.++.|.-.... +++|+.|.+|++||+....+..++... ..+..++
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~--------------S~cnDI~ 309 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPG--------------SQCNDIV 309 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheecccccc--------------ccccceE
Confidence 9999999999999999999999999766554 789999999999999876655444211 1133444
Q ss_pred ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc---
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH--- 242 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--- 242 (315)
.+ ...+++|..|+.|++||.+.......+..+. .|+++..++ ++..+++++.|..+.+.|+++......+...
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccc
Confidence 44 4578999999999999999999888888765 899999998 6677788899999999999998877766532
Q ss_pred -cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc--ceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 243 -ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD--QVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 243 -~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
....+.+.|||++.|+++|+.||.|+||++.+++....+..... .|++++|+|.|..+++++.++.+.+|.
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 22367899999999999999999999999999887666544332 699999999999999999999999994
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=235.60 Aligned_cols=286 Identities=18% Similarity=0.312 Sum_probs=248.8
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc--------ccccceEEEEeCCCCCEEEEeeCC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--------GHCLGVVSVAAHPSGIIAASASLD 81 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~~~d 81 (315)
..+...-+-|..|+|+++ +|++||.||-|.+|++-++++.+.++ -+..+|.|++|+.|..++++|+.|
T Consensus 209 KFg~KSh~EcA~FSPDgq----yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQ----YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred ecccccchhheeeCCCCc----eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 345556788999999987 79999999999999998887765432 356799999999999999999999
Q ss_pred CeEEEEECCCCceeEEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 82 SFVRVFDVDTNASIATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
|.|++|.+.++.|++.++ .|...|.++.|+.++..+ ++++.|.++++..+.+++.+..+. +|..+
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi-LS~sfD~tvRiHGlKSGK~LKEfr-------------GHsSy 350 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQI-LSASFDQTVRIHGLKSGKCLKEFR-------------GHSSY 350 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchh-hcccccceEEEeccccchhHHHhc-------------Ccccc
Confidence 999999999999999886 788899999999998876 578899999999999988876553 56778
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA 238 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 238 (315)
|+...|.++|..+++++.||+|++|+..+.+++.+++ +...+|+.+...|.++..++.+...+++.+-++++.-....
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSF 430 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeee
Confidence 9999999999999999999999999999888877765 34568899999998999999999999999999886533332
Q ss_pred eec--ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 239 MSG--HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 239 ~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
..+ ..+...+...+|.|.++...+.|+.++.|...+++.-+++.-|+..+..++.+|..+.|++.+.||.+++|.
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 222 245566778999999999999999999999999999999999999999999999999999999999999996
No 45
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=238.31 Aligned_cols=279 Identities=21% Similarity=0.326 Sum_probs=227.0
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
+.+|.+.|.|++=.|.. ...++|||.||.|++||+.+..+.+.+..|.+.|..|+++. ..+++++.|.+|+.|.+
T Consensus 62 L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred ccccccccchhhcCcch---hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 57999999999977743 35799999999999999999999999999999999999987 67788999999999998
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 169 (315)
+.. ...++. ....+..+.-+..++ .++++| ..|.|||....+++..+... .+.|.++.|+|.
T Consensus 137 ~~~-p~~til-g~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG-------------~Dti~svkfNpv 198 (433)
T KOG0268|consen 137 DGP-PLHTIL-GKSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWG-------------ADSISSVKFNPV 198 (433)
T ss_pred cCC-cceeee-ccccccccccccccc-cccccC--ceeeecccccCCccceeecC-------------CCceeEEecCCC
Confidence 763 444443 344566666555444 445554 47999999876666655432 234889999995
Q ss_pred -CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEE
Q 021247 170 -GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVL 247 (315)
Q Consensus 170 -~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~ 247 (315)
-..|++|..|+.|.+||++++.++.++.. ....+.|+|+| +...+++|..|..++.||++.. ..+....+|.+.+.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEE
Confidence 45677888999999999999998877653 23557899999 8888999999999999999864 45566789999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-ccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+++|||.|+-+++|+.|.+|+||..+.+..-..+- .-.+.|.+|.||.|.+++++||+|+.|+||.
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999999999998765443321 1235799999999999999999999999996
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.7e-37 Score=238.23 Aligned_cols=229 Identities=23% Similarity=0.405 Sum_probs=202.0
Q ss_pred cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247 59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI 138 (315)
Q Consensus 59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 138 (315)
...+|.|+++ |...+++|..|.+|++||.++..+...+.+|.+.|.++.|+.. ++++|+.|.+|++||..+++++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce---EEEecCCCceEEEEeccCCchh
Confidence 3457888886 4558899999999999999999999999999999999999743 8899999999999999998877
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCCccceEEEEEcCCCCcE
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGHFMPVRSLVYSPVDPRV 215 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~ 215 (315)
.++. .|...|..+.|+. .++++++.|.++.+||+..... ...+.+|...|+.+.|+ .++
T Consensus 271 ~tli-------------hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~ky 332 (499)
T KOG0281|consen 271 NTLI-------------HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKY 332 (499)
T ss_pred hHHh-------------hhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cce
Confidence 6653 3455588888874 6999999999999999975542 34567999999999986 459
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247 216 LFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP 295 (315)
Q Consensus 216 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 295 (315)
+++++.|.+|++|++.+.+.+..+.+|.-.|.++.+ .++++++|+.|.+|++||+..|..+..+++|++-|.++.|.
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd- 409 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD- 409 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-
Confidence 999999999999999999999999999999988765 57899999999999999999999999999999999999995
Q ss_pred CCCEEEEEeCCCcEEEeec
Q 021247 296 LGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 296 ~~~~l~s~~~d~~i~i~~~ 314 (315)
.+.+++|+.||+|+|||+
T Consensus 410 -~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred -CceeeeccccceEEEEec
Confidence 569999999999999997
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-33 Score=231.41 Aligned_cols=288 Identities=19% Similarity=0.312 Sum_probs=242.3
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCCEEEEeeC--CCe
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGIIAASASL--DSF 83 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~~~--d~~ 83 (315)
.+...|.-.++-..++|.+. ++++|...|+|+||+..+.+ +..+++.-.++|..|+|+++++.+++.+. ++.
T Consensus 53 ~iYtEH~~~vtVAkySPsG~----yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSGF----YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred eeeccccceeEEEEeCCCce----EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 34578989999999999875 79999999999999975422 23345556789999999999998887653 445
Q ss_pred EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
.+++-.+++..+-.+.+|...|++++|-|...+-+++|++|++|.+|+-...+...+. ..|..+|.+
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-------------r~HskFV~~ 195 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-------------REHSKFVNC 195 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-------------cccccceee
Confidence 5555556778888899999999999999999998999999999999986543333222 246668999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccceeeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 240 (315)
+.|+|||..|++.+.||.+.+||=.+++.+..+. +|.+.|.++.|+| ++..+++++.|.++++||....++++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEee
Confidence 9999999999999999999999999999888887 8999999999999 77899999999999999999998887765
Q ss_pred ccc---ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 241 GHA---SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 241 ~~~---~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
-.. ..-..+.|. ...|++-+.+|+|.+++......++++.+|...|++++.+|++.+|++++.||.|.=|+.+
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 321 222344565 4578999999999999999989999999999999999999999999999999999999864
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=222.08 Aligned_cols=244 Identities=23% Similarity=0.399 Sum_probs=207.0
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECC
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~ 90 (315)
-++.++.|+|++... ..+++++.||++++||... .+.+..++.|...|.++.+++. +..++++++|++|++|+.+
T Consensus 59 ~~D~LfdV~Wse~~e---~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE---NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cccceeEeeecCCCc---ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence 357899999998654 4799999999999999532 2345667899999999999974 5677888999999999999
Q ss_pred CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-C
Q 021247 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-D 169 (315)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 169 (315)
....++++.+|...|...+|+|....+++++++|+++++||++..-..-.+. .|...|.++.|+. +
T Consensus 136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-------------ah~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-------------AHNSEILCCDWSKYN 202 (311)
T ss_pred CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-------------eccceeEeecccccC
Confidence 9999999999999999999999998899999999999999987532111122 2344599999998 5
Q ss_pred CCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEE
Q 021247 170 GRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVL 247 (315)
Q Consensus 170 ~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~ 247 (315)
.+.|++|+.|+.|+.||++..+ ++..+.+|...|+.++|+|....+|++++-|=++++||.. ....+.....|...+.
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC 282 (311)
T ss_pred CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe
Confidence 6678999999999999998654 5778899999999999999888999999999999999987 4456666778899999
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEec
Q 021247 248 SVDASP-DGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 248 ~~~~~~-~~~~l~s~~~d~~i~iwd~ 272 (315)
.++|++ ++.++|+.+.|+.++||+-
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccccCceeeecccccceeeecc
Confidence 999998 5678999999999999973
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-35 Score=243.79 Aligned_cols=246 Identities=24% Similarity=0.353 Sum_probs=225.9
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 133 (315)
+.+..+...|.++.+||....++++=..|.+.+||.++...++.++....||....|-+..+ -+++|++|.+|++|+..
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecc
Confidence 34455788999999999999999999999999999999999999998889999999988766 45789999999999999
Q ss_pred CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCC
Q 021247 134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~ 212 (315)
+++.+..+. .|.++|++++.+|...+++++|.|-.|++||-+.+ .+.+.+.+|.--|++++|.|.+
T Consensus 86 t~ekV~~Fe-------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 86 TGEKVKTFE-------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred cceeeEEee-------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence 988877663 57788999999999999999999999999998755 4567889999999999999999
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCC--CeEEEEeCCCcEEEEecCccceehcccccccceEE
Q 021247 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG--AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWG 290 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 290 (315)
...+++++.|++|++|.+.......++.+|...|+++++-+.| .+|+||+.|.+|+|||..++.+++++.+|...|..
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF 232 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence 9999999999999999999888888999999999999997754 69999999999999999999999999999999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEee
Q 021247 291 VSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 291 ~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+.|+|.-..+++||.||++|||.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred EEecCCCcEEEEecCCccEEEec
Confidence 99999999999999999999996
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=249.69 Aligned_cols=242 Identities=31% Similarity=0.530 Sum_probs=213.1
Q ss_pred cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec-CCc
Q 021247 59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT-ATW 135 (315)
Q Consensus 59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~ 135 (315)
+...|.++.|+++|..+++++.|+.+++|+..... ....+..|...|..++|+|++.+ +++++.|.+|++||+ ..+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~-l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSY-LLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcE-EEEecCCceEEEeeccCCC
Confidence 46789999999999999999999999999997776 56666788899999999999984 578999999999999 444
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV 215 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 215 (315)
+.+.++. +|..+|++++|+|+++.+++|+.|++|++||++++++...+.+|...|.+++|++ ++++
T Consensus 237 ~~~~~l~-------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~ 302 (456)
T KOG0266|consen 237 RNLKTLK-------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNL 302 (456)
T ss_pred eEEEEec-------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCE
Confidence 5555553 4666799999999999999999999999999999999999999999999999998 7789
Q ss_pred EEEEeCCCeEEEEeCCCCe--eEEEeeccccc--EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc---e
Q 021247 216 LFSASDDTHVHMYDAEGKS--LVTAMSGHASW--VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ---V 288 (315)
Q Consensus 216 l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---v 288 (315)
|++++.|+.|++||..++. ++..+.++... ++.+.|+|++.++++++.|+.+++||+..+....++.+|... +
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence 9999999999999999988 45666666544 899999999999999999999999999999888888888764 4
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 289 WGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 289 ~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
.+..+++.+.++++++.|+.|++|++.
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCC
Confidence 455667889999999999999999964
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=214.83 Aligned_cols=243 Identities=21% Similarity=0.272 Sum_probs=214.6
Q ss_pred eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec
Q 021247 53 ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT 132 (315)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~ 132 (315)
.+.+.++.++|..+.++-+|++.++++.|++||+||...+.++.++.+|..+|..++.+.++..+ ++|++|..+.+||.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf-~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKF-ASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccc-ccCCCCceEEEEEc
Confidence 34567899999999999999999999999999999999999999999999999999988887765 68889999999999
Q ss_pred CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--eeeeeecCCccceEEEEEcC
Q 021247 133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEGHFMPVRSLVYSP 210 (315)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~ 210 (315)
.+++.+..+. +|...|+.+.|+.+...+++|+.|..+++||-+.. ++++.+......|.++...
T Consensus 89 ~TGkv~Rr~r-------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 89 NTGKVDRRFR-------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred ccCeeeeecc-------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-
Confidence 9999988774 34556999999999999999999999999998754 5677777777888888875
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceE-
Q 021247 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW- 289 (315)
Q Consensus 211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~- 289 (315)
...+++|+.||+++.||++.+++...+.+| +|+++.|+++++.++.++.|+++++.|-.+++.++.+.+|...-.
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 457999999999999999999887776655 699999999999999999999999999999999999999975433
Q ss_pred -EEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 290 -GVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 290 -~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+.++....++++|++||.+.+||+
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEe
Confidence 4566666778999999999999996
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-34 Score=213.38 Aligned_cols=284 Identities=19% Similarity=0.323 Sum_probs=243.0
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee--ccccccceEEEEeCCC-CCEEEEeeCCCeEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPS-GIIAASASLDSFVR 85 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~ 85 (315)
-..+|...|-.|+|.-.+. .|++|+.|+++++|+.+...+.+. ..+|.+.|..++++|. ..++++++.|++|+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 3468999999999998776 599999999999999876655443 4689999999999875 47999999999999
Q ss_pred EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
+||.+.+++...+....+.+ .+.|+|+|++++ .++.|..|...|.++.+.+.... .+..+..++
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~--------------~~~e~ne~~ 154 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQ--------------FKFEVNEIS 154 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCCEEE-EecCcccEEEEEecccceeehhc--------------ccceeeeee
Confidence 99999999988877655544 578999999875 56788899999998866654432 223477899
Q ss_pred ECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 245 (315)
|+.+++.|+.....|.|.|......+++..++.|.....+|.|+| +++++++|+.|-.+-+||++..-++..+..+.=+
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCc
Confidence 998888888888889999999988999999999999999999999 7889999999999999999887777777778888
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC---------CcEEEeec
Q 021247 246 VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD---------KSISLYEY 314 (315)
Q Consensus 246 i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------~~i~i~~~ 314 (315)
|..+.|+.+|++||+|+.|..|-|=++.+|..+..++ ++++...|+|+|....||-+++| |+++||-+
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999999999999999999999999999999888774 67899999999999989877765 57888765
No 53
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-34 Score=240.03 Aligned_cols=267 Identities=19% Similarity=0.314 Sum_probs=231.0
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC-CcccEEEEEE
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA-SPSEVWQMQF 110 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~-~~~~v~~~~~ 110 (315)
+++. +.+..|++|+..+.+.......+...|+++.++++|.+|+.|..+|.|.|||....+.+..+.. |...|-+++|
T Consensus 190 ~laV-alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 190 VLAV-ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEE-EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 3444 5567899999888876666555588999999999999999999999999999999988888888 8899999999
Q ss_pred CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc
Q 021247 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 190 (315)
Q Consensus 111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~ 190 (315)
+. .++.+|+.++.|..+|++..+.... ....|...|..+.|++++++||+|+.|+.+.|||....
T Consensus 269 ~~---~~lssGsr~~~I~~~dvR~~~~~~~------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 269 NS---SVLSSGSRDGKILNHDVRISQHVVS------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred cC---ceEEEecCCCcEEEEEEecchhhhh------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 83 3678999999999999987554332 12356677999999999999999999999999999888
Q ss_pred eeeeeecCCccceEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE--eCCCc
Q 021247 191 KFLHHLEGHFMPVRSLVYSPVDPRVLFSAS--DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG--SSDRT 266 (315)
Q Consensus 191 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~d~~ 266 (315)
.+...+..|...|.+++|+|..+.+|++|+ .|++|++||..++..+..+.. ...|..|.|++..+-|+++ -.++.
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 888999999999999999999999999886 599999999998887766553 4669999999987555443 44678
Q ss_pred EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 267 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
|.||+..+.+++..+.+|...|..+++||||..+++++.|.++++|++.
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 9999999999999999999999999999999999999999999999863
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=248.40 Aligned_cols=273 Identities=29% Similarity=0.407 Sum_probs=242.2
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
|...+.+..|.+ ..+++++.|.+|++|+..+...... +.||.++|.++++...+.++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLHD------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheeec------CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 566888888873 2599999999999999988887777 999999999999988789999999999999999999
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
+++...+.+|.+.+.++...+. ..++|+.|.+|++|++.+++.+..+. +|...|+++..+ +.
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-------------~h~~~V~~v~~~--~~ 342 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-------------GHTGPVNCVQLD--EP 342 (537)
T ss_pred CcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEec-------------cccccEEEEEec--CC
Confidence 9999999999999999887653 56788999999999999888877663 255669999987 78
Q ss_pred EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEE
Q 021247 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVD 250 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~ 250 (315)
++++|+.|+.|++||+++++++..+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++..+.+|..-+..+.
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~ 420 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL 420 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc
Confidence 9999999999999999999999999999999999987652 78999999999999999999 89999999998886665
Q ss_pred EcCCCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 251 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+ .++.|++++.|++|++||...++.++++.+ |...|+.+.+. ...+++++.|+++++||+.
T Consensus 421 ~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 421 L--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred c--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 4 467899999999999999999999999888 66888888876 3589999999999999973
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-33 Score=261.92 Aligned_cols=260 Identities=20% Similarity=0.326 Sum_probs=215.1
Q ss_pred CCcEEEEcCCCCcceee-----ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC----c----eeEEeeCCcccE
Q 021247 39 DETVKLWRPDDMQLERT-----NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN----A----SIATLEASPSEV 105 (315)
Q Consensus 39 d~~v~~w~~~~~~~~~~-----~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~----~----~~~~~~~~~~~v 105 (315)
+|-+++|+......... +..|...|.+++|+|+|.++++|+.|++|++|++... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888765544322 3458889999999999999999999999999997542 1 112222 34578
Q ss_pred EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEE
Q 021247 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISV 184 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i 184 (315)
.+++|+|.....+++++.|++|++||+.+++.+..+. .|...|.+++|+| ++.+|++|+.|+.|++
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i 602 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-------------EHEKRVWSIDYSSADPTLLASGSDDGSVKL 602 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence 8999998655567888999999999998877665542 3455699999997 7889999999999999
Q ss_pred EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247 185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSS 263 (315)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 263 (315)
||++++..+..+..+ ..+.++.|++.++.++++|+.|+.|++||++... .+..+.+|...|.++.|. ++.+|++++.
T Consensus 603 Wd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 603 WSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred EECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 999988888777654 5789999977788999999999999999998654 456678899999999997 6788999999
Q ss_pred CCcEEEEecCcc------ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 264 DRTVKLWDLNMR------AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 264 d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|++|++||+... ..+.++.+|...++.++|+|++.+|++++.|++|+||+.
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 999999999742 456778899999999999999999999999999999984
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.5e-33 Score=228.76 Aligned_cols=246 Identities=35% Similarity=0.545 Sum_probs=216.5
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 133 (315)
+.+.+|..+|.++.++|++.++++++.|+.+++|++.+++....+..+...+..+.|+|+++.+ ++++.++.+++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL-ASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEE-EEEcCCCeEEEEEcC
Confidence 3456899999999999999999999999999999999888777888888889999999998654 567789999999998
Q ss_pred CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247 134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP 213 (315)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 213 (315)
..+.+..+. .+...+.++.|+++++++++++.++.+++||+++++....+..|...+.++.|+|. +
T Consensus 82 ~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 147 (289)
T cd00200 82 TGECVRTLT-------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-G 147 (289)
T ss_pred cccceEEEe-------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc-C
Confidence 765554442 23345899999999888888888999999999988888888889999999999984 6
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEE
Q 021247 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF 293 (315)
Q Consensus 214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 293 (315)
.++++++.|+.+++||.+..+.+..+..|...+.++.|+|+++.+++++.|+.|++||++.++.+..+..|...+.++.|
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 78888888999999999988888888889889999999999999999999999999999988888888788889999999
Q ss_pred eeCCCEEEEEeCCCcEEEeec
Q 021247 294 RPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 294 s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+|++.++++++.|+.|++|++
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEc
Confidence 999888888888999999986
No 57
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.7e-34 Score=217.37 Aligned_cols=277 Identities=21% Similarity=0.285 Sum_probs=218.8
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-c-ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-Q-LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRV 86 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~-~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~ 86 (315)
|....++.|.+++|+|.. ..++++||+||+||+|+.+.. . ..+....|.++|.+++|+.+|..+++|+.|+.+++
T Consensus 22 v~~pP~DsIS~l~FSP~~---~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQA---DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred cCCCcccchheeEecccc---CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 455778999999999943 347889999999999998763 2 23455679999999999999999999999999999
Q ss_pred EECCCCceeEEeeCCcccEEEEEECCCCC-eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 87 FDVDTNASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 87 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
||+.+++. ..+..|..+|..+.|-+..+ .++++|++|.+|+.||+|..+++.++.+|+. +.++.
T Consensus 99 wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--------------vYa~D 163 (347)
T KOG0647|consen 99 WDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--------------VYAAD 163 (347)
T ss_pred EEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--------------eeehh
Confidence 99999954 56778999999999976544 3678999999999999999999888877643 33333
Q ss_pred ECCCCCEEEEecCCCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEEeec
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL--VTAMSG 241 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~ 241 (315)
. ....++++..++.|.+|+|+.+..... ...-+-.+++++..+ +....+.|+-+|.+-+..+..+.. --.+..
T Consensus 164 v--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 V--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred c--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 2 345788888999999999975543211 112234578888887 444568899999998887766422 222334
Q ss_pred cc---------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEE-EEeCC
Q 021247 242 HA---------SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVV-SVSDD 306 (315)
Q Consensus 242 ~~---------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d 306 (315)
|. -.|++++|+|....|+|+|.||++.+||-+.+..+++.+.|..+|+++.|+.+|.++| +.|.|
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 42 2477899999888999999999999999999999999999999999999999999886 55544
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=212.06 Aligned_cols=288 Identities=18% Similarity=0.257 Sum_probs=235.1
Q ss_pred ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC--
Q 021247 3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL-- 80 (315)
Q Consensus 3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-- 80 (315)
++....+.+.-...|+++.|++.+. .+++++.|.+++|||..+++..+.+..++-++..++|......++.++.
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~----~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGL----LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred ccccccccccCCCceeEEEecCCCC----EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence 3444455555677999999999886 6888899999999999999999988888889999998776666666665
Q ss_pred CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
|.+||..++.+++.++-+.+|...|..++.+|-+. .+++++.|.+|++||++..++...+.....
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-------------- 143 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-------------- 143 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCC--------------
Confidence 89999999999999999999999999999999986 557899999999999997776655543322
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL 235 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 235 (315)
..++|.|+|-.+|++.....|++||++.-. +...+. ..+.....+.|+| +++.++.+...+.+++.|.-.+.+
T Consensus 144 -pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 144 -PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred -cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcE
Confidence 268999999999999888899999997542 222222 3466789999998 778888888999999999998888
Q ss_pred EEEeecccccE---EEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 236 VTAMSGHASWV---LSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 236 ~~~~~~~~~~i---~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
+..+..+...- ....|+|+++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|.- ...++++..+-+
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~--~mf~sa~s~l~f 299 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY--AMFVSASSNLVF 299 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce--eeeeecCceEEE
Confidence 88777654332 5678999999999999999999999999998888877 68899999999974 444455566766
Q ss_pred ee
Q 021247 312 YE 313 (315)
Q Consensus 312 ~~ 313 (315)
|=
T Consensus 300 w~ 301 (311)
T KOG1446|consen 300 WL 301 (311)
T ss_pred Ee
Confidence 64
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.3e-34 Score=223.89 Aligned_cols=247 Identities=27% Similarity=0.418 Sum_probs=210.5
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc----ceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ----LERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~----~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
...+|++++..++|.-... ....|++||.|.++++|..+... ..+...||..+|.+++..++|.++++|+.|.+|
T Consensus 139 ~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 3569999999999986443 34479999999999999876543 234446999999999999999999999999999
Q ss_pred EEEECCC-------------------------CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee
Q 021247 85 RVFDVDT-------------------------NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA 139 (315)
Q Consensus 85 ~~w~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 139 (315)
++|+... ..++.++.+|..+|.++.|++. ..+++++.|-+|+.||+.++..+.
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee
Confidence 9999321 1244567889999999999983 356899999999999999988776
Q ss_pred eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce---eeeeecCCccceEEEEEcCCCCcEE
Q 021247 140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK---FLHHLEGHFMPVRSLVYSPVDPRVL 216 (315)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l 216 (315)
++..+. .+.++.++|..++|++|+.|..+++||.+++. ..+.+.+|+.-|.++.|+|.+..+|
T Consensus 296 ~~~~~k--------------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 296 TLTTNK--------------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred eeecCc--------------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence 654322 37899999999999999999999999998764 4577889999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 217 FSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 217 ~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
++++.|+++++||.+..+ .+..+.+|...|.++.|+. +..+++||.|.+|+|+.-.
T Consensus 362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999999999999876 8899999999999999984 5689999999999998643
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=225.34 Aligned_cols=283 Identities=22% Similarity=0.308 Sum_probs=245.3
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS 94 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~ 94 (315)
..+.++.-.|.. +.++||+.|..+.++|....++...++||...|+.+.++|+...+++++.|..||+|......+
T Consensus 220 pgi~ald~~~s~----~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSS----SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCC----CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 356666655553 3699999999999999999999999999999999999999999999999999999999998888
Q ss_pred eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247 95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA 174 (315)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 174 (315)
......|..+|..+..+|+|.|+ ++++.|++..+.|++++..+....-.. ..-.+++.+|+|||..|.
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYl-lsAs~d~~w~Fsd~~~g~~lt~vs~~~-----------s~v~~ts~~fHpDgLifg 363 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYL-LSASNDGTWAFSDISSGSQLTVVSDET-----------SDVEYTSAAFHPDGLIFG 363 (506)
T ss_pred ccccccccccceeeeeccCCcEE-EEecCCceEEEEEccCCcEEEEEeecc-----------ccceeEEeeEcCCceEEe
Confidence 88889999999999999999987 567899999999999988776553211 112378999999999999
Q ss_pred EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcC
Q 021247 175 CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASP 253 (315)
Q Consensus 175 ~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~ 253 (315)
+|+.|+.+++||+........+.+|..+|..++|+. ++.+|+++.+|+.|++||++..+....+.- ....+.++.|++
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence 999999999999998888899999999999999996 899999999999999999998766655543 234689999999
Q ss_pred CCCeEEEEeCCCcEEEEecC--ccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 254 DGAAITTGSSDRTVKLWDLN--MRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 254 ~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.|.+|+.++.|=+|++++-. .+..+.++..|.+..+.+.|.....+++++|.|..++|+.+
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999888666666532 45677788889999999999999999999999999999875
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-34 Score=230.20 Aligned_cols=276 Identities=25% Similarity=0.342 Sum_probs=231.9
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS 94 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~ 94 (315)
+.|..++|+|..+. . ++++|. -.+.||+..+....+.+.--...+.++.|-.||.++++|+..|.|+++|.++...
T Consensus 27 ~~vssl~fsp~~P~--d-~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPY--D-FAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred CcceeEecCCCCCC--c-eEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 68999999997764 2 444443 4789999888777776666778899999999999999999999999999666556
Q ss_pred eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEE
Q 021247 95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRI 173 (315)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 173 (315)
+..+..|..++..+.|+|+++.++++|++|+.+++||+.+...... ...|.++|++.+|+|. +..+
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~-------------l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE-------------LSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE-------------ecCCcceeEeeccccCCCeEE
Confidence 6788899999999999999999999999999999999988664222 2467889999999995 5588
Q ss_pred EEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEEEE
Q 021247 174 ACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDA 251 (315)
Q Consensus 174 ~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~ 251 (315)
++|+.||.|++||++.. ..+..+ .|..+|..+.+-| .+.++++++.. .+++||+. +++.+..+..|...|+|+.+
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRL 246 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEe
Confidence 99999999999999876 334444 4788999999998 45677777654 79999988 56666666679999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 252 SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 252 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
..+++-|++|+-|+.|++||+...+.++.+. -.++|.+++.+|++..++.|..+|.+.+
T Consensus 247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 9999999999999999999988888887774 4579999999999999999999998754
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=9.7e-34 Score=231.35 Aligned_cols=291 Identities=21% Similarity=0.257 Sum_probs=227.7
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc----ee-eccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL----ER-TNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~----~~-~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
+..|+..|.++++-|.+. .|+|||.|.+|++||++.+.. .+ ..+.....|+++++++.|.+|++.+.....
T Consensus 163 l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ccCCceEEEEeeecCCCc----eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 568899999999999876 599999999999999875442 12 234455689999999999999999989999
Q ss_pred EEEECCCCceeEEe------------eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC
Q 021247 85 RVFDVDTNASIATL------------EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152 (315)
Q Consensus 85 ~~w~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (315)
+|+|-...+..... ++|...+.+-+|+|..+..+++++.|+++++||+...+....+.-++..
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~----- 313 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA----- 313 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC-----
Confidence 99997655444333 4567788999999999988999999999999999865433222212221
Q ss_pred ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee--e-eeecCCcc--ceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--L-HHLEGHFM--PVRSLVYSPVDPRVLFSASDDTHVHM 227 (315)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~-~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~~ 227 (315)
.+.+-.+++|+|+++|++||+|..||.|.+||...... . ..-..|.. .|+++.|++ ++++|++-+.|.++++
T Consensus 314 --~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 314 --GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKV 390 (641)
T ss_pred --CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceee
Confidence 22344588999999999999999999999999743322 1 12235665 899999998 7889999999999999
Q ss_pred EeCCCCe-eEEEeecc--cccEEEEEEcCCCCeEEEEeC------CCcEEEEecCccceehcccccccceEEEEEeeCCC
Q 021247 228 YDAEGKS-LVTAMSGH--ASWVLSVDASPDGAAITTGSS------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG 298 (315)
Q Consensus 228 wd~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (315)
||++..+ .+....+- .-+-+.++|||+.+++++|.. .|.+.+||..+...+..+.-....|..+.|+|.-+
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 9998643 33322221 223457899999999999864 56799999988888877776678899999999999
Q ss_pred EEEEEeCCCcEEEe
Q 021247 299 RVVSVSDDKSISLY 312 (315)
Q Consensus 299 ~l~s~~~d~~i~i~ 312 (315)
.|+.++.||++++|
T Consensus 471 Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVY 484 (641)
T ss_pred heeeecCCCceEEE
Confidence 99999999999986
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=215.09 Aligned_cols=244 Identities=21% Similarity=0.349 Sum_probs=205.8
Q ss_pred eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247 55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 133 (315)
.+++|.+.|+.+.|+|+|..+++|+.|..|.+|++.. -+....+++|.++|..+.|.++++.+ ++++.|.+++.||.+
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i-~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI-LSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEE-EEecCCceEEEEecc
Confidence 4579999999999999999999999999999999654 34567888999999999999998865 678899999999999
Q ss_pred CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247 134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (315)
+++.+.+... |...++.+.-+.-|. ++.+++.|+++++||+++...++.+. ...+++++.|.. .
T Consensus 121 tG~~~rk~k~-------------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~ 185 (338)
T KOG0265|consen 121 TGKRIRKHKG-------------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-T 185 (338)
T ss_pred cceeeehhcc-------------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc-c
Confidence 9888766543 445577776333344 45678999999999999777666553 346789999985 6
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc----eehcccccc---
Q 021247 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA----AMQSMTNHT--- 285 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~--- 285 (315)
+...++|+-|+.|++||++.......+.+|.+.|+.+..+|+|.++.+-+.|.++++||++... .++.+.+|.
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 6788999999999999999999999999999999999999999999999999999999997543 345555543
Q ss_pred -cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 286 -DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 286 -~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.....++|||++.++-+++.|+.+++||.
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeec
Confidence 34667899999999999999999999984
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-33 Score=239.62 Aligned_cols=256 Identities=21% Similarity=0.310 Sum_probs=215.4
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
..|+++|-+|.|.|..+ +++||+.|..|++|++.+.++..++.||-+.|..+.||+.=..++|+|.|.+||+||..
T Consensus 48 deHdGpVRgv~FH~~qp----lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQP----LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred hccCCccceeeecCCCC----eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 47999999999999765 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC--C------CC-CCCC-------CCcc
Q 021247 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI--P------RP-EGLK-------PTDK 154 (315)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~------~~-~~~~-------~~~~ 154 (315)
+..++..+.+|..-|.+.+|+|... ++++++-|.+|++||+...+....-+. + .. ..+. ..-.
T Consensus 124 sr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 9999999999999999999999866 568999999999999875332221111 0 00 0000 0112
Q ss_pred CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
.+|...|+.++|+|.-..+++|+.|..|++|.+...+ .+.++++|...|.++.|+| ...+++|.+.|++|++||+..
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEeccc
Confidence 3567778999999999999999999999999986544 3567889999999999999 677999999999999999999
Q ss_pred CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
++.+..+.-..+..+.++.+|..+++++|. |+-+.+|.+.
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 999998887788889999999988777655 4445566654
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=234.91 Aligned_cols=248 Identities=19% Similarity=0.369 Sum_probs=214.1
Q ss_pred ceeeccccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247 52 LERTNTGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129 (315)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 129 (315)
+.....||+.+|.++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|..++|++.|..+ ++++-|+.+++
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f-LS~sfD~~lKl 284 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF-LSASFDRFLKL 284 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCee-eeeecceeeee
Confidence 3456789999999999999 899999999999999999987 78899999999999999999999876 57889999999
Q ss_pred EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208 (315)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 208 (315)
||+++++++..+..... +.++.|+|++ +.|++|+.|+.|+.||+++++.++....|-+.|..+.|
T Consensus 285 wDtETG~~~~~f~~~~~--------------~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKV--------------PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred eccccceEEEEEecCCC--------------ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 99999999988865433 6799999988 78999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc---eehccccc
Q 021247 209 SPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA---AMQSMTNH 284 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~ 284 (315)
.+ +++.+++.++|+.+++|+.+..-.++... .+.-...++..+|++.+++.-+.|+.|.+|.+...- +.+.+.+|
T Consensus 351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred cc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence 98 77899999999999999988765544332 223345678999999999999999999999875432 23456777
Q ss_pred ccc--eEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 285 TDQ--VWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 285 ~~~--v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..+ -..|.|||||.+|++|..||.+.+|||.
T Consensus 430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred eccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence 643 4578999999999999999999999983
No 66
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.9e-32 Score=234.30 Aligned_cols=247 Identities=15% Similarity=0.235 Sum_probs=192.4
Q ss_pred EeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCc--------eeEEeeCCcccE
Q 021247 35 TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNA--------SIATLEASPSEV 105 (315)
Q Consensus 35 sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~--------~~~~~~~~~~~v 105 (315)
.|+.++.|++|+.........+.+|..+|.+++|+|+ +.+|++|+.|++|++||+.++. .+..+..|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 4667889999988766667778899999999999997 7899999999999999997642 234567888999
Q ss_pred EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~ 185 (315)
.+++|+|++..++++++.|++|++||+++++.+..+.. ...|.+++|+|+|.+|++++.|+.|++|
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--------------~~~V~SlswspdG~lLat~s~D~~IrIw 194 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--------------PKKLSSLKWNIKGNLLSGTCVGKHMHII 194 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--------------CCcEEEEEECCCCCEEEEEecCCEEEEE
Confidence 99999999988888889999999999998776554421 2348999999999999999999999999
Q ss_pred EcccceeeeeecCCccceEEE-----EEcCCCCcEEEEEeCC----CeEEEEeCCC-CeeEEEe--ecccccEEEEEEcC
Q 021247 186 DVTRAKFLHHLEGHFMPVRSL-----VYSPVDPRVLFSASDD----THVHMYDAEG-KSLVTAM--SGHASWVLSVDASP 253 (315)
Q Consensus 186 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~l~s~~~d----~~i~~wd~~~-~~~~~~~--~~~~~~i~~~~~~~ 253 (315)
|+++++.+..+.+|...+... .|++ ++.++++++.| +.|++||++. ...+... ..+.+.+......+
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 999999988898998765332 3445 55677777765 4799999985 4444433 23334343344455
Q ss_pred CCCeEEEEeCCCcEEEEecCccce--ehcccccccceEEEEEeeCC
Q 021247 254 DGAAITTGSSDRTVKLWDLNMRAA--MQSMTNHTDQVWGVSFRPLG 297 (315)
Q Consensus 254 ~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~ 297 (315)
++.++++|+.|+.|++|++..+.. +..+. +..+..+++|.|..
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 688999999999999999976542 22222 45678899999963
No 67
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=202.46 Aligned_cols=241 Identities=27% Similarity=0.452 Sum_probs=201.1
Q ss_pred eeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCc---eeEEe-eCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247 53 ERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNA---SIATL-EASPSEVWQMQFDPKGTTLAVAGGGSASV 127 (315)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 127 (315)
.+.+.+|.+.+..++++|- |.+|++++.|+.||+|+...+. +...+ +.|...|..++|+|.|++ +++++.|.++
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~-La~aSFD~t~ 85 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY-LASASFDATV 85 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE-EEEeeccceE
Confidence 4567889999999999998 8999999999999999998533 33333 467889999999999995 5788999999
Q ss_pred EEEecCCcc--eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc---eeeeeecCCccc
Q 021247 128 KLWDTATWN--LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA---KFLHHLEGHFMP 202 (315)
Q Consensus 128 ~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~---~~~~~~~~~~~~ 202 (315)
.||.-..++ ++.++. +|...|.+++|+++|++||+++.|..|.+|.+... .+...+..|...
T Consensus 86 ~Iw~k~~~efecv~~lE-------------GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLE-------------GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEeecCCCceeEEeeee-------------ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 999866443 333332 34556999999999999999999999999998643 346678899999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh
Q 021247 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAE---GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279 (315)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 279 (315)
|..+.|+|. ..+|++++-|.+|++|+-. .-.+++.+.+|...+++++|+|.|..|++++.|++|+||.+.+. +
T Consensus 153 VK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~- 228 (312)
T KOG0645|consen 153 VKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--L- 228 (312)
T ss_pred ccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--c-
Confidence 999999995 5699999999999999865 33678899999999999999999999999999999999986522 1
Q ss_pred cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 280 SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 280 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
-..|+.++..+.|. ...|++++.|+.|+||.-
T Consensus 229 -~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 229 -SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred -chhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 12477899999998 457999999999999964
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=236.96 Aligned_cols=239 Identities=20% Similarity=0.369 Sum_probs=196.0
Q ss_pred ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC--------------------------------C-------------
Q 021247 58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT--------------------------------N------------- 92 (315)
Q Consensus 58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~--------------------------------~------------- 92 (315)
.|.++|.++.|++||++||+||.|+.||||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999998865 0
Q ss_pred ---------------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247 93 ---------------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 93 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
+++..+.+|.+.|..+.|+.+ +++++++.|.+|+||++...++++.+ .|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F--------------~H 408 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF--------------SH 408 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE--------------ec
Confidence 011223457778999999865 46778999999999999988888766 47
Q ss_pred CcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247 158 KKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 158 ~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
.++|+|++|+| |.++|++|+.||.++||++...+...-.. -..-|++++|.| +++..+.|+-+|.+++|+..+.++.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEE
Confidence 88899999999 78899999999999999998766543333 336899999999 5889999999999999999887665
Q ss_pred EEee--cc------cccEEEEEEcCCCC-eEEEEeCCCcEEEEecCccceehccccccc--ceEEEEEeeCCCEEEEEeC
Q 021247 237 TAMS--GH------ASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRAAMQSMTNHTD--QVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 237 ~~~~--~~------~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~ 305 (315)
.... .| ...|+++.|.|... .|++.+.|..|||+|++...++..+.++.. .=....|+.||++|+++++
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 4332 11 23799999998543 467778999999999988888777765432 2346889999999999999
Q ss_pred CCcEEEeec
Q 021247 306 DKSISLYEY 314 (315)
Q Consensus 306 d~~i~i~~~ 314 (315)
|..|+||++
T Consensus 567 Ds~VYiW~~ 575 (712)
T KOG0283|consen 567 DSWVYIWKN 575 (712)
T ss_pred CceEEEEeC
Confidence 999999996
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.6e-31 Score=231.52 Aligned_cols=267 Identities=14% Similarity=0.212 Sum_probs=201.2
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----------cce---eeccccccceEEEEeCC-CCCEEEE
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----------QLE---RTNTGHCLGVVSVAAHP-SGIIAAS 77 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----------~~~---~~~~~h~~~v~~~~~~~-~g~~l~s 77 (315)
.|-..|.....+++.. .+++++.+.....|+.... +.. ..+.+|.++|.+++|+| ++.+|++
T Consensus 18 ~~~~~i~~~~~~~d~~----~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 18 RHFLNVTPSTALWDCS----NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred cceeccccccccCCCC----CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 3445666565555432 3677777777777764322 111 13568999999999999 7899999
Q ss_pred eeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247 78 ASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150 (315)
Q Consensus 78 ~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (315)
++.|++|++||+.++ ..+..+..|...|.+++|+|.+..++++++.|++|++||+++++.+..+.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-------- 165 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-------- 165 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--------
Confidence 999999999999765 24567888999999999999876677889999999999999877665542
Q ss_pred CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccc-eEEEEEcCCCCcEEEEEe----CCCeE
Q 021247 151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMP-VRSLVYSPVDPRVLFSAS----DDTHV 225 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~----~d~~i 225 (315)
.|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|... +..+.|.+.+. .+++++ .|+.|
T Consensus 166 -----~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 166 -----CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQI 239 (493)
T ss_pred -----CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeE
Confidence 24456999999999999999999999999999999988888888754 34667887544 455443 47999
Q ss_pred EEEeCCCCe-eEEEeec-ccccEEEEEEcCCCCeEEEEe-CCCcEEEEecCccceehcccc-cccceEEEEEeeC
Q 021247 226 HMYDAEGKS-LVTAMSG-HASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPL 296 (315)
Q Consensus 226 ~~wd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~ 296 (315)
++||++... .+..... +...+....|++++.+|++++ .|+.|++||+..++....... +.++..+++|.|.
T Consensus 240 klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999998643 3333322 334566677899999998887 499999999998876654433 3456778888875
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.8e-32 Score=212.25 Aligned_cols=256 Identities=22% Similarity=0.299 Sum_probs=213.9
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
+.+|.+.|+++.|+.++. +||||..+|.|++|...++.....+.+....+.-+.|||.+.+|++|+.||.+.+|.+
T Consensus 102 ltgHKDSVt~~~Fshdgt----lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGT----LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ecCCCCceEEEEEccCce----EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 469999999999998875 8999999999999999998888877767778999999999999999999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC--------------------
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-------------------- 149 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-------------------- 149 (315)
.++...+.+.+|..++.+=.|.|+|+.+ +++..|++|++||..++.++..+........
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~-~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRI-LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceE-EEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 9987788889999999999999999876 5788899999999999988877762211000
Q ss_pred ------------------CCCccCCCCcceEE---EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247 150 ------------------KPTDKSSSKKFVLS---VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208 (315)
Q Consensus 150 ------------------~~~~~~~~~~~i~~---~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 208 (315)
.+..+..+...+.+ +.++..-.+.|+|+.||+|.|||+...++...+ .|..+|..+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEE
Confidence 00001111222223 344445567899999999999999876655544 47788999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 209 SPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
-+ ..+|++++.+|.|+.||.++++++..+.+|...|.+++++|+.++++|++.|++.+||+..
T Consensus 336 ~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 336 LN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 87 5689999999999999999999999999999999999999999999999999999999864
No 71
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-31 Score=205.52 Aligned_cols=272 Identities=19% Similarity=0.281 Sum_probs=213.2
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
+.....+.|..|.|+|... .|+.+|+||++++|+.....+... -.|..++++++|.+ ...+++|+.||.|+.+|
T Consensus 8 l~npP~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred cCCCChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEE
Confidence 3456688999999997655 488888999999999887754333 35889999999988 45778899999999999
Q ss_pred CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
++++... .+..|..++.++.+.+..+. +++|++|++|++||.+.......+.. ...|.++..
T Consensus 82 ln~~~~~-~igth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~--------------~kkVy~~~v-- 143 (323)
T KOG1036|consen 82 LNTGNED-QIGTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQ--------------GKKVYCMDV-- 143 (323)
T ss_pred ecCCcce-eeccCCCceEEEEeeccCCe-EEEcccCccEEEEecccccccccccc--------------CceEEEEec--
Confidence 9987653 45668899999999976664 57899999999999986332222211 113666655
Q ss_pred CCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEEeecc
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK----SLVTAMSGH 242 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~ 242 (315)
.++.|++|+.+..+.+||+++.......+ .-+..++++++.| +..-++.++-||.+.+=..... +....+..|
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 47899999999999999999876544322 2356789999999 6667888899999887544433 223334444
Q ss_pred c---------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247 243 A---------SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 243 ~---------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
. -+|++++|+|-...|+||+.||.|.+||+..++.+.++......|-+++|+.+|..||.++.
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 2 36899999999889999999999999999999999998887788999999999999998765
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=212.19 Aligned_cols=288 Identities=19% Similarity=0.307 Sum_probs=229.9
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC------------------CcceeeccccccceEEEEeCCC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD------------------MQLERTNTGHCLGVVSVAAHPS 71 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~------------------~~~~~~~~~h~~~v~~~~~~~~ 71 (315)
+..|..++-+-+|+|++. +++|||.|-+|+|.|.+. ..+++.+..|.++|+.+.|+|.
T Consensus 108 lt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 467899999999999885 899999999999998641 1235667789999999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeEEe--eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 72 GIIAASASLDSFVRVFDVDTNASIATL--EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 72 g~~l~s~~~d~~i~~w~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
..+|++++.|++|+++|+......+.+ .....+|.++.|+|.|.+++ .|.+-.++++||+.+.++....+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~Qcfvsan------- 255 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSAN------- 255 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecC-------
Confidence 999999999999999999765433222 22346799999999999764 57788899999999877665443
Q ss_pred CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CC-ccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247 150 KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GH-FMPVRSLVYSPVDPRVLFSASDDTHVHM 227 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 227 (315)
...+|...|+++.+++.++..++++.||.|++||--.++++..+. .| ...|.+..|.. +++++++++.|..+++
T Consensus 256 ---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 256 ---PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKL 331 (430)
T ss_pred ---cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeee
Confidence 124577789999999999999999999999999988888887764 34 34688888886 8899999999999999
Q ss_pred EeCCCCeeEEEeecc-----cccEEEEEEcCCCCeEEEEe-CCCcEEEEecCccceehc-ccccccceEEEEEeeCCCEE
Q 021247 228 YDAEGKSLVTAMSGH-----ASWVLSVDASPDGAAITTGS-SDRTVKLWDLNMRAAMQS-MTNHTDQVWGVSFRPLGGRV 300 (315)
Q Consensus 228 wd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l 300 (315)
|++.++..+..+.+- ..--+...|+....+++.-. ..+.+.-||.++...+.. -.+|++.+..+..||.+.-+
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 999988887776542 11112334666666655433 245688899988655433 34899999999999999999
Q ss_pred EEEeCCCcEEEee
Q 021247 301 VSVSDDKSISLYE 313 (315)
Q Consensus 301 ~s~~~d~~i~i~~ 313 (315)
+++++|..+|.|-
T Consensus 412 mTcsdD~raRFWy 424 (430)
T KOG0640|consen 412 MTCSDDFRARFWY 424 (430)
T ss_pred eeecccceeeeee
Confidence 9999999999995
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=236.67 Aligned_cols=244 Identities=22% Similarity=0.422 Sum_probs=201.6
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----------------------------C---c-------
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----------------------------M---Q------- 51 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----------------------------~---~------- 51 (315)
..+|.+.||++.|+++++ |||+||.|+.|+||.... . +
T Consensus 263 ~~ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 263 SNAHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred ccccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 459999999999999997 799999999999996432 0 0
Q ss_pred ----------------------ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247 52 ----------------------LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109 (315)
Q Consensus 52 ----------------------~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~ 109 (315)
....+.||.+.|+.|+|+.++ +|++++-|+++|||++....|+.++. |.+-|++++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 012236899999999999865 77899999999999999999988876 789999999
Q ss_pred ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc
Q 021247 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR 189 (315)
Q Consensus 110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~ 189 (315)
|+|.+..++++|+-|+.|+||++...+.+.-.. .+..|++++|.|+|+..++|+.+|.+++|+.+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh--------------hhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 999887788999999999999997655443222 234699999999999999999999999999988
Q ss_pred ceeeeeec--CC------ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc--EEEEEEcCCCCeEE
Q 021247 190 AKFLHHLE--GH------FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW--VLSVDASPDGAAIT 259 (315)
Q Consensus 190 ~~~~~~~~--~~------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~ 259 (315)
.+...... .| ...|+.+.|.|.++..++..+.|..|+|||.+...++..+.++... =....|+.+|++++
T Consensus 483 lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 483 LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 77654432 11 2279999999988888888999999999999888887777654322 23567888999999
Q ss_pred EEeCCCcEEEEecC
Q 021247 260 TGSSDRTVKLWDLN 273 (315)
Q Consensus 260 s~~~d~~i~iwd~~ 273 (315)
+++.|..|++|+..
T Consensus 563 s~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 563 SASEDSWVYIWKND 576 (712)
T ss_pred EeecCceEEEEeCC
Confidence 99999999999973
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-33 Score=220.83 Aligned_cols=247 Identities=22% Similarity=0.341 Sum_probs=204.5
Q ss_pred hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247 7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVR 85 (315)
Q Consensus 7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~ 85 (315)
...+.+|..+|.-+.|+|+++ +|++++.|..+++||.+++.+....+ +|...+.+++|.|||..+++|+.|++|.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCC----eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 445679999999999999987 69999999999999999988766543 4568899999999999999999999999
Q ss_pred EEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247 86 VFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (315)
.||++.+.. ...++ ....|++++..++|+++++.+ .|..|++|+..+......+ .....|+++
T Consensus 338 ~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~li--------------se~~~its~ 401 (519)
T KOG0293|consen 338 MWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLI--------------SEEQPITSF 401 (519)
T ss_pred EecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccc--------------cccCceeEE
Confidence 999976542 22222 235689999999999886654 7899999998653332222 223459999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceE--EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR--SLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH 242 (315)
Q Consensus 165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 242 (315)
+.+.+++++++.-.+..+++||++..+.+..+.||...-. .-+|...+..++++|+.|++|+||+..+++++..+.||
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence 9999999999999999999999998888888888865422 22455446679999999999999999999999999999
Q ss_pred cccEEEEEEcCC-CCeEEEEeCCCcEEEEecC
Q 021247 243 ASWVLSVDASPD-GAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 243 ~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~ 273 (315)
...+++++|+|. ..++|+|+.||+||||...
T Consensus 482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999995 5689999999999999765
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-32 Score=226.68 Aligned_cols=283 Identities=22% Similarity=0.356 Sum_probs=235.8
Q ss_pred CcccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee--eccccccceEE-EEeCC-CCCEEE
Q 021247 1 MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER--TNTGHCLGVVS-VAAHP-SGIIAA 76 (315)
Q Consensus 1 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~--~~~~h~~~v~~-~~~~~-~g~~l~ 76 (315)
|..-++...+.+|..+|-.|+..+.. .++++|.||++++|+....+... .+.+|.+-+.. +++-+ ++-.++
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred CCcceeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE
Confidence 44556778899999999999977644 59999999999999875544333 35566666655 66654 555789
Q ss_pred EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247 77 SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156 (315)
Q Consensus 77 s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
+|+.|.+|.+|.+....++.++++|...|.+++...++. +++|++|.++++|-.... ... ..+
T Consensus 76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l--~~~-------------l~g 138 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL--VYS-------------LQG 138 (745)
T ss_pred eecccceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh--hcc-------------cCC
Confidence 999999999999999999999999999999998776655 689999999999976532 111 235
Q ss_pred CCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 157 ~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
|...|..++.-|++ .+++|+.|..|++|.- ++.+..+.+|+..|+.+++-| ...++|++.||.|++|++ .+..+
T Consensus 139 H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 139 HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred cchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEec-cCcee
Confidence 66778888888877 8899999999999984 778889999999999999986 346899999999999999 56688
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..+.+|...+.+++..++++.+++++.|++++||+.. ++.+.+......+|++.+-++| .|++||.||.||||..
T Consensus 213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTV 287 (745)
T ss_pred eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEe
Confidence 8899999999999988888899999999999999886 6667776666799999999887 4999999999999974
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.8e-32 Score=202.78 Aligned_cols=243 Identities=25% Similarity=0.392 Sum_probs=208.6
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d 131 (315)
+...+|...+.+++|+.+|..+++++.|+++++|+++...... ....|.+.|..++|+|..+.++++.+.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998875432 45678888999999999888889999999999999
Q ss_pred cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211 (315)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 211 (315)
.+++++...+..... -.-+.|+|+|++++++..|..|.+.|.++.+.....+ ....+..+.|+.
T Consensus 94 ~r~~k~~~~i~~~~e--------------ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 94 IRSGKCTARIETKGE--------------NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN- 157 (313)
T ss_pred eccCcEEEEeeccCc--------------ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-
Confidence 999998877643221 2368999999999999999999999998877665433 344677888885
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEE
Q 021247 212 DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV 291 (315)
Q Consensus 212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 291 (315)
...+++.-...|+|.|-....-+.+..+..|...+.++.|+|+|+++|+|+.|..+.+||++.--+++.+..+.-+|..+
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL 237 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence 44566666667899988877888888999999999999999999999999999999999999888888888898999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEe
Q 021247 292 SFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 292 ~~s~~~~~l~s~~~d~~i~i~ 312 (315)
.||.+|++||++|+|..|-|=
T Consensus 238 SFS~dg~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIA 258 (313)
T ss_pred EeccCcceeeccCccceEEeE
Confidence 999999999999999988663
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=230.90 Aligned_cols=256 Identities=29% Similarity=0.471 Sum_probs=220.3
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
+.+|.+.|+++++..-+ .++++||.|.++++||..++++...+.+|...+.++...+ .++++|+.|.+|++|++
T Consensus 245 l~GH~g~V~~l~~~~~~----~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGG----DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDV 318 (537)
T ss_pred ccCCCCCceeEEEecCC----CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEec
Confidence 67999999999997523 3799999999999999999999999999999999988744 57888999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 169 (315)
+++.++.++.+|..+|.++..+ +. ++++|+.|++|++||.++++++.++. +|..+|.++.+.+.
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl~-------------gH~~~V~sl~~~~~ 382 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSLS-------------GHTGRVYSLIVDSE 382 (537)
T ss_pred cCcceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhceeeeeec-------------CCcceEEEEEecCc
Confidence 9999999999899999999998 33 66889999999999999998887774 46677999988766
Q ss_pred CCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-ccccEE
Q 021247 170 GRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-HASWVL 247 (315)
Q Consensus 170 ~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~ 247 (315)
..+++|+.|+.|++||+++. +++..+.+|..-+..+.+ .+++|++++.|++|++||...++++..+.+ |...|.
T Consensus 383 -~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~ 458 (537)
T KOG0274|consen 383 -NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVS 458 (537)
T ss_pred -ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCcccEE
Confidence 89999999999999999999 899999999988876665 357899999999999999999999999988 678888
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-ccccceEEEEE
Q 021247 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSF 293 (315)
Q Consensus 248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~ 293 (315)
.+.+. ...+++++.|+++++||++++.....+. ......+.+++
T Consensus 459 ~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 459 ALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EeecC--cceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 88876 4578999999999999999988776652 22334444444
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-32 Score=226.55 Aligned_cols=277 Identities=23% Similarity=0.306 Sum_probs=224.1
Q ss_pred cEEEEeeCCCcEEEEcCCCCcc------eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEeeCCc
Q 021247 31 ALLLTGSLDETVKLWRPDDMQL------ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATLEASP 102 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~------~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~ 102 (315)
.+|+|||.||.|++|+.....- ...+..|.+-|+.+....+|+.++|++.|-+|++|+...+ .+..++..|.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 3899999999999998653221 2334568899999999999999999999999999999887 5778889999
Q ss_pred ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc--eeeeecCCCCCCCCCCcc-CCCCcceEEEEECCCCCEEEEecCC
Q 021247 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN--LIATLSIPRPEGLKPTDK-SSSKKFVLSVAWSPDGRRIACGSMD 179 (315)
Q Consensus 103 ~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~s~d 179 (315)
+.|.++++-...+.++++|+-|+.|.+||+.++. ++.+++. ...... .+++..|.+++-++.|..|++|+..
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----cccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 9999999966667788999999999999998763 3332221 111111 2667789999999999999999999
Q ss_pred CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT 259 (315)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (315)
+.+++||.++++.+..+++|+..|+.+..++ ++..+++++.||+|++||+..+.++..+..|...++++..+|+-..+.
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999997 788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 260 TGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 260 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+|+.||.|..=|++.......+-....+|..+..+...+-+=.+..|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999987432222223334555555554333344555666666664
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.6e-30 Score=229.56 Aligned_cols=286 Identities=23% Similarity=0.379 Sum_probs=231.9
Q ss_pred hccccceEEEEEeecCCCCCcEEEEee--CCCcEEEEcCCC------------CcceeeccccccceEEEEeCCCCCEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGS--LDETVKLWRPDD------------MQLERTNTGHCLGVVSVAAHPSGIIAA 76 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs--~d~~v~~w~~~~------------~~~~~~~~~h~~~v~~~~~~~~g~~l~ 76 (315)
.-++..|+.+.-+|++. .++||+ .|+.+++|+.+. .++.-+...|...|+|+.|+|+|.+||
T Consensus 10 ~H~~~~IfSIdv~pdg~----~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGV----KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccCCeeEEEEEecCCce----eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 34456789999999886 599999 999999997531 112233457999999999999999999
Q ss_pred EeeCCCeEEEEECCC-------C-----------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247 77 SASLDSFVRVFDVDT-------N-----------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI 138 (315)
Q Consensus 77 s~~~d~~i~~w~~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 138 (315)
+|+.|+.|.+|.... + +++..+..|+..|..++|+|++. ++++++-|++|.+|+.++.+.+
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceee
Confidence 999999999999873 1 25567788999999999999877 5578999999999999998777
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCcc------ceEEEEEcCCC
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM------PVRSLVYSPVD 212 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~ 212 (315)
..+. .|...|.++.|.|-|++||+-+.|++|++|++..-.....+..+.. -++-+.|+| +
T Consensus 165 ~vl~-------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-D 230 (942)
T KOG0973|consen 165 KVLR-------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-D 230 (942)
T ss_pred eeee-------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-C
Confidence 6664 4556689999999999999999999999999766555555444322 357789999 6
Q ss_pred CcEEEEEeC----CCeEEEEeCCCCeeEEEeecccccEEEEEEcCC-----CC------------eEEEEeCCCcEEEEe
Q 021247 213 PRVLFSASD----DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD-----GA------------AITTGSSDRTVKLWD 271 (315)
Q Consensus 213 ~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~s~~~d~~i~iwd 271 (315)
+++|++.-. -..+.|.+-.+.+.-..+.+|.+++..+.|+|. .. .+|+|+.|++|.||.
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 778877643 346888888777777888999999999999982 12 689999999999999
Q ss_pred cCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 272 LNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 272 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
....+++..... -...|..++|+|||..|+.+|.||+|.++.|+
T Consensus 311 T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 311 TALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 987777654322 34689999999999999999999999999874
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-30 Score=218.20 Aligned_cols=279 Identities=24% Similarity=0.356 Sum_probs=233.9
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc---------eeeccccccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL---------ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVR 85 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~---------~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~ 85 (315)
..+-.+.|.|..... ..|+. -.++++..|.++...- ...+.||...|.+++++.+...++||+. +.++
T Consensus 321 ~kiks~dv~~~~~~~-~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~Sik 397 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTE-NTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIK 397 (888)
T ss_pred hheeEEEEEecCCcc-eeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEE
Confidence 378889999987654 33444 6678888887654111 1345799999999999999988888764 5699
Q ss_pred EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
+|+..+.++++++... .+.+..|-|.++++ +.|...|.+.+||+.+...+.++. .|...|.+++
T Consensus 398 iWn~~t~kciRTi~~~--y~l~~~Fvpgd~~I-v~G~k~Gel~vfdlaS~~l~Eti~-------------AHdgaIWsi~ 461 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCG--YILASKFVPGDRYI-VLGTKNGELQVFDLASASLVETIR-------------AHDGAIWSIS 461 (888)
T ss_pred EEEccCcceeEEeccc--cEEEEEecCCCceE-EEeccCCceEEEEeehhhhhhhhh-------------ccccceeeee
Confidence 9999999999998764 78888999988876 578899999999998876665442 4566799999
Q ss_pred ECCCCCEEEEecCCCcEEEEEccc-----ceeeeeec-------CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTR-----AKFLHHLE-------GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK 233 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~-----~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 233 (315)
.+||+..+++|+.|.+|++||..- +.....+. .-...|.++.++| ++++|+.+-.|.++++|-+.+.
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecce
Confidence 999999999999999999999631 11111111 1245789999999 7889999999999999999998
Q ss_pred eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+....+-||.-+|.+++++|++.+++||+.|.+|++|-++-|.+.+.+-+|.+.|.+|.|-|..+.++++|-|+.|+-||
T Consensus 541 KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999997
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-31 Score=203.97 Aligned_cols=289 Identities=22% Similarity=0.296 Sum_probs=234.8
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~ 83 (315)
+++...+.||.+.||.|+--.. .+++.++|.|.+.+||..+.+.++..+.||.+.|+++.|++++.++++++.|++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADST----QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred EeehhhhcccccceeeehhhcC----CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 3445567899999999986432 238999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEC------CCC----------------------------------ceeEEeeCCcccEEEEEECCCCCeEEEEecC
Q 021247 84 VRVFDV------DTN----------------------------------ASIATLEASPSEVWQMQFDPKGTTLAVAGGG 123 (315)
Q Consensus 84 i~~w~~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 123 (315)
.++|.. ..+ .++..+.+|...|.+..|-..+..+ +++++
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~-vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM-VTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee-eeeec
Confidence 999972 110 0233455677778888888777754 78999
Q ss_pred CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecCCccc
Q 021247 124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMP 202 (315)
Q Consensus 124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~ 202 (315)
|.+..+||.++++.+..+.. |....+.++-+|..+++++.+.|.++++||.+..- .+..+.+|...
T Consensus 293 DRTAnlwDVEtge~v~~LtG-------------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTG-------------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred cccceeeeeccCceeccccC-------------cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 99999999999888876643 44446778889999999999999999999997442 35678899999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh--
Q 021247 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-- 279 (315)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-- 279 (315)
|+++.|.. +..+++|++|.+|++||+++. ..+..+. -..+++.++++..+.+++.-..++.|++||++-.+ +.
T Consensus 360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRl 435 (481)
T KOG0300|consen 360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARL 435 (481)
T ss_pred eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccC
Confidence 99999985 447999999999999999864 4455554 35678899999888899999999999999998433 22
Q ss_pred ---cccccccceEEEEEeeC--CCEEEEEeCCCcEEEeec
Q 021247 280 ---SMTNHTDQVWGVSFRPL--GGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 280 ---~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~i~~~ 314 (315)
.-.+|..-|.+++|... -.-|+++|-|+.+.=|++
T Consensus 436 PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 436 PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred CcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 23578888999999854 246899999999988875
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-29 Score=184.44 Aligned_cols=282 Identities=22% Similarity=0.331 Sum_probs=221.3
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---------------cceeeccccccceEEEEeCCCCCEEEEe
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---------------QLERTNTGHCLGVVSVAAHPSGIIAASA 78 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---------------~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 78 (315)
+..|-+|+|.|.+. +-+.||...+.++-.+... .+.+..+.|.+.|.|.+|+|+|.++++|
T Consensus 32 sqairav~fhp~g~----lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGG----LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hhheeeEEecCCCc----eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 55788999999875 6888998899888753210 0123345688999999999999999999
Q ss_pred eCCCeEEEEECCCCcee-----EEeeCCcccEEEEEECCC---CCeEEEE-ecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 79 SLDSFVRVFDVDTNASI-----ATLEASPSEVWQMQFDPK---GTTLAVA-GGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 79 ~~d~~i~~w~~~~~~~~-----~~~~~~~~~v~~~~~~~~---~~~~~~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
++|++|++...+...+. ..+..|.+.|..++|-.+ +..++++ |.+|..|.+-|..+++...-
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--------- 178 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--------- 178 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee---------
Confidence 99999999887765432 356678889999998532 3334443 44566666666655544333
Q ss_pred CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-------CccceEEEEEcCCCCcEEEEEeCC
Q 021247 150 KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
.++|...|..+ ++.+|-.+++|+.|.+|++||++-+..+..+.. ....|.+++..| .+++|++|-.|
T Consensus 179 ----~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~d 252 (350)
T KOG0641|consen 179 ----LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHAD 252 (350)
T ss_pred ----ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCC
Confidence 24556667654 345678999999999999999988777666532 235788999998 67899999999
Q ss_pred CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-----ehcccccccceEEEEEeeCC
Q 021247 223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-----MQSMTNHTDQVWGVSFRPLG 297 (315)
Q Consensus 223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~ 297 (315)
....+||++++..++.+-.|...|.++.|+|.-.++++++.|.+|++-|+.- .. .-....|.+.+..+.|+|..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCcc
Confidence 9999999999999999999999999999999999999999999999999863 32 22345688899999999998
Q ss_pred CEEEEEeCCCcEEEeecC
Q 021247 298 GRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 298 ~~l~s~~~d~~i~i~~~~ 315 (315)
--+++.+.|+++.+|.+.
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 889999999999999864
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.2e-30 Score=197.80 Aligned_cols=240 Identities=21% Similarity=0.377 Sum_probs=202.1
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCC--EEEEeeCCCeEEEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI--IAASASLDSFVRVFD 88 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~~~d~~i~~w~ 88 (315)
.+|..++++|+-+- .+++|||.|.+|+|||+........+-.|.+.|+++.|.+.-. .|++|+.||.|-+|+
T Consensus 40 ~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 40 SAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccceeEEEecc------eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 58999999999753 3799999999999999988877777778999999999998764 889999999999999
Q ss_pred CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
...-.++.+++.|...|+.++.||+++ ++++-++|+.+++||+-+++.-..+++... -+.+.|+|
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--------------at~v~w~~ 178 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNK--------------ATLVSWSP 178 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCc--------------ceeeEEcC
Confidence 999999999999999999999999987 667788999999999988776555544322 23589999
Q ss_pred CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEE
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLS 248 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~ 248 (315)
.|.+|+.+..+ .|-+|.+........+... ..+.++.|. ++..|++|++|+.|.+||.........+.+|...|-+
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD 254 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence 99999888665 6889988776655444322 235566665 5779999999999999999988888899999999988
Q ss_pred EE--EcCCCCeEEEEeCCCcEEEEecCcc
Q 021247 249 VD--ASPDGAAITTGSSDRTVKLWDLNMR 275 (315)
Q Consensus 249 ~~--~~~~~~~l~s~~~d~~i~iwd~~~~ 275 (315)
+. -+|++.+|+|++.||.|++||++..
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 87 3667889999999999999999865
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4e-30 Score=207.48 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=225.4
Q ss_pred hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce-----------------eec-cccccceEEEEe
Q 021247 7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE-----------------RTN-TGHCLGVVSVAA 68 (315)
Q Consensus 7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~-----------------~~~-~~h~~~v~~~~~ 68 (315)
..+...|.-+|.+|+.+|... +.++++.|++|.=|+..+++.. +.. .+|...+.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~----~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK----RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeecccc----ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 345678999999999999775 6999999999999986554311 111 378889999999
Q ss_pred CCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247 69 HPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148 (315)
Q Consensus 69 ~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 148 (315)
++||++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-...+.+ ++++.|+.+++|++.....+.++
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetl------- 282 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETL------- 282 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHH-------
Confidence 9999999999999999999999999999999999999999998655544 67889999999999876555444
Q ss_pred CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228 (315)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 228 (315)
.+|++.|..+.-..-++.+-+|+.|+++++|++. ......+.++...+.+++|- +...+++|+++|.|.+|
T Consensus 283 ------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 283 ------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALW 353 (479)
T ss_pred ------hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEe
Confidence 3566668888777777888888899999999993 34445667888899999996 45689999999999999
Q ss_pred eCCCCeeEEEee------------cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----ceehcccccccceEEEE
Q 021247 229 DAEGKSLVTAMS------------GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR----AAMQSMTNHTDQVWGVS 292 (315)
Q Consensus 229 d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~ 292 (315)
++...+++.... .++.||++++..|...++++|+.+|.|++|.+..+ .++..++ -.+.|++++
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~ 432 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA 432 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence 988776554322 12349999999999999999999999999998765 2344443 457899999
Q ss_pred EeeCCCEEE-EEeCCCc
Q 021247 293 FRPLGGRVV-SVSDDKS 308 (315)
Q Consensus 293 ~s~~~~~l~-s~~~d~~ 308 (315)
|+++|+.++ ..|....
T Consensus 433 f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHR 449 (479)
T ss_pred EccCCCEEEEecccccc
Confidence 999999654 4554443
No 85
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=5.9e-29 Score=215.59 Aligned_cols=247 Identities=17% Similarity=0.201 Sum_probs=187.1
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee-------------EEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI-------------ATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 127 (315)
..|......+++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+|.+..++++++.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34555556667666677777777777775544322 13567888999999999434466889999999
Q ss_pred EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecCCccceEEE
Q 021247 128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSL 206 (315)
Q Consensus 128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 206 (315)
++||+......... .........|...|.+++|+|++ ++|++++.|+.|++||+++++....+.+|...|.++
T Consensus 101 kIWdi~~~~~~~~~------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 101 MGWGIPEEGLTQNI------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred EEEecCCCcccccc------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999754221100 00011223566779999999975 689999999999999999999888999999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc-EEEEEEcCCCCeEEEEe----CCCcEEEEecCccc-eehc
Q 021247 207 VYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW-VLSVDASPDGAAITTGS----SDRTVKLWDLNMRA-AMQS 280 (315)
Q Consensus 207 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~-~~~~ 280 (315)
+|+| ++.+|++++.|+.|++||++.++.+..+.+|.+. ...+.|.+++..+++++ .|+.|++||++... ++..
T Consensus 175 a~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9998 6789999999999999999999888888888764 44677888877777654 47899999998643 3333
Q ss_pred cccc-ccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247 281 MTNH-TDQVWGVSFRPLGGRVVSVS-DDKSISLYEY 314 (315)
Q Consensus 281 ~~~~-~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~ 314 (315)
...+ ...+....|++++++|++++ .|++|++||+
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 3322 33566678999999998887 5999999997
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.4e-29 Score=205.83 Aligned_cols=241 Identities=25% Similarity=0.328 Sum_probs=206.9
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEEC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDV 89 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~ 89 (315)
....+.|+++.|-.++. +|++|...|.|++||..+...++.+.+|+.++..+.|+|++ .++++|+.|+.+++||+
T Consensus 65 srFk~~v~s~~fR~DG~----LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDGR----LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred HhhccceeEEEeecCCe----EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 35678999999998886 78999999999999977766788899999999999999966 67789999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
.+......+.+|.+.|.+.+++|....++++|+.||.|++||++.. ..+..++ |..+|..+.+-|
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--------------hg~pVe~vl~lp 206 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--------------HGCPVESVLALP 206 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--------------CCCceeeEEEcC
Confidence 9988766889999999999999999989999999999999999976 4444432 445588999999
Q ss_pred CCCEEEEecCCCcEEEEEccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247 169 DGRRIACGSMDGTISVFDVTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 247 (315)
.|..+++++. +.+++||+.+ ++.+..+..|...|+|+.+.. ++..|++++.|+++++||..+.+.+..+. -.++|.
T Consensus 207 sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvL 283 (487)
T KOG0310|consen 207 SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVL 283 (487)
T ss_pred CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-ccccee
Confidence 9999988754 5899999984 455666666999999999987 66899999999999999988877776654 578899
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 248 SVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 248 ~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
+++++|+++.++.|-.||-+.+=+.
T Consensus 284 siavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEecCCCceEEEecccceeeeehh
Confidence 9999999999999999998877643
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=3.1e-30 Score=207.91 Aligned_cols=249 Identities=20% Similarity=0.283 Sum_probs=203.8
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc----------eeeccccccceEEEEeCCCC-CEEEEee
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL----------ERTNTGHCLGVVSVAAHPSG-IIAASAS 79 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~----------~~~~~~h~~~v~~~~~~~~g-~~l~s~~ 79 (315)
-.|.++|+.+..+|..+ .++++++..+.|.|||.....- ...+.||...-..++|++.- -.+++++
T Consensus 121 i~h~gEVnRaRymPQnp---~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNP---NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred ccCCccchhhhhCCCCC---cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 37999999999999654 4899999999999999754321 11467888878889998854 5888999
Q ss_pred CCCeEEEEECCCCce-------eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC
Q 021247 80 LDSFVRVFDVDTNAS-------IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152 (315)
Q Consensus 80 ~d~~i~~w~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (315)
.|++|.+||+..... ...+..|...|..++|+|....++.+.++|+.+.|||+|++.. ....
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-----------~~~~ 266 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-----------KPSH 266 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-----------CCcc
Confidence 999999999986532 3467889999999999999998999999999999999996210 0111
Q ss_pred ccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247 153 DKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230 (315)
Q Consensus 153 ~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 230 (315)
....|...+.|++|+|- +..||+|+.|++|.+||+|+.+ .+..+.+|...|..+.|+|....+|++++.|+.+.+||+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 22356677999999994 5677899999999999998654 578889999999999999999999999999999999997
Q ss_pred CCC--------------eeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecC
Q 021247 231 EGK--------------SLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLN 273 (315)
Q Consensus 231 ~~~--------------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~ 273 (315)
..- +++-...||...|..+.|+|... .++|.+.|+.+.||+..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 521 23445578999999999999765 57899999999999875
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=2.3e-28 Score=203.18 Aligned_cols=267 Identities=16% Similarity=0.213 Sum_probs=201.2
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~ 109 (315)
.+++|++.|+.|++||..+.+....+..+. .+..+.++|+|..+ ++++.++.|++||..+++....+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 368999999999999998887777666543 46789999999866 5677899999999998877666654433 46788
Q ss_pred ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-cEEEEEcc
Q 021247 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-TISVFDVT 188 (315)
Q Consensus 110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-~i~i~d~~ 188 (315)
++|+++.+++++..++.+++||+++.+.+..+... ..+.+++|+|+++++++++.++ .+.+||..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--------------CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 99999988777778899999999887665544211 1246799999999999888765 57778998
Q ss_pred cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-------ccEEEEEEcCCCCeEEE-
Q 021247 189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-------SWVLSVDASPDGAAITT- 260 (315)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~s- 260 (315)
+++........ ..+..+.|+|++..+++++..++.|++||.++++.+..+..+. .....++++|+++.++.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 146 TYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 77765544322 2446789998544444566679999999999887766554221 12346889999987544
Q ss_pred EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEE-eCCCcEEEeecC
Q 021247 261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV-SDDKSISLYEYS 315 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~~~ 315 (315)
.+.++.|.+||+++++..... .+...+++++|+|+|++|+++ +.+++|++||..
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 455778999999887766544 244578999999999999876 568999999963
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-29 Score=191.06 Aligned_cols=233 Identities=23% Similarity=0.305 Sum_probs=205.4
Q ss_pred ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc
Q 021247 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~ 135 (315)
+.||..+++.+.++.+|.+|.+++.|.+.-||-..+++.+-++++|.+.||++..+.+... +++|+.|.++++||..++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~-liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKH-LITGSADQTAKLWDVETG 84 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcce-eeeccccceeEEEEcCCC
Confidence 5689999999999999999999999999999999999999999999999999999988775 579999999999999999
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----CCcEEEEEcc-------cceeeeeecCCccce
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----DGTISVFDVT-------RAKFLHHLEGHFMPV 203 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----dg~i~i~d~~-------~~~~~~~~~~~~~~v 203 (315)
+.+..+..+.+ |..+.|+++|++++.++. .+.|.++|++ ...+...+..+...+
T Consensus 85 k~la~~k~~~~--------------Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 85 KQLATWKTNSP--------------VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred cEEEEeecCCe--------------eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 99998865433 889999999999887754 4579999997 344566777788899
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc
Q 021247 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT 282 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 282 (315)
+.+-|.| -++.|++|..||.|.+||.+++ +.+.....|...|+++.++|+..+++|++.|.+-++||..+-..++++.
T Consensus 151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 151 TSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred eeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 9999998 5679999999999999999986 4555567899999999999999999999999999999999988888876
Q ss_pred ccccceEEEEEeeCCCEEEEEeC
Q 021247 283 NHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 283 ~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
. ..+|++.+++|...+++.+|.
T Consensus 230 t-e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 230 T-ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred e-cccccceecccccceEEecCC
Confidence 4 569999999998877776554
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.4e-31 Score=195.96 Aligned_cols=244 Identities=21% Similarity=0.321 Sum_probs=205.7
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
.+|...||........ ..-++++.|-+-++||.-++..+..+ .|..-|.+++|+.|.++|++|+.++.+|++|++
T Consensus 56 eghkgavw~~~l~~na----~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNA----TRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred eccCcceeeeecCchh----hhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 5888999888764322 24688899999999998777665554 477789999999999999999999999999998
Q ss_pred CCc-eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247 91 TNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169 (315)
Q Consensus 91 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 169 (315)
..+ ....+..|++.|..+-|....+.++ +..+|++||+||.++++.+.++..+.+ ++++.++++
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~--------------VtSlEvs~d 195 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSP--------------VTSLEVSQD 195 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCC--------------CcceeeccC
Confidence 765 4667889999999999998877765 558999999999999999998876543 789999999
Q ss_pred CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEE
Q 021247 170 GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLS 248 (315)
Q Consensus 170 ~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~ 248 (315)
|++|..+ ..+.|++||..+...+..... ...|.+...+| +...+++|+.|..++.||..++..+..+ .+|.++|.+
T Consensus 196 G~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc 272 (334)
T KOG0278|consen 196 GRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC 272 (334)
T ss_pred CCEEEEe-cCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence 9887665 557899999988877766553 34677888898 5589999999999999999998877775 899999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247 249 VDASPDGAAITTGSSDRTVKLWDLNMRAA 277 (315)
Q Consensus 249 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 277 (315)
+.|+|+|...++|+.||+|++|....++.
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999999876543
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=7.3e-30 Score=205.74 Aligned_cols=252 Identities=22% Similarity=0.333 Sum_probs=203.2
Q ss_pred ccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCce----------eEEeeCCcccEEEEEECCCCCeEEEEecCCCe
Q 021247 58 GHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNAS----------IATLEASPSEVWQMQFDPKGTTLAVAGGGSAS 126 (315)
Q Consensus 58 ~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 126 (315)
.|.+.|+.+..-|+. .++++.+..+.+.|||..+... -..+.+|..+-.+++|++.....+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 467778888877876 5677788889999999875422 12567787778899999998888899999999
Q ss_pred EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcc--cceeeeeecCCccce
Q 021247 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVT--RAKFLHHLEGHFMPV 203 (315)
Q Consensus 127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~--~~~~~~~~~~~~~~v 203 (315)
|.+||+........ ..........|...|..++|++- ...|++++.|+.+.|||+| +.+......+|..++
T Consensus 202 i~lwdi~~~~~~~~------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 202 ICLWDINAESKEDK------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred EEEEeccccccCCc------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999975332100 01111223567788999999994 5678899999999999999 556667778999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccce----
Q 021247 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAA---- 277 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~---- 277 (315)
.+++|+|.+..+|++|+.|++|.+||++.. ..+..+.+|...|.+|.|+|+ ..+|++++.|+.+.+||+..-..
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 999999999999999999999999999864 466788999999999999996 45889999999999999975221
Q ss_pred ----------ehcccccccceEEEEEeeCCCE-EEEEeCCCcEEEeecC
Q 021247 278 ----------MQSMTNHTDQVWGVSFRPLGGR-VVSVSDDKSISLYEYS 315 (315)
Q Consensus 278 ----------~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~i~~~~ 315 (315)
+-...+|...|....|+|+-.+ |+|+++|+.++||++.
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2234578899999999999876 5799999999999863
No 92
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.7e-28 Score=213.86 Aligned_cols=229 Identities=16% Similarity=0.252 Sum_probs=177.8
Q ss_pred eeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCC
Q 021247 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSS 156 (315)
Q Consensus 78 ~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (315)
|+.++.+++|+......+..+..|..+|.+++|+|....++++|+.|++|++||+.+... ...+. ........
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------~p~~~L~g 123 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------DPQCILKG 123 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc------cceEEeec
Confidence 667889999998887788889999999999999998555778999999999999975321 11100 00011234
Q ss_pred CCcceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247 157 SKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL 235 (315)
Q Consensus 157 ~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 235 (315)
|...|.+++|+|++..+ ++++.|+.|++||+++++....+. |...|.+++|+| ++.+|++++.|+.|++||+++++.
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcE
Confidence 66779999999988764 688999999999999888776665 557899999998 677899999999999999999998
Q ss_pred EEEeecccccEEE-----EEEcCCCCeEEEEeCCC----cEEEEecCc-cceehcccc--cccceEEEEEeeCCCEEEEE
Q 021247 236 VTAMSGHASWVLS-----VDASPDGAAITTGSSDR----TVKLWDLNM-RAAMQSMTN--HTDQVWGVSFRPLGGRVVSV 303 (315)
Q Consensus 236 ~~~~~~~~~~i~~-----~~~~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~ 303 (315)
+..+.+|.+.+.. ..|++++.++++++.|+ .|+|||++. .+++..+.. +...+......++|.++++|
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 8888899876533 23468888999988774 799999985 455554433 23344444445668889999
Q ss_pred eCCCcEEEeec
Q 021247 304 SDDKSISLYEY 314 (315)
Q Consensus 304 ~~d~~i~i~~~ 314 (315)
+.|++|++|++
T Consensus 282 kGD~tIr~~e~ 292 (568)
T PTZ00420 282 KGDGNCRYYQH 292 (568)
T ss_pred ECCCeEEEEEc
Confidence 99999999997
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=212.77 Aligned_cols=296 Identities=20% Similarity=0.300 Sum_probs=233.9
Q ss_pred hhhhhccccceEEEEEeec-------CCCCCcEEEEeeCCCcEEEEcCCC---Ccce----------eec----------
Q 021247 7 KSVENAHEESVWAVTWVPA-------TETRPALLLTGSLDETVKLWRPDD---MQLE----------RTN---------- 56 (315)
Q Consensus 7 ~~~~~~h~~~v~~v~~~~~-------~~~~~~~l~sgs~d~~v~~w~~~~---~~~~----------~~~---------- 56 (315)
...+.-|..-||.|.-.|. ..-.+..|+|+|.|++|++|+.+. ++.. +..
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 3445678889999987772 122345799999999999998753 1110 000
Q ss_pred --------------cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCC--CCeEEEE
Q 021247 57 --------------TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPK--GTTLAVA 120 (315)
Q Consensus 57 --------------~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~ 120 (315)
-+...++.+++++|+|+.|++|..-|.+|++++...+....++.|..+|.++.|+.- ++.++++
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence 012347899999999999999999999999999998888899999999999999743 4567889
Q ss_pred ecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC--CEEEEecCCCcEEEEEccc---ceee--
Q 021247 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG--RRIACGSMDGTISVFDVTR---AKFL-- 193 (315)
Q Consensus 121 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~s~dg~i~i~d~~~---~~~~-- 193 (315)
++.|.-|.+||....-.+ ......|...|+++.|...| ...++++.|..|.+-..+. ++..
T Consensus 522 asrdRlIHV~Dv~rny~l------------~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDL------------VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred ccCCceEEEEecccccch------------hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 999999999998642111 11233566779999998876 5778888887765433221 2111
Q ss_pred eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee---cccccEEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS---GHASWVLSVDASPDGAAITTGSSDRTVKLW 270 (315)
Q Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~iw 270 (315)
.+.......+.+++..| ...++++++.|+.|+|||++.+++++.+. +|.+....+..+|.|-++++.+.|.++.++
T Consensus 590 ~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV 668 (1080)
T ss_pred cccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence 11111234678899988 67799999999999999999998888765 577888899999999999999999999999
Q ss_pred ecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 271 DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 271 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
|+.+++++.++.+|++.|+.+.|.+|=++|++++.||.|-||.++
T Consensus 669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999999999999999999874
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.7e-29 Score=220.98 Aligned_cols=255 Identities=24% Similarity=0.408 Sum_probs=209.6
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC------------------CcceeeccccccceEEEEeCC
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD------------------MQLERTNTGHCLGVVSVAAHP 70 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~------------------~~~~~~~~~h~~~v~~~~~~~ 70 (315)
.+..|+..|+||.|+|++. +||+||.|+.|.+|.... ++....+.+|...|..+.|+|
T Consensus 64 ~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred eeccccCceeEEEECCCCC----eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 3578999999999999987 799999999999998652 123445678999999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247 71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150 (315)
Q Consensus 71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (315)
++.++++++.|++|.+||..+...+..++.|...|-.+.|+|-|+++ ++-++|++|++|++..+...+.++-|-.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwrt~dw~i~k~It~pf~---- 214 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWRTSDWGIEKSITKPFE---- 214 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCee-eeecCCceEEEEEcccceeeEeeccchh----
Confidence 99999999999999999999999999999999999999999999976 5678999999999887766666643321
Q ss_pred CCccCCCCcceEEEEECCCCCEEEEec--C--CCcEEEEEcccceeeeeecCCccceEEEEEcCC----CCc--------
Q 021247 151 PTDKSSSKKFVLSVAWSPDGRRIACGS--M--DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV----DPR-------- 214 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s--~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~-------- 214 (315)
......+++.+.|+|||++|++.. + -..+.|.+..+-+.-..+-+|..++.++.|+|. ...
T Consensus 215 ---~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 215 ---ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred ---hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence 223345688999999999999863 2 235888887777777889999999999999971 111
Q ss_pred ----EEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247 215 ----VLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275 (315)
Q Consensus 215 ----~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 275 (315)
.+++|+.|++|-||.....+.+... .-....|.+++|+|||..|+.++.||+|.++.+...
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6789999999999998654443222 223567999999999999999999999999998753
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-28 Score=187.84 Aligned_cols=242 Identities=17% Similarity=0.335 Sum_probs=195.2
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCC-eEEEEecCCCeEEEEec
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDT 132 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~ 132 (315)
..+..|.++++++++ +|.++++|+.|.+|++||+.....+..+-.|.+.|+++.|.+.-. .-+++|++||.|.+|+.
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 345789999999998 678999999999999999999988888888999999999987642 23568999999999999
Q ss_pred CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247 133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (315)
..++++.++. .|+..|+.++.+|.+++.++.+.|+.+++|++.+++.-..+.-.+ ....+.|+|.
T Consensus 115 ~~W~~~~slK-------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~- 179 (362)
T KOG0294|consen 115 GSWELLKSLK-------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQ- 179 (362)
T ss_pred CCeEEeeeec-------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCC-
Confidence 9988877663 355569999999999999999999999999998888655444322 2244899984
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEE
Q 021247 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVS 292 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 292 (315)
+.+++.++.+ .|-+|.+....+...+... ..+.++.|. ++..|++|+.|+.|++||.+...++..+.+|...|-++.
T Consensus 180 Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 180 GDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA 256 (362)
T ss_pred CCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence 5555555554 5889988776655544322 446666665 456899999999999999999888888999999999987
Q ss_pred E--eeCCCEEEEEeCCCcEEEeecC
Q 021247 293 F--RPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 293 ~--s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+ .|.+.+|+++|.||.|++||.+
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEcc
Confidence 4 3567899999999999999974
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=202.23 Aligned_cols=239 Identities=22% Similarity=0.317 Sum_probs=201.7
Q ss_pred eccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247 55 TNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 55 ~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 133 (315)
.+.||.++|.+++-+|.- ..+++|+.||.|++||+....++.+++.|.+.|..++++. . .+++++.|.+|+.|-+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--T-SFFTVGDDKTVKQWKID 137 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--c-ceEEecCCcceeeeecc
Confidence 347999999999999987 7889999999999999999999999999999999999976 2 34678899999999875
Q ss_pred CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247 134 TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP 213 (315)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 213 (315)
. ....++ ..+..+..+.-+..+..+++|++ .|.|||.....++..+......|.++.|+|...
T Consensus 138 ~-~p~~ti--------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 138 G-PPLHTI--------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred C-Ccceee--------------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 4 222222 22233556666666778888865 599999999999999998889999999999999
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEE
Q 021247 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVS 292 (315)
Q Consensus 214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~ 292 (315)
.+|++++.|+.|.+||++..+++....- ...-+.++|+|..-.+++|..|..++.+|++. .+++....+|..+|.+|.
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 9999999999999999998877655432 22346789999888899999999999999976 467888889999999999
Q ss_pred EeeCCCEEEEEeCCCcEEEeec
Q 021247 293 FRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 293 ~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|||.|.-+++||.|++|+||..
T Consensus 280 fsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred cCCCcchhccccccceEEEeec
Confidence 9999999999999999999975
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=212.66 Aligned_cols=243 Identities=21% Similarity=0.371 Sum_probs=203.5
Q ss_pred cccceE---EEEeCC-CCCEEEEeeCCCeEEEEECCCCc------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247 59 HCLGVV---SVAAHP-SGIIAASASLDSFVRVFDVDTNA------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVK 128 (315)
Q Consensus 59 h~~~v~---~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 128 (315)
|..++. .++.++ .+++|.+||.||.|++|++.... .+..++.|.+.|..+.....++. +++++.|-+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t-lIS~SsDtTVK 98 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT-LISASSDTTVK 98 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc-eEEecCCceEE
Confidence 445555 555554 55679999999999999987543 35677888888988888877764 57889999999
Q ss_pred EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE-CCCCCEEEEecCCCcEEEEEccccee----------eeeec
Q 021247 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW-SPDGRRIACGSMDGTISVFDVTRAKF----------LHHLE 197 (315)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~s~dg~i~i~d~~~~~~----------~~~~~ 197 (315)
+|+....+..+. .....|+++|.|+++ .++...+|+|+.|+.|++||+.++.. ...+.
T Consensus 99 ~W~~~~~~~~c~-----------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 99 VWNAHKDNTFCM-----------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred EeecccCcchhH-----------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 999865431111 112357889999999 78888999999999999999986622 12233
Q ss_pred -CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc
Q 021247 198 -GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA 276 (315)
Q Consensus 198 -~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 276 (315)
++..+|.+++..+ .+..+++|+..+-|++||.++.+.+-.+.+|..-|..+..+++|..+++++.||+|++||+...+
T Consensus 168 sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 7888999999887 56789999999999999999998888899999999999999999999999999999999999999
Q ss_pred eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
++.++..|.+.||++.-+|+-.++.+|+.||.|..-|+
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 99999999999999999999999999999999987664
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=194.01 Aligned_cols=248 Identities=23% Similarity=0.356 Sum_probs=197.5
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc--ccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT--GHCLGVVSVAAHPSGIIAASASLDSFVRVF 87 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~--~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w 87 (315)
+..|.++|+++.|.|... +|++|+.|++|+++|+......+.++ ....+|.+++|+|.|.+++.|....++|++
T Consensus 168 lYDH~devn~l~FHPre~----ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRET----ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred hhhccCcccceeecchhh----eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 568999999999999764 79999999999999987654433222 245689999999999999999999999999
Q ss_pred ECCCCceeEEe---eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247 88 DVDTNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164 (315)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (315)
|+++.++...- +.|.+.|.++.+++.++ ++++++.||.|++||--+.+++.++.- ......|.+.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~-----------AH~gsevcSa 311 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGN-----------AHGGSEVCSA 311 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHh-----------hcCCceeeeE
Confidence 99999886543 45778999999999988 568999999999999888877766531 1223458999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc--c---ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF--M---PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239 (315)
Q Consensus 165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 239 (315)
.|..+|+++++.+.|..+++|.+.+++.+....+.. + --+...|+..+...|+---..+.+.-||.++...+..+
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 999999999999999999999999999988776531 1 11223354434433433334577899999887554433
Q ss_pred -ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 240 -SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 240 -~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
.+|++.+..+.-+|.+.-+++++.|.++|+|--+
T Consensus 392 slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 392 SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 5899999999999999999999999999999643
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-27 Score=174.97 Aligned_cols=250 Identities=22% Similarity=0.387 Sum_probs=202.8
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--c---eeeccccccceEEEEeCC----CCCEEEEe-eC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--L---ERTNTGHCLGVVSVAAHP----SGIIAASA-SL 80 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~---~~~~~~h~~~v~~~~~~~----~g~~l~s~-~~ 80 (315)
+-|...|+|++|+|.+. ++++||.|.+|++..++... . ..++..|.+.|..++|-. .|.+|+++ ..
T Consensus 86 khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred cccCccEEEEEecCccC----eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 45788999999999886 79999999999988654322 1 224566888999999843 34577765 45
Q ss_pred CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
|..|++=|...++.+..+.+|.+.|..+- +.++ .++++|+.|.+|++||++-...+.++...... .......
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------~glessa 233 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------GGLESSA 233 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccC------CCcccce
Confidence 77788888889999999999999998763 2233 36789999999999999977666665432221 1123456
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---e-eE
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK---S-LV 236 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~-~~ 236 (315)
|..++..|.|++|++|..|....+||++.++.++.+..|...|+++.|+| +..++++++-|.+|++=|+++. + .+
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCce
Confidence 89999999999999999999999999999999999999999999999999 7889999999999999998753 1 22
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 3345789999999999998889999999999999764
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=199.79 Aligned_cols=245 Identities=20% Similarity=0.296 Sum_probs=205.7
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~ 83 (315)
+.+.+++.+-.++|+.+.|-++.. .+++++.|+.+++|+.+..++..++.||++.|+++.|......+++|+.|.+
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch
Confidence 456777888889999999988665 5899999999999999999999999999999999999888877999999999
Q ss_pred EEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 84 VRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 84 i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
|++||+....|..++-. ...+..+..++ ..+++|..|+.|++||.++.......+.. ..|++
T Consensus 285 iK~WDl~k~~C~kt~l~-~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--------------g~vtS 346 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVLP-GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLG--------------GRVTS 346 (459)
T ss_pred hhhhhhhhhheeccccc-cccccceEecc---eeeeecccccceEEEeccCCceeeEeecC--------------cceee
Confidence 99999999888776543 23455555543 25678999999999999988777665432 24899
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC----ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH----FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 239 (315)
+..++++..+.+++.|..+.++|+++......+... ....+.+.|+| ++.|+++|+.||.|+||+..++++...+
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEe
Confidence 999999999999999999999999988877665432 12367788999 7889999999999999999999888777
Q ss_pred ecccc--cEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 240 SGHAS--WVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 240 ~~~~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 54332 699999999999999999999999993
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-28 Score=204.43 Aligned_cols=242 Identities=28% Similarity=0.461 Sum_probs=207.3
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
+++.|++|.|++++. .|+.|-.+|.|+|||..+.+..+.+.+ |...|-+++|. +..+.+|+.|+.|..+|++.
T Consensus 216 ~~~~vtSv~ws~~G~----~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGS----HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCCceEEEEECCCCC----EEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 378999999999886 699999999999999988887777777 99999999998 67889999999999999998
Q ss_pred CceeEE-eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-C
Q 021247 92 NASIAT-LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-D 169 (315)
Q Consensus 92 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 169 (315)
.+.... +.+|...|..++|++++.++ ++|+.|+.+.|||....+.+..+ ..|...|..++|+| .
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~l-ASGgnDN~~~Iwd~~~~~p~~~~-------------~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQL-ASGGNDNVVFIWDGLSPEPKFTF-------------TEHTAAVKALAWCPWQ 355 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCee-ccCCCccceEeccCCCccccEEE-------------eccceeeeEeeeCCCc
Confidence 776544 78899999999999999865 78999999999999554444333 34667799999999 4
Q ss_pred CCEEEEe--cCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEEEeecccccE
Q 021247 170 GRRIACG--SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEGKSLVTAMSGHASWV 246 (315)
Q Consensus 170 ~~~l~~~--s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~i 246 (315)
...||+| +.|+.|++||..++..+..+.. ...|..+.|++...+++.+-+ .+..|.||+..+.+.+..+.+|...|
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV 434 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee
Confidence 6678875 5799999999999988877664 357999999996656655544 47789999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247 247 LSVDASPDGAAITTGSSDRTVKLWDLNMR 275 (315)
Q Consensus 247 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 275 (315)
..++++|+|..+++|+.|.++++|++-..
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999998754
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.3e-28 Score=192.94 Aligned_cols=249 Identities=19% Similarity=0.299 Sum_probs=209.2
Q ss_pred chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
++-.+..||+..|+.+.|.|... .++++|.|..|++|.............|..+|+.+..+|.|.||++++.|++.
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred hhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence 34456789999999999999765 59999999999999987766666677899999999999999999999999999
Q ss_pred EEEECCCCceeEEeeCC--cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 85 RVFDVDTNASIATLEAS--PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 85 ~~w~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
-..|+.++..+...... .-.+.+.+|||+|. ++.+|..|+.+++||+.....+..+. +|...|.
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fp-------------ght~~vk 393 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFP-------------GHTGPVK 393 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCC-------------CCCCcee
Confidence 99999999887766542 34588999999987 56789999999999998766555443 3566799
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEEEe
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GKSLVTAM 239 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~ 239 (315)
.++|+.+|.+|+++..|+.|++||++..+...++.. ...++.++.|.+ .+.+|+.++.|-.|++++.. ..+.+..+
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeehh
Confidence 999999999999999999999999998776665543 334789999987 56788888888888888854 44567777
Q ss_pred ecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
..|.+..+.+.|..+.+++++++.|..++++-+
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEeec
Confidence 888888999999999999999999999888754
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.3e-29 Score=192.60 Aligned_cols=242 Identities=19% Similarity=0.305 Sum_probs=204.2
Q ss_pred ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247 58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129 (315)
Q Consensus 58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 129 (315)
+....+-|..|+|||+++++|+.||.|.+||..+++... .+..+..+|.++.|+-+.. ++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEE
Confidence 445567889999999999999999999999999886443 3445678999999998866 5689999999999
Q ss_pred EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 209 (315)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 209 (315)
|.++++.++..+. ..|...|+++.|+.|+..+++++.|.++++.-+..++.+..+++|...|+...|.
T Consensus 290 Wri~tG~ClRrFd------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 290 WRIETGQCLRRFD------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred EEEecchHHHHhh------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 9999998886663 2345559999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--cccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehccc---c
Q 021247 210 PVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--GHASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSMT---N 283 (315)
Q Consensus 210 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~ 283 (315)
+ ++..+++++.||++++|+.++.+++..+. +...+|+++..-| +...++++...++|.|-++. +..++.+. .
T Consensus 358 ~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR 435 (508)
T KOG0275|consen 358 D-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR 435 (508)
T ss_pred C-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence 7 78899999999999999999988877664 3455688888777 45678889999999999886 45555543 2
Q ss_pred cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 284 HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 284 ~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..+...++.+||.|.++.+.+.|+.++.|.+
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 3456778999999999999999999998865
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=183.93 Aligned_cols=282 Identities=15% Similarity=0.259 Sum_probs=215.7
Q ss_pred eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE
Q 021247 17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA 96 (315)
Q Consensus 17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~ 96 (315)
-.|+.|++-+. +||.|+.||.|.|||+.+....+.+.+|..+|.+++|+++|..|++++.|..|.+||+..+.++.
T Consensus 26 a~~~~Fs~~G~----~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGD----YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcc----eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 67889998765 79999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe
Q 021247 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176 (315)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 176 (315)
.+. .+.+|+.+.|+|.....+++.-.+-.-.+.+... ..+++ ++.... ......-.+..|.+.|+++++|
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~-Lp~d~d------~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSV-LPKDDD------GDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceee-ccCCCc------cccccccccccccCCCCEEEEe
Confidence 776 4689999999998766666655554444444433 11111 111100 0011112234688899999999
Q ss_pred cCCCcEEEEEcccceeeeeecCCc-cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------ee--EEEeecc--cc
Q 021247 177 SMDGTISVFDVTRAKFLHHLEGHF-MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-------SL--VTAMSGH--AS 244 (315)
Q Consensus 177 s~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~--~~~~~~~--~~ 244 (315)
...|.+.++|.++.+++..++-.. ..|..+.++. .++.|+.-+.|+.|+.|+++.- ++ .+.++.- ..
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 999999999999998887776544 6788888885 7889999999999999997621 11 1111110 11
Q ss_pred cEEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehcccccc-cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 245 WVLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNHT-DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 245 ~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.=.++.|+.+|.+++.++. -..++||.-..|..++.+.+.. +....+.|+|-...+++. +.|.++||..
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 1235788999998876654 4569999999999988887766 567789999988888888 7899999964
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=183.49 Aligned_cols=248 Identities=25% Similarity=0.417 Sum_probs=196.1
Q ss_pred ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---eeEEeeCCcccEEEEEE-CCCCCeEEEEecCCCeEEEEe
Q 021247 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---SIATLEASPSEVWQMQF-DPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~d~~i~~~d 131 (315)
-..|.+.|-.+.....|++|++++.|++|||+.++++. .+.++.+|.+||+.++| +|.-..++++++.|+.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 35688888888888899999999999999999998764 46789999999999998 565555788999999999998
Q ss_pred cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccc-e--eeeeecCCccceEEE
Q 021247 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRA-K--FLHHLEGHFMPVRSL 206 (315)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~-~--~~~~~~~~~~~v~~~ 206 (315)
-.+++..+ ......|...+++++|.|. |-.|++++.||.|.+.+.... . .......|...|+++
T Consensus 87 e~~g~w~k-----------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 87 EENGRWTK-----------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred cCCCchhh-----------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 76543221 1122346677999999996 557899999999999987644 1 223456788999999
Q ss_pred EEcCC---C----------CcEEEEEeCCCeEEEEeCCCCe--eEEEeecccccEEEEEEcCCC----CeEEEEeCCCcE
Q 021247 207 VYSPV---D----------PRVLFSASDDTHVHMYDAEGKS--LVTAMSGHASWVLSVDASPDG----AAITTGSSDRTV 267 (315)
Q Consensus 207 ~~~~~---~----------~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~d~~i 267 (315)
.|.|. + .+.|++|+.|..++||+....+ .-..+.+|.+++..++|.|.- .++++++.||+|
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 99884 1 1569999999999999987653 334588999999999999953 589999999999
Q ss_pred EEEecCcc-ceeh--cccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 268 KLWDLNMR-AAMQ--SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 268 ~iwd~~~~-~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.||-.+.. +..+ .+....+.++.+.||+.|+.|+.++.|..|.+|.-
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 99976521 1111 12223478999999999999999999999999963
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=188.63 Aligned_cols=274 Identities=24% Similarity=0.410 Sum_probs=218.8
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD 111 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~ 111 (315)
.+++.-.|++++ .++.+.+.||.++|..++....-.++.+++.|.+.++|.++++.|+.++.+|.+.|.+++|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 355555555543 34567788999999999988877899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCeEEEEecCCc-ceee-----eecC-------CC----------CCC----CCCCccCCCCcceEEE
Q 021247 112 PKGTTLAVAGGGSASVKLWDTATW-NLIA-----TLSI-------PR----------PEG----LKPTDKSSSKKFVLSV 164 (315)
Q Consensus 112 ~~~~~~~~~~~~d~~i~~~d~~~~-~~~~-----~~~~-------~~----------~~~----~~~~~~~~~~~~i~~~ 164 (315)
+++. +++++++|++..||...-. +... .... ++ ..+ .+.....+|...|.++
T Consensus 200 ~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9876 6678999999999973210 0000 0000 00 000 0011234567778888
Q ss_pred EECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeeccc
Q 021247 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHA 243 (315)
Q Consensus 165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~ 243 (315)
.|-..|+.+++++.|.+..+||++++..+..+.+|..+.+.+.-+| ..+++++++.|.+.++||.+.. ..+..+++|.
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 9999999999999999999999999999999999999999888888 6789999999999999998843 4566789999
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..++++.|..+.+ +++|+.|.+|++||++. +.++.++.. ..+++.++.+..+..++.--+.+.|+|||++
T Consensus 358 dtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred cceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecC
Confidence 9999999997754 79999999999999976 456777654 3578889999877777777788999999975
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-26 Score=178.26 Aligned_cols=245 Identities=17% Similarity=0.223 Sum_probs=194.9
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEE-ecCCCeEEEEec
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA-GGGSASVKLWDT 132 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~d~~i~~~d~ 132 (315)
+.+..-...|+++.|+++|..+++++.|.+++++|..++..+.++..+..-+..++|-...+.++.+ .-.|.+|+.-++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3344456689999999999999999999999999999999999988777777778876554544332 334889999999
Q ss_pred CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247 133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (315)
.+.+.++-+. +|+..|++++.+|-++.+++++.|++|++||++..++...+.....+ .++|.| .
T Consensus 88 ~dNkylRYF~-------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp-~ 151 (311)
T KOG1446|consen 88 HDNKYLRYFP-------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP-E 151 (311)
T ss_pred ecCceEEEcC-------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC-C
Confidence 8877776663 56778999999999999999999999999999977665555443333 467888 5
Q ss_pred CcEEEEEeCCCeEEEEeCCCC---ee-EEEee-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247 213 PRVLFSASDDTHVHMYDAEGK---SL-VTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~---~~-~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
+-+++.+.....|++||++.. .. .-.+. +.....+.+.|+|+|++++.+...+.+++.|.-.|....+++.+...
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC
Confidence 667777777779999998742 11 11122 33556789999999999999999999999999999988887776533
Q ss_pred ---eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 288 ---VWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 288 ---v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.-+..|+|++++++++++||+|.+|+.
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 257899999999999999999999986
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=181.95 Aligned_cols=283 Identities=17% Similarity=0.267 Sum_probs=202.8
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce--eecc--ccccceEEEEeCCCCC-EEEEeeCCC
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTNT--GHCLGVVSVAAHPSGI-IAASASLDS 82 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~--~~~~--~h~~~v~~~~~~~~g~-~l~s~~~d~ 82 (315)
.++++|.++|++++|+.+++ .|+|++.|++|++|+.++.... +.+. -.-+-.+.+.|.||.. .+++.-...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 56899999999999999887 5999999999999998754321 1111 0112467889999986 455666677
Q ss_pred eEEEEECCCCce----e--EEe------eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247 83 FVRVFDVDTNAS----I--ATL------EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150 (315)
Q Consensus 83 ~i~~w~~~~~~~----~--~~~------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (315)
++++|.....+. . ... +.|.-.+..+-.-..+ .++.+++.|..|.+|+++ ++.+..+.....
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~---- 229 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQS---- 229 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccc----
Confidence 899998654321 0 011 1122334444443333 456788999999999998 676666543221
Q ss_pred CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc---cc-----eeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247 151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT---RA-----KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
.-...+.+|+|+++++++-...|++|.+- .| .....+++|...|..++|+| +...+++.+.|
T Consensus 230 ---------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkD 299 (420)
T KOG2096|consen 230 ---------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKD 299 (420)
T ss_pred ---------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecC
Confidence 13467899999999999988899999862 22 23456889999999999998 78899999999
Q ss_pred CeEEEEeCCCC-------eeEEEe----ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-ccccceEE
Q 021247 223 THVHMYDAEGK-------SLVTAM----SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWG 290 (315)
Q Consensus 223 ~~i~~wd~~~~-------~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~ 290 (315)
|++++||..-+ +.++.. ..-.+....++.+|+|+.|+.+ ....+.++..+.++...+++ .|++.|.+
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceee
Confidence 99999997532 111111 1112334489999999987754 45679999999888777664 48999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEe
Q 021247 291 VSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 291 ~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
++|+++|++++++|+ +-++++
T Consensus 379 is~~~~g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 379 ISYSSDGKYIATCGD-RYVRVI 399 (420)
T ss_pred EEecCCCcEEeeecc-eeeeee
Confidence 999999999998875 555554
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=193.05 Aligned_cols=267 Identities=19% Similarity=0.273 Sum_probs=206.1
Q ss_pred EEEeeCCC-cEEEEcCCCCcceeecccc-ccceEEEEeCCCCCEEEEe-eCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247 33 LLTGSLDE-TVKLWRPDDMQLERTNTGH-CLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109 (315)
Q Consensus 33 l~sgs~d~-~v~~w~~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~ 109 (315)
+.+++.|. ++.+||+.++....++++- ...-.++..- .+.+++++ .....+.+|.+...........-+++|.+++
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 34445554 4899999988766665543 1111122111 12444444 4456799999987665554555678899999
Q ss_pred ECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-
Q 021247 110 FDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT- 188 (315)
Q Consensus 110 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~- 188 (315)
-+|.|.++ ++|...+.+++|.+.+++++..+. .|-..|+++.|+-||.+|++|++||.|.+|++.
T Consensus 89 s~n~G~~l-~ag~i~g~lYlWelssG~LL~v~~-------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 89 SSNLGYFL-LAGTISGNLYLWELSSGILLNVLS-------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cCCCceEE-EeecccCcEEEEEeccccHHHHHH-------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 99998755 566688999999999998876653 344459999999999999999999999999862
Q ss_pred --------cceeeeeecCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247 189 --------RAKFLHHLEGHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT 259 (315)
Q Consensus 189 --------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (315)
+-+++..+..|..+|+++...+- -..++++++.|.++++||+..+.++.... ....|.+++.+|-++.+.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 33567788899999999988763 23589999999999999999998876654 356789999999999999
Q ss_pred EEeCCCcEEEEecCccc----------------eehccccccc--ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 260 TGSSDRTVKLWDLNMRA----------------AMQSMTNHTD--QVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 260 s~~~d~~i~iwd~~~~~----------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
.|+.+|.|.+.++.... ....+.+|++ +|++++++.||..|++|+.||+++|||..
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 99999999988875322 2334567887 99999999999999999999999999963
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=200.48 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=209.8
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeecc---------------ccc---------cceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNT---------------GHC---------LGVVSVAAHPSGIIAASASLDSFVRV 86 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~---------------~h~---------~~v~~~~~~~~g~~l~s~~~d~~i~~ 86 (315)
.+|+.|+.+|.|++|++++.....+++ .|. ....++.|++....+.+.-.|..+++
T Consensus 271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv 350 (1080)
T KOG1408|consen 271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV 350 (1080)
T ss_pred ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence 479999999999999987644322211 111 12457789999999999999999999
Q ss_pred EECCCCcee---EEeeCCcccEEEEEECCC----------CCeEEEEecCCCeEEEEecCCcc--eeeeecC--------
Q 021247 87 FDVDTNASI---ATLEASPSEVWQMQFDPK----------GTTLAVAGGGSASVKLWDTATWN--LIATLSI-------- 143 (315)
Q Consensus 87 w~~~~~~~~---~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~-------- 143 (315)
||+++-..+ ..+-.|...||.+.--|- ...-+++++.|++|++||+.... .+...++
T Consensus 351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki 430 (1080)
T KOG1408|consen 351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI 430 (1080)
T ss_pred EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence 999875433 233456677887765441 01235789999999999997521 1100000
Q ss_pred CCC---------CCCCC-----CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEc
Q 021247 144 PRP---------EGLKP-----TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 209 (315)
Q Consensus 144 ~~~---------~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 209 (315)
+.. ..... ......+..+++++.+|+|++||+|-.-|.+++||+...+....+..|..+|.++.|+
T Consensus 431 ~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 431 PYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred ccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence 000 00000 0011234458999999999999999999999999999999999999999999999998
Q ss_pred CC--CCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccc------------------------------------------
Q 021247 210 PV--DPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHAS------------------------------------------ 244 (315)
Q Consensus 210 ~~--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~------------------------------------------ 244 (315)
.. ..++|++++.|+.|++||.... .++..+.+|..
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~ 590 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH 590 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc
Confidence 53 3468999999999999997532 22222333333
Q ss_pred -------cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 245 -------WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 245 -------~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+.+++..|..+++++++.|+.|+||++.+++..+.+.+ |++....+.+.|.|.||++.+.|+++.+|||
T Consensus 591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 345667777778999999999999999999988877754 6677889999999999999999999999998
Q ss_pred C
Q 021247 315 S 315 (315)
Q Consensus 315 ~ 315 (315)
.
T Consensus 671 ~ 671 (1080)
T KOG1408|consen 671 V 671 (1080)
T ss_pred c
Confidence 4
No 111
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=199.82 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=242.8
Q ss_pred eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE
Q 021247 17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA 96 (315)
Q Consensus 17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~ 96 (315)
|+++. .|+.. . +-++.|+.+|.+++|+..++++..+++++...|+++--+|-=..++.|-.+|+|.++|++.++.+.
T Consensus 162 Ital~-HP~TY-L-NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 162 ITALL-HPSTY-L-NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred eeeEe-cchhh-e-eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 66664 34442 2 358899999999999999999999999999999999999988899999999999999999999999
Q ss_pred EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec--------------------------------CC
Q 021247 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS--------------------------------IP 144 (315)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--------------------------------~~ 144 (315)
+++..-++|..++|..+|+.++++|...|.+.+||+...+.+.... .+
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 9998779999999999999999999999999999997543221110 00
Q ss_pred CCC----------------------------------------------------------------CC--------CC-
Q 021247 145 RPE----------------------------------------------------------------GL--------KP- 151 (315)
Q Consensus 145 ~~~----------------------------------------------------------------~~--------~~- 151 (315)
.+. +. ++
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 000 00 00
Q ss_pred -------------------------------------------CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 152 -------------------------------------------TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 152 -------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
.........+++++.++.|++.+.|+..|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 0000011235688999999999999999999999999
Q ss_pred cceeeeee---cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247 189 RAKFLHHL---EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR 265 (315)
Q Consensus 189 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 265 (315)
.+.....+ ..|..+|+.++... -.+.+++++.+|.+++||.+...++..+.- ...+..+..+....+++.+..|-
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred cCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCce
Confidence 99888777 48999999999875 456899999999999999998887776653 33466777777777899999999
Q ss_pred cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.|+++|..+++..+.+.+|++.|++++|||||++|++++.|++||+||+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 9999999999999999999999999999999999999999999999997
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-29 Score=211.58 Aligned_cols=243 Identities=21% Similarity=0.284 Sum_probs=197.8
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---CcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCC
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~ 91 (315)
.+..|.|.... ..+|||++..|.|.+||+.. .++...+..|...+.++.|++.. .+|++|+.||+|+.||++.
T Consensus 89 S~~DVkW~~~~---~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 89 SAADVKWGQLY---SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ehhhcccccch---hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 45567787433 35899999999999999876 44555678899999999999876 7889999999999999999
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
.....++......|..|+|+|...+.++++.+.|.+++||+|.... ...+...|..+|.|+.|+|++.
T Consensus 166 ~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r------------~~~k~~AH~GpV~c~nwhPnr~ 233 (839)
T KOG0269|consen 166 KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR------------CEKKLTAHNGPVLCLNWHPNRE 233 (839)
T ss_pred ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh------------HHHHhhcccCceEEEeecCCCc
Confidence 9998888888889999999998888889999999999999985321 1123456788899999999999
Q ss_pred EEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCee-EEEeecccccEE
Q 021247 172 RIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSPVDPRVLFSASD--DTHVHMYDAEGKSL-VTAMSGHASWVL 247 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~-~~~~~~~~~~i~ 247 (315)
+||+|+.|+.|+|||....+......- ...++..++|-|..+..|++++. |..|+|||++..-+ ...+..|...++
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 999999999999999976554322222 24688999999988888888864 78999999986544 456788999999
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEecC
Q 021247 248 SVDASP-DGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 248 ~~~~~~-~~~~l~s~~~d~~i~iwd~~ 273 (315)
.++|.. +...+.++++|++|..=.++
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhhh
Confidence 999976 45578999999988544433
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.2e-28 Score=180.23 Aligned_cols=254 Identities=23% Similarity=0.283 Sum_probs=198.3
Q ss_pred hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---cceeeccccccceEEEEeCC--CCCEEEEeeCC
Q 021247 7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---QLERTNTGHCLGVVSVAAHP--SGIIAASASLD 81 (315)
Q Consensus 7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---~~~~~~~~h~~~v~~~~~~~--~g~~l~s~~~d 81 (315)
+.+...|++-|..+..--.+. .|+|+|.|++|+|+...+. ++..++.||.+||..+.|-. .|.+|++++.|
T Consensus 4 q~idt~H~D~IHda~lDyygk----rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGK----RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcc----eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 456788999988887544443 6999999999999987653 45667899999999999854 89999999999
Q ss_pred CeEEEEECCCCce--eEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 82 SFVRVFDVDTNAS--IATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 82 ~~i~~w~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
|.|.||.-++++- ......|...|++++|-|.+ ..++++++.||.|.+.+.+....- ........|.
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w----------~t~ki~~aH~ 149 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW----------TTSKIVFAHE 149 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc----------cchhhhhccc
Confidence 9999999888743 23456688899999999976 456678889999999887653110 0011123455
Q ss_pred cceEEEEECCC---C-----------CEEEEecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCC---CcEEEEE
Q 021247 159 KFVLSVAWSPD---G-----------RRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVD---PRVLFSA 219 (315)
Q Consensus 159 ~~i~~~~~~~~---~-----------~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~---~~~l~s~ 219 (315)
..+++++|.|. | +.|++|+.|..|++|+...++. ...+.+|..-|++++|.|.. ...++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 55889999885 4 6799999999999999877643 34588999999999999964 3579999
Q ss_pred eCCCeEEEEeCCCC--e-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 220 SDDTHVHMYDAEGK--S-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 220 ~~d~~i~~wd~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
+.||++.||..... + ....+......++.+.||+.|.+|+.++.|+.|.+|.-+.
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999999986532 1 1222344567899999999999999999999999997654
No 114
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=5.5e-27 Score=198.14 Aligned_cols=294 Identities=21% Similarity=0.338 Sum_probs=224.3
Q ss_pred hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-------ceeeccccccceEEEEeCCCCCEEEEe
Q 021247 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-------LERTNTGHCLGVVSVAAHPSGIIAASA 78 (315)
Q Consensus 6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-------~~~~~~~h~~~v~~~~~~~~g~~l~s~ 78 (315)
++.++-||++.|+++.|.|... .|+++|.|.++.+|.++... ......|...+.....|+|+++.+++-
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~----~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGL----DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred hhhhhcCcccceEEEEEccchh----hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 5577789999999999999874 59999999999999987541 112234566788999999999999999
Q ss_pred eCCCeEEEEECCCC-c--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247 79 SLDSFVRVFDVDTN-A--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS 155 (315)
Q Consensus 79 ~~d~~i~~w~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (315)
+.-|..++|..++. . ....+.+|.+.|.+++|+|.|.++ ++.+.|.+-|++-.-. +...--.+.+|+
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGefl-Lsvs~DQTTRlFa~wg-~q~~wHEiaRPQ-------- 404 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFL-LSVSLDQTTRLFARWG-RQQEWHEIARPQ-------- 404 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEE-EEeccccceeeecccc-cccceeeecccc--------
Confidence 99999999993332 1 223457788999999999999966 5667899988876431 111100111111
Q ss_pred CCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-------------------------------------------ce-
Q 021247 156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-------------------------------------------AK- 191 (315)
Q Consensus 156 ~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-------------------------------------------~~- 191 (315)
.|..-++|+++-+....|++|..+.-+++|+... +.
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 1223367777777666777887777788876311 00
Q ss_pred --------------------------------eeeeecCCccceEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCe
Q 021247 192 --------------------------------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT-----HVHMYDAEGKS 234 (315)
Q Consensus 192 --------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 234 (315)
.++++.+|...|.+++.+| .+++++++.... -|++|+.....
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~ 563 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWL 563 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchh
Confidence 0113458888999999998 678999887643 48999999888
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc----eehcccccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA----AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 310 (315)
.++.+.+|.-.|+.++|||++++|++.+.|+++.+|...... .......|+.-||++.|+|+.++++|+|.|++|+
T Consensus 564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK 643 (764)
T ss_pred hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence 888899999999999999999999999999999999874322 1233568999999999999999999999999999
Q ss_pred Eeec
Q 021247 311 LYEY 314 (315)
Q Consensus 311 i~~~ 314 (315)
+|..
T Consensus 644 VW~~ 647 (764)
T KOG1063|consen 644 VWEE 647 (764)
T ss_pred EEec
Confidence 9975
No 115
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-26 Score=178.94 Aligned_cols=254 Identities=18% Similarity=0.380 Sum_probs=187.0
Q ss_pred ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc----eeEEeeCCcccEEEEEEC-CCCCeEEEEecCCCeEEEE
Q 021247 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA----SIATLEASPSEVWQMQFD-PKGTTLAVAGGGSASVKLW 130 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~----~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~~ 130 (315)
..+|.+-|.++.|.+.|..+++++.|++++|||.+... +....+.|.+.|+.+.|- |.-..++++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999976543 445678899999999995 5445678899999999999
Q ss_pred ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC--CCEEEEecCCCcEEEEEcccce------eeeeec-----
Q 021247 131 DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD--GRRIACGSMDGTISVFDVTRAK------FLHHLE----- 197 (315)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~------~~~~~~----- 197 (315)
.-...+.. .+...-.+.......+..|+.+.|.|. |-.+++++.||.++||+..... ....+.
T Consensus 89 EE~~~~~~----~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 89 EEQEKSEE----AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eecccccc----cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 75211000 000000000111223445899999994 7789999999999999864221 112222
Q ss_pred --CCccceEEEEEcCC--CCcEEEEEeCC-----CeEEEEeCCCC----eeEEEeecccccEEEEEEcCC-C---CeEEE
Q 021247 198 --GHFMPVRSLVYSPV--DPRVLFSASDD-----THVHMYDAEGK----SLVTAMSGHASWVLSVDASPD-G---AAITT 260 (315)
Q Consensus 198 --~~~~~v~~~~~~~~--~~~~l~s~~~d-----~~i~~wd~~~~----~~~~~~~~~~~~i~~~~~~~~-~---~~l~s 260 (315)
.+..+..|+.|+|. ...+|+.|+++ +.++||..... ..+..+.+|..+|++++|.|+ | .+||+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 35567789999874 34577777776 46778865422 234567799999999999996 2 48999
Q ss_pred EeCCCcEEEEecCcc--------------------ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 261 GSSDRTVKLWDLNMR--------------------AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
++.|| |+||.+... +.+..+.+|..+||.+.|.--|..|++.|+||.||+|+-
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999 999998631 123346789999999999999999999999999999963
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=198.16 Aligned_cols=296 Identities=22% Similarity=0.309 Sum_probs=211.6
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce------eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE------RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~------~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
++..|++..+ ..-+|+.+..||.|.++|....+.. +....|..+|..+.+-|....|++++.|.++|+||++.
T Consensus 53 f~~sFs~~~n-~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPN-KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCC-ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 4577877654 3568999999999999997544332 44567999999999999667899999999999999999
Q ss_pred CceeEE--eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee------eecCCCCC---CCCCCcc-----C
Q 021247 92 NASIAT--LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA------TLSIPRPE---GLKPTDK-----S 155 (315)
Q Consensus 92 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~------~~~~~~~~---~~~~~~~-----~ 155 (315)
...+.. +.+|...|-+++|.|.+..++++|+.||.|.|||++-..... .+...... ...+..+ .
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 887765 788999999999999999999999999999999997533110 00000001 1111100 1
Q ss_pred CCCcceEE---EEECCCCCEEEEecC-CCcEEEEEcccceeeeee--------cCC---ccceEEEEEcCCCCcEEEEEe
Q 021247 156 SSKKFVLS---VAWSPDGRRIACGSM-DGTISVFDVTRAKFLHHL--------EGH---FMPVRSLVYSPVDPRVLFSAS 220 (315)
Q Consensus 156 ~~~~~i~~---~~~~~~~~~l~~~s~-dg~i~i~d~~~~~~~~~~--------~~~---~~~v~~~~~~~~~~~~l~s~~ 220 (315)
.+...|.+ +.+..|...||+++. |+.|++||+++....... ..| ...+.++.....+.++++++.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 11122333 555567888888776 999999999876543221 122 223455555554555555555
Q ss_pred CCCeEEEEeCCCC--eeEEEeeccccc--EEEEEEcCCCCeEEEEeCCCcEEEEecCccc-eehcccccccceEEEEEee
Q 021247 221 DDTHVHMYDAEGK--SLVTAMSGHASW--VLSVDASPDGAAITTGSSDRTVKLWDLNMRA-AMQSMTNHTDQVWGVSFRP 295 (315)
Q Consensus 221 ~d~~i~~wd~~~~--~~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~ 295 (315)
|+.|++|++.+. ..+..+.++... -..-..+|++.++++|+.|...++|.+...+ ....+.+|...|+.|+|.|
T Consensus 292 -D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 292 -DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred -CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 999999998754 233333333211 1233479999999999999999999998754 4566789999999999998
Q ss_pred CC-CEEEEEeCCCcEEEeecC
Q 021247 296 LG-GRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 296 ~~-~~l~s~~~d~~i~i~~~~ 315 (315)
.. ..++++++|-+++||+++
T Consensus 371 S~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ccCCCceeeccCcceEEEecc
Confidence 63 458888999999999863
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3e-29 Score=212.62 Aligned_cols=253 Identities=26% Similarity=0.411 Sum_probs=220.9
Q ss_pred EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECC
Q 021247 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDP 112 (315)
Q Consensus 33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~ 112 (315)
+..+..+-.+++|+. +.+..|...+.++..-..+..+++|+.|..+-+|.+.....+..+..|..+|.++.|++
T Consensus 7 ~m~~~~~t~Lr~~~~------~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDT------REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred cceeeeeeccccccc------hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence 444455566777764 33456888889998878889999999999999999998888888999999999999999
Q ss_pred CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee
Q 021247 113 KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF 192 (315)
Q Consensus 113 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~ 192 (315)
... ++++|..+|+|++||+..++.+.++. .|...+.++.|+|-+.+++.|+.|+.+.+||.+..-+
T Consensus 81 ~E~-LlaagsasgtiK~wDleeAk~vrtLt-------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEAKIVRTLT-------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred chh-hhcccccCCceeeeehhhhhhhhhhh-------------ccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence 866 56788899999999999887776654 3444578999999999999999999999999997778
Q ss_pred eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
...+.+|...+..+.|+| ++++++++++|..+++||...+++...+..|.+.+..+.|+|..-++++|+.|++|++||+
T Consensus 147 ~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecc
Confidence 888888999999999999 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306 (315)
Q Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 306 (315)
++.+.+.........|.+++|+|++..+++|..+
T Consensus 226 etfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 226 ETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9888777766667889999999999888877654
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.7e-27 Score=188.45 Aligned_cols=281 Identities=16% Similarity=0.267 Sum_probs=218.4
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceeeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVD 90 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~ 90 (315)
...|++|.|.|..+ ++++|+.|++++||..+... .+..+.-...+|.+..|.|+|. .+++++.....+.||+.
T Consensus 213 ~~~I~sv~FHp~~p----lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP----LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCc----eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 46899999999765 79999999999999876432 2233333456899999999998 88899999999999998
Q ss_pred CCceeEE--eeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC
Q 021247 91 TNASIAT--LEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS 167 (315)
Q Consensus 91 ~~~~~~~--~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 167 (315)
+.+.... ..+. ...+.....+|++++++ ..+..|.|.+--..+++.+.++.++. .+..++|+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G~~G~I~lLhakT~eli~s~KieG--------------~v~~~~fs 353 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIA-IAGNNGHIHLLHAKTKELITSFKIEG--------------VVSDFTFS 353 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEE-EcccCceEEeehhhhhhhhheeeecc--------------EEeeEEEe
Confidence 8764332 1112 23455667789988665 45688999999998888887776532 38899999
Q ss_pred CCCCEEEEecCCCcEEEEEcccceeeeeecCCcc-ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC------CeeEEEee
Q 021247 168 PDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYDAEG------KSLVTAMS 240 (315)
Q Consensus 168 ~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~ 240 (315)
.+++.|++++.+|.|.+||+++..++..+..... .-++++.++ ++.+|++|+..|.|.|||.++ .+.+..+.
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 9999999999999999999999888777653211 224566666 678999999999999999653 23445555
Q ss_pred cccccEEEEEEcCCCCeEEEEeC--CCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 241 GHASWVLSVDASPDGAAITTGSS--DRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.-...|+++.|+|+.++|+.++. +..+|+-.+.+......++. .-+.|++++|||.+.++|.|..+|.+.||.+
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 55678999999999998877664 66799998887665544433 3357999999999999999999999999986
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3e-27 Score=193.62 Aligned_cols=257 Identities=21% Similarity=0.309 Sum_probs=190.6
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc----eeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA----SIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVK 128 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 128 (315)
.++++|+..|.++.+.|.|..+++|+.|.+|++||+..-. ....+.. ....|.+++|++.+..+++. ++..+.+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv-sg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV-SGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE-ecCccee
Confidence 3457888999999999999999999999999999997532 2222222 23468999999999877654 4568999
Q ss_pred EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEccccee-eeee-----cCCcc
Q 021247 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKF-LHHL-----EGHFM 201 (315)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~-~~~~-----~~~~~ 201 (315)
|+|-...+.........- -.......+|...+++-+|+|.. +.|++++.||++++||+...+. ++.+ .+..-
T Consensus 240 l~DRdG~~~~e~~KGDQY-I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQY-IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCceeeeeeccchh-hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 999876655544332210 01112245677789999999965 5789999999999999975442 2222 13345
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEEeecccc--cEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-
Q 021247 202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS---LVTAMSGHAS--WVLSVDASPDGAAITTGSSDRTVKLWDLNMR- 275 (315)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~- 275 (315)
+++..+|+| ++.++++|..||.|.+|+..+.. ....-..|.. .|++|.||++|++|++=+.|+++++||++..
T Consensus 319 ~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 319 PVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 788999998 66789999999999999975432 2233456766 8999999999999999999999999999864
Q ss_pred ceehcccccc--cceEEEEEeeCCCEEEEEeC------CCcEEEee
Q 021247 276 AAMQSMTNHT--DQVWGVSFRPLGGRVVSVSD------DKSISLYE 313 (315)
Q Consensus 276 ~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~------d~~i~i~~ 313 (315)
+++.+..+-. -+-+.++|||+.+.|++|.. .|++.+||
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 4565544322 24568999999999888765 45666665
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-25 Score=188.82 Aligned_cols=278 Identities=19% Similarity=0.303 Sum_probs=227.8
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-eeeccccc-cceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-ERTNTGHC-LGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-~~~~~~h~-~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
..+|.+++++..++ .||.+=.||.|.+|++...-+ ...+.++. ..|-+++|. +|..|.|.+.+|.|--||+.+
T Consensus 25 Ps~I~slA~s~kS~----~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN----QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC----ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 35889999998775 389999999999999876543 44455554 578999998 566778899999999999999
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
.+....++...++||+++.+|.+..+ ..|++||.+..++...++......++++ +.++.++.|+|++.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l-~IgcddGvl~~~s~~p~~I~~~r~l~rq-----------~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTIL-AIGCDDGVLYDFSIGPDKITYKRSLMRQ-----------KSRVLSLSWNPTGT 167 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceE-EeecCCceEEEEecCCceEEEEeecccc-----------cceEEEEEecCCcc
Confidence 99999999899999999999998765 4567899888888877776665555443 35699999999999
Q ss_pred EEEEecCCCcEEEEEcccceeeeee-------cC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247 172 RIACGSMDGTISVFDVTRAKFLHHL-------EG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 243 (315)
.++.|+.||.|++||...+..+... .. ....|+++.|-. +..|++|..-|+|.+||...+++++....|.
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHD 245 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhh
Confidence 9999999999999999887765521 11 234578888874 4589999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce----ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA----MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
+.|.+++.++++..|+++|.|++|.-+.....+. ......|...|.+++..++ .+++||.|.++.+-
T Consensus 246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 9999999999999999999999998887765432 3334578888999999887 88999999988763
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.4e-26 Score=174.80 Aligned_cols=264 Identities=20% Similarity=0.324 Sum_probs=194.4
Q ss_pred hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----CcceeeccccccceEEEEeC-C-CCCEEEEee
Q 021247 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----MQLERTNTGHCLGVVSVAAH-P-SGIIAASAS 79 (315)
Q Consensus 6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----~~~~~~~~~h~~~v~~~~~~-~-~g~~l~s~~ 79 (315)
..++..+|.+-|.+|.|-+-+. .++|||.|++|+|||... ..+...-+.|.+.|..+.|- | -|+.+++++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GR----RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGR----RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ccccccCCcceeeeeeecccCc----eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 3567889999999999999887 499999999999999532 33455567899999999874 3 589999999
Q ss_pred CCCeEEEEECCCC---------ceeEEeeCCcccEEEEEECCCCC-eEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 80 LDSFVRVFDVDTN---------ASIATLEASPSEVWQMQFDPKGT-TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 80 ~d~~i~~w~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
.|+++.||.=... ....++......|..++|.|... ..+++++.||++|||+.-.--.+..+++......
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 9999999975211 12345666778899999999753 4567888999999998643211111111110000
Q ss_pred CCCccCCCCcceEEEEECCC---CCEEEEecCC-----CcEEEEEcccc----eeeeeecCCccceEEEEEcCCCC---c
Q 021247 150 KPTDKSSSKKFVLSVAWSPD---GRRIACGSMD-----GTISVFDVTRA----KFLHHLEGHFMPVRSLVYSPVDP---R 214 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~---~~~l~~~s~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~ 214 (315)
-+.....++....|+.|+|. ..+|++|+.+ +.++||....+ ..+..+.+|..+|++++|.|.-+ +
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 00011223445678999974 4578888776 46888865322 23556779999999999999644 4
Q ss_pred EEEEEeCCCeEEEEeCCCC--------------------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 215 VLFSASDDTHVHMYDAEGK--------------------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 215 ~l~s~~~d~~i~~wd~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
+|++++.|| |+||.++.. +.+..+.+|.+.++.+.|+-.|.+|++.|.||.||+|..+.
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 789999999 999997631 23456778999999999999999999999999999997654
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.5e-27 Score=180.86 Aligned_cols=206 Identities=22% Similarity=0.310 Sum_probs=169.4
Q ss_pred cccccceEEEEeCC-CCCEEEEeeCCCeEEEEECCCCc------------eeE---EeeCCcccEEEEEECCCCCeEEEE
Q 021247 57 TGHCLGVVSVAAHP-SGIIAASASLDSFVRVFDVDTNA------------SIA---TLEASPSEVWQMQFDPKGTTLAVA 120 (315)
Q Consensus 57 ~~h~~~v~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~------------~~~---~~~~~~~~v~~~~~~~~~~~~~~~ 120 (315)
..|.++|+++++.+ .|+++++|+.||.|-+||++... ++. .-..|.-.|..+.|-|-.+-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999987 57899999999999999998643 110 112355678999999988888899
Q ss_pred ecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC---CCEEEEecCCCcEEEEEcccceeeeeec
Q 021247 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD---GRRIACGSMDGTISVFDVTRAKFLHHLE 197 (315)
Q Consensus 121 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~s~dg~i~i~d~~~~~~~~~~~ 197 (315)
++-|.++++||..+.+....++.+.. |.+-+++|- .-++|+|+.+-.|++.|+..+.....+.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~--------------VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGK--------------VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred ccccceEEEeecccceeeEEeecCce--------------eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 99999999999999887777655432 556666662 2356788889999999999999999999
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-ee--------------EEEeecccccEEEEEEcCCCCeEEEEe
Q 021247 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SL--------------VTAMSGHASWVLSVDASPDGAAITTGS 262 (315)
Q Consensus 198 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~--------------~~~~~~~~~~i~~~~~~~~~~~l~s~~ 262 (315)
+|...|.++.|+|...-.|++|+.||.|++||++.. -+ ++.-..|.+.++.++|..++.++++.+
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 999999999999988889999999999999998743 11 112235889999999999999999999
Q ss_pred CCCcEEEEecCccc
Q 021247 263 SDRTVKLWDLNMRA 276 (315)
Q Consensus 263 ~d~~i~iwd~~~~~ 276 (315)
.|.++++|+...|+
T Consensus 266 td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 266 TDDRIRVWNMESGR 279 (397)
T ss_pred CccceEEeecccCc
Confidence 99999999987654
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=209.21 Aligned_cols=236 Identities=25% Similarity=0.375 Sum_probs=208.1
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
.+|...|.++.--... -.+++|+.|..+-+|..........+.+|..+|.++.|+++..+|++|+.+|+|++||++
T Consensus 25 ~~hsaav~~lk~~~s~----r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSS----RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhceeeeeccc----eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 3688888888763222 369999999999999887766666789999999999999999999999999999999999
Q ss_pred CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG 170 (315)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (315)
....+.++.+|...+..+.|+|.+.++ ++|+.|..+++||++...+...+.. |...+..+.|+|+|
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~-a~gStdtd~~iwD~Rk~Gc~~~~~s-------------~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFF-ASGSTDTDLKIWDIRKKGCSHTYKS-------------HTRVVDVLRLSPDG 166 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEe-ccccccccceehhhhccCceeeecC-------------CcceeEEEeecCCC
Confidence 999999999999999999999998866 7889999999999997666665532 44458899999999
Q ss_pred CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEE
Q 021247 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVD 250 (315)
Q Consensus 171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 250 (315)
+++++|+.|..+++||+..++....+..|+..+..+.|+| ..-++.+|+.|+++++||+++.+.+.........|.++.
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~ 245 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA 245 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee
Confidence 9999999999999999999999999999999999999998 556889999999999999999888888877788999999
Q ss_pred EcCCCCeEEEEeCCC
Q 021247 251 ASPDGAAITTGSSDR 265 (315)
Q Consensus 251 ~~~~~~~l~s~~~d~ 265 (315)
|+|++..+++|....
T Consensus 246 fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNPDGKIVLSGEQIS 260 (825)
T ss_pred ecCCceeeecCchhh
Confidence 999999888877654
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=8.2e-27 Score=190.65 Aligned_cols=281 Identities=19% Similarity=0.256 Sum_probs=226.0
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc---ceeeccc--cccceEEEEeCCCCCEEEEeeCCCeEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNTG--HCLGVVSVAAHPSGIIAASASLDSFVR 85 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~---~~~~~~~--h~~~v~~~~~~~~g~~l~s~~~d~~i~ 85 (315)
.+|.+-|.+++-+.... .++||+. |.|++||..... ....++. -...+.++...|+|..|++|+.-.++-
T Consensus 416 L~HGEvVcAvtIS~~tr----hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTR----HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcc----eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 48988999999887665 4888875 789999975432 1222222 345789999999999999999999999
Q ss_pred EEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 86 VFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 86 ~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
|||+....... .+......+..++.+|+.+ +++++..||.|.|||+.+...+..+. +|.+...|
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~Vrqfq-------------GhtDGasc 556 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQ-------------GHTDGASC 556 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeeccc-------------CCCCCcee
Confidence 99998765432 2333335678899999977 56778899999999999876665553 45566899
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 243 (315)
|.++++|..|.+|+.|++|+.||+++++.+.... ....|.++..+| .+.+++.|-.++.+.+-.... ...+++..|.
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-p~kyqlhlhe 633 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHE 633 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccCcEEEEecCC-ccceeecccc
Confidence 9999999999999999999999999887654321 245788888898 567999999999888876543 3456677789
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..|.++.|.+-|+++++.+.|+-+..|....+..+.+.. ....|.++.+|.|.++|++|+.|+.-.||.+
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999999999999888776543 4568999999999999999999999998875
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=196.67 Aligned_cols=287 Identities=22% Similarity=0.334 Sum_probs=229.6
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC----cceeeccccccceEEEEeC-CCCCEEEEeeCCCe
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM----QLERTNTGHCLGVVSVAAH-PSGIIAASASLDSF 83 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~----~~~~~~~~h~~~v~~~~~~-~~g~~l~s~~~d~~ 83 (315)
+.++|...|....|.|..+ +++|++.|+.+++|-.+++ ..++...||..|..++.|. .+|..+.+++.|++
T Consensus 283 ~~nah~~sv~~~~fl~~ep----Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEP----VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeccccCCcccceecCCCc----eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 3469999999999998654 7999999999999966532 4566778999999999997 67899999999998
Q ss_pred EEEEECCCCc----------------------------eeEEe-------------------------------------
Q 021247 84 VRVFDVDTNA----------------------------SIATL------------------------------------- 98 (315)
Q Consensus 84 i~~w~~~~~~----------------------------~~~~~------------------------------------- 98 (315)
.+.+++.... .+..+
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 8877652110 00000
Q ss_pred -eC-----CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCE
Q 021247 99 -EA-----SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRR 172 (315)
Q Consensus 99 -~~-----~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 172 (315)
+. ....+.+++.++-|+ +++.|...|.|-+|++.++-...++. ....|+..|++++...-++.
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----------~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----------DSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred ecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc----------cCccccCceeEEEecCCCce
Confidence 00 113466777777777 45668889999999998765554442 12356777999999998999
Q ss_pred EEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247 173 IACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252 (315)
Q Consensus 173 l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 252 (315)
+++++.+|-+++||..+...+..+.-. .++..+..+. ...+++.+.+|-.|.++|..+.+.++.+.+|.+.|++++||
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccC-CCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 999999999999999887777666532 3556666665 45688888999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-CcEEEee
Q 021247 253 PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISLYE 313 (315)
Q Consensus 253 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~ 313 (315)
|+|++|++++.|++||+||+.++..+..+.- ..+++++.|||+|.+||++-.| .-|.+|.
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999999999988876643 4688899999999999999998 7899984
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=196.36 Aligned_cols=243 Identities=23% Similarity=0.374 Sum_probs=201.2
Q ss_pred CCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--EeeCCcccEEE-EEECCCCCeEEEEecCCC
Q 021247 49 DMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TLEASPSEVWQ-MQFDPKGTTLAVAGGGSA 125 (315)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~~~~~~~d~ 125 (315)
..++...+.||...|..+.+.+.. .++++|.||++++|+...++-.. .+..+.+-+.. ++|-+..+-.++.|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356677888999999888876544 78899999999999987766543 45556665555 777665554567899999
Q ss_pred eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEE
Q 021247 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS 205 (315)
Q Consensus 126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 205 (315)
++.+|...+.+++..+ .+|+..|.++....++. +++||.|.++++|-. ++....+.+|+.+|++
T Consensus 82 ~i~v~~~~~~~P~~~L-------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTL-------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred eEEEEecCCCCchhhh-------------hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 9999998776655444 35666688888777776 999999999999975 4555668999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc
Q 021247 206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285 (315)
Q Consensus 206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 285 (315)
+++.|.+ .+++|+.|.+|++|.. ++.++.+.+|.+.|..+++-|++. +++++.||.|+.|++ .++.+.++.+|+
T Consensus 146 v~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ght 219 (745)
T KOG0301|consen 146 VASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHT 219 (745)
T ss_pred eeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccc
Confidence 9999844 8999999999999965 678888999999999999988754 789999999999999 578888999999
Q ss_pred cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.-+.+++..+++..++++|+|++++||+-
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 99999998888889999999999999984
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=6.8e-25 Score=182.32 Aligned_cols=260 Identities=18% Similarity=0.253 Sum_probs=190.2
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEE-EeeCCCeEEEEECCCCc
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVFDVDTNA 93 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~~~~ 93 (315)
..+.+++|+|.+.. ++++++.++.|++|+..+.+....+..+.. +..+.++|+++.++ +++.|+.+++||+.+.+
T Consensus 31 ~~~~~l~~~~dg~~---l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 31 QRPRGITLSKDGKL---LYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCceEECCCCCE---EEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 34678999987642 456778899999999988777665554433 56788999998665 45668999999999887
Q ss_pred eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247 94 SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI 173 (315)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 173 (315)
.+..+... ..+..++|+|++..++++......+.+||.++.+........ ..+..++|+|++++|
T Consensus 107 ~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 107 VLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--------------QRPRFAEFTADGKEL 171 (300)
T ss_pred EEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--------------CCccEEEECCCCCEE
Confidence 77666532 346789999999877655444456788898876655433211 124578999999988
Q ss_pred EE-ecCCCcEEEEEcccceeeeeecCCc-------cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247 174 AC-GSMDGTISVFDVTRAKFLHHLEGHF-------MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245 (315)
Q Consensus 174 ~~-~s~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 245 (315)
++ +..++.|++||+.+++.+..+..+. .....+.|+|++...+++.+.++.+.+||.++++.+.... +...
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 54 4568999999999887765543221 1234678998555445555667789999998877765543 3456
Q ss_pred EEEEEEcCCCCeEEEE-eCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247 246 VLSVDASPDGAAITTG-SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP 295 (315)
Q Consensus 246 i~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 295 (315)
+.+++|+|+++.|+++ +.++.|++||++.++.+.++... ...++++++|
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 8899999999998876 56899999999999988888654 5668998876
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=185.90 Aligned_cols=245 Identities=21% Similarity=0.288 Sum_probs=202.4
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE----E---e-----------eCCcccEEEEEECCCCC
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA----T---L-----------EASPSEVWQMQFDPKGT 115 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~----~---~-----------~~~~~~v~~~~~~~~~~ 115 (315)
.....|..++.++.++|+..+.++++.|++|.-|++.++.... . + +.|...+.+++.+++++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4456799999999999999999999999999999998876331 1 0 25667899999999999
Q ss_pred eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee
Q 021247 116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH 195 (315)
Q Consensus 116 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~ 195 (315)
++ ++|+.|..|.|||.++.+.+..+ ..|...|.+++|-..-..+++++.|+.+++|++.....+.+
T Consensus 216 yl-atgg~d~~v~Iw~~~t~ehv~~~-------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 216 YL-ATGGRDRHVQIWDCDTLEHVKVF-------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred EE-EecCCCceEEEecCcccchhhcc-------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 76 67889999999999987776554 34666799999998888999999999999999999999999
Q ss_pred ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247 196 LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275 (315)
Q Consensus 196 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 275 (315)
+.+|...|.++.-.. ..+.+-.|+.|+++++|++.... ...+.+|.+.+-+++|-.+ ..+++|+.||.|.+|++..+
T Consensus 282 lyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HhCCccceeeechhc-ccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 999999999988764 44555566699999999995433 3345678888999998755 46899999999999999888
Q ss_pred ceehccc-cc-----------ccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 276 AAMQSMT-NH-----------TDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 276 ~~~~~~~-~~-----------~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+++.+.. .| .-+|++++..|...++++|+.+|.||||..+
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 7765432 12 1278999999999999999999999999863
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=186.53 Aligned_cols=248 Identities=21% Similarity=0.339 Sum_probs=192.2
Q ss_pred eEEEEEeec---CCCCCcEEEEeeCCCcEEEEcCCCCcc-------e--------e------eccccccceEEEEeCCC-
Q 021247 17 VWAVTWVPA---TETRPALLLTGSLDETVKLWRPDDMQL-------E--------R------TNTGHCLGVVSVAAHPS- 71 (315)
Q Consensus 17 v~~v~~~~~---~~~~~~~l~sgs~d~~v~~w~~~~~~~-------~--------~------~~~~h~~~v~~~~~~~~- 71 (315)
-.|++|... .....+++|.|..|..|.|||++-... . + ...+|+.+|.+++++..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 357777765 223346999999999999999753211 0 0 01369999999999865
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCC
Q 021247 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLK 150 (315)
Q Consensus 72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~ 150 (315)
.+.|+|||.|.+|++||+.++++..++..|..+|.++.|+|....++++|+.|+++.+.|.|... .-..+.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-------- 327 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-------- 327 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--------
Confidence 47999999999999999999999999999999999999999999999999999999999998411 111111
Q ss_pred CCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021247 151 PTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 228 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 228 (315)
....|-.++|.|.. ..+++++.||.++-+|+|.. +++..++.|..+|.++.+++..+.++++++.|+.+++|
T Consensus 328 ------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 328 ------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred ------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 12237889999864 47788999999999999865 88899999999999999999899999999999999999
Q ss_pred eCCCCee--EEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCcccee
Q 021247 229 DAEGKSL--VTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRAAM 278 (315)
Q Consensus 229 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~ 278 (315)
+...... +....-..+...+.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9764322 211111122345666777643 6788888889999999876544
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.4e-25 Score=183.40 Aligned_cols=275 Identities=20% Similarity=0.324 Sum_probs=213.1
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc-
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA- 93 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~- 93 (315)
.-|.||+|.+.+. ++||.++|.|.||+..+.+..++...|.++|.+++.-.+|.++- |+.|+.|-.||-+-.+
T Consensus 247 k~Vl~v~F~engd-----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~ 320 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-----VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL 320 (626)
T ss_pred eEEEEEEEcCCCC-----EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccccc
Confidence 5799999998776 89999999999999998888888779999999999999997765 9999999999832110
Q ss_pred ----------eeE-----------------------------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247 94 ----------SIA-----------------------------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134 (315)
Q Consensus 94 ----------~~~-----------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 134 (315)
.++ ....|.+..|.++.+|+.+.+ ++++.|+.+++|+ .
T Consensus 321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~-~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQL-LTCGQDKHVRLWN--D 397 (626)
T ss_pred ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhe-eeccCcceEEEcc--C
Confidence 000 113456678999999997754 6888999999999 3
Q ss_pred cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCc
Q 021247 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR 214 (315)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 214 (315)
.++..+..+ .++..++.|+|.| .++.|+..|...+.|.++...+..-.. +.++..++|+| ++.
T Consensus 398 ~k~~wt~~~--------------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~ 460 (626)
T KOG2106|consen 398 HKLEWTKII--------------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGA 460 (626)
T ss_pred CceeEEEEe--------------cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCC
Confidence 344443322 2236799999999 999999999999999998655544443 88999999999 678
Q ss_pred EEEEEeCCCeEEEEeCCC-CeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce---ehcc--------
Q 021247 215 VLFSASDDTHVHMYDAEG-KSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA---MQSM-------- 281 (315)
Q Consensus 215 ~l~s~~~d~~i~~wd~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~-------- 281 (315)
+|+.|+.|+.|++|.... +...... ..+..+|+.++|++|+++|.+-+.|-.|..|.-...+. .+.+
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCT 540 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEE
Confidence 999999999999998753 2222222 33458899999999999999999999999994322111 1110
Q ss_pred -------cccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 282 -------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 282 -------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..|...+..++-+.+...+|++.+.|+|+||.+.
T Consensus 541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 541 LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 1244456677777778888999999999999873
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=195.28 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=198.3
Q ss_pred cccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc
Q 021247 57 TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW 135 (315)
Q Consensus 57 ~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~ 135 (315)
.+|+.+.+.+++.|+|..+.+++.||.|++|+.... ....++..+...+.+++.. ++ .+++|+.+++|.+|....+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~-~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN-HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--cc-ceEEeeccceEEEeeCCCC
Confidence 579999999999999999999999999999998776 4455555466667776654 33 4568899999999987664
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV 215 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 215 (315)
+.-..+ ....-++++++++-+|++++.|+.|-.|++-++........+++|..+|.++.|+| ++.+
T Consensus 87 ~~~~iL-------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~f 152 (933)
T KOG1274|consen 87 EEDTIL-------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNF 152 (933)
T ss_pred Ccccee-------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCE
Confidence 432111 11123488999999999999999999999999998888899999999999999999 7889
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEeec-------c-cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc--cc
Q 021247 216 LFSASDDTHVHMYDAEGKSLVTAMSG-------H-ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN--HT 285 (315)
Q Consensus 216 l~s~~~d~~i~~wd~~~~~~~~~~~~-------~-~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~ 285 (315)
|++.+-||.+++||++.+.+...+.+ . ...+..++|+|++..++..+.|+.|++|+.+.++....+.. +.
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence 99999999999999998876655432 1 34467789999988899999999999999998877655432 33
Q ss_pred cceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..+..+.|+|+|.|||+++.||.|.|||+.
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 448899999999999999999999999974
No 132
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.1e-25 Score=190.33 Aligned_cols=294 Identities=24% Similarity=0.338 Sum_probs=213.6
Q ss_pred chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDS 82 (315)
Q Consensus 5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~ 82 (315)
+....+.+|..+|+|+.|.|... ..+.+++|+.|+.|.+|.+....+ ...+.+|...+.++.- .-....+...|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~-~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a--~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSE-IVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA--RSSVMTCKAADG 121 (764)
T ss_pred eeEEeccCCccceEEEEEccccc-ccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe--eeeEEEeeccCc
Confidence 44556789999999999999876 677999999999999999874433 3456667666665543 223333347899
Q ss_pred eEEEEECCCCc--eeEEeeCCccc--EEEEEECC-CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247 83 FVRVFDVDTNA--SIATLEASPSE--VWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 83 ~i~~w~~~~~~--~~~~~~~~~~~--v~~~~~~~-~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
++++||.+..+ +...+...... ..+++..| .+..+++.|+.+..|.++.-...+..... ...+|
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~-----------el~GH 190 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA-----------ELEGH 190 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE-----------Eeecc
Confidence 99999996554 22222222222 23445555 45566677777788888865533222222 23478
Q ss_pred CcceEEEEECCCCC---EEEEecCCCcEEEEEcccce---------------------eeee----------ecCCccce
Q 021247 158 KKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAK---------------------FLHH----------LEGHFMPV 203 (315)
Q Consensus 158 ~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~---------------------~~~~----------~~~~~~~v 203 (315)
.++|.+++|...+. +|+++|+|..|+||.+.-+. .... +.+|..-|
T Consensus 191 ~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV 270 (764)
T KOG1063|consen 191 TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV 270 (764)
T ss_pred chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence 89999999987443 77899999999999864222 1111 23899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-
Q 021247 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-------LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR- 275 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~- 275 (315)
.++.|+| ....|++++.|.++.+|.....+ .+..+.+..+...+..|+|++..+++-+.-|-.++|.....
T Consensus 271 ~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 271 YSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred EEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 9999999 45689999999999999876541 12233344566889999999999999999999999983332
Q ss_pred --ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 276 --AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 276 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
.....+.+|.+.|..++|+|.|.+|+++|.|.+-|||-
T Consensus 350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred ceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence 33455789999999999999999999999999999984
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=183.92 Aligned_cols=289 Identities=19% Similarity=0.266 Sum_probs=212.4
Q ss_pred hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc----ceeeccccccceEEEEeCCCC-CEEEEeeCC
Q 021247 7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ----LERTNTGHCLGVVSVAAHPSG-IIAASASLD 81 (315)
Q Consensus 7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~----~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d 81 (315)
..+++-|++.|++++|.|..+ ..++++|..-|.|-+||+.+.+ -...+..|..+|.++.|+|.. ..+++.+.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 446778999999999999875 3589999999999999985322 234466799999999999976 688899999
Q ss_pred CeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCC
Q 021247 82 SFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (315)
|+||+=|++.+.... ..+........++|+.....+++ ++.-|...+||+++.+. ...+. .|+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~-------------lh~ 322 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLR-------------LHK 322 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhh-------------hhh
Confidence 999999998865432 23223344567777776665544 55556999999987543 22222 244
Q ss_pred cceEEEEECCCC-CEEEEecCCCcEEEEEcccceee----eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--
Q 021247 159 KFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFL----HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-- 231 (315)
Q Consensus 159 ~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-- 231 (315)
..|.+++++|.. .+|++++.|++.+|||++..+.. -....|..+|.+..|+|.++. |++-+.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCI 401 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccc
Confidence 469999999965 46789999999999999855432 334568999999999998777 8899999999999984
Q ss_pred --CCeeEEEeeccc----cc--EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccccc-ceEE-EEEeeCCCEE-
Q 021247 232 --GKSLVTAMSGHA----SW--VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD-QVWG-VSFRPLGGRV- 300 (315)
Q Consensus 232 --~~~~~~~~~~~~----~~--i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l- 300 (315)
.-.....+ .|+ -+ +....|.|+..++++|-.-..|-|+|-+.++.+..+-.... .|.+ ..|+|-+..+
T Consensus 402 sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccccee
Confidence 22222222 232 22 34567999999999999999999999988876655433222 3444 4899987745
Q ss_pred EEEeCCCcEEEee
Q 021247 301 VSVSDDKSISLYE 313 (315)
Q Consensus 301 ~s~~~d~~i~i~~ 313 (315)
+.++..|.|.||.
T Consensus 481 aG~~s~Gki~vft 493 (498)
T KOG4328|consen 481 AGGNSSGKIYVFT 493 (498)
T ss_pred ccCCccceEEEEe
Confidence 4555668998884
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.7e-24 Score=174.60 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=220.4
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec---cc-cccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN---TG-HCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~---~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
.+.|...+|.|..++ ++++.+ -+.+.+|+++...+.+.. .+ .+..|.|++|.++|.. ++|..+|.|.+|+.
T Consensus 200 ne~v~~a~FHPtd~n---liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPN---LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSK 274 (626)
T ss_pred cceEEEEEeccCCCc---EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeC
Confidence 467889999997753 566655 478999999887765542 22 2367999999999865 67999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC-----------------
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT----------------- 152 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~----------------- 152 (315)
.+.+..+....|++.|.+++.-.+|.. ++|+.|+.|..|| ...+.++...+|...+....
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~Gtl--lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTL--LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccE--eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 888777666689999999999888763 4699999999999 44455555555443222110
Q ss_pred -----------ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC
Q 021247 153 -----------DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD 221 (315)
Q Consensus 153 -----------~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 221 (315)
....|.+....++.+|+.+++++++.|+.+++|+ ..++.-.. .-..+..++.|+|.+ .++.|..
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~ 426 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG--VVAVGTA 426 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc--eEEEeec
Confidence 0112334456789999999999999999999999 23322211 123688999999965 8999999
Q ss_pred CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-ceehccc-ccccceEEEEEeeCCCE
Q 021247 222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMT-NHTDQVWGVSFRPLGGR 299 (315)
Q Consensus 222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~ 299 (315)
.|...+.|.++...+..-.. +.++..+.++|+|.+||.|+.|+.|++|.+... ....... .+..+|+.+.||+|+++
T Consensus 427 ~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred cceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 99999999998766655555 888999999999999999999999999988653 3333332 23478999999999999
Q ss_pred EEEEeCCCcEEEeec
Q 021247 300 VVSVSDDKSISLYEY 314 (315)
Q Consensus 300 l~s~~~d~~i~i~~~ 314 (315)
|.+-+.|-.|..|+-
T Consensus 506 ~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKP 520 (626)
T ss_pred EEeccCceEEEEEcc
Confidence 999999999999953
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.7e-25 Score=172.53 Aligned_cols=233 Identities=18% Similarity=0.263 Sum_probs=184.1
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
..-.|..++.+++|.+.. -+++|+.||.|+.+|..+... ..+..|..++.++...+....+++|++|++|++||
T Consensus 49 ~~~~~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD 122 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADES-----TIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD 122 (323)
T ss_pred hheecCCceeeeeccCCc-----eEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence 345789999999999854 389999999999999977654 44567999999999999888999999999999999
Q ss_pred CCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 89 VDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
........+++.. ..|.++... ++. ++.|..+..+.+||+++....... ..+..+..++++++.|
T Consensus 123 ~R~~~~~~~~d~~-kkVy~~~v~--g~~-LvVg~~~r~v~iyDLRn~~~~~q~-----------reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 123 PRNKVVVGTFDQG-KKVYCMDVS--GNR-LVVGTSDRKVLIYDLRNLDEPFQR-----------RESSLKYQTRCVALVP 187 (323)
T ss_pred ccccccccccccC-ceEEEEecc--CCE-EEEeecCceEEEEEcccccchhhh-----------ccccceeEEEEEEEec
Confidence 9876555555543 478888775 344 456778999999999975433211 1123456699999999
Q ss_pred CCCEEEEecCCCcEEEEEcccc----eeeeeecCCc---------cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 021247 169 DGRRIACGSMDGTISVFDVTRA----KFLHHLEGHF---------MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL 235 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 235 (315)
++.-+++++-||+|.+=.+... .....++.|. .||++++|+|. -..|++|+.||.|.+||+..++.
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEccCcchhh
Confidence 9888999999999877544333 2223334442 38999999995 56899999999999999999988
Q ss_pred EEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247 236 VTAMSGHASWVLSVDASPDGAAITTGSS 263 (315)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 263 (315)
+.++..-...|.+++|+.+|..||.++.
T Consensus 267 l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 267 LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 8888777778999999999999999875
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=9.8e-26 Score=175.23 Aligned_cols=293 Identities=18% Similarity=0.283 Sum_probs=219.5
Q ss_pred hhhhccccceEEEEEeec-CCCCCcEEEEeeCCCcEEEEcCCCCc---ceee-cc-ccccceEEEEeCCC----CCEEEE
Q 021247 8 SVENAHEESVWAVTWVPA-TETRPALLLTGSLDETVKLWRPDDMQ---LERT-NT-GHCLGVVSVAAHPS----GIIAAS 77 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~-~~~~~~~l~sgs~d~~v~~w~~~~~~---~~~~-~~-~h~~~v~~~~~~~~----g~~l~s 77 (315)
.+...|..++++++|.+. ....+..+++.+. ..+.+|+..... +.+. .. .|......+++..+ ..+++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 467899999999999964 3444556666664 567778754322 1221 12 25556666666542 358888
Q ss_pred eeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247 78 ASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 78 ~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
++.-|.||+.|+.++++...+.+|..+|..+.++|....++++++.|..|++|++++..++..+-. ..+|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG----------~egH 180 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG----------VEGH 180 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc----------cccc
Confidence 999999999999999999999999999999999999988999999999999999999988887732 2467
Q ss_pred CcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee----------------------------ecCCccceEEEEEc
Q 021247 158 KKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH----------------------------LEGHFMPVRSLVYS 209 (315)
Q Consensus 158 ~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~v~~~~~~ 209 (315)
.+.|.++.|+++|.+|++++.|.++++|++...+.... -..|...|.++.|.
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 88899999999999999999999999999873322111 11344455555554
Q ss_pred CCCCcEEEEEeCCCeEEEEeC-CCC-------------eeEEEeeccc--ccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 210 PVDPRVLFSASDDTHVHMYDA-EGK-------------SLVTAMSGHA--SWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 210 ~~~~~~l~s~~~d~~i~~wd~-~~~-------------~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
+.++++=+-++.|..|.. +-+ +.+..+.-.. .|....+++|-+++||.|...|.|.+||++
T Consensus 261 ---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 261 ---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred ---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 358889899999999986 211 1222232223 344456677888999999999999999998
Q ss_pred ccceeh--cccc--cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 274 MRAAMQ--SMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 274 ~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..++.. ++.. -...|...+||.||..|+..++|++|.-||.
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 876532 1211 1346889999999999999999999999985
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-24 Score=188.82 Aligned_cols=273 Identities=18% Similarity=0.262 Sum_probs=213.0
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
.+|+..-+.|+|-|+++ .|++++.||.|++|+.... +....+.-+...|.+++. .+..|++++.+++|.++.+
T Consensus 10 yaht~G~t~i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE----FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCC----EEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 58999999999999886 7999999999999986544 333333336667777765 4459999999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD 169 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 169 (315)
..+..-..+....-++..++++.+|+.+ +.|++|-.|++-++........+ .+|+.+|.++.|+|+
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~i-aagsdD~~vK~~~~~D~s~~~~l-------------rgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMI-AAGSDDTAVKLLNLDDSSQEKVL-------------RGHDAPVLQLSYDPK 149 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEE-EeecCceeEEEEeccccchheee-------------cccCCceeeeeEcCC
Confidence 9887655555566788999999998865 56888999999988765444333 346677999999999
Q ss_pred CCEEEEecCCCcEEEEEcccceeeeeecC-------C-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247 170 GRRIACGSMDGTISVFDVTRAKFLHHLEG-------H-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241 (315)
Q Consensus 170 ~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 241 (315)
+++||+.+.||.|++||+..+.....+.+ . ...+..++|+|.+ ..++....|+.|++|+..+.+....+..
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc
Confidence 99999999999999999988776555432 1 3456778999954 4667777889999999998877666543
Q ss_pred --ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247 242 --HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS 308 (315)
Q Consensus 242 --~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 308 (315)
+...+..+.|+|.|+|||+++.||.|.|||.++.+. ......|.+++|.|+.+.+-....-|+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccc
Confidence 445589999999999999999999999999987221 223468999999999876654444443
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=181.16 Aligned_cols=238 Identities=18% Similarity=0.295 Sum_probs=191.6
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC--
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT-- 91 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~-- 91 (315)
.++|.+++-+|.+. +++.|.-.|.+++|.+.++.++..+.+|-..|+++.|+.||.++++||.||.|++|.+.+
T Consensus 81 Pg~v~al~s~n~G~----~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGY----FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCce----EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 45799998888764 566665999999999999999999999999999999999999999999999999998743
Q ss_pred -------CceeEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 92 -------NASIATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 92 -------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
-+.+..+..|.-+|.++...+.+ +..+++.+.|.++++||+..+.++.++..|.. +.+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s--------------i~a 222 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS--------------IKA 222 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc--------------cee
Confidence 23556777888899999887763 34567889999999999999999988876654 889
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA 243 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 243 (315)
++.+|-++.+++|+.+|.|.+.++..... ....+. .+.++. .+.....+.+|.
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~------~~~~v~--------------------~k~~~~-~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSG------QSAGVN--------------------QKGRHE-ENTQINVLVGHE 275 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCc------cccccc--------------------cccccc-ccceeeeecccc
Confidence 99999999999999999999988743221 111111 111111 122334556776
Q ss_pred c--cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247 244 S--WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 244 ~--~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
+ .|++++++-||.+|++|+.||+|+|||..++..++++..-.++|+.+.+.|-
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 6 8999999999999999999999999999999999888766789999998664
No 139
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.4e-25 Score=170.40 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=185.7
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCC--EEEEeeCCCeEE
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI--IAASASLDSFVR 85 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~~~d~~i~ 85 (315)
..+..|+.+|.+++|+.++. .+++|+.|+.+++||+..++. .....|..+|..+.|-+... .|++|++|++||
T Consensus 66 ka~~~~~~PvL~v~Wsddgs----kVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGS----KVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred hhhhccCCCeEEEEEccCCc----eEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEeccccccee
Confidence 45678999999999999885 599999999999999998865 45567999999999987665 899999999999
Q ss_pred EEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 86 VFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
.||.+....+.++.. ++.++++..-. .+++.+..++.|.+|++++...... ...+..+-.++|++
T Consensus 141 fWD~R~~~pv~t~~L-PeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k-----------~~~SpLk~Q~R~va 205 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQL-PERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFK-----------RIESPLKWQTRCVA 205 (347)
T ss_pred ecccCCCCeeeeeec-cceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhh-----------hhcCcccceeeEEE
Confidence 999998888877764 56677665532 2667778899999999975322111 11122344589999
Q ss_pred ECCCCCEEEEecCCCcEEEEEcccc--eeeeeecCCc---------cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEGHF---------MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS 234 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 234 (315)
..++....+.|+.+|++.+..+..+ +.-..++.|. ..|++++|+| .-..|++++.||+..+||.+.+.
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhh
Confidence 9999888899999999999887654 2223334443 3678999999 45589999999999999999888
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEE
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTG 261 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~ 261 (315)
.++....|..+|++..|+.+|.+++-+
T Consensus 285 kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 285 KLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred hhhccCcCCCccceeEecCCCCEEEEE
Confidence 888888999999999999999987654
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-24 Score=167.20 Aligned_cols=267 Identities=17% Similarity=0.239 Sum_probs=186.0
Q ss_pred EEEcCCCCcce-----eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE--Ee--eCCcccEEEEEECCC
Q 021247 43 KLWRPDDMQLE-----RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA--TL--EASPSEVWQMQFDPK 113 (315)
Q Consensus 43 ~~w~~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~--~~--~~~~~~v~~~~~~~~ 113 (315)
+-|+....... ..+++|...|++++|+.+|++|++++.|++||+|++++-.... .+ ....+....+.|.|+
T Consensus 64 ~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD 143 (420)
T KOG2096|consen 64 DQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD 143 (420)
T ss_pred hhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC
Confidence 44655444332 3468999999999999999999999999999999998643211 11 111235678899999
Q ss_pred CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee
Q 021247 114 GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL 193 (315)
Q Consensus 114 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~ 193 (315)
-+.++++.....++++|-+...+. ..+..+.-..-.......|+-.+..+-....+.+|++++.|..|.+|++. |+.+
T Consensus 144 c~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 144 CKSVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred cceEEEEEccCCEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 988888887778999997643211 11111000000000011233446667777788999999999999999998 8888
Q ss_pred eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCCe-----eEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247 194 HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA---EGKS-----LVTAMSGHASWVLSVDASPDGAAITTGSSDR 265 (315)
Q Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~---~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 265 (315)
..+......-...+.+| +++++++++----+++|+. +.++ .+-.+.+|...|..++|+|+.+.++|.+.||
T Consensus 222 ~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 88776666666778898 7889999998888999985 2332 3346789999999999999999999999999
Q ss_pred cEEEEecCccce-------ehccc--cc--ccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 266 TVKLWDLNMRAA-------MQSMT--NH--TDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 266 ~i~iwd~~~~~~-------~~~~~--~~--~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
++++||.+-+-. +++.. .| ....-.++++|.|..|+ .+...++++|.
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~ 358 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFA 358 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEE
Confidence 999999864321 22221 11 22333799999987554 44445566653
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.2e-26 Score=202.78 Aligned_cols=251 Identities=22% Similarity=0.387 Sum_probs=206.4
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC------cceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM------QLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVF 87 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~------~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w 87 (315)
...+.++|.+.+.....+|+.|..||.|.+|++... .+......|+++|..+.|++.. +++++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 467899999988777788999999999999997642 2344567899999999999965 599999999999999
Q ss_pred ECCCCceeEEe--eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 88 DVDTNASIATL--EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 88 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
|++..+...+. ....+.|.+++|+-+-..++++++.++.+.|||+|..+.+-.+... .....+..+.
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-----------~~~~~~S~l~ 213 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-----------PGRMHCSVLA 213 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-----------CCccceeeee
Confidence 99986544333 2245789999999888889999999999999999986655443221 1224478999
Q ss_pred ECCCC-CEEEEecCCC---cEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247 166 WSPDG-RRIACGSMDG---TISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 166 ~~~~~-~~l~~~s~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 240 (315)
|+|++ ..+++++.|. .|.+||+|.. ..++.+++|...|.++.|++.++++|++++.|+.|.+|+.++++.+..+.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 99975 3566665543 4999999754 45677789999999999999999999999999999999999999999998
Q ss_pred cccccEEEEEEcCCCC-eEEEEeCCCcEEEEecCccc
Q 021247 241 GHASWVLSVDASPDGA-AITTGSSDRTVKLWDLNMRA 276 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~ 276 (315)
....|+..+.|.|... .++.++-||.|.|+.+....
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999999999655 88999999999999987543
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-26 Score=195.99 Aligned_cols=234 Identities=20% Similarity=0.310 Sum_probs=188.4
Q ss_pred eEEEEeC-CCCCEEEEeeCCCeEEEEECCC---CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247 63 VVSVAAH-PSGIIAASASLDSFVRVFDVDT---NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI 138 (315)
Q Consensus 63 v~~~~~~-~~g~~l~s~~~d~~i~~w~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 138 (315)
+..+.|+ -+.++|++++..|.|-+||+.. ++.+..+..|...+.++.|++...+++++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 3445555 2467999999999999999987 45556778899999999999999999999999999999999976655
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEE
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVL 216 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l 216 (315)
.++.. ....|+.+.|+| .++.|+++...|.+.+||++..+ +...+..|.++|.++.|+| +..+|
T Consensus 170 ~t~~~-------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~l 235 (839)
T KOG0269|consen 170 STFRS-------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWL 235 (839)
T ss_pred ccccc-------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCcee
Confidence 44422 234589999999 57899999999999999998654 4567789999999999999 88899
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeec-ccccEEEEEEcCCCC-eEEEEeC--CCcEEEEecCcc-ceehcccccccceEEE
Q 021247 217 FSASDDTHVHMYDAEGKSLVTAMSG-HASWVLSVDASPDGA-AITTGSS--DRTVKLWDLNMR-AAMQSMTNHTDQVWGV 291 (315)
Q Consensus 217 ~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~s~~~--d~~i~iwd~~~~-~~~~~~~~~~~~v~~~ 291 (315)
++||.|++|+|||+.+........- ...++.++.|-|..+ .|++++. |-.|+|||++.. -+..++..|.+.++.+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 9999999999999986543332222 346788999999765 4666654 778999999754 3567888999999999
Q ss_pred EEee-CCCEEEEEeCCCcEE
Q 021247 292 SFRP-LGGRVVSVSDDKSIS 310 (315)
Q Consensus 292 ~~s~-~~~~l~s~~~d~~i~ 310 (315)
+|-. +-..+.+++-|++|.
T Consensus 316 ~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eccCCCceeeEeecCccHHH
Confidence 9975 344678999999864
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2e-26 Score=204.82 Aligned_cols=283 Identities=19% Similarity=0.303 Sum_probs=218.0
Q ss_pred EEEEEeecCCCCCcEEEEe----------eCCCcEEEEcCCCCcce---eeccc--cccceEEEEeCCCCCE----EEEe
Q 021247 18 WAVTWVPATETRPALLLTG----------SLDETVKLWRPDDMQLE---RTNTG--HCLGVVSVAAHPSGII----AASA 78 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sg----------s~d~~v~~w~~~~~~~~---~~~~~--h~~~v~~~~~~~~g~~----l~s~ 78 (315)
-.++|+|++. .++++| |.+.++.||.++..... +.... -....+.|.|.+.|.. |+.|
T Consensus 10 a~~awSp~~~---~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 10 ATFAWSPASP---PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ceEEecCCCc---hhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc
Confidence 3578999873 244444 34566777765432211 11111 1235678899887754 8899
Q ss_pred eCCCeEEEEECCCC------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCC
Q 021247 79 SLDSFVRVFDVDTN------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPT 152 (315)
Q Consensus 79 ~~d~~i~~w~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (315)
..||.|-+||.... ..+.+...|.++|..+.|++....++++|+++|.|.|||+...+.-.+..
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------- 156 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------- 156 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence 99999999998762 23456678999999999999998899999999999999997532221110
Q ss_pred ccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCcc--ceEEEEEcCCCCcEEEEEeCCC---eEE
Q 021247 153 DKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFM--PVRSLVYSPVDPRVLFSASDDT---HVH 226 (315)
Q Consensus 153 ~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~---~i~ 226 (315)
.......|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..+.. .+..+.|+|++...++++++|. .|.
T Consensus 157 -~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 157 -SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred -CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 1112345899999975 56788999999999999998887777765543 4678999998888888777654 589
Q ss_pred EEeCCCC-eeEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEE
Q 021247 227 MYDAEGK-SLVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSV 303 (315)
Q Consensus 227 ~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 303 (315)
+||++.- ..++.+.+|...|.+++|.+.+ ++|+|++.|++|.+|+.++++.+..+....+.+..+.|.|... .+++.
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhh
Confidence 9998854 4566778999999999999965 8999999999999999999999999988888999999999876 67889
Q ss_pred eCCCcEEEeec
Q 021247 304 SDDKSISLYEY 314 (315)
Q Consensus 304 ~~d~~i~i~~~ 314 (315)
+-||.|.||.+
T Consensus 316 sfdgkI~I~sl 326 (1049)
T KOG0307|consen 316 SFDGKISIYSL 326 (1049)
T ss_pred eeccceeeeee
Confidence 99999999975
No 144
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=168.47 Aligned_cols=294 Identities=17% Similarity=0.186 Sum_probs=200.6
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVRVF 87 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w 87 (315)
++++|...|+++.|.-.+ .|.+|..-|.|++|.+.+....-.+. .+...|+.+..-|+ ..+.+-+.|..+-+|
T Consensus 9 vLRp~~~~v~s~~fqa~~-----rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANE-----RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred Eeccccchheehhhccch-----hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 567999999999996543 59999999999999998776555555 46778999998887 567788999999999
Q ss_pred ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC-eEEEEecCCcceeeeecCCCCCC--CCCCccCCCCcceEEE
Q 021247 88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIATLSIPRPEG--LKPTDKSSSKKFVLSV 164 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~ 164 (315)
++.....+.. |.-.++.+-|.+.. +...+... +.-.|+.+..............+ ..+.........+.+.
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EccCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 9987554332 11223344443321 11111111 22233332211111000000000 0000011122335555
Q ss_pred EECC-CCC--EEEEecCCCcEEEEEcccceee----------eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247 165 AWSP-DGR--RIACGSMDGTISVFDVTRAKFL----------HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231 (315)
Q Consensus 165 ~~~~-~~~--~l~~~s~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 231 (315)
.+.. ++. .+++|.++|.+.+||+.++..+ .....|..+|.++.+.+. ...=++|+.+.++..|.++
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeec
Confidence 5433 343 4578999999999999887332 233468899999999863 2334677788888898876
Q ss_pred CC----eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 232 GK----SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 232 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
.. +......-.+..+..+.+-||++++||+|.|++||||..++..++..+..|++.|++++|+|+-..+|++|.|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 33 22223333455688899999999999999999999999999999999999999999999999989999999999
Q ss_pred cEEEeecC
Q 021247 308 SISLYEYS 315 (315)
Q Consensus 308 ~i~i~~~~ 315 (315)
+|.+|++.
T Consensus 316 rISLWkLY 323 (323)
T KOG0322|consen 316 RISLWKLY 323 (323)
T ss_pred eEEeeecC
Confidence 99999974
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.2e-25 Score=182.08 Aligned_cols=255 Identities=20% Similarity=0.306 Sum_probs=196.9
Q ss_pred eccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247 55 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134 (315)
Q Consensus 55 ~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 134 (315)
.+.||++.|.+|+.+|.|.+|++|+.||++|+|.+.++.|+.++.. .+.|.+++|+|.+..-+++......+.+-+..-
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 3579999999999999999999999999999999999999998764 458999999998764433333333455555432
Q ss_pred cce---------eeeecCCCCCCCC---------------CCccCCCCcceEEEEECCCCCEEEEecC---CCcEEEEEc
Q 021247 135 WNL---------IATLSIPRPEGLK---------------PTDKSSSKKFVLSVAWSPDGRRIACGSM---DGTISVFDV 187 (315)
Q Consensus 135 ~~~---------~~~~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~s~---dg~i~i~d~ 187 (315)
+.. +............ ......+...|+.+.|+..|.||++... ...|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 211 1111000000000 0011234455889999999999988654 346999999
Q ss_pred ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267 (315)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 267 (315)
...+...-++...+.|..+.|+|..+.++++ + -..|++||+..+.+++.+.....+|..++++|.|..|+.|+.|+.+
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM 631 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEE-e-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence 8777666666667789999999976655444 3 3479999998888888877788899999999999999999999999
Q ss_pred EEEecCcc-ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 268 KLWDLNMR-AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 268 ~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
..||+... ++.+++..|...+++|+|++.-..++++++||++.||
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999864 6788899999999999999999999999999999987
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3e-24 Score=169.81 Aligned_cols=246 Identities=22% Similarity=0.353 Sum_probs=184.9
Q ss_pred ccccccceEEEEeCCCC--CEEEEeeCCCeEEEEECCC----------------CceeEEeeCCcccEEEEEECCCCCeE
Q 021247 56 NTGHCLGVVSVAAHPSG--IIAASASLDSFVRVFDVDT----------------NASIATLEASPSEVWQMQFDPKGTTL 117 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g--~~l~s~~~d~~i~~w~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (315)
..+|.+.++.+...+.| .+.++=+..|.|+||++.. .+++.++..|...-+.++|+|-..-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 45678888888888766 4555667789999999853 13456777888889999999954444
Q ss_pred EEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEccccee--ee
Q 021247 118 AVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKF--LH 194 (315)
Q Consensus 118 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~--~~ 194 (315)
+++|.--+.|++|...++..... . .....|...|-.++|+|. ...|++||.||+|+|||++.+.. .-
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd----~------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVD----Q------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cccCccccceEeeeeccCceeec----C------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 56776678899998776543311 1 112347777999999995 56889999999999999987732 22
Q ss_pred eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEE
Q 021247 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG---KSLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLW 270 (315)
Q Consensus 195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iw 270 (315)
..+.|...|+.|.|+...+ +|++|++||+++|||++. ++.+..+.-|..+|+++.|+|. ...++++|.|..|.+|
T Consensus 297 ~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 3378999999999998555 999999999999999874 5678889999999999999996 4578999999999999
Q ss_pred ecCccce-----------ehc-----ccccc--cceEEEEEeeC-CCEEEEEeCCCcEEEe
Q 021247 271 DLNMRAA-----------MQS-----MTNHT--DQVWGVSFRPL-GGRVVSVSDDKSISLY 312 (315)
Q Consensus 271 d~~~~~~-----------~~~-----~~~~~--~~v~~~~~s~~-~~~l~s~~~d~~i~i~ 312 (315)
|+....- ++. +--|. ..+..+.|+++ ..+|++.+.||.-.+.
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 9864221 111 11242 35677899987 3588999999854433
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2e-24 Score=180.11 Aligned_cols=285 Identities=20% Similarity=0.252 Sum_probs=216.3
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCE-EEEeeCCCeEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII-AASASLDSFVRVF 87 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~-l~s~~~d~~i~~w 87 (315)
+..+|++.|.+++-.|.+. .|++||.||+|++|...++.+++... -...|.+++|+|.+.. +++++....+.+-
T Consensus 395 vyrGHtg~Vr~iSvdp~G~----wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGE----WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eEeccCCeEEEEEecCCcc----eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4689999999999999775 79999999999999999998887653 2347999999997752 2223333334444
Q ss_pred ECCCCc-------------------------------------eeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEE
Q 021247 88 DVDTNA-------------------------------------SIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVK 128 (315)
Q Consensus 88 ~~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~ 128 (315)
+..-+. -+...-.+..+|..+.||-.|.+++.+... ...|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 432110 011223356789999999999998776553 35688
Q ss_pred EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208 (315)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 208 (315)
|+++...+...-+ ...+..+..+.|+|...+|++++. ..|++||+.....+..+......|..++.
T Consensus 550 iHQLSK~~sQ~PF-------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 550 IHQLSKRKSQSPF-------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred EEecccccccCch-------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 8887643221111 122345889999999999888876 47999999887777777766778899999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc---------ccee
Q 021247 209 SPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM---------RAAM 278 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~ 278 (315)
+| .+.-|+.++.|+.+..||+.-. +..+.+.-|...++++++++.-.++++|+.||++.||.-+- --++
T Consensus 616 hp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 616 HP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred cC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 98 5667888999999999998743 45667788999999999999999999999999999985431 1245
Q ss_pred hcccccccc----eEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 279 QSMTNHTDQ----VWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 279 ~~~~~~~~~----v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+.+.+|... |..+.|+|...+|+++|+||+|++|.
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 667888755 88999999999999999999999983
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=170.12 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=189.2
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC----------------CcceeeccccccceEEEEeCCCC
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD----------------MQLERTNTGHCLGVVSVAAHPSG 72 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~----------------~~~~~~~~~h~~~v~~~~~~~~g 72 (315)
.+-+|.+.|+.+.-.+.++ ..++++.+..|.|++|+... ...+..+.+|...-..|+|+|-.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~--~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGN--EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccceeeecccCC--cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 3457889999999888764 35788889999999998532 12234556888888999999943
Q ss_pred -CEEEEeeCCCeEEEEECCCCcee---EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247 73 -IIAASASLDSFVRVFDVDTNASI---ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148 (315)
Q Consensus 73 -~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 148 (315)
-.+++|..-+.|++|...++.-. ..+..|...|..++|+|....++++|+.|++|+|||+|.+.....+.
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------ 297 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------ 297 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------
Confidence 25788988899999999887532 24556889999999999999999999999999999999864322221
Q ss_pred CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc---ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR---AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV 225 (315)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 225 (315)
...|..-|+.+.|+-.-.+||+|+.||.++|||+++ ++++..++-|..+|+++.|+|.+...+++++.|..|
T Consensus 298 -----~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 298 -----TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred -----eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 123444599999998877999999999999999975 456788899999999999999999999999999999
Q ss_pred EEEeCCCCe--------e--------EEEeecc--cccEEEEEEcCC-CCeEEEEeCCCcEEEE
Q 021247 226 HMYDAEGKS--------L--------VTAMSGH--ASWVLSVDASPD-GAAITTGSSDRTVKLW 270 (315)
Q Consensus 226 ~~wd~~~~~--------~--------~~~~~~~--~~~i~~~~~~~~-~~~l~s~~~d~~i~iw 270 (315)
.+||+.-.. . .+.+--| ...+-.+.|+++ ..++++.+.|| +.||
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999974210 0 0111123 234566788875 34777777787 4454
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.7e-23 Score=160.81 Aligned_cols=258 Identities=20% Similarity=0.298 Sum_probs=194.6
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC---CCEEEEeeCCCeEEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS---GIIAASASLDSFVRVF 87 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l~s~~~d~~i~~w 87 (315)
.+|.-.|..+.|-|... .++.++|.|.++++||..+.+....++- .+.|.+-+.+|- ..++++|..|-.||+-
T Consensus 98 ~~Hky~iss~~WyP~Dt---GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDT---GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred ccceeeeeeeEEeeecC---ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 56777999999999765 4899999999999999888765444432 234666666663 3588889999999999
Q ss_pred ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCC-CccCCCCcceEEEE
Q 021247 88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKP-TDKSSSKKFVLSVA 165 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 165 (315)
|+..+..-.++.+|.+.|.++.|+|...+++++|+.||.|++||++.. -+...+..+...-.+. .....|...+.+++
T Consensus 174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 999999999999999999999999999999999999999999999875 3344443322111111 12345667799999
Q ss_pred ECCCCCEEEEecCCCcEEEEEcccceeeeeec---CCccceEEEEEc--CCCCcEEEEEeCCCeEEEEeCCCCeeEEEee
Q 021247 166 WSPDGRRIACGSMDGTISVFDVTRAKFLHHLE---GHFMPVRSLVYS--PVDPRVLFSASDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 166 ~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 240 (315)
|..++.++++++.|..+++|+...++....-. .|+.. ..+++. ..+...++--=.++.+.++.+-.++.+..+.
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~ 332 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS 332 (397)
T ss_pred ecccchhhhhccCccceEEeecccCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCceEEEeee
Confidence 99999999999999999999998765321111 01110 111111 1122233333345789999998999999999
Q ss_pred cccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
.|...|.+..+.|+-+...+|..|+.|..|-..
T Consensus 333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cccceeeEEeecCchhhhhccccCCcccccccc
Confidence 998889999999998999999999999999764
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=162.51 Aligned_cols=277 Identities=23% Similarity=0.323 Sum_probs=203.2
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc------------eeecc-ccccceEEEEe-------CCCCCEE
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL------------ERTNT-GHCLGVVSVAA-------HPSGIIA 75 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~------------~~~~~-~h~~~v~~~~~-------~~~g~~l 75 (315)
-..++.|+|++. .|++-+.|..+.+|++..... ...+. .....|...++ .|+..++
T Consensus 51 f~kgckWSPDGS----ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSPDGS----CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhccceeCCCCc----eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 345778999886 589999999999998531100 00000 11123444444 4778899
Q ss_pred EEeeCCCeEEEEECCCCceeEEeeC--Ccc---cEEEEEECCCCCeEEEEecCCCeEEEEec-CCcceeeeecCCCCCCC
Q 021247 76 ASASLDSFVRVFDVDTNASIATLEA--SPS---EVWQMQFDPKGTTLAVAGGGSASVKLWDT-ATWNLIATLSIPRPEGL 149 (315)
Q Consensus 76 ~s~~~d~~i~~w~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~ 149 (315)
++.+.|.-|++||..+++....+.. |.+ .-.+++|+|+|.+++ ++....|+++|+ |.+.....+..
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t------ 198 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTT------ 198 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhh------
Confidence 9999999999999999987766543 222 345899999999875 367899999998 44432211110
Q ss_pred CCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC-CCeEEE
Q 021247 150 KPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD-DTHVHM 227 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~ 227 (315)
....+.+.+..|.+++|+|- ...+++|+...++-||.-...+++..+.+|.+.|+.+.|.+ +++.|++|.. |-+|..
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILC 277 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence 00112334567899999994 55899999999999998878888889999999999999999 5567777765 789999
Q ss_pred EeCCCC-eeEEEeecccc-cE--EEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEE
Q 021247 228 YDAEGK-SLVTAMSGHAS-WV--LSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVS 302 (315)
Q Consensus 228 wd~~~~-~~~~~~~~~~~-~i--~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s 302 (315)
||++.. ..+..+..|.+ .- .-.+..|.+++|++|+.||.|++||++. +.....+..|.+.++.++++|--..+++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILAT 357 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeee
Confidence 999853 44555555544 22 2356678999999999999999999987 6667778889999999999998777776
Q ss_pred EeC
Q 021247 303 VSD 305 (315)
Q Consensus 303 ~~~ 305 (315)
++.
T Consensus 358 ssG 360 (406)
T KOG2919|consen 358 SSG 360 (406)
T ss_pred ccC
Confidence 654
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.7e-24 Score=174.96 Aligned_cols=267 Identities=20% Similarity=0.257 Sum_probs=201.0
Q ss_pred EEEeeCCCcEEEEcCCCCcceeeccccc--cceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEE
Q 021247 33 LLTGSLDETVKLWRPDDMQLERTNTGHC--LGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQ 107 (315)
Q Consensus 33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~--~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~ 107 (315)
|..+|....+++||.........+..|+ .++.++.|+.... .+++.+.|..+++|...... ....-+...+.-.|
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C 84 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC 84 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence 4445556689999987655433333232 2588999988774 44566789999999865431 11111111122223
Q ss_pred EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247 108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187 (315)
Q Consensus 108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~ 187 (315)
++...... .+++|+..+.|+|||++..-....+ ..|+..|+++.++....+||+++..|.|.+..+
T Consensus 85 v~~~s~S~-y~~sgG~~~~Vkiwdl~~kl~hr~l-------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 85 VACASQSL-YEISGGQSGCVKIWDLRAKLIHRFL-------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred Hhhhhcce-eeeccCcCceeeehhhHHHHHhhhc-------------cCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 33333333 4578888999999999843222222 345677999999999999999999999999999
Q ss_pred ccceeeeeecCC-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EEeecccccEEEEEEcCC-CCeEEEEeCC
Q 021247 188 TRAKFLHHLEGH-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV-TAMSGHASWVLSVDASPD-GAAITTGSSD 264 (315)
Q Consensus 188 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~s~~~d 264 (315)
.++.....+... ...|+-+.|+|....+|.+++++|.+.+||.++...+ .....|..+...++|+|. ..+|++.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 888777666654 4567899999988888999999999999999887554 445689999999999995 5678999999
Q ss_pred CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 265 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+|.+||....+...++.. ..+...|+|+++|.+|++|...|.|..||+
T Consensus 231 kki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEec
Confidence 9999999998887777754 568999999999999999999999999986
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=5.1e-24 Score=165.75 Aligned_cols=259 Identities=21% Similarity=0.335 Sum_probs=197.6
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECC
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVD 90 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~ 90 (315)
.|++..+.++|+-+.+..+.++|.|+.=|.|++.|+..+++.+.+.+|...|+.+.++|.. +++++++.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 4899999999999888778899999999999999999999999999999999999999987 788999999999999999
Q ss_pred CCceeEEe---eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec-------------CCCCCCCCCC--
Q 021247 91 TNASIATL---EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-------------IPRPEGLKPT-- 152 (315)
Q Consensus 91 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------------~~~~~~~~~~-- 152 (315)
+..++..+ ++|.+.|.++.|++++.++ ++++.|-++++|++...+....+. +|.+....|.
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i-~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRI-ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCee-eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 99998876 5688999999999999854 788999999999998433221111 1111111111
Q ss_pred ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-ce-------------eeeeecCCccceEEEEEcCC-CCcEEE
Q 021247 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-AK-------------FLHHLEGHFMPVRSLVYSPV-DPRVLF 217 (315)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-~~-------------~~~~~~~~~~~v~~~~~~~~-~~~~l~ 217 (315)
...-|..+|-|+.|- |+++++-+-++.|..|.... ++ .+..+.-....|+-+.|.-+ ..+.|+
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 223456667677765 57899988899999998621 11 11222333445666655421 456899
Q ss_pred EEeCCCeEEEEeCCCCeeEE--Eee--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 218 SASDDTHVHMYDAEGKSLVT--AMS--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 218 s~~~d~~i~~wd~~~~~~~~--~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
.|...|.+.+||++...... ++. .....|...+|+.++.+|+..+.|++|.-||.-
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999998654421 121 224568899999999999999999999988853
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=8.9e-24 Score=170.96 Aligned_cols=247 Identities=19% Similarity=0.251 Sum_probs=192.8
Q ss_pred ccccccceEEEEeCCCC--CEEEEeeCCCeEEEEECCCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247 56 NTGHCLGVVSVAAHPSG--IIAASASLDSFVRVFDVDTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g--~~l~s~~~d~~i~~w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 129 (315)
..-+...|++++|+|.. +++++|+.-|+|-+||+.+.+ .+..+..|..+|.++.|+|.+..-+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 34577889999999976 488899999999999995322 344566788899999999988777788899999999
Q ss_pred EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee-eeeecCCccceEEEEE
Q 021247 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVY 208 (315)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~ 208 (315)
-|+.+......+... ....++..+.|+.+...++.+..=|.+.+||+++... ...+..|...|+.+++
T Consensus 262 ~D~~~~i~e~v~s~~-----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLD-----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeecchhhHHHhhcC-----------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 999764332222211 1234577888988887777777667999999987654 6778889999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCe----eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC----ccceehc
Q 021247 209 SPVDPRVLFSASDDTHVHMYDAEGKS----LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN----MRAAMQS 280 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~ 280 (315)
+|..+.+|++++.|++.+|||++.-. .......|.-.|.+..|||.+-.|+|.+.|..|+|||.. .-.++.+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99999999999999999999987421 223335688999999999988789999999999999984 2233333
Q ss_pred ccccc----cc--eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 281 MTNHT----DQ--VWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 281 ~~~~~----~~--v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+ .|. .. ....+|.|+-.+++.+-.-..|-|||-
T Consensus 411 I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 411 I-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred e-eccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 3 232 22 346789999999999999999988873
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=7.2e-24 Score=173.30 Aligned_cols=263 Identities=19% Similarity=0.303 Sum_probs=202.6
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC--cc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM--QL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~--~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
.++.+.|..... ...++-+.|..+++|.-... +. .....+. .-.|+.......++++|+..+.|+|||++.
T Consensus 36 g~~s~~w~~~n~---lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNF---LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred cceeeeccccce---EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence 488888875321 23444456888999964322 12 2222333 223444444558999999999999999998
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
..+.+.++.|...|.++.|+....++ ++++..|.|.+..+.++.....+..+. ...++-+.|+|..+
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~Deyi-Asvs~gGdiiih~~~t~~~tt~f~~~s------------gqsvRll~ys~skr 177 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYI-ASVSDGGDIIIHGTKTKQKTTTFTIDS------------GQSVRLLRYSPSKR 177 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCccee-EEeccCCcEEEEecccCccccceecCC------------CCeEEEeecccccc
Confidence 87888899999999999999888876 567788999999987754443333221 23367899999776
Q ss_pred E-EEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEE
Q 021247 172 R-IACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSV 249 (315)
Q Consensus 172 ~-l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~ 249 (315)
. |.+++.+|.|.+||+....++.. ...|..|...|+|+|.+..+|++.+.|.+|.+||.........+.. ..+...+
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstv 256 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTV 256 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCccee
Confidence 5 46789999999999977666554 4579999999999999999999999999999999987665554442 3457789
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeCC
Q 021247 250 DASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPLG 297 (315)
Q Consensus 250 ~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~ 297 (315)
+|.++|.+|+.|...|.|..||++.. .++.++..|...|++++|-|..
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999999864 5788888999999999999864
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-23 Score=177.12 Aligned_cols=112 Identities=27% Similarity=0.506 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------eeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCc
Q 021247 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-------SLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~ 274 (315)
|+++.|.|.+++.|+.+++||.|++|.+..+ +.-..+..|...|.++.|+|- ...|++++.|-+|++||+..
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 6778888999999999999999999997632 234567889999999999993 46899999999999999999
Q ss_pred cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
++....+.+|.++|.+++|||+|+.+++++.||+|++|..
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 9888889999999999999999999999999999999963
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=158.74 Aligned_cols=264 Identities=24% Similarity=0.396 Sum_probs=193.9
Q ss_pred CCcEEEEcCCCC--cc-eeeccccccceEEEEeCCCCC-EEEEeeCC-------CeEEEEECCCCc---------eeEEe
Q 021247 39 DETVKLWRPDDM--QL-ERTNTGHCLGVVSVAAHPSGI-IAASASLD-------SFVRVFDVDTNA---------SIATL 98 (315)
Q Consensus 39 d~~v~~w~~~~~--~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d-------~~i~~w~~~~~~---------~~~~~ 98 (315)
|+.|.+.+++.. .+ .+.+..|.+.|..++-+|... +|+++-.+ ..+-+|++.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 677777665432 22 334556778899999999764 55555432 236799986542 22223
Q ss_pred e-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEE
Q 021247 99 E-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIA 174 (315)
Q Consensus 99 ~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~ 174 (315)
+ .+.+.+.++.|.|++..++ +-.|..|.+|++..... +..+..+.. ..+....++-+|+| +++.++
T Consensus 119 dteavg~i~cvew~Pns~kla--sm~dn~i~l~~l~ess~~vaev~ss~s--------~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLA--SMDDNNIVLWSLDESSKIVAEVLSSES--------AEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeE--EeccCceEEEEcccCcchheeeccccc--------ccccceecccccCCCCccceEE
Confidence 2 2345789999999887664 34589999999987655 333332221 12344577889999 577766
Q ss_pred EecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEEeecccccEEEEEEc
Q 021247 175 CGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-KSLVTAMSGHASWVLSVDAS 252 (315)
Q Consensus 175 ~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~~~~~~ 252 (315)
+. .|+++..||+++......+. .|...|+.+.|+|....+|+++++|+.|++||.+. ...+..+.+|.-|++++.|+
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 55 68899999999877665554 57778999999998888999999999999999985 45678889999999999999
Q ss_pred C-CCCeEEEEeCCCcEEEEecCcc-----------------------------ceehcccccccceEEEEEeeCCCEE-E
Q 021247 253 P-DGAAITTGSSDRTVKLWDLNMR-----------------------------AAMQSMTNHTDQVWGVSFRPLGGRV-V 301 (315)
Q Consensus 253 ~-~~~~l~s~~~d~~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l-~ 301 (315)
| ..+++++|+.|..|.+|...+- ..++++..|++.|.+++||....++ |
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 9 4678999999999999965310 0123566799999999999877765 7
Q ss_pred EEeCCCcEEEee
Q 021247 302 SVSDDKSISLYE 313 (315)
Q Consensus 302 s~~~d~~i~i~~ 313 (315)
+.+.||++.|=.
T Consensus 348 SLSYDGRviIs~ 359 (370)
T KOG1007|consen 348 SLSYDGRVIISS 359 (370)
T ss_pred EeccCceEEeec
Confidence 999999998743
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=176.03 Aligned_cols=257 Identities=22% Similarity=0.328 Sum_probs=179.6
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee--ccccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT--NTGHCLGVVSVAAHPSG-IIAASASLDSFVRVF 87 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~--~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w 87 (315)
-+|...|+.+.|.| +. ..|++++.|.++++||..+..+... ..||...|.+++|.+.. ..+++|+.||.|.||
T Consensus 97 ~aH~nAifDl~wap-ge---~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP-GE---SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred ccccceeEeeccCC-Cc---eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 38999999999999 33 4799999999999999998887665 78999999999999977 578899999999999
Q ss_pred ECCCCce-------eE--------------------EeeCCcccEEE---EEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247 88 DVDTNAS-------IA--------------------TLEASPSEVWQ---MQFDPKGTTLAVAGGGSASVKLWDTATWNL 137 (315)
Q Consensus 88 ~~~~~~~-------~~--------------------~~~~~~~~v~~---~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 137 (315)
|++.... .. .-..+...+.. +-+..+...++.+|..|+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9865420 00 00112222333 334445555555555699999999986443
Q ss_pred eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce--eeeeecCCccceE--EEEEcCCCC
Q 021247 138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK--FLHHLEGHFMPVR--SLVYSPVDP 213 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~--~~~~~~~~~~~v~--~~~~~~~~~ 213 (315)
....... +....+.. ......+.++.....|.+|++...|+.|++|++.+.. .+..+.++...-. .-..+| ++
T Consensus 253 ~~r~ep~-~~~~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~ 329 (720)
T KOG0321|consen 253 AYRQEPR-GSDKYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DD 329 (720)
T ss_pred ccccCCC-cccCccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC-CC
Confidence 2221110 00001111 1112347788888888988877779999999997543 2333333322111 112356 67
Q ss_pred cEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCc
Q 021247 214 RVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 214 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~ 274 (315)
.++++|+.|...++|.+...+ ....+.+|.-.|++++|.|.. .-++|++.|.++++|++..
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 899999999999999987654 344567899999999998843 3578889999999999853
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-23 Score=167.40 Aligned_cols=231 Identities=18% Similarity=0.309 Sum_probs=177.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCce---eEE------------------eeCCcccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247 71 SGIIAASASLDSFVRVFDVDTNAS---IAT------------------LEASPSEVWQMQFDPKGTTLAVAGGGSASVKL 129 (315)
Q Consensus 71 ~g~~l~s~~~d~~i~~w~~~~~~~---~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 129 (315)
-|+++|.|..|..|.|||+.--.. ..+ -.+|.+.|..+.|+..-+.++++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 468999999999999999863211 011 12467778899999888889999999999999
Q ss_pred EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208 (315)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 208 (315)
||+.++++..++.. |...|.++.|+|. ...|++|+.|+++.+.|.+........=.-.+.|-.++|
T Consensus 271 WD~~~g~p~~s~~~-------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 271 WDVDTGKPKSSITH-------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred EEcCCCCcceehhh-------------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 99999888776642 3445999999994 678899999999999999842211111112357888999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCcccee--hccccc
Q 021247 209 SPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAAM--QSMTNH 284 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~ 284 (315)
.|.....++++.+||.++-+|++.. +.+-.+..|.+.|.++++++. ..+++|++.|+.|++|++..-.+. +.-.-.
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 9988889999999999999999864 788889999999999999885 457899999999999998653332 211111
Q ss_pred ccceEEEEEeeCCC-EEEEEeCCCcEEEeec
Q 021247 285 TDQVWGVSFRPLGG-RVVSVSDDKSISLYEY 314 (315)
Q Consensus 285 ~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~ 314 (315)
-+...+.++.|+-. .++.||..+.++|||+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeec
Confidence 23455667777644 5677888888999996
No 159
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.92 E-value=1e-24 Score=188.06 Aligned_cols=288 Identities=19% Similarity=0.333 Sum_probs=227.5
Q ss_pred cccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC
Q 021247 2 KFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD 81 (315)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d 81 (315)
|.++...=+.+|...|+|+.|-..+. ++++|+.|..|+||..++..+.....||...++.++.+....++++++.|
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccc----eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC
Confidence 34555556789999999999987776 69999999999999999988889999999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (315)
..|++|.+.++..+..+.+|.+.|.+++|+|-. +.+.||++++||.+ .. .....|++. +...++.+
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~--~~~y~prp~------~~~~~~~~ 319 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LE--PRIYVPRPL------KFTEKDLV 319 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEecccc-cc--ccccCCCCC------Ccccccce
Confidence 999999999999999999999999999999963 56889999999987 11 112222221 12233557
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247 162 LSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241 (315)
Q Consensus 162 ~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 241 (315)
.++-|...+..+++++.|+.-..|....... +...+.-+.++.+-..+.+++-.+..+.+|++..+.+.+.+.+
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence 7788888889999999999988887543221 1111111222222224566777788899999999999999999
Q ss_pred ccccEEEEEEcC-CCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 242 HASWVLSVDASP-DGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 242 ~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|...+..+.++| +.++..+++.||...|||+-.+.+.+.. .+|. .+...+||++|..++...+-|.+.|+..
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 999999999999 4567789999999999999887665443 3454 5567899999999888888888888754
No 160
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.6e-23 Score=171.57 Aligned_cols=237 Identities=19% Similarity=0.288 Sum_probs=195.5
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc--eeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT 91 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~ 91 (315)
++.+-.+...|+++ .|++|+.-.++.|||+..... ..++......+..++.+||.++.+++..||.|.|||+.+
T Consensus 465 dnyiRSckL~pdgr----tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGR----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred ccceeeeEecCCCc----eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 34566777778776 499999999999999875433 223444445678899999999999999999999999999
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
...+..+.+|.+.+.++.++++|..+ -+|+-|++|+.||++.+..+.. ......|.++.++|++.
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcWDlregrqlqq--------------hdF~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCWDLREGRQLQQ--------------HDFSSQIFSLGYCPTGD 605 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCcee-ecCCCccceeehhhhhhhhhhh--------------hhhhhhheecccCCCcc
Confidence 99999999999999999999999865 7899999999999997654422 23345588999999999
Q ss_pred EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE
Q 021247 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA 251 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 251 (315)
+|+.|.+++.+.+-... +.....+..|...|.+++|.+ .++++++.+.|..+..|.+--+..+.+.. ....|.++++
T Consensus 606 WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDI 682 (705)
T KOG0639|consen 606 WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI 682 (705)
T ss_pred ceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeecc-ccCcceeeee
Confidence 99999999988776653 333456677999999999998 78899999999999999987665554443 4677999999
Q ss_pred cCCCCeEEEEeCCCcEEEEec
Q 021247 252 SPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 252 ~~~~~~l~s~~~d~~i~iwd~ 272 (315)
+.+.++++||+.|....+|.+
T Consensus 683 S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 683 SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceEEEecCCCcceEEEEE
Confidence 999999999999998888865
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=1.8e-20 Score=162.55 Aligned_cols=286 Identities=39% Similarity=0.602 Sum_probs=222.6
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-ceeeccccc-cceEEEEe-CCCCC-EEEEeeC-CCe
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-LERTNTGHC-LGVVSVAA-HPSGI-IAASASL-DSF 83 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~-~~v~~~~~-~~~g~-~l~s~~~-d~~ 83 (315)
....|...+.++.+.+... .++.++.|+.+.+|+..... ....+.++. ..+..+.. ++++. +++..+. |+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE----LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCc----EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 4568999999999988765 58888899999999987765 445555433 36666666 78887 5555444 999
Q ss_pred EEEEECCC-CceeEEeeCCcccEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247 84 VRVFDVDT-NASIATLEASPSEVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161 (315)
Q Consensus 84 i~~w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (315)
+++|+... ......+..|...+..++|+|++..+ +.++. ++.+++|+....+.+..+.. |...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v 201 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL-ASGSSLDGTIKLWDLRTGKPLSTLAG-------------HTDPV 201 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEE-EecCCCCCceEEEEcCCCceEEeecc-------------CCCce
Confidence 99999998 67778888899999999999999854 45554 99999999987555544432 45569
Q ss_pred EEEEECCCCC-EEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-EEE
Q 021247 162 LSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL-VTA 238 (315)
Q Consensus 162 ~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~ 238 (315)
.+++|+|++. .+++++.|+.+++||...+.... .+..|.... ...|+|.+ .++++++.|+.+++|+.+.... ...
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEE
Confidence 9999999998 55555999999999988777777 677887765 44788854 7888999999999999986543 444
Q ss_pred eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc--ccccceEEEEEeeCCCEEEEE-eCCCcEEEeec
Q 021247 239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT--NHTDQVWGVSFRPLGGRVVSV-SDDKSISLYEY 314 (315)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~~ 314 (315)
+..|...+.++.++|++..+++++.|+.+++|++.......... .|...+..+.|.+++..++.+ ..|+.+++|+.
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 46788999999999988888889999999999988776655554 677778999994332456555 68899999875
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=4.6e-22 Score=168.33 Aligned_cols=273 Identities=21% Similarity=0.318 Sum_probs=206.2
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI 95 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~ 95 (315)
.|+.++|-|++.. ++++ .+..+.+||+..+.+...+++|++.|.+++++.+|..++||+.|+.+.+|+..-...
T Consensus 14 ci~d~afkPDGsq---L~lA--Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQ---LILA--AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCce---EEEe--cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-
Confidence 8999999998864 3333 345899999999999999999999999999999999999999999999999654332
Q ss_pred EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE
Q 021247 96 ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC 175 (315)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 175 (315)
..+ .|.+.|.++.|+|-...+ ++++ -....+|........ +.....++.+++|..||.+|+.
T Consensus 88 LkY-SH~D~IQCMsFNP~~h~L-asCs-LsdFglWS~~qK~V~---------------K~kss~R~~~CsWtnDGqylal 149 (1081)
T KOG1538|consen 88 LKY-SHNDAIQCMSFNPITHQL-ASCS-LSDFGLWSPEQKSVS---------------KHKSSSRIICCSWTNDGQYLAL 149 (1081)
T ss_pred eee-ccCCeeeEeecCchHHHh-hhcc-hhhccccChhhhhHH---------------hhhhheeEEEeeecCCCcEEEE
Confidence 222 477899999999987655 4443 245667766542211 1223345889999999999999
Q ss_pred ecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEE
Q 021247 176 GSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDP----RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSV 249 (315)
Q Consensus 176 ~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~ 249 (315)
|..+|+|.+-+-..... +..-.+.+.+|.+++|+|..+ ..++......++.+|.+.+.. +..-..-.-...++
T Consensus 150 G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGKDRALNFDPCCI 228 (1081)
T ss_pred eccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecccccCCCCchhh
Confidence 99999999987533222 233345788999999998533 356677777777777765432 22222223345678
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+-|+|.+++.||.|+.+.+|--+ |-.+.++......||.|+..|++++++.|+.||+|-.|++
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 889999999999999999999543 5556666555568999999999999999999999988764
No 163
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4e-21 Score=162.59 Aligned_cols=238 Identities=22% Similarity=0.291 Sum_probs=193.9
Q ss_pred ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE-EeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247 60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA-TLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137 (315)
Q Consensus 60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 137 (315)
..+|.+++++.+.+.||.+-.||.|.+|++..+-... .+.+ ....|..++|.+.++ + ++.+.+|.|.-||+.+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-L-FS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-L-FSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-E-EeecCCceEEEEecccCce
Confidence 3579999999999999999999999999999875433 3333 345799999997665 3 5677899999999998877
Q ss_pred eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcE
Q 021247 138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRV 215 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~ 215 (315)
...+.. ....|.+++.+|.+..++.|+.||.++.++...++.... +.-.++.+.+++|+| .+..
T Consensus 103 ~~~~d~-------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~ 168 (691)
T KOG2048|consen 103 KYNIDS-------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTK 168 (691)
T ss_pred eEEecC-------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccE
Confidence 765532 223489999999999999999999888888877765433 333457899999998 5667
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEe-------e-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247 216 LFSASDDTHVHMYDAEGKSLVTAM-------S-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 216 l~s~~~d~~i~~wd~~~~~~~~~~-------~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
+++|+.||.|++||.+.+..+... . ....-|+++.+-.++ .+++|..-|+|.+||...+...+.+..|...
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDAD 247 (691)
T ss_pred EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence 999999999999999987655521 1 133457888877554 6899999999999999999999999999999
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 288 VWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 288 v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|.+++..+++.+|+++|.|+.|..|..
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 999999999999999999999987753
No 164
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.3e-22 Score=159.55 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=191.7
Q ss_pred ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247 60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137 (315)
Q Consensus 60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 137 (315)
..+|++++|||...++++++.|+++++|.+... ..++.+.....+|.+..|.|+|...+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 468999999999999999999999999998754 346666667789999999999997778888899999999987665
Q ss_pred eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEE
Q 021247 138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLF 217 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 217 (315)
...- ++.+. .+..+....+++++++|+..+..|.|.+.-..+++.+..++. .+.|..+.|+. +++.|+
T Consensus 293 ~k~~---~~~g~-------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 293 TKLK---PPYGV-------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELL 360 (514)
T ss_pred cccc---CCCCc-------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEE
Confidence 4321 11111 123467788899999999999999999998888888877763 46889999996 678888
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc------cceehcccccccceEE
Q 021247 218 SASDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM------RAAMQSMTNHTDQVWG 290 (315)
Q Consensus 218 s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~v~~ 290 (315)
+++.+|.|.+||++...++....... -.=++++.++++++||+|+..|.|.|||.++ .+++.++.+-...|++
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 88899999999999988877765322 2235778889999999999999999999764 3456666666778999
Q ss_pred EEEeeCCCEEEEEeC--CCcEEE
Q 021247 291 VSFRPLGGRVVSVSD--DKSISL 311 (315)
Q Consensus 291 ~~~s~~~~~l~s~~~--d~~i~i 311 (315)
+.|+|++..||.+|. +..+||
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred eeeCcchhhhhhhhhccccceEE
Confidence 999999998876654 345554
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.2e-21 Score=149.40 Aligned_cols=243 Identities=20% Similarity=0.341 Sum_probs=181.3
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc------------eeEEee-CCcccEEEEEE-------CCCCCeEEEEe
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNA------------SIATLE-ASPSEVWQMQF-------DPKGTTLAVAG 121 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~------------~~~~~~-~~~~~v~~~~~-------~~~~~~~~~~~ 121 (315)
....+.|+|||.-|++-+.|..+++|++.... ....+. .....|...+| .|+.+ ++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeec
Confidence 34567899999999999999999999985321 011111 12334555555 35545 45667
Q ss_pred cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc-ccceeeeee--c-
Q 021247 122 GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TRAKFLHHL--E- 197 (315)
Q Consensus 122 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~-~~~~~~~~~--~- 197 (315)
+.+.-|++||.-+++..+.+..-... ..-..-.+++|+|||.+|++|. .+.|++||+ ++++..... .
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~--------de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQ--------DEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred cccCceeeeeccccccccchhhhhhH--------HhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 88999999999999887766321100 0011135899999999999885 568999999 566532221 1
Q ss_pred ----CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC-CCcEEEEec
Q 021247 198 ----GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDL 272 (315)
Q Consensus 198 ----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~ 272 (315)
+..+.+.+++|+|.+...++.++-..++-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|+. |-.|..||+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 235678999999999999999999999999988888888889999999999999999999988876 678999999
Q ss_pred Cc-cceehccccccc-ceEE--EEEeeCCCEEEEEeCCCcEEEeec
Q 021247 273 NM-RAAMQSMTNHTD-QVWG--VSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 273 ~~-~~~~~~~~~~~~-~v~~--~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+. +.++..+..|.+ .-.. ..+.|+++.|++|+.||.|++||+
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 86 456666666654 2222 455688999999999999999996
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=8e-21 Score=164.40 Aligned_cols=274 Identities=16% Similarity=0.178 Sum_probs=196.2
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCce--eE----EeeCCcccEEEEEECC
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNAS--IA----TLEASPSEVWQMQFDP 112 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~--~~----~~~~~~~~v~~~~~~~ 112 (315)
+.+.+|+..+.........-..+|.++.|+|. ..+++.|..+|.|-+||+..+.. .. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899998765222222234568999999985 47888999999999999987754 22 2245778899999865
Q ss_pred CCCe-EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccc
Q 021247 113 KGTT-LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRA 190 (315)
Q Consensus 113 ~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~ 190 (315)
+... -+++++.||.|..|+++................ ..........++++.|.+ +-+.|+.|+.+|.|.--.....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccc-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 4332 245677799999998875333111110000000 001112233478999988 4568899999999888443221
Q ss_pred e--------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEEeecccccEEEEEEcCCC-CeEEE
Q 021247 191 K--------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTAMSGHASWVLSVDASPDG-AAITT 260 (315)
Q Consensus 191 ~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s 260 (315)
+ .......|.++|+++.++|.....+++++ |-++++|... ....+..+..+...+++++|||.. ..+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 1 12345568899999999998888888888 8899999987 556666677778889999999964 57899
Q ss_pred EeCCCcEEEEecCcc--ceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 261 GSSDRTVKLWDLNMR--AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+..||.+.+||+... ++..+..-+....+.+.|+++|+.|+.|.+.|++.+|+++
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999999999999753 4455555556677888999999999999999999999873
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=9.4e-21 Score=151.48 Aligned_cols=282 Identities=20% Similarity=0.309 Sum_probs=197.6
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-------c--eeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-------L--ERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-------~--~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
.++|+.+.|.+... +.++||+.|..|++|...... . ...+..|..+|+.+.|+|+|.+++||+.+|.+
T Consensus 13 ~~pv~s~dfq~n~~---~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL---NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcc---cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 36899999987554 379999999999999754221 1 22457899999999999999999999999999
Q ss_pred EEEECC--------C-----C---ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247 85 RVFDVD--------T-----N---ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148 (315)
Q Consensus 85 ~~w~~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 148 (315)
.+|... + . .....+..|...+..++|.|++.+ +++++.|..+++||+..++.....
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~------- 161 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL------- 161 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec-------
Confidence 999876 2 1 123355678889999999999885 467889999999999998877655
Q ss_pred CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--------C-----------Cc----cceEE
Q 021247 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--------G-----------HF----MPVRS 205 (315)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--------~-----------~~----~~v~~ 205 (315)
..|..++..++|.|.++++++-+.|...+.+++...+.+..+. . |. .-.+.
T Consensus 162 ------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 162 ------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred ------cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 3466678899999999999998888877777664333222111 0 10 12345
Q ss_pred EEEcCCCCcEEEEEeC----C-----CeEEEEeCCCC-eeEEEeecccccEEEEEEcC------------------CCCe
Q 021247 206 LVYSPVDPRVLFSASD----D-----THVHMYDAEGK-SLVTAMSGHASWVLSVDASP------------------DGAA 257 (315)
Q Consensus 206 ~~~~~~~~~~l~s~~~----d-----~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~------------------~~~~ 257 (315)
+.|+| ++.+|++... . +..++|+.+.. .....+.+-..+...+.++| -+..
T Consensus 236 lsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 57777 5566665432 1 23455554321 12222333333333444433 2234
Q ss_pred EEEEeCCCcEEEEecCccceehccc-ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 258 ITTGSSDRTVKLWDLNMRAAMQSMT-NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 258 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
++.++ ...|.+||..+-+++.... -|-..++.++|+++|..|+..|.||.+.+-.+
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 45555 5579999999887776553 48889999999999999999999998776443
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=1.8e-19 Score=151.77 Aligned_cols=267 Identities=15% Similarity=0.211 Sum_probs=174.2
Q ss_pred EEEeeCCCcEEEEcCCC-Cc--ceeeccccccceEEEEeCCCCCEEEEe-eCCCeEEEEECCC-Cce--eEEeeCCcccE
Q 021247 33 LLTGSLDETVKLWRPDD-MQ--LERTNTGHCLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDT-NAS--IATLEASPSEV 105 (315)
Q Consensus 33 l~sgs~d~~v~~w~~~~-~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~-~~~--~~~~~~~~~~v 105 (315)
.++.+.|+.|++|+.++ .+ +.+.+. +......+.++|++++|+++ ..++.|.+|++.. +.. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44457799999999863 33 223332 33557788999999987655 4578899999973 322 22222 22345
Q ss_pred EEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE-EecCCCcEE
Q 021247 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA-CGSMDGTIS 183 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~ 183 (315)
..+.++|+++.++++...++.|.+||+.....+ ..... .........++++|++++++ +...++.|.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-----------IEGLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-----------ccCCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 689999999988888777899999998642211 11100 00112245788999999885 455679999
Q ss_pred EEEcccceeee-------eecCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCC--Ce--eEEEeec------cccc
Q 021247 184 VFDVTRAKFLH-------HLEGHFMPVRSLVYSPVDPRVLFSAS-DDTHVHMYDAEG--KS--LVTAMSG------HASW 245 (315)
Q Consensus 184 i~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~--~~--~~~~~~~------~~~~ 245 (315)
+||+.+...+. .... ....+.+.|+| ++++++++. .++.|.+|+++. ++ .+..+.. +..+
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW 229 (330)
T ss_pred EEEECCCCcccccCCCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence 99997632221 1111 23457889998 455665554 489999999863 22 2333322 1223
Q ss_pred EEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehccccc---ccceEEEEEeeCCCEEEEEeC-CCcEEEeec
Q 021247 246 VLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNH---TDQVWGVSFRPLGGRVVSVSD-DKSISLYEY 314 (315)
Q Consensus 246 i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~-d~~i~i~~~ 314 (315)
...+.++|++++++++.. ++.|.+|+++.......+..+ ....+.+.++|+|++|+++.. +++|.+|++
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 446889999999888754 788999998653211111122 124568899999999987665 899999976
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7e-22 Score=163.98 Aligned_cols=259 Identities=22% Similarity=0.399 Sum_probs=186.6
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC--------CcceeeccccccceEEEEeCCCCCEEEEeeC
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD--------MQLERTNTGHCLGVVSVAAHPSGIIAASASL 80 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~--------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~ 80 (315)
.++.|.+.|..++|.|... .|++|+.||++++|+++. .+....+.+|.++|.|+.+.+.+..+.+|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep----~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP----VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC----eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 5678889999999988665 699999999999999832 1224467899999999999999999999999
Q ss_pred CCeEEEEECCCCc----------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247 81 DSFVRVFDVDTNA----------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150 (315)
Q Consensus 81 d~~i~~w~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (315)
||+|+.|++..+. ...++.+|.+.+|.+++++.... +++++.||++++|+...... .++..+...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~--- 439 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEH--- 439 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCcccc---
Confidence 9999999765321 22456789999999999987654 57889999999998765333 222222111
Q ss_pred CCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceeeeeecC-------CccceEEEEEcCCCCcEEEEEeCC
Q 021247 151 PTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
.+..++.+-... ...++...-+.--+++.........+.. ....+.-+.++| +..+.+++..|
T Consensus 440 --------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed 510 (577)
T KOG0642|consen 440 --------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHED 510 (577)
T ss_pred --------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccC
Confidence 112333332211 1122222222233333333322222211 112355667777 45789999999
Q ss_pred CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccc
Q 021247 223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT 285 (315)
Q Consensus 223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 285 (315)
++|+++|...+.++..+..|...++++++.|+|.+|++++.|+.|++|.+...........|.
T Consensus 511 ~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999999999999999999999999999999999999999999998776666655554
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=1.3e-18 Score=150.76 Aligned_cols=285 Identities=36% Similarity=0.583 Sum_probs=220.8
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeC-CCcEEEEcCCCCcceeeccccccceEEEEeCCCCC-EEEEeeCCCeEE
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSL-DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVR 85 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~-d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~ 85 (315)
.....|...|.+++|+|... .+++++. |+.+++|+.........+.+|...+.++.++|++. ++++++.|+.++
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGK----LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEecCcccEEEEEECCCCC----EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 34568999999999999875 5777775 99999999987777777888999999999999997 666669999999
Q ss_pred EEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEE
Q 021247 86 VFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 86 ~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
+||...+..+. .+..+.... ...|+|++. ++++++.++.+++||.+.... +..+ ..+...+.+
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~ 289 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTL-------------SGHSSSVLS 289 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEE-------------ecCCccEEE
Confidence 99988777776 577776665 448999985 445888999999999986554 2222 123455889
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEEee
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGKSLVTAMS 240 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~ 240 (315)
+.|+|++..+++++.|+.+.+||..+........ .|...+..+.| +.+...++.+ ..|+.+.+|+...........
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 368 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEec
Confidence 9999988888888888889999998877666555 77778899999 5342444444 678899999988766222222
Q ss_pred cccccEEEEEEcCCCCeEEE-EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 241 GHASWVLSVDASPDGAAITT-GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
... .+..+.+.+ ...+.. +..++.+.+|+............+...+....+++++..+++++.++++++|+.
T Consensus 369 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 369 GHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 222 278888888 544444 688999999999987766555443368889999999999999999999999985
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.5e-21 Score=149.31 Aligned_cols=270 Identities=17% Similarity=0.239 Sum_probs=191.0
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC--CCCEEEEeeCCCeEEEEECCCCceeEEe--eCCc-ccE
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP--SGIIAASASLDSFVRVFDVDTNASIATL--EASP-SEV 105 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~--~g~~l~s~~~d~~i~~w~~~~~~~~~~~--~~~~-~~v 105 (315)
..+|++-..|+|++||..+.+....++++...++.+.|.. ....+.+++.||+||+||++.......+ ..++ .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688899999999999999988888999888888888866 5678899999999999999987654433 3333 455
Q ss_pred EEEEECCCCCeEEEEec----CCCeEEEEecCCcce-eeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCC
Q 021247 106 WQMQFDPKGTTLAVAGG----GSASVKLWDTATWNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMD 179 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~----~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~d 179 (315)
.+++.+..++ ++++|. .+..+.+||.|..+. +..+ ...|.+-|++++|+|. -+.|++||.|
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------------~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQL------------NESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhh------------hhhccCcceeEEecCCCCCeEEeeccc
Confidence 6666655555 444443 467899999987554 3222 1245666999999995 5688999999
Q ss_pred CcEEEEEcccce---eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec------------ccc
Q 021247 180 GTISVFDVTRAK---FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG------------HAS 244 (315)
Q Consensus 180 g~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------~~~ 244 (315)
|.|.+||+.... .+...-.|...|..+.|....=..+.+-+......+|+++.+.....+.. -..
T Consensus 188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 999999986442 23334456778999999864434688889999999999987653322211 112
Q ss_pred cEEEEEEcCCCCeEEEEeC-CCcEEEEecCc---cce---ehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 245 WVLSVDASPDGAAITTGSS-DRTVKLWDLNM---RAA---MQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 245 ~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~---~~~---~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
.+...-...+...++.++. -++..++-+.. +.. ...+.+ |.+-|.++.|.-.+..+.+||.||.+.+|.
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 2222222224556666655 56677775542 222 222334 666788888888888999999999999997
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.5e-20 Score=143.87 Aligned_cols=235 Identities=18% Similarity=0.264 Sum_probs=175.3
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247 63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS 142 (315)
Q Consensus 63 v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 142 (315)
..++.|++.|.+++.|..||.|-+||+.+...-+.+..|-.+|.+++|+++|+.+ ++++.|..|.+||+..+.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKL-LTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEe-eeecCCceeEEEeccCCCceeEEE
Confidence 6899999999999999999999999999988778888999999999999999865 678899999999999998888776
Q ss_pred CCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccce--eeeee-cCCc-cceEEEEEcCCCCcEEE
Q 021247 143 IPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAK--FLHHL-EGHF-MPVRSLVYSPVDPRVLF 217 (315)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~--~~~~~-~~~~-~~v~~~~~~~~~~~~l~ 217 (315)
++.+ |..+.|+|.. +.+++.-.+..-.+.++...+ .+..- .+.. .......|.+ .+++++
T Consensus 105 f~sp--------------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIi 169 (405)
T KOG1273|consen 105 FDSP--------------VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYII 169 (405)
T ss_pred ccCc--------------cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEE
Confidence 6544 8889999954 344444444445555554322 11110 0111 1112234555 788999
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc----c---ce--ehc---cccc
Q 021247 218 SASDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM----R---AA--MQS---MTNH 284 (315)
Q Consensus 218 s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~---~~--~~~---~~~~ 284 (315)
+|...|.+.+||..+.+++..+.-.. ..|..+.++..|+.|+..+.|+.||.+++.. + ++ .+. +-+
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN- 248 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN- 248 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh-
Confidence 99999999999999988887766544 6788999999999999999999999998762 1 11 111 111
Q ss_pred ccceEEEEEeeCCCEEEEEeCC-CcEEEeec
Q 021247 285 TDQVWGVSFRPLGGRVVSVSDD-KSISLYEY 314 (315)
Q Consensus 285 ~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~ 314 (315)
.-+=.++.||.+|.|+++++.- ..++||.-
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEec
Confidence 1223478999999999776653 68888863
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.9e-21 Score=160.33 Aligned_cols=254 Identities=20% Similarity=0.234 Sum_probs=187.2
Q ss_pred ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC--------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeE
Q 021247 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN--------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASV 127 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 127 (315)
+..|...++.+.|+|....+++++.|+++++|+++.. +.+.++..|.++|.++++.+.+..+ ++|+-||+|
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~-ysgg~Dg~I 368 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC-YSGGIDGTI 368 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE-EeeccCcee
Confidence 4568889999999999999999999999999999321 3567889999999999999888754 789999999
Q ss_pred EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee--eeeecCCccceEE
Q 021247 128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRS 205 (315)
Q Consensus 128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~ 205 (315)
+.|++.. +.-. +....+ ........+|.+.+..+++++....|++++.||+++.|+...... ...-+.|. ...+
T Consensus 369 ~~w~~p~-n~dp-~ds~dp-~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g-~Pls 444 (577)
T KOG0642|consen 369 RCWNLPP-NQDP-DDSYDP-SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG-YPLS 444 (577)
T ss_pred eeeccCC-CCCc-ccccCc-chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC-Ccce
Confidence 9997642 1100 000000 000112245677788999999999999999999999999865554 11122222 3355
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeec-------ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247 206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSG-------HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278 (315)
Q Consensus 206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 278 (315)
+.+-.......++...-+.--+++++....+..+.. ....++.+..+|...+.+++..|+.|+++|..+++.+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 666544444444444444444455443332222211 1244677889999999999999999999999999999
Q ss_pred hcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 279 QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 279 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+.+..|...++++++.|+|.+|++++.|+.+++|.+
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 999999999999999999999999999999999976
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.6e-19 Score=153.13 Aligned_cols=299 Identities=15% Similarity=0.221 Sum_probs=213.5
Q ss_pred hhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---Ccc-eeeccccccceEEEEeCCCCCEEEEeeCCC
Q 021247 7 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQL-ERTNTGHCLGVVSVAAHPSGIIAASASLDS 82 (315)
Q Consensus 7 ~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~ 82 (315)
.....-|+-.++|++++|.+. ++++|..||.|.+|.-.. ... ...+.=|...|+++.|+++|.+|+||+..+
T Consensus 198 ~~~~~~Htf~~t~~~~spn~~----~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 198 RDITVHHTFNITCVALSPNER----YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred chhhhhhcccceeEEeccccc----eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence 344567888899999999775 799999999999996322 111 223445788999999999999999999999
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
.+-+|.+.+++ .+.+..-..+|..+.++|++....+. ..|.+|.+....+.....++....+.. +..+.......+
T Consensus 274 VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~-~~DNqI~li~~~dl~~k~tIsgi~~~~--~~~k~~~~~l~t 349 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV-LEDNQIHLIKASDLEIKSTISGIKPPT--PSTKTRPQSLTT 349 (792)
T ss_pred EEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE-ecCceEEEEeccchhhhhhccCccCCC--ccccccccccce
Confidence 99999999987 45555566889999999999876554 568999998887766655554333221 111334456678
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-----------CCccceEEEEEcCCCCcEEEEEe--------C--
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-----------GHFMPVRSLVYSPVDPRVLFSAS--------D-- 221 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~s~~--------~-- 221 (315)
.++++|.-+.++-.+..|.|.+||+-+.+.+..+. .+...++.++.+.. +.++++.- .
T Consensus 350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhccCc
Confidence 89999977778888899999999997766554432 12234566666653 66666653 2
Q ss_pred CCeEEEEeCCCC----eeEEE-eecccccEEEEEEcC-CCC-eEEEEeCCCcEEEEecCc----------cceehccccc
Q 021247 222 DTHVHMYDAEGK----SLVTA-MSGHASWVLSVDASP-DGA-AITTGSSDRTVKLWDLNM----------RAAMQSMTNH 284 (315)
Q Consensus 222 d~~i~~wd~~~~----~~~~~-~~~~~~~i~~~~~~~-~~~-~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~ 284 (315)
...+++|-.... .+... ...|...+...++.+ ... .+++++.||.+++|-+.. +.+...-..|
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 235778864432 22222 346776665555544 333 789999999999998832 1122222347
Q ss_pred ccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 285 TDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 285 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..++++++|+.|| .++++|.|++|.|||+.
T Consensus 509 k~~i~a~~fs~dG-slla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 509 KTPITALCFSQDG-SLLAVSFDDTITIWDYD 538 (792)
T ss_pred cCcccchhhcCCC-cEEEEecCCEEEEecCC
Confidence 7899999999999 58889999999999974
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.2e-19 Score=139.42 Aligned_cols=249 Identities=17% Similarity=0.259 Sum_probs=185.0
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCC-------CcEEEEcCCCCc---------ceeecc-ccccceEEEEeCC
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLD-------ETVKLWRPDDMQ---------LERTNT-GHCLGVVSVAAHP 70 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d-------~~v~~w~~~~~~---------~~~~~~-~h~~~v~~~~~~~ 70 (315)
.+..-|.++||.++-+|.... +|+|+-.+ -.+-||.+.... +...++ .+.+.+.++-|.|
T Consensus 57 kvf~h~agEvw~las~P~d~~---ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQR---ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCc---eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 345678899999999998764 56655332 236789754221 122233 4556899999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCce-eEEeeC-----CcccEEEEEECC--CCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247 71 SGIIAASASLDSFVRVFDVDTNAS-IATLEA-----SPSEVWQMQFDP--KGTTLAVAGGGSASVKLWDTATWNLIATLS 142 (315)
Q Consensus 71 ~g~~l~s~~~d~~i~~w~~~~~~~-~~~~~~-----~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 142 (315)
++..+++.. |..|.+|++..... +..+.. +.....+-+|+| +++.++ ...|+++..||+|+.+....+.
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~--tt~d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA--TTSDSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE--EeCCCcEEEEEccchhhhcchh
Confidence 999999887 88899999998766 333321 233456667888 455543 3568999999999877654442
Q ss_pred CCCCCCCCCCccCCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEe
Q 021247 143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220 (315)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 220 (315)
..|...++.+.|+|+-+ +|++|+.||.|++||.+..+ ++..+.+|.--|+++.|+|...+++++++
T Consensus 211 ------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 211 ------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred ------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 23555699999999865 67889999999999998554 57889999999999999999999999999
Q ss_pred CCCeEEEEeCCCC-----------------------------eeEEEeecccccEEEEEEcCCCC-eEEEEeCCCcEEEE
Q 021247 221 DDTHVHMYDAEGK-----------------------------SLVTAMSGHASWVLSVDASPDGA-AITTGSSDRTVKLW 270 (315)
Q Consensus 221 ~d~~i~~wd~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~iw 270 (315)
.|..+.+|....- -++..+..|...|.+++|+.-.. ++|+=+.||++-|=
T Consensus 279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 9999999964210 12235667999999999998655 56888999999876
Q ss_pred ecCc
Q 021247 271 DLNM 274 (315)
Q Consensus 271 d~~~ 274 (315)
.+..
T Consensus 359 ~V~r 362 (370)
T KOG1007|consen 359 SVPR 362 (370)
T ss_pred cCCh
Confidence 6653
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.9e-19 Score=151.89 Aligned_cols=153 Identities=25% Similarity=0.406 Sum_probs=125.8
Q ss_pred eEEEEECC-CCCEEEEecCCCcEEEEEcccc-------eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 161 VLSVAWSP-DGRRIACGSMDGTISVFDVTRA-------KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 161 i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
|+.+.|+| |...|++++.||.|++|.+..+ .....+..|...|.++.|+|.-..+|++++.|-+|++||++.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 56789998 7789999999999999998543 234567889999999999998888999999999999999999
Q ss_pred CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-ehcccccc-cceEEEEEeeCCCEEEEEeCCC---
Q 021247 233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-MQSMTNHT-DQVWGVSFRPLGGRVVSVSDDK--- 307 (315)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~--- 307 (315)
.+....+.+|.+.|.+++|+|+|+.+++.++||+|++++-++++. +..-.+.. ..--.+.|--+|++++..|-|+
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~Se 789 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSE 789 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccch
Confidence 999999999999999999999999999999999999999887643 33322211 1223467888999998887764
Q ss_pred -cEEEee
Q 021247 308 -SISLYE 313 (315)
Q Consensus 308 -~i~i~~ 313 (315)
.|.+|+
T Consensus 790 RQv~~Y~ 796 (1012)
T KOG1445|consen 790 RQVQMYD 796 (1012)
T ss_pred hhhhhhh
Confidence 455554
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.2e-19 Score=139.37 Aligned_cols=238 Identities=21% Similarity=0.365 Sum_probs=176.8
Q ss_pred ccccceEEEEEeecCCC-CCcEEEEeeCCCcEEEEcCCC--Cccee-------eccccccceEEEEeCC-CCCEEEEeeC
Q 021247 12 AHEESVWAVTWVPATET-RPALLLTGSLDETVKLWRPDD--MQLER-------TNTGHCLGVVSVAAHP-SGIIAASASL 80 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~-~~~~l~sgs~d~~v~~w~~~~--~~~~~-------~~~~h~~~v~~~~~~~-~g~~l~s~~~ 80 (315)
.|.=+++.+.|.|+... .+.+|||.+ ..+++|.... .+..- ....+..++++..|+. +-+++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 57789999999998752 345666544 5899998652 22111 1234667899999986 4578999999
Q ss_pred CCeEEEEECCCCce---eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247 81 DSFVRVFDVDTNAS---IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 81 d~~i~~w~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
|-++-+||++++.. ...+..|..+|..++|...+..++++.+.||.+|++|+|..+--..+. ..+ ..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-E~p---------~~ 241 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY-EDP---------SP 241 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe-cCC---------CC
Confidence 99999999998743 456778999999999999888899999999999999999755332221 111 11
Q ss_pred CcceEEEEECCC-CCEEEEecCC-CcEEEEEccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 021247 158 KKFVLSVAWSPD-GRRIACGSMD-GTISVFDVTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS 234 (315)
Q Consensus 158 ~~~i~~~~~~~~-~~~l~~~s~d-g~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 234 (315)
......++|+++ -+++|+-..| ..|.+.|++. ...+..+++|...|+.++|.|..+..|.++++|..+.+||+....
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 334678899885 4566765554 4699999974 456888999999999999999888999999999999999986431
Q ss_pred e------EEEeecccccEEEEEEcC-CCCeEEEEe
Q 021247 235 L------VTAMSGHASWVLSVDASP-DGAAITTGS 262 (315)
Q Consensus 235 ~------~~~~~~~~~~i~~~~~~~-~~~~l~s~~ 262 (315)
. +..+. -.+.|+.+.|++ .+..++.+.
T Consensus 322 ~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 322 RENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 1 11122 345689999997 455666554
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-19 Score=159.57 Aligned_cols=280 Identities=17% Similarity=0.265 Sum_probs=196.1
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc---cceEEEEeCC--CCCEEEEeeCCCeEEEEECC
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC---LGVVSVAAHP--SGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~---~~v~~~~~~~--~g~~l~s~~~d~~i~~w~~~ 90 (315)
.-..+.|.|..+ .++++.....|++||.+..+....+..+. ..|..+.+-. |..++++|+.||.||||+--
T Consensus 1066 ~pk~~~~hpf~p----~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP----QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCc----eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 455677888765 47777767789999998777655554332 3466666533 45789999999999999743
Q ss_pred CC-----ceeEEee-------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 91 TN-----ASIATLE-------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 91 ~~-----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
.. +.+.... ...+.-.-+.|.....+++++ |+-..|+|||......+..+.... .
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~~diP~~s------------~ 1208 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVVADIPYGS------------S 1208 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeEeecccCC------------C
Confidence 22 1222111 111222556787776766655 457899999998766665554321 1
Q ss_pred cceEEEEECC-CCCEEEEecCCCcEEEEEcccce---eeeeecCCccc--eEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 159 KFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAK---FLHHLEGHFMP--VRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 159 ~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
..++++.-+. .|+.+++|..||.|++||.+... .+...+.|+.. |..+.+.+.+-.-|++|+.||.|++||++.
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 2255554443 47999999999999999987543 35566778776 888888875555799999999999999987
Q ss_pred CeeEE--Eeeccc--c-cEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-------ccceEEEEEeeCCCEE
Q 021247 233 KSLVT--AMSGHA--S-WVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-------TDQVWGVSFRPLGGRV 300 (315)
Q Consensus 233 ~~~~~--~~~~~~--~-~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l 300 (315)
..... ....|- + ..+++..+++..++|+|+. +.|+||++.. +.+..+..+ .+.+.+++|||-.-.+
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhh
Confidence 42222 222332 3 4889999999999999998 9999999863 333333221 2467899999988788
Q ss_pred EEEeCCCcEEEeec
Q 021247 301 VSVSDDKSISLYEY 314 (315)
Q Consensus 301 ~s~~~d~~i~i~~~ 314 (315)
|+|+.|.+|.||.-
T Consensus 1367 AaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSC 1380 (1387)
T ss_pred hhccCCceEEEeec
Confidence 99999999999963
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=4e-19 Score=136.58 Aligned_cols=282 Identities=18% Similarity=0.273 Sum_probs=199.3
Q ss_pred ceEEEEEeecCCCCCcEEEEeeC----CCcEEEEcCC--CCcceee-ccccccceEEEEeCCCCC-----EEEEeeCCCe
Q 021247 16 SVWAVTWVPATETRPALLLTGSL----DETVKLWRPD--DMQLERT-NTGHCLGVVSVAAHPSGI-----IAASASLDSF 83 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~----d~~v~~w~~~--~~~~~~~-~~~h~~~v~~~~~~~~g~-----~l~s~~~d~~ 83 (315)
..+++.|+-. +...-.|+.||. .+.|.+-.++ .++.... .-.|.-+++.+.|.|+.. +|++. +-.
T Consensus 46 ~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred ceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 6788999854 334457898885 3556666443 3332221 235888999999998753 55544 347
Q ss_pred EEEEECCCCceeE---------EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247 84 VRVFDVDTNASIA---------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK 154 (315)
Q Consensus 84 i~~w~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (315)
+|+|.+....... ....+..++.+..|+.-...++.+++-|-++.+||+.++.. +...++.
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------~~vkTQL 192 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------GTVKTQL 192 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc----------cceeeEE
Confidence 9999998532111 11234568889999987777888889999999999987521 0011123
Q ss_pred CCCCcceEEEEECCCCC-EEEEecCCCcEEEEEcccceeeeeec---CCccceEEEEEcCCCCcEEEEEeCC-CeEEEEe
Q 021247 155 SSSKKFVLSVAWSPDGR-RIACGSMDGTISVFDVTRAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDD-THVHMYD 229 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~-~l~~~s~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd 229 (315)
..|...|..++|...+. .||+.+.||.+++||++....-..+. ....+..-++|++.+++++++-..| ..|.+-|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 35666799999998654 67899999999999998765443332 2234677889999999999887765 5689999
Q ss_pred CCC-CeeEEEeecccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccce------ehcccccccceEEEEEeeCCCEEE
Q 021247 230 AEG-KSLVTAMSGHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAA------MQSMTNHTDQVWGVSFRPLGGRVV 301 (315)
Q Consensus 230 ~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~ 301 (315)
++. ...+..+++|.+.|++++|.|. ...+.|+|.|..+.+||+.+... +..+. -++.|+.+.|++...--+
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence 884 5678889999999999999996 46899999999999999976322 22222 356899999997655444
Q ss_pred EEeCCCcEEE
Q 021247 302 SVSDDKSISL 311 (315)
Q Consensus 302 s~~~d~~i~i 311 (315)
+.+..+++.|
T Consensus 352 ai~~~kklei 361 (364)
T KOG0290|consen 352 AICFGKKLEI 361 (364)
T ss_pred EEEecCeeeE
Confidence 4444555544
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.6e-19 Score=144.50 Aligned_cols=266 Identities=22% Similarity=0.317 Sum_probs=185.5
Q ss_pred hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC--------C--------CcceeeccccccceEEEEeC
Q 021247 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPD--------D--------MQLERTNTGHCLGVVSVAAH 69 (315)
Q Consensus 6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~--------~--------~~~~~~~~~h~~~v~~~~~~ 69 (315)
..+++..|+..|++|.|+|.++ +|+||+.+|.|.+|... + ....+...+|...+..++|+
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~ge----lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGE----LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred EeecccCCcceeEEEEEcCCcC----eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence 4567889999999999999886 79999999999999754 2 12334567899999999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec---CC--
Q 021247 70 PSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS---IP-- 144 (315)
Q Consensus 70 ~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~-- 144 (315)
|++..+++++-|..+++||+..++....+..|...+..++|+|-+.+++ +-+.|...+.+.+...+.+.... .+
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~-s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVA-SKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhh-hhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 9999999999999999999999999999999999999999999988764 44566666666665433332221 00
Q ss_pred ---CCCCC--CCCccCCCCcceEEEEECCCCCEEEEecC----CCc-----EEEEEcc-cceeeeeecCCccceEEEEEc
Q 021247 145 ---RPEGL--KPTDKSSSKKFVLSVAWSPDGRRIACGSM----DGT-----ISVFDVT-RAKFLHHLEGHFMPVRSLVYS 209 (315)
Q Consensus 145 ---~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~-----i~i~d~~-~~~~~~~~~~~~~~v~~~~~~ 209 (315)
+.++. +......-+.+.+.++|+|+|..|++... ++. .++|+-. ..++...+..-..++..+.|+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 00110 00111123456778999999998887531 222 3444432 112333333333344444444
Q ss_pred CC---------C-------CcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 210 PV---------D-------PRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 210 ~~---------~-------~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
|. . -++.++......+++||.+.-..+... .-|-..|++++|+++|..|+..+.||...+-.+
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 31 0 122333344557999999886655543 458889999999999999999999999888776
Q ss_pred Cccc
Q 021247 273 NMRA 276 (315)
Q Consensus 273 ~~~~ 276 (315)
..++
T Consensus 372 e~~e 375 (434)
T KOG1009|consen 372 EPWE 375 (434)
T ss_pred cchh
Confidence 6543
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=2.2e-18 Score=136.58 Aligned_cols=234 Identities=15% Similarity=0.279 Sum_probs=172.1
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC-CeEEEEecCCcceeee
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS-ASVKLWDTATWNLIAT 140 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~ 140 (315)
.+..+.|+.+...|..|+.|| .++++................|.-+=|+. ..+++.+-.+ +.+++++.+....++.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEE
Confidence 455666888888888888888 67888776544222222223344444543 3444444333 4699999998888888
Q ss_pred ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC---ccceEEEEEcCCCCcEEE
Q 021247 141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH---FMPVRSLVYSPVDPRVLF 217 (315)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~ 217 (315)
+..+.+ |.++.++. +.|+++-++ .|+|||+...+.+.++..- ...+.++.+++.+..+..
T Consensus 84 ~~fpt~--------------IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 84 IFFPTS--------------ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred EecCCc--------------eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEe
Confidence 876554 78888875 466666554 4999999999988877643 223444444432223333
Q ss_pred EEe-CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCc-EEEEecCccceehcccccc--cceEEEEE
Q 021247 218 SAS-DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRT-VKLWDLNMRAAMQSMTNHT--DQVWGVSF 293 (315)
Q Consensus 218 s~~-~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~--~~v~~~~~ 293 (315)
-++ ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|||++..|+ ||||.+..|..+.++..-. ..|.+++|
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 333 4688999999999899999999999999999999999999999998 7999999998888775433 36789999
Q ss_pred eeCCCEEEEEeCCCcEEEeecC
Q 021247 294 RPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 294 s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+|++.+|++.|+.++|.||+++
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEec
Confidence 9999999999999999999874
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=5.3e-19 Score=141.16 Aligned_cols=244 Identities=18% Similarity=0.311 Sum_probs=175.9
Q ss_pred ceEEEEEeecCCCCCc----EEEEeeCCCcEEEEcCC-CCcce---eeccccccceEEEEeCCCC-CEEEEeeCCCeEEE
Q 021247 16 SVWAVTWVPATETRPA----LLLTGSLDETVKLWRPD-DMQLE---RTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRV 86 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~----~l~sgs~d~~v~~w~~~-~~~~~---~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~ 86 (315)
.|+.++|-..-...+. ++.=++..|...+.-.. ++++- -...||+++|..+.|+|-+ ..++|||.|.+|.|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v 108 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV 108 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence 5667777543222222 22223344444444322 22222 2346899999999999965 68899999999999
Q ss_pred EECCCCc-------eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 87 FDVDTNA-------SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 87 w~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
|++..+. .+..+.+|...|-.++|||....++++++.|.+|.+|++.+++.+-++. |.+
T Consensus 109 W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--------------hpd 174 (472)
T KOG0303|consen 109 WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--------------HPD 174 (472)
T ss_pred EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--------------CCC
Confidence 9987653 4567888999999999999998899999999999999999988765542 556
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCcc--ceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCe
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM--PVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~ 234 (315)
.|.++.|+.+|.+|++.+.|..|++||.++++.+..-.+|.+ +.+.+ |.. ++.++-+|. .++.+-+||...-+
T Consensus 175 ~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai-fl~-~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 175 MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI-FLA-SGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE-Eec-cCceeeeccccccccceeccCccccc
Confidence 799999999999999999999999999999998877777754 34444 433 444554443 47889999976543
Q ss_pred e---EEEeecccccEEEEEEcCCCCeE-EEEeCCCcEEEEecCccc
Q 021247 235 L---VTAMSGHASWVLSVDASPDGAAI-TTGSSDRTVKLWDLNMRA 276 (315)
Q Consensus 235 ~---~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~ 276 (315)
. ...+.. ++.|.=--++|+..++ +.|-.|+.||.|.+....
T Consensus 253 eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 253 EPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2 223332 3445444578887766 556679999999987654
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.7e-18 Score=130.06 Aligned_cols=238 Identities=17% Similarity=0.253 Sum_probs=175.9
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEECCCC----------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTN----------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW 130 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~ 130 (315)
..|.+-+++|.++++++|..+|+|-+..++.. ..+.....|..+++.++|+.+ ++++| +||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~-gdG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSG-GDGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeec-cCceEEEe
Confidence 34666788999999999999999999998642 133455788999999999843 44555 45999999
Q ss_pred ecCCcce------eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceE
Q 021247 131 DTATWNL------IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR 204 (315)
Q Consensus 131 d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~ 204 (315)
.-+.... +.....|...+ ...-..|+.|-+.|..+-++.++.|+.++.||+++++....+++|+..+.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVD------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred eehhhhhhccchhhhhhcCccccC------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 7654322 11111111111 11223488999998776666666999999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee---------cc-cccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 205 SLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS---------GH-ASWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 205 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~-~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
++.--... ..+++|+.||++++||.++++.++.+. .| ..||.+++.+.+ +|+. +..-.+.+|.+++
T Consensus 161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvC-GgGp~lslwhLrs 236 (325)
T KOG0649|consen 161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVC-GGGPKLSLWHLRS 236 (325)
T ss_pred eeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEe-cCCCceeEEeccC
Confidence 99874433 468899999999999999988776553 22 356888877654 6664 4566799999999
Q ss_pred cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
.++..+++- ...+..+.|-.+ .++++|....+.-|.++
T Consensus 237 se~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 237 SESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeec
Confidence 888877653 357778888765 78889888888877763
No 184
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.8e-20 Score=149.23 Aligned_cols=300 Identities=20% Similarity=0.250 Sum_probs=224.8
Q ss_pred ccchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-eeeccccccceEEEEeCCC--CCEEEEee
Q 021247 3 FAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-ERTNTGHCLGVVSVAAHPS--GIIAASAS 79 (315)
Q Consensus 3 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-~~~~~~h~~~v~~~~~~~~--g~~l~s~~ 79 (315)
.++++.-+..|.+.|+.|.|...+. .|+|||.|..|.+||....+. .....||..-|....|-|. ..-+++.+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd----~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGD----VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCc----eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence 3456667889999999999988775 699999999999999865543 3445789998888888774 36788899
Q ss_pred CCCeEEEEECCCCcee---EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247 80 LDSFVRVFDVDTNASI---ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156 (315)
Q Consensus 80 ~d~~i~~w~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
.||.+|+=.+.....+ ..+..|.++|..++..|...+-+.+++.|+.+.-+|++....-..+...+.. ..
T Consensus 207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~-------~~ 279 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD-------EK 279 (559)
T ss_pred ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC-------Cc
Confidence 9999998877654332 3456688999999999999888899999999999999876544333211110 01
Q ss_pred CCcceEEEEECCCC-CEEEEecCCCcEEEEEccccee------eeeecCC------ccceEEEEEcCCCCcEEEEEeCCC
Q 021247 157 SKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKF------LHHLEGH------FMPVRSLVYSPVDPRVLFSASDDT 223 (315)
Q Consensus 157 ~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~------~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~ 223 (315)
..-....++.+|.. +++++|+.|..+++||.+.-.. +.++..| .-.|+++.|+..++. |+++-.|-
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-lLaSYnDe 358 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-LLASYNDE 358 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-eeeeeccc
Confidence 11235788889854 4889999999999999764322 2222222 235789999974554 55555666
Q ss_pred eEEEEeCC--CC----------eeEEE-eecccc--cEEEEE-EcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247 224 HVHMYDAE--GK----------SLVTA-MSGHAS--WVLSVD-ASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 224 ~i~~wd~~--~~----------~~~~~-~~~~~~--~i~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
.|+++... .+ ..+.. +.+|.. .|-.+- |-|...++++|+.-|.|.||+-.+++.+.-+.+...-
T Consensus 359 ~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~V 438 (559)
T KOG1334|consen 359 DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHV 438 (559)
T ss_pred ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccce
Confidence 78888532 12 22223 677743 355555 5788899999999999999999999999989887779
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 288 VWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 288 v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|+++.=+|--..||+.|.|..|+||..
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecC
Confidence 999999999999999999999999964
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=149.88 Aligned_cols=209 Identities=19% Similarity=0.267 Sum_probs=162.2
Q ss_pred CCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247 29 RPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM 108 (315)
Q Consensus 29 ~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~ 108 (315)
....|+.++.||.+.+.+- ..+..+....|.+++.+-.|+|+|.-|++++.||.|++|.- ++....++.....+|.++
T Consensus 74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred CcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 3457899999999999863 56677888999999999999999999999999999999994 555555666677889999
Q ss_pred EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
+|.|+.+.++++.++. +.+=-+. .+.++..-..|...|.++.|++.++.+++|++|-..++||-
T Consensus 152 ~W~p~S~~vl~c~g~h--~~IKpL~-------------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~- 215 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGGH--ISIKPLA-------------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA- 215 (737)
T ss_pred EECCCCCceEEecCCe--EEEeecc-------------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-
Confidence 9999998887765533 3222211 12233334567778999999999999999999999999996
Q ss_pred cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEE
Q 021247 189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVK 268 (315)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~ 268 (315)
.|+.+..-..|..+|++++|.|+ ..++.++.. +++ .-....+.|..++||+||..++.|+..|.+.
T Consensus 216 ~G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 216 QGANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred cCcccccCChhccceeeeeeccc--cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 46667777789999999999994 444444432 333 1123467799999999999999999999765
Q ss_pred E
Q 021247 269 L 269 (315)
Q Consensus 269 i 269 (315)
+
T Consensus 282 ~ 282 (737)
T KOG1524|consen 282 V 282 (737)
T ss_pred E
Confidence 4
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-18 Score=138.14 Aligned_cols=286 Identities=19% Similarity=0.233 Sum_probs=200.4
Q ss_pred hhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC------cceeec-cccccceEEEEeCCCCCEEEEeeCCC
Q 021247 10 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM------QLERTN-TGHCLGVVSVAAHPSGIIAASASLDS 82 (315)
Q Consensus 10 ~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~------~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~d~ 82 (315)
+.+|.+.|+++.|+..+. .|++|+.|..+++|+++.. +.+... ..|..-|.++.|...+..+.+|+.++
T Consensus 52 ~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhccccceeeeccCCe----EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 579999999999998644 7999999999999987532 222222 23557899999999999999999999
Q ss_pred eEEEEECCCCceeEEeeCC--cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCc
Q 021247 83 FVRVFDVDTNASIATLEAS--PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
+|.+-|+++.+.+..+... .+.|+.+..+|..+.+ ++.+.++.|.+||.+... .+..+. + .....
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~-~~~t~~~~V~~~D~Rd~~~~~~~~~-~----------AN~~~ 195 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTL-IVVTRAKLVSFIDNRDRQNPISLVL-P----------ANSGK 195 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceE-EEEecCceEEEEeccCCCCCCceee-e----------cCCCc
Confidence 9999999998887665432 2489999999997754 566789999999998633 111110 0 00112
Q ss_pred ceEEEEECCCC-CEEEEecCCCcEEEEEccccee-eee------ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247 160 FVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKF-LHH------LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231 (315)
Q Consensus 160 ~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~-~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 231 (315)
...++-|+|.. .+|++.+..+.+-+||.+.... +.. +......-..+.|+|. +..+++--....-.+||.-
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC-CCeehhhhccCCCEEeeee
Confidence 25678899964 4677888889999999875432 111 1111223367789984 5556555555555667765
Q ss_pred CCeeEEEeeccc--c-----cEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----c-------------------eehcc
Q 021247 232 GKSLVTAMSGHA--S-----WVLSVDASPDGAAITTGSSDRTVKLWDLNMR----A-------------------AMQSM 281 (315)
Q Consensus 232 ~~~~~~~~~~~~--~-----~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~-------------------~~~~~ 281 (315)
...+...-..|+ + .+.+++|-.+ ..+++|+.+-.|++|.+... . .+..+
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 533322222222 2 2445666644 45899999999999987421 1 12345
Q ss_pred cccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 282 TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 282 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
.+|..-++.|.|+|...+|++.|-++.++||.
T Consensus 354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecccccccceeecCCcceEeccchhhheeccc
Confidence 78888899999999999999999999999996
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.6e-18 Score=150.41 Aligned_cols=235 Identities=21% Similarity=0.186 Sum_probs=159.6
Q ss_pred CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCC
Q 021247 39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT 115 (315)
Q Consensus 39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (315)
+..|.+||.+... .+.+..|...+.+..|+|+|+.++.++.+ ..|++||+.+++... +..........+|+|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence 4689999986554 34556677789999999999999877654 469999998875422 222223344689999999
Q ss_pred eEEEEecCCCeEEEE--ecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcccc-e
Q 021247 116 TLAVAGGGSASVKLW--DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRA-K 191 (315)
Q Consensus 116 ~~~~~~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~-~ 191 (315)
.++++...++.+.+| |+.+++.. .+. .+...+....|+|+|+.|+..+ .++...+|++... .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPS-QLT-------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeE-eec-------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 888776667765555 55544322 111 1122356789999999877554 5677888876432 1
Q ss_pred eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
....+ .+.. ....|+| +++.++..+.++ +.+||+.++........+ ....+.|+|+|++|+.++.++.+.+|+
T Consensus 327 ~~~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 327 GASLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CeEEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 12222 3332 3567898 555666666655 556998877544322222 234678999999999999999998887
Q ss_pred cC--ccceehcccccccceEEEEEeeC
Q 021247 272 LN--MRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 272 ~~--~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
+. .++....+..|.+.+...+|||-
T Consensus 400 ~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccCCCCCCCCcccCCC
Confidence 63 46667777788888899999985
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=143.84 Aligned_cols=263 Identities=16% Similarity=0.246 Sum_probs=184.8
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeecccccc-ceEEEE-------eCCCCCEEEEeeCCC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL-GVVSVA-------AHPSGIIAASASLDS 82 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~-~v~~~~-------~~~~g~~l~s~~~d~ 82 (315)
+.|.+.|-||.|+.... ++..+.|..+.+|.-..........-... -.+.+. -......++.++.||
T Consensus 11 ~r~~e~vc~v~w~~~ee-----i~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEE-----IYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred cccceeEEeecccccce-----EEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence 47888899999987543 56667777776665322221111110000 011111 112335778889999
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
.+.+.+- .++....+..|.+.+.+-+|+|+|.-+ ++.+.||.|++|.-..+ +..++ .+....|.
T Consensus 86 kf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgL-lt~GEDG~iKiWSrsGM-LRStl-------------~Q~~~~v~ 149 (737)
T KOG1524|consen 86 RFVILNK-SARVERSISAHAAAISSGRWSPDGAGL-LTAGEDGVIKIWSRSGM-LRSTV-------------VQNEESIR 149 (737)
T ss_pred eEEEecc-cchhhhhhhhhhhhhhhcccCCCCcee-eeecCCceEEEEeccch-HHHHH-------------hhcCceeE
Confidence 9998774 455566788899999999999999876 56789999999975421 11111 12334599
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH 242 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 242 (315)
|++|.|+++.++-+ ..+.+.|=.+..+..+-..+.|.+-|.++.|+| ...++++|+.|-..++||..+.. +.....|
T Consensus 150 c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~-Lf~S~~~ 226 (737)
T KOG1524|consen 150 CARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN-LFTSAAE 226 (737)
T ss_pred EEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc-cccCChh
Confidence 99999998776655 345777777777777778899999999999998 56799999999999999987653 4455678
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247 243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSIS 310 (315)
Q Consensus 243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 310 (315)
.-+|++++|+|+ ..++.++.+ +.| +. ....+.|..++|||||..++.|...|.+.
T Consensus 227 ey~ITSva~npd-~~~~v~S~n-t~R---------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSYN-TAR---------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ccceeeeeeccc-cceeeeeee-eee---------ec--CCCccceEEEEEcCCCceeeccccCceEE
Confidence 889999999999 555655532 222 11 12347899999999999999998888664
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=7.3e-19 Score=149.22 Aligned_cols=245 Identities=17% Similarity=0.315 Sum_probs=183.9
Q ss_pred chhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 5 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 5 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
++-..+++|.+.|+||+|+.+++ .++||+.|..|.+|++.-.... ...|.+.|.|+.|+|-.+.+++++-.. .
T Consensus 44 ~llqtLKgHKDtVycVAys~dGk----rFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsd-F 116 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSD-F 116 (1081)
T ss_pred ccccccccccceEEEEEEccCCc----eeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhh-c
Confidence 34456789999999999999887 6999999999999976533332 246999999999999999999987653 5
Q ss_pred EEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247 85 RVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164 (315)
Q Consensus 85 ~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (315)
-+|......... .+ ....+.+++|..+|.++ +-|..+|+|.+-+.. ++.. ..+.++. +...+|.++
T Consensus 117 glWS~~qK~V~K-~k-ss~R~~~CsWtnDGqyl-alG~~nGTIsiRNk~-gEek--~~I~Rpg--------g~Nspiwsi 182 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYL-ALGMFNGTISIRNKN-GEEK--VKIERPG--------GSNSPIWSI 182 (1081)
T ss_pred cccChhhhhHHh-hh-hheeEEEeeecCCCcEE-EEeccCceEEeecCC-CCcc--eEEeCCC--------CCCCCceEE
Confidence 678766543321 11 23568899999999876 457889999887432 2222 2222322 234569999
Q ss_pred EECCCC-----CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247 165 AWSPDG-----RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239 (315)
Q Consensus 165 ~~~~~~-----~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 239 (315)
+|+|.. ..+++.....++.+|.+. |+.+.+-+.-.....++.+.| ++.+++.|+.|+.+++|..+ +-.+.++
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~-GvrLGTv 259 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD-GVRLGTV 259 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEeec-CeEEeec
Confidence 999953 467777777788888874 555554444444567888887 78899999999999999644 4456666
Q ss_pred ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
.....||+.+...|++++++.|+.||+|-.|++.
T Consensus 260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 6678899999999999999999999999999874
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.3e-18 Score=138.93 Aligned_cols=209 Identities=22% Similarity=0.361 Sum_probs=157.6
Q ss_pred hhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-------eeeccccccceEEEEeCCCC-CEEEEee
Q 021247 8 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-------ERTNTGHCLGVVSVAAHPSG-IIAASAS 79 (315)
Q Consensus 8 ~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-------~~~~~~h~~~v~~~~~~~~g-~~l~s~~ 79 (315)
+...||+.+|..++|.|.... .|||||.|.+|.+|......+ ...+.||...|..+.|||.- +.|++++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~---vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDC---VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCccCccccccccccCccCCc---eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 446799999999999997653 799999999999998643322 45678999999999999976 6889999
Q ss_pred CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
.|.+|.+||+.++....+++ |++-|++++|+-+|+.+ ++...|..|+|||.++++.+..-..+. +.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l-~TtckDKkvRv~dpr~~~~v~e~~~he--G~k--------- 218 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL-CTTCKDKKVRVIDPRRGTVVSEGVAHE--GAK--------- 218 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee-eeecccceeEEEcCCCCcEeeeccccc--CCC---------
Confidence 99999999999999888888 99999999999999865 677899999999999988876542211 111
Q ss_pred ceEEEEECCCCCEEEEec---CCCcEEEEEcccce---eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247 160 FVLSVAWSPDGRRIACGS---MDGTISVFDVTRAK---FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK 233 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 233 (315)
-....|-.+|..+-+|. .+..+-+||..... ..+.+... ..|.--.|.|+..-+.++|-.|+.|+-|.....
T Consensus 219 -~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 219 -PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -cceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 22345666777555553 57789999875433 23344333 334444566644445566778999999998754
Q ss_pred e
Q 021247 234 S 234 (315)
Q Consensus 234 ~ 234 (315)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 3
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=4.3e-16 Score=123.78 Aligned_cols=239 Identities=18% Similarity=0.277 Sum_probs=170.2
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCce
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNAS 94 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~ 94 (315)
..++...|..+. ..|..|+.||. ++|+.+..............|..+-|+.+=--+++...-+.+++.+.+....
T Consensus 6 ~ti~~~~~Nqd~----~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 6 PTINFIGFNQDS----TLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred cceeeeeeccce----eEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce
Confidence 455556665433 35777777764 5666544332222222233455666655433333333335599999988877
Q ss_pred eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEE
Q 021247 95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIA 174 (315)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 174 (315)
+..+. .+.+|.++.++-+ .+++ +-. ..|.|||+++++.+.++...++ +...+..+..++.+.+++
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLvV-~Le-e~IyIydI~~MklLhTI~t~~~----------n~~gl~AlS~n~~n~ylA 145 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLVV-CLE-ESIYIYDIKDMKLLHTIETTPP----------NPKGLCALSPNNANCYLA 145 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEEE-EEc-ccEEEEecccceeehhhhccCC----------CccceEeeccCCCCceEE
Confidence 77665 4678999999865 3333 333 3599999999999988754322 112244555555666887
Q ss_pred E--ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCeeEEEeecc--cccEEEE
Q 021247 175 C--GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH-VHMYDAEGKSLVTAMSGH--ASWVLSV 249 (315)
Q Consensus 175 ~--~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~--~~~i~~~ 249 (315)
- ....|.|.+||+.+.+....+..|.+++.+++|++ ++.+|+++++.|+ |+||....++.+.+++-. ...|.++
T Consensus 146 yp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL 224 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL 224 (391)
T ss_pred ecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence 4 34678999999999999999999999999999998 7889999999988 699999999888877633 4558899
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 250 DASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 250 ~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
+|+|++++|++.+..++|.+|.+..
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999999999998853
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.3e-17 Score=121.07 Aligned_cols=270 Identities=16% Similarity=0.221 Sum_probs=186.0
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---------Cc-ceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---------MQ-LERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---------~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
..|++-+|+|... +|+.|+.+|.|-+..+.. ++ ......+|.+++..+.|+. ..|++++ ||.|
T Consensus 11 ~tvf~qa~sp~~~----~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V 83 (325)
T KOG0649|consen 11 NTVFAQAISPSKQ----YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLV 83 (325)
T ss_pred HHHHHHhhCCcce----EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceE
Confidence 5788889999765 799999999999997532 11 1223368999999999983 3566665 6999
Q ss_pred EEEECCCCce------eEE--eeC-----CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247 85 RVFDVDTNAS------IAT--LEA-----SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151 (315)
Q Consensus 85 ~~w~~~~~~~------~~~--~~~-----~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 151 (315)
+-|..+.... ... ... .-.+|+++-..|+.+.++++| +|+.+..||+++++....+.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r--------- 153 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR--------- 153 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc---------
Confidence 9998654321 000 111 124688999999988777665 89999999999998877663
Q ss_pred CccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC---------c-cceEEEEEcCCCCcEEEEEeC
Q 021247 152 TDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH---------F-MPVRSLVYSPVDPRVLFSASD 221 (315)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~---------~-~~v~~~~~~~~~~~~l~s~~~ 221 (315)
+|.+++.+++--.....+++|++||++++||+++++.+..+... . .-|.+++-+ ...+++| .
T Consensus 154 ----GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCG-g 225 (325)
T KOG0649|consen 154 ----GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCG-G 225 (325)
T ss_pred ----CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc---CceEEec-C
Confidence 57778989888666678999999999999999999887665422 1 124455433 3355444 4
Q ss_pred CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE-
Q 021247 222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV- 300 (315)
Q Consensus 222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l- 300 (315)
...+.+|+++..+....+. -...+..+.|..+ .+++++..+.|.-|.++ +..-...+.......+..++..--++
T Consensus 226 Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~ 301 (325)
T KOG0649|consen 226 GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFI 301 (325)
T ss_pred CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEE
Confidence 5679999999876655443 2344666777644 67888888899999886 33333344444556666666544444
Q ss_pred EEEeCCCcEEEee
Q 021247 301 VSVSDDKSISLYE 313 (315)
Q Consensus 301 ~s~~~d~~i~i~~ 313 (315)
-.+|....+.|+.
T Consensus 302 s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 302 SIAGFSNKLHILK 314 (325)
T ss_pred Eecccceeeeeee
Confidence 4566667776653
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.8e-18 Score=149.91 Aligned_cols=247 Identities=18% Similarity=0.297 Sum_probs=180.3
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc---ccEEEEEE-CCCCCeEEEEecCCCeEEEEecCCc--
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP---SEVWQMQF-DPKGTTLAVAGGGSASVKLWDTATW-- 135 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~v~~~~~-~~~~~~~~~~~~~d~~i~~~d~~~~-- 135 (315)
+...+.++|-...++++.....|++||.+.++.+..+..+. ..|..+.+ +.+...++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 35677889988899998878889999999999887776543 45777775 4445567788999999999975321
Q ss_pred ---ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCC
Q 021247 136 ---NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPV 211 (315)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~ 211 (315)
+++.-+.. -.+..+ .....-.-+.|..+..+|++++.-..|+|||.+..+....+. +....++++.-.-.
T Consensus 1146 ~~~eLVTaw~~--Ls~~~~----~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1146 KKPELVTAWSS--LSDQLP----GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred CCceeEEeecc--ccccCc----cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 11211110 001111 111111456788877778777778899999999888777664 34456777665555
Q ss_pred CCcEEEEEeCCCeEEEEeCCCC---eeEEEeeccccc--EEEEEEcCCCC-eEEEEeCCCcEEEEecCccce--ehcccc
Q 021247 212 DPRVLFSASDDTHVHMYDAEGK---SLVTAMSGHASW--VLSVDASPDGA-AITTGSSDRTVKLWDLNMRAA--MQSMTN 283 (315)
Q Consensus 212 ~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~--i~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~--~~~~~~ 283 (315)
++.++++|..||.+++||.+.. ..+.....|+.+ |..+.+.+.|- .|++|+.||.|++||++.... ..++..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 6789999999999999998743 456677888887 99999999764 499999999999999987422 223333
Q ss_pred cc--c-ceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 284 HT--D-QVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 284 ~~--~-~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
|. + .++++..|+....+|+|+. +.|+||+.+
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 33 3 5899999999999999999 999999864
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=135.64 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=153.4
Q ss_pred CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCC-CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247 73 IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151 (315)
Q Consensus 73 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 151 (315)
..++++-..|.||++|..+++.+..++.++..+..++|... +...+.+++.||+|++||+|.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence 56777778899999999999999999999999999998764 5567789999999999999986655444322111
Q ss_pred CccCCCCcceEEEEECCCCCEEEEecC----CCcEEEEEccccee-eeee-cCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247 152 TDKSSSKKFVLSVAWSPDGRRIACGSM----DGTISVFDVTRAKF-LHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHV 225 (315)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~----dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 225 (315)
..+..+++.+..++.+++|++ +..+.+||++..+. +..+ ..|...|+++.|+|.++.+|++|+.||.+
T Consensus 117 ------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 117 ------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred ------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 123667887777888888863 66799999987765 4433 46999999999999999999999999999
Q ss_pred EEEeCCCCee---EEEeecccccEEEEEEcCCC-CeEEEEeCCCcEEEEecCcccee
Q 021247 226 HMYDAEGKSL---VTAMSGHASWVLSVDASPDG-AAITTGSSDRTVKLWDLNMRAAM 278 (315)
Q Consensus 226 ~~wd~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~ 278 (315)
.+||++.... +...-.|...|..+.|..++ +.+.+-+..++..+|+++.+...
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999876421 22223466779999998876 34677788899999999877643
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=1.2e-17 Score=144.76 Aligned_cols=226 Identities=20% Similarity=0.279 Sum_probs=167.5
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (315)
+.+.+|++.........-....+|.++.|+|....++++|..+|+|.+||++........ ........|...+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------GLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------ccccccccCCcCe
Confidence 479999998874444444467789999999999999999999999999999875432100 0011234567778
Q ss_pred EEEEECCC--CCEEEEecCCCcEEEEEccccee-e-----eeec------CCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247 162 LSVAWSPD--GRRIACGSMDGTISVFDVTRAKF-L-----HHLE------GHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227 (315)
Q Consensus 162 ~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 227 (315)
..+.|-.+ +.-|++++.||.|..|+++.... . .... .....+++++|.+.++..++.|+++|.|..
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 89999764 34599999999999998753322 1 1111 122367899999999999999999999987
Q ss_pred EeCCCC--------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC-ccceehcccccccceEEEEEeeCCC
Q 021247 228 YDAEGK--------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN-MRAAMQSMTNHTDQVWGVSFRPLGG 298 (315)
Q Consensus 228 wd~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (315)
-..++. +....+..|.++|..+.++|=+..++..+.|.+|+||... ...++..+..+.+.+++++|||--.
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence 443322 1233556789999999999966555444449999999987 5667777777788899999999865
Q ss_pred E-EEEEeCCCcEEEeec
Q 021247 299 R-VVSVSDDKSISLYEY 314 (315)
Q Consensus 299 ~-l~s~~~d~~i~i~~~ 314 (315)
. ++++..||.|.|||+
T Consensus 455 avF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDL 471 (555)
T ss_pred eEEEEEcCCCceehhhh
Confidence 4 567778999999997
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=2.7e-17 Score=148.17 Aligned_cols=289 Identities=21% Similarity=0.243 Sum_probs=193.1
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcc-------eeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQL-------ERTNTGHCLGVVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~-------~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~ 83 (315)
.-|...|..++-++.+. .+|+|||.||+|++|+.....- .....-....+..+...+.|..+|.++.||.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~---s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT---SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred hhccccccceeecCCCC---ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 45778888888877542 4899999999999998643211 1111113456778888889999999999999
Q ss_pred EEEEECCCCc-------eeEEeeC-CcccEEEE-EECCC-CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc
Q 021247 84 VRVFDVDTNA-------SIATLEA-SPSEVWQM-QFDPK-GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD 153 (315)
Q Consensus 84 i~~w~~~~~~-------~~~~~~~-~~~~v~~~-~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (315)
|++.+++-.. ....... ..+.+..| ++... ....++.+...+.|..||++.......+..+..
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------- 1194 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------- 1194 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------
Confidence 9999987621 1111111 22333333 23222 223556667788999999987655554433222
Q ss_pred cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCCCC--cEEEEEe--CCCeEEEE
Q 021247 154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPVDP--RVLFSAS--DDTHVHMY 228 (315)
Q Consensus 154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~--~d~~i~~w 228 (315)
.+.|++++.+|.+++++.|+..|.+.+||++-+.++.... .+..+++.+..+|..+ ...++++ ..+.|-+|
T Consensus 1195 ----hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 ----HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ----ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 3459999999999999999999999999999887777664 3456788887777655 5555555 46789999
Q ss_pred eCCCCeeEEEeecc-------------------cccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee-----------
Q 021247 229 DAEGKSLVTAMSGH-------------------ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM----------- 278 (315)
Q Consensus 229 d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------- 278 (315)
++.++.....+..- .-......+...+..+.+|+.|..||.||...-+..
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence 99877443332211 001111223334568899999999999996421110
Q ss_pred ------------------hc---------------------------ccccccceEEEEEeeC-CCEEEEEeCCCcEEEe
Q 021247 279 ------------------QS---------------------------MTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLY 312 (315)
Q Consensus 279 ------------------~~---------------------------~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~ 312 (315)
.. -..|.++|+++++-.. ..+|++++.||.|+||
T Consensus 1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 00 0235667887776544 3578999999999999
Q ss_pred e
Q 021247 313 E 313 (315)
Q Consensus 313 ~ 313 (315)
+
T Consensus 1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred C
Confidence 5
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=3e-16 Score=132.16 Aligned_cols=244 Identities=14% Similarity=0.189 Sum_probs=156.1
Q ss_pred cceEEEEEeecCCCCCcEEEEe-eCCCcEEEEcCC-CCcce--eeccccccceEEEEeCCCCCEEEEee-CCCeEEEEEC
Q 021247 15 ESVWAVTWVPATETRPALLLTG-SLDETVKLWRPD-DMQLE--RTNTGHCLGVVSVAAHPSGIIAASAS-LDSFVRVFDV 89 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sg-s~d~~v~~w~~~-~~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~i~~w~~ 89 (315)
.....++++|+.+ +|+++ ..++.|.+|+.+ +.++. .... .......+.++|+|+++++++ .++.|.+|++
T Consensus 35 ~~~~~l~~spd~~----~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~ 109 (330)
T PRK11028 35 GQVQPMVISPDKR----HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPL 109 (330)
T ss_pred CCCccEEECCCCC----EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEE
Confidence 4566778888664 45555 458899999876 23321 1111 223467899999999887765 4889999999
Q ss_pred CCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEE
Q 021247 90 DTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 90 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (315)
++.. .+..+. +......++++|+++.++++...++.|.+||+.+...+.... ...... ........++
T Consensus 110 ~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~------~~g~~p~~~~ 181 (330)
T PRK11028 110 DKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTT------VEGAGPRHMV 181 (330)
T ss_pred CCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceec------CCCCCCceEE
Confidence 7432 222222 223456788999999998888889999999997632221000 000000 0011246789
Q ss_pred ECCCCCEEEEecC-CCcEEEEEccc--c--eeeeeecCC------ccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCC
Q 021247 166 WSPDGRRIACGSM-DGTISVFDVTR--A--KFLHHLEGH------FMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGK 233 (315)
Q Consensus 166 ~~~~~~~l~~~s~-dg~i~i~d~~~--~--~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~ 233 (315)
|+|+|+++++... ++.|.+||+.. + +.+..+..+ ......+.++| ++++++++ ..++.|.+|++...
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence 9999999977765 89999999963 2 223333221 11223588998 45566555 45789999998543
Q ss_pred e----eEEEeecccccEEEEEEcCCCCeEEEEeC-CCcEEEEecC
Q 021247 234 S----LVTAMSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDLN 273 (315)
Q Consensus 234 ~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~ 273 (315)
. .+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus 261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2 2222221 124567899999999887765 8999999875
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.1e-18 Score=142.29 Aligned_cols=246 Identities=20% Similarity=0.282 Sum_probs=164.1
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccccccceEEEEeCCC--CCEEEEeeC
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTGHCLGVVSVAAHPS--GIIAASASL 80 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~h~~~v~~~~~~~~--g~~l~s~~~ 80 (315)
.+++..+.||++-|+|++|...+. +|++||.|-.+.+||+...++... -.||..-|.++.|-|. ..++++|+.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGE----LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred cchhhhhccccceecceeecCCCC----EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 456778899999999999998775 899999999999999987776655 4689999999999884 468899999
Q ss_pred CCeEEEEECCCC----------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247 81 DSFVRVFDVDTN----------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150 (315)
Q Consensus 81 d~~i~~w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (315)
|..|+++|+... .....+..|...|..++..|.+...+.+++.||+++.||++..... + ..++..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c---~--p~~~~~ 190 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC---N--PDEDCP 190 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC---C--cccccc
Confidence 999999999852 2233455677888889999999888899999999999999852110 0 000000
Q ss_pred CCccCCC--CcceEEEEECCC-CCEEEEecCCCcEEEEEccccee-eeeecCCcc----ceEEEE-EcCCCCcEEEEEeC
Q 021247 151 PTDKSSS--KKFVLSVAWSPD-GRRIACGSMDGTISVFDVTRAKF-LHHLEGHFM----PVRSLV-YSPVDPRVLFSASD 221 (315)
Q Consensus 151 ~~~~~~~--~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~----~v~~~~-~~~~~~~~l~s~~~ 221 (315)
.....-+ .-...++..+|. ..+|++|+.|...++||.+.... ...-..++. +.+++. |+| +. + ...
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p-~h--l--kn~ 265 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP-GH--L--KNS 265 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC-cc--c--cCc
Confidence 0000001 112468899995 56889999999999999643221 111011111 111111 222 10 0 001
Q ss_pred CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247 222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA 277 (315)
Q Consensus 222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 277 (315)
++ ..... .-.++-+.|+|+|.-|+..=....|+++|++.++.
T Consensus 266 ~g----------n~~~~----~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 266 QG----------NLDRY----ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred cc----------ccccc----eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 11 01111 11256788999998766666666799999987654
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8e-18 Score=135.60 Aligned_cols=199 Identities=28% Similarity=0.351 Sum_probs=146.3
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247 18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT 97 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~ 97 (315)
-+|+|.+++. .+++|+.||++|+|+............|...|.++.|+|||+.|++.+.| ..+||+++++..+..
T Consensus 148 k~vaf~~~gs----~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGS----KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCC----EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 5788887654 69999999999999966666666677899999999999999999999999 899999999976665
Q ss_pred eeC--CcccEEEEEECCCC---CeEEEEe-cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 98 LEA--SPSEVWQMQFDPKG---TTLAVAG-GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 98 ~~~--~~~~v~~~~~~~~~---~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
... .+.....++|..++ ...+++. ..-+.|+.||+..++.-..+... ........|++++.+++|+
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~--------~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR--------KKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh--------hhhhccCcceeEEEcCCCc
Confidence 542 22334566676554 3333332 33456777776543321111110 0011122489999999999
Q ss_pred EEEEecCCCcEEEEEcccceeeeee-cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247 172 RIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 230 (315)
+++.|+.||.|-+++..+.+.++.. +.|...|+.+.|+| +.+++++-+.|..+.+..+
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence 9999999999999999888777665 46899999999999 6778888887777666543
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.5e-17 Score=143.00 Aligned_cols=211 Identities=20% Similarity=0.206 Sum_probs=143.3
Q ss_pred CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 81 DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
+..|++||..... ...+..+...+...+|+|+|+.++++... +.+|.+||+.+++.......+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-------------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-------------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--------------
Confidence 4689999986554 45555667789999999999988766533 347999999876533221111
Q ss_pred cceEEEEECCCCCEEEEec-CCCcEEE--EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CC
Q 021247 159 KFVLSVAWSPDGRRIACGS-MDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GK 233 (315)
Q Consensus 159 ~~i~~~~~~~~~~~l~~~s-~dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~ 233 (315)
......+|+|||+.|+.++ .+|.+.+ ||+.++. ...+..+...+....|+|++..+++++..++...+|++. ++
T Consensus 248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 1133679999999887754 6776555 5665554 344556666778899999655455565567777887754 33
Q ss_pred eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
.. ..+ .+.. ....|+|+|+.|+..+.++ +.+||+.+++.......+ ...++.|+|+|++|+.++.++.+.+|.
T Consensus 327 ~~-~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 327 GA-SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred Ce-EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 22 222 3333 4578999999998887765 556999877543222222 235678999999999999999888876
Q ss_pred c
Q 021247 314 Y 314 (315)
Q Consensus 314 ~ 314 (315)
+
T Consensus 400 ~ 400 (429)
T PRK01742 400 L 400 (429)
T ss_pred E
Confidence 4
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=2.8e-16 Score=122.49 Aligned_cols=235 Identities=20% Similarity=0.287 Sum_probs=160.0
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC------CeEEEEecCCc
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS------ASVKLWDTATW 135 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~ 135 (315)
...+++|+-|..=++.|..+ -.|+++.+.-+.....+.....+.-+..--..+++++.||.. ..+.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 44568888877666666554 499999987544322222222121122222345666777665 57999996655
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc-cceeeeeecCCccceEEEEEcCC-CC
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT-RAKFLHHLEGHFMPVRSLVYSPV-DP 213 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~-~~ 213 (315)
+++.++... ..|..+.+.++ .+++. .++.|++|... ..+.+..+.....|=--++..|. +.
T Consensus 86 ~~i~el~f~--------------~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 86 RCIIELSFN--------------SEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred cEEEEEEec--------------cceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 555555432 23888888764 45444 56789999876 44444444332222223334443 33
Q ss_pred cEEEE-EeCCCeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCCc-EEEEecCccceehccccc--ccc
Q 021247 214 RVLFS-ASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRT-VKLWDLNMRAAMQSMTNH--TDQ 287 (315)
Q Consensus 214 ~~l~s-~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~--~~~ 287 (315)
.+|+. |-.-|.|.+-|+...+. ...+..|...|.+++++-+|..+||++..|+ |||||..+++++.++..- ...
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 34443 33468999999875443 4677899999999999999999999999999 899999999998877542 357
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 288 VWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 288 v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|.+++|||+..+|+..|+.||+.||.+
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 999999999999999999999999975
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.79 E-value=2.6e-15 Score=126.63 Aligned_cols=274 Identities=19% Similarity=0.204 Sum_probs=177.5
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD 111 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~ 111 (315)
++++-..++.|.+.|.++.+....+......-..+.++|+|+++..++.|+.|.++|+.+.+.+.+++.... ...++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s 86 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVS 86 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEc
Confidence 345666789999999999888887765444445678999999999999999999999999999998887654 5679999
Q ss_pred CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccc
Q 021247 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRA 190 (315)
Q Consensus 112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~ 190 (315)
++|+++++++...+++.++|.++.+.+..+........ ....++..+.-+|....++.. -..+.|.+.|....
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred CCCCEEEEEecCCCceeEeccccccceeeccccccccc------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999998888899999999999999888754322110 023346778778887755554 45588988887655
Q ss_pred eee--eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee----------------------------
Q 021247 191 KFL--HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS---------------------------- 240 (315)
Q Consensus 191 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------------------------- 240 (315)
+.+ ..+. .........|.|++..++++...+..|-++|.++++++..+.
T Consensus 161 ~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 161 KNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred cccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 432 2222 233456788998544445555667788888887665443211
Q ss_pred ---------------------------cccccEEEEEEcCCCCeEEEE----eCCCcEEEEecCccceehcccccc-cce
Q 021247 241 ---------------------------GHASWVLSVDASPDGAAITTG----SSDRTVKLWDLNMRAAMQSMTNHT-DQV 288 (315)
Q Consensus 241 ---------------------------~~~~~i~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~-~~v 288 (315)
...+. .-+..+|+++++.+. ...++|.++|.++.+...++.... ..+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~ 318 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV 318 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE
Confidence 00111 235668999999887 445889999999987776664322 358
Q ss_pred EEEEEeeCCCEE-EEEeCCC-cEEEeec
Q 021247 289 WGVSFRPLGGRV-VSVSDDK-SISLYEY 314 (315)
Q Consensus 289 ~~~~~s~~~~~l-~s~~~d~-~i~i~~~ 314 (315)
..+.|+++|+++ +|.-+++ .|.|||-
T Consensus 319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 319 VHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 899999999987 4544444 7999984
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.9e-18 Score=135.05 Aligned_cols=200 Identities=23% Similarity=0.290 Sum_probs=142.0
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247 64 VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143 (315)
Q Consensus 64 ~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 143 (315)
..++|+++|..+++++.||++|+|+......+.....|..+|.++.|+|+++.++ +-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~la-sig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLA-SIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEE-EecCC-ceEEEEeccCchhhhcCC
Confidence 5789999999999999999999999877777777777889999999999998664 55566 999999998755543321
Q ss_pred CCCCCCCCCccCCCCcceEEEEECCCC---CEE-E-EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE
Q 021247 144 PRPEGLKPTDKSSSKKFVLSVAWSPDG---RRI-A-CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218 (315)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l-~-~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 218 (315)
......+..|.|+.++ .++ + .-...+.|+.||+
T Consensus 226 -----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~------------------------------- 263 (398)
T KOG0771|consen 226 -----------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI------------------------------- 263 (398)
T ss_pred -----------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-------------------------------
Confidence 1112235566776654 111 1 1122223333332
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCC
Q 021247 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLG 297 (315)
Q Consensus 219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~ 297 (315)
.+|+....-...+.......|.+++++++|++++.|+.||.|.|++..+.+.++-. ..|...|+++.|+|+.
T Consensus 264 -------~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds 336 (398)
T KOG0771|consen 264 -------SLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS 336 (398)
T ss_pred -------eeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc
Confidence 22222100000111122345899999999999999999999999999876655443 4689999999999999
Q ss_pred CEEEEEeCCCcEEEeec
Q 021247 298 GRVVSVSDDKSISLYEY 314 (315)
Q Consensus 298 ~~l~s~~~d~~i~i~~~ 314 (315)
+++++.+.|.++.|..+
T Consensus 337 r~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 337 RYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcccccccCCceeEEEE
Confidence 99999999999988765
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.9e-17 Score=129.72 Aligned_cols=247 Identities=15% Similarity=0.170 Sum_probs=180.4
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC------ceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCe
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN------ASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSAS 126 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~ 126 (315)
+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++.. +++..... |...|.+++|+.. +.++++|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcce
Confidence 345689999999999999999999999999999998642 34444333 3478999999865 456789999999
Q ss_pred EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeee--cCCccce
Q 021247 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHL--EGHFMPV 203 (315)
Q Consensus 127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~--~~~~~~v 203 (315)
|.+.|+.+.+.+..+.-. .....|..+..+|..+.|++.+.++.|.+||.+... ...-+ -......
T Consensus 129 VI~HDiEt~qsi~V~~~~-----------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN-----------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eEeeecccceeeeeeccc-----------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 999999987766555321 123348889999999999999999999999987544 22221 1223456
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEE------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc
Q 021247 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTA------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA 276 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 276 (315)
..+.|+|..+.+|++.+.-+-+-+||.+... .+.+ +......-+++.|+|+|..|++--....=.+||+-+.+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 7888999999999999999999999987532 1211 11112223567899999988877666666678886633
Q ss_pred e-ehcccccc-------cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 277 A-MQSMTNHT-------DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 277 ~-~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+ +..+ .|. ..+.++.|-.+- .+++|+++=.|.+|.+
T Consensus 278 ~~V~k~-D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 278 CFVLKS-DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKL 321 (609)
T ss_pred ceeEec-cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEec
Confidence 3 3222 232 246677887664 4999999999999986
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.4e-16 Score=134.42 Aligned_cols=276 Identities=18% Similarity=0.200 Sum_probs=185.8
Q ss_pred EEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC---CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247 33 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG---IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109 (315)
Q Consensus 33 l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g---~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~ 109 (315)
.+-+..+..|++|...++++...+.+|..++.++.+.|.. .++.+.+.||+|++||...+..++++..+ .++..+.
T Consensus 30 ~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~ 108 (792)
T KOG1963|consen 30 FLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALV 108 (792)
T ss_pred EEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEE
Confidence 4445667899999999999999999999999999987754 46779999999999999999888887654 3344444
Q ss_pred ECCCC---CeEEEEecCCCeE-EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247 110 FDPKG---TTLAVAGGGSASV-KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185 (315)
Q Consensus 110 ~~~~~---~~~~~~~~~d~~i-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~ 185 (315)
+.|.- ...+..+..+..+ ........+....+.+......+......+.. -.++.+++.|+..+...+ ..+.+|
T Consensus 109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~ 186 (792)
T KOG1963|consen 109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIY 186 (792)
T ss_pred echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEE
Confidence 43311 1122222222111 11111111111111111110000000011111 356788888877766654 467788
Q ss_pred Ecccceee----eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEEeecccccEEEEEEcCCCCe
Q 021247 186 DVTRAKFL----HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK----SLVTAMSGHASWVLSVDASPDGAA 257 (315)
Q Consensus 186 d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~ 257 (315)
........ ..-..|...+++.+++| ++++++++..||.|.+|.--+. .....+.=|...|++++|+++|.+
T Consensus 187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~ 265 (792)
T KOG1963|consen 187 FVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY 265 (792)
T ss_pred EecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence 77654311 11134777789999999 7889999999999999974431 112233447889999999999999
Q ss_pred EEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 258 ITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 258 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
|++||..+.+.+|.+.+++ .+-++.-..+|..+.+|||+.+.+...+|..|.+-.
T Consensus 266 LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred EeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 9999999999999999876 333455668999999999999999999999998754
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=6.3e-16 Score=123.65 Aligned_cols=273 Identities=12% Similarity=0.212 Sum_probs=193.6
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec------cccccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN------TGHCLGVVSVAAHPSGIIAASASLDSFVRV 86 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~------~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~ 86 (315)
-.+.|..++|..+++. .++...+.|..+..+......+.... ..-..+|..+.. .+| .|+++-.+|.+++
T Consensus 54 ~~~ris~l~~~~d~~t--evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg-~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGET--EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADG-TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCce--eEeeccccCcccccccccCCccccccccccccccccccccchhh-cCC-EEEEEecCCcEEE
Confidence 3557888888865542 35555557777776665554443322 222334444433 234 5566677899999
Q ss_pred EECCCCc----eeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 87 FDVDTNA----SIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 87 w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
|..+.+. ....+..+ ..+..|.-+|...+++++|+.. ..+.+||+.+.+.+..-...+...+. -.-.-+
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~----LrVPvW 204 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG----LRVPVW 204 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc----ceeeee
Confidence 9988543 22233322 4567777788888898889988 88999999987666544322211110 011345
Q ss_pred eEEEEECCC--CCEEEEecCCCcEEEEEcccce-eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 021247 161 VLSVAWSPD--GRRIACGSMDGTISVFDVTRAK-FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT 237 (315)
Q Consensus 161 i~~~~~~~~--~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 237 (315)
++.+.|-+. .+.|++++.-+.+++||.+.++ ++..+.-.+.++.++...| .+..+++|..-+.+..||.+++.+..
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeec
Confidence 788999886 7899999999999999998654 5566666677899999998 67889999999999999999988776
Q ss_pred E-eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247 238 A-MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 238 ~-~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
. +.+..+.|.++..+|.+++++++|-|+.|||+|+.++++++.. .-...++.+.+.++
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD 342 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence 5 7888999999999999999999999999999999997665542 22345566666554
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=136.08 Aligned_cols=255 Identities=18% Similarity=0.287 Sum_probs=194.0
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-Ccc--eeeccccccceEEEEeCCCC-CEEEEeeCCCeE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-MQL--ERTNTGHCLGVVSVAAHPSG-IIAASASLDSFV 84 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-~~~--~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i 84 (315)
+..+|...|+.-.|.|.... ..+++.+.||.|++=.... ..+ .+.+..|.++|..++..|+. ..|.+++.|+.+
T Consensus 180 f~SGH~~NvfQaKFiP~s~d--~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v 257 (559)
T KOG1334|consen 180 FESGHCNNVFQAKFIPFSGD--RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV 257 (559)
T ss_pred cccccccchhhhhccCCCCC--cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccce
Confidence 34699999999999997643 3689999999998776432 222 34566799999999999876 678899999999
Q ss_pred EEEECCCCceeE---EeeCCcc---cEEEEEECCCCCeEEEEecCCCeEEEEecCCccee------eeecCCCCCCCCCC
Q 021247 85 RVFDVDTNASIA---TLEASPS---EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI------ATLSIPRPEGLKPT 152 (315)
Q Consensus 85 ~~w~~~~~~~~~---~~~~~~~---~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~ 152 (315)
.-+|+..+.... +-+.+.. ....++.+|...+.+++++.|..+++||.+....- .++..+ .
T Consensus 258 ~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-------h 330 (559)
T KOG1334|consen 258 FHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-------H 330 (559)
T ss_pred eeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc-------c
Confidence 999998765432 2233333 46788899999888889999999999998763321 111110 0
Q ss_pred ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc------------eeeee-ecCCcc--ceEEEEEcCCCCcEEE
Q 021247 153 DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA------------KFLHH-LEGHFM--PVRSLVYSPVDPRVLF 217 (315)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~------------~~~~~-~~~~~~--~v~~~~~~~~~~~~l~ 217 (315)
......-.|++++|+.++.-|+++..|-.|+++.-..+ ..... +++|.. .|..+.|.-....+++
T Consensus 331 l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv 410 (559)
T KOG1334|consen 331 LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV 410 (559)
T ss_pred ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEE
Confidence 11122334899999998888888889999999954322 12222 567743 4777777655788999
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 218 s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
+|++-|+|.+|+.++++++..+.+...-|+||.-+|.-.+||+.|-|..|+||--
T Consensus 411 SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 411 SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 9999999999999999999888877678999999999999999999999999965
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=8.5e-18 Score=137.00 Aligned_cols=231 Identities=16% Similarity=0.219 Sum_probs=184.5
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT 140 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 140 (315)
.+...+.++.+|..++.++..|.+-.+|..+......+.. ...|.++.|-.+..++++ .....+.+||-.. ..+.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AV--AQK~y~yvYD~~G-tElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAV--AQKKYVYVYDNNG-TELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHh--hhhceEEEecCCC-cEEee
Confidence 3567888999999999999999999999999877666543 345778888766665543 3567899999653 22222
Q ss_pred ecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe
Q 021247 141 LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS 220 (315)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 220 (315)
+. ....+..+.|-|-.-+|++++..|.++.-|+.+|+.+..+....+.+..+.-+|.+ ..+-.|.
T Consensus 206 lk--------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~Gh 270 (545)
T KOG1272|consen 206 LK--------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGH 270 (545)
T ss_pred hh--------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcC
Confidence 21 11236788899988889999999999999999999999888888888888888854 4788899
Q ss_pred CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEE
Q 021247 221 DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV 300 (315)
Q Consensus 221 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 300 (315)
..|+|.+|.....+.+..+..|.++|.++++.++|++++|.|.|+.++|||++....++++.. .-+...+++|-.| +
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--l 347 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--L 347 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--c
Confidence 999999999999988888899999999999999999999999999999999998776665543 2456678888654 5
Q ss_pred EEEeCCCcEEEee
Q 021247 301 VSVSDDKSISLYE 313 (315)
Q Consensus 301 ~s~~~d~~i~i~~ 313 (315)
+++|...-+.||.
T Consensus 348 LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 348 LALSYGDHVQIWK 360 (545)
T ss_pred eeeecCCeeeeeh
Confidence 5666666777774
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=5.1e-15 Score=128.42 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=153.8
Q ss_pred cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee---CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247 41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS---LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL 117 (315)
Q Consensus 41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (315)
.|.++|.+.... +.+..+...+.+..|+|+|+.|+..+ .+..+++|++.+++... +......+...+|+|+|+.+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence 688888765543 33334556789999999999887543 24579999998875433 22233345568999999988
Q ss_pred EEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-C--cEEEEEccccee
Q 021247 118 AVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-G--TISVFDVTRAKF 192 (315)
Q Consensus 118 ~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-g--~i~i~d~~~~~~ 192 (315)
+++...++ .|.+||+.+++...... ....+....|+|+|+.|+..+.+ + .|+.+|+.+++.
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~--------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTD--------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccC--------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 87655444 58889998765432211 11125678999999988776654 3 455557765543
Q ss_pred eeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCc---E
Q 021247 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRT---V 267 (315)
Q Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~---i 267 (315)
..+..+........|+|++..+++++..+ ..|.+||+.++.... +... .......|+|||+.|+.++.++. +
T Consensus 324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 23333333455688999544444444333 458889988775432 2221 12345789999999988888765 6
Q ss_pred EEEecCccceehcccccccceEEEEEeeC
Q 021247 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
.+++++ ++....+..|.+.+...+|+|-
T Consensus 401 ~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 667774 4445556677788888899873
No 210
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.73 E-value=9.7e-14 Score=117.18 Aligned_cols=282 Identities=19% Similarity=0.275 Sum_probs=178.3
Q ss_pred EEEeeCC----CcEEEEcC--CCCcceeec-cccccceEEEEeCCCCCEEEEeeC----CCeEEEEECCCC--c--eeEE
Q 021247 33 LLTGSLD----ETVKLWRP--DDMQLERTN-TGHCLGVVSVAAHPSGIIAASASL----DSFVRVFDVDTN--A--SIAT 97 (315)
Q Consensus 33 l~sgs~d----~~v~~w~~--~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~~~----d~~i~~w~~~~~--~--~~~~ 97 (315)
++.|+.+ +.|..|++ ++.++.... ..-......+.++|++.+|.++.. ++.|..|.+... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5667766 68888877 344443221 112334567889999999988866 578999988775 2 2333
Q ss_pred eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe
Q 021247 98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176 (315)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 176 (315)
..........++++|++++++++.-.++.+.++++.. +.+..........+..+....+......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3333445567899999999998888899999999976 333222111100011111112233447789999999988765
Q ss_pred c-CCCcEEEEEcccce--ee--eeec-CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCee--EEEeec-----
Q 021247 177 S-MDGTISVFDVTRAK--FL--HHLE-GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GKSL--VTAMSG----- 241 (315)
Q Consensus 177 s-~dg~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~--~~~~~~----- 241 (315)
. ....|.+|++.... .. ..+. ......+.+.|+|++..+++..-.++.|.+|+.. .+.+ +.....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 3 34479999986544 21 2222 2334568999999666666777778999999877 4322 222221
Q ss_pred -ccccEEEEEEcCCCCeEEEEe-CCCcEEEEecCc--cc--eehcccccccceEEEEEeeCCCEEEEEe-CCCcEEEeec
Q 021247 242 -HASWVLSVDASPDGAAITTGS-SDRTVKLWDLNM--RA--AMQSMTNHTDQVWGVSFRPLGGRVVSVS-DDKSISLYEY 314 (315)
Q Consensus 242 -~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~ 314 (315)
.......+.++|+|++|.++. ..+.|.+|+++. ++ .+..+.......+.++++|+|++|+.+. .+++|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 122578899999999876554 567799999942 22 2333333345689999999999998666 5689999976
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=2.7e-15 Score=135.53 Aligned_cols=263 Identities=16% Similarity=0.148 Sum_probs=177.0
Q ss_pred EcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCe
Q 021247 45 WRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTT 116 (315)
Q Consensus 45 w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 116 (315)
|++ .+.+...+..|...+..++.++.. .++++||.||+||+||+..- ++..++......+..+...+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 544 344566677888899998887655 99999999999999998642 233455555678888999888888
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-C-CEEEEecCCCcEEEEEcccceeee
Q 021247 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-G-RRIACGSMDGTISVFDVTRAKFLH 194 (315)
Q Consensus 117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~l~~~s~dg~i~i~d~~~~~~~~ 194 (315)
++++ +.||.|.+.++...+..+.... ....+..+. ....+..-++... + ..++.++..+.|..||++......
T Consensus 1113 ~Av~-t~DG~v~~~~id~~~~~~~~~~---~~ri~n~~~-~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1113 FAVS-TKDGSVRVLRIDHYNVSKRVAT---QVRIPNLKK-DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred EEEE-cCCCeEEEEEccccccccceee---eeecccccC-CCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 7654 8999999999876322111100 000111111 1112333344332 3 377888999999999997655433
Q ss_pred ee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCC---CeEEEE-e-CCCc
Q 021247 195 HL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDG---AAITTG-S-SDRT 266 (315)
Q Consensus 195 ~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~---~~l~s~-~-~d~~ 266 (315)
.+ ....+.|++++.+| .+.+++.|+..|.+.+||++-+.++.... ++..+|+.+..+|-. ...+++ . ..+.
T Consensus 1188 ~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 32 33457899999998 67799999999999999999877666543 445788888887742 344444 3 5788
Q ss_pred EEEEecCccceehcccc-------------------cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 267 VKLWDLNMRAAMQSMTN-------------------HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 267 i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|.+|++..+....++-. +.-....+.+...+..+.+++.|..||.||.
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 99999987643322211 1112223344444668899999999999996
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3e-14 Score=113.19 Aligned_cols=283 Identities=17% Similarity=0.232 Sum_probs=181.9
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA 93 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~ 93 (315)
+-.+-.++|.+-.. .++++..|.+|++|+-......+...-....|.+++|-|.+..-++.+..+.|-+|......
T Consensus 98 ~~dlr~~aWhqH~~----~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII----AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhh----hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 44678899988433 48999999999999865432222222334579999999977555555556669999875432
Q ss_pred ee------------EEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 94 SI------------ATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 94 ~~------------~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
.. +.++ ....+|.+++|+++|..++-+.-++..|.+||..++..+..... ....
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-------------glgg 240 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-------------GLGG 240 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-------------CCCc
Confidence 11 1111 12268999999999998776667789999999987654432210 1123
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe--CCCCe----
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD--AEGKS---- 234 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd--~~~~~---- 234 (315)
++-+.|+|||.+|++++-|+..++|+..+...........+.|....|+|.+..+|++.+..-.++--. -+...
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence 778999999999999999999999976544444444444558899999997777788887776655332 21111
Q ss_pred -------eEEEee------c---ccccEEEEEEcCCCCeEEEEeCCCc--------EEEEecCccceehcc----ccccc
Q 021247 235 -------LVTAMS------G---HASWVLSVDASPDGAAITTGSSDRT--------VKLWDLNMRAAMQSM----TNHTD 286 (315)
Q Consensus 235 -------~~~~~~------~---~~~~i~~~~~~~~~~~l~s~~~d~~--------i~iwd~~~~~~~~~~----~~~~~ 286 (315)
++..+. + -.+.+.+++|+|.|.+|++.-+.+. |.+||.+.-..+.-. .+ .+
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge 399 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GE 399 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CC
Confidence 111111 1 1467889999999999988765543 566776543322211 11 11
Q ss_pred ceEEEEEeeC---CCEEEEEeCCCcEEEeec
Q 021247 287 QVWGVSFRPL---GGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 287 ~v~~~~~s~~---~~~l~s~~~d~~i~i~~~ 314 (315)
...-+.|+|- |..|..+=..|.|.-|++
T Consensus 400 ~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 400 YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 2334566653 444444445577776654
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.3e-16 Score=131.36 Aligned_cols=177 Identities=22% Similarity=0.298 Sum_probs=132.7
Q ss_pred ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEe-eCCcccEEEEEECCCC-CeEEEEecCCCeEEE
Q 021247 52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL-EASPSEVWQMQFDPKG-TTLAVAGGGSASVKL 129 (315)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~ 129 (315)
+...+.||++.|+++.|+.+|.+|++|+.|-.+.|||....+.+..+ .+|...|.++.|-|.. +.++++|.+|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45567899999999999999999999999999999999877666554 4678899999999864 567889999999999
Q ss_pred EecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-CEEEEecCCCcEEEEEcccceee----------eeecC
Q 021247 130 WDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-RRIACGSMDGTISVFDVTRAKFL----------HHLEG 198 (315)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~s~dg~i~i~d~~~~~~~----------~~~~~ 198 (315)
+|+...+.-..- ...........-|...|..++..|++ +.|.++++||.++-+|++..... ..+..
T Consensus 122 fdl~~~~~~~~d---~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 122 FDLDSSKEGGMD---HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred Eecccccccccc---cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999753321110 00000001112345567788888988 78899999999999999753211 01111
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247 199 HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 231 (315)
Q Consensus 199 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 231 (315)
.--...++..+|.++.+|+.|+.|-..++||.+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 223567899999999999999999999999964
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.5e-16 Score=118.41 Aligned_cols=248 Identities=20% Similarity=0.231 Sum_probs=163.4
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC-----C----CEEEEe--eC
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS-----G----IIAASA--SL 80 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~-----g----~~l~s~--~~ 80 (315)
.|+..|+.+.-.|.. -|.+-+.|..+.+|+...... ...|.-.++++-|.+. + ..++.- +.
T Consensus 54 ~g~~~it~lq~~p~d-----~l~tqgRd~~L~lw~ia~s~~---i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs 125 (323)
T KOG0322|consen 54 FGRLFITNLQSIPND-----SLDTQGRDPLLILWTIAYSAF---ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS 125 (323)
T ss_pred hccceeeceeecCCc-----chhhcCCCceEEEEEccCcce---EEEeeeeccccccccceeccCCCcchhheecCCccc
Confidence 678888888877753 389999999999999875433 2234445555555432 1 111111 11
Q ss_pred CCeEEEEECCCCceeEEee----CCcccEEEEEECC--CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247 81 DSFVRVFDVDTNASIATLE----ASPSEVWQMQFDP--KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK 154 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~----~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (315)
|. +++-|.-....+...+ ...+.+.+..+.. ....++++|-.+|.+.+||+.++..+-.+....+. ....
T Consensus 126 de-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv---~~~~ 201 (323)
T KOG0322|consen 126 DE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV---ESPN 201 (323)
T ss_pred ch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc---ccch
Confidence 11 1111111111111111 1223455555322 23456778888999999999886443322111110 0112
Q ss_pred CCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--e--eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247 155 SSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--K--FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 230 (315)
..|+.++.++.+.+.-..=++|+.+-.+..|.+... . ........+..+..+.+-| +++++++++.|+.|++|..
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 346677999999987667778888888999987532 1 1222233345667778887 7889999999999999999
Q ss_pred CCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
++...+..+.-|.+.|++++|+|+..++|+++.|++|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.7e-13 Score=106.06 Aligned_cols=275 Identities=14% Similarity=0.213 Sum_probs=176.7
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccc--eEEEEeCCCCCEEEEeeCC------CeEEEE
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLG--VVSVAAHPSGIIAASASLD------SFVRVF 87 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s~~~d------~~i~~w 87 (315)
+...++|..+.. .++.+.|.-.++|+.+..+.......+..+ +..+-| ..+-+.+.||.+ ..+-||
T Consensus 7 ~~lsvs~NQD~S-----cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-----CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCc-----eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEE
Confidence 444588876553 566677777899987654432222222222 111111 122222334333 469999
Q ss_pred ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC-CcceeeeecCCC-CCCCCCCccCCCCcceEEEE
Q 021247 88 DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA-TWNLIATLSIPR-PEGLKPTDKSSSKKFVLSVA 165 (315)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 165 (315)
|=....++.++. ...+|.++.+.++ .+++. -.+.|.||... +-+.+..+.... |.+ ..+++
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkG------------lC~~~ 143 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKG------------LCSLC 143 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCc------------eEeec
Confidence 966667777665 3568999999865 34332 46799999876 334443332211 211 22222
Q ss_pred ECCCCCEEEE-ecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCeeEEEeec
Q 021247 166 WSPDGRRIAC-GSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH-VHMYDAEGKSLVTAMSG 241 (315)
Q Consensus 166 ~~~~~~~l~~-~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~ 241 (315)
-..+...||. |-.-|.|.+-|+...+. ...+..|...|.+++.+- ++.++++++..|+ |+|||..+++.+.+++-
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 2223334443 55779999999976655 467789999999999986 7789999999988 69999999999888763
Q ss_pred --ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc-----------cc-------------ccccceEEEEEee
Q 021247 242 --HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS-----------MT-------------NHTDQVWGVSFRP 295 (315)
Q Consensus 242 --~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~-------------~~~~~v~~~~~s~ 295 (315)
....|.+++|||+..+|++++..|++.||.++....... +. -..+..--++|-.
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~ 302 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS 302 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC
Confidence 345699999999999999999999999998864221111 11 1122333456666
Q ss_pred CCCEEEEEeCCCcEEEeec
Q 021247 296 LGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 296 ~~~~l~s~~~d~~i~i~~~ 314 (315)
+.+.++..+.||+.+-+.+
T Consensus 303 ~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 303 ETNTVIAICADGSYYKFKF 321 (346)
T ss_pred CCCeEEEEEeCCcEEEEEe
Confidence 6567888888888765554
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=5.9e-15 Score=115.29 Aligned_cols=232 Identities=21% Similarity=0.234 Sum_probs=171.1
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec-CCcc
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT-ATWN 136 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~~ 136 (315)
.+|++.+|++++..++.+-....|.|+.....+ ...++..|...|..++|.|..+.+ ++|+.|..-++|.. ..++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCCCCccccccCCCCe
Confidence 589999999999999999999999999987765 456788899999999999998866 78999999999987 3333
Q ss_pred eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceee--e--eecCCccceEEEEEcCCC
Q 021247 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL--H--HLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~--~--~~~~~~~~v~~~~~~~~~ 212 (315)
...++.+ ..++...+++.|+|.++.|++|+....|.+|=++...-. . .-+.+...|.+++|+| +
T Consensus 90 WkptlvL-----------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-n 157 (361)
T KOG1523|consen 90 WKPTLVL-----------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-N 157 (361)
T ss_pred eccceeE-----------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-C
Confidence 3322221 122344789999999999999999999998877544321 1 1123567789999999 5
Q ss_pred CcEEEEEeCCCeEEEEeCC-----C-------------CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 213 PRVLFSASDDTHVHMYDAE-----G-------------KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
.-+|++|+.|++.++|..- . ++++.++....+++..+.|+|+|..|+=.+.|..|.+=|...
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 6688899999999998631 1 233444545678999999999999999999999999998765
Q ss_pred cc-eehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247 275 RA-AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306 (315)
Q Consensus 275 ~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 306 (315)
.. .........-+..++.|-.. +.++.++.|
T Consensus 238 p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 238 PSERVQSVATAQLPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred CchhccchhhccCCceeeEeecC-CceeecCCC
Confidence 43 23333222255666666543 234444444
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=3.6e-17 Score=133.41 Aligned_cols=191 Identities=21% Similarity=0.328 Sum_probs=162.5
Q ss_pred EEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEE
Q 021247 105 VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV 184 (315)
Q Consensus 105 v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i 184 (315)
-..+.+..+|.+++ .|+.-|.+..+|..++++...+...+. |..+.|-.+.++||++ ....+++
T Consensus 132 PY~~~ytrnGrhll-lgGrKGHlAa~Dw~t~~L~~Ei~v~Et--------------v~Dv~~LHneq~~AVA-QK~y~yv 195 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLL-LGGRKGHLAAFDWVTKKLHFEINVMET--------------VRDVTFLHNEQFFAVA-QKKYVYV 195 (545)
T ss_pred CeeeeecCCccEEE-ecCCccceeeeecccceeeeeeehhhh--------------hhhhhhhcchHHHHhh-hhceEEE
Confidence 35678888898875 467889999999999998887765432 6677787666666665 6678999
Q ss_pred EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247 185 FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD 264 (315)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 264 (315)
||- .|..+..++.| ..|..+.|-| ...+|++++..|.++--|...++++..+....+.+..+.-+|-+..+-+|..+
T Consensus 196 YD~-~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghsn 272 (545)
T KOG1272|consen 196 YDN-NGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSN 272 (545)
T ss_pred ecC-CCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCC
Confidence 994 45666666544 4778899998 45688899999999999999999998888788888889999999999999999
Q ss_pred CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 265 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|+|.+|.-++.+++..+..|.++|.++++.++|+|++|.|.|..++|||+
T Consensus 273 GtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred ceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 99999999999999888999999999999999999999999999999996
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.2e-14 Score=126.48 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=151.2
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (315)
..|.+||.+... .+.+..+...+.+..|+|+|+.++..+.+ ..|++||+.+++... +..........+|+|+|+.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 358889876443 34444566788999999999988877643 469999998876533 2233444557899999998
Q ss_pred EEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CCc--EEEEEcccce
Q 021247 117 LAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGT--ISVFDVTRAK 191 (315)
Q Consensus 117 ~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~--i~i~d~~~~~ 191 (315)
++++.+.++ .|.+||+.+++... +. .+.......+|+|+|++|+..+. +|. |+++|+.+++
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTR-LT-------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEE-Cc-------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 877655544 69999998765432 11 01112346799999998887653 444 7777776655
Q ss_pred eeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---Cc
Q 021247 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RT 266 (315)
Q Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~ 266 (315)
... +..+........|+|++..++++...+ ..|.+||+.+++.. .+. +........|+|+|+.++..+.+ +.
T Consensus 328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 322 222222344679999544444443333 36999999877654 332 22234567899999987666553 35
Q ss_pred EEEEecCccceehcccccccceEEEEEee
Q 021247 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRP 295 (315)
Q Consensus 267 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 295 (315)
+.++++.. .....+..+.+.+...+|+|
T Consensus 405 L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 77778754 33444444556677778876
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=3.8e-17 Score=141.94 Aligned_cols=238 Identities=18% Similarity=0.302 Sum_probs=180.3
Q ss_pred ceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247 52 LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d 131 (315)
..+.+.+|..+|.|..|...|.++++|+.|..++||..++..+.....+|.+.+..++.+-. +.++++++.|..|++|.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEe
Confidence 34556789999999999999999999999999999999999999999999999999998755 44567888999999999
Q ss_pred cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee---ec-CCccceEEEE
Q 021247 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH---LE-GHFMPVRSLV 207 (315)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~---~~-~~~~~v~~~~ 207 (315)
+..+.++..+ .+|...|++++|+|-- +.+.||++++||.+-.-.+.. .. .....+.++.
T Consensus 261 l~~~~pvsvL-------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 261 LPDGAPVSVL-------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred cCCCchHHHH-------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeee
Confidence 9877666544 3466679999999943 778999999999861111111 00 1123445555
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc-CCCCeEEEEeCCCcEEEEecCccceehccccccc
Q 021247 208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS-PDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTD 286 (315)
Q Consensus 208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 286 (315)
|.. ....+++++.|+.-..|...... .+.....-+..+ .-..+.+++-.+..+.+|++..+..++.+.+|.+
T Consensus 324 ~~~-~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 324 FEN-NGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred ccc-cccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 554 55678899999887777653211 111111111111 1125677788888899999999999999999999
Q ss_pred ceEEEEEeeCCCEE-EEEeCCCcEEEeec
Q 021247 287 QVWGVSFRPLGGRV-VSVSDDKSISLYEY 314 (315)
Q Consensus 287 ~v~~~~~s~~~~~l-~s~~~d~~i~i~~~ 314 (315)
.+..+.++|.+..+ .+++.||.+.|||.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 99999999998877 59999999999985
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=4.9e-15 Score=113.99 Aligned_cols=149 Identities=16% Similarity=0.358 Sum_probs=106.2
Q ss_pred EEEEECCCCCEEEEecC----------CCcEEEEEcc-cceeeeeecC-CccceEEEEEcCCCCcEEEE-EeCCCeEEEE
Q 021247 162 LSVAWSPDGRRIACGSM----------DGTISVFDVT-RAKFLHHLEG-HFMPVRSLVYSPVDPRVLFS-ASDDTHVHMY 228 (315)
Q Consensus 162 ~~~~~~~~~~~l~~~s~----------dg~i~i~d~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s-~~~d~~i~~w 228 (315)
..+.|+|+|++|++-.. -+...+|-++ .+.....+.. ...+|.+++|+|.+.++++. |..+..+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 36889999987765332 1234555542 2233444433 34579999999966555443 4467899999
Q ss_pred eCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 229 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
|.+ .+.+..+. ...++.+.|+|+|++|++++.+ |.|.+||.+..+.+.+.. | ..++.++|||+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 33444443 4567889999999999998754 569999999888777654 3 35789999999999987764
Q ss_pred ------CCcEEEeecC
Q 021247 306 ------DKSISLYEYS 315 (315)
Q Consensus 306 ------d~~i~i~~~~ 315 (315)
|..++||++.
T Consensus 164 ~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccceeccccEEEEEec
Confidence 7899999873
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.7e-14 Score=121.06 Aligned_cols=236 Identities=17% Similarity=0.193 Sum_probs=151.6
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC---CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL---DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~---d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (315)
..|.++|.+.... +.+..|...+.+..|+|+|+.|+..+. +..|++||+.+++.. .+......+...+|+|+|+.
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 3678888755433 445567778999999999998887653 468999999887653 34445566778899999998
Q ss_pred EEEEecCCCe--EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEcccce
Q 021247 117 LAVAGGGSAS--VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAK 191 (315)
Q Consensus 117 ~~~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~ 191 (315)
++++...++. |.+||+.+++... +. .+........|+|||+.|+..+. +| .|+++|+..+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTR-LT-------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEE-cc-------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 8777665554 7777887654432 11 01122456899999998876653 33 58888887654
Q ss_pred eeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-----
Q 021247 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD----- 264 (315)
Q Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----- 264 (315)
.. .+..+...+....|+|++..++++.... ..|.+||..++... .+.. ...+....|+|+|+.|+..+.+
T Consensus 326 ~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 326 PR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred eE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 33 3333334456678999554444443322 46888998665432 2221 2235678999999987665443
Q ss_pred -CcEEEEecCccceehcccccccceEEEEEeeC
Q 021247 265 -RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 265 -~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
..+.+.|+..+.. ..+.. ...+...+|+|.
T Consensus 403 ~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 403 APKLYTVDLTGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred cceEEEEECCCCce-EEccC-CCCccCcccCCC
Confidence 2577778765443 23332 334566677763
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.1e-14 Score=122.89 Aligned_cols=236 Identities=18% Similarity=0.174 Sum_probs=145.2
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (315)
..|.++|.+.. ..+.+..+...+.+..|+|+|+.++..+.+ ..|++||+.+++... +......+...+|+|+++.
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 45666776433 333444566788999999999988866543 459999998886543 3333445668899999998
Q ss_pred EEEEecCCCeEEEEe--cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CCcEEEEE--cccce
Q 021247 117 LAVAGGGSASVKLWD--TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGTISVFD--VTRAK 191 (315)
Q Consensus 117 ~~~~~~~d~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~i~i~d--~~~~~ 191 (315)
++++...++...+|. +..++ ...+. .+........|+|||+.|+..+. ++...+|. +.++.
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt-------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLT-------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECC-------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 887777777766665 43322 11111 11122456789999998876553 45555554 44443
Q ss_pred eeeeecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC-c-
Q 021247 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR-T- 266 (315)
Q Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~- 266 (315)
.. .+..+........|+| +++.++..+.++ .|.+||+.++.... +... .......|+|+|+.|+.++.++ .
T Consensus 320 ~~-~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~ 395 (427)
T PRK02889 320 AQ-RVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRS 395 (427)
T ss_pred eE-EEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCE
Confidence 22 2221222234578999 455665554433 69999998775443 2222 2345789999999887766544 2
Q ss_pred -EEEEecCccceehcccccccceEEEEEeeC
Q 021247 267 -VKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 267 -i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
+.+.++. ++....+..+.+.+...+|+|-
T Consensus 396 ~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 396 VLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 4444553 4444445555567777788874
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4e-14 Score=118.79 Aligned_cols=279 Identities=15% Similarity=0.178 Sum_probs=191.1
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
..|....+.+.-+|++.. +++||-.--.|++||+.+..+.....-....|.-.-.+.|=..++---.|++|.+-..
T Consensus 48 fe~p~ast~ik~s~DGqY---~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQY---LLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred cCCccccceeEecCCCcE---EEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence 378889999999999876 7899999999999999876543222112234555555555555555566777754221
Q ss_pred CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC
Q 021247 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG 170 (315)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (315)
.|.-.. +. -+.....++++.-.-.++++|+ ...|.-.++..+..+..+.... ..++++..++..
T Consensus 124 ~G~hy~-~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~-------------~~lN~v~in~~h 187 (703)
T KOG2321|consen 124 YGRHYR-TR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDS-------------GELNVVSINEEH 187 (703)
T ss_pred cCeeee-ee-cCcCCccccccCCCccEEEeec-CcceEEEEcccccccccccccc-------------ccceeeeecCcc
Confidence 121111 11 1233445666644444544443 4567777787777665553322 238899999999
Q ss_pred CEEEEecCCCcEEEEEcccceeeeeec------CCc-----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE-
Q 021247 171 RRIACGSMDGTISVFDVTRAKFLHHLE------GHF-----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA- 238 (315)
Q Consensus 171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~------~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~- 238 (315)
.+|++|+.+|.|-.||.+.......+. .|. ..|++++|+. ++-.++.|..+|.+.+||++..+.+..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeec
Confidence 999999999999999998765544432 222 2489999985 577899999999999999998765432
Q ss_pred eecccccEEEEEEcCC--CCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 239 MSGHASWVLSVDASPD--GAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 239 ~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
-.+-.-+|..+.|.+. +..|+| .....++|||-.+++....+..- ..++.+++-|++.+++++-++..+..|
T Consensus 267 dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence 2233567889999775 334444 34567999999999988776543 458899999999999999888776654
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.4e-15 Score=126.41 Aligned_cols=200 Identities=22% Similarity=0.272 Sum_probs=141.7
Q ss_pred EeCCCCCEEEEeeCCCeEEEEECCCCceeEEe----eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247 67 AAHPSGIIAASASLDSFVRVFDVDTNASIATL----EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS 142 (315)
Q Consensus 67 ~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 142 (315)
.-.+.+.-++.+-.-|.+.+.|....+....+ ......|.++.|-|.+..++++.-.+|.+.+||..- .....
T Consensus 180 ~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~---~~~~t 256 (636)
T KOG2394|consen 180 TATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI---VCGAT 256 (636)
T ss_pred ccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc---cccCC
Confidence 33567777777888888988887652211111 112367999999998877777888899999998621 00000
Q ss_pred CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247 143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
.+ +-...+++..|......+. .+..++..+.-....|..++|+| ++++|++.+.|
T Consensus 257 --~p----------------~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqD 311 (636)
T KOG2394|consen 257 --AP----------------SYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQD 311 (636)
T ss_pred --CC----------------cccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcC-CCceEEEEecC
Confidence 00 1111234444433221110 01122223333345889999999 88999999999
Q ss_pred CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247 223 THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR 294 (315)
Q Consensus 223 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 294 (315)
|.++|||..+.+++..+..--+...+++|+|||+++++|+.|--|.||.+..++.+..-.+|..+|..|+|.
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999998888777666656779999999999999999999999999999999998888999999999998
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.5e-13 Score=108.07 Aligned_cols=273 Identities=16% Similarity=0.230 Sum_probs=181.9
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCc
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNA 93 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~ 93 (315)
+.|--+.|.-+.. -+|.....|+.|.+|+....+-.-.+..-..++.+++++|+| .+|.+...|-.|-+|.+.+.+
T Consensus 49 dki~yieW~ads~---~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 49 DKIVYIEWKADSC---HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred HHhhheeeeccce---eeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 4666778875443 256666789999999987766555566667889999999999 677788899999999998866
Q ss_pred eeEEeeCCcccEEEEEECCCCCeEEEEecC-----------------------------------CCeEEEEecCCccee
Q 021247 94 SIATLEASPSEVWQMQFDPKGTTLAVAGGG-----------------------------------SASVKLWDTATWNLI 138 (315)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------------------------d~~i~~~d~~~~~~~ 138 (315)
.. .+...+..+..++|+|+|++.++..-. +..+.+||..-.-.+
T Consensus 126 ~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 126 GY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred eE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee
Confidence 53 334444556888999999865543211 122333332110000
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee------------------------
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH------------------------ 194 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~------------------------ 194 (315)
+. ....-.+..+.|+|.++.|+.|+.|+.+++-+--+-+...
T Consensus 205 --~a------------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 205 --YA------------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred --ee------------eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 00 0011236789999999999999999998875421111000
Q ss_pred ------------------------------------eec------CCccceEEEEEcCCCCcEEEEEeC--CCeEEEEeC
Q 021247 195 ------------------------------------HLE------GHFMPVRSLVYSPVDPRVLFSASD--DTHVHMYDA 230 (315)
Q Consensus 195 ------------------------------------~~~------~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~ 230 (315)
.++ .....+..++|++ +..++++-.+ -+.+.+||+
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdl 349 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDL 349 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEec
Confidence 000 0112345678887 5666665544 257999999
Q ss_pred CCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247 231 EGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS 308 (315)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 308 (315)
+..++-..+. ...+|....|+|...-|+.+....++++|-..- ...-..+...=.|..+.|.-+|..++-.+.|..
T Consensus 350 q~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 350 QNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 8766544332 355799999999888888887778899997764 333334455567899999999999998888864
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.8e-13 Score=119.34 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=135.8
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec--CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
..|.++|.... ....+..+...+...+|+|+|+.++++.. .+..|.+||+.+++...... ...
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--------------~~g 246 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--------------FPG 246 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------CCC
Confidence 47888888544 44555566778999999999998876643 35689999998765432111 112
Q ss_pred ceEEEEECCCCCEEE-EecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247 160 FVLSVAWSPDGRRIA-CGSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~-~~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~ 234 (315)
.+...+|+|+|+.|+ +.+.++. |++||+.++.. ..+..+........|+|++..++++...++ .|+++|..++.
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 355789999999875 4555554 77889877654 345555555677899995444444443333 68888887665
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 306 (315)
.. .+..+...+....|+|+|+.|+..+.+ ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+
T Consensus 326 ~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 326 PR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred eE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 43 333334456678899999988776543 3578888765432 2222 12345678999999998765543
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=7.8e-15 Score=130.63 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=147.2
Q ss_pred EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247 108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187 (315)
Q Consensus 108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~ 187 (315)
..+......++ ....++.+-+||.........+..+.... -....-+..+++.-++++|+.-+.|.+|+.
T Consensus 93 ~~l~~e~k~i~-l~~~~ns~~i~d~~~~~~~~~i~~~er~~---------l~~~~~~g~s~~~~~i~~gsv~~~iivW~~ 162 (967)
T KOG0974|consen 93 AKLFEENKKIA-LVTSRNSLLIRDSKNSSVLSKIQSDERCT---------LYSSLIIGDSAEELYIASGSVFGEIIVWKP 162 (967)
T ss_pred cchhhhcceEE-EEEcCceEEEEecccCceehhcCCCceEE---------EEeEEEEeccCcEEEEEeccccccEEEEec
Confidence 33333444443 44567889999987655443332111100 001223344566668999999999999998
Q ss_pred ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-EeecccccEEEEEEcCCCCeEEEEeCCCc
Q 021247 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-AMSGHASWVLSVDASPDGAAITTGSSDRT 266 (315)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 266 (315)
........+.+|.+.|.++.++. +++++++.++|+++++|++.+.+... ..-+|+..++.+.+.|+ .++|++.|.+
T Consensus 163 ~~dn~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 163 HEDNKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred cccCCcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence 73333335889999999999996 78999999999999999999887765 66789999999999998 8999999999
Q ss_pred EEEEecCccceehcccccc-cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 267 VKLWDLNMRAAMQSMTNHT-DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 267 i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.++|+.+ +..+.++..|. +.+|.++.+++...++|++.|+.+++|++
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 9999776 45566777776 57999999999989999999999999986
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.5e-13 Score=117.86 Aligned_cols=213 Identities=20% Similarity=0.219 Sum_probs=137.3
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec--CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
..|.++|...... ..+..+...+...+|+|+|+.++++.. .+..+.+||+.+++....... ..
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------------~~ 243 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--------------PR 243 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--------------CC
Confidence 3688999875543 334445668899999999998876542 345799999887653322211 11
Q ss_pred ceEEEEECCCCCEEEEe-cCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247 160 FVLSVAWSPDGRRIACG-SMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~-s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~ 234 (315)
......|+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+|++..++++...++ .|+++|..++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 13457899999988754 4444 59999998776543 3334446678899995443444444444 45555776654
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc---
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS--- 308 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~--- 308 (315)
.. .+..+........|+|+|+.++..+.+ ..|.+||+..++.. .+... ....+..|+|||++|+..+.++.
T Consensus 323 ~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 323 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred eE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceE
Confidence 33 333334445678899999988776543 35888998876533 22221 12346789999999998888765
Q ss_pred EEEee
Q 021247 309 ISLYE 313 (315)
Q Consensus 309 i~i~~ 313 (315)
+.+++
T Consensus 400 l~~~~ 404 (429)
T PRK03629 400 LNLVS 404 (429)
T ss_pred EEEEE
Confidence 44544
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=8.2e-14 Score=121.37 Aligned_cols=213 Identities=22% Similarity=0.276 Sum_probs=136.9
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
..|.+||.... ....+..+...+...+|+|+++.++++... ..+|.+||+.+++....... ..
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--------------~g 248 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--------------RG 248 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--------------CC
Confidence 46899998644 344455566778899999999988776533 35799999977654322111 11
Q ss_pred ceEEEEECCCCCEEE-EecCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCe
Q 021247 160 FVLSVAWSPDGRRIA-CGSMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHMYDAEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~-~~s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~ 234 (315)
......|+|+|+.++ +.+.+| .|++||+.+++. ..+..+........|+|++..++++...++. |+++|..+++
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 234679999999775 445555 599999987764 3344454455678999954444444444444 7777776654
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-C--c
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-K--S 308 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~--~ 308 (315)
... +..+.......+|+|+|+.++..+.++ .|.+||+..++.. .+. +........|+|||++|+..+.+ + .
T Consensus 328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 332 222333445689999999887665443 5899999876544 332 22234567899999998766654 3 3
Q ss_pred EEEee
Q 021247 309 ISLYE 313 (315)
Q Consensus 309 i~i~~ 313 (315)
|.+++
T Consensus 405 L~~~~ 409 (433)
T PRK04922 405 LAAVS 409 (433)
T ss_pred EEEEE
Confidence 44444
No 230
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=2.4e-14 Score=111.92 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=151.3
Q ss_pred eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247 98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS 177 (315)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s 177 (315)
+.....+|.+.+|+++...+++ +-....|.||.....+.-... .....|...|++++|+|..+.|++|+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv-~~~~~evhiy~~~~~~~w~~~----------htls~Hd~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAV-SPNNHEVHIYSMLGADLWEPA----------HTLSEHDKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred eeeccCceeeeeecCCCceEEe-ccCCceEEEEEecCCCCceec----------eehhhhCcceeEEeecCCCCceeEcc
Confidence 3334678999999999887755 456778999987654321111 12234566799999999999999999
Q ss_pred CCCcEEEEEc-ccceee--eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EE--EeecccccEEEEE
Q 021247 178 MDGTISVFDV-TRAKFL--HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL--VT--AMSGHASWVLSVD 250 (315)
Q Consensus 178 ~dg~i~i~d~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~--~~~~~~~~i~~~~ 250 (315)
.|..-++|.. ..++.. ..+.-++...+++.|+| ..+.+++|+.-+.|-+|=.+...- +. .-..+...|++++
T Consensus 75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred CCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 9999999998 444433 33445788999999999 677899999999988876554321 11 1123566789999
Q ss_pred EcCCCCeEEEEeCCCcEEEEecCc------------------cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 251 ASPDGAAITTGSSDRTVKLWDLNM------------------RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 251 ~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
|+|++-+|++|+.|++.|+|..-- +....++....+.+..+.|+|+|..|+=.+-|.++.+=
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 999999999999999999996421 11122233345789999999999999999999998775
Q ss_pred e
Q 021247 313 E 313 (315)
Q Consensus 313 ~ 313 (315)
|
T Consensus 234 d 234 (361)
T KOG1523|consen 234 D 234 (361)
T ss_pred e
Confidence 4
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.9e-14 Score=112.52 Aligned_cols=236 Identities=13% Similarity=0.182 Sum_probs=166.8
Q ss_pred cceEEEEeCCCC--CEEEEeeCCCeEEEEECCCCceeEE------eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEec
Q 021247 61 LGVVSVAAHPSG--IIAASASLDSFVRVFDVDTNASIAT------LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDT 132 (315)
Q Consensus 61 ~~v~~~~~~~~g--~~l~s~~~d~~i~~w~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~ 132 (315)
..+.++.|..++ ..+...+.|..+....+........ ......+|..++.. ++ .+++|-.+|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC--EEEEEecCCcEEEEec
Confidence 456666665444 4566565676777766665543322 22334455555543 22 4567788999999988
Q ss_pred CCcc-----eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC-EEEEecCC--CcEEEEEcccceeeeeecC------
Q 021247 133 ATWN-----LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR-RIACGSMD--GTISVFDVTRAKFLHHLEG------ 198 (315)
Q Consensus 133 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~s~d--g~i~i~d~~~~~~~~~~~~------ 198 (315)
..+. ++..... ..+..+.-.+... .+++|+.. ..+.+||+++.+.+-.-+.
T Consensus 133 k~~d~hss~l~~la~g---------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG---------------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred cCCccccccceeeecC---------------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7432 1111110 1133444455444 45669988 8899999987754432221
Q ss_pred -Cccc--eEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 199 -HFMP--VRSLVYSPV-DPRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 199 -~~~~--v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
-.-| ++++.|-|. ..+.|++++.-+.+++||.+.+ .++..+.-...+++++...|.+..+++|..-+.+..||++
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 1113 457778762 2678999999999999999854 5666666667889999999999999999999999999999
Q ss_pred ccceehc-ccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 274 MRAAMQS-MTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 274 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.++.+.. +.+..+.+.++..+|.+.+|+++|.|+.+||||.
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 9887766 7888899999999999999999999999999996
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=9.7e-15 Score=121.46 Aligned_cols=191 Identities=23% Similarity=0.336 Sum_probs=135.7
Q ss_pred EEEeeCCCcEEEEcCCCCcceeecc----ccccceEEEEeCCCC-CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEE
Q 021247 33 LLTGSLDETVKLWRPDDMQLERTNT----GHCLGVVSVAAHPSG-IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQ 107 (315)
Q Consensus 33 l~sgs~d~~v~~w~~~~~~~~~~~~----~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~ 107 (315)
++.|-..|.|++.++...+..+.+. -.+..|+++.|-|.+ .+++.+-.+|.++++|.+-... ...+.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------~t~p~-- 259 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------ATAPS-- 259 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc------CCCCc--
Confidence 6778888999999876644433222 123579999998754 5677788899999998732110 00111
Q ss_pred EEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247 108 MQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187 (315)
Q Consensus 108 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~ 187 (315)
....+++..+.+--+.. ..+.+.+..+.+ .+..|...+|+|||++||+.+.||.++|||.
T Consensus 260 ~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~-------------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f 319 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKS-------KKTRNPVARWHI-------------GEGSINEFAFSPDGKYLATVSQDGFLRIFDF 319 (636)
T ss_pred ccccCCCCeeEEeeeec-------cccCCccceeEe-------------ccccccceeEcCCCceEEEEecCceEEEeec
Confidence 11122333222211100 001122222211 1224889999999999999999999999999
Q ss_pred ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc
Q 021247 188 TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS 252 (315)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 252 (315)
.+.+++..++...+...|+.|+| |++++++|+.|--|.||....++++..-.+|..||..++|+
T Consensus 320 dt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 320 DTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 98888877777788899999999 78999999999999999999999999999999999999998
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.8e-14 Score=121.13 Aligned_cols=207 Identities=23% Similarity=0.280 Sum_probs=130.9
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
..|.++|.. +.....+..+...+...+|+|+++.++++...+ ..|.+||+.+++....... ..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--------------~g 240 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--------------KG 240 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--------------CC
Confidence 457777764 333344445667788999999999887765433 4699999987654322111 11
Q ss_pred ceEEEEECCCCCEEE-EecCCCcEEEE--EcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe--CCCCe
Q 021247 160 FVLSVAWSPDGRRIA-CGSMDGTISVF--DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD--AEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~-~~s~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd--~~~~~ 234 (315)
.+...+|+|||+.|+ +.+.++...+| |+..+. ...+..+........|+|++..+++++..++...+|. ..++.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 245789999999886 45677765555 444443 3445445445567789995444444544455555554 44443
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
.. .+..+........|+|+|++++..+.++ .|.+||+..++... +... .......|+|||+.|+..+.++
T Consensus 320 ~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 320 AQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence 32 2222223344678999999988776554 59999998765432 2222 2345779999999998777654
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=8.2e-14 Score=107.20 Aligned_cols=156 Identities=24% Similarity=0.450 Sum_probs=106.7
Q ss_pred EEEEECCCCCeEEEEecC---------CCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE
Q 021247 106 WQMQFDPKGTTLAVAGGG---------SASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC 175 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~---------d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 175 (315)
..+.|+|+|.++++.... -+...+|.++.. .....+.+ .....|..++|+|+|+.|++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l------------~~~~~I~~~~WsP~g~~fav 76 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL------------KKEGPIHDVAWSPNGNEFAV 76 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec------------cCCCceEEEEECcCCCEEEE
Confidence 367799999888765541 123444443221 11111111 12234999999999998765
Q ss_pred --ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEEeecccccEEEEE
Q 021247 176 --GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSLVTAMSGHASWVLSVD 250 (315)
Q Consensus 176 --~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 250 (315)
|..++.|.+||++ ++.+..+. ...+..+.|+| ++++++.++. .|.|.+||.+..+.+.... | ..+..++
T Consensus 77 i~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~ 150 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVE 150 (194)
T ss_pred EEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEE
Confidence 4467799999996 55555553 45778999999 5667777653 4679999999887776654 2 3478999
Q ss_pred EcCCCCeEEEEeC------CCcEEEEecCccceehc
Q 021247 251 ASPDGAAITTGSS------DRTVKLWDLNMRAAMQS 280 (315)
Q Consensus 251 ~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~ 280 (315)
|+|+|++|+++.. |+.++||+.. |+.+..
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999999999875 7788999986 554433
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.6e-13 Score=107.20 Aligned_cols=242 Identities=17% Similarity=0.228 Sum_probs=154.0
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceee
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIA 139 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~ 139 (315)
.+..++|++.-.-++.+..|-.||+++-.. .+...++. ....|.+++|-|.+...++.|. .+-|.+|.... .+.-.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccccc
Confidence 466788888666778899999999999877 44444433 3457999999998765544443 46789997643 11111
Q ss_pred eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE
Q 021247 140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218 (315)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 218 (315)
.+... ........+.....+|++|.|++||..+++++ .|..|.+||+.++..+.-....-+.+.-++|+| ++.+|++
T Consensus 178 ~~~~~-s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfa 255 (445)
T KOG2139|consen 178 NIRMM-STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFA 255 (445)
T ss_pred ccccc-cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEE
Confidence 10000 00001111222336799999999999998876 567899999998876544433456778899999 6678999
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE-EEeCCCcEEEEecCccc--ee-----------hcc---
Q 021247 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT-TGSSDRTVKLWDLNMRA--AM-----------QSM--- 281 (315)
Q Consensus 219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~--~~-----------~~~--- 281 (315)
+.-|+..++|......-.....-..+.|..-.|+|.|+.|+ +.+..-.++--.+.... .. ..+
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999995433222222222345888999999998654 44443333322221110 00 000
Q ss_pred ---cc---cccceEEEEEeeCCCEEEEEeCCC
Q 021247 282 ---TN---HTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 282 ---~~---~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
.+ ..+++.+++|.|.|.+||..-..+
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 11 135788999999999998765443
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.2e-13 Score=108.53 Aligned_cols=222 Identities=16% Similarity=0.199 Sum_probs=150.0
Q ss_pred EEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEE-EeeCCCeEEEEECCCCceeEEe
Q 021247 20 VTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAA-SASLDSFVRVFDVDTNASIATL 98 (315)
Q Consensus 20 v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~~~d~~i~~w~~~~~~~~~~~ 98 (315)
..|+|.++ ++|+.+.- .+.+-|.++.++...+.. -..|..+-+..+..+++ .+..|+.|.+|++...+--..+
T Consensus 14 c~fSp~g~----yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 14 CSFSPCGN----YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred eeECCCCC----eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46888876 68887754 777788777765443321 23566677777765554 5678889999999988888888
Q ss_pred eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC
Q 021247 99 EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM 178 (315)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~ 178 (315)
+.....+..++|+|+|+.++.+..-+..|.+|.+.+.+... + +.+ +.-+..++|+|+|++.+..+.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~--~~p-----------K~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-L--PHP-----------KTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-e--ccc-----------ccCceeEEECCCCceeeeeec
Confidence 88889999999999999999998899999999998744332 1 111 122578999999998887754
Q ss_pred CCcEEEEEcc---cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCC
Q 021247 179 DGTISVFDVT---RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDG 255 (315)
Q Consensus 179 dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (315)
---.-.+++. .-..+..+...+...+.+.|+|+ +. .+.+||.--...+..+. -.-.+..++|+|-+
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~---------~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GN---------WLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCN 222 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-Cc---------EEEEecchhhheeeeee-eccceeEEEecccc
Confidence 3211111111 11122333444455678899994 33 45567643221111111 12457789999999
Q ss_pred CeEEEEeCCCcEEEEec
Q 021247 256 AAITTGSSDRTVKLWDL 272 (315)
Q Consensus 256 ~~l~s~~~d~~i~iwd~ 272 (315)
++|+.|+.|+.+|+-+-
T Consensus 223 qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNH 239 (447)
T ss_pred ceEEeeccchhhhhhce
Confidence 99999999999988653
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=6e-11 Score=100.29 Aligned_cols=260 Identities=19% Similarity=0.246 Sum_probs=162.7
Q ss_pred EEEEEeecCCCCCcEEEEeeC----CCcEEEEcCCCC--ccee--eccccccceEEEEeCCCCCEEEEee-CCCeEEEEE
Q 021247 18 WAVTWVPATETRPALLLTGSL----DETVKLWRPDDM--QLER--TNTGHCLGVVSVAAHPSGIIAASAS-LDSFVRVFD 88 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sgs~----d~~v~~w~~~~~--~~~~--~~~~h~~~v~~~~~~~~g~~l~s~~-~d~~i~~w~ 88 (315)
.-++++|.. .+|++... ++.|..|..+.. ++.. ...........++++|++.+++++. .++.+.+++
T Consensus 40 s~l~~~~~~----~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 40 SWLAVSPDG----RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp CCEEE-TTS----SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCC----CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345555544 36777765 568888876543 3322 2222234567899999999888775 589999999
Q ss_pred CCCCceeEE----ee----------CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc--ee--eeecCCCCCCCC
Q 021247 89 VDTNASIAT----LE----------ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN--LI--ATLSIPRPEGLK 150 (315)
Q Consensus 89 ~~~~~~~~~----~~----------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~--~~--~~~~~~~~~~~~ 150 (315)
+.....+.. +. ......-.+.++|++++++++..+...|.+|++.... +. ..+..+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G---- 191 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG---- 191 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT----
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC----
Confidence 987432221 21 1224567899999999998888778899999987644 32 22222221
Q ss_pred CCccCCCCcceEEEEECCCCCEEEE-ecCCCcEEEEEcc--ccee--eeeecC------CccceEEEEEcCCCCcEEEEE
Q 021247 151 PTDKSSSKKFVLSVAWSPDGRRIAC-GSMDGTISVFDVT--RAKF--LHHLEG------HFMPVRSLVYSPVDPRVLFSA 219 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~~~l~~-~s~dg~i~i~d~~--~~~~--~~~~~~------~~~~v~~~~~~~~~~~~l~s~ 219 (315)
...+.++|+|+++++.+ .-.++.|.++++. .+.. ++.+.. .......+.++|++..++++.
T Consensus 192 --------~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 192 --------SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp --------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred --------CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 22678999999998754 5568889999987 4332 222221 112567899999655555666
Q ss_pred eCCCeEEEEeCC--CCe--eEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEEEEecC--ccceehccc-ccccceEEE
Q 021247 220 SDDTHVHMYDAE--GKS--LVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVKLWDLN--MRAAMQSMT-NHTDQVWGV 291 (315)
Q Consensus 220 ~~d~~i~~wd~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~~-~~~~~v~~~ 291 (315)
.....|.+|++. +++ .+............++++|+|++|+++. .++.|.+|+++ ++....... ..-....+|
T Consensus 264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 678899999983 233 3334444445689999999999988776 55689999774 444332221 122445566
Q ss_pred EE
Q 021247 292 SF 293 (315)
Q Consensus 292 ~~ 293 (315)
.|
T Consensus 344 ~f 345 (345)
T PF10282_consen 344 VF 345 (345)
T ss_dssp EE
T ss_pred eC
Confidence 55
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=4.6e-13 Score=105.90 Aligned_cols=247 Identities=18% Similarity=0.278 Sum_probs=170.8
Q ss_pred hhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccc--cceEEEEeCCCCCEEEEeeCCCe
Q 021247 6 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC--LGVVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 6 ~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~--~~v~~~~~~~~g~~l~s~~~d~~ 83 (315)
+.+..+||.+.|++..-.|..+ -+++.+.|.++++|--.+.........|. .++.++.+.+....|+.+-..|+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~----gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE----GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC----CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 3445689999999999888766 39999999999999533222212212233 46888999999999999999999
Q ss_pred EEEEECCCC----ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 84 VRVFDVDTN----ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 84 i~~w~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
+.-+.+... ..++....|...+..+-|+.....+ ++.+.|..+.---.+.++.+..+....+.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V-~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~------------ 158 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWV-LSTGKDKQFAWHCTESGNRLGGYNFETPA------------ 158 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeE-EEeccccceEEEeeccCCcccceEeeccC------------
Confidence 887766432 2334455677888888887665544 55666655543333333333222211110
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEEc--ccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFDV--TRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LV 236 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~ 236 (315)
+.+.+.- .+...|-..|.|-+-.+ .....+..+.+|..++.+.+|.| .+++|++|..|..+.+||+-.++ ..
T Consensus 159 --t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 159 --SALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred --CCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCccee
Confidence 0011110 13445555566555444 34456788999999999999998 67899999999999999987654 34
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
..+.+|...+..+..-+.-+.+.+++.||.|.+|+.+.
T Consensus 234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 56788999998888877778899999999999999864
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=5.4e-13 Score=112.70 Aligned_cols=255 Identities=19% Similarity=0.207 Sum_probs=150.3
Q ss_pred EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEe-eCCCeEEEEECCCCceeEE
Q 021247 19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASA-SLDSFVRVFDVDTNASIAT 97 (315)
Q Consensus 19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~-~~d~~i~~w~~~~~~~~~~ 97 (315)
.+.|+|+++ ++++++.||.|.++|+.+.+..+.++. ......++++++|++++++ ...+.+.++|.++.+.+..
T Consensus 41 ~~~~s~Dgr----~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 41 GLKFSPDGR----YLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEE-TT-SS----EEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred EEEecCCCC----EEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 356777665 688889999999999999998877653 3356789999999988765 5689999999988766554
Q ss_pred eeCC------------------c-----------cc----------------------EEEEEECCCCCeEEEEecCCCe
Q 021247 98 LEAS------------------P-----------SE----------------------VWQMQFDPKGTTLAVAGGGSAS 126 (315)
Q Consensus 98 ~~~~------------------~-----------~~----------------------v~~~~~~~~~~~~~~~~~~d~~ 126 (315)
+... . +. .....|+|++++++++......
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence 3211 0 11 1223456667777666666677
Q ss_pred EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEEEecCCCcEEEEEcccceeeeeecCCccceE
Q 021247 127 VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVR 204 (315)
Q Consensus 127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~ 204 (315)
|.++|..+++.+..+...+.....+.....|.. ....|.. .+...++.-....+.+||....+.+..+.....+ .
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~--~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l 272 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG--FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L 272 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEEEETT--TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred eEEEeeccceEEEEeeccccccccccccccCCC--cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence 888888777766655332111000000001110 1112221 2233322222335667888888888888876556 6
Q ss_pred EEEEcCCCCcEEEEE----eCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCC--CcEEEEecCccce
Q 021247 205 SLVYSPVDPRVLFSA----SDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSD--RTVKLWDLNMRAA 277 (315)
Q Consensus 205 ~~~~~~~~~~~l~s~----~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~ 277 (315)
-++-+|+ ++++... .....|.++|.++.+.+..+.... ..+..+.|+++|+.+..+..+ +.|.++|..+.+.
T Consensus 273 Fi~thP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 273 FIKTHPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp -EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred eeecCCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 7778984 5555555 456899999999987777665332 358899999999966544443 3699999999888
Q ss_pred ehccc
Q 021247 278 MQSMT 282 (315)
Q Consensus 278 ~~~~~ 282 (315)
+++++
T Consensus 352 ~~~i~ 356 (369)
T PF02239_consen 352 KKRIP 356 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87765
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=2.4e-13 Score=107.53 Aligned_cols=271 Identities=17% Similarity=0.214 Sum_probs=175.7
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc-----ceeeccccc------------cceEEEEeCCCC--C
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ-----LERTNTGHC------------LGVVSVAAHPSG--I 73 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~-----~~~~~~~h~------------~~v~~~~~~~~g--~ 73 (315)
-.+-+.+|.|...+. +|+||..+|.|.++.-+... ....+..|. ..|+.+.|.+++ .
T Consensus 24 eadiis~vef~~~Ge----~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE----RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccc----eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 356789999998886 69999999999999643211 112222232 357788888766 4
Q ss_pred EEEEeeCCCeEEEEECCCCceeE-E----eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247 74 IAASASLDSFVRVFDVDTNASIA-T----LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148 (315)
Q Consensus 74 ~l~s~~~d~~i~~w~~~~~~~~~-~----~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 148 (315)
.++....|++|++|.+....... . -+..+..+..++ +=-+..........
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr-------------------~p~~~~~~~~vea~------ 154 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR-------------------LPVEGRHDLEVEAS------ 154 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceee-------------------ceeeccccceeeee------
Confidence 66677889999999986543211 0 001111122211 11111100000000
Q ss_pred CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCCc-----cceEEEEEcCCCCcEEEEEe
Q 021247 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGHF-----MPVRSLVYSPVDPRVLFSAS 220 (315)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~ 220 (315)
....-...|...|+++.++.|.+.++++ .|=+|.+|.++--.. +..++.++ ..|++..|+|....+++=++
T Consensus 155 prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 0111234567789999999999988876 677899999863221 23334443 35788999999899999999
Q ss_pred CCCeEEEEeCCCCeeE-------EE---------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-cceehcccc
Q 021247 221 DDTHVHMYDAEGKSLV-------TA---------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-RAAMQSMTN 283 (315)
Q Consensus 221 ~d~~i~~wd~~~~~~~-------~~---------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 283 (315)
..|+|++.|++...+- .. +.+--..|.++.|+++|+++++=.. -+|++||++. .+++.+++-
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 9999999999843211 00 1111345778999999999986443 5799999964 455655544
Q ss_pred cc------------cce---EEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 284 HT------------DQV---WGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 284 ~~------------~~v---~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
|. +.| ..++|+-++.++++|+....+++|+.
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 42 333 35899999999999999999999973
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.6e-12 Score=110.14 Aligned_cols=236 Identities=17% Similarity=0.131 Sum_probs=144.5
Q ss_pred cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247 41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL 117 (315)
Q Consensus 41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (315)
.|.++|.+.... +.+..+...+....|+|+|+.|+..+.+ ..|.+|++.+++... +......+....|+|+|+.+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 467777765443 4444566778999999999988766543 369999998876533 22233445568899999988
Q ss_pred EEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEccccee
Q 021247 118 AVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAKF 192 (315)
Q Consensus 118 ~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~~ 192 (315)
+++...++ .|.+||+.+++... +.. +........|+|+|+.++..+. ++ .|+++|+.+++.
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~-------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTN-------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-ccc-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 77665544 68888988765432 110 1112345789999998876553 33 577788876654
Q ss_pred eeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-C--cE
Q 021247 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD-R--TV 267 (315)
Q Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~--~i 267 (315)
.. +...........|+|++..++++...++ .|.++|+.++........ .......|+|+|+.++..+.+ + .+
T Consensus 324 ~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 324 ER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred EE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEE
Confidence 32 2211122335679985544444443343 588899887654322221 122345899999988665543 3 46
Q ss_pred EEEecCccceehcccccccceEEEEEeeC
Q 021247 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
.+.+++. .....+..+.+.+...+|+|.
T Consensus 401 ~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 401 MLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 6667753 333334444456677778774
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=6.4e-12 Score=109.66 Aligned_cols=236 Identities=16% Similarity=0.177 Sum_probs=142.1
Q ss_pred cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeE
Q 021247 41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTL 117 (315)
Q Consensus 41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (315)
.+.++|.+.... +.+..+...+.+..|+|+|+.++-.+.+ ..|++||+.+++... +...........|+|+++.+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 566667654433 3334455678889999999988765433 358899998876432 22223334467899999988
Q ss_pred EEEecCCCe--EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEccccee
Q 021247 118 AVAGGGSAS--VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAKF 192 (315)
Q Consensus 118 ~~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~~ 192 (315)
+++...++. |.++|+.+++... +.. +.......+|+|+|+.++..+. ++ .|+++|+.+++.
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~-------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR-ITR-------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE-Ccc-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 877666664 7777887654322 111 1112456789999998876543 33 477778876654
Q ss_pred eeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC-CCc--E
Q 021247 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS-DRT--V 267 (315)
Q Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~--i 267 (315)
.. +...........|+|++..++++...++ .|.++|+.++.... +... .......|+|+|+.|+..+. ++. +
T Consensus 343 ~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 343 SR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred EE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEE
Confidence 32 2211122334689996554445444444 46667877765432 2221 12224579999997765544 343 6
Q ss_pred EEEecCccceehcccccccceEEEEEeeC
Q 021247 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
.+++.+ ++....+..+.+.+...+|+|-
T Consensus 420 ~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 420 AAVSID-GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 666764 4444445555566777788873
No 243
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.4e-14 Score=119.05 Aligned_cols=283 Identities=15% Similarity=0.192 Sum_probs=188.6
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC-------CcceeeccccccceEEEEeCCCCCEEEEeeCCCe
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD-------MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~-------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~ 83 (315)
.+|++.|-+++-....+ -++++|.|.+|++|.... .-+..+...|+.+|.++-|-.+-.++++ .|+.
T Consensus 732 ~GH~~~iRai~AidNEN----SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNEN----SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred cCcHHHhHHHHhccccc----ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 58888888877555433 599999999999997532 2245667889999999999988888765 5899
Q ss_pred EEEEECCCCceeEEeeCC--cccEEEEEECCC--CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 84 VRVFDVDTNASIATLEAS--PSEVWQMQFDPK--GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 84 i~~w~~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
|++||.--+..+...... .+.+..+..-|+ ...+++.++...+|+++|.+..+....+..-... ....
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~--------~Pna 877 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP--------GPNA 877 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC--------CCch
Confidence 999998777655432211 122222222232 3334444477899999999998877766543221 2234
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE-EeCCCCeeEEE
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM-YDAEGKSLVTA 238 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~-wd~~~~~~~~~ 238 (315)
.+++++..+.|++++++-.+|.|.+.|.++++.+..++..+.....++ .| .++.|+....|.++.+ |....+....+
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-ap-sdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCeeeec
Confidence 588999999999999999999999999999999887765443333332 23 4557777788888888 87665543333
Q ss_pred eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC-ccceehc---c--cccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN-MRAAMQS---M--TNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
......+. --...-|..|+++.....+.+|--. ......+ + ..-.+..++++--|-+.-++.|...|.|.+
T Consensus 956 ~kpppepa--hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 956 DKPPPEPA--HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cCCCCcch--hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 32211111 1112235568888877788888421 1111111 1 112356788888888888899999999876
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.55 E-value=2.1e-10 Score=95.08 Aligned_cols=255 Identities=16% Similarity=0.170 Sum_probs=161.0
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC----------CCeEEEEECCCCceeEEeeCCcc------
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL----------DSFVRVFDVDTNASIATLEASPS------ 103 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~----------d~~i~~w~~~~~~~~~~~~~~~~------ 103 (315)
++|.+.|.++.+....++.-..+- .+ ++|+|+.+..+.. +..|.+||..+.+.+..+...+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999988877665322222 24 9999987765544 78999999999999887765333
Q ss_pred -cEEEEEECCCCCeEEEEecC-CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEE-ecCCC
Q 021247 104 -EVWQMQFDPKGTTLAVAGGG-SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC-GSMDG 180 (315)
Q Consensus 104 -~v~~~~~~~~~~~~~~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~s~dg 180 (315)
....++++|+|+.++++.-. +..|-+.|+.+.+.+..+..+......+.. . -..+..+.||..+.. -..+|
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~---e---~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA---N---DTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec---C---CccEEEeecCceEEEEecCCC
Confidence 23477899999988877645 899999999999999888664321110000 0 001122233333321 12222
Q ss_pred cEEEEEcccceeeeeecC-----CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEEeec-------cc
Q 021247 181 TISVFDVTRAKFLHHLEG-----HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-----SLVTAMSG-------HA 243 (315)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~-------~~ 243 (315)
....= + . ..+.. ...+ .|.+.++.++..... |.|.+.|+.+. .....+.. ..
T Consensus 179 ~~~~~---~-~--~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 179 NPKIK---P-T--EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred ceEEe---e-e--eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 21100 0 0 00111 0112 344535566655555 99999995432 22222111 23
Q ss_pred ccEEEEEEcCCCCeEEEEe----------CCCcEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEe-CCCcEEE
Q 021247 244 SWVLSVDASPDGAAITTGS----------SDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVS-DDKSISL 311 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~i 311 (315)
+.+.-++++|+++.+.... ..+.|.++|..+++.+..+.. ...+++++++||++ +|+... .++.|.+
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 3344589999988777642 124799999999988887654 45889999999999 777555 6788999
Q ss_pred eec
Q 021247 312 YEY 314 (315)
Q Consensus 312 ~~~ 314 (315)
+|.
T Consensus 327 iD~ 329 (352)
T TIGR02658 327 FDA 329 (352)
T ss_pred EEC
Confidence 985
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=8e-12 Score=108.89 Aligned_cols=207 Identities=23% Similarity=0.252 Sum_probs=135.0
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
..|.++|..... ...+..+...+...+|+|+++.++++...+ ..|.+||+.+++....... ..
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--------------~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF--------------PG 234 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC--------------CC
Confidence 358888875443 344444556788899999999887765433 5799999987654322211 11
Q ss_pred ceEEEEECCCCCEEEE-ecCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247 160 FVLSVAWSPDGRRIAC-GSMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~-~s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~ 234 (315)
.+..++|+|+|+.|+. .+.++ .|++||+.++.. ..+..+........|+|++..+++++..++ .|+++|..+++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 2456889999987764 44444 589999887654 333344444456789984444444444333 58888887665
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCCC---cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDR---TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
.. .+..+...+....|+|++++++.++.++ .|.+||+..+... .+... .......|+|+|++|+..+.++
T Consensus 314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 43 3444455677889999999988888776 7888998875432 22222 2234568999999998777764
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=6.8e-12 Score=109.33 Aligned_cols=214 Identities=20% Similarity=0.199 Sum_probs=136.7
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (315)
..|.++|.+.... +.+..+...+.+..|+|+|++++.+..+ ..|++||+.+++... +......+...+|+|+++.
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 3577777654433 3344455678889999999998876544 479999998875533 2334455667899999998
Q ss_pred EEEEecCCC--eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEcccce
Q 021247 117 LAVAGGGSA--SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAK 191 (315)
Q Consensus 117 ~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~ 191 (315)
++++...++ .|.+||+.+++...... +........|+|+|++|+..+. ++ .|+++|+.+++
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTN--------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCC--------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 877665544 58888987654322111 1111335689999998876554 33 58888887665
Q ss_pred eeeeecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC---
Q 021247 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR--- 265 (315)
Q Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~--- 265 (315)
.. .+..+........|+|+ +++++..+.++ .|.+||+.++... .+... .......|+|+++.|+..+.++
T Consensus 314 ~~-~l~~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 314 VR-RLTFRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred EE-EeecCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcE
Confidence 33 33334445667889984 55666655554 7889998775432 22221 2234568999999887776654
Q ss_pred cEEEEecC
Q 021247 266 TVKLWDLN 273 (315)
Q Consensus 266 ~i~iwd~~ 273 (315)
.+++.+..
T Consensus 390 ~l~~~~~~ 397 (417)
T TIGR02800 390 VLGLVSTD 397 (417)
T ss_pred EEEEEECC
Confidence 34444443
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.52 E-value=4e-12 Score=98.63 Aligned_cols=254 Identities=20% Similarity=0.245 Sum_probs=166.8
Q ss_pred cchhhhhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee---cccccc---ceEEEEeCCCCCEEEE
Q 021247 4 AGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT---NTGHCL---GVVSVAAHPSGIIAAS 77 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~---~~~h~~---~v~~~~~~~~g~~l~s 77 (315)
.++..+....+..++.+.|.-........++-+-.+|.|.++..+....... +..-.. ...++.|++.+..+++
T Consensus 59 ~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~v 138 (339)
T KOG0280|consen 59 SPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFV 138 (339)
T ss_pred CccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEE
Confidence 3344445555677888899865443334678888899999997543322111 111111 3467889999999999
Q ss_pred eeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCcc
Q 021247 78 ASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDK 154 (315)
Q Consensus 78 ~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~ 154 (315)
.-.+|.+.+-+..... .+++.+.|.-+.|...|+-..+.++.+|++|+.+..||+|. ++.+.. ..
T Consensus 139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------------n~ 206 (339)
T KOG0280|consen 139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------------NS 206 (339)
T ss_pred EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------------cc
Confidence 9999999866654433 34477889999999999988888999999999999999983 222221 11
Q ss_pred CCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcc-cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 155 SSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVT-RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 155 ~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
..|...|.++.-+| ...++++|+.|-.|++||.+ -++++..-. -.+.|+-+..+|.....++.+..-+-.++-+.+.
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 22444577887776 47799999999999999998 445544322 2367899999996554444444433355555443
Q ss_pred C--e---eEEEeecccccEEEEEEcCCCCeEEEEe-CCCcEE-EE
Q 021247 233 K--S---LVTAMSGHASWVLSVDASPDGAAITTGS-SDRTVK-LW 270 (315)
Q Consensus 233 ~--~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~-iw 270 (315)
. + .......|.+-+..-+|+.....|+|++ .|+.++ +|
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 2 2 2333456666666667755545677754 344433 44
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.6e-11 Score=105.99 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=131.7
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
.|.++|.+... ...+..+...+...+|+|+|+.++++...+ ..|.+||+.+++....... ...
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--------------~g~ 244 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--------------EGL 244 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--------------CCC
Confidence 47777876544 344445566788999999999887765443 4688999987654321111 112
Q ss_pred eEEEEECCCCCEEE-EecCCC--cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCee
Q 021247 161 VLSVAWSPDGRRIA-CGSMDG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSL 235 (315)
Q Consensus 161 i~~~~~~~~~~~l~-~~s~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~ 235 (315)
.....|+|+|+.|+ +...++ .|+++|+.+++.. .+..+........|+|++..++++...++ .|+++|+.+++.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 34688999999886 444444 5888899876543 34444445566789996555555554443 577788776654
Q ss_pred EEEeecccccEEEEEEcCCCCeEEEEeCC-C--cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC-CcEEE
Q 021247 236 VTAMSGHASWVLSVDASPDGAAITTGSSD-R--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISL 311 (315)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i 311 (315)
.. +...........|+|+|+.++..+.+ + .|.++|+.+++... +.. ........|+|+|+.++..+.+ +.-+|
T Consensus 324 ~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 324 ER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred EE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 32 22112233456899999988766543 3 47888988765322 221 1122245899999998765544 44333
Q ss_pred e
Q 021247 312 Y 312 (315)
Q Consensus 312 ~ 312 (315)
|
T Consensus 401 ~ 401 (430)
T PRK00178 401 M 401 (430)
T ss_pred E
Confidence 3
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.4e-11 Score=104.08 Aligned_cols=191 Identities=22% Similarity=0.353 Sum_probs=144.6
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC--------------CCCCEEEEecCCCcE
Q 021247 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS--------------PDGRRIACGSMDGTI 182 (315)
Q Consensus 117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~l~~~s~dg~i 182 (315)
+++....||.+++||....+....+.....-.. ......+...+..+ .+-..++-|...|.|
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~----t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG----TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccC----cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 445567899999999998776655532111000 00000011111111 123467789999999
Q ss_pred EEEEcccceeeeeec--CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEE
Q 021247 183 SVFDVTRAKFLHHLE--GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITT 260 (315)
Q Consensus 183 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 260 (315)
.+|++..++....+. .|-+.|.++.++. +-..|.+++.|.++..|+.+..............+.+++++||+.++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999998877776 5888899998875 6778999999999999999999888888888888999999999999998
Q ss_pred EeCCCcEEEEecCccceehcccccccceEEEEEeeC-----CCEEE-EEeCCCcEEEeec
Q 021247 261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL-----GGRVV-SVSDDKSISLYEY 314 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~-s~~~d~~i~i~~~ 314 (315)
|+ +.|++||+++++.+.++++|..+|..+.|-.+ |.+++ +...+.-|.+|..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 87 57999999999999999999999999999988 67765 4555666666653
No 250
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.48 E-value=1.9e-10 Score=109.44 Aligned_cols=248 Identities=15% Similarity=0.141 Sum_probs=162.0
Q ss_pred EEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeC-C-------------cccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEA-S-------------PSEVWQMQFDPKGTTLAVAGGGSASVKL 129 (315)
Q Consensus 65 ~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 129 (315)
.+.+++ +|.++++-..++.|+++|.... .+..+.. . -.....++++++++.++++-..+..|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 567776 4668888888899999998644 3333322 1 1134688899988877777667789999
Q ss_pred EecCCcceeeeecCCCCCCCCCCcc----CCCCcceEEEEECC-CCCEEEEecCCCcEEEEEcccceeeeee--------
Q 021247 130 WDTATWNLIATLSIPRPEGLKPTDK----SSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHL-------- 196 (315)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~~~~~-------- 196 (315)
+|..++. +.++......+...... ...-.....++++| ++..+++.+.++.|++||..++......
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 9987643 33332111000000000 00011245799999 5666677888899999998766532110
Q ss_pred cC------CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-------------c--------ccccEEEE
Q 021247 197 EG------HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-------------G--------HASWVLSV 249 (315)
Q Consensus 197 ~~------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~--------~~~~i~~~ 249 (315)
.+ .......++++|++..++++-+.++.|++||++++....... . .-.....+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 01 112346789998666677888888999999987654221100 0 01134688
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCccceehcc-------------cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-------------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+++++|.++++-..+++|++||..++...... ...-....+++++++|+.+++-+.+++|++||.
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 99999999899999999999999865543211 112235778999999998889899999999986
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.1e-12 Score=107.67 Aligned_cols=205 Identities=15% Similarity=0.235 Sum_probs=152.6
Q ss_pred EEEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247 64 VSVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS 142 (315)
Q Consensus 64 ~~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 142 (315)
..++.+. ...+++ ++....|+-++++.|.-+..+....+.++.+..++-.. ++++|+.+|.|-.||.+....+.++.
T Consensus 137 RDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred ccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEecchhhhhheeee
Confidence 4455553 344444 44445688889999998888888888999999998765 56778889999999999877776665
Q ss_pred CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeC
Q 021247 143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASD 221 (315)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~ 221 (315)
.....+..|. ......|+++.|+.+|-.+++|+.+|.+.|||++..+++.. -.+...+|..+.|.+.+.+--+...+
T Consensus 215 ~~~~v~s~pg--~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 215 AASSVNSHPG--GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccccCCCcc--ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence 4433211111 11223489999999999999999999999999998876543 23346689999998765554455556
Q ss_pred CCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 222 DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 222 d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
...++|||-..++....+..-. .++.+++-|++.++++|-.+..+..|=+.
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEcc
Confidence 6789999999888877666433 48899999999999999988888776554
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.6e-10 Score=97.26 Aligned_cols=286 Identities=16% Similarity=0.257 Sum_probs=178.8
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEE-----eeCC-----CeE
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAAS-----ASLD-----SFV 84 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s-----~~~d-----~~i 84 (315)
.+++..++++.+. ++.-+.+..++|++..+.+........ .+..+.|+|.|.+|.+ ...+ -.+
T Consensus 35 ~~~~v~~~S~~G~-----lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-----LFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CcceeEEEcCCCc-----EEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCce
Confidence 3456666776554 777888899999987766433332222 6789999999998864 2222 337
Q ss_pred EEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceee---------eecCC-----------
Q 021247 85 RVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIA---------TLSIP----------- 144 (315)
Q Consensus 85 ~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~---------~~~~~----------- 144 (315)
++|+++++.....+......-|..+|+++... ++--..+.+.+|++...+.+. .+.+.
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl--~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESL--AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeeeccceehhheehhhhcCcccccccchhh--hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence 79999985544444443333478889888653 223345678888876533221 11110
Q ss_pred --CCCCCC--------C----CccCCCCcc----eEEEEECCCCCEE-E-Eec-C---------CCcEEEEEcccceeee
Q 021247 145 --RPEGLK--------P----TDKSSSKKF----VLSVAWSPDGRRI-A-CGS-M---------DGTISVFDVTRAKFLH 194 (315)
Q Consensus 145 --~~~~~~--------~----~~~~~~~~~----i~~~~~~~~~~~l-~-~~s-~---------dg~i~i~d~~~~~~~~ 194 (315)
...+.+ + ......+.+ -..+.|++-|.-| + +.+ - +..+++.++......-
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 000000 0 000000111 1257788766532 2 221 1 3357888776444333
Q ss_pred eecCCccceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEE
Q 021247 195 HLEGHFMPVRSLVYSPVDPRVLFSA-SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLW 270 (315)
Q Consensus 195 ~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iw 270 (315)
.+. ..++|.++.|+|....+.+.- -.--++.+||++..-+ ..+ ..++=+.+-|+|.|++++.+|-+ |.|-||
T Consensus 266 ~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 266 PLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred ecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 333 368999999999665554443 4567899999886533 222 23455678899999999888775 689999
Q ss_pred ecCccceehcccccccceEEEEEeeCCCEEEEEeC------CCcEEEeecC
Q 021247 271 DLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD------DKSISLYEYS 315 (315)
Q Consensus 271 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~i~~~~ 315 (315)
|+..++.+..+.. ...+-+.|+|||.+++++.. |..++||+|+
T Consensus 342 Dv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 342 DVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eccchhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999887776643 33455899999999987654 7899999874
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.2e-10 Score=101.73 Aligned_cols=207 Identities=19% Similarity=0.205 Sum_probs=126.3
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcc
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKF 160 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (315)
.+.++|...... ..+......+....|+|+|+.++++...+ ..|.+||+.+++....... ...
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--------------~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--------------PGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--------------CCC
Confidence 567777655433 34444566788899999999887765444 3688889877654321111 111
Q ss_pred eEEEEECCCCCEEEE-ecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCee
Q 021247 161 VLSVAWSPDGRRIAC-GSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSL 235 (315)
Q Consensus 161 i~~~~~~~~~~~l~~-~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~ 235 (315)
....+|+|+|+.|+. ...++. |+++|+.+++. ..+..+........|+|++..+++++..++ .|+++|..+++.
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 235789999998864 455664 88888877654 334444445567889996555555554444 577778776654
Q ss_pred EEEeecccccEEEEEEcCCCCeEEEEeC-CCc--EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC-CCc
Q 021247 236 VTAMSGHASWVLSVDASPDGAAITTGSS-DRT--VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD-DKS 308 (315)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~ 308 (315)
.. +..+........|+|+|++++..+. ++. |.++|+..++.. .+... .......|+|+|++|+..+. ++.
T Consensus 343 ~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 343 SR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred EE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCc
Confidence 33 2222223345689999998766554 443 455677666432 22221 11224479999998865444 444
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=5.8e-11 Score=92.28 Aligned_cols=172 Identities=21% Similarity=0.273 Sum_probs=123.0
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee--ee
Q 021247 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LH 194 (315)
Q Consensus 117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~ 194 (315)
.++-....|.|.+|..........+..-.. +......-.++.|++.+..++++-.+|.+.+-+...... .+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-------~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSS-------KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ 159 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccch-------hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc
Confidence 344456678888886543222222211000 000111245788999999999999999988665443333 34
Q ss_pred eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEE-eecccccEEEEEEcC-CCCeEEEEeCCCcEEEEe
Q 021247 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE-GKSLVTA-MSGHASWVLSVDASP-DGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~iwd 271 (315)
.++.|..+.+...|+..+++++.+|++|+.+..||++ .++.+-. ..-|...|.++.-+| .+.+++||+.|..|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 7889999999999998899999999999999999998 3333322 456888899998877 477999999999999999
Q ss_pred cC-ccceehcccccccceEEEEEeeC
Q 021247 272 LN-MRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 272 ~~-~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
.+ .++++..-+ -.+.||.+.++|-
T Consensus 240 tRnm~kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 240 TRNMGKPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred hhcccCccccCc-cccceEEEEecch
Confidence 98 566665533 3478999999885
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1.1e-11 Score=98.30 Aligned_cols=280 Identities=15% Similarity=0.260 Sum_probs=170.2
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCccee-----------------------------------e-cc
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLER-----------------------------------T-NT 57 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~-----------------------------------~-~~ 57 (315)
+++|+.+.|.+.++ .+.++....|.+|++|........+ . ..
T Consensus 84 eEKinkIrw~~~~n--~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 84 EEKINKIRWLDDGN--LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhceecCCCC--ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 46899999998775 3567777889999999754321111 0 13
Q ss_pred ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC-CceeEEeeCCc-------ccEEEEEECCCCCeEEEEecCCCeEEE
Q 021247 58 GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT-NASIATLEASP-------SEVWQMQFDPKGTTLAVAGGGSASVKL 129 (315)
Q Consensus 58 ~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~d~~i~~ 129 (315)
+|.--|++++++.|+..++++. |=.|.+|+++- .++...++..+ .-|.+..|+|....+++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 5777899999999999999875 66799999874 44555554433 237788899988777777888999999
Q ss_pred EecCCcceeee-ec-CCCCCCCCCCccC---CCCcceEEEEECCCCCEEEEecCCCcEEEEEc-ccceeeeeecCCcc--
Q 021247 130 WDTATWNLIAT-LS-IPRPEGLKPTDKS---SSKKFVLSVAWSPDGRRIACGSMDGTISVFDV-TRAKFLHHLEGHFM-- 201 (315)
Q Consensus 130 ~d~~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~-~~~~~~~~~~~~~~-- 201 (315)
-|+|...+.-. .. ...++. |.... .--..|..+.|+++|+++++-.. -+|++||+ ...+++.....|..
T Consensus 241 cDmR~~aLCd~hsKlfEeped--p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPED--PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred eechhhhhhcchhhhhccccC--CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 99985332100 00 011111 11111 11233778999999999997644 48999999 44555555544421
Q ss_pred ----------ce---EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EEeecc--cccEEEEEEcCCCCeEEEEeCCC
Q 021247 202 ----------PV---RSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV-TAMSGH--ASWVLSVDASPDGAAITTGSSDR 265 (315)
Q Consensus 202 ----------~v---~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~--~~~i~~~~~~~~~~~l~s~~~d~ 265 (315)
.| ..+.|+. ++.++++|+-....++|+...+... ..+..- ......+ ...+.+.+++...
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~ 393 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRK 393 (433)
T ss_pred HHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcc
Confidence 22 3467775 5678999999999999996654322 111111 1111111 1223455555554
Q ss_pred cEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 266 TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 266 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
...+|--. + .....+...+|+|.-+.+|.+.. ..+.||
T Consensus 394 ~~~~~vd~-------l-df~kkilh~aWhp~en~ia~aat-nnlyif 431 (433)
T KOG1354|consen 394 RDEISVDA-------L-DFRKKILHTAWHPKENSIAVAAT-NNLYIF 431 (433)
T ss_pred ccccccch-------h-hhhhHHHhhccCCccceeeeeec-CceEEe
Confidence 43332110 1 11223445679998776655443 455554
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4.8e-09 Score=84.27 Aligned_cols=281 Identities=14% Similarity=0.232 Sum_probs=174.6
Q ss_pred EEEeeC----CCcEEEEcCCCC--cce-eeccccccceEEEEeCCCCCEEEEeeC---CCeEEEEECCC--Cce--eEEe
Q 021247 33 LLTGSL----DETVKLWRPDDM--QLE-RTNTGHCLGVVSVAAHPSGIIAASASL---DSFVRVFDVDT--NAS--IATL 98 (315)
Q Consensus 33 l~sgs~----d~~v~~w~~~~~--~~~-~~~~~h~~~v~~~~~~~~g~~l~s~~~---d~~i~~w~~~~--~~~--~~~~ 98 (315)
++.|+. +.-|+.|++++. ++. .+...+...++-|.++|+++.|.++-. +|.|-.+.++. +.. +...
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 455554 467999988732 221 122345567889999999988777644 47777777765 332 2222
Q ss_pred eCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247 99 EASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS 177 (315)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s 177 (315)
.....+...+++++++++++++.-..+.|.++-++. +.+......-...+..+. ..+....+....+.|++++|++..
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEee
Confidence 222334478899999998888777789999998865 322211111111111111 112223366788999999998775
Q ss_pred CC-CcEEEEEcccceeeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--e--eEEEee------ccc
Q 021247 178 MD-GTISVFDVTRAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK--S--LVTAMS------GHA 243 (315)
Q Consensus 178 ~d-g~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~--~~~~~~------~~~ 243 (315)
.. -+|.+|++..++....-. ......+-|.|+|.+.-..+..=.+++|.+|..... + .++.+. ...
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 32 279999998665432111 223456899999954433445556899999987652 2 122111 124
Q ss_pred ccEEEEEEcCCCCeEEEEeC-CCcEEEEecCc--cc--eehcccccccceEEEEEeeCCCEEEEEeCC-CcEEEeec
Q 021247 244 SWVLSVDASPDGAAITTGSS-DRTVKLWDLNM--RA--AMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-KSISLYEY 314 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~ 314 (315)
.+..+|.++|+|++|.++.. ...|.+|.+.. ++ .+.....+........|+|.|++|+++.++ .+|.+|..
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 56778999999999876643 23577787653 22 222333445557889999999999888776 57888764
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=1.1e-09 Score=104.30 Aligned_cols=252 Identities=14% Similarity=0.155 Sum_probs=160.2
Q ss_pred EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccc--------------cccceEEEEeCCCCCEE-EEeeCCCe
Q 021247 19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTG--------------HCLGVVSVAAHPSGIIA-ASASLDSF 83 (315)
Q Consensus 19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~--------------h~~~v~~~~~~~~g~~l-~s~~~d~~ 83 (315)
.+++.+... .++++-+.++.|++++.+.. ....+.+ +-.....+++++++..| ++-...+.
T Consensus 572 gvavd~~~g---~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 572 KLAIDLLNN---RLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred eEEEECCCC---eEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 566655322 26777778889999987543 3222221 11235778898887754 44445678
Q ss_pred EEEEECCCCceeEEeeCC-----------------cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247 84 VRVFDVDTNASIATLEAS-----------------PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP 146 (315)
Q Consensus 84 i~~w~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 146 (315)
|+++|+.++. +.++... -...+.++++|++..++++...+++|++||..++... .+.....
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 9999987754 3333110 1234678999977778888888999999998765432 2211100
Q ss_pred C-CC-CCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEcccceeeeeecC---------------------Cccc
Q 021247 147 E-GL-KPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEG---------------------HFMP 202 (315)
Q Consensus 147 ~-~~-~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~---------------------~~~~ 202 (315)
. .. ........-.....++++|+++.| ++-+.++.|++||+.++.......+ ....
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0 00 000000111235689999998844 5667789999999976543211000 0112
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-------------cccccEEEEEEcCCCCeEEEEeCCCcEEE
Q 021247 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-------------GHASWVLSVDASPDGAAITTGSSDRTVKL 269 (315)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~s~~~d~~i~i 269 (315)
...+++++ ++.++++-..++.|++||..++....... ++-.....++++++|+++++-+.+++|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 35788887 56788888899999999998775543221 11235678999999999999999999999
Q ss_pred EecCccce
Q 021247 270 WDLNMRAA 277 (315)
Q Consensus 270 wd~~~~~~ 277 (315)
||+++++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99987653
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.5e-10 Score=100.35 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=126.2
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe--EEEEecCC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT--LAVAGGGS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
+.|.+.|...+.. ..+.........-+|+|+|+. +++....+ .+|.+.++.+++.......+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~------------- 230 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ------------- 230 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-------------
Confidence 3577777665443 333334445667789999875 33343333 46888888766543322111
Q ss_pred CcceEEEEECCCCCEEEEecC-CC--c--EEEEEcccc---eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEE
Q 021247 158 KKFVLSVAWSPDGRRIACGSM-DG--T--ISVFDVTRA---KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHM 227 (315)
Q Consensus 158 ~~~i~~~~~~~~~~~l~~~s~-dg--~--i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~ 227 (315)
......+|+|||+.|+..+. +| . +..|++..+ +................|+|++..++++...++. |.+
T Consensus 231 -g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 231 -GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred -CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 11335789999998876442 23 2 344676542 2222222222334567999955545555555665 444
Q ss_pred EeCCC-CeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEE
Q 021247 228 YDAEG-KSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSV 303 (315)
Q Consensus 228 wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 303 (315)
++... +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+..++... +......+....|+|||++|+..
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEE
Confidence 44432 22234444444566788999999988765543 368999998776543 32223356778999999988754
Q ss_pred eC-C--CcEEEeec
Q 021247 304 SD-D--KSISLYEY 314 (315)
Q Consensus 304 ~~-d--~~i~i~~~ 314 (315)
+. + ..|.++++
T Consensus 389 ~~~~g~~~L~~vdl 402 (428)
T PRK01029 389 AGNSNESELYLISL 402 (428)
T ss_pred ECCCCCceEEEEEC
Confidence 33 3 35655554
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.1e-10 Score=97.06 Aligned_cols=241 Identities=13% Similarity=0.063 Sum_probs=138.9
Q ss_pred cEEEEcCCCCcceeeccccccceEEEEeCCCCCE--E-EEeeCC--CeEEEEECCCCceeEEeeCCcccEEEEEECCCCC
Q 021247 41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGII--A-ASASLD--SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGT 115 (315)
Q Consensus 41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~--l-~s~~~d--~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (315)
.|.+.|.+..... .+........+-.|+|+|.. + .....+ ..|++.++.+++... +...++.....+|+|+|+
T Consensus 166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 4556666544332 23333345567789999974 2 233333 458888888775433 222344455689999999
Q ss_pred eEEEEecCCC----eEEEEecCCcc--eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCc--EEEEE
Q 021247 116 TLAVAGGGSA----SVKLWDTATWN--LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGT--ISVFD 186 (315)
Q Consensus 116 ~~~~~~~~d~----~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~--i~i~d 186 (315)
.++++...++ .+..|++..+. ....+. ..........+|+|||+.|+..+ .+|. |++++
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt------------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL------------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEee------------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 8887764433 34446655321 111110 00111234679999999887654 4564 44445
Q ss_pred ccc-ceeeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247 187 VTR-AKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS 263 (315)
Q Consensus 187 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 263 (315)
+.. +.....+..+...+....|+|++..++++...+ ..|.+||..+++.... ......+....|+|+|+.|+..+.
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEEC
Confidence 432 222334444445667889999554444444433 4699999988765433 322334667899999987764332
Q ss_pred ---CCcEEEEecCccceehcccccccceEEEEEeeCC
Q 021247 264 ---DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLG 297 (315)
Q Consensus 264 ---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (315)
...|.++|+..++..... ...+.+...+|+|..
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 346888898776543332 233455667888753
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=3.4e-12 Score=119.92 Aligned_cols=214 Identities=15% Similarity=0.222 Sum_probs=161.2
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC
Q 021247 71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK 150 (315)
Q Consensus 71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 150 (315)
.++.+.....++..--|..+.+.. .++.+-..|.++.-||...+ +++|+.||.+++|.-..+..+..+..
T Consensus 2179 ~s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt------- 2248 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRT------- 2248 (2439)
T ss_pred ccccCCcccCCccccceeccccee--EeecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeec-------
Confidence 344455455555554455443322 23445566788888888775 57899999999999877666655432
Q ss_pred CCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe---CCCeEEE
Q 021247 151 PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHM 227 (315)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~ 227 (315)
.....++.+.|+.+|+.+..+-.||.+.+|... .+.....+.|+....++.|-. ..+++++ +++.+.+
T Consensus 2249 -----~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~l 2319 (2439)
T KOG1064|consen 2249 -----AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCL 2319 (2439)
T ss_pred -----cCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccc
Confidence 122457889999999999999999999999986 566677778888888888863 4566654 5788999
Q ss_pred EeCCC---CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEe
Q 021247 228 YDAEG---KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVS 304 (315)
Q Consensus 228 wd~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 304 (315)
||..- ..++. ..|.+..+++++-|..++|++||.+|.|++||++.+...++++. +. -..++++++
T Consensus 2320 wDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s 2387 (2439)
T KOG1064|consen 2320 WDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS 2387 (2439)
T ss_pred hhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC
Confidence 99642 23443 78999999999999999999999999999999999887777654 33 356899999
Q ss_pred CCCcEEEeecC
Q 021247 305 DDKSISLYEYS 315 (315)
Q Consensus 305 ~d~~i~i~~~~ 315 (315)
..|.|+||.++
T Consensus 2388 s~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2388 SEGNIKIWRLS 2398 (2439)
T ss_pred cccceEEEEcc
Confidence 99999999874
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=2e-11 Score=109.39 Aligned_cols=186 Identities=18% Similarity=0.264 Sum_probs=142.2
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeEEeeCCccc----EEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247 71 SGIIAASASLDSFVRVFDVDTNASIATLEASPSE----VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP 146 (315)
Q Consensus 71 ~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 146 (315)
....++.+..+..+-+||...+.....+...... ...+.++++ +..+++|+.-++|.+|+...
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~------------ 164 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHE------------ 164 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccc------------
Confidence 4557777788888999998877655444332211 112223333 33456778889999998752
Q ss_pred CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247 147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPVRSLVYSPVDPRVLFSASDDTHV 225 (315)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 225 (315)
..++....+|...|-.+.|+.+|+++++.|+|.++++|++.+.+... ..-+|...+..+.|+|. .+++++.|.+.
T Consensus 165 -dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc 240 (967)
T KOG0974|consen 165 -DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC 240 (967)
T ss_pred -cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence 11222456788889999999999999999999999999999887765 66789999999999984 89999999999
Q ss_pred EEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 226 HMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 226 ~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
++|+.... .+..+.+|. ..|+.++..++....+|++.|+.+++|++..
T Consensus 241 rvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99976544 334667774 4599999999999999999999999999854
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.3e-10 Score=94.72 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=148.2
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeEEeeCC---cccEEEEEE------CC-------------CCCeEEEEecCCCeE
Q 021247 70 PSGIIAASASLDSFVRVFDVDTNASIATLEAS---PSEVWQMQF------DP-------------KGTTLAVAGGGSASV 127 (315)
Q Consensus 70 ~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~---~~~v~~~~~------~~-------------~~~~~~~~~~~d~~i 127 (315)
|...+++....||.+|+|+...++..+.+... .+...+..| +| .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999988766555321 122222222 23 133455667778999
Q ss_pred EEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEE
Q 021247 128 KLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV 207 (315)
Q Consensus 128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 207 (315)
.+|+...++....+... .|...+.++.++.+-..|.+++.|..+..|+....+.++........+.++.
T Consensus 83 ~~ys~~~g~it~~~st~-----------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTD-----------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred EEEEecCCeEEEEEecC-----------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 99999988877766432 2344588899999889999999999999999999999999998888899999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCC-----CCeE-EEEeCCCcEEEEecCc
Q 021247 208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD-----GAAI-TTGSSDRTVKLWDLNM 274 (315)
Q Consensus 208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l-~s~~~d~~i~iwd~~~ 274 (315)
.+|+ +..+++++ +.|++||+++++.+..+.+|.++|..+.|--. |.++ .+...+.-+.+|-+..
T Consensus 152 is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9994 77777766 58999999999999999999999999998776 5554 5556666788887654
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=2.5e-09 Score=91.89 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=155.0
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEE----
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVW---- 106 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~---- 106 (315)
..++.++.|+.+..+|.++++........ ..+.+.... .+..++.+..++.++.||.++++.+...........
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 35667777888888887777665443211 111111111 234556677789999999999887766544322111
Q ss_pred -EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEE
Q 021247 107 -QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 185 (315)
Q Consensus 107 -~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~ 185 (315)
..... +. .++.+..++.+..+|.++++.+.......+.+........ .......+ .+..++.++.+|.++.+
T Consensus 184 ~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~--~~~~~p~~--~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 184 ASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV--DVDGDPVV--DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh--ccCCccEE--ECCEEEEEEcCCEEEEE
Confidence 00111 12 3456677899999999998877655432211100000000 00001111 24577778889999999
Q ss_pred EcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccc-cEEEEEEcCCCCeEEEEeCC
Q 021247 186 DVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHAS-WVLSVDASPDGAAITTGSSD 264 (315)
Q Consensus 186 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d 264 (315)
|+.+++.+-..... ....... .+..++.++.++.+..+|..+++.+-....... ....... .+..+++++.+
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCC
Confidence 99988765444311 1111111 234677778899999999988866533321111 1111112 35688899999
Q ss_pred CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 265 RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 265 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
|.|+++|..+++.+..+..+...+++--... ++.|+.++.||.|..|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 9999999999988777665554433322222 3569999999999776
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=6.8e-11 Score=93.83 Aligned_cols=251 Identities=18% Similarity=0.237 Sum_probs=171.4
Q ss_pred cceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee-E-EeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247 51 QLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI-A-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVK 128 (315)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 128 (315)
.+.+.+.||.+.++....-|-..-+.+++.|.++|+|-..+.... . ..-..+.++.++.+++... .++.|-.+|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence 355667899999998888888888999999999999976553221 1 2223467788999988765 456788888888
Q ss_pred EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEE
Q 021247 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVY 208 (315)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 208 (315)
-+.+... ..+.. .+.....|..++..+.|+....++++.+.|..+..--.+.+..+....-.. +-.+..+
T Consensus 94 efs~sed--fnkm~-------~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~ 163 (404)
T KOG1409|consen 94 EFALSED--FNKMT-------FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQF 163 (404)
T ss_pred EEEhhhh--hhhcc-------hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCce
Confidence 7765421 00010 111123456678889999888899999988776554444443322211000 0001111
Q ss_pred cCCCCcEEEEEeCCCeEEEEe--CCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce-ehcccccc
Q 021247 209 SPVDPRVLFSASDDTHVHMYD--AEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA-MQSMTNHT 285 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~ 285 (315)
. -.+...|...+.+.+-. ...-.++..+.+|.+.+.++.|.|..+.|.+|..|..|.+||+--++. .....+|.
T Consensus 164 d---~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 164 D---ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred e---eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 0 01333444445544332 334456778889999999999999999999999999999999975443 34567898
Q ss_pred cceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 286 DQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
+.|..+..-+--+.+++++.||.|.+|+++
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999988888778889999999999999974
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=1.6e-10 Score=90.79 Aligned_cols=253 Identities=18% Similarity=0.293 Sum_probs=166.1
Q ss_pred cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc-e----eEEeeCCc------------ccEEEEEECC-CCCeEEEE
Q 021247 59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA-S----IATLEASP------------SEVWQMQFDP-KGTTLAVA 120 (315)
Q Consensus 59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~-~----~~~~~~~~------------~~v~~~~~~~-~~~~~~~~ 120 (315)
...-|+++-|...|.++++|...|.|-++.-+... | +..++.|. ..|..+.|.. .+..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568899999999999999999999998755432 1 11233332 2466677653 34333344
Q ss_pred ecCCCeEEEEecCCccee--e------eecCCCCCCC--------------------CCC--ccCCCCcceEEEEECCCC
Q 021247 121 GGGSASVKLWDTATWNLI--A------TLSIPRPEGL--------------------KPT--DKSSSKKFVLSVAWSPDG 170 (315)
Q Consensus 121 ~~~d~~i~~~d~~~~~~~--~------~~~~~~~~~~--------------------~~~--~~~~~~~~i~~~~~~~~~ 170 (315)
.+.|.+|++|-+...+.. . .+..+..... .|. -...|...|.++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 567999999998654221 1 1111111000 000 113456678899999988
Q ss_pred CEEEEecCCCcEEEEEcccce---eeeeecCCc-----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE------
Q 021247 171 RRIACGSMDGTISVFDVTRAK---FLHHLEGHF-----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV------ 236 (315)
Q Consensus 171 ~~l~~~s~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------ 236 (315)
+.++++ .|-+|.+|.+.-.. .+..++.|+ ..|++..|+|....++.=++..|.|++-|++...+-
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877765 67789999886332 133444554 357888999988888888889999999998743211
Q ss_pred --EE--------eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc-ceehccccc------------ccceE---E
Q 021247 237 --TA--------MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR-AAMQSMTNH------------TDQVW---G 290 (315)
Q Consensus 237 --~~--------~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~------------~~~v~---~ 290 (315)
.+ +.+-...|..+.|+++|+++++-+. -+|++||.+.. .++.+++-| .+.|. .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 01 1122356788999999999886554 47999999864 456665444 23443 5
Q ss_pred EEEeeCCCEEEEEeCCCcEEEee
Q 021247 291 VSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 291 ~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+.||.+.+.+++|+.....-||-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 78999989999999887766653
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.3e-11 Score=116.03 Aligned_cols=196 Identities=17% Similarity=0.255 Sum_probs=141.0
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec--cccccceEEEEeCCCCCEEEEeeCCCeEEEEECC
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN--TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD 90 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~--~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~ 90 (315)
|-+.|-++.-.|... +-+||+.||.|++|.....+..... .|. ..|+.+.|+.+|+.+..+..||.+-+|...
T Consensus 2207 ~v~~v~r~~sHp~~~----~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP----YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ccCceeeecCCCCCc----eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 345666666555443 6899999999999987655433322 234 778999999999999999999999999987
Q ss_pred CCceeEEeeCCcccEEEEEECCCCCeEEEEe--cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 91 TNASIATLEASPSEVWQMQFDPKGTTLAVAG--GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
.+.....+.|.......+|-.+ .++-+| .+++.+.+||..-.... .... ..|....+++++.|
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~-----------s~v~-~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMN-----------SLVH-TCHDGGATVLAYAP 2346 (2439)
T ss_pred -CcceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCccc-----------ceee-eecCCCceEEEEcC
Confidence 4556666777776667666542 222222 35688999996421100 0001 23455689999999
Q ss_pred CCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 239 (315)
....|++|+.+|.|++||++..+.++.+.. +. ...++++++..|.|+||++....+++.+
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcC
Confidence 999999999999999999988776655543 22 4568999999999999999876555443
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1e-09 Score=92.58 Aligned_cols=251 Identities=18% Similarity=0.355 Sum_probs=157.2
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC--CEEE-----EeeCCCeEEEEECC
Q 021247 18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG--IIAA-----SASLDSFVRVFDVD 90 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g--~~l~-----s~~~d~~i~~w~~~ 90 (315)
|+.+|+++.. ++.=-..+.|.+|+....+... .+-|...+..+.++|.+ ..++ ..|.-+.+|+|...
T Consensus 129 W~~qfs~dEs-----l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 129 WVPQFSIDES-----LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred cccccccchh-----hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 6788877653 3333345789999876633211 12255677778887763 3333 24666789999886
Q ss_pred CCce---eEEeeCCcccEEEEEECCCCCeEEEEec-----------CCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247 91 TNAS---IATLEASPSEVWQMQFDPKGTTLAVAGG-----------GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156 (315)
Q Consensus 91 ~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
.... +..-......-..+.|++.|+-+++..+ +..++.++++...... +.++
T Consensus 203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~--V~L~------------ 268 (566)
T KOG2315|consen 203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS--VPLL------------ 268 (566)
T ss_pred cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--EecC------------
Confidence 3221 1111111222346778888776554332 2246777776522222 2211
Q ss_pred CCcceEEEEECCCCCEEEE--ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCC
Q 021247 157 SKKFVLSVAWSPDGRRIAC--GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAE 231 (315)
Q Consensus 157 ~~~~i~~~~~~~~~~~l~~--~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~ 231 (315)
...+|.++.|+|+++.|++ |.+-..+-+||++ +..+..+. +++=+++-|+| .+++++.+|- -|.+-+||..
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence 2345999999999988765 5678899999985 44444443 45667888999 4556555543 4789999999
Q ss_pred CCeeEEEeecccccEEEEEEcCCCCeEEEEeC------CCcEEEEecCccceehcccccccceEEEEEeeC
Q 021247 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSS------DRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
+.+++.....- ..+-++|+|+|++++|+.. |+.++||+.. |+.++...-.+ ..+.+.|-|.
T Consensus 345 n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 345 NRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred chhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeeec
Confidence 88777666532 3455799999999999877 6789999986 44443321111 5777777764
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=1.5e-08 Score=84.15 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=138.8
Q ss_pred CCCcEEEEcCCCCcceeecccc-------ccceEEEEeCCCCCEEEEee--CCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247 38 LDETVKLWRPDDMQLERTNTGH-------CLGVVSVAAHPSGIIAASAS--LDSFVRVFDVDTNASIATLEASPSEVWQM 108 (315)
Q Consensus 38 ~d~~v~~w~~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~~--~d~~i~~w~~~~~~~~~~~~~~~~~v~~~ 108 (315)
.+..|.+||..+.+....++-- ......+.++|+|++++... .+..+-+.|+.+++.+..+.... .....
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence 5889999999999887765421 12234788999999877554 37899999999999888776532 22222
Q ss_pred EECCCCCeEEEEecCCCeEEEEecCC-cce-eeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEEE
Q 021247 109 QFDPKGTTLAVAGGGSASVKLWDTAT-WNL-IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVF 185 (315)
Q Consensus 109 ~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~ 185 (315)
..++... ++. ..|+......+.. ++. ..+..+-... ..+ ....+ .|.+ +|+++....+ |.|.+.
T Consensus 154 ~t~e~~~-~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~-~~~----v~~rP----~~~~~dg~~~~vs~e-G~V~~i 220 (352)
T TIGR02658 154 PTANDTF-FMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPE-DEY----LINHP----AYSNKSGRLVWPTYT-GKIFQI 220 (352)
T ss_pred EecCCcc-EEE--eecCceEEEEecCCCceEEeeeeeecCC-ccc----cccCC----ceEcCCCcEEEEecC-CeEEEE
Confidence 2322222 211 1233333322221 111 1111000000 000 00111 3344 7888877766 999999
Q ss_pred Ecccc-----eeeeeecC-------CccceEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCeeEEEeecccc
Q 021247 186 DVTRA-----KFLHHLEG-------HFMPVRSLVYSPVDPRVLFSAS---------DDTHVHMYDAEGKSLVTAMSGHAS 244 (315)
Q Consensus 186 d~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~ 244 (315)
|+... ..+..+.. ......-++++|++.++++... ..+.|.++|.++++.+..+.- ..
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~ 299 (352)
T TIGR02658 221 DLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GH 299 (352)
T ss_pred ecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CC
Confidence 96432 22222211 1122334899986666555331 125899999999998887763 34
Q ss_pred cEEEEEEcCCCC-eEEEEe-CCCcEEEEecCccceehcc
Q 021247 245 WVLSVDASPDGA-AITTGS-SDRTVKLWDLNMRAAMQSM 281 (315)
Q Consensus 245 ~i~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~ 281 (315)
.+..++++|+++ +|++.. .++.|.++|..+++.++++
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 688999999999 776555 6788999999999888776
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=6.9e-09 Score=87.62 Aligned_cols=273 Identities=16% Similarity=0.252 Sum_probs=168.6
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeC-----------CCeEEE
Q 021247 18 WAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASL-----------DSFVRV 86 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-----------d~~i~~ 86 (315)
+=|.|+|-+. +|+|=-.- -|.+|--......+.+. | -.|.-+.|||..++|++=+. -..+.|
T Consensus 214 tyv~wSP~GT----YL~t~Hk~-GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGT----YLVTFHKQ-GIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCce----EEEEEecc-ceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 4578999775 67775554 46789766555444443 3 36889999999999998543 256999
Q ss_pred EECCCCceeEEeeC--CcccEE-EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 87 FDVDTNASIATLEA--SPSEVW-QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 87 w~~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
||+.+|.....+.. .+..+| -..|+.++++++-- .-..|.||+.....++..-.+ .-..|..
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Ksl-------------ki~gIr~ 351 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSL-------------KISGIRD 351 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeeccccc-------------CCccccC
Confidence 99999987776655 333344 56799998876533 337899998876443322111 1123778
Q ss_pred EEECCCCCEEEEecC-----CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEE----------eCCCeEEEE
Q 021247 164 VAWSPDGRRIACGSM-----DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSA----------SDDTHVHMY 228 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~~w 228 (315)
..|+|.++.||-=+. -.++-+..+.+.+.+.....++-.=..+-|-. .+.+|..- +.-..+-|+
T Consensus 352 FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEE
Confidence 899998887775332 12466666666665554443322222344444 23333221 111234556
Q ss_pred eCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCc-c---ceehcccccccceEEEEEeeCCCEEE
Q 021247 229 DAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNM-R---AAMQSMTNHTDQVWGVSFRPLGGRVV 301 (315)
Q Consensus 229 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~ 301 (315)
.++...+......-...|...+|-|.|..+++-+.+ .++++|.+++ . +.+..+. ....+.+-|+|.|+.++
T Consensus 431 rireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 431 RIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVV 508 (698)
T ss_pred EeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEE
Confidence 655544333333345678899999999876655443 4688887763 1 2233333 35677899999999987
Q ss_pred EE---eCCCcEEEeecC
Q 021247 302 SV---SDDKSISLYEYS 315 (315)
Q Consensus 302 s~---~~d~~i~i~~~~ 315 (315)
.+ |.-|.+..+|.+
T Consensus 509 va~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDTD 525 (698)
T ss_pred EEEecccccceEEEecc
Confidence 54 446788888753
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=3.8e-08 Score=81.88 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=123.4
Q ss_pred eCCCcEEEEcCCCCcceeeccc------cccc--e---EEE-EeC-CCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcc
Q 021247 37 SLDETVKLWRPDDMQLERTNTG------HCLG--V---VSV-AAH-PSGIIAASASLDSFVRVFDVDTNASIATLEASPS 103 (315)
Q Consensus 37 s~d~~v~~w~~~~~~~~~~~~~------h~~~--v---~~~-~~~-~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 103 (315)
+..|.|.+||+++..+.+.-.+ ...+ + .-+ .|+ .+|.+++..| .|...+.+...+..++. .+..
T Consensus 284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~ 360 (668)
T COG4946 284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV--GKKG 360 (668)
T ss_pred ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc--CCCC
Confidence 5568899999988776553221 0001 1 011 122 2678888877 46677777766655543 2344
Q ss_pred cEEEEEECCCCCeEEEEecCCC-eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcE
Q 021247 104 EVWQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI 182 (315)
Q Consensus 104 ~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i 182 (315)
.|....+..+++.+ +.|..|| .+.+||.++++..... ..-..|..+..+++|+.++++.....+
T Consensus 361 ~VrY~r~~~~~e~~-vigt~dgD~l~iyd~~~~e~kr~e--------------~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 361 GVRYRRIQVDPEGD-VIGTNDGDKLGIYDKDGGEVKRIE--------------KDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred ceEEEEEccCCcce-EEeccCCceEEEEecCCceEEEee--------------CCccceEEEEEcCCCcEEEEEcCceEE
Confidence 57766776666644 4567777 8999999886543221 112348899999999999999888999
Q ss_pred EEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCee
Q 021247 183 SVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT----HVHMYDAEGKSL 235 (315)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~ 235 (315)
.+.|+.++.....-+....-|+.+.|+| ++++++=+--+| .|++||+.+++.
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999887665556667899999998 778887665554 689999876543
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=1.8e-08 Score=86.57 Aligned_cols=263 Identities=14% Similarity=0.057 Sum_probs=156.1
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEE
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQF 110 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~ 110 (315)
..++.++.+|.|.-+|..+++......-......... .++..++.++.++.+..+|..+++.+...............
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 3688889999999999888877654322211111111 24567777888999999999999887665433221111111
Q ss_pred CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc
Q 021247 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 190 (315)
Q Consensus 111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~ 190 (315)
.+..+ +.+..++.+..+|.++++.+.......+.. ...... +... .+..++.+..++.+..+|++++
T Consensus 144 --~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~----~~~~~~----sp~~--~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 144 --ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPAL----TLRGSA----SPVI--ADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred --ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCce----eecCCC----CCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 13334 445678999999999998887765432110 000000 1111 1246778888899999999888
Q ss_pred eeeeeecCCcc----c---eEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEe
Q 021247 191 KFLHHLEGHFM----P---VRSLVYSP-VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS 262 (315)
Q Consensus 191 ~~~~~~~~~~~----~---v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 262 (315)
+.+-....... . ...+.-+| ..+..++.++.++.+..||.++++.+-.... .. ..... ..+..++.++
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~ 286 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD 286 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC
Confidence 76533221000 0 00000011 0234677788899999999988866543331 11 11122 2355777888
Q ss_pred CCCcEEEEecCccceehccccc-ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 263 SDRTVKLWDLNMRAAMQSMTNH-TDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 263 ~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.||.+..+|..+++.+-..... .....+... .+.+|+.++.+|.|.++|.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 9999999999888754332111 111122122 4678999999999999874
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=2.2e-07 Score=74.91 Aligned_cols=267 Identities=16% Similarity=0.216 Sum_probs=167.7
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCC---CcEEEEcCCC--Ccceee--ccccccceEEEEeCCCCCEEEEeeC-CCe
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLD---ETVKLWRPDD--MQLERT--NTGHCLGVVSVAAHPSGIIAASASL-DSF 83 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d---~~v~~w~~~~--~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~~~-d~~ 83 (315)
.+...++=++|.|..+ .|+++..+ |.|..|..+. +.+... ......+.+.++++++|++++++.. -|.
T Consensus 37 ~~~~nptyl~~~~~~~----~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~ 112 (346)
T COG2706 37 AELGNPTYLAVNPDQR----HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS 112 (346)
T ss_pred cccCCCceEEECCCCC----EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce
Confidence 5566777788888664 57777654 6676666553 444322 2222335589999999998887754 478
Q ss_pred EEEEECCCCcee----EEeeCCcc----------cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 84 VRVFDVDTNASI----ATLEASPS----------EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 84 i~~w~~~~~~~~----~~~~~~~~----------~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
|.++-++....+ ..+. |.+ .+-...+.|+++++++..-+.-.|.+|++..+++.......-
T Consensus 113 v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v---- 187 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV---- 187 (346)
T ss_pred EEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc----
Confidence 999998663222 2222 222 267788999999988877777789999998665432221111
Q ss_pred CCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccc--ee--eeeec------CCccceEEEEEcCCCCcEEEE
Q 021247 150 KPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRA--KF--LHHLE------GHFMPVRSLVYSPVDPRVLFS 218 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~--~~--~~~~~------~~~~~v~~~~~~~~~~~~l~s 218 (315)
......+.|.|+|++++..+. -.+++|.+|..... +. ++.+. .......+|..+| ++++|.+
T Consensus 188 ------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYa 260 (346)
T COG2706 188 ------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYA 260 (346)
T ss_pred ------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEE
Confidence 111225689999999988654 46889999988653 22 22211 1233456788888 6677766
Q ss_pred EeC-CCeEEEEeCC--CCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCC-cEEEEecC--ccceehccc-ccccceE
Q 021247 219 ASD-DTHVHMYDAE--GKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDR-TVKLWDLN--MRAAMQSMT-NHTDQVW 289 (315)
Q Consensus 219 ~~~-d~~i~~wd~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~i~iwd~~--~~~~~~~~~-~~~~~v~ 289 (315)
+.. ...|.+|.+. ++. .+.....+......+.++|.+++|+++..++ .|.+|..+ +++...... .......
T Consensus 261 sNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pv 340 (346)
T COG2706 261 SNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPV 340 (346)
T ss_pred ecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcE
Confidence 643 3468888754 332 2233334555678899999999998887765 48888765 344332222 2233445
Q ss_pred EEEEe
Q 021247 290 GVSFR 294 (315)
Q Consensus 290 ~~~~s 294 (315)
+|.|.
T Consensus 341 cv~f~ 345 (346)
T COG2706 341 CVKFL 345 (346)
T ss_pred EEEEc
Confidence 66664
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.23 E-value=2.2e-08 Score=83.81 Aligned_cols=277 Identities=16% Similarity=0.183 Sum_probs=175.4
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCc---------------EEEEcCCCCcceeeccccccc--eE-EEEeCCCCCEEE
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDET---------------VKLWRPDDMQLERTNTGHCLG--VV-SVAAHPSGIIAA 76 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~---------------v~~w~~~~~~~~~~~~~h~~~--v~-~~~~~~~g~~l~ 76 (315)
..|.-+.|+|.++ +|.+.+..+. +.+||...+.+...+.+...+ .. -+.|+.+..+++
T Consensus 72 ~~V~~~~fSP~~k----YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 72 PDVKYLDFSPNEK----YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred CCceecccCcccc----eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 5677888888765 7888877554 889998888777766554443 33 667887777766
Q ss_pred EeeCCCeEEEEECCCCceeEEe-eCCcccEEEEEECCCCCe--EEE----EecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 77 SASLDSFVRVFDVDTNASIATL-EASPSEVWQMQFDPKGTT--LAV----AGGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 77 s~~~d~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--~~~----~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
=.. ...+++.++..+.....+ ......+....|+|.++. +++ ..+..+++++|.+.....+.+-++-+-
T Consensus 148 Rvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~--- 223 (561)
T COG5354 148 RVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV--- 223 (561)
T ss_pred hhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---
Confidence 442 235888887322211111 111345677778886432 222 135567888888765544433322111
Q ss_pred CCCccCCCCcceEEEEECCCCCEEEEec-----------CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE-EE
Q 021247 150 KPTDKSSSKKFVLSVAWSPDGRRIACGS-----------MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV-LF 217 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s-----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~ 217 (315)
.-..+.|++.|++|++-- .+..+++++++........ .-.++|..+.|.|...++ ++
T Consensus 224 ----------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 224 ----------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred ----------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEE
Confidence 113678888888765421 1245788888643332222 457899999999965544 34
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCccceeh-cccccccceEEEEE
Q 021247 218 SASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNMRAAMQ-SMTNHTDQVWGVSF 293 (315)
Q Consensus 218 s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~ 293 (315)
+|-.+..+.++|+++. +..... ...=+.+.|+|.+++++.++-| |.|.+||...+.... .+.+ ....-+.|
T Consensus 293 ~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~w 367 (561)
T COG5354 293 SGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDW 367 (561)
T ss_pred ecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeec
Confidence 5567889999999876 333322 2223456799999999987776 579999987654443 3333 34455789
Q ss_pred eeCCCEEEEEe------CCCcEEEeecC
Q 021247 294 RPLGGRVVSVS------DDKSISLYEYS 315 (315)
Q Consensus 294 s~~~~~l~s~~------~d~~i~i~~~~ 315 (315)
+|++.++.+.- .|..|+||++.
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEec
Confidence 99999876533 37789999974
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=4.2e-09 Score=91.59 Aligned_cols=276 Identities=14% Similarity=0.190 Sum_probs=181.5
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC---------------cceeeccccccceEEEEeCCCCCEEEEe
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM---------------QLERTNTGHCLGVVSVAAHPSGIIAASA 78 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~---------------~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 78 (315)
.-...|++|.-. ..+++.|+.||.+++....+. .+.+.+.||...|.-+.|+...+.|.+.
T Consensus 14 nvkL~c~~WNke----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CceEEEEEEccc----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 356789999754 458999999999999975431 1234567999999999999999999999
Q ss_pred eCCCeEEEEECCCCceeE--EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCC
Q 021247 79 SLDSFVRVFDVDTNASIA--TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSS 156 (315)
Q Consensus 79 ~~d~~i~~w~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (315)
..+|.|.+|-+-.++-.. ......+-|.+++|+.+|..+.++ -.||.|.+=.+.. +.+..-.+
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv-YeDGavIVGsvdG-NRIwgKeL------------- 154 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIV-YEDGAVIVGSVDG-NRIWGKEL------------- 154 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEE-EccCCEEEEeecc-ceecchhc-------------
Confidence 999999999998775322 122234568899999999887654 4667665544332 22211100
Q ss_pred CCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-------eeeee----cCCccceEEEEEc-------CCCCcEEEE
Q 021247 157 SKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-------FLHHL----EGHFMPVRSLVYS-------PVDPRVLFS 218 (315)
Q Consensus 157 ~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-------~~~~~----~~~~~~v~~~~~~-------~~~~~~l~s 218 (315)
.......+.|++|.+.++.+-.+|.+.+||...+- +.... ......+..+.|. |.+...|+.
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 01124578999999999888899999999964321 00011 1111123344443 335568889
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC---------cEEEEecCccceehcccccccceE
Q 021247 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR---------TVKLWDLNMRAAMQSMTNHTDQVW 289 (315)
Q Consensus 219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~v~ 289 (315)
+-..|.+.+-...+......+. -.-.|....|+++|..|+.+|.+. .|.++. ..|+.+.++......|+
T Consensus 235 cy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred EEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 9999988776544322221111 125678899999999999998753 344443 33566667766677899
Q ss_pred EEEEeeCCCEEEEEeCCCcEEE
Q 021247 290 GVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 290 ~~~~s~~~~~l~s~~~d~~i~i 311 (315)
+++|-..|-+++- ..|+.|.+
T Consensus 313 ~lsWEg~gLriA~-Avdsfiyf 333 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAI-AVDSFIYF 333 (1189)
T ss_pred eeEEcCCceEEEE-EecceEEE
Confidence 9999876655543 34455543
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.22 E-value=7.8e-09 Score=79.75 Aligned_cols=244 Identities=13% Similarity=0.079 Sum_probs=148.4
Q ss_pred EEEEEeecCCC-CCcEEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEEeCCC-CCEEEEeeCCCeEEEEECCCCce
Q 021247 18 WAVTWVPATET-RPALLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVAAHPS-GIIAASASLDSFVRVFDVDTNAS 94 (315)
Q Consensus 18 ~~v~~~~~~~~-~~~~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~~~~~-g~~l~s~~~d~~i~~w~~~~~~~ 94 (315)
.++.|-|..-. -..+|+.|+.-|...+|.+.+.+ ..+....|...|.-+.-..+ ...+..++.|.++++.++..+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34556664321 12479999999999999987544 33444445544433221111 23455678899999988876543
Q ss_pred eEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcc-eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE
Q 021247 95 IATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWN-LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI 173 (315)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 173 (315)
...+-...-.+..+.++++++.. ++-++...|..|.+.... .+..+.. .+ ..+.--+..|+.....+
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~-~~Vgds~~Vf~y~id~~sey~~~~~~------a~-----t~D~gF~~S~s~~~~~F 218 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWG-SSVGDSRRVFRYAIDDESEYIENIYE------AP-----TSDHGFYNSFSENDLQF 218 (344)
T ss_pred cceeeccccceeeeEEcCCCceE-EEecCCCcceEEEeCCccceeeeeEe------cc-----cCCCceeeeeccCcceE
Confidence 22221111237788999998865 445667888888876522 1211111 00 11123467889989999
Q ss_pred EEecCCCcEEEEEcccceee-----eeecCCccceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCCCeeEEEee-------
Q 021247 174 ACGSMDGTISVFDVTRAKFL-----HHLEGHFMPVRSLVYSPVDPR-VLFSASDDTHVHMYDAEGKSLVTAMS------- 240 (315)
Q Consensus 174 ~~~s~dg~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~------- 240 (315)
|++++||.+.|||++..... ..-..|++.++.+.|+|.+.- +|+-.-.-+.+++-|+++....+.+.
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence 99999999999999754322 122358999999999985443 44444456789999998875443332
Q ss_pred ccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 241 GHA-SWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 241 ~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
.|. ..|..-.|+.++..+.+...+ .+.-|++.+
T Consensus 299 ~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cccccccccccccCCCcccccccch-hhheeeccc
Confidence 222 226666666666555444433 244555544
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.4e-08 Score=85.88 Aligned_cols=278 Identities=15% Similarity=0.215 Sum_probs=163.3
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCC-----------CcEEEEcCCCCcceeecccc--ccce-EEEEeCCCCCEEEEeeCC
Q 021247 16 SVWAVTWVPATETRPALLLTGSLD-----------ETVKLWRPDDMQLERTNTGH--CLGV-VSVAAHPSGIIAASASLD 81 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d-----------~~v~~w~~~~~~~~~~~~~h--~~~v-~~~~~~~~g~~l~s~~~d 81 (315)
.|-=+.|+|.. .+|+|-|.. ..+.|||..++.+.+.++.. ...+ .-..||.+++++|....|
T Consensus 251 ~Vq~idfSP~E----kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~ 326 (698)
T KOG2314|consen 251 GVQFIDFSPNE----KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN 326 (698)
T ss_pred CceeeecCCcc----ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence 45556666654 478887752 46899999998877766542 2222 234789999999987765
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeecCCCCCCCCCCccCCC
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSS 157 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (315)
+|.|++..+-..+..-......|....|+|.++.+++-.-.. ..+.+..+.++..+.+.++..-
T Consensus 327 -sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV----------- 394 (698)
T KOG2314|consen 327 -SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV----------- 394 (698)
T ss_pred -eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee-----------
Confidence 588988766433322222335577778999877554422211 2233333333333322221110
Q ss_pred CcceEEEEECCCCCEEEEecC-------CC---cEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC--CeE
Q 021247 158 KKFVLSVAWSPDGRRIACGSM-------DG---TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD--THV 225 (315)
Q Consensus 158 ~~~i~~~~~~~~~~~l~~~s~-------dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i 225 (315)
.=..+-|-.+|.+|+.--. .| .+-|+.++.....-....-...|..++|.|.+.++.+-.+.+ .++
T Consensus 395 --sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 395 --SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred --eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence 0123556667777765321 11 244444443332212222345788999999766655544443 567
Q ss_pred EEEeCCC----CeeEEEeecccccEEEEEEcCCCCeEEEEe---CCCcEEEEecCccceehc-ccccccceEEEEEeeCC
Q 021247 226 HMYDAEG----KSLVTAMSGHASWVLSVDASPDGAAITTGS---SDRTVKLWDLNMRAAMQS-MTNHTDQVWGVSFRPLG 297 (315)
Q Consensus 226 ~~wd~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~ 297 (315)
.+|..+. .+++..+.. ...+.+-|+|.|++++.+. ..|.+.++|........+ ...|. ..+.+.|.|.|
T Consensus 473 sfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG 549 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG 549 (698)
T ss_pred eEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC
Confidence 8887663 123333332 3467899999999887764 468899999875332222 22343 45678999999
Q ss_pred CEEEEEeC------CCcEEEeec
Q 021247 298 GRVVSVSD------DKSISLYEY 314 (315)
Q Consensus 298 ~~l~s~~~------d~~i~i~~~ 314 (315)
+|+++++. |.-.+||++
T Consensus 550 RYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 550 RYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred CEEEEeeehhhhccccceEEEEe
Confidence 99998876 445566654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.2e-07 Score=89.25 Aligned_cols=270 Identities=19% Similarity=0.284 Sum_probs=164.1
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcC------------CCCc---c--------eeeccc----------
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRP------------DDMQ---L--------ERTNTG---------- 58 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~------------~~~~---~--------~~~~~~---------- 58 (315)
.-+..|.+++|+|+.. +|+....++++.+-.- +... . ..++.|
T Consensus 118 ~vd~GI~a~~WSPD~E----lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~ 193 (928)
T PF04762_consen 118 SVDSGILAASWSPDEE----LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQL 193 (928)
T ss_pred EEcCcEEEEEECCCcC----EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhc
Confidence 4467899999999886 5777777777765531 0000 0 001100
Q ss_pred --------------cccceEEEEeCCCCCEEEEeeC------CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEE
Q 021247 59 --------------HCLGVVSVAAHPSGIIAASASL------DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLA 118 (315)
Q Consensus 59 --------------h~~~v~~~~~~~~g~~l~s~~~------d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 118 (315)
+...-..++|-.||.++|..+. -+.+|||+-+ |....+-+.-.+--..++|.|+|+.++
T Consensus 194 ~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA 272 (928)
T PF04762_consen 194 RDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIA 272 (928)
T ss_pred cCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEE
Confidence 2224467889999999987654 3679999965 444333333333344789999999665
Q ss_pred EEec--CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee
Q 021247 119 VAGG--GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 196 (315)
Q Consensus 119 ~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~ 196 (315)
.+-- ....|.+|.-. |-....+.++.. .....|..+.|++++..||.-..|. |.+|-..+-....+.
T Consensus 273 ~~q~~~~~~~VvFfErN-GLrhgeF~l~~~---------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERN-GLRHGEFTLRFD---------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred EEEEcCCCcEEEEEecC-CcEeeeEecCCC---------CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 4332 12345555532 222333333321 1233478999999999999876554 999988766544332
Q ss_pred cC---CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEc----CCC-CeEEEEeCCCcEE
Q 021247 197 EG---HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDAS----PDG-AAITTGSSDRTVK 268 (315)
Q Consensus 197 ~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~l~s~~~d~~i~ 268 (315)
.- ....+..+.|+|.++..|.....++.+..++.. +.+..+ |+. ..+++. ...+++
T Consensus 342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVI-DG~~ll 405 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVI-DGNKLL 405 (928)
T ss_pred EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEE-eCCeEE
Confidence 21 223345599999888888888776776665532 112222 111 122222 223466
Q ss_pred EEecCccce---e--hcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 269 LWDLNMRAA---M--QSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 269 iwd~~~~~~---~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+-.++..-. + ..+. -..+|.+++|++++..+++...||+|.+|.+
T Consensus 406 lTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 666654321 1 1222 2368999999999989999999999999985
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=1.6e-08 Score=84.55 Aligned_cols=276 Identities=13% Similarity=0.126 Sum_probs=171.9
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC----------
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS---------- 82 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~---------- 82 (315)
-.-++..+.|+|.+. +|++ ..-..|.+|..........+. ...|..+.|+|.+++|.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~----~l~~-~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGT----YLFS-EHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcch----heeh-hhccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCC
Confidence 345788888998775 3444 444568889765544333332 34688999999999998754333
Q ss_pred -----eEEEEECCCCceeEEeeCCccc--EE-EEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCcc
Q 021247 83 -----FVRVFDVDTNASIATLEASPSE--VW-QMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDK 154 (315)
Q Consensus 83 -----~i~~w~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (315)
.+.+||+.++..+..+.....+ .| -+.|+-+.++.+-. ....+.++++ +.+... ... +
T Consensus 104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~----~p~-------~ 169 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEE----HPF-------K 169 (561)
T ss_pred ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCcccc----Cch-------h
Confidence 4999999999988887766665 66 77888877754322 3357888886 332210 000 0
Q ss_pred CCCCcceEEEEECCCCC--EEEE-----ecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe-------
Q 021247 155 SSSKKFVLSVAWSPDGR--RIAC-----GSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS------- 220 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~--~l~~-----~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------- 220 (315)
......|....|+|.++ .|+. ....+++++|.+..++.+..-.--+-.-..+.|.+.+..+++-.-
T Consensus 170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence 01123478888998643 4443 346778999998766554332211122245778775554443221
Q ss_pred ---CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE--eCCCcEEEEecCccceehcccccccceEEEEEee
Q 021247 221 ---DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG--SSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP 295 (315)
Q Consensus 221 ---~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 295 (315)
.+..+++++++...+.... .-.++|.+..|.|.++-+++. -.+-.+.++|++.. ....+ ..+.=+.+.|||
T Consensus 250 syfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp 325 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP 325 (561)
T ss_pred ceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC
Confidence 1345788888765544433 457889999999988766544 46788999998754 22222 222333456788
Q ss_pred CCCEEEEEeCC---CcEEEee
Q 021247 296 LGGRVVSVSDD---KSISLYE 313 (315)
Q Consensus 296 ~~~~l~s~~~d---~~i~i~~ 313 (315)
.+++++.+|-| |.|-+|+
T Consensus 326 ~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred cccEEEEecCCccccceEEec
Confidence 88877776655 5666665
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=9.6e-11 Score=98.74 Aligned_cols=212 Identities=17% Similarity=0.250 Sum_probs=150.4
Q ss_pred ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCC-------ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTN-------ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVK 128 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 128 (315)
+.||...|..++.-.+.+.+++++.|+++++|.++.. .+..++..|..+|..+-|-.+-+++ + +-|+.|.
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~--ScD~giH 807 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-A--SCDGGIH 807 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-e--eccCcce
Confidence 4689888988887778889999999999999998753 3566788899999999998776654 2 4589999
Q ss_pred EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccceeeeeec-----CCccc
Q 021247 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLHHLE-----GHFMP 202 (315)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~~~~-----~~~~~ 202 (315)
+||---+.++....-... .+....|.++. +-+...+.+| +...+|+++|.+.+.....++ +.+..
T Consensus 808 lWDPFigr~Laq~~dapk--------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPK--------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred eecccccchhHhhhcCcc--------cCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 999765555432211111 11111132222 2244555544 788999999999887766654 33456
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEE-EecCccceehcc
Q 021247 203 VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKL-WDLNMRAAMQSM 281 (315)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~ 281 (315)
+++++..| .++.++.+-..|.|.+.|.++++.+...+........++ .|..+.|+....|.++.+ |..-.+....+.
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 88999887 677899999999999999999988776655444444444 355677888888999988 977666554443
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=2.7e-10 Score=98.99 Aligned_cols=282 Identities=18% Similarity=0.236 Sum_probs=175.9
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-cceeeccccc--cceEEEEeCCCC---CEEEEeeCCCeEEEE
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-QLERTNTGHC--LGVVSVAAHPSG---IIAASASLDSFVRVF 87 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-~~~~~~~~h~--~~v~~~~~~~~g---~~l~s~~~d~~i~~w 87 (315)
...+.++.-+|.+.. ++.++.-|-. +.|.+.. ...+.+ -|. -.|-..+|+|.. ..+++.+.. .-.+|
T Consensus 24 ~~~~~a~si~p~grd----i~lAsr~gl~-i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiw 96 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRD----IVLASRQGLY-IIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIW 96 (1081)
T ss_pred cCcccceeeccccch----hhhhhhcCeE-EEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcc-hhhhh
Confidence 457778888888765 6777765543 3344322 111111 121 134455565543 344444443 45588
Q ss_pred ECCCCc--eeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcceEE
Q 021247 88 DVDTNA--SIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 88 ~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
++.... .+. .+-+|...+..+.|+|+...++++++.|..+..||+++-... ..+ ......-..
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------------~~w~s~asq 163 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------------SSWRSAASQ 163 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------------ecccccCce
Confidence 876432 333 345677889999999999999999999999999999863211 111 111112346
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeec
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSG 241 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~ 241 (315)
+.|+-....+.+.+..+.|++||++.+ .++..+++|...|+.+.|....-..+.+++.|++++.||..... .-.....
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 788765555566667778999999865 56788889999999999987655678999999999999976432 2222223
Q ss_pred ccccEEEEEEcCCCC--eEEEEeCCCcEEE---------EecCc-cceehcccccccceEEEEEeeCC----------CE
Q 021247 242 HASWVLSVDASPDGA--AITTGSSDRTVKL---------WDLNM-RAAMQSMTNHTDQVWGVSFRPLG----------GR 299 (315)
Q Consensus 242 ~~~~i~~~~~~~~~~--~l~s~~~d~~i~i---------wd~~~-~~~~~~~~~~~~~v~~~~~s~~~----------~~ 299 (315)
...+|+.-.+-|-|. ++.---.+..|.+ |+... -.+++++.+|.+.|...-|-..+ -.
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence 345566556666332 2211111123333 33332 24678889998877654443322 25
Q ss_pred EEEEeCCCcEEEeecC
Q 021247 300 VVSVSDDKSISLYEYS 315 (315)
Q Consensus 300 l~s~~~d~~i~i~~~~ 315 (315)
|++=+.|.++|+|-++
T Consensus 324 LVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 324 LVTWSKDQTLRLWPID 339 (1081)
T ss_pred EEEeecCCceEeeecc
Confidence 8999999999999753
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5.3e-08 Score=85.60 Aligned_cols=226 Identities=16% Similarity=0.132 Sum_probs=144.9
Q ss_pred cchhhhhhccccceEEEEEeecCC--------CCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCC---CC
Q 021247 4 AGLKSVENAHEESVWAVTWVPATE--------TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHP---SG 72 (315)
Q Consensus 4 ~~~~~~~~~h~~~v~~v~~~~~~~--------~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~---~g 72 (315)
.|..++..-|...|+.|.|.|... ....+|+++.-.|.|.+||.........+..|..++..++|-+ +.
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 456677789999999999998631 1335788888889999999887776667777888999888854 33
Q ss_pred -CEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCC-CeEEEEecCCCeEEEEecC-Ccc---eeeeecCCCC
Q 021247 73 -IIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKG-TTLAVAGGGSASVKLWDTA-TWN---LIATLSIPRP 146 (315)
Q Consensus 73 -~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~d~~-~~~---~~~~~~~~~~ 146 (315)
..|++-..-.++-+||..+|+.+...........+..++|-. +.+.+.+ ..|.+.+-+.- ..+ ..+.+.+..+
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecC
Confidence 566666777899999999999999888887888889999865 3444444 34555444332 111 1111111111
Q ss_pred --C----------CCCCCccCCCCcc---eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247 147 --E----------GLKPTDKSSSKKF---VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211 (315)
Q Consensus 147 --~----------~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 211 (315)
. +...........+ ...++|+|.-+.++-......+.++|++-...+....-..+.+.-+.+-|.
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD 283 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence 0 0000000001111 224677886555555556778999999877666655444444555566664
Q ss_pred C-CcEEEEEeCCCeEEEEeC
Q 021247 212 D-PRVLFSASDDTHVHMYDA 230 (315)
Q Consensus 212 ~-~~~l~s~~~d~~i~~wd~ 230 (315)
. ...|++.-.||.+.+|-.
T Consensus 284 ~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CCcceEEEEecCCeEEEEEe
Confidence 2 335677777888777754
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.19 E-value=3.1e-07 Score=74.08 Aligned_cols=222 Identities=16% Similarity=0.185 Sum_probs=143.9
Q ss_pred EEEeCC-CCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC-CCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247 65 SVAAHP-SGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD-PKGTTLAVAGGGSASVKLWDTATWNLIATLS 142 (315)
Q Consensus 65 ~~~~~~-~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 142 (315)
...|.+ ++.++++--..+.|+.|+..++.... +.... ...+.+. ++ ..++++. . +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~-~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVAD-S-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEE-T-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEE-c-CceEEEecCCCcEEEEee
Confidence 456776 77788887788999999998875533 33222 5677777 55 4454543 3 455666988775544443
Q ss_pred CCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC--------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCc
Q 021247 143 IPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD--------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPR 214 (315)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 214 (315)
.+.. .......+.+++.|+|+..++.... |.+..++.. ++..... ......+.++|+|++..
T Consensus 78 ~~~~--------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDG--------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EETT--------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSE
T ss_pred ccCC--------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchh
Confidence 2111 0123347899999999976765433 567778876 4433222 23445689999996555
Q ss_pred EEEEEeCCCeEEEEeCCC--Cee-----EEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247 215 VLFSASDDTHVHMYDAEG--KSL-----VTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 215 ~l~s~~~d~~i~~wd~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
++++-+..+.|..|+... ..+ ...+....+..-.++++.+|++.++.-..+.|.+++.+ ++.+..+......
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~ 226 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR 226 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC
Confidence 667888889999999752 211 11222223347789999999988888889999999988 7777776665568
Q ss_pred eEEEEEe-eCCCEEEEE
Q 021247 288 VWGVSFR-PLGGRVVSV 303 (315)
Q Consensus 288 v~~~~~s-~~~~~l~s~ 303 (315)
+++++|. |+.+.|+..
T Consensus 227 ~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEESTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 9999994 666666543
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=5.1e-08 Score=84.25 Aligned_cols=208 Identities=13% Similarity=0.042 Sum_probs=122.7
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCe-EEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT-LAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
.|.+=|..... .+.+... .....-.|+|+++. ++++... ...|.++|+.+++....... ..
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--------------~g 233 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--------------QG 233 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--------------CC
Confidence 44444443332 2323223 36778899999985 5544332 46799999987655433221 11
Q ss_pred ceEEEEECCCCCEEEE-ecC--CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCe
Q 021247 160 FVLSVAWSPDGRRIAC-GSM--DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKS 234 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~-~s~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~ 234 (315)
......|+|||+.++. .+. +..|+++|+.++.. ..+..+........|+|++.+++++....+ .|.+.|+.+++
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 2446779999987754 333 34688889877653 334333322345579996666666665444 57778887765
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCC---------CcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSD---------RTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
....... ... ...|+|+|+.++-.+.. ..|.+.|+..+... .+... .......|+|||+.|+....
T Consensus 313 ~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 313 VEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 5332221 111 24899999987666543 25777788776542 23322 22335789999998865554
Q ss_pred C-CcEEEe
Q 021247 306 D-KSISLY 312 (315)
Q Consensus 306 d-~~i~i~ 312 (315)
+ +.-.|+
T Consensus 388 ~~~~~~L~ 395 (419)
T PRK04043 388 LGNQSALG 395 (419)
T ss_pred cCCcEEEE
Confidence 3 333343
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=92.74 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=117.6
Q ss_pred EEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc----eeee
Q 021247 119 VAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA----KFLH 194 (315)
Q Consensus 119 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~----~~~~ 194 (315)
++.+.+.++.+-|+.++-.. ....+.-|.++.|...++.+..|..+|.|..+|++.. ....
T Consensus 228 fs~G~sqqv~L~nvetg~~q---------------sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ---------------SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred ecccccceeEEEEeeccccc---------------ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 45567788888888764221 1112233667788888899999999999999999865 2222
Q ss_pred eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEEeecccccEEE--EEEcCCCCeEEEEeCCCcEEE
Q 021247 195 HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL---VTAMSGHASWVLS--VDASPDGAAITTGSSDRTVKL 269 (315)
Q Consensus 195 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~s~~~d~~i~i 269 (315)
..--|...|+++..-...++.|++.+.+|+|++||.+--+. +.++.+|...-.- +-..+....++++|.|...||
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 22337778888887766778999999999999999886555 7788888543322 335666778899999999999
Q ss_pred EecCccceehccccc----ccceEEEEEee
Q 021247 270 WDLNMRAAMQSMTNH----TDQVWGVSFRP 295 (315)
Q Consensus 270 wd~~~~~~~~~~~~~----~~~v~~~~~s~ 295 (315)
|.++.+..+.+++-. +..+++++|.-
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EecccCceeeccCCCCccccccccceehhc
Confidence 999999887776432 23566777753
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.7e-09 Score=89.08 Aligned_cols=248 Identities=18% Similarity=0.162 Sum_probs=167.7
Q ss_pred hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCC---CcceeeccccccceEEEEeCCCCCEEEEeeC-CCeEEE
Q 021247 11 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASL-DSFVRV 86 (315)
Q Consensus 11 ~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-d~~i~~ 86 (315)
..|.+.|+.|.-.-+ .++.++|.||.++.|.... -+..+.+..|-..+.+++.+.+|.++.|++. |..+|+
T Consensus 6 ymhrd~i~hv~~tka-----~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA-----KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred hcccceeeeEeeehh-----heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 469999999865432 2799999999999997643 2344556778889999999999999999777 999999
Q ss_pred EECCCCceeEEeeC--CcccEEEEEECCCC--CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 87 FDVDTNASIATLEA--SPSEVWQMQFDPKG--TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 87 w~~~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
+|+++-..+.-++. -++.+.. ..+|.. ..++++.-.++.+.++|-+...+. ....+..|..+|.
T Consensus 81 fDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------DGYFKKLHFSPVK 148 (558)
T ss_pred EEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------cceecccccCceE
Confidence 99987655433322 2222221 122221 145555566788999997643211 1112334566799
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEccc------ceeeeee---------cCCccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTR------AKFLHHL---------EGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 227 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~------~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 227 (315)
.+.++|-+..+++.-..|.|..|.... .+....+ ........++.|+| .+..+.+-+.|..|++
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRG 227 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEE
Confidence 999999999999999999999998762 1111111 12334567899999 5567777779999999
Q ss_pred EeCCCCeeEEEee--------------------------------cccc-cEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 228 YDAEGKSLVTAMS--------------------------------GHAS-WVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 228 wd~~~~~~~~~~~--------------------------------~~~~-~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
++.+++.+++.+. .|.. .-+.+.|+..+.+|+-|+-=| |++.++.+
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 9988875543221 1211 223566888888888777655 67777765
Q ss_pred cce
Q 021247 275 RAA 277 (315)
Q Consensus 275 ~~~ 277 (315)
...
T Consensus 307 n~v 309 (558)
T KOG0882|consen 307 NTV 309 (558)
T ss_pred CeE
Confidence 443
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=2.2e-09 Score=93.34 Aligned_cols=231 Identities=16% Similarity=0.269 Sum_probs=160.6
Q ss_pred ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCc---------------eeEEeeCCcccEEEEEECCCCCeEEEEecCC
Q 021247 60 CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA---------------SIATLEASPSEVWQMQFDPKGTTLAVAGGGS 124 (315)
Q Consensus 60 ~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 124 (315)
.....++.|+....++++|+.||.+++..+.+.. .-+++++|...|..+.|+.+...+ .+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL-TtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL-TTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc-cccCCC
Confidence 3457889999999999999999999999886532 124678899999999999876654 567788
Q ss_pred CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeee-eecCCccce
Q 021247 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH-HLEGHFMPV 203 (315)
Q Consensus 125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~-~~~~~~~~v 203 (315)
|-|.+|-+-.+........ ...+..|.+++|+.+|..++....||.|.+=.+..++... .+++. -.
T Consensus 93 GlIiVWmlykgsW~EEMiN-----------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l 159 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN-----------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LL 159 (1189)
T ss_pred ceEEEEeeecccHHHHHhh-----------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--ec
Confidence 9999998866554433221 2235568999999999999999999999988887666543 23322 12
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------e-EE---EeecccccEEEEEEc--------CCCCeEEEEeCC
Q 021247 204 RSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-------L-VT---AMSGHASWVLSVDAS--------PDGAAITTGSSD 264 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~-~~---~~~~~~~~i~~~~~~--------~~~~~l~s~~~d 264 (315)
..+.|++ +.+.++.+-..|.+++||.++.- . +. .+......|..+.|. |+...|+.+-.+
T Consensus 160 ~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 160 AHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred cceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 3677888 56677777788999999987531 1 11 111122335555553 466688888888
Q ss_pred CcEEEEecCc-cceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 265 RTVKLWDLNM-RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 265 ~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
|.+.|-.-.. ..+.-. .-.-.+..+.|+++|..|+.+|.|.
T Consensus 239 Gr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCcc
Confidence 8876653222 222211 1124677889999999999888753
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.14 E-value=5.5e-08 Score=76.03 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=99.9
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-------CccceEEEEEcCCC-----CcEEEEEeCCCeEEEE
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVD-----PRVLFSASDDTHVHMY 228 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~~w 228 (315)
=+.++|+||+..||.+...|.|++||+...... .+.. -...|..+.|.+.. ...|+.-.-+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 467999999999999999999999999754332 2221 12456667675432 2345666666666655
Q ss_pred eCC-----CCeeEEE--ee-cccccEEEEEEcCCCCeEEEEeCC-C----------cEEEEecCccce------------
Q 021247 229 DAE-----GKSLVTA--MS-GHASWVLSVDASPDGAAITTGSSD-R----------TVKLWDLNMRAA------------ 277 (315)
Q Consensus 229 d~~-----~~~~~~~--~~-~~~~~i~~~~~~~~~~~l~s~~~d-~----------~i~iwd~~~~~~------------ 277 (315)
-+. +.+.... +. .+...|.++.++|..++|+.||.. . =+..|.+-.+.+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 532 1122222 12 236689999999998877766542 1 145665422111
Q ss_pred ---------ehcc--------cccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 278 ---------MQSM--------TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 278 ---------~~~~--------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
++.. ....+.|..+.+||||..||+...+|+|.||++.
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 0000 0123568899999999999999999999999873
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.14 E-value=2.7e-09 Score=81.86 Aligned_cols=202 Identities=17% Similarity=0.238 Sum_probs=113.8
Q ss_pred eEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc------------ceeeccccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 17 VWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ------------LERTNTGHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 17 v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~------------~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
+..+.++... .|+++..++.+.....-... ..+.+..|..+-.+-+.+-.++.++++..||.+
T Consensus 39 ~~~~~~v~~~-----~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~ 113 (319)
T KOG4714|consen 39 LSKVSLSAEY-----ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSL 113 (319)
T ss_pred EEEeechhhh-----eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceE
Confidence 6666666533 47777777766655432111 112222333332223334456788999999999
Q ss_pred EEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 85 RVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 85 ~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
-+.+.+....+. .+......--+.++...++.+ . .++-|.++..|-.- ...+ .+...+.+. ......+.+
T Consensus 114 ~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i-~-s~~~g~~n~~d~~~---a~~~--~p~~t~~~~--~~~~~~v~~ 184 (319)
T KOG4714|consen 114 AVFSTDKDLALMSRIPSIHSGSASRKICRHGNSI-L-SGGCGNWNAQDNFY---ANTL--DPIKTLIPS--KKALDAVTA 184 (319)
T ss_pred EEEechHHHhhhhhcccccccccccceeecccEE-e-cCCcceEeecccee---eecc--ccccccccc--ccccccchh
Confidence 999876522111 110000000111122233322 2 22333333322111 0000 011111111 111223888
Q ss_pred EEECCC-CCEEEEecCCCcEEEEEcccceee-eeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 164 VAWSPD-GRRIACGSMDGTISVFDVTRAKFL-HHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 164 ~~~~~~-~~~l~~~s~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
++-+|. .+.+++|+.||.+-+||.+..... ..+..|+.+++.+-|+|.++..|++++.||.+..||..+
T Consensus 185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 888885 556788999999999999876433 345789999999999999999999999999999999765
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.6e-07 Score=81.13 Aligned_cols=193 Identities=13% Similarity=0.070 Sum_probs=117.6
Q ss_pred ceEEEEeCCCCCE-EEEeeC---CCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecC--CCeEEEEecCCc
Q 021247 62 GVVSVAAHPSGII-AASASL---DSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGG--SASVKLWDTATW 135 (315)
Q Consensus 62 ~v~~~~~~~~g~~-l~s~~~---d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~~d~~~~ 135 (315)
....-.|+|+|+. ++-.+. +..|+++|+.+++...... .++......|+|+|+.++++... +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778899999984 553333 3569999998876544333 44556677899999988776544 357888888766
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CC--cEEEEEcccceeeeeecCCccceEEEEEcCCC
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DG--TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 212 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (315)
+.......+ .......|+|||+.|+-.+. .+ .|+++|+.+++......... ....|+|++
T Consensus 268 ~~~~LT~~~--------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG 330 (419)
T PRK04043 268 TLTQITNYP--------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYK 330 (419)
T ss_pred cEEEcccCC--------------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCC
Confidence 533211110 01224579999998765543 23 58888887766533222111 124899965
Q ss_pred CcEEEEEeCC--------CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC-Cc--EEEEecCc
Q 021247 213 PRVLFSASDD--------THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD-RT--VKLWDLNM 274 (315)
Q Consensus 213 ~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~--i~iwd~~~ 274 (315)
..++++.... ..|.+.|+.++... .+... .......|+|+|+.++-...+ +. +.+.+++.
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 5555555433 36888898877543 33322 122357899999976554433 33 44555543
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.4e-09 Score=83.84 Aligned_cols=258 Identities=16% Similarity=0.167 Sum_probs=147.1
Q ss_pred EEEEcCCCCcceeeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEE
Q 021247 42 VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120 (315)
Q Consensus 42 v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 120 (315)
|++.+..+.+....+++|...|..++|+|... ++..++.+.+|++.|+++...+..+..+ ..+|+++|+-+...++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 56666555555556778889999999999887 7889999999999999999888888766 889999999988888899
Q ss_pred ecCCCeEEEEecCCcceee-eecCCCCCCCCCCccCCCCcceEEEEE------CCCCCEEEEecCCCcEEEEEcc--cce
Q 021247 121 GGGSASVKLWDTATWNLIA-TLSIPRPEGLKPTDKSSSKKFVLSVAW------SPDGRRIACGSMDGTISVFDVT--RAK 191 (315)
Q Consensus 121 ~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~s~dg~i~i~d~~--~~~ 191 (315)
|..+|.|.+||++.-+-.. .+.- .....+|..++. .+.|..|+..+.+ +..|... .+.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a-----------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVA-----------NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC 320 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhh-----------hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence 9999999999998632110 0000 000111222222 2234444444333 3334332 111
Q ss_pred eeeeecC-CccceEEEEEcCCCCcEEEEEeCCC------eEEEE-eCCCCeeEE-Eeecc-cccE------EEEEEcCCC
Q 021247 192 FLHHLEG-HFMPVRSLVYSPVDPRVLFSASDDT------HVHMY-DAEGKSLVT-AMSGH-ASWV------LSVDASPDG 255 (315)
Q Consensus 192 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~------~i~~w-d~~~~~~~~-~~~~~-~~~i------~~~~~~~~~ 255 (315)
....+.. -.+...++..++....+|++.-.+. .+..+ |...+..+. .-..+ .++- ..+.-.++.
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 1111111 1223444555543334444443321 11110 111111111 11111 0000 011112333
Q ss_pred C-eEEEEeCCCcEEEEecCccceehcccccccceEEEEEe-eCCCEEEEEeCCCcEEEeec
Q 021247 256 A-AITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR-PLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 256 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~i~i~~~ 314 (315)
. ++..++..+.+.+||..+.+.+++++-. .+|..+... -+|+-++..=.|..++||..
T Consensus 401 n~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 401 NYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred cEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEec
Confidence 4 4456667778999999999999888654 677666433 34554555556677888875
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=5e-07 Score=85.12 Aligned_cols=292 Identities=16% Similarity=0.219 Sum_probs=174.9
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCC--cEEEEcCCCCc---ceeecc-----ccccceEEEEeCCCCCEEEEeeCCCeE
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDE--TVKLWRPDDMQ---LERTNT-----GHCLGVVSVAAHPSGIIAASASLDSFV 84 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~--~v~~w~~~~~~---~~~~~~-----~h~~~v~~~~~~~~g~~l~s~~~d~~i 84 (315)
..+...+|.+..+. .++++++... .|.+-...... ..-... .....|.++.+-++...++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~--i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDS--IYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCe--EEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceE
Confidence 45677777665432 2445544443 34443322211 111111 234679999999999999999999999
Q ss_pred EEE----ECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCC-------------
Q 021247 85 RVF----DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPE------------- 147 (315)
Q Consensus 85 ~~w----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------------- 147 (315)
-+. +.... .+.....-...|.+++|+|++..++++. +++++.+.. ++.+.+....+....
T Consensus 100 ~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT-~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVT-GEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEe-CCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCc
Confidence 998 44332 2333444456799999999998776654 456666653 344444433322110
Q ss_pred ---------CC-------CCCcc------CCCCcceEEEEECCCCCEEEEecC---C---CcEEEEEcccceeeeeecCC
Q 021247 148 ---------GL-------KPTDK------SSSKKFVLSVAWSPDGRRIACGSM---D---GTISVFDVTRAKFLHHLEGH 199 (315)
Q Consensus 148 ---------~~-------~~~~~------~~~~~~i~~~~~~~~~~~l~~~s~---d---g~i~i~d~~~~~~~~~~~~~ 199 (315)
+. .+... ....+.-..++|-.||.+||+.+. . ..+++|+.+ |.....-..-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 00 00000 002223468999999999998874 3 469999965 5443332222
Q ss_pred ccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCC---eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 200 FMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
.+--..++|.| .+.++++... ...|.+|+..+. +...........|..+.|++++.+||.--.|. |.+|-..
T Consensus 256 ~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 22234678999 5677877764 456778875542 22222223456789999999999999877665 9999876
Q ss_pred ccc--eehcccc-cccceEEEEEeeCC-CEEEEEeCCCcEEEeec
Q 021247 274 MRA--AMQSMTN-HTDQVWGVSFRPLG-GRVVSVSDDKSISLYEY 314 (315)
Q Consensus 274 ~~~--~~~~~~~-~~~~v~~~~~s~~~-~~l~s~~~d~~i~i~~~ 314 (315)
... ..+.+.. ....+..+.|+|.. ..|......|.+..++|
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 533 2222221 12334458999864 35666666688877765
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.2e-08 Score=89.61 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=165.1
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCC------------CCEEEEeeCC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPS------------GIIAASASLD 81 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~------------g~~l~s~~~d 81 (315)
...-.++.|+|.+ +|+=|| ...|.+-|..+.+....+.-|...|+++.|.|- ..+++++.-.
T Consensus 15 ~sN~~A~Dw~~~G-----LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-----LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred cccccccccCccc-----eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 3357788898865 455544 567888888888888888889999999998652 2367888889
Q ss_pred CeEEEEECCCCceeEEeeCCcccEEEEEECC---CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 82 SFVRVFDVDTNASIATLEASPSEVWQMQFDP---KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 82 ~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
|.|.+||......+..+..+.+++..++|-| +.+.++++-....++.+|+..+++...++....
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~------------- 155 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH------------- 155 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-------------
Confidence 9999999999988888888999999999865 334666777778899999999998887664321
Q ss_pred cceEEEEECC-CCCEEEEecCCCcEEEEEcc-------cceeeeeecCCcc-----------------c--------eEE
Q 021247 159 KFVLSVAWSP-DGRRIACGSMDGTISVFDVT-------RAKFLHHLEGHFM-----------------P--------VRS 205 (315)
Q Consensus 159 ~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~-------~~~~~~~~~~~~~-----------------~--------v~~ 205 (315)
....|+.+.| +.+.+..-+..|.+.+.+.. .++..+.-..|.. + ...
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 1245677777 66666666666777666542 1222222222211 0 113
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC--CCCeEEEEeCCCcEEEEecCc
Q 021247 206 LVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP--DGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 206 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d~~i~iwd~~~ 274 (315)
++|+|.-.+.+ -..-.+.+.++|++-...+....-..+.+.-+.+-| +...|.....||.+.+|-.+.
T Consensus 236 faf~p~~rn~l-fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 236 FAFSPHWRNIL-FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhcChhhhceE-EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 46677544333 334456689999987777666544444333445555 456899999999999997653
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=6.2e-08 Score=74.90 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=135.6
Q ss_pred CCCEEEEeeCCCeEEEEECCCCcee-EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 71 SGIIAASASLDSFVRVFDVDTNASI-ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 71 ~g~~l~s~~~d~~i~~w~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
...+|+.|+..|...+|...+.+.. ...+.+...|.-+.-..+...-+..++.|.++++.++...........
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~------ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN------ 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec------
Confidence 4458899999999999999876542 233333332221111111111123356777777777653211111100
Q ss_pred CCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-eeeee--ecCCccceEEEEEcCCCCcEEEEEeCCCeEE
Q 021247 150 KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-KFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDTHVH 226 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 226 (315)
+ .-...++.++++++++++.+....|..|.+... ..+.. ....+..-.+..|+. ....++++..||++.
T Consensus 157 ------~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 157 ------Q-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCA 228 (344)
T ss_pred ------c-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEE
Confidence 0 011678999999999999999999999988533 22222 122233345667876 567899999999999
Q ss_pred EEeCCCC-eeEE----EeecccccEEEEEEcCCCC--eEEEEeCCCcEEEEecCccceehccc-------ccc-cceEEE
Q 021247 227 MYDAEGK-SLVT----AMSGHASWVLSVDASPDGA--AITTGSSDRTVKLWDLNMRAAMQSMT-------NHT-DQVWGV 291 (315)
Q Consensus 227 ~wd~~~~-~~~~----~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~-~~v~~~ 291 (315)
|||.+.. .++. .-..|.+.+..+.|++.|. +|.-.-.=+.+.+-|++..+..+.+. .|. ..+...
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 9998753 2222 2245899999999998654 44444445678999998866544321 222 337777
Q ss_pred EEeeCCCEEEEEeC
Q 021247 292 SFRPLGGRVVSVSD 305 (315)
Q Consensus 292 ~~s~~~~~l~s~~~ 305 (315)
.|+.++..+....+
T Consensus 309 ~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 309 NFNNENESNDVKNE 322 (344)
T ss_pred cccCCCcccccccc
Confidence 77777666554444
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=3.2e-09 Score=86.11 Aligned_cols=149 Identities=23% Similarity=0.253 Sum_probs=101.7
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEccccee----eeeecCCccceEEEEEcCCCCcEE--EEEeCCCeEEEEeCCCCeeE
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSPVDPRVL--FSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l--~s~~~d~~i~~wd~~~~~~~ 236 (315)
....++.++++|++..+....+++...... +....... ..+++.|-..+...+ -.+++...+.+|....+ ..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeeccccc-Cc
Confidence 345567788888888777777777654332 22111111 112333333222222 23345555666665543 22
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc-cccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM-TNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..+.+|...+++++++||+++++++..|..||+-....-..++.+ -+|++-|..++.-++. .|+++|.|+++++|||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI 222 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence 345689999999999999999999999999999888765555554 4699999999998864 5899999999999997
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=5e-09 Score=85.03 Aligned_cols=116 Identities=15% Similarity=0.349 Sum_probs=82.8
Q ss_pred EEEECCCCCEEEEe---cCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-E
Q 021247 163 SVAWSPDGRRIACG---SMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-A 238 (315)
Q Consensus 163 ~~~~~~~~~~l~~~---s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~ 238 (315)
.+.+-.+......+ +....+.+|....++ ...+.+|-.-+.+++++| ++++++++..|.+|++=....-..+. .
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh
Confidence 34444444443333 334445555554433 334557888999999999 67899999999999986655433333 3
Q ss_pred eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc
Q 021247 239 MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM 281 (315)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 281 (315)
.-||...|..+++-++ +.|++||.|+++++||+.+++.++++
T Consensus 190 clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 4689999999998865 45899999999999999999887664
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=1.5e-06 Score=68.22 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=105.5
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC------CcccEEEEEECCCC-----CeEEEEecCCCeEEEE
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA------SPSEVWQMQFDPKG-----TTLAVAGGGSASVKLW 130 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~~~~~~~d~~i~~~ 130 (315)
.-+.++|+||+.+||.+...|+|+++|+........-.. -..+|-.+.|-+.. .+.++.-...|.++=|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 457899999999999999999999999986543321111 12345566554322 1122233445555555
Q ss_pred ecCC-----cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEE
Q 021247 131 DTAT-----WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRS 205 (315)
Q Consensus 131 d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 205 (315)
-+.. .+....+.+. ......|.++.++|..+.|++|+.... ..+. -+.....+++
T Consensus 125 ~vs~gt~q~y~e~hsfsf~----------~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLta 184 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFS----------SHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTA 184 (282)
T ss_pred EEEcccCCcceeeEEEEec----------ccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceE
Confidence 4321 1122222111 112335899999999888877653221 0000 0000111111
Q ss_pred EEEcCCCCcEE-EEEeCCCe------EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247 206 LVYSPVDPRVL-FSASDDTH------VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278 (315)
Q Consensus 206 ~~~~~~~~~~l-~s~~~d~~------i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 278 (315)
-..-...+.+. ++...|.. ..+|.+-+.............|..+.+||+|+.||+...+|.|.+|++.+-+..
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 11111112111 11111211 112222221111111234677999999999999999999999999999875544
Q ss_pred hcc
Q 021247 279 QSM 281 (315)
Q Consensus 279 ~~~ 281 (315)
...
T Consensus 265 ~~W 267 (282)
T PF15492_consen 265 RSW 267 (282)
T ss_pred ccc
Confidence 433
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-08 Score=80.42 Aligned_cols=247 Identities=15% Similarity=0.268 Sum_probs=153.1
Q ss_pred cccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCC-----cceeecccccc------------ceEEEEeCCCC--C
Q 021247 13 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDM-----QLERTNTGHCL------------GVVSVAAHPSG--I 73 (315)
Q Consensus 13 h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~-----~~~~~~~~h~~------------~v~~~~~~~~g--~ 73 (315)
..+.|++|.|-..+. ++++|...|.|.+|.-... +....+.+|.. .|..+.|..++ .
T Consensus 25 ead~ItaVefd~tg~----YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 25 EADKITAVEFDETGL----YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred ccceeeEEEeccccc----eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 346899999977654 7999999999999964432 22223445542 45666665433 3
Q ss_pred EEEEeeCCCeEEEEECCCCc-------------------ee------------------E-----Ee-eCCcccEEEEEE
Q 021247 74 IAASASLDSFVRVFDVDTNA-------------------SI------------------A-----TL-EASPSEVWQMQF 110 (315)
Q Consensus 74 ~l~s~~~d~~i~~w~~~~~~-------------------~~------------------~-----~~-~~~~~~v~~~~~ 110 (315)
.++..+.|++|++|.+.... .+ . .+ ..|+..+.++++
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 55567789999999875320 00 0 00 234556788888
Q ss_pred CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCCcEEEEEccc
Q 021247 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDGTISVFDVTR 189 (315)
Q Consensus 111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg~i~i~d~~~ 189 (315)
+.+...+ + ..+|-.|.+|++.--.....+. ..+|.....-...|++..|+|. .+.+.-.+..|.|++-|+++
T Consensus 181 NsD~et~-l-SaDdLrINLWnl~i~D~sFnIV-----DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 181 NSDKETL-L-SADDLRINLWNLEIIDGSFNIV-----DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred cCchhee-e-eccceeeeeccccccCCceEEE-----eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 8776644 3 3578899999876322111110 1111111111234788899996 45677788899999999985
Q ss_pred ceeee----------------eecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEEeecc----------
Q 021247 190 AKFLH----------------HLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK-SLVTAMSGH---------- 242 (315)
Q Consensus 190 ~~~~~----------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~---------- 242 (315)
..... .+..-...|..+.|++ +++++++- +-.++++||.+.. .++.++.-|
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 43210 0112234678899997 56666553 3468999998643 344443322
Q ss_pred --cccE---EEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 243 --ASWV---LSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 243 --~~~i---~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
+..| ..+.|+.+...+++|+..+..-++-.
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 2333 35778888889999998887777753
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=4.9e-06 Score=67.09 Aligned_cols=214 Identities=20% Similarity=0.273 Sum_probs=132.5
Q ss_pred EEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeC-CCCCEEEEeeCCCeEEEEECCCCceeEE
Q 021247 19 AVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH-PSGIIAASASLDSFVRVFDVDTNASIAT 97 (315)
Q Consensus 19 ~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~-~~g~~l~s~~~d~~i~~w~~~~~~~~~~ 97 (315)
++.|.+... .++++--..+.|..|++.+......... ....+.+. ++|.++++. .++ +.++|..+++....
T Consensus 4 gp~~d~~~g---~l~~~D~~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDG---RLYWVDIPGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVAD-SGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTT---EEEEEETTTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEE-TTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCC---EEEEEEcCCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEE-cCc-eEEEecCCCcEEEE
Confidence 466776432 3667766789999999887655332111 25666676 676666554 444 56669888755433
Q ss_pred eeC-----CcccEEEEEECCCCCeEEEEecCC--------CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247 98 LEA-----SPSEVWQMQFDPKGTTLAVAGGGS--------ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164 (315)
Q Consensus 98 ~~~-----~~~~v~~~~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (315)
... .....+.++++|+|+ +.++.... +.+..++.. ++...... .-...+.+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--------------~~~~pNGi 139 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--------------GLGFPNGI 139 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--------------EESSEEEE
T ss_pred eeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--------------Ccccccce
Confidence 332 335678999999998 44443322 446666665 23221111 11225799
Q ss_pred EECCCCCEEE-EecCCCcEEEEEcccce-------eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247 165 AWSPDGRRIA-CGSMDGTISVFDVTRAK-------FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 165 ~~~~~~~~l~-~~s~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
+|+|+++.|+ +-+..+.|..+++.... ....+.........+++.. ++++.++....+.|.+++.+ ++++
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEE
Confidence 9999998775 66788899999985221 1222222223467888887 67788888889999999998 6666
Q ss_pred EEeecccccEEEEEEc-CCCCeE
Q 021247 237 TAMSGHASWVLSVDAS-PDGAAI 258 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~-~~~~~l 258 (315)
..+.-....+++++|. ++...|
T Consensus 218 ~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 218 REIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EEEE-SSSSEEEEEEESTTSSEE
T ss_pred EEEcCCCCCEEEEEEECCCCCEE
Confidence 6665444578999994 554444
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=5e-07 Score=72.42 Aligned_cols=219 Identities=21% Similarity=0.193 Sum_probs=131.7
Q ss_pred CCcEEEEcCCCCcceeeccc-c-ccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCe
Q 021247 39 DETVKLWRPDDMQLERTNTG-H-CLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTT 116 (315)
Q Consensus 39 d~~v~~w~~~~~~~~~~~~~-h-~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (315)
+|+|..||..+++......- . ....... ..+++..+++++.++.+..||..+++.+....... ++...-. ..+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceee-ecccc
Confidence 67888899888777655432 1 1111211 22345566667899999999999999887766422 1111011 12333
Q ss_pred EEEEecCCCeEEEEecCCcceeeee-cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeee
Q 021247 117 LAVAGGGSASVKLWDTATWNLIATL-SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHH 195 (315)
Q Consensus 117 ~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~ 195 (315)
+++ +..++.+..+|..+++.+... ....+. .. ....+.....++.++++..++.+..+|+.+++.+-.
T Consensus 79 v~v-~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 79 VYV-GTSDGSLYALDAKTGKVLWSIYLTSSPP-AG---------VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEE-EETTSEEEEEETTTSCEEEEEEE-SSCT-CS---------TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ccc-ccceeeeEecccCCcceeeeeccccccc-cc---------cccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 443 346779999999999998874 322111 00 011111222377888888899999999999998766
Q ss_pred ecCCccc----------e-EEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeC
Q 021247 196 LEGHFMP----------V-RSLVYSPVDPRVLFSASDDTH-VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSS 263 (315)
Q Consensus 196 ~~~~~~~----------v-~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 263 (315)
....... + ..+.+. ++ .++.+..++. +.+ |.++++.+-... ...+..+ ..+.+..|+.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSS 220 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEET
T ss_pred eecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeC
Confidence 6543322 1 122222 34 5556666664 555 999887552222 2223221 3456777887889
Q ss_pred CCcEEEEecCcccee
Q 021247 264 DRTVKLWDLNMRAAM 278 (315)
Q Consensus 264 d~~i~iwd~~~~~~~ 278 (315)
++.|..||+++++..
T Consensus 221 ~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 221 DGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEE
Confidence 999999999998753
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=2.3e-09 Score=93.41 Aligned_cols=199 Identities=20% Similarity=0.326 Sum_probs=133.0
Q ss_pred ccEEEEEECCCCCeEEEEecCCCeEEEEecCC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC--CEEEEecCC
Q 021247 103 SEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG--RRIACGSMD 179 (315)
Q Consensus 103 ~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~s~d 179 (315)
..+..+..+|.|..++.+. . .-+.+.|+.. ++...-+ .....-.+-...|+|.. .+-++....
T Consensus 25 ~~~~a~si~p~grdi~lAs-r-~gl~i~dld~p~~ppr~l------------~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLAS-R-QGLYIIDLDDPFTPPRWL------------HHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred Ccccceeeccccchhhhhh-h-cCeEEEeccCCCCCceee------------eccCcchhcceecccCCCCceeEEecCc
Confidence 3466778889888775542 2 2345555542 1110000 00001124456777643 244444455
Q ss_pred CcEEEEEcc--cc-eeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCC
Q 021247 180 GTISVFDVT--RA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDG 255 (315)
Q Consensus 180 g~i~i~d~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~ 255 (315)
..-.+|++. .. .....+.+|...|+.+.|+|..+..+++++.|..++.||++... .+.....-......+.|+...
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 667788874 22 23344668999999999999999999999999999999998643 233322223335578888755
Q ss_pred CeEEEEeCCCcEEEEecCcc-ceehcccccccceEEEEEeeC-CCEEEEEeCCCcEEEeecC
Q 021247 256 AAITTGSSDRTVKLWDLNMR-AAMQSMTNHTDQVWGVSFRPL-GGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 256 ~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~ 315 (315)
..+.+.+..+.|++||++.+ .++..+.+|...|.++.|... -..+.+.+.|++|+.|+++
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 55555677778999999876 567788888888999988764 3468899999999999985
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=1.5e-09 Score=60.26 Aligned_cols=39 Identities=18% Similarity=0.425 Sum_probs=36.3
Q ss_pred cceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 275 RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
++++.++.+|.+.|++++|+|++.+|++++.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356778899999999999999999999999999999997
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=4.7e-06 Score=72.10 Aligned_cols=265 Identities=12% Similarity=0.108 Sum_probs=153.9
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEE-EEEE
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVW-QMQF 110 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~-~~~~ 110 (315)
.++.++.+|.+.-+|.++++......... .+.+-..- .+..++.+..++.+..+|.++++.+........... ...-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 57778889999999998888766543221 12111111 134555677789999999999988776653211100 0000
Q ss_pred CC--CCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEEEecCCCcEEEEE
Q 021247 111 DP--KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIACGSMDGTISVFD 186 (315)
Q Consensus 111 ~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~s~dg~i~i~d 186 (315)
+| .+..+ +.+..++.+..+|..+++.+.......+.+.... .....+.-+| .+..++.++.+|.+..+|
T Consensus 200 sP~v~~~~v-~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 200 APATAFGGA-IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEI------DRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred CCEEECCEE-EEEcCCCEEEEEEccCChhhheeccccCCCccch------hcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 11 11223 4466789999999998887766543222110000 0000111112 245677777889999999
Q ss_pred cccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-ccEEEEEEcCCCCeEEEEeCCC
Q 021247 187 VTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-SWVLSVDASPDGAAITTGSSDR 265 (315)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~ 265 (315)
+.+++.+-..... ....+.. .+..++.++.++.+..+|.++++.+=....-. ....+..+ .+..|+.++.||
T Consensus 273 ~~tG~~~W~~~~~--~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 273 LRSGQIVWKREYG--SVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred CCCCCEEEeecCC--CccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence 9988765332211 1111111 23466777889999999998876542211101 11111112 245678899999
Q ss_pred cEEEEecCccceehcccccccceEE-EEEeeCCCEEEEEeCCCcEEEeec
Q 021247 266 TVKLWDLNMRAAMQSMTNHTDQVWG-VSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 266 ~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+.+.|..+++.+.........+.+ -.+ .++.|+.++.||.+..++.
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999998876554333223332 122 2558999999999988865
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.93 E-value=1.2e-05 Score=64.98 Aligned_cols=226 Identities=23% Similarity=0.340 Sum_probs=138.9
Q ss_pred EEEeCCCC-CEEEEeeCCC-eEEEEECCCCceeEEeeCCcccEE--EEEECCCCCeEEEEe----cCCCeEEEEecC-Cc
Q 021247 65 SVAAHPSG-IIAASASLDS-FVRVFDVDTNASIATLEASPSEVW--QMQFDPKGTTLAVAG----GGSASVKLWDTA-TW 135 (315)
Q Consensus 65 ~~~~~~~g-~~l~s~~~d~-~i~~w~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~----~~d~~i~~~d~~-~~ 135 (315)
.++.+|.. ..++.+-.-| ...+||..+++....+...++.-. --.|+|+|+.++.+- ...|.|.|||.+ +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 45677744 4444454444 477899999988776654433221 346899999877652 345889999998 55
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec------------------CCCcEEEEEcccceeeeee-
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS------------------MDGTISVFDVTRAKFLHHL- 196 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s------------------~dg~i~i~d~~~~~~~~~~- 196 (315)
+.+..+... +.. ...+.+.|||+.|+++- ++..+.+.|..+++.+...
T Consensus 89 ~ri~E~~s~---GIG----------PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 89 RRIGEFPSH---GIG----------PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EEEeEecCC---CcC----------hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 555555321 111 22466788886665542 2334566677888877763
Q ss_pred ---cCCccceEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCeeEEE-----eecccccEEEEEEcCCCCeE-EE
Q 021247 197 ---EGHFMPVRSLVYSPVDPRVLFSASDDT-------HVHMYDAEGKSLVTA-----MSGHASWVLSVDASPDGAAI-TT 260 (315)
Q Consensus 197 ---~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l-~s 260 (315)
..|..+++-+++.+ ++..++..-..+ -+-+++....-.... ...-.++|-+|++++++..+ +|
T Consensus 156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 34778999999987 455555444333 133333322111111 11235788999999998766 66
Q ss_pred EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
+=..+.+.+||..+++.+....- ..+-.++-.+++ ++++.+...
T Consensus 235 sPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCcc
Confidence 66788899999999988876543 233455555554 556655544
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=3.8e-06 Score=67.35 Aligned_cols=210 Identities=18% Similarity=0.227 Sum_probs=130.2
Q ss_pred CCeEEEEECCCCceeEEeeCCc--ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 81 DSFVRVFDVDTNASIATLEASP--SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
+++|..||..+++.+......+ ........ +.+..++ ++..++.+..||..+++.+.....+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--------- 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISG--------- 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGS---------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccc---------
Confidence 6889999999999888775422 22221122 2344454 446899999999999999988876332110
Q ss_pred cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee-cCCc-----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHF-----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
. . ...+..+++++.++.++.+|..+++.+-.. .... .......+ .+..++.+..++.|..+|.++
T Consensus 71 ~-----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 71 A-----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp G-----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTT
T ss_pred e-----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCC
Confidence 0 1 123456666668889999999999877653 2221 11112222 245778888899999999999
Q ss_pred CeeEEEeeccccc----------EEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEE
Q 021247 233 KSLVTAMSGHASW----------VLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVS 302 (315)
Q Consensus 233 ~~~~~~~~~~~~~----------i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 302 (315)
++++-........ +..-....++ .+..++.++.+.-+|+.+++.+-... ...+.. ...+.+..|+.
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~ 217 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYV 217 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEE
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEE
Confidence 9887665443211 1122222244 66667777754334999887542222 222222 24567788888
Q ss_pred EeCCCcEEEeec
Q 021247 303 VSDDKSISLYEY 314 (315)
Q Consensus 303 ~~~d~~i~i~~~ 314 (315)
++.++.|..||.
T Consensus 218 ~~~~~~l~~~d~ 229 (238)
T PF13360_consen 218 TSSDGRLYALDL 229 (238)
T ss_dssp EETTTEEEEEET
T ss_pred EeCCCEEEEEEC
Confidence 889999999986
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.88 E-value=1.2e-08 Score=56.53 Aligned_cols=38 Identities=42% Similarity=0.746 Sum_probs=35.8
Q ss_pred eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
+++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56778899999999999999999999999999999997
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=5e-08 Score=75.06 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=94.4
Q ss_pred EEEEeeCCCcEEEEcCCCCc-ceeeccccccceEEEEeCCCCCEEEEeeC-----CCeEEEEECCCCceeEEeeCCcccE
Q 021247 32 LLLTGSLDETVKLWRPDDMQ-LERTNTGHCLGVVSVAAHPSGIIAASASL-----DSFVRVFDVDTNASIATLEASPSEV 105 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~~~~v 105 (315)
-++++..||.+.+.+.+... +-.....-..+-.+.+....+..+.++.. -+..+.|+++..+.+..-......|
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 48999999999999876511 11111211222223333344555554321 1234556655443332222333458
Q ss_pred EEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEecCCCcEEE
Q 021247 106 WQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISV 184 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i 184 (315)
.+++-+|..+.++++|++||.+.+||.++...... ....|+..+..+-|+| ++..|+++++||.+..
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S------------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS------------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccccchHH------------HHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 89999999999999999999999999986422111 1234667788999999 5789999999999999
Q ss_pred EEccc
Q 021247 185 FDVTR 189 (315)
Q Consensus 185 ~d~~~ 189 (315)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99754
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=81.41 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=107.4
Q ss_pred EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccC
Q 021247 76 ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS 155 (315)
Q Consensus 76 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (315)
++.+.+-.+-+-|++++-. +.+. ....|.+++|.-.++ +++.|..+|.|..+|+|..+. ....+....
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnq---------G~~~~a~rl 295 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQ---------GNGWCAQRL 295 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeeccc---------CCCcceEEE
Confidence 5566777788888877632 2222 566788888987766 557888999999999986421 111122222
Q ss_pred CCCcceEEEEECC-CCCEEEEecCCCcEEEEEccccee---eeeecCCccceEEEEE--cCCCCcEEEEEeCCCeEEEEe
Q 021247 156 SSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKF---LHHLEGHFMPVRSLVY--SPVDPRVLFSASDDTHVHMYD 229 (315)
Q Consensus 156 ~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~~wd 229 (315)
-|...|+++..-. ++.+|++.+.+|.|++||++--+. +....+|...-.-+-+ .+ ....++++++|...++|.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEe
Confidence 3444577776655 678999999999999999986666 7778888654433333 33 445788899999999999
Q ss_pred CCCCeeEEEee
Q 021247 230 AEGKSLVTAMS 240 (315)
Q Consensus 230 ~~~~~~~~~~~ 240 (315)
++.+.++..+.
T Consensus 375 l~~ghLl~tip 385 (425)
T KOG2695|consen 375 LDSGHLLCTIP 385 (425)
T ss_pred cccCceeeccC
Confidence 99998877654
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=2.4e-05 Score=63.24 Aligned_cols=223 Identities=17% Similarity=0.190 Sum_probs=134.7
Q ss_pred EEEEeecCCCCCcEEEEeeCCCc-EEEEcCCCCcceee--------ccccccceEEEEeCCCCCEEEEeeC-----CCeE
Q 021247 19 AVTWVPATETRPALLLTGSLDET-VKLWRPDDMQLERT--------NTGHCLGVVSVAAHPSGIIAASASL-----DSFV 84 (315)
Q Consensus 19 ~v~~~~~~~~~~~~l~sgs~d~~-v~~w~~~~~~~~~~--------~~~h~~~v~~~~~~~~g~~l~s~~~-----d~~i 84 (315)
+++..|... ..++.+-.-|+ ..+||+.+.+.... +.|| -.|+++|.+|.+.-. .|.|
T Consensus 9 ~~a~~p~~~---~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 9 GVAAHPTRP---EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ceeeCCCCC---eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEE
Confidence 445555332 24555555553 56778777665433 3444 358999999988644 4789
Q ss_pred EEEECC-CCceeEEeeCCcccEEEEEECCCCCeEEEEecC-----------------CCeEEEEecCCcceeeeecCCCC
Q 021247 85 RVFDVD-TNASIATLEASPSEVWQMQFDPKGTTLAVAGGG-----------------SASVKLWDTATWNLIATLSIPRP 146 (315)
Q Consensus 85 ~~w~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------d~~i~~~d~~~~~~~~~~~~~~~ 146 (315)
-|||.. +.+.+..+..+.-.--.+.+.|+++.++++-++ +-.+.+.|..+++++....++.
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~- 158 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP- 158 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-
Confidence 999998 445566665544333456688999777665432 1233444555555555443322
Q ss_pred CCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc-------EEEEEcccceeeeee-------cCCccceEEEEEcCCC
Q 021247 147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT-------ISVFDVTRAKFLHHL-------EGHFMPVRSLVYSPVD 212 (315)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~-------i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~ 212 (315)
..++..|+.+++.++|..++..-..|. +-+++.. +.+..+ ..-...+-+|++++.+
T Consensus 159 --------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 159 --------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred --------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCC
Confidence 123445899999999877766544332 4444432 222211 1223567899999855
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247 213 PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD 264 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 264 (315)
..+++|+=..+.+.+||..++.++....- ..+..++..+++ +++|.+..
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCc
Confidence 55667777889999999999988765432 224456666665 55655543
No 309
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.77 E-value=6.1e-06 Score=69.15 Aligned_cols=193 Identities=19% Similarity=0.248 Sum_probs=125.3
Q ss_pred CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCc-cC-CCCcceEEEEECC-CCCEEEEecCCCcEEEEEcc
Q 021247 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTD-KS-SSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~~l~~~s~dg~i~i~d~~ 188 (315)
.+|+.+++. ..|.|.+||-.+.++ .++.+..+-..++.+ +. ....+... |++ +|++++..|. |...+.+..
T Consensus 276 sDGkrIvFq--~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyled--fa~~~Gd~ia~VSR-GkaFi~~~~ 349 (668)
T COG4946 276 SDGKRIVFQ--NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLED--FAVVNGDYIALVSR-GKAFIMRPW 349 (668)
T ss_pred CCCcEEEEe--cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhh--hccCCCcEEEEEec-CcEEEECCC
Confidence 356666665 346799999876443 333332111101100 00 00011111 232 5777777654 567777654
Q ss_pred cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247 189 RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT-HVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267 (315)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 267 (315)
.+-.++ .+|...|+-..+.. ++.-++-|..|| .+-+||..+++. +.+...-+.|.++..+|+|+.++.+.....+
T Consensus 350 ~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 350 DGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred CCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence 443332 34556677777765 455788888888 899999988754 4455667789999999999999999888889
Q ss_pred EEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC----cEEEeec
Q 021247 268 KLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK----SISLYEY 314 (315)
Q Consensus 268 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----~i~i~~~ 314 (315)
.+.|+.++.....-....+-|+..+|||+++++|-+=-+| .|+|||.
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm 476 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM 476 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence 9999998865433334457899999999999998765554 6788775
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=1.4e-05 Score=69.20 Aligned_cols=265 Identities=10% Similarity=0.016 Sum_probs=147.6
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceE------EEEeCC--CCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVV------SVAAHP--SGIIAASASLDSFVRVFDVDTNASIATLEAS 101 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~------~~~~~~--~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 101 (315)
..++.++.+|.+.-+|.++++......-.. .... .+.-.| .+..++.++.++.++.+|.++++.+...+..
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 467888888999999988877655432111 0000 001111 3445666778999999999999887766543
Q ss_pred cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc
Q 021247 102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181 (315)
Q Consensus 102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~ 181 (315)
......-... +..+ +.+..++.+..+|..+++.+.......+.. .......++ . .+..++.++.+|.
T Consensus 150 ~~~~ssP~v~--~~~v-~v~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~~~~~sP~----v--~~~~v~~~~~~g~ 216 (394)
T PRK11138 150 GEALSRPVVS--DGLV-LVHTSNGMLQALNESDGAVKWTVNLDVPSL----TLRGESAPA----T--AFGGAIVGGDNGR 216 (394)
T ss_pred CceecCCEEE--CCEE-EEECCCCEEEEEEccCCCEeeeecCCCCcc----cccCCCCCE----E--ECCEEEEEcCCCE
Confidence 2211111111 2333 446678999999999999988775432110 000001111 1 1235666778889
Q ss_pred EEEEEcccceeeeeecCCcc----c---eEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC
Q 021247 182 ISVFDVTRAKFLHHLEGHFM----P---VRSLVYSPV-DPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP 253 (315)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~----~---v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 253 (315)
+..+|..+++.+-....... . ...+.-+|. .+..++.++.++.+..+|.++++.+=... ......+..
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~~-- 292 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE--YGSVNDFAV-- 292 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--CCCccCcEE--
Confidence 99999888775433221000 0 001111221 23356667788999999998876542221 111111222
Q ss_pred CCCeEEEEeCCCcEEEEecCccceehcccc-cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 254 DGAAITTGSSDRTVKLWDLNMRAAMQSMTN-HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 254 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+..++.++.+|.+..+|..+++.+=.... ......+... .+.+|+.++.||.+...|.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 345677788899999999988764321111 0111111122 2567888888888877664
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=3.4e-07 Score=82.05 Aligned_cols=178 Identities=13% Similarity=0.171 Sum_probs=127.9
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee
Q 021247 117 LAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 196 (315)
Q Consensus 117 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~ 196 (315)
.++.|+-...+..+|+++.+.........+ .+.-|+ .+++.+.+|...|.|.+-|+.+.+.+.++
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-------------~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~ 213 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-------------GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTF 213 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCC-------------ceEEEE--ecCcEEEeecccceEEeecCCcCceeeee
Confidence 344566666788889988776665544322 133344 35789999999999999999999999999
Q ss_pred cCCccceEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCeeEEEeecccccEEEEEEcCC-CCeEEEEeCCCc
Q 021247 197 EGHFMPVRSLVYSPVDPRVLFSASD---------DTHVHMYDAEGKSLVTAMSGHASWVLSVDASPD-GAAITTGSSDRT 266 (315)
Q Consensus 197 ~~~~~~v~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~ 266 (315)
..|.+.+.++.. .+++|+++|- |..|+|||++..+.+..+.-+.++ .=+.|.|. ...+++++..|.
T Consensus 214 ~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 214 DAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred eccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc
Confidence 999999988775 4678888873 667999999876655444333332 23556774 346788888899
Q ss_pred EEEEecCcc-c---eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 267 VKLWDLNMR-A---AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 267 i~iwd~~~~-~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
..+-|.... . ....+...+..+.+..+|++|..++.+..+|.|.+|-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 988883321 1 1222222334589999999999999999999999995
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.68 E-value=1.3e-06 Score=78.50 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=131.9
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCC
Q 021247 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKP 151 (315)
Q Consensus 72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 151 (315)
+..++-|+-...+-.+|+++.+..+........+.-++.+ +.++++|...|+|.+-|.++.+.++++.-
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~a-------- 215 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDA-------- 215 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeec--------
Confidence 3455666666677788998887776665555557777764 23567888899999999999888877743
Q ss_pred CccCCCCcceEEEEECCCCCEEEEecC---------CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247 152 TDKSSSKKFVLSVAWSPDGRRIACGSM---------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~~~~l~~~s~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
|...|. +|+-.|+.|++++. |.-|++||++..+.+.-+.-+-++ .-+.|+|.-...++.++..
T Consensus 216 -----Hs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 216 -----HSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred -----ccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecc
Confidence 333354 44556888888764 556899999988877665544444 5567888877889999999
Q ss_pred CeEEEEeCCC---Ce-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 223 THVHMYDAEG---KS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 223 ~~i~~wd~~~---~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
|...+-|..+ .. -+.........+..++++++++.++-|..+|.|.+|-
T Consensus 288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999988432 21 1222233345599999999999999999999999996
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.67 E-value=2.1e-05 Score=67.88 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcEEEEE----eCCCe----EEEEeCCCCeeEE---EeecccccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 204 RSLVYSPVDPRVLFSA----SDDTH----VHMYDAEGKSLVT---AMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~----~~d~~----i~~wd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
.++.|+..+++.+.+. +.+|. -.+|+....++.. ........+.+++++|+...|+.|+.||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5677776666666544 23443 2356655433221 12245678999999999999999999999999999
Q ss_pred CccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..+-.. .....-.++.++|||+|..++.+++.|.+++||.
T Consensus 289 ~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 289 TRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 765322 2233345778999999999999999999999996
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.67 E-value=1.9e-05 Score=69.79 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=108.5
Q ss_pred CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC----cEEEEE
Q 021247 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG----TISVFD 186 (315)
Q Consensus 111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg----~i~i~d 186 (315)
.|+|+.+....-..+.+.+.|..+.+....+..+.. ...+.++++|+++++.+.+. .+...+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn--------------pd~v~~spdGk~afvTsyNsE~G~tl~em~ 266 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGN--------------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMM 266 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCC--------------cccceECCCCCEEEEeccCcccCcceeeec
Confidence 445554444444456777888887777666654322 24578899999988775322 233333
Q ss_pred cccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----CeeEEEeecccccEEEEEEcCCCCeEEE-
Q 021247 187 VTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG-----KSLVTAMSGHASWVLSVDASPDGAAITT- 260 (315)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 260 (315)
.........+.... + ..+.+ ++++... .+++|.+.|.++ ...+..+. -......++++|||+++++
T Consensus 267 a~e~d~~vvfni~~--i--ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVa 338 (635)
T PRK02888 267 AAERDWVVVFNIAR--I--EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIAN 338 (635)
T ss_pred cccCceEEEEchHH--H--HHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEe
Confidence 22111111111000 0 01122 3434333 367899999887 34444433 3445778999999997755
Q ss_pred EeCCCcEEEEecCccce------------ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 261 GSSDRTVKLWDLNMRAA------------MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+..+.+|.|.|+.+.+. ..+..- .......+|.++|+...|.-.|..|-.|++
T Consensus 339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 45588999999987542 122211 223446899999998889999999999986
No 315
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=0.00019 Score=61.63 Aligned_cols=256 Identities=21% Similarity=0.293 Sum_probs=161.5
Q ss_pred EEEEcCCCCcceeeccccccceEEEEeCCCCCEE-EEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEE
Q 021247 42 VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIA-ASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVA 120 (315)
Q Consensus 42 v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 120 (315)
+.+++..+........-+. ....+...+++..+ ++-.....+...+................-..+..++.++.+++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 4555544443333222111 44566677777433 333333355555554222112122111334467788888888888
Q ss_pred ecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC---CCcEEEEEcccceeeeeec
Q 021247 121 GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM---DGTISVFDVTRAKFLHHLE 197 (315)
Q Consensus 121 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~---dg~i~i~d~~~~~~~~~~~ 197 (315)
...+..|.+.|..+.+......... ....++++++++.+.++.. ++.+.+.|..+++......
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~--------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL--------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc--------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 8778999999987766666554322 1357999999987765443 7899999999888877765
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-E---eecccccEEEEEEcCCCCeEEEEeCC---CcEEEE
Q 021247 198 GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-A---MSGHASWVLSVDASPDGAAITTGSSD---RTVKLW 270 (315)
Q Consensus 198 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iw 270 (315)
....+ ..+++.|.+...+++-..++.|.+.|.+...... . ...-......+.++|++..+...... +.+...
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 54445 8889999766677777789999999987765553 1 11112334578899999866555444 589899
Q ss_pred ecCccceehc-ccccccceEEEEEeeCCCEEEEE-eCCCcEEEee
Q 021247 271 DLNMRAAMQS-MTNHTDQVWGVSFRPLGGRVVSV-SDDKSISLYE 313 (315)
Q Consensus 271 d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~ 313 (315)
|...+..... ..........+..+|+|..+... +..+.+.+-|
T Consensus 237 d~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 237 DTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred eCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 9888766554 22211145678999999988655 4446666654
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.5e-08 Score=88.04 Aligned_cols=216 Identities=17% Similarity=0.220 Sum_probs=147.5
Q ss_pred eeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCC-eEEEEec
Q 021247 54 RTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSA-SVKLWDT 132 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~~~d~ 132 (315)
+.+..|....++++|+...+.|+.|+..|.|+++++.+|........|..++.-+.-+.+|...+.+++... -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 445668889999999999999999999999999999999998889999999999988888887766655554 5678887
Q ss_pred CC-cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec----CCccceEEEE
Q 021247 133 AT-WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE----GHFMPVRSLV 207 (315)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~ 207 (315)
.. +...+++. .-.++.|+.....-+.|+..-...+||+.++..+.++. +....-+...
T Consensus 1175 ~s~~~~~Hsf~-----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD-----------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred ccccCcccccc-----------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 53 11111111 12366777654444556666678999999987765532 2223336778
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247 208 YSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 208 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
|+|.+ .+++ .|| .+||.+..+.++.+...+..+. =.|+|+|.-++..+ .|||+++.+.++..+.-. +
T Consensus 1238 FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld-q 1304 (1516)
T KOG1832|consen 1238 FSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD-Q 1304 (1516)
T ss_pred cCCCc-ceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCcccc-c
Confidence 88854 3333 233 4799887766655544332222 24899998877665 489999988887764321 2
Q ss_pred eEEEEEeeCCCEE
Q 021247 288 VWGVSFRPLGGRV 300 (315)
Q Consensus 288 v~~~~~s~~~~~l 300 (315)
..|.|+..|..+
T Consensus 1305 -c~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1305 -CAVTFNSTGDVM 1316 (1516)
T ss_pred -eEEEeccCccch
Confidence 245666655543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.7e-05 Score=69.96 Aligned_cols=205 Identities=16% Similarity=0.233 Sum_probs=125.1
Q ss_pred EeCCCCCEEEEeeCCCeEEEEECCCCce-eEEeeCCccc-EEEEEECCCCCeEEEEecCC-C----eEEEEecCCcc---
Q 021247 67 AAHPSGIIAASASLDSFVRVFDVDTNAS-IATLEASPSE-VWQMQFDPKGTTLAVAGGGS-A----SVKLWDTATWN--- 136 (315)
Q Consensus 67 ~~~~~g~~l~s~~~d~~i~~w~~~~~~~-~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d-~----~i~~~d~~~~~--- 136 (315)
++++.+..++-|+.+|.|.+.+ .... +..+..++.. |..+ +.-++..++++-+.| + .+++||+...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4567888999999999876655 3332 3555555544 3333 333343344444333 3 69999987531
Q ss_pred -e--e---eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEE--cccceee--eeecCCccceEEE
Q 021247 137 -L--I---ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD--VTRAKFL--HHLEGHFMPVRSL 206 (315)
Q Consensus 137 -~--~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d--~~~~~~~--~~~~~~~~~v~~~ 206 (315)
+ + ..++...+ ....++.+++.+.+-+.+|+|-.+|.|..+. +...+.. .-......+|+.+
T Consensus 107 sP~c~~~~ri~~~~np---------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNP---------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred CcceeeeeeeeccCCC---------CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 1 1 01111111 1344578999999989999999999999984 3222211 1222346799999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccc-cc
Q 021247 207 VYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMT-NH 284 (315)
Q Consensus 207 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~ 284 (315)
++..++...++.+. -..|.+|.+.++. ....+..|....++..+++....++.++ ...+.+|+...+.+--++. +|
T Consensus 178 ~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 178 ALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred EEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCC
Confidence 99864444344443 3468999988666 3444677788888888887655344444 4569999987655444454 55
Q ss_pred c
Q 021247 285 T 285 (315)
Q Consensus 285 ~ 285 (315)
.
T Consensus 256 k 256 (933)
T KOG2114|consen 256 K 256 (933)
T ss_pred e
Confidence 4
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.6e-06 Score=68.97 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=68.8
Q ss_pred hhhccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCC-CEEEEeeCCCeEEEE
Q 021247 9 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSG-IIAASASLDSFVRVF 87 (315)
Q Consensus 9 ~~~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~~~d~~i~~w 87 (315)
++.+|..-|-.++|+|..+ .++..++.+.+|++.|.++.........+ .++.+++|.-+. +.+.+|-..|.|.++
T Consensus 188 ~lp~~g~~IrdlafSp~~~---GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNE---GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCcccc---ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 4568888999999999754 58999999999999999988777777666 789999998655 788899999999999
Q ss_pred ECCCCc
Q 021247 88 DVDTNA 93 (315)
Q Consensus 88 ~~~~~~ 93 (315)
|.+..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998653
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.61 E-value=2.7e-05 Score=72.47 Aligned_cols=209 Identities=16% Similarity=0.214 Sum_probs=126.5
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeee
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT 140 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 140 (315)
+.|.++.|..+...++.+..+|.|.+-|..+... .....-.+.|.+++|+|++..+++.. ..+++.+-+ .+..++..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT-~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALIT-GRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEe-CCcEEEEEe-ccccchhc
Confidence 5799999999998888899999999988776543 33334456799999999998766543 344544422 22222211
Q ss_pred ecCC---------------C-------CCC----CCCCcc------CCCCcceEEEEECCCCCEEEEec----CC-CcEE
Q 021247 141 LSIP---------------R-------PEG----LKPTDK------SSSKKFVLSVAWSPDGRRIACGS----MD-GTIS 183 (315)
Q Consensus 141 ~~~~---------------~-------~~~----~~~~~~------~~~~~~i~~~~~~~~~~~l~~~s----~d-g~i~ 183 (315)
..+. + ..+ ..+... ....+.-+.+.|--||+++++.. .+ ..|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 1110 0 000 000000 00112234699999999998842 23 6899
Q ss_pred EEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCC---eeEEEeecccccEEEEEEcCCCCe
Q 021247 184 VFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS---DDTHVHMYDAEGK---SLVTAMSGHASWVLSVDASPDGAA 257 (315)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~ 257 (315)
+||.+ +..-..-..-.+.-.+++|-| .+.++++-. .|+.|.+|...+- +...........+..++|+.++.+
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 99976 332211111222335788998 455666543 4667999986542 222222333344899999999998
Q ss_pred EEE---EeCCCcEEEEecCc
Q 021247 258 ITT---GSSDRTVKLWDLNM 274 (315)
Q Consensus 258 l~s---~~~d~~i~iwd~~~ 274 (315)
|++ ......|++|-+..
T Consensus 304 LAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeeecccccceEEEEEecC
Confidence 877 55556699998764
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=3e-05 Score=66.05 Aligned_cols=262 Identities=16% Similarity=0.187 Sum_probs=143.4
Q ss_pred CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEE-eeCC----------------
Q 021247 39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIAT-LEAS---------------- 101 (315)
Q Consensus 39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~-~~~~---------------- 101 (315)
.+.+.+||..+.+....... ...+....++|+|+.++-.. ++.|.+++..++...+. ..+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 45678889888665444333 56788899999999988775 67899999877754432 1110
Q ss_pred cccEEEEEECCCCCeEEEEecCCCeEEEEecCC---c-c---eeeeecCCCCCCCCC-----------------C---cc
Q 021247 102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT---W-N---LIATLSIPRPEGLKP-----------------T---DK 154 (315)
Q Consensus 102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---~-~---~~~~~~~~~~~~~~~-----------------~---~~ 154 (315)
-+.-..+-|+|+++++++..-++..|+.+.+.. . . .+..+..|.+....+ . ..
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 112346779999999988776666665554321 1 1 223333222211100 0 00
Q ss_pred CCCCcceEEEEECCCCCEEEEecCC-----CcEEEEEcccceeeeeecC----CccceEEEEEc-CCCCcEEEEEeCCCe
Q 021247 155 SSSKKFVLSVAWSPDGRRIACGSMD-----GTISVFDVTRAKFLHHLEG----HFMPVRSLVYS-PVDPRVLFSASDDTH 224 (315)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~l~~~s~d-----g~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~-~~~~~~l~s~~~d~~ 224 (315)
......+..+.|.++++.|+....+ ..+.++|..+++....... --.......|. +.+..++.....+|.
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1234557889999998855443322 2477778876544222211 11122244454 656667766667775
Q ss_pred --EEEEeCCCCeeEEEeecccccEEE-EEEcCCCCeE-EEEeCCC----cEEEEecCccceehcccccccceEEEEEeeC
Q 021247 225 --VHMYDAEGKSLVTAMSGHASWVLS-VDASPDGAAI-TTGSSDR----TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPL 296 (315)
Q Consensus 225 --i~~wd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l-~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (315)
|.+++..++... .+....-.|.. +.++++++.| .++..+. .+..-+++.+..++.++.....-..+.|||+
T Consensus 260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 555666666533 55544455644 5678876644 5665532 4555566622334444433322268999999
Q ss_pred CCEEEEE
Q 021247 297 GGRVVSV 303 (315)
Q Consensus 297 ~~~l~s~ 303 (315)
|++++-.
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988643
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=4.4e-05 Score=68.09 Aligned_cols=181 Identities=17% Similarity=0.184 Sum_probs=121.1
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL 141 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 141 (315)
.+.++.++ +..++-|.-+|.+++.+..... .+...|... +..|.++ ++|+.||.|.+-.+-+.+...++
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~-asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYV-ASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceE-EEecCCCcEEEeeccCCccceeE
Confidence 44444443 4578888899999999876553 222223222 4567765 78999999999988776666555
Q ss_pred cCCCCCCCCCCccCCCCcceEEEEECCC-----CCEEEEecCCCcEEEEEccccee--eeeecCCccceEEEEEcCCCCc
Q 021247 142 SIPRPEGLKPTDKSSSKKFVLSVAWSPD-----GRRIACGSMDGTISVFDVTRAKF--LHHLEGHFMPVRSLVYSPVDPR 214 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~s~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 214 (315)
.+.+ ++.+++++|+ .+.+++|+..| +.++.-.-... ...+....++|.++.|. +.
T Consensus 110 df~r--------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~ 171 (846)
T KOG2066|consen 110 DFKR--------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GN 171 (846)
T ss_pred ecCC--------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---Cc
Confidence 4433 3789999997 57899999988 87776432211 11344557899999996 45
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEeeccc------ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 215 VLFSASDDTHVHMYDAEGKSLVTAMSGHA------SWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 215 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
+++=+.++| +++||...++.+..+.... .....+.|.++.+ |+. |..-+|+|..++.
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK 234 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence 777777776 9999998876665443211 1234577877654 444 4555789988873
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.49 E-value=0.00068 Score=60.38 Aligned_cols=276 Identities=13% Similarity=0.131 Sum_probs=147.8
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeecccccc------ceEE--EEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL------GVVS--VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP 102 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~------~v~~--~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 102 (315)
..++.++.++.|.-.|..+++.......... .+.. +... ++..++.++.++.|+-+|.++++.+.......
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 3567888899999999888776554322111 1110 1111 22566677889999999999999887765433
Q ss_pred cc-----EE-EEEECCCCCeEEEEe--------cCCCeEEEEecCCcceeeeecCCCCCCCCCCcc-CC------CCcce
Q 021247 103 SE-----VW-QMQFDPKGTTLAVAG--------GGSASVKLWDTATWNLIATLSIPRPEGLKPTDK-SS------SKKFV 161 (315)
Q Consensus 103 ~~-----v~-~~~~~~~~~~~~~~~--------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~i 161 (315)
.. +. ...+. +..+++.. +.++.+..+|..+++.+..+....+........ .. ....+
T Consensus 141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 21 11 11111 12233322 236789999999999988876532211100000 00 00001
Q ss_pred -EEEEECCCCCEEEEecCCC------------------cEEEEEcccceeeeeec--CCcc----ceEEEEEc---CCCC
Q 021247 162 -LSVAWSPDGRRIACGSMDG------------------TISVFDVTRAKFLHHLE--GHFM----PVRSLVYS---PVDP 213 (315)
Q Consensus 162 -~~~~~~~~~~~l~~~s~dg------------------~i~i~d~~~~~~~~~~~--~~~~----~v~~~~~~---~~~~ 213 (315)
...++.+.+..++.++.++ .+.-+|+.+++..=... .|.. ......+. +.++
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g 298 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG 298 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence 1344555567777776655 79999999888754432 1110 00000111 1122
Q ss_pred ---cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE------------------eCCCcEEEEec
Q 021247 214 ---RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG------------------SSDRTVKLWDL 272 (315)
Q Consensus 214 ---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~------------------~~d~~i~iwd~ 272 (315)
..++.++.+|.+...|.++++.+=..... ...+..+| + .+..+ ..+|.+.-.|+
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 25778888999999999988765432210 01123333 2 22221 23567777777
Q ss_pred Cccceehccccc--c------cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 273 NMRAAMQSMTNH--T------DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 273 ~~~~~~~~~~~~--~------~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+++.+=+.... . .+...-.....+..|+.++.||.++-+|-
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 776543211111 0 11111111224568888889999887764
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=3.4e-05 Score=69.27 Aligned_cols=199 Identities=15% Similarity=0.212 Sum_probs=124.0
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccccc-eEEEEeCCCCCEEEEeeCCCe-----EEEEECCCC------cee---
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLG-VVSVAAHPSGIIAASASLDSF-----VRVFDVDTN------ASI--- 95 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~-v~~~~~~~~g~~l~s~~~d~~-----i~~w~~~~~------~~~--- 95 (315)
..++.|+.||.|.+.+. ..++.+.+..+... |..+.....-.+|++.+.|+. +++|+++.- .+.
T Consensus 36 ~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred ceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 36999999999999864 33343455555555 666666666678888877754 999998753 222
Q ss_pred EEee----CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 96 ATLE----ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 96 ~~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
..+. ..+.++..++.+.+-+ .++.|-.+|.|.++.-.- .+. .+.+..-....+.+|+++++..++.
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi---~RD------rgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI---LRD------RGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred eeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc---hhc------cccceeeeccCCCCceeeEEecCCc
Confidence 1111 1245677888887644 557788899998885321 110 0111111223456799999999887
Q ss_pred E-EEEecCCCcEEEEEccccee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee-ccc
Q 021247 172 R-IACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHA 243 (315)
Q Consensus 172 ~-l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~ 243 (315)
. +++.+ -..|.+|.+....+ ...+..|..+.+|..+++..++ ++.++ +..+.+|+..+...--.+. +|.
T Consensus 185 s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 185 SVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred eeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 6 33333 34789999873332 3446677788999999874433 44443 3469999987654433333 443
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.3e-07 Score=84.55 Aligned_cols=224 Identities=16% Similarity=0.199 Sum_probs=143.5
Q ss_pred cchhhhh--hccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee-C
Q 021247 4 AGLKSVE--NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS-L 80 (315)
Q Consensus 4 ~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~-~ 80 (315)
++|+++. +.|+..-+|++|+-..+ .|+.|+..|.|++++...+.......+|..+|+-+..+.+|.+.++.+ +
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCc----eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc
Confidence 3444443 57788999999997665 599999999999999999999999999999999999999997666443 3
Q ss_pred CC-eEEEEECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCC
Q 021247 81 DS-FVRVFDVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSK 158 (315)
Q Consensus 81 d~-~i~~w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (315)
.. -..+|+.... ....++ ..-.++.|+.... ..+.|.......+||+.++..+.++-.+.- ...
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---------~~~ 1230 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF----DEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTV---------TSS 1230 (1516)
T ss_pred cCchHHHhccccccCccccc----cccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcch---------hhh
Confidence 33 4678998652 223333 2344667776533 223344446788999998877655422111 111
Q ss_pred cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA 238 (315)
Q Consensus 159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 238 (315)
..-+...|+|+..+++ +|| .+||++..+.+..+..-+.. ..-.|+|.+.+.++- --|||+++..+++.
T Consensus 1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIIN------SEIWDMRTFKLLHS 1298 (1516)
T ss_pred hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEee------chhhhhHHHHHHhc
Confidence 1125778999888877 555 46999877655544322211 123578855444432 24899998776644
Q ss_pred eecccccEEEEEEcCCCCeEE
Q 021247 239 MSGHASWVLSVDASPDGAAIT 259 (315)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~l~ 259 (315)
...-. =..+.|+..|..+.
T Consensus 1299 VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1299 VPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred Ccccc--ceEEEeccCccchh
Confidence 32211 12456766665443
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=0.00042 Score=54.10 Aligned_cols=68 Identities=12% Similarity=-0.001 Sum_probs=46.9
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccccce-EEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEee
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGV-VSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLE 99 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v-~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~ 99 (315)
..++.|+..|.+++.+..++.....+..- +.| ......+++.++.+++.|++.+..|..+..++...+
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 35777888888888887776544333211 111 223456789999999999999999998877765543
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.9e-06 Score=70.49 Aligned_cols=189 Identities=15% Similarity=0.165 Sum_probs=126.7
Q ss_pred CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-CCcEEEEEcccceee
Q 021247 115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-DGTISVFDVTRAKFL 193 (315)
Q Consensus 115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-dg~i~i~d~~~~~~~ 193 (315)
..++.+++.||.++.|--..-.-+.- ......|...|.+++.+-++..+.+... |..++++|++.-..+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEf----------VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEF----------VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI 89 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceee----------hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh
Confidence 34667889999999996432111100 0111234455778888889988888777 999999999766554
Q ss_pred eeecCCccceEEEEE--cCCCC--cEEEEEeCCCeEEEEeCCCCe--eEEEeecccccEEEEEEcCCCCeEEEEeCCCcE
Q 021247 194 HHLEGHFMPVRSLVY--SPVDP--RVLFSASDDTHVHMYDAEGKS--LVTAMSGHASWVLSVDASPDGAAITTGSSDRTV 267 (315)
Q Consensus 194 ~~~~~~~~~v~~~~~--~~~~~--~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i 267 (315)
.-++...- ...+.| +|.+. .+.++.-.++.+.++|..... ....-.-|..+|..+.+++-+..+++....|.|
T Consensus 90 nmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 90 NMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMV 168 (558)
T ss_pred hhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccccee
Confidence 33332111 122223 33222 233444568999999987543 333445689999999999999999999999999
Q ss_pred EEEecCc------cce---------ehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 268 KLWDLNM------RAA---------MQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 268 ~iwd~~~------~~~---------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..|.... .+. +..+........++.|+|+|..+.+.+.|.+|++|.+
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 9998762 111 1112223346779999999999999999999999975
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=2.1e-05 Score=70.68 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=83.9
Q ss_pred cceEEE-EEeecCCCCCcEEEEeeC----CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 15 ESVWAV-TWVPATETRPALLLTGSL----DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 15 ~~v~~v-~~~~~~~~~~~~l~sgs~----d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
+.|..+ +|.|..+ +++.++. .|+|.||- ++++..+... ..-.+.+++|||....|+.|-.-|.+.+|..
T Consensus 15 davsti~SWHPseP----lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEP----LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccccccCCCCc----eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEec
Confidence 344444 4888765 6777764 58899984 3444322111 1123567999999999999999999999999
Q ss_pred CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecC
Q 021247 90 DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 133 (315)
.+.+.-.....|+.++..+.|+|+|+.+ +++..-|.+.+|...
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCCCCeE-EEcCCCceeEEEEee
Confidence 8877767778899999999999999855 678888999999765
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=0.0001 Score=65.33 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=113.7
Q ss_pred EEeCCCCCEEE-EeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec---CCCeEEEEecCCcceeeee
Q 021247 66 VAAHPSGIIAA-SASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG---GSASVKLWDTATWNLIATL 141 (315)
Q Consensus 66 ~~~~~~g~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~ 141 (315)
+-+.|+|..+. ..-..+.+.+.|..+.+...++.... ....++++|+++++++++. ...++...+.........+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 33456675443 23334567777877766655554433 3356688899988777652 1223333333222222222
Q ss_pred cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc-----ceeeeeecCCccceEEEEEcCCCCcEE
Q 021247 142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR-----AKFLHHLEGHFMPVRSLVYSPVDPRVL 216 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l 216 (315)
.... ...+.++|++... .++.|.+.|.++ ...+..+... .....+.++|++..++
T Consensus 277 ni~~-----------------iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkyly 336 (635)
T PRK02888 277 NIAR-----------------IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFI 336 (635)
T ss_pred chHH-----------------HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEE
Confidence 1110 0123356776655 357899999987 3444444333 3457889999766667
Q ss_pred EEEeCCCeEEEEeCCCCe------------eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 217 FSASDDTHVHMYDAEGKS------------LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 217 ~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
+++..+.++.++|.+..+ ++.+..- .......+|+++|....|---|..|-.|++..
T Consensus 337 VanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 337 ANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 777789999999987643 2333322 23345688999998888888899999999875
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=0.00063 Score=53.15 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=74.7
Q ss_pred CcEEEEeeCCCcEEEEcCCCCcceeecc-ccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247 30 PALLLTGSLDETVKLWRPDDMQLERTNT-GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM 108 (315)
Q Consensus 30 ~~~l~sgs~d~~v~~w~~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~ 108 (315)
..+++.||..+.++--|+..+++..+.. +-.-....+- -|.+++.|...|.+++.+.+++.....+..-..--...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 4589999999999999998887765421 1111111111 46778999999999999999997665554322211233
Q ss_pred EECCCCCeEEEEecCCCeEEEEecCCcceeeeec
Q 021247 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS 142 (315)
Q Consensus 109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 142 (315)
...+++. ++..|+.|+.....|.++...+.+..
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence 4556666 45678999999999999877766543
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.36 E-value=0.00025 Score=60.72 Aligned_cols=271 Identities=15% Similarity=0.146 Sum_probs=132.0
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCC----
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDT---- 91 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~---- 91 (315)
.|+.+.|.+..- -|+.|-..|.|.+|.....+.... ....+-....+.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~----Elav~~~~GeVv~~k~~~n~~~~~--~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETL----ELAVGLESGEVVLFKFGKNQNYGN--REQPPDLDYNFRRFS------LNNSPGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTT----EEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--T
T ss_pred eEEEEEecCCCc----eEEEEccCCcEEEEEcccCCCCCc--cCCCcccCccccccc------ccCCCcceEEehhhCCc
Confidence 588999998765 499999999999997654332210 000011111111100 0000111112211
Q ss_pred ----C-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEE
Q 021247 92 ----N-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAW 166 (315)
Q Consensus 92 ----~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (315)
+ .+...+....++|.+++.+.-| +++.|..+|.+.|.|+|....+..-.+... .........++++.|
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~-----~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES-----FLSKSSSSYVTSIEF 143 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-------T-SS----EEEEEE
T ss_pred ccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc-----ccccccccCeeEEEE
Confidence 1 1233445557889999987544 567788999999999998877776544330 001123345777777
Q ss_pred C-----CCC---CEEEEecCCCcEEEEEccc---ceee----eeecCCccceEEEE-EcCCC------------------
Q 021247 167 S-----PDG---RRIACGSMDGTISVFDVTR---AKFL----HHLEGHFMPVRSLV-YSPVD------------------ 212 (315)
Q Consensus 167 ~-----~~~---~~l~~~s~dg~i~i~d~~~---~~~~----~~~~~~~~~v~~~~-~~~~~------------------ 212 (315)
. .|+ -.+++|+..|.+.+|.+.. ++.. .....+..++..+. |....
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~ 223 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI 223 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence 5 233 3688999999999998742 2222 22223445555444 32110
Q ss_pred -CcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEE-----cCCCCeEEEEeCCCcEEEEecCccceehccccc--
Q 021247 213 -PRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDA-----SPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-- 284 (315)
Q Consensus 213 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 284 (315)
-..++....+..++++..-..+..............+.+ ...+..|+.-..+|.|+++.+..-+.+..+.-.
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 012344445667999988766555444332222333344 234567888899999999999876665544332
Q ss_pred --ccceEEEEEeeCCCEEEEEeC
Q 021247 285 --TDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 285 --~~~v~~~~~s~~~~~l~s~~~ 305 (315)
...+....++++|..++-.|.
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS
T ss_pred cccccccccEECCCCCEEEEeCc
Confidence 123445677888875554433
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=9.1e-05 Score=66.19 Aligned_cols=173 Identities=20% Similarity=0.205 Sum_probs=112.7
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEEC
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFD 111 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~ 111 (315)
.|+-|..+|.|++.+.+... +....|... ..+|.++++++.||++.+-.+-+.+....+. ...++.+++++
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~ 121 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALH 121 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEec
Confidence 68999999999999865332 333334332 6689999999999999999998887776665 34678899999
Q ss_pred CC----CCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEc
Q 021247 112 PK----GTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 187 (315)
Q Consensus 112 ~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~ 187 (315)
|+ ...-+++||..| +.++.-+-..-.... ......++|.++.|. |+++|=++.+ .|++||+
T Consensus 122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-----------~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~ 186 (846)
T KOG2066|consen 122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-----------VLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDT 186 (846)
T ss_pred cchhhhhhhheeecCcce-EEEehhhhhcCccce-----------eeecCccceEEEEec--CcEEEEecCC-CcEEEec
Confidence 97 223456777777 777654321111111 112334569999996 5676666544 5999999
Q ss_pred ccceeeeeecCCccceE------EEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247 188 TRAKFLHHLEGHFMPVR------SLVYSPVDPRVLFSASDDTHVHMYDAE 231 (315)
Q Consensus 188 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~l~s~~~d~~i~~wd~~ 231 (315)
.+.+.+..+......++ .+.|.+ ...|+-|- ..+|++..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence 98887776654333333 345554 23444443 3467777665
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=1.9e-07 Score=80.64 Aligned_cols=200 Identities=20% Similarity=0.225 Sum_probs=129.0
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcce--eeccccccceEEEEeCCC-CCEEEEe----eCCCeEEE
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLE--RTNTGHCLGVVSVAAHPS-GIIAASA----SLDSFVRV 86 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~--~~~~~h~~~v~~~~~~~~-g~~l~s~----~~d~~i~~ 86 (315)
+..+-|++|.-..+ ..+++.|..+|.|.+-........ ...++|..++++++|++- ...||+| -.|..+.+
T Consensus 56 tqy~kcva~~y~~d--~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGND--RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCc--hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 45778888775433 458999999999999876543322 335678889999999885 3555554 34567999
Q ss_pred EECCCCc--eeEE--eeC-CcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcce
Q 021247 87 FDVDTNA--SIAT--LEA-SPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFV 161 (315)
Q Consensus 87 w~~~~~~--~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (315)
||+.+.- +... +.. ......+++|..+ ..++.+|.....+.++|+|....... .-....+
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~--------------svnTk~v 198 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVS--------------SVNTKYV 198 (783)
T ss_pred eecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhh--------------hhhhhhc
Confidence 9998762 1111 111 2233446777744 44667787788999999984221100 0112235
Q ss_pred EEEEECC-CCCEEEEecCCCcEEEEEc-ccce-eeeeecCCc----cceEEEEEcCCCCcEEEEEeCC-CeEEEEeCC
Q 021247 162 LSVAWSP-DGRRIACGSMDGTISVFDV-TRAK-FLHHLEGHF----MPVRSLVYSPVDPRVLFSASDD-THVHMYDAE 231 (315)
Q Consensus 162 ~~~~~~~-~~~~l~~~s~dg~i~i~d~-~~~~-~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~ 231 (315)
..+.+.| .++++++.. ||.|-+||. +.-+ ++..+...+ ..+..++|.|....++++...| ++|++||+.
T Consensus 199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6777888 677777665 999999993 3221 122221111 2378999999877778777765 789999975
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.33 E-value=0.00086 Score=53.48 Aligned_cols=199 Identities=14% Similarity=0.211 Sum_probs=111.0
Q ss_pred eeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec
Q 021247 98 LEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS 177 (315)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s 177 (315)
+..-...+..++|+|+.+.+++.....+.|.-++. .++.+..+.+....+ .-.+++..++.++++.-
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D------------~EgI~y~g~~~~vl~~E 83 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGD------------YEGITYLGNGRYVLSEE 83 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SS------------EEEEEE-STTEEEEEET
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCC------------ceeEEEECCCEEEEEEc
Confidence 33445569999999998888888888999988887 478887776543211 55788877777777665
Q ss_pred CCCcEEEEEcccce------eeeeec-----CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeE--EEee-
Q 021247 178 MDGTISVFDVTRAK------FLHHLE-----GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG---KSLV--TAMS- 240 (315)
Q Consensus 178 ~dg~i~i~d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~--~~~~- 240 (315)
.++.+.++++.... ....+. .++..+-.++|.|.+.++++ +-...-..+|..+. ...+ ....
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccc
Confidence 68899999883211 111121 24556789999996555554 44443344554432 1111 1111
Q ss_pred -----cccccEEEEEEcCC-CCeEEEEeCCCcEEEEecCccceehccccc---------ccceEEEEEeeCCCEEEEEeC
Q 021247 241 -----GHASWVLSVDASPD-GAAITTGSSDRTVKLWDLNMRAAMQSMTNH---------TDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 241 -----~~~~~i~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~ 305 (315)
.....+.++.++|. +++++.......|..+|. .++.+..+.-. -.+.-+++|.++|+ |..+++
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE 240 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE 240 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC
Confidence 12344678889985 567777888888888884 45544433211 14678999999984 666667
Q ss_pred CCcEEEe
Q 021247 306 DKSISLY 312 (315)
Q Consensus 306 d~~i~i~ 312 (315)
-....+|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 6665554
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.00015 Score=67.69 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=120.7
Q ss_pred cccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc
Q 021247 102 PSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT 181 (315)
Q Consensus 102 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~ 181 (315)
.+.|.++.|..+.+.+++ +...|.|.+-|..+......-. -...|.+++|+||++.++..+..+.
T Consensus 68 d~~i~s~~fl~d~~~i~v-~~~~G~iilvd~et~~~eivg~--------------vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICV-ITALGDIILVDPETLELEIVGN--------------VDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred CcceEEEEEecccceEEE-EecCCcEEEEcccccceeeeee--------------ccCceEEEeecCCCcEEEEEeCCcE
Confidence 357888888888776654 4567788887776543221111 1233899999999999998888777
Q ss_pred EEEEEc----ccc-------------------eeeeeecCCcc---------------------ceEEEEEcCCCCcEEE
Q 021247 182 ISVFDV----TRA-------------------KFLHHLEGHFM---------------------PVRSLVYSPVDPRVLF 217 (315)
Q Consensus 182 i~i~d~----~~~-------------------~~~~~~~~~~~---------------------~v~~~~~~~~~~~~l~ 217 (315)
+.+.+- -.. +.-..+++..+ .=.++.|-- ++++++
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fA 211 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFA 211 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEE
Confidence 766532 111 11111221100 012477875 566766
Q ss_pred EEe----CC-CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEe---CCCcEEEEecC---ccceehccccccc
Q 021247 218 SAS----DD-THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGS---SDRTVKLWDLN---MRAAMQSMTNHTD 286 (315)
Q Consensus 218 s~~----~d-~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d~~i~iwd~~---~~~~~~~~~~~~~ 286 (315)
... .+ ++|++||.+ +.+-..-....+-=.+++|-|.|..+++-. .|+.|.+|.-+ .++.....+....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 532 23 899999987 322222222222234689999999888753 45679999754 2333333444445
Q ss_pred ceEEEEEeeCCCEEEE---EeCCCcEEEeecC
Q 021247 287 QVWGVSFRPLGGRVVS---VSDDKSISLYEYS 315 (315)
Q Consensus 287 ~v~~~~~s~~~~~l~s---~~~d~~i~i~~~~ 315 (315)
++..++|+.++..|+. ......|++|-++
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEec
Confidence 5899999999988876 4444459999753
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.00013 Score=63.23 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=58.7
Q ss_pred cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 021247 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 232 (315)
..+.+++++|+...|+.|..||+|.+||..++... .......+..++|+| ++.+++.|+..|.+.+||+.-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 34889999999999999999999999998665332 223345678999999 677999999999999999753
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00015 Score=62.69 Aligned_cols=169 Identities=25% Similarity=0.317 Sum_probs=98.0
Q ss_pred CceeEEeeCCcccEEEEEECCCCCeEEEEe---cCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 92 NASIATLEASPSEVWQMQFDPKGTTLAVAG---GGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
+.....+......+..-+|+|++..++... .....+.++|+.+++.....+.+.. -..-+|+|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~--------------~~~P~fsp 247 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN--------------NGAPAFSP 247 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc--------------cCCccCCC
Confidence 333444444445566678888887655432 2114588888887665444432211 22457899
Q ss_pred CCCEEEE-ecCCCc--EEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEEeeccc
Q 021247 169 DGRRIAC-GSMDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH--VHMYDAEGKSLVTAMSGHA 243 (315)
Q Consensus 169 ~~~~l~~-~s~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~ 243 (315)
||+.|+- ...||. |+++|+....... +......-..-.|+|++..+.++.+..|. |.+++.++.... .+....
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~ 325 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG 325 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC
Confidence 9998764 455664 7777887666332 43322222355788966666666666665 666676666542 222222
Q ss_pred ccEEEEEEcCCCCeEEEEeC-CCc--EEEEecCccc
Q 021247 244 SWVLSVDASPDGAAITTGSS-DRT--VKLWDLNMRA 276 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~ 276 (315)
..-..-.++|+|++++..+. +|. |.+.++..+.
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 22225678999998876664 344 5566665544
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.21 E-value=7e-07 Score=77.25 Aligned_cols=186 Identities=17% Similarity=0.321 Sum_probs=116.1
Q ss_pred CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECC-CCCEEEEec----CCCcEEEEEccc
Q 021247 115 TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGS----MDGTISVFDVTR 189 (315)
Q Consensus 115 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~s----~dg~i~i~d~~~ 189 (315)
..++..|..+|.|.+-..+....- .......+..+.++++|++ |.+.||+|- .|..+.|||+.+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdS-----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDS-----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred hhhhhhccccCceEEeecCCcccc-----------cceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 356677888888887766542211 0111122345578999998 567788874 356799999976
Q ss_pred c--eeee--eecC-CccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcC-CCCeEEEEeC
Q 021247 190 A--KFLH--HLEG-HFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASP-DGAAITTGSS 263 (315)
Q Consensus 190 ~--~~~~--~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~ 263 (315)
+ .+.. .+.+ ......++.|. .+.+++++|...+.++++|++...... ..-....+..+.++| .+.++++-.
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc-
Confidence 5 2211 1222 22344577777 467788899999999999987432111 011133456677888 677877665
Q ss_pred CCcEEEEec-Cc-cceehcccccc----cceEEEEEeeCC-CEEEEEeCC-CcEEEeec
Q 021247 264 DRTVKLWDL-NM-RAAMQSMTNHT----DQVWGVSFRPLG-GRVVSVSDD-KSISLYEY 314 (315)
Q Consensus 264 d~~i~iwd~-~~-~~~~~~~~~~~----~~v~~~~~s~~~-~~l~s~~~d-~~i~i~~~ 314 (315)
|+.|.+||. +. ..++..+.... +++..++|.|-. ..+++...| ++|+++++
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 999999993 32 23344433222 348899999963 345555554 88998875
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.20 E-value=8.4e-05 Score=68.15 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=95.1
Q ss_pred CCCEEEEe-cCCCcEEEEEcccceeeeeecCCccc-eEEEEE----cCCCCcEEEEEeCCCeEEEEeCCCC--eeEEE-e
Q 021247 169 DGRRIACG-SMDGTISVFDVTRAKFLHHLEGHFMP-VRSLVY----SPVDPRVLFSASDDTHVHMYDAEGK--SLVTA-M 239 (315)
Q Consensus 169 ~~~~l~~~-s~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~----~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~-~ 239 (315)
+.++|+.. .....++-.|+++|+.+..+..+... |..++= ....+...+.|-.+..+..||++-. +++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34444433 45678999999999999999877654 555431 1112345677888889999998743 23311 1
Q ss_pred e--cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247 240 S--GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS 308 (315)
Q Consensus 240 ~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 308 (315)
. .......+++-+.+| +||+|+.+|.||+||--..+....+++-.++|.+|..+.||++|++.+..--
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyL 641 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYL 641 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceE
Confidence 0 123456777777776 5899999999999994332223335666789999999999999988876443
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.18 E-value=0.002 Score=51.43 Aligned_cols=205 Identities=12% Similarity=0.149 Sum_probs=111.9
Q ss_pred eeccccccceEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCC-cccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247 54 RTNTGHCLGVVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEAS-PSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d 131 (315)
+.+++-...+..|.++|+.. +++.....+.|...+. +++.+..+... ......+++..++. ++++...++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEE
Confidence 34556556699999999754 6666677788888886 46666666443 35577888876654 445556688898888
Q ss_pred cCCcc-e-----eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccc---ceee--ee-----
Q 021247 132 TATWN-L-----IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR---AKFL--HH----- 195 (315)
Q Consensus 132 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~---~~~~--~~----- 195 (315)
+.... . ...+.+... ...+..+-.++|+|.++.|+.+-+..-..+|.+.. ...+ ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP--------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp E----TT--EEEEEEEE---S-----------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EeccccccchhhceEEecccc--------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 74321 1 112221111 11233478999999888777776665566665543 1111 11
Q ss_pred -ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEee--c-c------cccEEEEEEcCCCCeEEEEeCCC
Q 021247 196 -LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS--G-H------ASWVLSVDASPDGAAITTGSSDR 265 (315)
Q Consensus 196 -~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~-~------~~~i~~~~~~~~~~~l~s~~~d~ 265 (315)
.......+.++.++|..+++++.+.....|..+|.++ +.+..+. . . -...-.++++++|.+.++ +.-+
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN 242 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN 242 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence 1123345678999998888999999999999999554 4444332 1 1 124678999999875554 4444
Q ss_pred cEEEE
Q 021247 266 TVKLW 270 (315)
Q Consensus 266 ~i~iw 270 (315)
..++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0034 Score=54.03 Aligned_cols=218 Identities=23% Similarity=0.300 Sum_probs=147.8
Q ss_pred eEEEEeCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEec--CCCeEEEEecCCcceee
Q 021247 63 VVSVAAHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGG--GSASVKLWDTATWNLIA 139 (315)
Q Consensus 63 v~~~~~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~ 139 (315)
...+.+++.+. .++....+..|.+.|..+........... ....++++|+++.++++-. .++++.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 45667778776 55566667899999988777666655443 4557899999988888776 47899999998888776
Q ss_pred eecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe-cCCCcEEEEEcccceeee-e---ecCCccceEEEEEcCCCCc
Q 021247 140 TLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG-SMDGTISVFDVTRAKFLH-H---LEGHFMPVRSLVYSPVDPR 214 (315)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-s~dg~i~i~d~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~ 214 (315)
...... . -..+++.|+|+.++.. ..++.+.+.|........ . ...-......+.+.|++.+
T Consensus 155 ~~~vG~-------------~-P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~ 220 (381)
T COG3391 155 TIPVGN-------------T-PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNR 220 (381)
T ss_pred EEecCC-------------C-cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCE
Confidence 643211 1 1579999999966554 578899999977665543 1 0111223467788886655
Q ss_pred EEEEEeCC--CeEEEEeCCCCeeEEE--eecccccEEEEEEcCCCCeEEEEeC-CCcEEEEecCccceehcccccc---c
Q 021247 215 VLFSASDD--THVHMYDAEGKSLVTA--MSGHASWVLSVDASPDGAAITTGSS-DRTVKLWDLNMRAAMQSMTNHT---D 286 (315)
Q Consensus 215 ~l~s~~~d--~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~---~ 286 (315)
..++...+ +.+...|...+..... ..+.. ....+..+|+|..+.+... .+.+.+.|.............. .
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~ 299 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALG 299 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccc
Confidence 55555544 6899999988776654 22222 5667899999998877744 4889999988766555433222 2
Q ss_pred ceEEEEEeeC
Q 021247 287 QVWGVSFRPL 296 (315)
Q Consensus 287 ~v~~~~~s~~ 296 (315)
.+..+++.+.
T Consensus 300 ~~~~~~~~~~ 309 (381)
T COG3391 300 EPVSIAISPL 309 (381)
T ss_pred cceeccceee
Confidence 3455555554
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.14 E-value=0.00017 Score=62.67 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=78.1
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM 239 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 239 (315)
++..+.++|+|+.++++ .||...++.....+... .+.-..+.|.+ .+ .++.-...+.|.++.--..+....+
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEE
Confidence 46789999999998884 67788888743333222 12345677887 33 4556656888998743222221112
Q ss_pred ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 240 SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
... ..+..+-. |.+|...+.+ .|.+||..+++.+..+.. .+|..|.|+++|.+++-.+.+ ++.|+++
T Consensus 106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 111 11222221 7777776655 899999999998888764 248999999999999888755 6666654
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.11 E-value=0.004 Score=52.38 Aligned_cols=268 Identities=15% Similarity=0.128 Sum_probs=116.7
Q ss_pred CcEEEEeeCCCcEEEE--cCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEE
Q 021247 30 PALLLTGSLDETVKLW--RPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQ 107 (315)
Q Consensus 30 ~~~l~sgs~d~~v~~w--~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~ 107 (315)
+.+|+++..||.-.+| |+++.+..+.-.+..........+++...++=......++..|+.+.+....+.....-+-.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~ 127 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY 127 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc
Confidence 3578888888865555 66676665544432222223455677776654545568888899988766555555444433
Q ss_pred EEEC--CCCCeEEEEec--C-------------------CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEE
Q 021247 108 MQFD--PKGTTLAVAGG--G-------------------SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSV 164 (315)
Q Consensus 108 ~~~~--~~~~~~~~~~~--~-------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (315)
..|. .++..++-.-. . ...|.-.|+.+++.. .......++..+
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~--------------~v~~~~~wlgH~ 193 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK--------------VVFEDTDWLGHV 193 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE--------------EEEEESS-EEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee--------------EEEecCccccCc
Confidence 4442 33333211100 0 011112222222111 111234567788
Q ss_pred EECCCCC-EEEEecCCC----cEEEEEccc-ceeeeeecCC--ccceEEEEEcCCCCcEEEEE----eCCCeEEEEeCCC
Q 021247 165 AWSPDGR-RIACGSMDG----TISVFDVTR-AKFLHHLEGH--FMPVRSLVYSPVDPRVLFSA----SDDTHVHMYDAEG 232 (315)
Q Consensus 165 ~~~~~~~-~l~~~s~dg----~i~i~d~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~----~~d~~i~~wd~~~ 232 (315)
.|+|... .|+-|.+.. .-+||-+.+ +.....+..+ ...+.---|.|++..+..-+ +.+..|.-+|..+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 8999544 445554321 124554421 2222222222 23344456787655544433 2345677788877
Q ss_pred CeeEEEeecccccEEEEEEcCCCCeEEEEeCCC----------------cEEEEecCcccee---------hcccccccc
Q 021247 233 KSLVTAMSGHASWVLSVDASPDGAAITTGSSDR----------------TVKLWDLNMRAAM---------QSMTNHTDQ 287 (315)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~----------------~i~iwd~~~~~~~---------~~~~~~~~~ 287 (315)
+.....+. ..+...+-.+++|++++-=+.|. -|+++++..++.. ..+.++...
T Consensus 274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 64432222 23455677788998776555542 4566777654432 112222211
Q ss_pred -eEEEEEeeCCCEEE-EEeCCCcEEEee
Q 021247 288 -VWGVSFRPLGGRVV-SVSDDKSISLYE 313 (315)
Q Consensus 288 -v~~~~~s~~~~~l~-s~~~d~~i~i~~ 313 (315)
=-...|+|||++|+ +...+|...||-
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 13578999999986 455567777763
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.10 E-value=0.00047 Score=57.95 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=105.8
Q ss_pred eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC----CCEEEEecC---------C-CcEEEEEcccc-
Q 021247 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD----GRRIACGSM---------D-GTISVFDVTRA- 190 (315)
Q Consensus 126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~s~---------d-g~i~i~d~~~~- 190 (315)
.|++.|..+++.+..+.++..+. ...+..+.+..+ ..+|++|+. . |.|.++++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~---------~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~ 73 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEH---------VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP 73 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEE---------EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred EEEEEeCCCCeEEEEEECCCCce---------EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc
Confidence 57888888877777766543321 011223334332 457777652 2 88999999873
Q ss_pred ---eeeeee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEEeec-ccccEEEEEEcCCCCeEEEEeC
Q 021247 191 ---KFLHHL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS-LVTAMSG-HASWVLSVDASPDGAAITTGSS 263 (315)
Q Consensus 191 ---~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~ 263 (315)
..+..+ ....++|.++.-. +++++++. .+.|.+|++...+ ++..-.- ....+.++... +.+++.|..
T Consensus 74 ~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~ 147 (321)
T PF03178_consen 74 ENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA 147 (321)
T ss_dssp ----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES
T ss_pred ccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc
Confidence 122211 2346788888755 45533333 4789999987766 4433221 23356666554 558999999
Q ss_pred CCcEEEEecCc-cceehcccc--cccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 264 DRTVKLWDLNM-RAAMQSMTN--HTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 264 d~~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
-..+.++..+. ...+..+.. ....++++.|-+++..++.+..+|.+.++.+
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 88898885543 222322222 2346888888877778999999999999876
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0068 Score=54.10 Aligned_cols=239 Identities=15% Similarity=0.202 Sum_probs=131.3
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeecccccc--ceEEEEeCC---CCCEEEEee---------CCCeEEEEECCCCceeE
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAAHP---SGIIAASAS---------LDSFVRVFDVDTNASIA 96 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~--~v~~~~~~~---~g~~l~s~~---------~d~~i~~w~~~~~~~~~ 96 (315)
..++.++.|+.|.-+|.++++.......... .-..+.-+| ++. ++.++ .++.+..+|..+++.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCE-EEEeccccccccCCCCcEEEEEECCCCceee
Confidence 4688888999999999988887655432111 000111111 233 33332 46889999999998877
Q ss_pred EeeCCcc--------------------cEE-EEEECCCCCeEEEEecCCC------------------eEEEEecCCcce
Q 021247 97 TLEASPS--------------------EVW-QMQFDPKGTTLAVAGGGSA------------------SVKLWDTATWNL 137 (315)
Q Consensus 97 ~~~~~~~--------------------~v~-~~~~~~~~~~~~~~~~~d~------------------~i~~~d~~~~~~ 137 (315)
.++.... .++ ...+++.+..+++ +..++ .+.-.|..+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 6644211 111 2334444454444 44443 789999999999
Q ss_pred eeeecCCCCCCCCCCccCCCCc-ceEEEEECCCCC---EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC
Q 021247 138 IATLSIPRPEGLKPTDKSSSKK-FVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP 213 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 213 (315)
+..+......... ...... .+..+. .-++. .+++++.+|.+...|.++++.+-..... ...+...| +
T Consensus 269 ~W~~~~~~~~~~~---~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWD---YDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcc---cccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--c
Confidence 8877543221000 000000 011111 11233 5778889999999999999876543211 01122222 2
Q ss_pred cEEEE-----------------EeCCCeEEEEeCCCCeeEEEeecc--c------ccE--EEEEEcCCCCeEEEEeCCCc
Q 021247 214 RVLFS-----------------ASDDTHVHMYDAEGKSLVTAMSGH--A------SWV--LSVDASPDGAAITTGSSDRT 266 (315)
Q Consensus 214 ~~l~s-----------------~~~d~~i~~wd~~~~~~~~~~~~~--~------~~i--~~~~~~~~~~~l~s~~~d~~ 266 (315)
.+++. ...++.+.-.|.++++.+=..... . ... ..+.. .+..|+.++.||.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~ 417 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY 417 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence 22221 123567888888777654222211 0 111 11122 4567888899999
Q ss_pred EEEEecCccceehccc
Q 021247 267 VKLWDLNMRAAMQSMT 282 (315)
Q Consensus 267 i~iwd~~~~~~~~~~~ 282 (315)
++.+|.++++.+-+.+
T Consensus 418 l~ald~~tG~~lW~~~ 433 (488)
T cd00216 418 FRAFDATTGKELWKFR 433 (488)
T ss_pred EEEEECCCCceeeEEE
Confidence 9999999998765543
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.0059 Score=53.26 Aligned_cols=220 Identities=13% Similarity=0.172 Sum_probs=108.9
Q ss_pred cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247 59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI 138 (315)
Q Consensus 59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 138 (315)
....+..++.+|+|+.++.+ .||...++.......... +.-....|.+.+. ++ .-....+|.++.--..+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yA-v~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YA-VLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EE-EE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EE-EEECCCeEEEEEcCccccc
Confidence 33457899999999988874 477777777444433222 2234567777544 43 3344778888632222211
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEE
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFS 218 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 218 (315)
..+..+. .+..+-. |..|+..+.+ .|.+||..+++.+..+... +|..+.|+++ +.+++-
T Consensus 103 k~i~~~~--------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~-g~~val 161 (443)
T PF04053_consen 103 KSIKLPF--------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD-GELVAL 161 (443)
T ss_dssp -----SS---------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT-SSEEEE
T ss_pred eEEcCCc--------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC-CCEEEE
Confidence 1221110 1222322 7777776554 8999999999999888743 4899999984 555555
Q ss_pred EeCCCeEEEEeCCCC-----------eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccc
Q 021247 219 ASDDTHVHMYDAEGK-----------SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 219 ~~~d~~i~~wd~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
.+.+ .+.+++.+.. ........-...|.+..|..+ .++-.... .++.+---....+..+ ..+
T Consensus 162 ~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~l---d~~ 234 (443)
T PF04053_consen 162 VTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHL---DKP 234 (443)
T ss_dssp E-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE----SS-
T ss_pred EeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEc---CCc
Confidence 5544 4555442211 012222222455777788766 33333333 6766321111223333 346
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 288 VWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 288 v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+.=+.+.|+.+.|.....|+.|..+.+
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 777888887789999999999888765
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.04 E-value=0.00074 Score=45.91 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=69.1
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCcee
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASI 95 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~ 95 (315)
.|+++++++.......-|+.||.|..|++|+-+ ++..+.. ....|.++..... ..++-+-.+|+|-+++-. ..+
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence 488999998776666789999999999999754 3444443 3456777776665 567778889998888753 333
Q ss_pred EEeeCCcccEEEEEEC--CCCCeEEEEecCCCeEE
Q 021247 96 ATLEASPSEVWQMQFD--PKGTTLAVAGGGSASVK 128 (315)
Q Consensus 96 ~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~ 128 (315)
..++....++.-..++ -+|..-+++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4444333333222333 33444556676676653
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.002 Score=55.88 Aligned_cols=184 Identities=22% Similarity=0.266 Sum_probs=101.0
Q ss_pred cceEEEEeCCCCCEEEEe---eCC-CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCe--EEEEecCC
Q 021247 61 LGVVSVAAHPSGIIAASA---SLD-SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSAS--VKLWDTAT 134 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~---~~d-~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~~~d~~~ 134 (315)
..+..-.|+|++..++-. ... ..+.++++++++...... ....-..-+|+|+|+.++++...|+. |.++|+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 345566788888765422 222 468999999887654443 23334456799999999998887775 66667776
Q ss_pred cceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec-CCCc--EEEEEcccceeeeeecCCccceEEEEEcCC
Q 021247 135 WNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS-MDGT--ISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 211 (315)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s-~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 211 (315)
.+... ++ ...+ .-..=.|+|+|++++-.+ ..|. |.++|++.... ..+......-..-.|+|+
T Consensus 272 ~~~~~-Lt--~~~g-----------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 272 KNLPR-LT--NGFG-----------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred Cccee-cc--cCCc-----------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCC
Confidence 55222 21 1110 112346899999886554 4444 77777765544 222211111125568885
Q ss_pred CCcEEEEEeCCCe--EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE
Q 021247 212 DPRVLFSASDDTH--VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG 261 (315)
Q Consensus 212 ~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 261 (315)
+..+++....+|. |.+.|+.++.-...+. +......-.+.|+++.+...
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 5544444433444 5566665443222222 12222234556666655433
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0043 Score=53.31 Aligned_cols=235 Identities=19% Similarity=0.172 Sum_probs=117.9
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC---ccee
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT---WNLI 138 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---~~~~ 138 (315)
.|..+++.++...++.+-..|.|-||....++.... ....+-....+.+- ...+..-.+-|+.. ..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN--REQPPDLDYNFRRF-------SLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc--cCCCcccCcccccc-------cccCCCcceEEehhhCCcccc
Confidence 578899999988999999999999988765433220 00001111111110 01111122223321 0000
Q ss_pred eeecCCCCCCCCCC-ccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeee--cC------CccceEEEEEc
Q 021247 139 ATLSIPRPEGLKPT-DKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL--EG------HFMPVRSLVYS 209 (315)
Q Consensus 139 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~--~~------~~~~v~~~~~~ 209 (315)
+++.|. .....+..|++++.+ +=.+++.|+++|.+.+.|+|....+..- .. ....++++.|.
T Consensus 74 --------~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 74 --------EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp --------EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred --------cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 000000 011124568999987 4558999999999999999888776542 22 23356777775
Q ss_pred C----CCC---cEEEEEeCCCeEEEEeCCC---Cee----EEEeecccccEEEEE-EcCC-C------------------
Q 021247 210 P----VDP---RVLFSASDDTHVHMYDAEG---KSL----VTAMSGHASWVLSVD-ASPD-G------------------ 255 (315)
Q Consensus 210 ~----~~~---~~l~s~~~d~~i~~wd~~~---~~~----~~~~~~~~~~i~~~~-~~~~-~------------------ 255 (315)
. .++ -+++.|...|.+.+|.+.. +.. ......+.+.|..+. ++.+ |
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2 122 3688999999999997541 211 111224556665554 3221 1
Q ss_pred -CeEEEEeCCCcEEEEecCccceehcccccccceEEEEE-----eeCCCEEEEEeCCCcEEEeec
Q 021247 256 -AAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSF-----RPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 256 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.-++....+..||++...+.+..+......-...++.+ ...+..|++...+|.|++|.+
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 12444556778999998876554433222223344445 335678999999999999986
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0006 Score=60.33 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=97.3
Q ss_pred cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcce
Q 021247 59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNL 137 (315)
Q Consensus 59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 137 (315)
+..-+.--+++..+.+++-|+.-|.+++++-..+.... ........+.....++.. +++++|+..|.|.++-+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC
Confidence 33445555677788999999999999999987765432 333344556666777764 4667788889999887654211
Q ss_pred eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce----eeeeecCCccceEEEEEcCCCC
Q 021247 138 IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK----FLHHLEGHFMPVRSLVYSPVDP 213 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~ 213 (315)
. ...........|+..|++++|++++..+++|...|.|.+-.+.... ..+.+.....+|..+... +.
T Consensus 111 ~-------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~ 181 (726)
T KOG3621|consen 111 R-------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QS 181 (726)
T ss_pred C-------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cc
Confidence 1 1000111123367889999999999999999999999988876521 112222334566666654 34
Q ss_pred cEEEEE
Q 021247 214 RVLFSA 219 (315)
Q Consensus 214 ~~l~s~ 219 (315)
.+|++.
T Consensus 182 ~LLVSt 187 (726)
T KOG3621|consen 182 YLLVST 187 (726)
T ss_pred eehHhh
Confidence 444443
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.82 E-value=0.013 Score=48.50 Aligned_cols=254 Identities=17% Similarity=0.176 Sum_probs=141.6
Q ss_pred CcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee----------CCCeEEEEECCCCceeEEeeCCcc------
Q 021247 40 ETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS----------LDSFVRVFDVDTNASIATLEASPS------ 103 (315)
Q Consensus 40 ~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~----------~d~~i~~w~~~~~~~~~~~~~~~~------ 103 (315)
+.+.++|.++.+++-.++.- -.-.+..+|+|+.+.+++ ..-.|.+||..+......+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47889998888876665432 222355789998877642 233589999999877665543332
Q ss_pred -cEEEEEECCCCCeEEEEec-CCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCC-CCEEEEecCCC
Q 021247 104 -EVWQMQFDPKGTTLAVAGG-GSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPD-GRRIACGSMDG 180 (315)
Q Consensus 104 -~v~~~~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~s~dg 180 (315)
.....+++++++.+++.-- =...|.|.|+...+.+..+..|.. .-..|. .+.|.+-+.||
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-----------------~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-----------------WLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-----------------EEEEEEETTEEEEEETTS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-----------------EEEEecCCCceEEEecCC
Confidence 1223456777776655432 234678888888887777655432 112232 24566777889
Q ss_pred cEEEEEcc-cceeeeee----cCCccceE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEEeec------cccc-
Q 021247 181 TISVFDVT-RAKFLHHL----EGHFMPVR-SLVYSPVDPRVLFSASDDTHVHMYDAEGKSL--VTAMSG------HASW- 245 (315)
Q Consensus 181 ~i~i~d~~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~------~~~~- 245 (315)
++....+. .++..... .....++. .-.+.. .+..++--+-+|.|+--|+..... .....- ..+|
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence 88888875 44443221 11111111 112222 222344456677777777665432 111110 0111
Q ss_pred ---EEEEEEcCCCCeEEE---EeCC-----C--cEEEEecCccceehcccccccceEEEEEeeCCC-EEEEEe-CCCcEE
Q 021247 246 ---VLSVDASPDGAAITT---GSSD-----R--TVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGG-RVVSVS-DDKSIS 310 (315)
Q Consensus 246 ---i~~~~~~~~~~~l~s---~~~d-----~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~ 310 (315)
-.-+++++....|.+ .+.+ + .|-++|+.+++.+..+.. ..++.++..+.+.+ +|++.+ .++.+.
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEE
Confidence 123566654433322 1122 2 466778888888888764 24677899998765 666654 578999
Q ss_pred Eeec
Q 021247 311 LYEY 314 (315)
Q Consensus 311 i~~~ 314 (315)
+||.
T Consensus 316 v~D~ 319 (342)
T PF06433_consen 316 VYDA 319 (342)
T ss_dssp EEET
T ss_pred EEeC
Confidence 9984
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.81 E-value=4.3e-05 Score=41.11 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=31.9
Q ss_pred eehcccccccceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 277 AMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
....+..|...++++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3444557788999999999999999999999999996
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.81 E-value=9.8e-05 Score=39.59 Aligned_cols=37 Identities=46% Similarity=0.767 Sum_probs=32.2
Q ss_pred eEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 235 LVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
....+..|...|.++.+++.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455567888999999999999999999999999996
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00028 Score=62.31 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=78.5
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc------cccc
Q 021247 212 DPRVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS------MTNH 284 (315)
Q Consensus 212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~~~ 284 (315)
...+++.|+.-|.+++|+...+.....-. +..+.+..+.++++..++|.|+..|.|.++.++.+.+-.. -..|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 56789999999999999976654433322 2334455677899999999999999999999876432111 1236
Q ss_pred ccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 285 TDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 285 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
...|+++.|++|+..|++|...|+|.+-.+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEe
Confidence 788999999999999999999999977554
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.019 Score=47.59 Aligned_cols=224 Identities=16% Similarity=0.137 Sum_probs=127.5
Q ss_pred eCCCCC-EEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247 68 AHPSGI-IAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP 146 (315)
Q Consensus 68 ~~~~g~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 146 (315)
|.++.. ++.+--..+.|+-|+..++... .+............+..+. ++ ++ +..+.+++..++..+..+.....
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~-Lv-~~--~~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGR-LI-AC--EHGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCe-EE-EE--ccccEEEeccCCceeEEeccccC
Confidence 444444 5556666778888888765432 2222222223333444433 33 32 23455566554444222211111
Q ss_pred CCCCCCccCCCCcceEEEEECCCCCEEEEecC-----------CCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcE
Q 021247 147 EGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----------DGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRV 215 (315)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 215 (315)
+ ......+.+...|+|.+-+.... -|.++.+|. .+.....+..+-...+.++|+|++..+
T Consensus 107 -~-------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 107 -G-------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred -C-------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEE
Confidence 1 11123456777888876554322 133555554 355555555555666899999977667
Q ss_pred EEEEeCCCeEEEEeCCC--C----e-eEEEeecccccEEEEEEcCCCCeEEEEeCCC-cEEEEecCccceehcccccccc
Q 021247 216 LFSASDDTHVHMYDAEG--K----S-LVTAMSGHASWVLSVDASPDGAAITTGSSDR-TVKLWDLNMRAAMQSMTNHTDQ 287 (315)
Q Consensus 216 l~s~~~d~~i~~wd~~~--~----~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~ 287 (315)
+++=+..+.|+.|+... + . .........+..-.++.+.+|.+.+++..+| .|.+|+.+ ++++..+.-....
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~ 256 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR 256 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCC
Confidence 77777778999887652 1 1 1112222345556677888888775555554 89999998 8888777766567
Q ss_pred eEEEEEe-eCCCEEEEEeCC
Q 021247 288 VWGVSFR-PLGGRVVSVSDD 306 (315)
Q Consensus 288 v~~~~~s-~~~~~l~s~~~d 306 (315)
+++++|- |+.+.|+..+..
T Consensus 257 ~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 257 PTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CccceEeCCCcCEEEEEecC
Confidence 7888876 445666544443
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0009 Score=57.46 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=95.4
Q ss_pred CCCCCEE-EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC------CcEEEEEeCCCeEEEEeCCCCe--eEE
Q 021247 167 SPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD------PRVLFSASDDTHVHMYDAEGKS--LVT 237 (315)
Q Consensus 167 ~~~~~~l-~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~~wd~~~~~--~~~ 237 (315)
..+.+++ ..+..-..++-.|++.|+.+..+.-+.. |.-+.+.|+. +..-+.|-+|..|.-||++-.. .+.
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 3445544 4566667899999999999999887765 5666666642 1223456678889999987322 222
Q ss_pred Eeecc----cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247 238 AMSGH----ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS 308 (315)
Q Consensus 238 ~~~~~----~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 308 (315)
..++| .....|.+-..+| ++++|+.+|.||+||--.......+++-.++|..|..+.+|++|++.+..-.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence 22222 1224455555555 6899999999999997433333446778899999999999999988776443
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.68 E-value=0.0025 Score=58.88 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=92.7
Q ss_pred eEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC----C-CCCEEEEecCCCcEEEEEcccc
Q 021247 116 TLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS----P-DGRRIACGSMDGTISVFDVTRA 190 (315)
Q Consensus 116 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~-~~~~l~~~s~dg~i~i~d~~~~ 190 (315)
.++........|+-.|+..++.+..+....... |..++=. + .....+.|-.++.+..||+|-.
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~------------v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP------------VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCcc------------eeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence 344443456789999999999998886643211 2222211 0 1335566778889999999743
Q ss_pred --eeeee---ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCC
Q 021247 191 --KFLHH---LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDR 265 (315)
Q Consensus 191 --~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~ 265 (315)
+.+.. .........+++-. +..+++.|+.+|.|++||.-+......+.+-..+|.+|+.+.||+++++.+ +.
T Consensus 563 ~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~t 639 (794)
T PF08553_consen 563 GNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KT 639 (794)
T ss_pred CCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cc
Confidence 22211 11223345566544 456899999999999999654444444556678999999999999987655 45
Q ss_pred cEEEEec
Q 021247 266 TVKLWDL 272 (315)
Q Consensus 266 ~i~iwd~ 272 (315)
.+.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 6777764
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.67 E-value=0.026 Score=47.51 Aligned_cols=212 Identities=17% Similarity=0.247 Sum_probs=115.2
Q ss_pred eEEEEECCCCceeEEeeCCcc-cEE---EEEECCCC---CeEEEEecC----------CCeEEEEecCCc----ceeeee
Q 021247 83 FVRVFDVDTNASIATLEASPS-EVW---QMQFDPKG---TTLAVAGGG----------SASVKLWDTATW----NLIATL 141 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~-~v~---~~~~~~~~---~~~~~~~~~----------d~~i~~~d~~~~----~~~~~~ 141 (315)
.|++.|..+.+.+..+...+. .+. .+.+..+. ..+++.|.. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888877776665544332 233 33344321 333343321 288999998773 111111
Q ss_pred cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce-eeeeecC-CccceEEEEEcCCCCcEEEEE
Q 021247 142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK-FLHHLEG-HFMPVRSLVYSPVDPRVLFSA 219 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~s~ 219 (315)
. ....+..|.+++-. +++ |+++. ++.|.+|++...+ ....... ....+.++... +.+++.|
T Consensus 83 ~-----------~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 83 H-----------STEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp E-----------EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEE
T ss_pred E-----------EEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEE
Confidence 0 01123347777665 344 44443 4789999997766 4332221 22356666654 3478888
Q ss_pred eCCCeEEEE--eCCCCeeEEEe-ecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc-------cc-eehcc-c-cccc
Q 021247 220 SDDTHVHMY--DAEGKSLVTAM-SGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNM-------RA-AMQSM-T-NHTD 286 (315)
Q Consensus 220 ~~d~~i~~w--d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~-~~~~~-~-~~~~ 286 (315)
.....+.++ +.+..++...- .....+++++.+-+++..++.+..+|.+.++..+. +. .+... . ...+
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~ 225 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD 225 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC
Confidence 877777765 55333332221 23356688888886667999999999999998763 11 22211 1 1235
Q ss_pred ceEEE---EEee--CC------CEEEEEeCCCcEEE
Q 021247 287 QVWGV---SFRP--LG------GRVVSVSDDKSISL 311 (315)
Q Consensus 287 ~v~~~---~~s~--~~------~~l~s~~~d~~i~i 311 (315)
.|+++ .+.| .+ ..++.++.+|.|-.
T Consensus 226 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 226 IVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 67776 5555 22 24888889998873
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.65 E-value=0.0078 Score=41.03 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=61.4
Q ss_pred EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
.|..+|..-+++|+.|..|++|+-. +.+..+.. ...+++++-... ..|+.+..+|+|-+|+-.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e--------------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE--------------TDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec--------------ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 3455566667889999999999864 34444422 223667776655 678999999999999864
Q ss_pred cceeeeeecCCccceEEEEEcCC---CCcEEEEEeCCCeEE
Q 021247 189 RAKFLHHLEGHFMPVRSLVYSPV---DPRVLFSASDDTHVH 226 (315)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~ 226 (315)
......+ .. ..+.++.+... +-.-|++|-.+|.|-
T Consensus 72 ~RlWRiK-SK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIK-SK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeec-cC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332222 11 23455554432 234678888887763
No 359
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.65 E-value=0.017 Score=44.82 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=108.8
Q ss_pred CCeEEEEECCCCceeE-EeeCCcccEEEEEECCCC--CeEEEEecCCCeEEEEecC--CcceeeeecCCCCCCCCCCccC
Q 021247 81 DSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKG--TTLAVAGGGSASVKLWDTA--TWNLIATLSIPRPEGLKPTDKS 155 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (315)
.+.|.-||...++..+ +++..+ ..++.+--.+ ..+++.++..-.|.-||.. ..+...++.--.+ .
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~--------d 105 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP--------D 105 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc--------h
Confidence 4456668887765433 333322 2222222111 2344445544455668743 2223332210000 0
Q ss_pred CCCcceEEEEECCCCCEEEEecC-C---------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeE
Q 021247 156 SSKKFVLSVAWSPDGRRIACGSM-D---------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV 225 (315)
Q Consensus 156 ~~~~~i~~~~~~~~~~~l~~~s~-d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 225 (315)
..+.+.+.-..+|+|++++ |.+ | |.++.|-+.. .+..+...-...+.++|+.+...+.+.-+.+-.|
T Consensus 106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 1122345566789998843 432 1 2233332211 1111111222345778886555566677778888
Q ss_pred EEEe--CCCCe-----eEEEeec----ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEe
Q 021247 226 HMYD--AEGKS-----LVTAMSG----HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFR 294 (315)
Q Consensus 226 ~~wd--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 294 (315)
.-|| ..++. .+..+.. .....-.++++.+|.+.++.-..++|...|..+++.+.++.-...++++++|-
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 7777 44432 2222221 11112234556678888888888999999999999999988888999999997
Q ss_pred e
Q 021247 295 P 295 (315)
Q Consensus 295 ~ 295 (315)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 4
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00011 Score=66.23 Aligned_cols=109 Identities=15% Similarity=0.251 Sum_probs=81.0
Q ss_pred EEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh
Q 021247 204 RSLVYSPVDPRVLFSAS----DDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ 279 (315)
Q Consensus 204 ~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 279 (315)
+-..|+|..+ +++.++ ..|.+.||--.+..... ..-.-.+++++|+|..-.|+.|-.-|.+.+|..+..+...
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGEPqr~--Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGEPQRD--VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCCCCcc--cccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3456788665 444333 45788888543321111 0011225679999998899999999999999998877776
Q ss_pred cccccccceEEEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 280 SMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 280 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
....|..++..+.|||+|+.++++..-|.+.+|-++
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 667899999999999999999999999999999763
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.63 E-value=0.026 Score=46.32 Aligned_cols=225 Identities=17% Similarity=0.190 Sum_probs=119.4
Q ss_pred cEEEEeeCCCcEEEEcCCC-CcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEe-----------
Q 021247 31 ALLLTGSLDETVKLWRPDD-MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATL----------- 98 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~----------- 98 (315)
..|+.|..+| +.+++... .+..+.. +...|..+..-++-+.++.-+ |+.++++++..-......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 4688888888 88888732 2222222 233489999888777666554 599999998765433210
Q ss_pred ---eCCcccEEEEE--ECCCCCeEEEEecCCCeEEEEecCCc-----ceeeeecCCCCCCCCCCccCCCCcceEEEEECC
Q 021247 99 ---EASPSEVWQMQ--FDPKGTTLAVAGGGSASVKLWDTATW-----NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP 168 (315)
Q Consensus 99 ---~~~~~~v~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 168 (315)
......+...+ -.+.+...++. .....|.+|..... +....+.++ ..+..++|.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~lp--------------~~~~~i~~~- 147 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISLP--------------DPPSSIAFL- 147 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEcC--------------CCcEEEEEe-
Confidence 01112233333 11223223332 33457777766432 334444433 236788888
Q ss_pred CCCEEEEecCCCcEEEEEcccceeeeeecCC------------ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKFLHHLEGH------------FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
++.++.|..+ ...+.|+.++....-+... ..++..+... ++.+|++- |..-...|..+....
T Consensus 148 -~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~r 221 (275)
T PF00780_consen 148 -GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPSR 221 (275)
T ss_pred -CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcCc
Confidence 5577777644 5888998866543322111 1233333332 23444432 223333343332211
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH 284 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 284 (315)
...-.=...+.++++. ..+|+..+. +.|.||++.+++.++++...
T Consensus 222 ~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 222 KSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1111112234455553 346766655 55999999999888887653
No 362
>PHA02713 hypothetical protein; Provisional
Probab=97.62 E-value=0.017 Score=52.43 Aligned_cols=184 Identities=10% Similarity=0.100 Sum_probs=91.6
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCceeEEeeCCcc---cEEEEEECCCCCeEEEEecCCC-----eEEEEecCCcc
Q 021247 71 SGIIAASASLD------SFVRVFDVDTNASIATLEASPS---EVWQMQFDPKGTTLAVAGGGSA-----SVKLWDTATWN 136 (315)
Q Consensus 71 ~g~~l~s~~~d------~~i~~w~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~d~-----~i~~~d~~~~~ 136 (315)
++.+++.||.+ ..+..+|..++.-.. +..-+. ....+.. +..+++.||.++ .+..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 56777777754 346677877664321 111111 1112222 234666676543 47788887654
Q ss_pred eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC-----------------------CcEEEEEcccceee
Q 021247 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD-----------------------GTISVFDVTRAKFL 193 (315)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d-----------------------g~i~i~d~~~~~~~ 193 (315)
....-..+.+ ... ...+++ +|+..+.|+.+ ..+..||+.+.+..
T Consensus 379 W~~~~~mp~~-------r~~----~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 379 WKMLPDMPIA-------LSS----YGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred EEECCCCCcc-------ccc----ccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 4322111111 011 111222 56666777654 24778998877654
Q ss_pred ee--ecCCccceEEEEEcCCCCcEEEEEeCC------CeEEEEeCCC-C--eeEEEeecccccEEEEEEcCCCCeEEEEe
Q 021247 194 HH--LEGHFMPVRSLVYSPVDPRVLFSASDD------THVHMYDAEG-K--SLVTAMSGHASWVLSVDASPDGAAITTGS 262 (315)
Q Consensus 194 ~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 262 (315)
.. +....... +++. .++++.+.|+.+ ..+..||..+ . +.+..+.........+.+ ++++.++||
T Consensus 446 ~v~~m~~~r~~~-~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 446 TLPNFWTGTIRP-GVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHC 520 (557)
T ss_pred ecCCCCcccccC-cEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEee
Confidence 22 21111111 1222 245677777654 2467899876 3 223333222111212222 678889999
Q ss_pred CCC--cEEEEecCccc
Q 021247 263 SDR--TVKLWDLNMRA 276 (315)
Q Consensus 263 ~d~--~i~iwd~~~~~ 276 (315)
.|+ .+..||..+.+
T Consensus 521 ~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 521 YESYMLQDTFNVYTYE 536 (557)
T ss_pred ecceeehhhcCccccc
Confidence 888 66677776543
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.62 E-value=0.043 Score=49.92 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=105.3
Q ss_pred CCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEee------CCC--eEEEEECCCCceeEEeeCCcccEEEEEE
Q 021247 39 DETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASAS------LDS--FVRVFDVDTNASIATLEASPSEVWQMQF 110 (315)
Q Consensus 39 d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~------~d~--~i~~w~~~~~~~~~~~~~~~~~v~~~~~ 110 (315)
||.+...+...-....-..+....+.+.+++|+|..++... .|. .|.+++... .. ..+... .....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceE
Confidence 77776654322111111112333577889999999887554 244 454545422 22 222222 23667789
Q ss_pred CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEE---EEc
Q 021247 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV---FDV 187 (315)
Q Consensus 111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i---~d~ 187 (315)
+|+|..+.+....+..+++.+......+..+.....+ ... .....|..+.|+|||..++... ++.|++ -..
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence 9998766555433233444433222222222221111 000 1233489999999999887655 467777 332
Q ss_pred ccce-ee---eeecC-CccceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEEeec--ccccEEEEEEcCCCCeE
Q 021247 188 TRAK-FL---HHLEG-HFMPVRSLVYSPVDPRVLFSASDDT--HVHMYDAEGKSLVTAMSG--HASWVLSVDASPDGAAI 258 (315)
Q Consensus 188 ~~~~-~~---~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l 258 (315)
..+. .+ ..+.. -...+.++.|.+ ++.++ .+..++ .+...++.+.... .+.. ....+..++-++. .+
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~i 553 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TV 553 (591)
T ss_pred CCCceeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eE
Confidence 3333 11 11222 222357889987 44444 444433 3444444433221 1122 2455667776653 34
Q ss_pred EEEeCCCc
Q 021247 259 TTGSSDRT 266 (315)
Q Consensus 259 ~s~~~d~~ 266 (315)
+....++.
T Consensus 554 yv~~~~g~ 561 (591)
T PRK13616 554 YVTDARAV 561 (591)
T ss_pred EEEcCCce
Confidence 44555653
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.61 E-value=0.035 Score=47.39 Aligned_cols=233 Identities=18% Similarity=0.175 Sum_probs=115.5
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceee-ccc-------c---------ccceEEEEeCCCCCEEE
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERT-NTG-------H---------CLGVVSVAAHPSGIIAA 76 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~-~~~-------h---------~~~v~~~~~~~~g~~l~ 76 (315)
...+....|+|.++ .++--.++.|.+++..+.+..+. ..| - -..-..+.|+|+|++|+
T Consensus 42 ~~~~~~~~~sP~g~-----~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la 116 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-----YIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA 116 (353)
T ss_dssp ETTBSEEEE-SSST-----EEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred ccccccceeecCCC-----eeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE
Confidence 45778889999876 23334578899998765543221 112 0 01124678999999887
Q ss_pred EeeCC-CeEE-----------------------------------EEECCCCceeE-E-e---eCCcccEEEEEECCCCC
Q 021247 77 SASLD-SFVR-----------------------------------VFDVDTNASIA-T-L---EASPSEVWQMQFDPKGT 115 (315)
Q Consensus 77 s~~~d-~~i~-----------------------------------~w~~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~ 115 (315)
....| ..++ ++++.+++... . . .....-+..+.|.+++.
T Consensus 117 ~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 117 FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred EEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 65443 2222 23332222110 0 0 01122356667777766
Q ss_pred eEEE-EecCC---CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEEC-CCCC-EEEEecCCCc--EEEEEc
Q 021247 116 TLAV-AGGGS---ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWS-PDGR-RIACGSMDGT--ISVFDV 187 (315)
Q Consensus 116 ~~~~-~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~s~dg~--i~i~d~ 187 (315)
.+++ ....+ ..+.+.|..+++.......... .--.......+. +++. +|.....+|. |.+++.
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~---------~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD---------GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS---------SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC---------cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 3333 22222 2344455554433222211000 000111234443 5555 4445557775 556666
Q ss_pred ccceeeeeecCCccceEE-EEEcCCCCcEEEEEeCC----CeEEEEeCC-CCeeEEEeecccccEEEEEEcCCCCeEEEE
Q 021247 188 TRAKFLHHLEGHFMPVRS-LVYSPVDPRVLFSASDD----THVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAITTG 261 (315)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d----~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 261 (315)
..+. ...+......|.. +.+.+.+..+++++..+ .+|..-+++ ++.. ..+......-..+.|||++++++-.
T Consensus 268 ~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 268 DGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred cccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEE
Confidence 6555 3355555566644 66777667777777763 366666777 4443 3444333322689999999987654
Q ss_pred e
Q 021247 262 S 262 (315)
Q Consensus 262 ~ 262 (315)
+
T Consensus 346 ~ 346 (353)
T PF00930_consen 346 Y 346 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 365
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.52 E-value=0.081 Score=49.41 Aligned_cols=295 Identities=12% Similarity=0.124 Sum_probs=155.4
Q ss_pred ccceEEEEEeecCCCC--CcEEEEeeCCCcEEEEcCC-CCc-ceee-ccc--cccceEEEEeCCCCCEEEEeeCCCeEEE
Q 021247 14 EESVWAVTWVPATETR--PALLLTGSLDETVKLWRPD-DMQ-LERT-NTG--HCLGVVSVAAHPSGIIAASASLDSFVRV 86 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~--~~~l~sgs~d~~v~~w~~~-~~~-~~~~-~~~--h~~~v~~~~~~~~g~~l~s~~~d~~i~~ 86 (315)
+.+|.|+.++|.+..+ ..+++.|.++..+.+.-.. +.. .... +.+ -...|.-..+-.++.+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4589999999875432 2489999988876555322 111 1111 111 1234666677778899999999999886
Q ss_pred EECCC--Ccee--EEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee------------eeecCC------
Q 021247 87 FDVDT--NASI--ATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI------------ATLSIP------ 144 (315)
Q Consensus 87 w~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------------~~~~~~------ 144 (315)
+.+.. +..- +.......|+.--.|+..+..-+++++ |.-..+|..+. +++ +.+..+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~-kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNG-KLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCC-cEEEeccchHHhhhhcccccccCCceE
Confidence 65543 3211 111122233333334333332222222 22222222111 100 000000
Q ss_pred --------------CCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----------CC---cEEEEEcccceeeeee
Q 021247 145 --------------RPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----------DG---TISVFDVTRAKFLHHL 196 (315)
Q Consensus 145 --------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----------dg---~i~i~d~~~~~~~~~~ 196 (315)
+-+...+. .-.-....+.+++.+....+++.+. .. .++++|-.+.+.+...
T Consensus 688 ~~~~~~~l~i~tid~iqkl~ir-tvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIR-TVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhccee-eecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 00000000 0011122345666654444433322 11 2566666555544332
Q ss_pred cC----CccceEEEEEcCCCCcEEEEEeC----------CCeEEEEeCCCCeeEEEeecc--cccEEEEEEcCCCCeEEE
Q 021247 197 EG----HFMPVRSLVYSPVDPRVLFSASD----------DTHVHMYDAEGKSLVTAMSGH--ASWVLSVDASPDGAAITT 260 (315)
Q Consensus 197 ~~----~~~~v~~~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s 260 (315)
+- .-..+.+..|..+...+++.|.. .|.|.+|.......+.....+ .+.+.++.. -+|+++|
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA- 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA- 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE-
Confidence 21 11245566687654566666652 467777776553222222222 344554432 2566665
Q ss_pred EeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 261 GSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+-+..|++|++..++.++.-.++..++..+.+.-.|..++.|..=+.|.+-.|
T Consensus 845 -~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 845 -GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred -ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 55678999999988788877788889999999999999999988787776554
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00075 Score=59.02 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=74.5
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceE-EEEeCCCCCEEEEeeCCCeEEEEECCCC
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVV-SVAAHPSGIIAASASLDSFVRVFDVDTN 92 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~-~~~~~~~g~~l~s~~~d~~i~~w~~~~~ 92 (315)
.-.+.-+.|.|.-. ++|.+-.+|.|-+.... .+....++-|...++ +++|.|||+.++.|-.||+|++-|++++
T Consensus 20 ~~~i~~~ewnP~~d----LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD----LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccc----hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34788899999654 79999999999988876 666777776777777 9999999999999999999999999998
Q ss_pred ceeEEe-eCCcccEEEEEECC
Q 021247 93 ASIATL-EASPSEVWQMQFDP 112 (315)
Q Consensus 93 ~~~~~~-~~~~~~v~~~~~~~ 112 (315)
..+... .....+|..+-|.+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 776542 22234566666654
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.43 E-value=0.086 Score=47.53 Aligned_cols=204 Identities=13% Similarity=0.064 Sum_probs=113.2
Q ss_pred cEEEEeeCCCcEEEEcCCCCcceeeccccc-cceE---EEEeC-----CCCCEEEEeeCCCeEEEEECCCCceeEEeeCC
Q 021247 31 ALLLTGSLDETVKLWRPDDMQLERTNTGHC-LGVV---SVAAH-----PSGIIAASASLDSFVRVFDVDTNASIATLEAS 101 (315)
Q Consensus 31 ~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~-~~v~---~~~~~-----~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 101 (315)
..++.++.++.|.-.|..+++......... ..+. +.... -.+..++.++.|+.+.-.|..+++.+......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~ 149 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNG 149 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccc
Confidence 467888888999999988887765432110 0111 11000 12345666788999999999999887655421
Q ss_pred ccc-EEEEEECC--CCCeEEEEec-----CCCeEEEEecCCcceeeeecCCCCCCC-----------CCC---c-----c
Q 021247 102 PSE-VWQMQFDP--KGTTLAVAGG-----GSASVKLWDTATWNLIATLSIPRPEGL-----------KPT---D-----K 154 (315)
Q Consensus 102 ~~~-v~~~~~~~--~~~~~~~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~-----------~~~---~-----~ 154 (315)
... -..+.-.| .+..+++..+ .++.|..+|.++++.+..+....+... ++. . .
T Consensus 150 ~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~ 229 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWK 229 (527)
T ss_pred cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccc
Confidence 100 00011111 1223443322 268999999999999887654322100 000 0 0
Q ss_pred -CCCCcceEEEEECCCCCEEEEecCC-----C-----------cEEEEEcccceeeeeecC--Cc-------cceEEEEE
Q 021247 155 -SSSKKFVLSVAWSPDGRRIACGSMD-----G-----------TISVFDVTRAKFLHHLEG--HF-------MPVRSLVY 208 (315)
Q Consensus 155 -~~~~~~i~~~~~~~~~~~l~~~s~d-----g-----------~i~i~d~~~~~~~~~~~~--~~-------~~v~~~~~ 208 (315)
.....+ ..+++.++.+++..+..+ + .|.-.|+++++..=.++. |. ....-+..
T Consensus 230 ~gg~~~W-~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 230 TGGGATW-GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred cCCCCcc-CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 000111 245777776666665422 2 577778888887544332 21 11112222
Q ss_pred cCCCC---cEEEEEeCCCeEEEEeCCCCeeE
Q 021247 209 SPVDP---RVLFSASDDTHVHMYDAEGKSLV 236 (315)
Q Consensus 209 ~~~~~---~~l~s~~~d~~i~~wd~~~~~~~ 236 (315)
. .++ ..++.+..+|.+++.|.++++++
T Consensus 309 ~-~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 K-KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred c-cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1 233 37889999999999999888765
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.078 Score=46.18 Aligned_cols=197 Identities=9% Similarity=0.155 Sum_probs=94.1
Q ss_pred eEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceE
Q 021247 83 FVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVL 162 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (315)
.|++++.. |..+..+....+.+..+.|..+...+++ ..||.+++||... +. .+.++.... ........+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV--~~dG~v~vy~~~G-~~--~fsl~~~i~----~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVV--QSDGTVRVYDLFG-EF--QFSLGEEIE----EEKVLECRIF 131 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEE--EcCCEEEEEeCCC-ce--eechhhhcc----ccCccccccc
Confidence 47787764 4455555555578999999887655444 4799999999863 22 232221100 0000001111
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccce-eee---eecCCc-----c-ceEE-EEEcCCCCcEEEEEeCCCeEEEEeCC
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAK-FLH---HLEGHF-----M-PVRS-LVYSPVDPRVLFSASDDTHVHMYDAE 231 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~-~~~---~~~~~~-----~-~v~~-~~~~~~~~~~l~s~~~d~~i~~wd~~ 231 (315)
...+..+| ++.-+.++.+++..-.... ... .+.... . .... ..++. +....+....++.+.+.+..
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDEN 208 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcc
Confidence 12222233 3333344455444321111 101 111000 0 0000 11222 22233333344444433322
Q ss_pred CCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehccccc-ccceEEEEEeeC
Q 021247 232 GKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNH-TDQVWGVSFRPL 296 (315)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~ 296 (315)
.... +. ..+++..+++||+++++|.-..+|.+.+...+-.+.+..+... ......+.|.-+
T Consensus 209 ~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 209 SFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred cccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 2111 11 2357999999999999999999999988876554444333222 223445555443
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.38 E-value=0.061 Score=44.66 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=120.8
Q ss_pred CCcEEEEcCCCCcceee--ccc-ccc----ceEEEEeCCCCCEEEE--eeCCCeEEEEECCCCceeEEeeCCcccEEEEE
Q 021247 39 DETVKLWRPDDMQLERT--NTG-HCL----GVVSVAAHPSGIIAAS--ASLDSFVRVFDVDTNASIATLEASPSEVWQMQ 109 (315)
Q Consensus 39 d~~v~~w~~~~~~~~~~--~~~-h~~----~v~~~~~~~~g~~l~s--~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~ 109 (315)
+..|.+||..+...... ++. |.. ....+.++.+|++++. .+--..|-|-|+...+.+..+.... ++.+-
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iy 143 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIY 143 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEE
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEE
Confidence 55689999888765543 232 121 1123456677765543 3444557777777766666555321 22222
Q ss_pred ECCCCCeEEEEecCCCeEEEEecC-CcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 110 FDPKGTTLAVAGGGSASVKLWDTA-TWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 110 ~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
|.++.-+.+-+.||.+.-..+. .++...+-. .. +.+ .....+..-++...+..++--+.+|.|+--|+.
T Consensus 144 --P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~--F~~----~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 144 --PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST--KV--FDP----DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp --EEETTEEEEEETTSCEEEEEETSTSSEEEEEE--EE--SST----TTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred --ecCCCceEEEecCCceEEEEECCCCCEeEeec--cc--cCC----CCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 2222123344568888877776 344432110 00 000 001112223334444455556778888888875
Q ss_pred ccee--eeeecCC----------ccceEEEEEcCCCCcEEEEEe--CCC-------eEEEEeCCCCeeEEEeecccccEE
Q 021247 189 RAKF--LHHLEGH----------FMPVRSLVYSPVDPRVLFSAS--DDT-------HVHMYDAEGKSLVTAMSGHASWVL 247 (315)
Q Consensus 189 ~~~~--~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~--~d~-------~i~~wd~~~~~~~~~~~~~~~~i~ 247 (315)
.... ...+..- .+.-.-+++++..+++++.-- .++ .|.+||+++++.+.++.- ...+.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~ 292 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPID 292 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEES
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccc
Confidence 4432 2222110 011234567664554444321 122 488899999999888763 23466
Q ss_pred EEEEcCCCC-eEEE-EeCCCcEEEEecCccceehcccc
Q 021247 248 SVDASPDGA-AITT-GSSDRTVKLWDLNMRAAMQSMTN 283 (315)
Q Consensus 248 ~~~~~~~~~-~l~s-~~~d~~i~iwd~~~~~~~~~~~~ 283 (315)
++.++.+.+ +|.+ ...++.+.+||..+++.++.+..
T Consensus 293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 888888765 5544 45688999999999998887754
No 370
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.36 E-value=0.072 Score=45.08 Aligned_cols=222 Identities=15% Similarity=0.158 Sum_probs=102.2
Q ss_pred EeCCCCCEEE-EeeCC--CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247 67 AAHPSGIIAA-SASLD--SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143 (315)
Q Consensus 67 ~~~~~g~~l~-s~~~d--~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 143 (315)
+|.++|+.|+ ++..| ..+++.|+.+++..+.-+..........++|+++.++..- ....++-.|+++.+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEEC
Confidence 5678886555 44444 4577778888876655443323233455678877765543 345888889998877666655
Q ss_pred CCCCCCCCCccCCCCcceEEEEE--CCCCCEEEEec----------------------CCCcEEEEEcccceeeeeecCC
Q 021247 144 PRPEGLKPTDKSSSKKFVLSVAW--SPDGRRIACGS----------------------MDGTISVFDVTRAKFLHHLEGH 199 (315)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~s----------------------~dg~i~i~d~~~~~~~~~~~~~ 199 (315)
+.. +.-...| +.++..++-.- ....|...|+.+++....+. .
T Consensus 121 p~~-------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~ 186 (386)
T PF14583_consen 121 PDD-------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-D 186 (386)
T ss_dssp -TT-------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-E
T ss_pred Ccc-------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-c
Confidence 432 2222333 33444433211 12345556777666433332 3
Q ss_pred ccceEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEEeecc--cccEEEEEEcCCCCeEEEE-----eCCCc
Q 021247 200 FMPVRSLVYSPVDPRVLFSASD------DTHVHMYDAEGKSLVTAMSGH--ASWVLSVDASPDGAAITTG-----SSDRT 266 (315)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~-----~~d~~ 266 (315)
..-+.-+.|+|.++.+|+-|-. |..|.+-+..+... ..+..+ ...+..=-|.|+|..+.-- +.+..
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 3456778899988888777643 22444445443322 222222 2233344588888755321 22445
Q ss_pred EEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247 267 VKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306 (315)
Q Consensus 267 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 306 (315)
|.-+|+.+++..... ........--++||.+++.=|.|
T Consensus 266 i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 266 IAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred EEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence 666677766443222 22345566777889887754444
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.36 E-value=0.045 Score=49.71 Aligned_cols=139 Identities=10% Similarity=0.080 Sum_probs=72.5
Q ss_pred CCCEEEEecCCC-----cEEEEEcccceeee--eecCCccceEEEEEcCCCCcEEEEEeCC-------------------
Q 021247 169 DGRRIACGSMDG-----TISVFDVTRAKFLH--HLEGHFMPVRSLVYSPVDPRVLFSASDD------------------- 222 (315)
Q Consensus 169 ~~~~l~~~s~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------- 222 (315)
+|+..+.|+.++ .+..||..+.+... .+.........+. .++.+.+.||.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV---LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE---ECCEEEEEeCCCccccccccccccccccccc
Confidence 566777777654 48889988776533 2211111111122 256677777754
Q ss_pred ----CeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCC------cEEEEecCc---cceehcccccccc
Q 021247 223 ----THVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDR------TVKLWDLNM---RAAMQSMTNHTDQ 287 (315)
Q Consensus 223 ----~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~------~i~iwd~~~---~~~~~~~~~~~~~ 287 (315)
..+..||.++.+- +..+... ....-...-++++.+.||.++ .|..||..+ +..+..++.....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~--r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTG--TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcc--cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 2467788765432 2222111 111111222566777777542 366788765 3444445443333
Q ss_pred eEEEEEeeCCCEEEEEeCCC--cEEEeec
Q 021247 288 VWGVSFRPLGGRVVSVSDDK--SISLYEY 314 (315)
Q Consensus 288 v~~~~~s~~~~~l~s~~~d~--~i~i~~~ 314 (315)
...+++ +|+..+.||.|+ ++..||.
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 333333 566668888888 5655553
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.33 E-value=0.11 Score=46.75 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=90.4
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccc--ccc--ceEEEEeCCCCCEEEEee-----CCCeEEEEECCCCceeEEeeCCc
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTG--HCL--GVVSVAAHPSGIIAASAS-----LDSFVRVFDVDTNASIATLEASP 102 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~--h~~--~v~~~~~~~~g~~l~s~~-----~d~~i~~w~~~~~~~~~~~~~~~ 102 (315)
.++.++.|+.+.-.|..+++....... +.. .+.+--.-.++.+++..+ .+|.|+.+|.++++.+..+...+
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 577788899999999888887654321 111 111111111444444322 36899999999988765542211
Q ss_pred -------------------------------ccEE-EEEECCCCCeEEEEecC----CC-----------eEEEEecCCc
Q 021247 103 -------------------------------SEVW-QMQFDPKGTTLAVAGGG----SA-----------SVKLWDTATW 135 (315)
Q Consensus 103 -------------------------------~~v~-~~~~~~~~~~~~~~~~~----d~-----------~i~~~d~~~~ 135 (315)
..+| .++++|....+++..+. ++ .|.-.|++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG 281 (527)
T TIGR03075 202 GDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG 281 (527)
T ss_pred CCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC
Confidence 1233 34677766655543322 12 5666788888
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC---EEEEecCCCcEEEEEcccceee
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR---RIACGSMDGTISVFDVTRAKFL 193 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~s~dg~i~i~d~~~~~~~ 193 (315)
+....+.......- .........-+.+..+|+ .++.+.++|.+++.|.++++.+
T Consensus 282 ~~~W~~Q~~~~D~w----D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 282 KIKWHYQTTPHDEW----DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CEEEeeeCCCCCCc----cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 88777644222110 000001111223334665 6778999999999999998875
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.31 E-value=0.086 Score=48.06 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=97.9
Q ss_pred cEEEEEECCCCCeEEEEec-----CC--CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe
Q 021247 104 EVWQMQFDPKGTTLAVAGG-----GS--ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG 176 (315)
Q Consensus 104 ~v~~~~~~~~~~~~~~~~~-----~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 176 (315)
.+...+++|+++.+++... .| ..|.+++... .. ..+. ... ....-.|+|+|+.++..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt-------------~g~-~~t~PsWspDG~~lw~v 414 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVL-------------EGH-SLTRPSWSLDADAVWVV 414 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeee-------------cCC-CCCCceECCCCCceEEE
Confidence 5678889999998877652 23 3455555321 11 1110 001 14566789998877655
Q ss_pred cCC------------CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEE---EeCCCCe-eE---E
Q 021247 177 SMD------------GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM---YDAEGKS-LV---T 237 (315)
Q Consensus 177 s~d------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~---wd~~~~~-~~---~ 237 (315)
... +.+.+.++..+.... .....|..+.|+|++.++++.. ++.|++ -....+. .+ .
T Consensus 415 ~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 415 VDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred ecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccE
Confidence 422 233333443333222 2245799999999665555544 467766 3433443 11 1
Q ss_pred Eeec-ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-cccc--cccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247 238 AMSG-HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTN--HTDQVWGVSFRPLGGRVVSVSDDKSIS 310 (315)
Q Consensus 238 ~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~ 310 (315)
.+.. -...+.++.|.+++.++ ++..++...+|.+....... .+.. ...++.+|+=++. .|+....++.++
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred EeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 1222 22335789999998854 55555555566554322211 1122 3467777777763 466656666444
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.061 Score=43.11 Aligned_cols=232 Identities=19% Similarity=0.222 Sum_probs=124.0
Q ss_pred EEEEEeecCCCCCcEEEEeeCCCc-EEEEcCCCCcceee--------ccccccceEEEEeCCCCCEEEEeeCC-----Ce
Q 021247 18 WAVTWVPATETRPALLLTGSLDET-VKLWRPDDMQLERT--------NTGHCLGVVSVAAHPSGIIAASASLD-----SF 83 (315)
Q Consensus 18 ~~v~~~~~~~~~~~~l~sgs~d~~-v~~w~~~~~~~~~~--------~~~h~~~v~~~~~~~~g~~l~s~~~d-----~~ 83 (315)
..++++|..+. -++-+-.=|+ ..++|+++.+.... +.||. .|||+|.+|.+.-.| |.
T Consensus 71 Hgi~~~p~~~r---avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 71 HGIAFHPALPR---AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred CCeecCCCCcc---eEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCce
Confidence 35666665432 2444444443 46677766554332 33442 489999999876444 77
Q ss_pred EEEEECCCCc-eeEEeeCCcccEEEEEECCCCCeEEEEecC------C-----------CeEEEEecCCcceeeeecCCC
Q 021247 84 VRVFDVDTNA-SIATLEASPSEVWQMQFDPKGTTLAVAGGG------S-----------ASVKLWDTATWNLIATLSIPR 145 (315)
Q Consensus 84 i~~w~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------d-----------~~i~~~d~~~~~~~~~~~~~~ 145 (315)
|-+||...+- .+-.+..+.--.-.+.+.++|..++++.++ . -.+.+.|..+++++.+..++.
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 8899987542 333444443334467788999987766541 1 123334444444444433331
Q ss_pred CCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcE-----EEEEcccceeeeeecC-------CccceEEEEEcCCCC
Q 021247 146 PEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTI-----SVFDVTRAKFLHHLEG-------HFMPVRSLVYSPVDP 213 (315)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i-----~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~ 213 (315)
. .+.-.|+.++..++|...+.+-..|.- .+=-...++.++.+.. -...|-+++.+..++
T Consensus 222 ~---------l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 222 S---------LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred h---------hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 1 122347788888888766655433311 0000112222222211 122456677765555
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 021247 214 RVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD 271 (315)
Q Consensus 214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd 271 (315)
-..+++=..+...+||.+++.++....- .....+..... =++..+.+|.+.++.
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~~--gf~vssg~G~~~~~s 346 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAKG--GFAVSSGQGRIIFYS 346 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEecccc--cccccceeccC--ceEEecCCceEEecc
Confidence 5555666667788999999987754321 11222333322 355556678887764
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.001 Score=58.23 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=62.1
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceE-EEEEeeCCCEEEEEeCCCcEEEeecC
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVW-GVSFRPLGGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~i~~~~ 315 (315)
..|.-+.|+|.-.++|.+..+|.|-+..++ ...+-+++.|...++ +++|.|||+.||.|=.||+|+|-|.+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 446778999999999999999999999998 666667777777777 99999999999999999999998863
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0056 Score=52.85 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=94.0
Q ss_pred CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-------CEEEEecCCCcEEE
Q 021247 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-------RRIACGSMDGTISV 184 (315)
Q Consensus 112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~s~dg~i~i 184 (315)
.+.+.++..+.....++-.|+..++.+..+..... |.-+.+.|+. ..-+.|-.+..|.-
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--------------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--------------INMVDITPDFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC--------------cceeeccCCcchhcccccccEEeecCCceEE
Confidence 34455666666667788889999999888765433 3333444432 12344556888999
Q ss_pred EEcccc-e-eeeeecCCc----cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeE
Q 021247 185 FDVTRA-K-FLHHLEGHF----MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAI 258 (315)
Q Consensus 185 ~d~~~~-~-~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 258 (315)
||++-. . .+.-...|. ....|++ ..+..+++.|+.+|.|++||.-.......+.+-..+|..+..+.+|.++
T Consensus 409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred ecccccCcceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEE
Confidence 998622 2 122222222 1223333 2356689999999999999975555555667778899999999999987
Q ss_pred EEEeCCCcEEEEec
Q 021247 259 TTGSSDRTVKLWDL 272 (315)
Q Consensus 259 ~s~~~d~~i~iwd~ 272 (315)
+.. .+..+.+-++
T Consensus 487 l~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 487 LAT-CKTYLLLIDT 499 (644)
T ss_pred EEe-cccEEEEEEE
Confidence 654 4566666665
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.21 E-value=0.057 Score=49.10 Aligned_cols=217 Identities=17% Similarity=0.178 Sum_probs=106.1
Q ss_pred CcEEEEeeCCC------cEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCC------CeEEEEECCCCceeE
Q 021247 30 PALLLTGSLDE------TVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLD------SFVRVFDVDTNASIA 96 (315)
Q Consensus 30 ~~~l~sgs~d~------~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d------~~i~~w~~~~~~~~~ 96 (315)
..+++.||.++ .++.||+.+.+-.....- ....-.++.+ -.|.+.++||.| .++..+|...++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 45788888774 578888765532111110 1111222222 245788889888 346677777665322
Q ss_pred EeeCCcccEEEEEECCCCCeEEEEecCCCe-----EEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSAS-----VKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
. ..-..+-.......-+..+++.||.||. +-.||..+.+.-..-..+. .......+. -+|.
T Consensus 364 ~-a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-----------~r~~~gv~~--~~g~ 429 (571)
T KOG4441|consen 364 V-APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-----------RRSGHGVAV--LGGK 429 (571)
T ss_pred c-CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-----------ceeeeEEEE--ECCE
Confidence 1 1111111111111123457777887754 5566665533321111100 011111122 2567
Q ss_pred EEEEecCCC------cEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeE--
Q 021247 172 RIACGSMDG------TISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT-----HVHMYDAEGKSLV-- 236 (315)
Q Consensus 172 ~l~~~s~dg------~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~-- 236 (315)
..++|+.++ ++..||..+++.... +....... .++. .++.+++.||.|+ ++..||.++.+-.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 777887544 478899888765432 22111111 1222 2567888888775 3667887765322
Q ss_pred EEeecccccEEEEEEcCCCCeEEEEeCCCc
Q 021247 237 TAMSGHASWVLSVDASPDGAAITTGSSDRT 266 (315)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 266 (315)
..+......+ .++ .-++++.++|+.|+.
T Consensus 507 ~~m~~~rs~~-g~~-~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 507 APMTSPRSAV-GVV-VLGGKLYAVGGFDGN 534 (571)
T ss_pred ccCccccccc-cEE-EECCEEEEEecccCc
Confidence 2222111111 111 125667788887764
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.0017 Score=49.80 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCcEEEEEcccceeeee-ecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc-ccE
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKFLHH-LEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA-SWV 246 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i 246 (315)
-+..+++|+.+|.|.+|.....-.... ......+|.++.-.-..+.+..++..|+.|+.|+.+..+.+.....|. ..+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356899999999999998752211111 111122333222121234478899999999999999888877777777 555
Q ss_pred EEEEEcCCCCeEEEE--eCCCcEEEEecCc
Q 021247 247 LSVDASPDGAAITTG--SSDRTVKLWDLNM 274 (315)
Q Consensus 247 ~~~~~~~~~~~l~s~--~~d~~i~iwd~~~ 274 (315)
..+..+..++.++.+ +.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 556666666777777 7777888887753
No 379
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.047 Score=41.66 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCCEEEEeeCC--CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCC
Q 021247 71 SGIIAASASLD--SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEG 148 (315)
Q Consensus 71 ~g~~l~s~~~d--~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 148 (315)
+|.++.+.+.- ..||+||+.+++.+......+..+..=-...-+..+..-.-.++.-..||.++.+.+..+..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-- 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-- 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc--
Confidence 45666666543 46999999999877654433222221111122334444445677888899988877766644322
Q ss_pred CCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC--Cccce---EEEEEcCCCCcEEEEEeCCC
Q 021247 149 LKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG--HFMPV---RSLVYSPVDPRVLFSASDDT 223 (315)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~--~~~~v---~~~~~~~~~~~~l~s~~~d~ 223 (315)
-..++ .++..|+.+.....+..-|..+.....++.- ...+| +.+.|- ++.+++-.-...
T Consensus 133 ------------GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~ 196 (262)
T COG3823 133 ------------GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTT 196 (262)
T ss_pred ------------ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeec
Confidence 11222 3555566665556677777765443332211 11122 233333 455555555555
Q ss_pred eEEEEeCCCCeeEEEee------------cccccEEEEEEcCCC-CeEEEE
Q 021247 224 HVHMYDAEGKSLVTAMS------------GHASWVLSVDASPDG-AAITTG 261 (315)
Q Consensus 224 ~i~~wd~~~~~~~~~~~------------~~~~~i~~~~~~~~~-~~l~s~ 261 (315)
.|...|.++++++..+. .|..-.+.+++.|++ ++++||
T Consensus 197 ~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 197 RIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 56666666666554332 234456778888876 555655
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.16 E-value=0.069 Score=48.54 Aligned_cols=220 Identities=21% Similarity=0.212 Sum_probs=111.4
Q ss_pred CCCCCEEEEeeCCC------eEEEEECCCCceeEEeeC-CcccEEEEEECCCCCeEEEEecCC------CeEEEEecCCc
Q 021247 69 HPSGIIAASASLDS------FVRVFDVDTNASIATLEA-SPSEVWQMQFDPKGTTLAVAGGGS------ASVKLWDTATW 135 (315)
Q Consensus 69 ~~~g~~l~s~~~d~------~i~~w~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~ 135 (315)
+..+.+++.||.++ .+..+|..++.-...... .+..-.+++.. ++.++++||.+ ..+..||.+..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33456777777773 577888877643322111 11122233333 23677888887 35777888776
Q ss_pred ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCc-----EEEEEcccceeeeeecCCccceEEEEEcC
Q 021247 136 NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGT-----ISVFDVTRAKFLHHLEGHFMPVRSLVYSP 210 (315)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 210 (315)
+....-....+ .... +++. -+|...++|+.||. +-.||..+.+.-..-... ..........
T Consensus 360 ~W~~~a~M~~~-----------R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~ 425 (571)
T KOG4441|consen 360 QWTPVAPMNTK-----------RSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAV 425 (571)
T ss_pred ceeccCCccCc-----------cccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEE
Confidence 54431111100 0001 1111 25677788888874 777888776643221111 1222222223
Q ss_pred CCCcEEEEEeCCC------eEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCCCc-----EEEEecCcc--
Q 021247 211 VDPRVLFSASDDT------HVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSDRT-----VKLWDLNMR-- 275 (315)
Q Consensus 211 ~~~~~l~s~~~d~------~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~-- 275 (315)
.++.+.+.||.++ .+..||..+.+- +..+..-.... .++ .-++.+.+.||.|+. |..+|..+.
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 3677888888554 467888776532 22222111111 122 235677888888763 667776543
Q ss_pred ceehcccccccceEEEEEeeCCCEEEEEeCCCc
Q 021247 276 AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS 308 (315)
Q Consensus 276 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 308 (315)
..+..+......+..+.. ++...+.||.||.
T Consensus 504 ~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred eEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 233323322222222222 3445577777763
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.12 E-value=0.11 Score=42.57 Aligned_cols=229 Identities=15% Similarity=0.158 Sum_probs=116.6
Q ss_pred CCCCCEEEEeeCCCeEEEEECCCC-ceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeec-CCCC
Q 021247 69 HPSGIIAASASLDSFVRVFDVDTN-ASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLS-IPRP 146 (315)
Q Consensus 69 ~~~g~~l~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~ 146 (315)
...++.|+.|..+| +.+++.... ....... ..+|..+...|.-+.+++- .|+++.++++.......... ...+
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccc
Confidence 34677888888888 999998332 2222222 2238888888876665554 35999999987644332110 0000
Q ss_pred CCCCCCccCCCCcceEEEE--ECCCCCEEEEecCCCcEEEEEcccc-----eeeeeecCCccceEEEEEcCCCCcEEEEE
Q 021247 147 EGLKPTDKSSSKKFVLSVA--WSPDGRRIACGSMDGTISVFDVTRA-----KFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219 (315)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~s~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 219 (315)
..............+...+ -...+...++......|.+|..... +....+.. ...+..+.|.+ ..++.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEE
Confidence 0000000001111233333 1223444444445558888877542 33444443 35678888873 355555
Q ss_pred eCCCeEEEEeCCCCeeEEEee--c----------ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceeh-ccccccc
Q 021247 220 SDDTHVHMYDAEGKSLVTAMS--G----------HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQ-SMTNHTD 286 (315)
Q Consensus 220 ~~d~~i~~wd~~~~~~~~~~~--~----------~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~ 286 (315)
..++ ..+.|+.++....... . ...++..+.. +++.+|+.- |..-.+.|.. |++.+ ..-.-..
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSS 229 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEcCC
Confidence 5444 6677877554332221 1 1122333333 345666542 3333333443 43332 1112234
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 287 QVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 287 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.+.++++.. .+|+..+.++ |.||++
T Consensus 230 ~p~~~~~~~--pyli~~~~~~-iEV~~~ 254 (275)
T PF00780_consen 230 APQSVAYSS--PYLIAFSSNS-IEVRSL 254 (275)
T ss_pred chhEEEEEC--CEEEEECCCE-EEEEEC
Confidence 556666643 4888877755 998875
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.0013 Score=50.55 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=80.5
Q ss_pred EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe-ecccccEEE-E
Q 021247 172 RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM-SGHASWVLS-V 249 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~-~ 249 (315)
.+..-+.+|.+.-++++..+....-.. .+.+..--+....-++.|+.+|.|.+|.....-..... ......|-+ +
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~---~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSER---FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhh---hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 345556777777777654332111100 01111111224457889999999999987522111111 111112222 2
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCccceehcccccc-cceEEEEEeeCCCEEEEE--eCCCcEEEeec
Q 021247 250 DASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT-DQVWGVSFRPLGGRVVSV--SDDKSISLYEY 314 (315)
Q Consensus 250 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~d~~i~i~~~ 314 (315)
..-.++.+..+++.||.||.|++.-.+.+.....|+ .++.....+..++.|+.. |.|..++.|++
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 222245588999999999999998877777666676 555555555566666666 77777777765
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.97 E-value=0.0041 Score=35.37 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=27.4
Q ss_pred cceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
..|..++|+|..++||.++.+|.|.+|.+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 348899999999999999999999999983
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.93 E-value=0.24 Score=43.32 Aligned_cols=250 Identities=15% Similarity=0.090 Sum_probs=122.7
Q ss_pred hhhccc-cceEEEEEeecCCCCCcEEEEeeCCCc----EEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCC-
Q 021247 9 VENAHE-ESVWAVTWVPATETRPALLLTGSLDET----VKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDS- 82 (315)
Q Consensus 9 ~~~~h~-~~v~~v~~~~~~~~~~~~l~sgs~d~~----v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~- 82 (315)
.+.++. -.+....++|+++ -++++-+..|. ++++|.++++.....-.. .....+.|.+++..++-...+.
T Consensus 117 l~~~~~~~~~~~~~~Spdg~---~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 117 LAKDGGYVSLGGFSVSPDGK---RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp GSTTSS-EEEEEEEETTTSS---EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTT
T ss_pred hhccCceEEeeeeeECCCCC---EEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcc
Confidence 334442 2333455666554 24555455554 899999888654432111 1122389999988766554333
Q ss_pred ----------eEEEEECCCCcee--EEeeCCccc--EEEEEECCCCCeEEEEecCC---CeEEEEecCCc----ceeeee
Q 021247 83 ----------FVRVFDVDTNASI--ATLEASPSE--VWQMQFDPKGTTLAVAGGGS---ASVKLWDTATW----NLIATL 141 (315)
Q Consensus 83 ----------~i~~w~~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d---~~i~~~d~~~~----~~~~~~ 141 (315)
.|+.|.+.+...- ..+...... ...+..+++++++++..... ..+.+.|+... .....+
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 3788888776542 444443333 56788899999887654433 45777777653 111111
Q ss_pred cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEe---cCCCcEEEEEccccee---eeeecCCcc--ceEEEEEcCCCC
Q 021247 142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACG---SMDGTISVFDVTRAKF---LHHLEGHFM--PVRSLVYSPVDP 213 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---s~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~ 213 (315)
..+. ......+... .+.+++.. ..++.|...++..... ...+..+.. .+..+.. .+.
T Consensus 273 ~~~~------------~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~ 337 (414)
T PF02897_consen 273 SPRE------------DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKD 337 (414)
T ss_dssp EESS------------SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETT
T ss_pred eCCC------------CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECC
Confidence 1110 0111222222 33333322 2345677777765542 224444444 3444443 355
Q ss_pred cEEEEEeCCC--eEEEEeCC-CCeeEEEeecccccEEEEEEcCCCCeE-EEE-eCC--CcEEEEecCccce
Q 021247 214 RVLFSASDDT--HVHMYDAE-GKSLVTAMSGHASWVLSVDASPDGAAI-TTG-SSD--RTVKLWDLNMRAA 277 (315)
Q Consensus 214 ~~l~s~~~d~--~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~~d--~~i~iwd~~~~~~ 277 (315)
.+++..-.++ .|.+++.. +.........-.+.|..+...+++..+ ++- +-- +++..+|+.+++.
T Consensus 338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 6666666665 47888988 443333222233445555545544322 222 221 3466666666543
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.93 E-value=0.25 Score=43.28 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=115.3
Q ss_pred ceEEEEeCCCCCEEE-EeeCC----CeEEEEECCCCceeEEe-eCCcccEEEEEECCCCCeEEEEecCC----------C
Q 021247 62 GVVSVAAHPSGIIAA-SASLD----SFVRVFDVDTNASIATL-EASPSEVWQMQFDPKGTTLAVAGGGS----------A 125 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~-s~~~d----~~i~~w~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d----------~ 125 (315)
.+....++|+|++++ +.+.. ..+++.|+.+++.+... ... . -..+.|.++++.++.+...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 444678999999877 33333 34999999999765432 221 1 12389999988877765333 2
Q ss_pred eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CC-CcEEEEEcccc----eeeeeec
Q 021247 126 SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MD-GTISVFDVTRA----KFLHHLE 197 (315)
Q Consensus 126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~d-g~i~i~d~~~~----~~~~~~~ 197 (315)
.|..|.+.+......+-...+ ........+..++++++|+..+ .+ ..+++.|+..+ .....+.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~---------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEP---------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-T---------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred EEEEEECCCChHhCeeEEeec---------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 467777765432211111111 0111256788899999876532 23 46888888764 2233333
Q ss_pred CCccceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCee---EEEeecccc--cEEEEEEcCCCCeEEEEeCCC--cE
Q 021247 198 GHFMPVRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSL---VTAMSGHAS--WVLSVDASPDGAAITTGSSDR--TV 267 (315)
Q Consensus 198 ~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d~--~i 267 (315)
.....+....-+. ++.+++.... .+.|...++..... ...+..+.. .+..+.... +.+++.--.++ .|
T Consensus 274 ~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 274 PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRL 351 (414)
T ss_dssp ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEE
Confidence 2333332222222 4444444432 45677777765432 224444444 455555432 33455555555 47
Q ss_pred EEEecC-ccceehcccccccceEEEEEeeCCCEE
Q 021247 268 KLWDLN-MRAAMQSMTNHTDQVWGVSFRPLGGRV 300 (315)
Q Consensus 268 ~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l 300 (315)
+++++. ..........-.+.|..+...+++..+
T Consensus 352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred EEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence 888988 433322211122345555555555544
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.11 Score=43.22 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=88.4
Q ss_pred ceEEEEeCCCCCEEEEeeC---------CCeEEEEECC-CCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247 62 GVVSVAAHPSGIIAASASL---------DSFVRVFDVD-TNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~---------d~~i~~w~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d 131 (315)
..+.+.+.|+|.+.++... ...=.||.+. .+..+..+..+-..-+.++|+|+++.++++=+..+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3456777888877664433 1112345554 44455544444455678999999998888777778888887
Q ss_pred cCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-cEEEEEcccceeeeeecCCccceEEEEEcC
Q 021247 132 TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-TISVFDVTRAKFLHHLEGHFMPVRSLVYSP 210 (315)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 210 (315)
+.... ...... .............-.++...+|++-+++..+| .|..|+.. ++.+..+......+.+++|--
T Consensus 192 ~d~~~----g~~~~~--~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 192 LDPAT----GPIGGR--RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred cCccc----CccCCc--ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 75300 000000 00000011122344678888888775554444 89999988 888877776655666777753
Q ss_pred CC-CcEEEEEeC
Q 021247 211 VD-PRVLFSASD 221 (315)
Q Consensus 211 ~~-~~~l~s~~~ 221 (315)
.+ ..+++++..
T Consensus 265 ~~~~~L~iTs~~ 276 (307)
T COG3386 265 PDLNTLYITSAR 276 (307)
T ss_pred CCcCEEEEEecC
Confidence 22 334444443
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.007 Score=56.53 Aligned_cols=101 Identities=23% Similarity=0.355 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCcEEEEEccccee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247 169 DGRRIACGSMDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247 (315)
Q Consensus 169 ~~~~l~~~s~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 247 (315)
.+..++.|+..|.+...|+.++-. ...-..-..+|.+++|+. ++++++.|-.+|.|.+||+..+++.+.+..|..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456788999999999999865421 111222357999999986 788999999999999999999888887776654443
Q ss_pred ---EEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 248 ---SVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 248 ---~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
.+.+..++..+.++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3445556668888888886 5654
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0041 Score=58.02 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=73.1
Q ss_pred CcEEEEEeCCCeEEEEeCCCC-eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEE
Q 021247 213 PRVLFSASDDTHVHMYDAEGK-SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV 291 (315)
Q Consensus 213 ~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 291 (315)
.-.++.|++.|++...|..+. .....-..-.+++.+++|+.+|+.++.|-.+|.|.+||...++.++.+..|..+.+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 345788888899988887653 1111112235789999999999999999999999999999999888888777766655
Q ss_pred EEe---eCCCEEEEEeCCCcEEEee
Q 021247 292 SFR---PLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 292 ~~s---~~~~~l~s~~~d~~i~i~~ 313 (315)
-++ .++..++++...|. +|+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEE
Confidence 443 34556777777776 454
No 389
>PHA03098 kelch-like protein; Provisional
Probab=96.54 E-value=0.37 Score=43.81 Aligned_cols=184 Identities=13% Similarity=0.148 Sum_probs=84.7
Q ss_pred CCCCEEEEeeCCC------eEEEEECCCCceeEEeeCC-c-ccEEEEEECCCCCeEEEEecCC-----CeEEEEecCCcc
Q 021247 70 PSGIIAASASLDS------FVRVFDVDTNASIATLEAS-P-SEVWQMQFDPKGTTLAVAGGGS-----ASVKLWDTATWN 136 (315)
Q Consensus 70 ~~g~~l~s~~~d~------~i~~w~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~ 136 (315)
.++.+++.||.++ .+..+|..+++-...-... + .....+.+ +..+++.||.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3455666666543 4677787765542211111 0 11112222 23455666654 346677876654
Q ss_pred eeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC------CcEEEEEcccceeeeee--cCCccceEEEEE
Q 021247 137 LIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD------GTISVFDVTRAKFLHHL--EGHFMPVRSLVY 208 (315)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d------g~i~i~d~~~~~~~~~~--~~~~~~v~~~~~ 208 (315)
....-..+.+ ...+ +++. -+++..+.|+.+ ..+..||+.+++....- ...... .++..
T Consensus 370 W~~~~~lp~~-------r~~~-----~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~ 435 (534)
T PHA03098 370 WREEPPLIFP-------RYNP-----CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY 435 (534)
T ss_pred eeeCCCcCcC-------Cccc-----eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE
Confidence 4321111110 1111 1121 245666666632 35888998876653321 111111 11222
Q ss_pred cCCCCcEEEEEeCC--------CeEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecC
Q 021247 209 SPVDPRVLFSASDD--------THVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLN 273 (315)
Q Consensus 209 ~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~ 273 (315)
. ++.+++.||.+ ..+.+||..+.+-.. .+.........+. .++++++.||.+ ..|.++|..
T Consensus 436 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 436 H--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred E--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCC
Confidence 2 45666766642 237888887653221 1111011111122 256677777654 457778776
Q ss_pred c
Q 021247 274 M 274 (315)
Q Consensus 274 ~ 274 (315)
+
T Consensus 512 ~ 512 (534)
T PHA03098 512 T 512 (534)
T ss_pred C
Confidence 5
No 390
>PHA03098 kelch-like protein; Provisional
Probab=96.53 E-value=0.28 Score=44.51 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=66.5
Q ss_pred CCCEEEEecCC-----CcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCee
Q 021247 169 DGRRIACGSMD-----GTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDD------THVHMYDAEGKSL 235 (315)
Q Consensus 169 ~~~~l~~~s~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~ 235 (315)
+++.++.|+.+ ..+..||+.+++.... +...... .++.. .++++++.||.+ ..+..||..+.+-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 46667777755 2477888877654321 1111111 11121 245677777632 3578888875432
Q ss_pred EE--EeecccccEEEEEEcCCCCeEEEEeCCC--------cEEEEecCccc--eehcccccccceEEEEEeeCCCEEEEE
Q 021247 236 VT--AMSGHASWVLSVDASPDGAAITTGSSDR--------TVKLWDLNMRA--AMQSMTNHTDQVWGVSFRPLGGRVVSV 303 (315)
Q Consensus 236 ~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~ 303 (315)
.. .+....... + +...++.+.+.||.+. .+.+||..+.+ .+..+.........+. .+++.++.|
T Consensus 419 ~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~G 494 (534)
T PHA03098 419 SKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVG 494 (534)
T ss_pred eecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEc
Confidence 11 111000001 1 1223556667776532 37788876532 2222221111112222 256666667
Q ss_pred eCC-----CcEEEeec
Q 021247 304 SDD-----KSISLYEY 314 (315)
Q Consensus 304 ~~d-----~~i~i~~~ 314 (315)
|.+ ..|.+||.
T Consensus 495 G~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 495 GDKYEYYINEIEVYDD 510 (534)
T ss_pred CCcCCcccceeEEEeC
Confidence 654 36777764
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.50 E-value=0.33 Score=38.99 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=112.9
Q ss_pred ceEEEEeCCCCCEEEEeeCCC--eEEEEECCCCceeEEeeCCcc-cEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247 62 GVVSVAAHPSGIIAASASLDS--FVRVFDVDTNASIATLEASPS-EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI 138 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 138 (315)
....+.+..+|.++-+.+.-| .|+.+|+.+++.......... --..+... +..+..-.-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 355677777888888887776 699999999987665543321 12233333 2234444567889999999999888
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC--Ccc---ceEEEEEcCCCC
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG--HFM---PVRSLVYSPVDP 213 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~ 213 (315)
.++..+.. -..++ .+++.|+.+.....++++|..+.+....+.- ... .++.+.+- ++
T Consensus 124 ~~~~y~~E--------------GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G 185 (264)
T PF05096_consen 124 GTFPYPGE--------------GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NG 185 (264)
T ss_dssp EEEE-SSS----------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TT
T ss_pred EEEecCCc--------------ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cC
Confidence 88866421 13455 4567777666677899999887766555432 222 33455554 56
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEEEeec------------c---cccEEEEEEcCCCCeEEEEe
Q 021247 214 RVLFSASDDTHVHMYDAEGKSLVTAMSG------------H---ASWVLSVDASPDGAAITTGS 262 (315)
Q Consensus 214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------~---~~~i~~~~~~~~~~~l~s~~ 262 (315)
.+.+-.-....|...|..++.++..+.- + ..-.+.++++|....|...|
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6666666677888899999988775531 1 24478999998765544444
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.48 E-value=0.34 Score=38.95 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=107.2
Q ss_pred EEEEeeCCC--cEEEEcCCCCcceeeccc-cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEE
Q 021247 32 LLLTGSLDE--TVKLWRPDDMQLERTNTG-HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQM 108 (315)
Q Consensus 32 ~l~sgs~d~--~v~~w~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~ 108 (315)
++-+.+.-| .|+.+|+.+++..+...- ...---.+... .+.+..-.-.++...+||.++.+.+.++.. +.+-|.+
T Consensus 58 LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGL 135 (264)
T PF05096_consen 58 LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGL 135 (264)
T ss_dssp EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EE
T ss_pred EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEE
Confidence 556666555 688899988876543211 11111122222 234444567788999999999888887764 4678888
Q ss_pred EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
+. ++..++. +.+...+..+|..+.+....+.+.... ..-..++.+.|- +|...|-.-....|...|..
T Consensus 136 t~--dg~~Li~-SDGS~~L~~~dP~~f~~~~~i~V~~~g--------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~ 203 (264)
T PF05096_consen 136 TS--DGKRLIM-SDGSSRLYFLDPETFKEVRTIQVTDNG--------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE 203 (264)
T ss_dssp EE--CSSCEEE-E-SSSEEEEE-TTT-SEEEEEE-EETT--------EE---EEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred Ec--CCCEEEE-ECCccceEEECCcccceEEEEEEEECC--------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC
Confidence 85 3455554 455679999999888877776553211 112236667775 57666767777788899999
Q ss_pred cceeeeeec-----------C-C---ccceEEEEEcCCCCcEEEEEeC
Q 021247 189 RAKFLHHLE-----------G-H---FMPVRSLVYSPVDPRVLFSASD 221 (315)
Q Consensus 189 ~~~~~~~~~-----------~-~---~~~v~~~~~~~~~~~~l~s~~~ 221 (315)
+|+....+. . + ....+.|++.|..++++++|=.
T Consensus 204 tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 204 TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 988765441 0 1 2456899999988888888743
No 393
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.28 E-value=0.18 Score=43.90 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=87.1
Q ss_pred ECCCCCEEE-EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCC------CcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247 166 WSPDGRRIA-CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD------PRVLFSASDDTHVHMYDAEGKSLVTA 238 (315)
Q Consensus 166 ~~~~~~~l~-~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~~wd~~~~~~~~~ 238 (315)
...+..+++ .|.....++-.|++.|+.+..+..|... -+.|.|.. +..-+.|-.+..|.-.|.+-.-..-.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 344555554 5667778999999999999998877654 45566632 12234455566666667653211111
Q ss_pred eecccccEEEEEEcC----CCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247 239 MSGHASWVLSVDASP----DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 239 ~~~~~~~i~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
........+.-.|+. ...++|.|+..|.|++||.-..+....+++-.+.|..+..+.+|.+|++.+.
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 111122222223333 3458999999999999986433333345677789999999999999887765
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.17 E-value=0.025 Score=32.15 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=28.1
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 243 ASWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 243 ~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
...|..++|+|...++|.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4558899999999999999999999999984
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.88 E-value=0.63 Score=36.45 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=86.4
Q ss_pred cceEEEEeCCCCCEEEEeeCC---------CeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEe
Q 021247 61 LGVVSVAAHPSGIIAASASLD---------SFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD 131 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d---------~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d 131 (315)
...+.-..+|+|++++-.=.| |.++.|-..- .+..+...-.--..++|+.+.+.+.+.-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345566788999886522111 2344443321 11222222223356788877777777777777887777
Q ss_pred --cCCccee---eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEE
Q 021247 132 --TATWNLI---ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSL 206 (315)
Q Consensus 132 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 206 (315)
..++... ..+.+....... ....-.++...+|++.+++-+.++|...|+.+++.+..+.-....|+++
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 5554332 112222111110 0112356667789999999999999999999999999988888889999
Q ss_pred EEcC
Q 021247 207 VYSP 210 (315)
Q Consensus 207 ~~~~ 210 (315)
+|.-
T Consensus 260 cFgG 263 (310)
T KOG4499|consen 260 CFGG 263 (310)
T ss_pred EecC
Confidence 9964
No 396
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.80 E-value=1.2 Score=38.96 Aligned_cols=200 Identities=13% Similarity=0.102 Sum_probs=94.6
Q ss_pred cEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeC----CcccEEEE-----EEC
Q 021247 41 TVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEA----SPSEVWQM-----QFD 111 (315)
Q Consensus 41 ~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~----~~~~v~~~-----~~~ 111 (315)
.|++|+.....+....-.+ +.+..+.|+.+. .|+....||.++++|+.... .+.. ....|... .+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccC
Confidence 4777776544433322122 688999998865 45567789999999986443 1111 11112111 222
Q ss_pred CCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccce
Q 021247 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 191 (315)
Q Consensus 112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~ 191 (315)
.+| .++++ .++.+.+..-........ ..+........ ............++.+....+....++.+.+.+-...+
T Consensus 137 ~~G-ivvLt--~~~~~~~v~n~~~~~~~~-~~~~~p~~~~~-~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 137 KNG-IVVLT--GNNRFYVVNNIDEPVKLR-RLPEIPGLWTK-FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCC-EEEEC--CCCeEEEEeCccccchhh-ccccCCCcccc-cccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 222 22232 334443332221110100 00000000000 00000000012334444444444455566644432211
Q ss_pred eeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeecc-cccEEEEEEcCCC
Q 021247 192 FLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGH-ASWVLSVDASPDG 255 (315)
Q Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~ 255 (315)
. +. ..+++..++.|| ++++++.-..+|.+.+....-.+....+... ...+..+.|..+.
T Consensus 212 ~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 1 11 235799999999 6678888888899988876544444444322 2344566665543
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.84 Score=37.07 Aligned_cols=145 Identities=12% Similarity=0.233 Sum_probs=88.9
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCC-ccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGH-FMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV--- 236 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--- 236 (315)
+.++.|+|+.+.|++..+...-.++=-..|+.+..+.-. ....-.+.+.. ++++.++-=.++.+.++.......+
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~ 166 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISA 166 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEec
Confidence 889999999999888777776666644567776665321 11123344443 4555556566777877765433111
Q ss_pred ----EEe--ecc-cccEEEEEEcCCCCeEEEEeCCCcEEEEecCccce---ehcccccc-------cceEEEEEeeCCCE
Q 021247 237 ----TAM--SGH-ASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAA---MQSMTNHT-------DQVWGVSFRPLGGR 299 (315)
Q Consensus 237 ----~~~--~~~-~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~-------~~v~~~~~s~~~~~ 299 (315)
-.+ ..+ +...-.++|+|..+.|..+-.-.-+.||....... .+....++ ..+.++.|.+..+.
T Consensus 167 ~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~ 246 (316)
T COG3204 167 KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNS 246 (316)
T ss_pred cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCc
Confidence 111 122 56678899999988888888888888887764331 11112222 24667788876555
Q ss_pred EEEEeCC
Q 021247 300 VVSVSDD 306 (315)
Q Consensus 300 l~s~~~d 306 (315)
|+..|++
T Consensus 247 LLVLS~E 253 (316)
T COG3204 247 LLVLSDE 253 (316)
T ss_pred EEEEecC
Confidence 5554443
No 398
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.76 E-value=0.7 Score=39.76 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=75.7
Q ss_pred eEEEEECCCCCEEEEec-----------CCC-cEEEEEccc--cee--eeeecCCccceEEEEEcCCCCcEEEEEeCCCe
Q 021247 161 VLSVAWSPDGRRIACGS-----------MDG-TISVFDVTR--AKF--LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTH 224 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 224 (315)
...|+|.++|+.+++-. ..+ .|.+++-.. ++. ...+.........+++.+ ++ ++++ ... .
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~-~ 91 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP-D 91 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC-e
Confidence 46899999999877753 223 677776432 222 122222233457788876 44 5554 333 3
Q ss_pred EEEE-eCCC-------Ce-eEEEeec----ccccEEEEEEcCCCCeEEEEeCC-------------------CcEEEEec
Q 021247 225 VHMY-DAEG-------KS-LVTAMSG----HASWVLSVDASPDGAAITTGSSD-------------------RTVKLWDL 272 (315)
Q Consensus 225 i~~w-d~~~-------~~-~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d-------------------~~i~iwd~ 272 (315)
|..| |... .+ ++..+.. +......+.+.|+|.+.++-+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 5444 4432 11 2222222 12346789999999876655521 33444444
Q ss_pred CccceehcccccccceEEEEEeeCCCEEEEEeC
Q 021247 273 NMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSD 305 (315)
Q Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 305 (315)
..++ ++.+..--...+.++|+|+|..+++-..
T Consensus 172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCe-EEEEecCcCCCccceECCCCCEEEEccC
Confidence 4332 2233222345678999999987766443
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.66 E-value=0.083 Score=29.15 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=26.7
Q ss_pred cceEEEEEcCCCC--cEEEEEeCCCeEEEEeCCC
Q 021247 201 MPVRSLVYSPVDP--RVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 201 ~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~ 232 (315)
+.+++++|+|... .+|+-+-.-+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998655 6888888889999999985
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=95.65 E-value=1.5 Score=39.20 Aligned_cols=177 Identities=7% Similarity=0.016 Sum_probs=83.0
Q ss_pred CeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC--CcEEEEEc
Q 021247 115 TTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD--GTISVFDV 187 (315)
Q Consensus 115 ~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d--g~i~i~d~ 187 (315)
+.+++.||.+ .++..||.++.+....-..+.+ ......+. -++...+.|+.+ ..+..||.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-----------r~~~~~v~--~~~~iYviGG~~~~~sve~ydp 338 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-----------RLYASGVP--ANNKLYVVGGLPNPTSVERWFH 338 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----------hhcceEEE--ECCEEEEECCcCCCCceEEEEC
Confidence 4566666643 3566788776544332211111 00111222 356666777753 35888888
Q ss_pred ccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEE--EeecccccEEEEEEcCCCCeEEE
Q 021247 188 TRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT---HVHMYDAEGKSLVT--AMSGHASWVLSVDASPDGAAITT 260 (315)
Q Consensus 188 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s 260 (315)
.+++.... +....... ++.. .++++.+.||.++ .+..||.++.+-.. .+....... ++ ..-++++.+.
T Consensus 339 ~~n~W~~~~~l~~~r~~~-~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~ 413 (480)
T PHA02790 339 GDAAWVNMPSLLKPRCNP-AVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLV 413 (480)
T ss_pred CCCeEEECCCCCCCCccc-EEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEE
Confidence 76654322 21111111 1111 2567777777543 46678876543221 111000111 11 2235666666
Q ss_pred EeCCCcEEEEecCcc--ceehcccccccceEEEEEeeCCCEEEEEeCC-----CcEEEeec
Q 021247 261 GSSDRTVKLWDLNMR--AAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD-----KSISLYEY 314 (315)
Q Consensus 261 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~i~~~ 314 (315)
|+ .+.+||..+. ..+..+.........+. .+|+..+.||.+ .++..||.
T Consensus 414 GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 414 GR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence 64 4677877543 23333322222222222 355566777754 35667764
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.58 E-value=0.33 Score=43.16 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=76.0
Q ss_pred ccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-----CCcceeeccccc---cc--eEEEEeCCCCCEEEEeeCCCe
Q 021247 14 EESVWAVTWVPATETRPALLLTGSLDETVKLWRPD-----DMQLERTNTGHC---LG--VVSVAAHPSGIIAASASLDSF 83 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-----~~~~~~~~~~h~---~~--v~~~~~~~~g~~l~s~~~d~~ 83 (315)
=+.|.++.|.|.......-+++-..-..|.+|... ..+.......+- .+ ...+-|||...+|+.-..+..
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 35799999999765444345555677899999753 222222111111 11 234668998877765554444
Q ss_pred EEEEECCCCceeEEee-CCcccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247 84 VRVFDVDTNASIATLE-ASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134 (315)
Q Consensus 84 i~~w~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 134 (315)
--+.++.........+ ...+.|.+.+|.++|+.++++-+..-.-++||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 4455555443322221 34567999999999999988877777889998754
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.11 Score=49.40 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=88.5
Q ss_pred eEEEEECCCCCEEEE--ecCCCcEEEEEcccceeee-----eecCC------ccceEEEEEcCCCCcEEEEEeCCCeEEE
Q 021247 161 VLSVAWSPDGRRIAC--GSMDGTISVFDVTRAKFLH-----HLEGH------FMPVRSLVYSPVDPRVLFSASDDTHVHM 227 (315)
Q Consensus 161 i~~~~~~~~~~~l~~--~s~dg~i~i~d~~~~~~~~-----~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 227 (315)
+..+...+|+...++ .+++-.|..||+++...-. -+..| -.-..++.|.|.-+...+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 556666777665544 3344478999986432211 11111 1123567788866666777788998888
Q ss_pred EeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc--ceehccccc-ccceEEEEEeeCCCEEEEEe
Q 021247 228 YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR--AAMQSMTNH-TDQVWGVSFRPLGGRVVSVS 304 (315)
Q Consensus 228 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~ 304 (315)
.-+........--.-....++++|+|.|..++.|-.+|++.-|..... ..+..-... ...|.+|.|-....+++..+
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 765533222111223455789999999999999999999988865422 222222221 25788998887666666543
No 403
>PHA02790 Kelch-like protein; Provisional
Probab=95.45 E-value=1.8 Score=38.75 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=81.3
Q ss_pred CCCEEEEeeCCC-----eEEEEECCCCceeEEeeCCc--ccEEEEEECCCCCeEEEEecCC--CeEEEEecCCcceeeee
Q 021247 71 SGIIAASASLDS-----FVRVFDVDTNASIATLEASP--SEVWQMQFDPKGTTLAVAGGGS--ASVKLWDTATWNLIATL 141 (315)
Q Consensus 71 ~g~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~d--~~i~~~d~~~~~~~~~~ 141 (315)
++.+++.||.++ ++..||..++.....-.... .....+.. ++.+++.||.+ ..+..||..+.+....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~---~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA---NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE---CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 46677777654322111111 11112222 34566666643 35777887654333211
Q ss_pred cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC---cEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEE
Q 021247 142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG---TISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVL 216 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l 216 (315)
.++.+ ......+. -+|+..+.|+.++ .+..||.++.+.... +.........+. .++.+.
T Consensus 348 ~l~~~-----------r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~---~~~~IY 411 (480)
T PHA02790 348 SLLKP-----------RCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV---FGRRLF 411 (480)
T ss_pred CCCCC-----------CcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE---ECCEEE
Confidence 11110 00111222 2566667776543 477899887765432 111111111112 245566
Q ss_pred EEEeCCCeEEEEeCCCCee--EEEeecccccEEEEEEcCCCCeEEEEeCC-----CcEEEEecC
Q 021247 217 FSASDDTHVHMYDAEGKSL--VTAMSGHASWVLSVDASPDGAAITTGSSD-----RTVKLWDLN 273 (315)
Q Consensus 217 ~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~i~iwd~~ 273 (315)
+.|+ ...+||.++.+- +..+....... +++ .-++++.+.||.+ ..|..||..
T Consensus 412 v~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 412 LVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence 6664 466788765432 22221111111 122 2256677777754 234555544
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.43 E-value=0.81 Score=37.03 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=62.7
Q ss_pred ceEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEe-cCccce-
Q 021247 202 PVRSLVYSPVDPRVLFSA--SDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWD-LNMRAA- 277 (315)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~- 277 (315)
.+.+.++++++..+.+.. .....++++........ .+.+ ..+..-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 567888998655554444 23445666654432221 1122 2567778999987776666677777774 222221
Q ss_pred -ehc-ccccccceEEEEEeeCCCEEEEEe---CCCcEEE
Q 021247 278 -MQS-MTNHTDQVWGVSFRPLGGRVVSVS---DDKSISL 311 (315)
Q Consensus 278 -~~~-~~~~~~~v~~~~~s~~~~~l~s~~---~d~~i~i 311 (315)
... ...-...|.++.+||||.+++... .++.|.|
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence 111 111112899999999999987655 3455544
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=1.2 Score=36.30 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=105.5
Q ss_pred ccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCc-ccEEEEEECCCCCeEEEEecCCCeEEEEecCC
Q 021247 56 NTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASP-SEVWQMQFDPKGTTLAVAGGGSASVKLWDTAT 134 (315)
Q Consensus 56 ~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 134 (315)
+.|-...+.++.++|+.+.|.+......--|+=-..|+.+.++.... .....+.|.-. +.++++--.++++.++-+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcC
Confidence 34555569999999999999988888887787777788777654321 11223444433 34556666677777776554
Q ss_pred cceeeee---cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee---eeeecCC-------cc
Q 021247 135 WNLIATL---SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF---LHHLEGH-------FM 201 (315)
Q Consensus 135 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~---~~~~~~~-------~~ 201 (315)
....... .++... ....+.....++|.|..+.|...-+..-+.||....... ......+ -.
T Consensus 160 ~t~~~~~~~~~i~L~~------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 160 DTTVISAKVQKIPLGT------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred CccEEeccceEEeccc------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 3221111 111110 001133467999999999888887777777776543221 1111111 12
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247 202 PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK 233 (315)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 233 (315)
.+.++.|.+..+.+|+-+..++.+...|..+.
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 35567788877788888888888888887765
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.28 E-value=1.8 Score=37.54 Aligned_cols=222 Identities=12% Similarity=0.116 Sum_probs=97.5
Q ss_pred CCCEEEEee-CCCeEEEEECCCC----ceeEEeeC---Cc----ccEEEEEECCCCCeEEEEec------CCCeEEEEec
Q 021247 71 SGIIAASAS-LDSFVRVFDVDTN----ASIATLEA---SP----SEVWQMQFDPKGTTLAVAGG------GSASVKLWDT 132 (315)
Q Consensus 71 ~g~~l~s~~-~d~~i~~w~~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~~~~~~~------~d~~i~~~d~ 132 (315)
+.++|+..+ ..+.|++.|+.+. +..++++. .. ..--.+..-|+|+.+ +++- .-|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im-IS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM-ISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE-EEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE-EEeccCCCCCCCCcEEEEcC
Confidence 345666655 6688999999853 23334432 10 111223334666644 4432 2356888888
Q ss_pred CCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec--------------------CCCcEEEEEccccee
Q 021247 133 ATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS--------------------MDGTISVFDVTRAKF 192 (315)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s--------------------~dg~i~i~d~~~~~~ 192 (315)
.+.+....+..++... .+-..+-|.|..+.++++. ...++.+||+.+.+.
T Consensus 165 ~tf~v~g~We~~~~~~----------~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQ----------PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp TT--EEEE--SB-TT----------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred ccccccceeccCCCCC----------CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 8877777665432211 1123444455444444432 356799999999999
Q ss_pred eeeecCCc--cceEEEEEcC--CCCcEEEEEeCCCeEEEEeC-CCCe----eEEEeecc-----------------cccE
Q 021247 193 LHHLEGHF--MPVRSLVYSP--VDPRVLFSASDDTHVHMYDA-EGKS----LVTAMSGH-----------------ASWV 246 (315)
Q Consensus 193 ~~~~~~~~--~~v~~~~~~~--~~~~~l~s~~~d~~i~~wd~-~~~~----~~~~~~~~-----------------~~~i 246 (315)
++.+.-.. ..+..+.|.. ....-++.+....+|..|-. +.++ .+..+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88876432 2345667753 33334555555666665543 3332 11111110 2457
Q ss_pred EEEEEcCCCCeE-EEEeCCCcEEEEecCcc-c--eehcc--------------cc--cccceEEEEEeeCCCEEEEE
Q 021247 247 LSVDASPDGAAI-TTGSSDRTVKLWDLNMR-A--AMQSM--------------TN--HTDQVWGVSFRPLGGRVVSV 303 (315)
Q Consensus 247 ~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~-~--~~~~~--------------~~--~~~~v~~~~~s~~~~~l~s~ 303 (315)
+++.+|.|.++| +++-.+|.||.||+..- . ...++ .+ -.+...-+..|.||++|...
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 899999999987 55556899999999642 1 11111 00 01234557888899888543
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.26 E-value=1.4 Score=38.08 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=53.9
Q ss_pred CCeEEEEECCCCceeEEeeCCcc--cEEEEEE--CCCCCeEEEEecCCCeEEEEec-CCcce--eeeecCCCCC--C-CC
Q 021247 81 DSFVRVFDVDTNASIATLEASPS--EVWQMQF--DPKGTTLAVAGGGSASVKLWDT-ATWNL--IATLSIPRPE--G-LK 150 (315)
Q Consensus 81 d~~i~~w~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~~~~~~~d~~i~~~d~-~~~~~--~~~~~~~~~~--~-~~ 150 (315)
-.++++||+.+.+.++++..... ....++| +|...+=++.+.-..+|..|-- ..++. ...+.++..+ + ..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 45699999999999999987653 3455665 4555554555444555555432 33332 2223332211 0 00
Q ss_pred CCcc---CCCCcceEEEEECCCCCEEE-EecCCCcEEEEEccc
Q 021247 151 PTDK---SSSKKFVLSVAWSPDGRRIA-CGSMDGTISVFDVTR 189 (315)
Q Consensus 151 ~~~~---~~~~~~i~~~~~~~~~~~l~-~~s~dg~i~i~d~~~ 189 (315)
+... ..-...|+.+..|.|.++|. ++-..|.++.||+..
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0000 00123478999999999885 566899999999863
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.17 E-value=1.5 Score=36.01 Aligned_cols=233 Identities=14% Similarity=0.185 Sum_probs=125.8
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCC-------CCcceeeccc-----cccceEEEEeCCCC-----------
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPD-------DMQLERTNTG-----HCLGVVSVAAHPSG----------- 72 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~-------~~~~~~~~~~-----h~~~v~~~~~~~~g----------- 72 (315)
.-|+++++|.+. +-++....+...+|+.+ ...+...++. .....+-+.|+...
T Consensus 24 N~WGia~~p~~~----~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGP----FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCCC----EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 568999999664 56777778899999875 1122223331 11234555554321
Q ss_pred -CEEEEeeCCCeEEEEECCCCce-----eEEeeCC-cccEE-EEEEC--CCCCeEEEEecCCCeEEEEecCCccee--ee
Q 021247 73 -IIAASASLDSFVRVFDVDTNAS-----IATLEAS-PSEVW-QMQFD--PKGTTLAVAGGGSASVKLWDTATWNLI--AT 140 (315)
Q Consensus 73 -~~l~s~~~d~~i~~w~~~~~~~-----~~~~~~~-~~~v~-~~~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~--~~ 140 (315)
..++-+++||+|.-|...-+.. +..++.. ...|+ .+++- ..+..++++-=..++|.++|..-.+.. ..
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 2356789999999999643322 2223322 23332 44443 335666665556789999986422110 00
Q ss_pred ecCC-CCCCCCCCc--cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeec--CCccceEEEEEcC-----
Q 021247 141 LSIP-RPEGLKPTD--KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLE--GHFMPVRSLVYSP----- 210 (315)
Q Consensus 141 ~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~----- 210 (315)
+.-+ -+.+..|.. .....-+|+-..-.++.+.=+.|..-|.|-+||+. ++.++.+. +.-...+.++..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 1000 011111100 01111223222334444444555566789999974 55555542 2334456666544
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccc------ccEEEEEEcC
Q 021247 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHA------SWVLSVDASP 253 (315)
Q Consensus 211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~i~~~~~~~ 253 (315)
..+.+|+---.||+|..||..++..+..+.... ...+.|.|-.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 235677777789999999998887776665432 2345566644
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.97 E-value=0.71 Score=40.44 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=86.8
Q ss_pred CCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-------CEEEEecCCCcEE
Q 021247 111 DPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-------RRIACGSMDGTIS 183 (315)
Q Consensus 111 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~s~dg~i~ 183 (315)
+.+.+.++..|+....+.-.|+..++.+..+..... + -+.|.|.. ..-++|-.+..|.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--------------v-vVqy~p~~kf~qmt~eqtlvGlS~~svF 540 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--------------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVF 540 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCc--------------c-eeecCCchhHHhcCccceEEeecccceE
Confidence 334455666666667788888888888877755332 1 34444432 1233444556666
Q ss_pred EEEccc-ceeeeeecCCccceEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEE
Q 021247 184 VFDVTR-AKFLHHLEGHFMPVRSLVYSP---VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAIT 259 (315)
Q Consensus 184 i~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (315)
-.|.+- +..+.... ...-.+.-.|+. ....+++.++..|-|++||.-+......+.+-...|..+..+.+|.+++
T Consensus 541 rIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~il 619 (776)
T COG5167 541 RIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHIL 619 (776)
T ss_pred EecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEE
Confidence 667642 21111110 111111112221 2456899999999999999765555555666677899999999999877
Q ss_pred EEeCCCcEEEEecC
Q 021247 260 TGSSDRTVKLWDLN 273 (315)
Q Consensus 260 s~~~d~~i~iwd~~ 273 (315)
+.|. ..+.+-|++
T Consensus 620 aTCk-~yllL~d~~ 632 (776)
T COG5167 620 ATCK-NYLLLTDVP 632 (776)
T ss_pred Eeec-ceEEEEecc
Confidence 6654 456666653
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.93 E-value=1.8 Score=35.89 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=80.9
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCCeeEEE
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD-AEGKSLVTA 238 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~ 238 (315)
.+..+.-+++|+++++++....+.-||.........-+.....+..|.|.|+ +.+.+ ....+.|+.=+ ....+....
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-~~lw~-~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-GNLWM-LARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-S-EEE-EETTTEEEEEE-TTEEEEE--
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC-CCEEE-EeCCcEEEEccCCCCcccccc
Confidence 4778888999999999977777778886544344444445678999999984 54444 44778777766 222211111
Q ss_pred -ee---cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcc---cccccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 239 -MS---GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM---TNHTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 239 -~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
.. ...-.+.++++.++++..++|+. |.+ +...+.++..+.. ..-...+..+.|.+. ..-+..+.+|.|.-
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~~gf~lG~~G~ll~ 300 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP-DKGFVLGQDGVLLR 300 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET-TEEEEE-STTEEEE
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC-CceEEECCCcEEEE
Confidence 11 12233789999998887776654 443 3344445444332 223356888999865 56788888898876
Q ss_pred e
Q 021247 312 Y 312 (315)
Q Consensus 312 ~ 312 (315)
|
T Consensus 301 ~ 301 (302)
T PF14870_consen 301 Y 301 (302)
T ss_dssp E
T ss_pred e
Confidence 5
No 411
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.79 E-value=2.3 Score=36.37 Aligned_cols=194 Identities=19% Similarity=0.306 Sum_probs=107.8
Q ss_pred EeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeC----CCCCE--EEEee-CC---CeEEEEECCC
Q 021247 22 WVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAH----PSGII--AASAS-LD---SFVRVFDVDT 91 (315)
Q Consensus 22 ~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~----~~g~~--l~s~~-~d---~~i~~w~~~~ 91 (315)
|.+......++++.....+-+.+||++..++...-.+ .++.+..- -.|.. |+.++ .+ .+|++|.+..
T Consensus 60 Wvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 60 WVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp E--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred ecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence 5554444567899999999999999976555433223 22333221 13332 33333 22 4699998764
Q ss_pred C-ceeEEeeC-------CcccEEEEEE--CC-CCCeEEEEecCCCeEEEEecCC---c----ceeeeecCCCCCCCCCCc
Q 021247 92 N-ASIATLEA-------SPSEVWQMQF--DP-KGTTLAVAGGGSASVKLWDTAT---W----NLIATLSIPRPEGLKPTD 153 (315)
Q Consensus 92 ~-~~~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~~d~~i~~~d~~~---~----~~~~~~~~~~~~~~~~~~ 153 (315)
. ..+..+.. ....+..+++ +| ++...++....+|.+..|.+.. + ++++.+.++.
T Consensus 137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-------- 208 (381)
T PF02333_consen 137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-------- 208 (381)
T ss_dssp TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--------
T ss_pred CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------
Confidence 2 23333321 1234666664 44 4566677778889888887642 2 2344444322
Q ss_pred cCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc-----eeeeeecC--CccceEEEEEc--CCC-CcEEEEEeCCC
Q 021247 154 KSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA-----KFLHHLEG--HFMPVRSLVYS--PVD-PRVLFSASDDT 223 (315)
Q Consensus 154 ~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~-----~~~~~~~~--~~~~v~~~~~~--~~~-~~~l~s~~~d~ 223 (315)
.+..|+.......|..+-++--|.-|+.+.. +.+....+ ....|-.+++- +.+ +.+++|.-.++
T Consensus 209 ------Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 209 ------QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp -------EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred ------cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 3778899888889999999988888887522 22322222 23456666653 222 34556666788
Q ss_pred eEEEEeCCC
Q 021247 224 HVHMYDAEG 232 (315)
Q Consensus 224 ~i~~wd~~~ 232 (315)
+..+|+.+.
T Consensus 283 sf~Vy~r~~ 291 (381)
T PF02333_consen 283 SFAVYDREG 291 (381)
T ss_dssp EEEEEESST
T ss_pred eEEEEecCC
Confidence 999999875
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.77 E-value=1.1 Score=41.99 Aligned_cols=71 Identities=20% Similarity=0.377 Sum_probs=50.6
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc----------ce-e--hcc--------cccccceEEEEEeeC---CCE
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMR----------AA-M--QSM--------TNHTDQVWGVSFRPL---GGR 299 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------~~-~--~~~--------~~~~~~v~~~~~s~~---~~~ 299 (315)
..|..+.++|+|++|+..|..| |.|-.+..+ +. . +++ ..+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3578899999999998888766 445444321 10 0 000 133457889999997 589
Q ss_pred EEEEeCCCcEEEeecC
Q 021247 300 VVSVSDDKSISLYEYS 315 (315)
Q Consensus 300 l~s~~~d~~i~i~~~~ 315 (315)
|+.-..|+++|+||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999973
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.76 E-value=2.2 Score=36.07 Aligned_cols=237 Identities=18% Similarity=0.164 Sum_probs=112.9
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEECCCCce---eEEe----eCCcccEEEEEECCC---CCeEEEEecC------C--
Q 021247 63 VVSVAAHPSGIIAASASLDSFVRVFDVDTNAS---IATL----EASPSEVWQMQFDPK---GTTLAVAGGG------S-- 124 (315)
Q Consensus 63 v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~~~~~~~------d-- 124 (315)
..+|++.|+|.++++ ...|.|++++ ..+.. +..+ .........++++|+ +..++++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999988775 5599999999 33332 2222 122345789999994 3444444331 1
Q ss_pred CeEEEEecCCc--ce--eeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-------------cEEEEEc
Q 021247 125 ASVKLWDTATW--NL--IATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-------------TISVFDV 187 (315)
Q Consensus 125 ~~i~~~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-------------~i~i~d~ 187 (315)
..|.-|..... .. ...+....+. .......-..|.|.|+|.+.++.+..+ .|.-.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~------~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPD------TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-------CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred eeeEEEeccCCccccccceEEEEEeCC------CCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence 12222322221 00 0111000000 001223356799999997666543322 2322332
Q ss_pred cccee-------------eeee-cCCccceEEEEEcCCCCcEEEEE-eCCC--eEEEEeCC--------C------C---
Q 021247 188 TRAKF-------------LHHL-EGHFMPVRSLVYSPVDPRVLFSA-SDDT--HVHMYDAE--------G------K--- 233 (315)
Q Consensus 188 ~~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~l~s~-~~d~--~i~~wd~~--------~------~--- 233 (315)
. ++. ...+ .++. ....++|+|..+.++++- +.+. .|.+...- . +
T Consensus 156 d-G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 156 D-GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp T-SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred c-CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence 1 110 0000 1122 235788988545554432 2222 23322110 0 0
Q ss_pred ----------eeEEEeecccccEEEEEEcC-------CCCeEEEEeCCCcEEEEecCcccee---hc-ccccccceEEEE
Q 021247 234 ----------SLVTAMSGHASWVLSVDASP-------DGAAITTGSSDRTVKLWDLNMRAAM---QS-MTNHTDQVWGVS 292 (315)
Q Consensus 234 ----------~~~~~~~~~~~~i~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~~~---~~-~~~~~~~v~~~~ 292 (315)
..+..+. +...+..+.|-. .+.++++.-..+.|....++....+ .. +......+..++
T Consensus 234 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVA 312 (331)
T ss_dssp CTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEE
T ss_pred ccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEE
Confidence 0111222 234566666653 3456666666677887777643221 11 223344789999
Q ss_pred EeeCCCEEEEEeCCCcEE
Q 021247 293 FRPLGGRVVSVSDDKSIS 310 (315)
Q Consensus 293 ~s~~~~~l~s~~~d~~i~ 310 (315)
+.|||...++...+|+|.
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999888888889884
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=2 Score=34.89 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=60.4
Q ss_pred EEEEECCCCCeEEEEecCCC-eEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecC-----C
Q 021247 106 WQMQFDPKGTTLAVAGGGSA-SVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSM-----D 179 (315)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~-----d 179 (315)
-.+.++|.-..-++.+-.-| ...++|....+...++...+ ...+.-.=+|+|||.+|.+.-+ .
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-----------~RHfyGHGvfs~dG~~LYATEndfd~~r 139 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-----------GRHFYGHGVFSPDGRLLYATENDFDPNR 139 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-----------CceeecccccCCCCcEEEeecCCCCCCC
Confidence 35677776544333333333 35667777665554443221 1222334578999999987643 3
Q ss_pred CcEEEEEcccc-eeeeeecCCccceEEEEEcCCCCcEEEEE
Q 021247 180 GTISVFDVTRA-KFLHHLEGHFMPVRSLVYSPVDPRVLFSA 219 (315)
Q Consensus 180 g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 219 (315)
|.|-+||.+.+ +.+..+..|......+.+.+ +++.++.+
T Consensus 140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvva 179 (366)
T COG3490 140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVA 179 (366)
T ss_pred ceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEe
Confidence 67999998633 34556667766667777877 45555443
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.92 Score=43.63 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=80.4
Q ss_pred ceEEEEeCCCCCEEE--EeeCCCeEEEEECCCCceeE-----------EeeCCcccEEEEEECCCCCeEEEEecCCCeEE
Q 021247 62 GVVSVAAHPSGIIAA--SASLDSFVRVFDVDTNASIA-----------TLEASPSEVWQMQFDPKGTTLAVAGGGSASVK 128 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~--s~~~d~~i~~w~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 128 (315)
++..+...+|+...+ ..+.+..|..+|+++-.... +.........++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 444555566765444 44555689999987643211 11112234567889887655556667788777
Q ss_pred EEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccc--eeeeeecC-CccceEE
Q 021247 129 LWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA--KFLHHLEG-HFMPVRS 205 (315)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~--~~~~~~~~-~~~~v~~ 205 (315)
+.-+...... ........-.++++|+|.|+.++.|-..|++.-|-..-. +.+..... ....|.+
T Consensus 182 V~~~~~~~~~-------------v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 182 VKSTKQLAQN-------------VTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred hhhhhhhhhh-------------hcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeE
Confidence 7655321110 000111223789999999999999999999998875422 11111111 1356888
Q ss_pred EEEcC
Q 021247 206 LVYSP 210 (315)
Q Consensus 206 ~~~~~ 210 (315)
+.|-.
T Consensus 249 v~Wl~ 253 (1405)
T KOG3630|consen 249 VTWLS 253 (1405)
T ss_pred EEEec
Confidence 88864
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.48 E-value=2.1 Score=39.24 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=63.9
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEEEee-cccccEEEEEEc--CCCCeEEEEeCCCcEEEEecC---------ccceehc-
Q 021247 214 RVLFSASDDTHVHMYDAEGKSLVTAMS-GHASWVLSVDAS--PDGAAITTGSSDRTVKLWDLN---------MRAAMQS- 280 (315)
Q Consensus 214 ~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~- 280 (315)
+..+.-+....+.|||.+.+.+...-. ...+.|.+++|. |+++.+++.|-.+.|.++--. +...++.
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 344444455679999999876443322 446789999975 578899999999999998431 1122222
Q ss_pred -ccccc-cceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 281 -MTNHT-DQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 281 -~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+..|+ .+|.+..|.++|..+++.|. .+.||+
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 12333 57889999999977665543 344443
No 417
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=1.8 Score=33.43 Aligned_cols=170 Identities=12% Similarity=0.087 Sum_probs=87.3
Q ss_pred eEEEEecC--CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEE-EEecCCCcEEEEEccccee
Q 021247 116 TLAVAGGG--SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKF 192 (315)
Q Consensus 116 ~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~s~dg~i~i~d~~~~~~ 192 (315)
.++.+.+. ...|++||+.+++.+.+.+++.+.-+ -.. ++ .-++.+ .-.-.+|.-..+|..+.+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-gEG-------it-----~~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-GEG-------IT-----KLGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCcccc-ccc-------ee-----eccceEEEEEeccceeEEEChHHhhh
Confidence 44444443 45799999999998887776521100 000 11 112333 2334678888999887776
Q ss_pred eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE----eecc-cccEEEEEEcCCCCeEEEEeCCCcE
Q 021247 193 LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA----MSGH-ASWVLSVDASPDGAAITTGSSDRTV 267 (315)
Q Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i 267 (315)
+..+. .++.-+.+.. ++..|+.+....++..-|.++...... ..+. ...++.+.|- +|.+.|-.-.+..|
T Consensus 124 lg~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I 198 (262)
T COG3823 124 LGRFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRI 198 (262)
T ss_pred hcccc-cCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecce
Confidence 65443 1223344432 233355555555677667654332222 1211 1223334443 34444444444444
Q ss_pred EEEecCccceehcc------------cccccceEEEEEeeCCCEEEEE
Q 021247 268 KLWDLNMRAAMQSM------------TNHTDQVWGVSFRPLGGRVVSV 303 (315)
Q Consensus 268 ~iwd~~~~~~~~~~------------~~~~~~v~~~~~s~~~~~l~s~ 303 (315)
...+.++++.+..+ ..|.+-.+.+++.|++.++...
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 44455555443322 2344567889999998665443
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.37 E-value=4.8 Score=38.22 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=112.7
Q ss_pred CcEEEEeeCCCcEEEEcCCCCcceeecccccc--------ceEEEEeC----------------CCCCEEEEeeCCCeEE
Q 021247 30 PALLLTGSLDETVKLWRPDDMQLERTNTGHCL--------GVVSVAAH----------------PSGIIAASASLDSFVR 85 (315)
Q Consensus 30 ~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~--------~v~~~~~~----------------~~g~~l~s~~~d~~i~ 85 (315)
...++.++.++.|.-.|.++++....+.-... ....+.+. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 35788888889998899888776654321110 01111111 1334777788899999
Q ss_pred EEECCCCceeEEeeCCcccEE-------------EEEECC--CCCeEEEEec---------CCCeEEEEecCCcceeeee
Q 021247 86 VFDVDTNASIATLEASPSEVW-------------QMQFDP--KGTTLAVAGG---------GSASVKLWDTATWNLIATL 141 (315)
Q Consensus 86 ~w~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~~~~~~---------~d~~i~~~d~~~~~~~~~~ 141 (315)
-.|.++++....+... ..+. ...-.| .+..+++.+. -+|.|+-+|.++++++..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999887665321 1110 001111 1223333221 1588999999999999887
Q ss_pred cCCCCCCCCCCcc------CCCCcceEEEEECCCCCEEEEec------------------CCCcEEEEEcccceeeeeec
Q 021247 142 SIPRPEGLKPTDK------SSSKKFVLSVAWSPDGRRIACGS------------------MDGTISVFDVTRAKFLHHLE 197 (315)
Q Consensus 142 ~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~s------------------~dg~i~i~d~~~~~~~~~~~ 197 (315)
....+....+... .....+ ..++++++...++.+. ..+.|.-.|+++++..=.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W-~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSW-SVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCcc-CceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 6432221111000 000000 2345555544443322 23456677888887654443
Q ss_pred C-Ccc--------ceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCeeEE
Q 021247 198 G-HFM--------PVRSLVYSPVDP---RVLFSASDDTHVHMYDAEGKSLVT 237 (315)
Q Consensus 198 ~-~~~--------~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~ 237 (315)
. |.. ...-+.+...++ ..++.++.+|.+++.|.++++.+-
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 2 211 111122221133 378899999999999998876654
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.05 E-value=2 Score=40.31 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.8
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEEC
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDV 89 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~ 89 (315)
..|..+.++|+|.+++-.|..+ |-|-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 3578889999999999888766 444444
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.02 E-value=0.28 Score=27.11 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=25.2
Q ss_pred cEEEEEECCCCC--eEEEEecCCCeEEEEecCC
Q 021247 104 EVWQMQFDPKGT--TLAVAGGGSASVKLWDTAT 134 (315)
Q Consensus 104 ~v~~~~~~~~~~--~~~~~~~~d~~i~~~d~~~ 134 (315)
.+.+++|+|... .+++-....+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578899998655 6777777889999999984
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.02 E-value=3.1 Score=34.60 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=77.2
Q ss_pred cccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee
Q 021247 59 HCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI 138 (315)
Q Consensus 59 h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 138 (315)
-...+..+..+++|.+++.++.-....-|+.-...-..........+..|.|.|++...+++ ..+.|+.=+... ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~--~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPD--DG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TT--EE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCC--Cc
Confidence 34668888889999988877655556677754332333334456789999999998765543 667888776211 11
Q ss_pred eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecC---CccceEEEEEcCCCCcE
Q 021247 139 ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG---HFMPVRSLVYSPVDPRV 215 (315)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 215 (315)
..+..+.. + .......+..++|.+++...++|+.. . .+.....++..+.... -......+.|.+ +..
T Consensus 219 ~~w~~~~~----~--~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~--~~~ 288 (302)
T PF14870_consen 219 ETWSEPII----P--IKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVN--PDK 288 (302)
T ss_dssp EEE---B-----T--TSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEE--TTE
T ss_pred cccccccC----C--cccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcC--CCc
Confidence 11111000 0 01112237899999988777777554 3 2334445554444332 223467777764 235
Q ss_pred EEEEeCCCeEEEE
Q 021247 216 LFSASDDTHVHMY 228 (315)
Q Consensus 216 l~s~~~d~~i~~w 228 (315)
-+.-+.+|.|.-|
T Consensus 289 gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEE-STTEEEEE
T ss_pred eEEECCCcEEEEe
Confidence 5566677877655
No 422
>PRK10115 protease 2; Provisional
Probab=93.84 E-value=6 Score=37.30 Aligned_cols=194 Identities=13% Similarity=0.068 Sum_probs=92.7
Q ss_pred cEEEEEECCCCCeEEEEecCC----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCC
Q 021247 104 EVWQMQFDPKGTTLAVAGGGS----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMD 179 (315)
Q Consensus 104 ~v~~~~~~~~~~~~~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~d 179 (315)
.+..+.++|+++.++++...+ -+|++.|+.+++.+... . ... -..++|.+|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------i------~~~--~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------L------DNV--EPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------c------cCc--ceEEEEeeCCCEEEEEEec
Confidence 355678999999887765443 35778888765422110 0 000 1358999999877655432
Q ss_pred ------CcEEEEEcccce--eeeeecCCccceEEEEEcCCCCcEEE-EEe--CCCeEEEEeCC--CCeeEEEeecccccE
Q 021247 180 ------GTISVFDVTRAK--FLHHLEGHFMPVRSLVYSPVDPRVLF-SAS--DDTHVHMYDAE--GKSLVTAMSGHASWV 246 (315)
Q Consensus 180 ------g~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~--~d~~i~~wd~~--~~~~~~~~~~~~~~i 246 (315)
..|+.+++.++. -...+........-..+.+.++++++ ... .++.+.+++.. .+.....+.......
T Consensus 193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 272 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE 272 (686)
T ss_pred CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE
Confidence 357778887762 22222222222222223332444433 332 24578888842 222221121111222
Q ss_pred EEEEEcCCCCeEEEEeC-CCcEEEE--ecCccceehccccc-c-cceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 247 LSVDASPDGAAITTGSS-DRTVKLW--DLNMRAAMQSMTNH-T-DQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 247 ~~~~~~~~~~~l~s~~~-d~~i~iw--d~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
..+. +..+.+.+.... ...-++. ++........+..+ . ..+..+.+.. +..+++...++.-+++-+
T Consensus 273 ~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 273 YSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEE
Confidence 2222 222333222222 2233333 44321222333334 2 2577777763 344566777776666543
No 423
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.74 E-value=0.68 Score=36.50 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=47.3
Q ss_pred EcCCCCeEEEEeCCCcEEEEecCccceehc-------cc-------ccccceEEEEEeeCCCEEEEEeCCCcEEEeec
Q 021247 251 ASPDGAAITTGSSDRTVKLWDLNMRAAMQS-------MT-------NHTDQVWGVSFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 251 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
+..++.+|++-+.+|.+++||+..++.+.. +. .....|..+.++.+|.-|++.++ |....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence 345678899999999999999988765322 22 24567899999998887777765 67777764
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=93.72 E-value=3.8 Score=34.72 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=60.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEE-EeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcccee
Q 021247 200 FMPVRSLVYSPVDPRVLFSASDDTHVHM-YDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAM 278 (315)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~-wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 278 (315)
...+..+.+.| ++.+ +..+..|.+.. +|....+-......-...++++.+.++++.++.+ ..|.+++=..+.+..+
T Consensus 172 ~g~~~~i~~~~-~g~~-v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKY-VAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeE-EEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 44678888887 4444 44555555443 3322222222222334568889999998876654 5676653234444444
Q ss_pred hccccc----ccceEEEEEeeCCCEEEEEeCCCcEE
Q 021247 279 QSMTNH----TDQVWGVSFRPLGGRVVSVSDDKSIS 310 (315)
Q Consensus 279 ~~~~~~----~~~v~~~~~s~~~~~l~s~~~d~~i~ 310 (315)
+....+ ...+.++.+.|++. +..++.+|.+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence 432221 23577889999776 55555666554
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.64 E-value=2.2 Score=39.06 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=67.4
Q ss_pred CCCCCEEEEecCCCcEEEEEcccceeeeeec-CCccceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCC---------Cee
Q 021247 167 SPDGRRIACGSMDGTISVFDVTRAKFLHHLE-GHFMPVRSLVYSPV-DPRVLFSASDDTHVHMYDAEG---------KSL 235 (315)
Q Consensus 167 ~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~---------~~~ 235 (315)
+.-++..++.+....+.|||.+.+.....-. ....+|.++.|... +++.+++.|-.++|.+|-... ...
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3334444455555679999998777443322 44678999999643 677888889999999986421 112
Q ss_pred EEE--eeccc-ccEEEEEEcCCCCeEEEEeCCCcEEEEec
Q 021247 236 VTA--MSGHA-SWVLSVDASPDGAAITTGSSDRTVKLWDL 272 (315)
Q Consensus 236 ~~~--~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~ 272 (315)
+.. +..+. .+|.+..|-++|.+++.+ ++.+.|+|-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 222 23333 568889999999765543 456778764
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.44 E-value=1.4 Score=40.88 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCcEEEEEeCCCeEEEEeCCC-------C----ee-E-------EEeecccccEEEEEEc--CCCCeEEEEeCCCcEEEE
Q 021247 212 DPRVLFSASDDTHVHMYDAEG-------K----SL-V-------TAMSGHASWVLSVDAS--PDGAAITTGSSDRTVKLW 270 (315)
Q Consensus 212 ~~~~l~s~~~d~~i~~wd~~~-------~----~~-~-------~~~~~~~~~i~~~~~~--~~~~~l~s~~~d~~i~iw 270 (315)
+...|+.+.+||.|.+|..+. . .. . .....-...+++++++ ...+++|+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 557899999999999996521 0 00 0 0011123467899998 777888998888889988
Q ss_pred ecCcc--c-eehcccccccceEEEEEeeCC-----C-EEEEEeCCCcEEEeec
Q 021247 271 DLNMR--A-AMQSMTNHTDQVWGVSFRPLG-----G-RVVSVSDDKSISLYEY 314 (315)
Q Consensus 271 d~~~~--~-~~~~~~~~~~~v~~~~~s~~~-----~-~l~s~~~d~~i~i~~~ 314 (315)
-+... + .......|...|-+|+|-++. . +|++++-.|++.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65431 1 111111355678899998763 2 7889999999999886
No 427
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=1.3 Score=38.91 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEE-----ecC----cccee---hcc--------cccccceEEEEEeeCC---CEEE
Q 021247 245 WVLSVDASPDGAAITTGSSDRTVKLW-----DLN----MRAAM---QSM--------TNHTDQVWGVSFRPLG---GRVV 301 (315)
Q Consensus 245 ~i~~~~~~~~~~~l~s~~~d~~i~iw-----d~~----~~~~~---~~~--------~~~~~~v~~~~~s~~~---~~l~ 301 (315)
.|..+..++.|..++-+|.+|.+.+. .-+ .++.. +++ ....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46678889999999999999965443 211 12111 000 0111245678999985 6789
Q ss_pred EEeCCCcEEEeecC
Q 021247 302 SVSDDKSISLYEYS 315 (315)
Q Consensus 302 s~~~d~~i~i~~~~ 315 (315)
....|..||||+.+
T Consensus 185 iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLS 198 (741)
T ss_pred EEecCcEEEEEecC
Confidence 99999999999975
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.60 E-value=7.6 Score=35.03 Aligned_cols=119 Identities=13% Similarity=0.255 Sum_probs=72.7
Q ss_pred ccEEEEEECCCC----CeEEEEecCCCeEEEEecCC-----cceeee--ecCCCCCCCCCCccCCCCcceEEEEECCCCC
Q 021247 103 SEVWQMQFDPKG----TTLAVAGGGSASVKLWDTAT-----WNLIAT--LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR 171 (315)
Q Consensus 103 ~~v~~~~~~~~~----~~~~~~~~~d~~i~~~d~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 171 (315)
..|..+.|.|-+ ..+ ++-.....|.+|-+.. .+++.. ..+.++... .-.++.|+|...
T Consensus 57 EhV~GlsW~P~~~~~~paL-LAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pv----------LpQGCVWHPk~~ 125 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPAL-LAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPV----------LPQGCVWHPKKA 125 (671)
T ss_pred ceeeeeeecCcccCCCCce-EEEeccceEEEEEeccCccccccceeeeeeeccCCccc----------CCCcccccCCCc
Confidence 458899998853 223 3345677899998752 222221 222111111 124789999988
Q ss_pred EEEEecCCCcEEEEEcc--cceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 021247 172 RIACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGK 233 (315)
Q Consensus 172 ~l~~~s~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 233 (315)
.|++-+....=.+++++ ..+....+. ..+-|.+..|.+++.+++++.+..-+-++||-..+
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 88766554444556654 233344443 45678999999977677777777777889996543
No 429
>PRK10115 protease 2; Provisional
Probab=92.38 E-value=10 Score=35.85 Aligned_cols=195 Identities=11% Similarity=0.012 Sum_probs=97.4
Q ss_pred cceEEEEeCCCCCEEEEe-eC----CCeEEEEECCCCceeE-EeeCCcccEEEEEECCCCCeEEEEecCC-----CeEEE
Q 021247 61 LGVVSVAAHPSGIIAASA-SL----DSFVRVFDVDTNASIA-TLEASPSEVWQMQFDPKGTTLAVAGGGS-----ASVKL 129 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~-~~----d~~i~~w~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~~ 129 (315)
-.+..+.++|+|++|+-+ +. .-.|++-|+.++..+. .+... -..++|.+++..++++...+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346677889999977643 22 2348888998775322 22221 14589999988777765432 35677
Q ss_pred EecCCc--ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CCCcEEEEEcc--cceeeeeecCCccc
Q 021247 130 WDTATW--NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MDGTISVFDVT--RAKFLHHLEGHFMP 202 (315)
Q Consensus 130 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~--~~~~~~~~~~~~~~ 202 (315)
+++.+. +....+. .. ..........+.++++++..+ .++.+.+++.. .+.....+......
T Consensus 204 h~lgt~~~~d~lv~~--e~----------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 204 HTIGTPASQDELVYE--EK----------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred EECCCChhHCeEEEe--eC----------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence 777665 2111111 10 001112333444777665433 34578888842 23322222111112
Q ss_pred eEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEEeecc-c-ccEEEEEEcCCCCeEEEEeCCCcEEEEecC
Q 021247 203 VRSLVYSPVDPRVLFSASD---DTHVHMYDAEGKSLVTAMSGH-A-SWVLSVDASPDGAAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~ 273 (315)
...+. +. +..+++.... ...|...++........+..+ . ..|..+.+. .+.++++...++.-+++-++
T Consensus 272 ~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 272 EYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 22222 22 3333333322 223444444421112233333 2 357777777 44567777778876665443
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=6.9 Score=34.75 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=20.5
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEE
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFD 186 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d 186 (315)
|..+..++.|..++-.+.+|-+.++=
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEc
Confidence 66788899999998888888766653
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.25 E-value=0.34 Score=45.25 Aligned_cols=121 Identities=16% Similarity=0.267 Sum_probs=71.2
Q ss_pred cceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEE-----------EeCCCCCEEEEeeCCCe
Q 021247 15 ESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSV-----------AAHPSGIIAASASLDSF 83 (315)
Q Consensus 15 ~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~-----------~~~~~g~~l~s~~~d~~ 83 (315)
.++--|.|.|.-.. ..++..+-.+++|++.+.+... ...+.+|...+..+ ..+|||..++.+..||.
T Consensus 181 s~~~~V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVN-KVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred CCcceeeecccccc-cceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 34566778886543 3567777788999888765432 24444565544433 36899999999999999
Q ss_pred EEEEECCC-C----ceeEEeeCCc-cc-EEEEEECCCCC--------eEEEEe-cCCCeEEEEecCCccee
Q 021247 84 VRVFDVDT-N----ASIATLEASP-SE-VWQMQFDPKGT--------TLAVAG-GGSASVKLWDTATWNLI 138 (315)
Q Consensus 84 i~~w~~~~-~----~~~~~~~~~~-~~-v~~~~~~~~~~--------~~~~~~-~~d~~i~~~d~~~~~~~ 138 (315)
++.|.+-- + .+....+.|. .+ +..+ ++.+.. .+.+++ ..+..+++|....++++
T Consensus 259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 99888642 1 2222333333 12 2222 332211 123333 33567899988776665
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=10 Score=35.22 Aligned_cols=184 Identities=14% Similarity=0.257 Sum_probs=86.4
Q ss_pred CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCc
Q 021247 80 LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKK 159 (315)
Q Consensus 80 ~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (315)
.-..|+|++.. |+.+..+.....++..+.|+.+...+++ ..+|++.+|++-. +.+..... +.+ ....
T Consensus 62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~g-e~ie~~sv----g~e-----~~~~ 128 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICV--QKDGTVHVYGLLG-EFIESNSV----GFE-----SQMS 128 (829)
T ss_pred cceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEE--eccceEEEeecch-hhhccccc----ccc-----cccC
Confidence 34568888864 4444444444447889999987665443 5899999999853 22211100 000 0111
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEE-cccceeeeeec---CCccceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCC-
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFD-VTRAKFLHHLE---GHFMPVRSLVYSPV--DPRVLFSASDDTHVHMYDAEG- 232 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d-~~~~~~~~~~~---~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~- 232 (315)
.|..+.+..+| +++-..+|.+.+-. .... .+.++. .-..+-.+-...++ ....++-...--..+++-...
T Consensus 129 ~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~ 205 (829)
T KOG2280|consen 129 DIVECRFFHNG--VAVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES 205 (829)
T ss_pred ceeEEEEecCc--eEEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc
Confidence 24455554444 33333455554433 2211 111111 11111111111111 111111111000011111111
Q ss_pred -CeeEEEeecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehc
Q 021247 233 -KSLVTAMSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQS 280 (315)
Q Consensus 233 -~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 280 (315)
.+.. .+......+..+.+||+.++|+-=...|.|.+-+.+..+.+-+
T Consensus 206 ~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 206 RVQLH-ALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred ccccc-ccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 1111 1111234577889999999999999999998887766554433
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.82 E-value=6.4 Score=32.45 Aligned_cols=221 Identities=14% Similarity=0.187 Sum_probs=123.4
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEECCC------C-ceeEEeeC-----CcccEEEEEECCCCCe-----------EEEE
Q 021247 64 VSVAAHPSGIIAASASLDSFVRVFDVDT------N-ASIATLEA-----SPSEVWQMQFDPKGTT-----------LAVA 120 (315)
Q Consensus 64 ~~~~~~~~g~~l~s~~~d~~i~~w~~~~------~-~~~~~~~~-----~~~~v~~~~~~~~~~~-----------~~~~ 120 (315)
.-|+++|.+.+-++...-+...+||.+. . ..+.++.. .+.....+.|+..... .++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 5688999988878777778899999871 1 22233332 1234566777644321 1244
Q ss_pred ecCCCeEEEEecCCcce---eeeecCCCCCCCCCCccCCCCcceEEEEECC--CCCEEE-EecCCCcEEEEEcccceee-
Q 021247 121 GGGSASVKLWDTATWNL---IATLSIPRPEGLKPTDKSSSKKFVLSVAWSP--DGRRIA-CGSMDGTISVFDVTRAKFL- 193 (315)
Q Consensus 121 ~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~-~~s~dg~i~i~d~~~~~~~- 193 (315)
+++||+|.-|.-.-... ...+..+.. ........+++.. .+.+|. +--..++|.+||-.-.+..
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s---------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDAS---------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccC---------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 56888998887432211 011111111 0112234566554 345554 4456889999985322211
Q ss_pred -eeecCC-----cc-----------ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEe--ecccccEEEEEEcC-
Q 021247 194 -HHLEGH-----FM-----------PVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAM--SGHASWVLSVDASP- 253 (315)
Q Consensus 194 -~~~~~~-----~~-----------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~i~~~~~~~- 253 (315)
..+... -. -|+-..-.+ +.+.=+.+-.-|.|-+||.... +++++ .+.-...+.++..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChh
Confidence 001000 00 011111111 1122234444578999998765 44433 34455667788766
Q ss_pred -----CCCeEEEEeCCCcEEEEecCccceehcccccc------cceEEEEEee
Q 021247 254 -----DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHT------DQVWGVSFRP 295 (315)
Q Consensus 254 -----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~ 295 (315)
.+.+|+---.||+|..||..+++.+..+.... +.+|+++|-.
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 46788877789999999999888776665433 4588888876
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.72 E-value=3.4 Score=35.96 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=54.7
Q ss_pred cceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCccc-EEEEE-ECCC----------------CCeEEEEec
Q 021247 61 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSE-VWQMQ-FDPK----------------GTTLAVAGG 122 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-v~~~~-~~~~----------------~~~~~~~~~ 122 (315)
..+.++..+|++.+.++...=|.|.++|+.++..+...++-.+. +--+. ..+. ..++++-..
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45788999999999998888899999999988766555443221 10000 0000 123455566
Q ss_pred CCCeEEEEecCCcceeeeecC
Q 021247 123 GSASVKLWDTATWNLIATLSI 143 (315)
Q Consensus 123 ~d~~i~~~d~~~~~~~~~~~~ 143 (315)
.-|.|-||.++++..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 788999999988766655543
No 435
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.63 E-value=3 Score=36.30 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=33.9
Q ss_pred cceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCc
Q 021247 159 KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHF 200 (315)
Q Consensus 159 ~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~ 200 (315)
..+.+++.+|.+++.++.-.-|+|.++|+.++..+.-+++..
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 447789999999888887777899999999887776666543
No 436
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.52 E-value=0.61 Score=25.04 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=19.7
Q ss_pred ccccceEEEEEeeCCCEEEEEe-CC--CcEEEe
Q 021247 283 NHTDQVWGVSFRPLGGRVVSVS-DD--KSISLY 312 (315)
Q Consensus 283 ~~~~~v~~~~~s~~~~~l~s~~-~d--~~i~i~ 312 (315)
.....-....|||||++|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344567789999999987544 44 677766
No 437
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.37 E-value=14 Score=35.33 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=45.7
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeEEeeCCccc--------EEEEEECC----------------CCCeEEEEecCCCeE
Q 021247 72 GIIAASASLDSFVRVFDVDTNASIATLEASPSE--------VWQMQFDP----------------KGTTLAVAGGGSASV 127 (315)
Q Consensus 72 g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~~~~~~~~d~~i 127 (315)
+..+..++.++.|.-.|..+++.+..++..... +..+.+-. .+..+ +.+..|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV-~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI-ILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE-EEecCCCeE
Confidence 445556677888999999999888776543211 11222211 12234 456779999
Q ss_pred EEEecCCcceeeeec
Q 021247 128 KLWDTATWNLIATLS 142 (315)
Q Consensus 128 ~~~d~~~~~~~~~~~ 142 (315)
.-.|.++++.+..+.
T Consensus 273 iALDA~TGk~~W~fg 287 (764)
T TIGR03074 273 IALDADTGKLCEDFG 287 (764)
T ss_pred EEEECCCCCEEEEec
Confidence 999999999887663
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.29 E-value=8.9 Score=33.03 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=53.4
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEccc-------ce-eeeeecC----CccceEEEEEcCCCCcEEEEEeCC------
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTR-------AK-FLHHLEG----HFMPVRSLVYSPVDPRVLFSASDD------ 222 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~-------~~-~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d------ 222 (315)
...+++.+++ .++ +......++.|... .+ .+..+.. +......+.|.| ++.+.++-+..
T Consensus 74 p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 4688888888 444 44443333434421 11 1222222 123467888988 55666554421
Q ss_pred -------------CeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247 223 -------------THVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD 264 (315)
Q Consensus 223 -------------~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 264 (315)
+.|..++..+++......+ ......++|+|+|+++++-..+
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 4566666665543222223 2335689999999887764433
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.17 E-value=0.025 Score=48.60 Aligned_cols=140 Identities=11% Similarity=0.176 Sum_probs=94.7
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-Eee-
Q 021247 163 SVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVT-AMS- 240 (315)
Q Consensus 163 ~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~- 240 (315)
...|-|++..++.+..+..+..||-....... .. ..+....++|...++..++.+-..+.+.+||..+..-.. ...
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE-LN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecc-cC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 56777887778888888889999954332222 11 223445677777666677777788899999987542111 111
Q ss_pred cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 241 GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
.|.... +.|++....++.+-..|.+.|++....+..-.+-.|...++..++.+-+ +++.++.|.
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 122222 5688888888888889999999988766666554588899999999865 455555544
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.88 E-value=0.27 Score=45.86 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=77.3
Q ss_pred CCCcEEEEEccccee-eeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEEEe-----ecccccEEEE
Q 021247 178 MDGTISVFDVTRAKF-LHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE--GKSLVTAM-----SGHASWVLSV 249 (315)
Q Consensus 178 ~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~-----~~~~~~i~~~ 249 (315)
..+.+++-+..+... ..-.++..+.+..+.|-..+...+. -.-|.+.+||.. .+++...+ ..-...+.-+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 445666666543321 1223445566677777543333332 334678889864 23322222 2222333444
Q ss_pred EEcC---CCCeEEEEeCCCcEEEEecCccceehcccccccceEEE-----------EEeeCCCEEEEEeCCCcEEEeec
Q 021247 250 DASP---DGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGV-----------SFRPLGGRVVSVSDDKSISLYEY 314 (315)
Q Consensus 250 ~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~-----------~~s~~~~~l~s~~~d~~i~i~~~ 314 (315)
.|.| +..++..+-.++.|++...+.... ..+..|+..+..+ .+||||..++..+.||.++.|..
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 5544 556777777888888877654322 3334465544432 48999999999999999999875
No 441
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.94 E-value=12 Score=32.34 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=10.0
Q ss_pred cEEEEEcccceee
Q 021247 181 TISVFDVTRAKFL 193 (315)
Q Consensus 181 ~i~i~d~~~~~~~ 193 (315)
.+.+||..+++..
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5888998877654
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.67 E-value=3.4 Score=32.58 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCeeEEEe-------e-------cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCcc
Q 021247 212 DPRVLFSASDDTHVHMYDAEGKSLVTAM-------S-------GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMR 275 (315)
Q Consensus 212 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 275 (315)
.+.++++-+.+|.+++||++.++.+... . .....|..+.++.+|.-+++-+ +|..+.|+.+.+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 4668999999999999999887654321 1 2456688899998888777654 578899987654
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.51 E-value=2.1 Score=23.09 Aligned_cols=32 Identities=47% Similarity=0.664 Sum_probs=25.3
Q ss_pred CCCCeEEEEecCCCeEEEEecCCcceeeeecC
Q 021247 112 PKGTTLAVAGGGSASVKLWDTATWNLIATLSI 143 (315)
Q Consensus 112 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 143 (315)
|+++.++++...+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56777888887889999999988777766644
No 444
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.04 E-value=13 Score=31.49 Aligned_cols=244 Identities=14% Similarity=0.190 Sum_probs=112.9
Q ss_pred ceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCc--ceee----ccccccceEEEEeCCC----CCEEEEeeCC----
Q 021247 16 SVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ--LERT----NTGHCLGVVSVAAHPS----GIIAASASLD---- 81 (315)
Q Consensus 16 ~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~--~~~~----~~~h~~~v~~~~~~~~----g~~l~s~~~d---- 81 (315)
..++++|.|++. ++.+-..|.|++++.+... .... ......+...++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~-----l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGR-----LLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSC-----EEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCc-----EEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 568999999864 5556779999999843322 1111 1234457899999994 5444444421
Q ss_pred ----CeEEEEECCCC--c-----ee-EEeeC---CcccEEEEEECCCCCeEEEEecCCCe---EEEEecCCcceeeeecC
Q 021247 82 ----SFVRVFDVDTN--A-----SI-ATLEA---SPSEVWQMQFDPKGTTLAVAGGGSAS---VKLWDTATWNLIATLSI 143 (315)
Q Consensus 82 ----~~i~~w~~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~~---i~~~d~~~~~~~~~~~~ 143 (315)
..|.-|....+ . .+ ..... .......+.|.|++.. +++.++.+. ..--+...++.+. +..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~L-Yvs~G~~~~~~~~~~~~~~~G~ilr-i~~ 155 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKL-YVSVGDGGNDDNAQDPNSLRGKILR-IDP 155 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEE-EEEEB-TTTGGGGCSTTSSTTEEEE-EET
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcE-EEEeCCCCCcccccccccccceEEE-ecc
Confidence 23444444433 1 11 11121 1234567999999854 444433322 0000000122211 111
Q ss_pred CCC--CCCCCCc---------cCCCCcceEEEEECCC-CCEEEE-ecCCCcEEEEEcccce-------------------
Q 021247 144 PRP--EGLKPTD---------KSSSKKFVLSVAWSPD-GRRIAC-GSMDGTISVFDVTRAK------------------- 191 (315)
Q Consensus 144 ~~~--~~~~~~~---------~~~~~~~i~~~~~~~~-~~~l~~-~s~dg~i~i~d~~~~~------------------- 191 (315)
... ...+... ..+.+ -...++|+|. |+++++ -+.++.=.+--+..+.
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred cCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 100 0000000 01111 1357999998 665543 2333322222121111
Q ss_pred ----------eeeeecCCccceEEEEEcC------CCCcEEEEEeCCCeEEEEeCCCC-eeEE--E-eecccccEEEEEE
Q 021247 192 ----------FLHHLEGHFMPVRSLVYSP------VDPRVLFSASDDTHVHMYDAEGK-SLVT--A-MSGHASWVLSVDA 251 (315)
Q Consensus 192 ----------~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~d~~i~~wd~~~~-~~~~--~-~~~~~~~i~~~~~ 251 (315)
+...+..| ..+..+.|-+ ..+.++++.-..+.|....++.. .... . +......+..+++
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 11112222 3455566542 13445666555677777776533 2221 1 1233447899999
Q ss_pred cCCCCeEEEEeCCCcEE
Q 021247 252 SPDGAAITTGSSDRTVK 268 (315)
Q Consensus 252 ~~~~~~l~s~~~d~~i~ 268 (315)
.|||.+.++-..+|.|.
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999888888888874
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.65 E-value=13 Score=36.99 Aligned_cols=135 Identities=13% Similarity=0.218 Sum_probs=78.4
Q ss_pred CCCcEEEEEcccceeeeeecCCccceEEEEEcCCCC-------cEEEEEeCCCeEEEEeC----CCCee---E--EEeec
Q 021247 178 MDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDP-------RVLFSASDDTHVHMYDA----EGKSL---V--TAMSG 241 (315)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~~wd~----~~~~~---~--~~~~~ 241 (315)
.|+.+.+|+.+++.....+.+-...|..+......+ ++++.-+.--.|.++-. .+... . ..+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 678999999988766666655555555554432122 22222222223444322 11111 0 11223
Q ss_pred ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCc----c---c-e----------------ehccc-ccccceEEEEEeeC
Q 021247 242 HASWVLSVDASPDGAAITTGSSDRTVKLWDLNM----R---A-A----------------MQSMT-NHTDQVWGVSFRPL 296 (315)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~---~-~----------------~~~~~-~~~~~v~~~~~s~~ 296 (315)
....|+++....+|+++.+|- || .+|.+.. + + + +..+. .+.++|..++....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 355678888788899877654 55 4454421 0 0 0 01123 45678999998877
Q ss_pred CCEEEEEeCCCcEEEeecC
Q 021247 297 GGRVVSVSDDKSISLYEYS 315 (315)
Q Consensus 297 ~~~l~s~~~d~~i~i~~~~ 315 (315)
-+.+.+-+..++|++|+++
T Consensus 254 R~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred cceeeeeccCceEEEEEcc
Confidence 7788999999999999974
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.47 E-value=3.2 Score=37.88 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=29.3
Q ss_pred ceEEEEeCC----CCCEEEEeeCCCeEEEEECCCCceeEEeeC
Q 021247 62 GVVSVAAHP----SGIIAASASLDSFVRVFDVDTNASIATLEA 100 (315)
Q Consensus 62 ~v~~~~~~~----~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 100 (315)
.+..+.++. +..++++.+.|+++|+||+.+++++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 355566665 667899999999999999999999766543
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.23 E-value=22 Score=33.19 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred ccccceEEEEEeecCCCCCcEEEEeeCCCcEEEEcCCCCcceeec---cccccceEEEEeCCCCCEEEEeeCCCeEEEEE
Q 021247 12 AHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTN---TGHCLGVVSVAAHPSGIIAASASLDSFVRVFD 88 (315)
Q Consensus 12 ~h~~~v~~v~~~~~~~~~~~~l~sgs~d~~v~~w~~~~~~~~~~~---~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~ 88 (315)
.|. ++-.+.|+.... |+.-..||++.+|+.-........ ......|..+.+..+|-.+++.+ |.+.+-+
T Consensus 82 ~~~-~lI~mgWs~~ee-----LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~--g~v~~i~ 153 (829)
T KOG2280|consen 82 KHG-ELIGMGWSDDEE-----LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS--GQVILIN 153 (829)
T ss_pred cCC-CeeeecccCCce-----EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecC--CcEEEEc
Confidence 444 777899987664 788899999999987432221111 11223466666666776666553 4555444
Q ss_pred CCCCceeEEeeCCc-----ccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEE
Q 021247 89 VDTNASIATLEASP-----SEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS 163 (315)
Q Consensus 89 ~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (315)
-.....+.....-+ ...|.+--.+....+++.- +-. -+..+......... ..........+..
T Consensus 154 ~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v--~~~-------v~~~~~q~~~~~~q---~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 154 GVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDV--DVA-------VGLHICQVEESRVQ---LHALSWPNSSVVK 221 (829)
T ss_pred CCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEee--chh-------hhhcccceeccccc---ccccCCCCceEEE
Confidence 33322222322211 1233322221112221110 000 00000000000000 0000111234778
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcccceeeeeecC-CccceEEEEEcC
Q 021247 164 VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG-HFMPVRSLVYSP 210 (315)
Q Consensus 164 ~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~ 210 (315)
+..+|+.++|+--+..|.|.+-+....+....+.. ...+...+.|..
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 99999999999999999999988776665555441 122223556653
No 448
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.14 E-value=26 Score=33.86 Aligned_cols=110 Identities=10% Similarity=0.056 Sum_probs=62.2
Q ss_pred EECCCCCEEEEecCCCcEEEEEcccceeeeee-cCCccceEEEEEcCC--CCc---EEEEEeCCCeEEE--EeCCCCeeE
Q 021247 165 AWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPV--DPR---VLFSASDDTHVHM--YDAEGKSLV 236 (315)
Q Consensus 165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~---~l~s~~~d~~i~~--wd~~~~~~~ 236 (315)
..+.+...++.++.++.+...++..+.....- +.....|.|+.++|. ++. +++.|..+..+.+ +........
T Consensus 494 ~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~ 573 (1096)
T KOG1897|consen 494 VVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT 573 (1096)
T ss_pred EEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee
Confidence 33344456777777777877777655522111 123467899999975 333 7777776655433 322222222
Q ss_pred EEeeccc---ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 237 TAMSGHA---SWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 237 ~~~~~~~---~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
....+-. -.|.-..+-.+..+|.++..||.+..|.++.
T Consensus 574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 2211111 1233344444578999999999988776543
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.13 E-value=15 Score=31.06 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=65.4
Q ss_pred cceEEEEeCCCCCEEEEeeCCCe------EEEEECCCC----ceeE-----EeeCCcc--------cEEEEEECCCCCeE
Q 021247 61 LGVVSVAAHPSGIIAASASLDSF------VRVFDVDTN----ASIA-----TLEASPS--------EVWQMQFDPKGTTL 117 (315)
Q Consensus 61 ~~v~~~~~~~~g~~l~s~~~d~~------i~~w~~~~~----~~~~-----~~~~~~~--------~v~~~~~~~~~~~~ 117 (315)
++...|.+.+++..+++.+.++. +...++... ..+. .+....+ ...++++.+++. +
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence 45677778766666677777777 555555431 1111 1111111 344677755555 5
Q ss_pred EEEecCC------CeEEEEecCCcceeeeecCCCCCCCCCC--ccCCCCcceEEEEECCCCCEEEEec
Q 021247 118 AVAGGGS------ASVKLWDTATWNLIATLSIPRPEGLKPT--DKSSSKKFVLSVAWSPDGRRIACGS 177 (315)
Q Consensus 118 ~~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~s 177 (315)
+++.-.+ ..|..++.. ++....+.+|........ .....+.-+-+|+++|+|+.|++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 5666666 788888876 677666655432211110 1223344588999999999666654
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.07 E-value=14 Score=30.51 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=60.3
Q ss_pred CcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEEee----cccccEEEE
Q 021247 180 GTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSAS------DDTHVHMYDAEGKSLVTAMS----GHASWVLSV 249 (315)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~----~~~~~i~~~ 249 (315)
..|.+||..+.+...--.+-.+.|+++.|.. +.+++++|. ....+..||.++.+-...-. .-.+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 3588999887776655555567899999984 566777664 34568889988764322211 124667777
Q ss_pred EEcC-CC-CeEEEEe-CC--CcEEEEecCccceeh
Q 021247 250 DASP-DG-AAITTGS-SD--RTVKLWDLNMRAAMQ 279 (315)
Q Consensus 250 ~~~~-~~-~~l~s~~-~d--~~i~iwd~~~~~~~~ 279 (315)
.+.. ++ ++.+.|. .+ ..|..||-..+..+.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 6633 33 3444443 23 346777765544443
No 451
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.74 E-value=3 Score=22.51 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEEEeec
Q 021247 211 VDPRVLFSASDDTHVHMYDAEGKSLVTAMSG 241 (315)
Q Consensus 211 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 241 (315)
++..++++...++.|.++|..+...+..+..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 3445566666788999999988777666543
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.71 E-value=0.071 Score=45.98 Aligned_cols=147 Identities=20% Similarity=0.281 Sum_probs=96.3
Q ss_pred ceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeee
Q 021247 62 GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL 141 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 141 (315)
......+.+.+.-++.++.+..+..+|-... ..... ..+.....++|+.++..+++.+...+.+.+||+.+..... +
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-L 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-L 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-H
Confidence 4445566677666777777888888885432 22222 1234566788888887777777888999999987532110 0
Q ss_pred cCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeC
Q 021247 142 SIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASD 221 (315)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 221 (315)
. ......-.=+.|++....++.+...|.+.+++..+.+.+-.+..|...+.++++.+.+ +.+.++.
T Consensus 113 E------------~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dc 178 (615)
T KOG2247|consen 113 E------------SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDC 178 (615)
T ss_pred h------------ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCc
Confidence 0 0000001126788888888888899999999988887776666688899999998733 4455555
Q ss_pred CCeE
Q 021247 222 DTHV 225 (315)
Q Consensus 222 d~~i 225 (315)
|..+
T Consensus 179 d~~L 182 (615)
T KOG2247|consen 179 DNTL 182 (615)
T ss_pred HHHH
Confidence 5443
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.36 E-value=26 Score=32.95 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=67.2
Q ss_pred ceEEEEECC--CCCEEEEecCCCcEEEEEccc-------c----e---------eeeeecCCccceEEEEEcCC-CCcEE
Q 021247 160 FVLSVAWSP--DGRRIACGSMDGTISVFDVTR-------A----K---------FLHHLEGHFMPVRSLVYSPV-DPRVL 216 (315)
Q Consensus 160 ~i~~~~~~~--~~~~l~~~s~dg~i~i~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~~~-~~~~l 216 (315)
.|+-|.... ....|+++..||.|.+|.+++ . + +...+. -....+.++++.. ..+++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355555544 446788999999999996521 1 0 001111 2236788888722 45566
Q ss_pred EEEeCCCeEEEEeCCC--Ce-eEEEeecccccEEEEEEcCCC-----C-eEEEEeCCCcEEEEecC
Q 021247 217 FSASDDTHVHMYDAEG--KS-LVTAMSGHASWVLSVDASPDG-----A-AITTGSSDRTVKLWDLN 273 (315)
Q Consensus 217 ~s~~~d~~i~~wd~~~--~~-~~~~~~~~~~~i~~~~~~~~~-----~-~l~s~~~d~~i~iwd~~ 273 (315)
+.++....|.||-... .+ .......|..-|.+|+|-++. . .|++++-.|.+-+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 6666666777664321 11 111111244557788886643 2 78889999999998883
No 454
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.19 E-value=14 Score=29.84 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=79.4
Q ss_pred ceEEEEeCCCCCEEEEee---CCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEE-ecCCcce
Q 021247 62 GVVSVAAHPSGIIAASAS---LDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLW-DTATWNL 137 (315)
Q Consensus 62 ~v~~~~~~~~g~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~-d~~~~~~ 137 (315)
.+.+.+++++|..++... ....++++... ....... ....+..-.|++++....+ ...+...+++ +...++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v-~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTV-DDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEE-EcCCCceEEEEecCCCcc
Confidence 678899999998877655 33445555443 3222221 2235666778888665443 3444555555 2222221
Q ss_pred e-eeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec---CCCcEEEEEcc---cc--ee----eeeecCCccceE
Q 021247 138 I-ATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS---MDGTISVFDVT---RA--KF----LHHLEGHFMPVR 204 (315)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s---~dg~i~i~d~~---~~--~~----~~~~~~~~~~v~ 204 (315)
. ..+..+. ....|..+.++|||..++.-. .++.|.+--+. .+ .. ..........+.
T Consensus 101 ~~~~v~~~~-----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 101 EPVEVDWPG-----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred eeEEecccc-----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 1 1111100 011599999999999887654 35677776553 22 11 111223345788
Q ss_pred EEEEcCCCCcEEEEEeC
Q 021247 205 SLVYSPVDPRVLFSASD 221 (315)
Q Consensus 205 ~~~~~~~~~~~l~s~~~ 221 (315)
++.|.+ +..+++.+..
T Consensus 170 ~v~W~~-~~~L~V~~~~ 185 (253)
T PF10647_consen 170 DVAWSD-DSTLVVLGRS 185 (253)
T ss_pred eeeecC-CCEEEEEeCC
Confidence 999997 4555555443
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.83 E-value=3.2 Score=37.95 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=26.3
Q ss_pred cEEEEEEcC----CCCeEEEEeCCCcEEEEecCccceeh
Q 021247 245 WVLSVDASP----DGAAITTGSSDRTVKLWDLNMRAAMQ 279 (315)
Q Consensus 245 ~i~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~ 279 (315)
....+++++ +..+|++-+.|+++|+||+.++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 345566666 66799999999999999999988744
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.94 E-value=20 Score=30.19 Aligned_cols=25 Identities=4% Similarity=0.058 Sum_probs=16.4
Q ss_pred CCCEEEEecCCC----cEEEEEcccceee
Q 021247 169 DGRRIACGSMDG----TISVFDVTRAKFL 193 (315)
Q Consensus 169 ~~~~l~~~s~dg----~i~i~d~~~~~~~ 193 (315)
+++..+.|+.++ .+..||+.+.+..
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 456667776553 3568898877653
No 457
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.44 E-value=7.9 Score=29.22 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.9
Q ss_pred ccEEEEEEcCCC------CeEEEEeCCCcEEEEecC
Q 021247 244 SWVLSVDASPDG------AAITTGSSDRTVKLWDLN 273 (315)
Q Consensus 244 ~~i~~~~~~~~~------~~l~s~~~d~~i~iwd~~ 273 (315)
..+.+++|||.| -+|++-..++.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 368899999954 378999999999999755
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.80 E-value=4.8 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=20.6
Q ss_pred cccEEEEEECCCCCeEEEEecCC--CeEEEE
Q 021247 102 PSEVWQMQFDPKGTTLAVAGGGS--ASVKLW 130 (315)
Q Consensus 102 ~~~v~~~~~~~~~~~~~~~~~~d--~~i~~~ 130 (315)
...-....|+|+|+.+++++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34566778999999998887766 555554
No 459
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.59 E-value=28 Score=30.66 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.9
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEEEEccc
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISVFDVTR 189 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~ 189 (315)
.|..++..+..+.+++-+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388999999889999999999999999964
No 460
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.48 E-value=31 Score=30.38 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=25.0
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCc
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 274 (315)
..|.++...+..+.+++-..++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899999889999999999999999963
No 461
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.00 E-value=27 Score=29.37 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCCEEEEecC-----CCcEEEEEcccceeeee--ecCCccceEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCe
Q 021247 169 DGRRIACGSM-----DGTISVFDVTRAKFLHH--LEGHFMPVRSLVYSPVDPRVLFSASDDT----HVHMYDAEGKS 234 (315)
Q Consensus 169 ~~~~l~~~s~-----dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~ 234 (315)
+++..+.|+. ...+..||+.+.+.... +......-..+.. .++++++.|+.++ .+.+||.++.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4556666653 23588899887665332 2111111111111 2456777777653 25678877643
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.22 E-value=16 Score=26.17 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=60.0
Q ss_pred EECCCCCEEEEecCCCcEEEEEccccee--------eeeecCCccceEEEEEcC---CCC-cEEEEEeCCCeEEEEeCCC
Q 021247 165 AWSPDGRRIACGSMDGTISVFDVTRAKF--------LHHLEGHFMPVRSLVYSP---VDP-RVLFSASDDTHVHMYDAEG 232 (315)
Q Consensus 165 ~~~~~~~~l~~~s~dg~i~i~d~~~~~~--------~~~~~~~~~~v~~~~~~~---~~~-~~l~s~~~d~~i~~wd~~~ 232 (315)
.|......|++++..|.|.+++...... +..+ .-...|++++-.+ .+. ..|+.| ...+|..||...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 4445556888888999999998764321 1122 2334566665433 333 345444 455799999876
Q ss_pred CeeEEEeecccccEEEEEEcC---CCCeEEEEeCCCcEEEEecCc
Q 021247 233 KSLVTAMSGHASWVLSVDASP---DGAAITTGSSDRTVKLWDLNM 274 (315)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d~~i~iwd~~~ 274 (315)
..-+.. +.-...++++.+-. ...-++..+.+..|.-||..-
T Consensus 83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred Cchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 543321 12234566665532 223345555577777777653
No 463
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.10 E-value=31 Score=29.36 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=10.2
Q ss_pred CcEEEEEcccceee
Q 021247 180 GTISVFDVTRAKFL 193 (315)
Q Consensus 180 g~i~i~d~~~~~~~ 193 (315)
..+..||..+++..
T Consensus 168 ~~v~~YDp~t~~W~ 181 (346)
T TIGR03547 168 KNVLSYDPSTNQWR 181 (346)
T ss_pred ceEEEEECCCCcee
Confidence 46888998877654
No 464
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=81.95 E-value=4.6 Score=19.81 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEE
Q 021247 246 VLSVDASPDGAAITTGSSDRTVKLW 270 (315)
Q Consensus 246 i~~~~~~~~~~~l~s~~~d~~i~iw 270 (315)
..+++++++|+++++=..+.+|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776666666654
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.83 E-value=25 Score=28.23 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=69.8
Q ss_pred EEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCC---CeEEEEECCC--Ccee-EEe---eCCcccEEEEEECCC
Q 021247 43 KLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLD---SFVRVFDVDT--NASI-ATL---EASPSEVWQMQFDPK 113 (315)
Q Consensus 43 ~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d---~~i~~w~~~~--~~~~-~~~---~~~~~~v~~~~~~~~ 113 (315)
.+||+.+.+..........-+..-.+-++|.++.+|+.- ..+|+++.-. ..+- ... -.....--.+..-|+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 467777665433221111222233466899999888652 3477777544 0111 000 001111123344578
Q ss_pred CCeEEEEecCCCeEEEEecCCc-ceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee
Q 021247 114 GTTLAVAGGGSASVKLWDTATW-NLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF 192 (315)
Q Consensus 114 ~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~ 192 (315)
|+.+++.|....+..+|.-+.. .....+..... ..........--+-..|+|+.|+.+..+. .+||..+++.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~-----~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ-----TSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchh-----hhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 8876665555444445543211 00000000000 00011111223466679999998887654 4568877766
Q ss_pred eeeec
Q 021247 193 LHHLE 197 (315)
Q Consensus 193 ~~~~~ 197 (315)
+..+.
T Consensus 202 ~~~lP 206 (243)
T PF07250_consen 202 VRTLP 206 (243)
T ss_pred EeeCC
Confidence 55543
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.25 E-value=5.8 Score=30.89 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=35.6
Q ss_pred eEEEEeCCCcEEEEecCc--cceehcccccccceEEEEEeeCCCEEEEEeCC
Q 021247 257 AITTGSSDRTVKLWDLNM--RAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 306 (315)
Q Consensus 257 ~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 306 (315)
.|..+...+.|.+|++.. .+++.++..- +.|..+.++..|.+|+|.=.+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEee
Confidence 444446677899999983 3445555543 789999999999999986443
No 467
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.86 E-value=39 Score=29.79 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCCcceEEEEECCCCCEEEEecCCCcEEEEEccccee----eeeecCCccceEEEEEcC
Q 021247 156 SSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKF----LHHLEGHFMPVRSLVYSP 210 (315)
Q Consensus 156 ~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~ 210 (315)
..++.|.++.|++|.+.+|+--.+.+|.+++....+. ..+.+..+..|..+.|+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS 122 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence 3455799999999999999999999999998732222 122333445688888875
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.57 E-value=37 Score=29.35 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=8.8
Q ss_pred eEEEEecCCccee
Q 021247 126 SVKLWDTATWNLI 138 (315)
Q Consensus 126 ~i~~~d~~~~~~~ 138 (315)
.+.+||..+.+..
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5788887765543
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.72 E-value=21 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=24.2
Q ss_pred ccEEEEEECCCC-----CeEEEEecCCCeEEEEecC
Q 021247 103 SEVWQMQFDPKG-----TTLAVAGGGSASVKLWDTA 133 (315)
Q Consensus 103 ~~v~~~~~~~~~-----~~~~~~~~~d~~i~~~d~~ 133 (315)
..+..++|+|.| ..++++-..++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 368899999954 4567777889999999754
No 470
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.72 E-value=32 Score=28.13 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=117.8
Q ss_pred EEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEECCCCceeE---EeeCCcccEEEE
Q 021247 32 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIA---TLEASPSEVWQM 108 (315)
Q Consensus 32 ~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~~~~~~~~---~~~~~~~~v~~~ 108 (315)
+-+++...+.|--.|+.+++....--+.......+...|+|..-++-+.. -|.-.|-++.+... ..+.........
T Consensus 75 VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~ 153 (353)
T COG4257 75 VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETA 153 (353)
T ss_pred eEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccce
Confidence 45555555555556666666544433444455667778888665554333 34444554443221 123344556777
Q ss_pred EECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCCcEEEEEcc
Q 021247 109 QFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 188 (315)
Q Consensus 109 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg~i~i~d~~ 188 (315)
.|++.|+.-+ ++. .|.-.--|-. .+.+..+..++.. .-..|+..|+|..-++.-.++.|-..|..
T Consensus 154 vfD~~G~lWF-t~q-~G~yGrLdPa-~~~i~vfpaPqG~------------gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 154 VFDPWGNLWF-TGQ-IGAYGRLDPA-RNVISVFPAPQGG------------GPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred eeCCCccEEE-eec-cccceecCcc-cCceeeeccCCCC------------CCcceEECCCCcEEEEeccccceEEcccc
Confidence 8888887543 432 1111111111 1222333222211 13578888999887777777777777765
Q ss_pred cceeeeeec---CCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EEeecccccEEEEEEcCCCCeEEEEeCC
Q 021247 189 RAKFLHHLE---GHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLV-TAMSGHASWVLSVDASPDGAAITTGSSD 264 (315)
Q Consensus 189 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~d 264 (315)
.+.. +.+. .-....+.+--+| .++.-++-...+.++.||.....-. ..+.+-...-.++.++..++.-.+--.-
T Consensus 219 ~~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 219 AGHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred cCCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc
Confidence 4421 1111 1011223332233 5667777777788888887654322 2233333444566666666655555555
Q ss_pred CcEEEEecCc
Q 021247 265 RTVKLWDLNM 274 (315)
Q Consensus 265 ~~i~iwd~~~ 274 (315)
|.|.-||-++
T Consensus 297 gai~rfdpet 306 (353)
T COG4257 297 GAIGRFDPET 306 (353)
T ss_pred CceeecCccc
Confidence 6666666554
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.60 E-value=34 Score=28.26 Aligned_cols=97 Identities=18% Similarity=0.292 Sum_probs=57.3
Q ss_pred CCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEec------CCCcEEEEEcccceeeeeec
Q 021247 124 SASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGS------MDGTISVFDVTRAKFLHHLE 197 (315)
Q Consensus 124 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s------~dg~i~i~d~~~~~~~~~~~ 197 (315)
-..|++||..+.+...-- ..-...|+.+.|..+.+.+++|. ....+..||+.+.... .+.
T Consensus 15 C~~lC~yd~~~~qW~~~g-------------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~ 80 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG-------------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLG 80 (281)
T ss_pred CCEEEEEECCCCEeecCC-------------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecC
Confidence 456889997654432110 11234589999987766777764 3446888998766542 222
Q ss_pred C-----CccceEEEEEcCCCC-cEEEEEe---CCCeEEEEeCCCCe
Q 021247 198 G-----HFMPVRSLVYSPVDP-RVLFSAS---DDTHVHMYDAEGKS 234 (315)
Q Consensus 198 ~-----~~~~v~~~~~~~~~~-~~l~s~~---~d~~i~~wd~~~~~ 234 (315)
. -..++..+.+...+. ++.++|. .+..|..||-....
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 2 136788877754444 3444443 24468888765443
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.22 E-value=35 Score=28.26 Aligned_cols=177 Identities=16% Similarity=0.236 Sum_probs=93.0
Q ss_pred eEEEEECCCCceeEEeeCC------cccEEEEEECCCC-----CeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCC-
Q 021247 83 FVRVFDVDTNASIATLEAS------PSEVWQMQFDPKG-----TTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK- 150 (315)
Q Consensus 83 ~i~~w~~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~- 150 (315)
+|-+||+.+++.+.++... ......+.++... .+.+++-....-|.++|+.+++..+...........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899998887776433 2456677776532 345566666679999999987665444221100000
Q ss_pred CC-----ccCCCCcceEEEEECC---CCCEEEEecCCC-cEEEEEc---ccce---------eeeeecCCc-cceEEEEE
Q 021247 151 PT-----DKSSSKKFVLSVAWSP---DGRRIACGSMDG-TISVFDV---TRAK---------FLHHLEGHF-MPVRSLVY 208 (315)
Q Consensus 151 ~~-----~~~~~~~~i~~~~~~~---~~~~l~~~s~dg-~i~i~d~---~~~~---------~~~~~~~~~-~~v~~~~~ 208 (315)
.. ........+..++.+| ++++|.-....+ .++--.. +... ..+.+ +.. .....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 00 0011122266677765 566666554333 2222221 1111 01111 111 23455667
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCC------eeEEEeecccccEEEEEEcC--CCCeEEEE
Q 021247 209 SPVDPRVLFSASDDTHVHMYDAEGK------SLVTAMSGHASWVLSVDASP--DGAAITTG 261 (315)
Q Consensus 209 ~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~~~~~i~~~~~~~--~~~~l~s~ 261 (315)
.+ ++.++++--..+.|..|+..+. ..+..-...-.++.++.+.+ +|.+-+..
T Consensus 194 D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 76 7778888888999999998862 12222222256888999988 66654443
No 473
>PLN02193 nitrile-specifier protein
Probab=78.42 E-value=50 Score=29.62 Aligned_cols=103 Identities=12% Similarity=0.079 Sum_probs=50.4
Q ss_pred CCCEEEEecCC-----CcEEEEEcccceeeeeecC----CccceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCe
Q 021247 169 DGRRIACGSMD-----GTISVFDVTRAKFLHHLEG----HFMPVRSLVYSPVDPRVLFSASDD-----THVHMYDAEGKS 234 (315)
Q Consensus 169 ~~~~l~~~s~d-----g~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 234 (315)
++...+.|+.+ ..+..||+.+.+....-.. ....-.++.. .+.++++.|+.+ ..+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 34555666644 3588899987765432111 0001111221 245666666654 246678876543
Q ss_pred eEEEee-----cccccEEEEEEcCCCCeEEEEeCC----CcEEEEecCcc
Q 021247 235 LVTAMS-----GHASWVLSVDASPDGAAITTGSSD----RTVKLWDLNMR 275 (315)
Q Consensus 235 ~~~~~~-----~~~~~i~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~ 275 (315)
-..... ...... .+. .-++++++.++.+ ..+.+||+.+.
T Consensus 306 W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCC
Confidence 221100 000011 111 1256677777765 45788888764
No 474
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.07 E-value=6.6 Score=19.26 Aligned_cols=26 Identities=4% Similarity=0.159 Sum_probs=20.6
Q ss_pred cceEEEEEeeCCCEEEEEeCCCcEEEee
Q 021247 286 DQVWGVSFRPLGGRVVSVSDDKSISLYE 313 (315)
Q Consensus 286 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~ 313 (315)
+.|.+++..+. +++.+.+-+.+|||.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 46778887764 888888889999984
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.89 E-value=78 Score=31.54 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=23.0
Q ss_pred cCCCCeEEEEeCCCcEEEEecCccce
Q 021247 252 SPDGAAITTGSSDRTVKLWDLNMRAA 277 (315)
Q Consensus 252 ~~~~~~l~s~~~d~~i~iwd~~~~~~ 277 (315)
++++..++++..||.+.+||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999988643
No 476
>PLN02193 nitrile-specifier protein
Probab=77.78 E-value=53 Score=29.50 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=51.3
Q ss_pred CeEEEEecCC-----CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCCEEEEecCCC-----cEEE
Q 021247 115 TTLAVAGGGS-----ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG-----TISV 184 (315)
Q Consensus 115 ~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~s~dg-----~i~i 184 (315)
+.+++.|+.+ ..+..||+.+.+....-... ..|.....| +++. -+++..+.|+.++ .+..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~----~~P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVE----EGPTPRSFH-----SMAA-DEENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCC----CCCCCccce-----EEEE-ECCEEEEECCCCCCCCcceEEE
Confidence 4466666654 45788888775443221110 001111111 2222 2455666666543 4678
Q ss_pred EEcccceeeeeec-----CCccceEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCe
Q 021247 185 FDVTRAKFLHHLE-----GHFMPVRSLVYSPVDPRVLFSASDD----THVHMYDAEGKS 234 (315)
Q Consensus 185 ~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~ 234 (315)
||+.+.+....-. ...... .+... ++++++.++.+ ..+.+||+.+.+
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~-~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGA-GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCc-EEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence 8887766532111 001111 11111 34566666644 458899987654
No 477
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.29 E-value=35 Score=26.72 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=30.9
Q ss_pred EEEEeeCCCeEEEEECCCCc--eeEEeeCCcccEEEEEECCCCCeEEE
Q 021247 74 IAASASLDSFVRVFDVDTNA--SIATLEASPSEVWQMQFDPKGTTLAV 119 (315)
Q Consensus 74 ~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~ 119 (315)
.|..+.....|.+|++.... ...++. .-+.|..+.++..|.+++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEE
Confidence 33333556779999998433 334444 3478999999999998754
No 478
>PLN02153 epithiospecifier protein
Probab=73.50 E-value=56 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCCEEEEecCC-----------CcEEEEEcccceee
Q 021247 169 DGRRIACGSMD-----------GTISVFDVTRAKFL 193 (315)
Q Consensus 169 ~~~~l~~~s~d-----------g~i~i~d~~~~~~~ 193 (315)
+++.++.|+.+ ..+.+||+.+.+..
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 45556666643 24778898876654
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.11 E-value=71 Score=28.76 Aligned_cols=155 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCEEEEe---eCCCeEEEEECCCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCC
Q 021247 70 PSGIIAASA---SLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRP 146 (315)
Q Consensus 70 ~~g~~l~s~---~~d~~i~~w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 146 (315)
.+|-++++. ...+...+.| ..|..+..+.........+...++|..++... ..+..+|.- ++.+..+.++..
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~-G~v~~~~~l~~~ 187 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLL-GKVIWEYDLPGG 187 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT---EEEEEE--TT
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCC-CCEEEeeecCCc
Q ss_pred CCCCCCccCCCCcce----EEEEECCCCCEEEEec--------------CCCcEEEEEcccceeeeeecCCccc------
Q 021247 147 EGLKPTDKSSSKKFV----LSVAWSPDGRRIACGS--------------MDGTISVFDVTRAKFLHHLEGHFMP------ 202 (315)
Q Consensus 147 ~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~s--------------~dg~i~i~d~~~~~~~~~~~~~~~~------ 202 (315)
. ..+..-|+|++|+.+. .|. |..+| .+++.+..+..-.--
T Consensus 188 --------------~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 188 --------------YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp --------------EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--T
T ss_pred --------------ccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCccccc
Q ss_pred ---------------------eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEEeeccccc
Q 021247 203 ---------------------VRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASW 245 (315)
Q Consensus 203 ---------------------v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 245 (315)
++++.+.+.++.+++|+-.-..|...|.+++++.-.+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=73.01 E-value=58 Score=27.68 Aligned_cols=148 Identities=13% Similarity=0.178 Sum_probs=81.4
Q ss_pred ceEEEEECCCCCEEEEecCCCcEEE-EEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEE
Q 021247 160 FVLSVAWSPDGRRIACGSMDGTISV-FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTA 238 (315)
Q Consensus 160 ~i~~~~~~~~~~~l~~~s~dg~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 238 (315)
.+..+.+.|++.+++++. .|.+.. +|-...............++++.+.| +++.++. +..|.+.+=....+..-..
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLESWSK 250 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCcccc
Confidence 477889999887766654 454432 23221122222233445778888887 4455444 4556654322333221111
Q ss_pred ee----cccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccc---cccceEEEEEeeCCCEEEEEeCCCcEEE
Q 021247 239 MS----GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTN---HTDQVWGVSFRPLGGRVVSVSDDKSISL 311 (315)
Q Consensus 239 ~~----~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~i 311 (315)
.. .-...+.++.+.|++..++ ++.+|.|. ...+.++.++.... -......+.|..++ ..+.+|..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KGFVLGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC-ceEEECCCceEEE
Confidence 11 1123477888998877555 55677654 34454555444322 12357777777655 4566888888876
Q ss_pred ee
Q 021247 312 YE 313 (315)
Q Consensus 312 ~~ 313 (315)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 65
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=72.88 E-value=16 Score=31.94 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=86.9
Q ss_pred EeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCccee-eeecCCCCCCCCCCccCCCCcceE-EEEECCCCCEEE
Q 021247 97 TLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLI-ATLSIPRPEGLKPTDKSSSKKFVL-SVAWSPDGRRIA 174 (315)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~ 174 (315)
.+......+..+-..|+++.+++-.+ .++.++++.+.... .++.-..+ + .....|+ .+..-..|.-++
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dsp-g-------~~~~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSP-G-------DSRHQVTEQLYLLSGGFSLL 284 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCC-C-------chHHHHHHHHHHHhCceeEE
Confidence 34445566777888999997766544 57777776542111 01100000 0 0001111 111223456788
Q ss_pred EecCCCcEEEE-Eccccee--ee---eecCCccceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCeeEEEeecccccEE
Q 021247 175 CGSMDGTISVF-DVTRAKF--LH---HLEGHFMPVRSLVYSP-VDPRVLFSASDDTHVHMYDAEGKSLVTAMSGHASWVL 247 (315)
Q Consensus 175 ~~s~dg~i~i~-d~~~~~~--~~---~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 247 (315)
+++.||.|.-| |.+.... .. .++-...++..+ .| .+.+-+++-...|.+.++.....+.+..-. -...+.
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~ 361 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQ 361 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcc
Confidence 88899988766 5543221 11 111111122111 12 234456677777887776654433322111 122455
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCccce
Q 021247 248 SVDASPDGAAITTGSSDRTVKLWDLNMRAA 277 (315)
Q Consensus 248 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 277 (315)
-+++||.+.++++- ..|.|+++.++++.+
T Consensus 362 ~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 362 LVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeeCcccchheee-cCCceEEEEecCCCC
Confidence 68899999888764 456799998876544
No 482
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.86 E-value=23 Score=23.36 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=27.5
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEE
Q 021247 219 ASDDTHVHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTG 261 (315)
Q Consensus 219 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 261 (315)
+..+|.+..||+.+++....+.+ -...+.+++++++..|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 34567889999998865444443 3467899999999966554
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=72.50 E-value=71 Score=28.49 Aligned_cols=104 Identities=12% Similarity=0.216 Sum_probs=58.9
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEEe----e-cccccEEEEEEcCCC------CeEEEEe-----
Q 021247 201 MPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKS--LVTAM----S-GHASWVLSVDASPDG------AAITTGS----- 262 (315)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~----~-~~~~~i~~~~~~~~~------~~l~s~~----- 262 (315)
...+.|+|.| ++++|++--..|.|++++..++. .+..+ . ........|+++|+- .+|...-
T Consensus 30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 3568899998 56777766657999999865432 22111 1 125668899999874 2333321
Q ss_pred -----CCCcEEEEecCcc--------ceehccc---ccccceEEEEEeeCCCEEEEEeCCC
Q 021247 263 -----SDRTVKLWDLNMR--------AAMQSMT---NHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 263 -----~d~~i~iwd~~~~--------~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
....|.-|.+... ..+..+. .|. -..++|.|||...++.|+.+
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCCC
Confidence 1233444544311 1111121 232 33578999998777777653
No 484
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=71.35 E-value=58 Score=26.99 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=88.2
Q ss_pred CeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCC-----CE-EEEecCCCcEEEEEcccceeeeeecC
Q 021247 125 ASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDG-----RR-IACGSMDGTISVFDVTRAKFLHHLEG 198 (315)
Q Consensus 125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~-l~~~s~dg~i~i~d~~~~~~~~~~~~ 198 (315)
-.|.+||+.+.+.++++.++.... .....+..+.+.... .+ .++-+..+.|.++|+.+++....+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~-------~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIA-------PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS--------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCcEEEEEECChHHc-------ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 367789999999999988765421 134567788887622 22 24445566899999998887655543
Q ss_pred Ccc-------------------ceEEEEEcCC--CCcEEEEEe-CCCeEEEEeC---CCC-----e----eEEEeecccc
Q 021247 199 HFM-------------------PVRSLVYSPV--DPRVLFSAS-DDTHVHMYDA---EGK-----S----LVTAMSGHAS 244 (315)
Q Consensus 199 ~~~-------------------~v~~~~~~~~--~~~~l~s~~-~d~~i~~wd~---~~~-----~----~~~~~~~~~~ 244 (315)
+.. .+..++.+|. +++.|.-.. ...+++--.. +.. . .+..+.....
T Consensus 107 ~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~ 186 (287)
T PF03022_consen 107 SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS 186 (287)
T ss_dssp GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---
T ss_pred CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCC
Confidence 221 1223333321 111221111 1111111110 000 0 1111111123
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEecCcc---ceehcccc-c--ccceEEEEEee--CCCEEEE
Q 021247 245 WVLSVDASPDGAAITTGSSDRTVKLWDLNMR---AAMQSMTN-H--TDQVWGVSFRP--LGGRVVS 302 (315)
Q Consensus 245 ~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~-~--~~~v~~~~~s~--~~~~l~s 302 (315)
....++.+++|.++++--..+.|..|+.... +..+.+.. . -..+.++++.+ +|...+.
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 4456788999998899999999999998751 11222211 1 24677888888 6654444
No 485
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=70.07 E-value=58 Score=26.44 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=39.6
Q ss_pred CEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCC--CCcEEEEEeCCCeEEEE
Q 021247 171 RRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV--DPRVLFSASDDTHVHMY 228 (315)
Q Consensus 171 ~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~w 228 (315)
..|+.|+++|.|++.|......+..+.-..-++.-....-. -+..++.++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 47999999999999998877777666544444432222211 24568888888887753
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.40 E-value=25 Score=30.92 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=79.7
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceee-eee-cCCcc----ceE-EEEEcCCCCcEEEEEeCCCeEEEE-eCCC
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFL-HHL-EGHFM----PVR-SLVYSPVDPRVLFSASDDTHVHMY-DAEG 232 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~~l~s~~~d~~i~~w-d~~~ 232 (315)
+..+-..|+|+++..-+. ..+.++++.+.... .++ ....+ .|+ ....- .++.-++.+..||-|.-| |.+.
T Consensus 223 v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred hHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCceeeeeeeec
Confidence 556778899998876654 67888887543221 111 11011 111 00001 245567788888888776 4332
Q ss_pred C-e-eEEEeec---ccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCC
Q 021247 233 K-S-LVTAMSG---HASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDK 307 (315)
Q Consensus 233 ~-~-~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 307 (315)
. . .....+. ....+.-+.-..+.+-+++-..+|++.++.....+.+... .--+.+.-+++||++.++++-. .|
T Consensus 301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~Sp~~~~Ll~e~-~g 378 (733)
T COG4590 301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMSPNQAYLLSED-QG 378 (733)
T ss_pred CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhhcCcceeeeCcccchheeec-CC
Confidence 1 1 1111111 1122222222223345666777788777765444433221 2223566789999999887653 47
Q ss_pred cEEEeec
Q 021247 308 SISLYEY 314 (315)
Q Consensus 308 ~i~i~~~ 314 (315)
.|+++.+
T Consensus 379 ki~~~~l 385 (733)
T COG4590 379 KIRLAQL 385 (733)
T ss_pred ceEEEEe
Confidence 7888765
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=69.31 E-value=84 Score=28.05 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=57.4
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEccccee--eeeec-----CCccceEEEEEcCCC------CcEEEEEe-------
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKF--LHHLE-----GHFMPVRSLVYSPVD------PRVLFSAS------- 220 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~--~~~~~-----~~~~~v~~~~~~~~~------~~~l~s~~------- 220 (315)
...|+|.|+|+.|++--..|.|++++..++.. +..+. ........++++|+- ..+.++-+
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence 56899999998777665569999998654432 21111 124567889999853 12333321
Q ss_pred --CCCeEEEEeCCCC-------e-eEEEe---ecccccEEEEEEcCCCCeEEEEeCC
Q 021247 221 --DDTHVHMYDAEGK-------S-LVTAM---SGHASWVLSVDASPDGAAITTGSSD 264 (315)
Q Consensus 221 --~d~~i~~wd~~~~-------~-~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d 264 (315)
....|..|..... + ++..+ ..|.+ ..|.|.|+|.+.++.+..
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence 1234555554311 1 11111 12433 367899999876655543
No 488
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=68.47 E-value=1.4e+02 Score=30.15 Aligned_cols=138 Identities=17% Similarity=0.285 Sum_probs=72.3
Q ss_pred CEEEEec---------CCCcEEEEEc-----ccceee-----eee--cCCccceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 021247 171 RRIACGS---------MDGTISVFDV-----TRAKFL-----HHL--EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 229 (315)
Q Consensus 171 ~~l~~~s---------~dg~i~i~d~-----~~~~~~-----~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 229 (315)
.+|++|+ ..|.+.++|+ +.+++. ..+ +.-+++|..++=- .++ |+++ ...+|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSS-QGQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEc-cCcEEEEEE
Confidence 4677775 2578999996 233221 111 1234566555422 343 3333 345789998
Q ss_pred CC-CCeeEEE-eecccccEEEEEEcCCCCeEEEEeCCCcEEEEecCccc-eehcccc--cccceEEEEEeeCCCE--EEE
Q 021247 230 AE-GKSLVTA-MSGHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA-AMQSMTN--HTDQVWGVSFRPLGGR--VVS 302 (315)
Q Consensus 230 ~~-~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~--~~~~v~~~~~s~~~~~--l~s 302 (315)
++ ...++.. +..-.-.+. ....-..+++.|.-=..|.+....... .+.-+.. ..-.+.++.|--+|.. ++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~--s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVH--SMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred eccCCcceeeEEeccceeEE--ehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 84 3333211 111111122 112223456666655666666554321 1221221 1235788889888875 477
Q ss_pred EeCCCcEEEeec
Q 021247 303 VSDDKSISLYEY 314 (315)
Q Consensus 303 ~~~d~~i~i~~~ 314 (315)
+..|++|++|-|
T Consensus 1201 sDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1201 SDADRNIHVYMY 1212 (1366)
T ss_pred EcCCCcEEEEEe
Confidence 888999999976
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=68.13 E-value=18 Score=33.89 Aligned_cols=66 Identities=12% Similarity=0.271 Sum_probs=40.3
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEecCccceehcccccccceEEEEEeeCCCEEEEEeCCCcEEEe
Q 021247 244 SWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLY 312 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i~ 312 (315)
..++++.-+|.++.++.++.||.|++|+.-.++..+.-. ...+-..+.|... -|++...|+.+.-|
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnh--gl~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNH--GLVTATSDRRALAW 80 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeecc--ceEEEeccchhhee
Confidence 346677888999999999999999999987654322111 1123334445432 24555555554444
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=67.87 E-value=75 Score=26.88 Aligned_cols=152 Identities=13% Similarity=0.216 Sum_probs=85.6
Q ss_pred eEEEEECCCCCEEEEecCCCc------EEEEEccc--c--eeee-----eecCCcc--------ceEEEEEcCCCCcEEE
Q 021247 161 VLSVAWSPDGRRIACGSMDGT------ISVFDVTR--A--KFLH-----HLEGHFM--------PVRSLVYSPVDPRVLF 217 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~------i~i~d~~~--~--~~~~-----~~~~~~~--------~v~~~~~~~~~~~~l~ 217 (315)
+..+.+.+++..+++-+.+|. ++.+++.. + ..+. .+....+ -.-++++ +.++.+++
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~~~i 100 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGSFWI 100 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCCEEE
Confidence 678999876666777777777 66666543 1 0011 1111111 2236677 44677777
Q ss_pred EEeCC------CeEEEEeCCCCeeEEEe---------------ecccccEEEEEEcCCCCeEEEEeC-----CC------
Q 021247 218 SASDD------THVHMYDAEGKSLVTAM---------------SGHASWVLSVDASPDGAAITTGSS-----DR------ 265 (315)
Q Consensus 218 s~~~d------~~i~~wd~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~s~~~-----d~------ 265 (315)
+.=.+ ..|..++.. +.....+ ...+..+-+++++|+|+.|+++-. |+
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 77667 889999977 3332221 113456789999999996665533 22
Q ss_pred ---cEEEEecC--c-cceehc----ccc-----cccceEEEEEeeCCCEEEE-----EeCCCcEEEeec
Q 021247 266 ---TVKLWDLN--M-RAAMQS----MTN-----HTDQVWGVSFRPLGGRVVS-----VSDDKSISLYEY 314 (315)
Q Consensus 266 ---~i~iwd~~--~-~~~~~~----~~~-----~~~~v~~~~~s~~~~~l~s-----~~~d~~i~i~~~ 314 (315)
.++++... . +..... +.. ....+..+.+-++++.|+- .+....++||.+
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 15565443 3 222222 221 2346778888888886653 113445666543
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.26 E-value=33 Score=22.61 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=34.1
Q ss_pred EecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 021247 175 CGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 230 (315)
Q Consensus 175 ~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 230 (315)
.+..+|++.-||+.+++...-+.+ -.-.+.+++++++..++++-..-..|+-|-+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 345678899999988875433332 2245889999977667777776666654444
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=67.11 E-value=23 Score=28.49 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=47.8
Q ss_pred EEEEeCCCCeeEEEeecccccEEEEEEcCCCCeEEEEeCC---CcEEEEecCc---cceeh----cccccccceEEEEEe
Q 021247 225 VHMYDAEGKSLVTAMSGHASWVLSVDASPDGAAITTGSSD---RTVKLWDLNM---RAAMQ----SMTNHTDQVWGVSFR 294 (315)
Q Consensus 225 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~i~iwd~~~---~~~~~----~~~~~~~~v~~~~~s 294 (315)
-.+||+.+.+...........+.+-.+-++|++|.+|+.. ..+++++-.. ...+. .+. ....--++..-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 3468877765543333334445556678899999988762 3488887543 11111 111 12333355666
Q ss_pred eCCCEEEEEeCC
Q 021247 295 PLGGRVVSVSDD 306 (315)
Q Consensus 295 ~~~~~l~s~~~d 306 (315)
|||+.|+.||..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 899988888776
No 493
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=67.11 E-value=90 Score=27.54 Aligned_cols=198 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred ccceEEEEEeecCCCC-CcEEEEeeCCCcEEEEcCCCCcceeeccccccceEEEEeCCCCCEEEEeeCCCeEEEEEC---
Q 021247 14 EESVWAVTWVPATETR-PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDV--- 89 (315)
Q Consensus 14 ~~~v~~v~~~~~~~~~-~~~l~sgs~d~~v~~w~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~~~d~~i~~w~~--- 89 (315)
+..-+.+...|.+... ..++..-|.||.+.+++-+..-....++. ..-.-.+.+.+.-..+++++.+..+.-+..
T Consensus 128 ~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 128 QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDL 206 (418)
T ss_pred ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHh
Q ss_pred --------------------CCCceeEEeeCCcccEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCC
Q 021247 90 --------------------DTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL 149 (315)
Q Consensus 90 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 149 (315)
+.-..-.++......+.-....-.+....+..-....+.+.+. +++......+.-..
T Consensus 207 a~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p-- 283 (418)
T PF14727_consen 207 ASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNP-- 283 (418)
T ss_pred hhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCce--
Q ss_pred CCCccCCCCcceEEEEECC----CCC---EEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCC
Q 021247 150 KPTDKSSSKKFVLSVAWSP----DGR---RIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 222 (315)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~----~~~---~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 222 (315)
...+.|.. +++ .++.++.++.+.+|.=.+..+...+ .|..-.-.++..+.-+.++++-+.+
T Consensus 284 -----------~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l-~~~PVal~v~~~~~~~G~IV~Ls~~ 351 (418)
T PF14727_consen 284 -----------SCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL-PHVPVALSVANFNGLKGLIVSLSDE 351 (418)
T ss_pred -----------eeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC-CCCCEEEEecccCCCCceEEEEcCC
Q ss_pred CeEEE
Q 021247 223 THVHM 227 (315)
Q Consensus 223 ~~i~~ 227 (315)
|.+.+
T Consensus 352 G~L~v 356 (418)
T PF14727_consen 352 GQLSV 356 (418)
T ss_pred CcEEE
No 494
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.00 E-value=15 Score=18.31 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=18.6
Q ss_pred EEEEeeCCCeEEEEECCCCceeEE
Q 021247 74 IAASASLDSFVRVFDVDTNASIAT 97 (315)
Q Consensus 74 ~l~s~~~d~~i~~w~~~~~~~~~~ 97 (315)
.++.++.++.+..+|..+++.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 566678889999999988876543
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=65.01 E-value=49 Score=31.46 Aligned_cols=62 Identities=8% Similarity=0.209 Sum_probs=37.2
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCC
Q 021247 161 VLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 223 (315)
Q Consensus 161 i~~~~~~~~~~~l~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 223 (315)
....+|+.....++.+ ..+.+++|-..+-.+..+..-.-..+.-++|+|.....++-.+...
T Consensus 298 ~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 298 AFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred hhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCe
Confidence 4566777655544443 5678999987655554444333345667889987665554444333
No 496
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=64.47 E-value=89 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=14.3
Q ss_pred CCCEEEEeeCC-----------CeEEEEECCCCc
Q 021247 71 SGIIAASASLD-----------SFVRVFDVDTNA 93 (315)
Q Consensus 71 ~g~~l~s~~~d-----------~~i~~w~~~~~~ 93 (315)
++.+.+.|+.+ ..+..||..++.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 56677777653 246667776654
No 497
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=63.12 E-value=99 Score=26.63 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=67.8
Q ss_pred cEEEEEECCCCCeEEEEecCCCeEEEEecCCcceeeeecCCCCCCCCCCccCCCCcceEEEEECCCCC------------
Q 021247 104 EVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGR------------ 171 (315)
Q Consensus 104 ~v~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 171 (315)
.-..++|+..+..++++ |....+|.+.-...+.....++.++.+. .+...+..+++|.
T Consensus 116 RPLGl~f~~~ggdL~Va---DAYlGL~~V~p~g~~a~~l~~~~~G~~~-------kf~N~ldI~~~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA---DAYLGLLKVGPEGGLAELLADEAEGKPF-------KFLNDLDIDPEGVVYFTDSSSKYDR 185 (376)
T ss_pred CcceEEeccCCCeEEEE---ecceeeEEECCCCCcceeccccccCeee-------eecCceeEcCCCeEEEeccccccch
Confidence 45688999988666654 5666666654322222221111111110 1122333333221
Q ss_pred --EE---EEecCCCcEEEEEcccceeeeeecCCccceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEEeeccc
Q 021247 172 --RI---ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSL---VTAMSGHA 243 (315)
Q Consensus 172 --~l---~~~s~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~ 243 (315)
.+ +.+..+|++.-||..+... ..+...-.-.+.++.+|++..++++-..-..|+-|=+++.+. --...+-.
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LP 264 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLP 264 (376)
T ss_pred hheEEeeecCCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCC
Confidence 22 2344577888888765432 122222234467888986666666655554454333332211 00011123
Q ss_pred ccEEEEEEcCCCCeE
Q 021247 244 SWVLSVDASPDGAAI 258 (315)
Q Consensus 244 ~~i~~~~~~~~~~~l 258 (315)
+..-.+..+++|.+.
T Consensus 265 G~PDNIR~~~~G~fW 279 (376)
T KOG1520|consen 265 GYPDNIRRDSTGHFW 279 (376)
T ss_pred CCCcceeECCCCCEE
Confidence 333455667777643
No 498
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.97 E-value=23 Score=18.67 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=21.7
Q ss_pred EEecCCCeEEEEecCCcceeeeecCC
Q 021247 119 VAGGGSASVKLWDTATWNLIATLSIP 144 (315)
Q Consensus 119 ~~~~~d~~i~~~d~~~~~~~~~~~~~ 144 (315)
+.+..++.+.-.|.++++.+..+...
T Consensus 4 ~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 4 YVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 34588999999999999999888654
No 499
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=60.84 E-value=77 Score=29.45 Aligned_cols=79 Identities=9% Similarity=0.189 Sum_probs=48.2
Q ss_pred eeEEEeecccccEEEEEEcCCCCeEEEEeCCCcE-EEEecCc---cceehc----cccc----ccceEEEEEeeCCCEEE
Q 021247 234 SLVTAMSGHASWVLSVDASPDGAAITTGSSDRTV-KLWDLNM---RAAMQS----MTNH----TDQVWGVSFRPLGGRVV 301 (315)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i-~iwd~~~---~~~~~~----~~~~----~~~v~~~~~s~~~~~l~ 301 (315)
..+..+..|....-.+.|+++++.+.++...+.. .++-+.- +..+.. ...| ...|..++|+.+..+++
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsrw~A 562 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLA 562 (788)
T ss_pred ceeEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchhhhh
Confidence 3445555677788889999999999998887765 5554432 111111 1111 23577888888876666
Q ss_pred EEeCCCcEEEe
Q 021247 302 SVSDDKSISLY 312 (315)
Q Consensus 302 s~~~d~~i~i~ 312 (315)
-....++-.+|
T Consensus 563 ~~t~~~TthVf 573 (788)
T KOG2109|consen 563 ITTNHATTHVF 573 (788)
T ss_pred hhhcCCceeee
Confidence 54454554444
No 500
>PLN02153 epithiospecifier protein
Probab=60.72 E-value=1e+02 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=15.9
Q ss_pred CCCEEEEecCC-----CcEEEEEcccceee
Q 021247 169 DGRRIACGSMD-----GTISVFDVTRAKFL 193 (315)
Q Consensus 169 ~~~~l~~~s~d-----g~i~i~d~~~~~~~ 193 (315)
+++.++.|+.+ ..+.+||+.+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 35566666643 25788998876653
Done!