BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021248
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37
Length = 328
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 148/316 (46%), Positives = 205/316 (64%), Gaps = 26/316 (8%)
Query: 3 VKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
+G QV +PV+GLIFLFKW+PGE+ V++D +FFA QVINN
Sbjct: 27 CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 86
Query: 62 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
ACATQAI+S+LLNC D+ +G LS+ KEF+++F KGLA++NSD IR HNSFAR
Sbjct: 87 ACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQ 146
Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
+ F + K + K++D +HF+SY+PV+G LYELDGL+EGPI LG C DW+ V+
Sbjct: 147 QXF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVR 201
Query: 180 PVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKT 239
PVI++RI++YS+ EIRFNL A++ +RK +Y ++ E QR QLA +
Sbjct: 202 PVIEKRIQKYSEGEIRFNLXAIVSDRKXIYEQKIAELQR-------QLAE-------EPX 247
Query: 240 SFEALNKSLSEVNAGIEGATEKILMEEE--KFKKWRTENIRRKHNYIPFLFNFLKILAEK 297
+ N LS + + E A + L+EEE K K+++ ENIRRKHNY+PF+ LK LAE
Sbjct: 248 DTDQGNSXLSAIQS--EVAKNQXLIEEEVQKLKRYKIENIRRKHNYLPFIXELLKTLAEH 305
Query: 298 KQLKPLIEKAKQKTSS 313
+QL PL+EKAK+K ++
Sbjct: 306 QQLIPLVEKAKEKQNA 321
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|C Chain C, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|D Chain D, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 245
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 152/219 (69%), Gaps = 8/219 (3%)
Query: 3 VKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
+G QV +PV+GLIFLFKW+PGE+ V++D +FFA QVINN
Sbjct: 32 CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 91
Query: 62 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
ACATQAI+S+LLNC D+ +G LS+ KEF+++F +KGLA++NSD IR HNSFAR
Sbjct: 92 ACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQ 151
Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
+ F + K + K++D +HF+SY+PV+G LYELDGL+EGPI LG C DW+ V+
Sbjct: 152 QMF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVR 206
Query: 180 PVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQR 218
PVI++RI++YS+ EIRFNLMA++ +RK +Y ++ E QR
Sbjct: 207 PVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 245
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37
Length = 228
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 144/207 (69%), Gaps = 8/207 (3%)
Query: 3 VKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
+G QV +PV+GLIFLFKW+PGE+ V++D +FFA QVINN
Sbjct: 27 CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 86
Query: 62 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
A ATQAI+S+LLNC D+ +G LS+ KEF+++F +KGLA++NSD IR HNSFAR
Sbjct: 87 AAATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQ 146
Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
+ F + K + K++D +HF+SY+PV+G LYELDGL+EGPI LG C DW+ V+
Sbjct: 147 QMF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVR 201
Query: 180 PVIQERIERYSKSEIRFNLMAVIKNRK 206
PVI++RI++YS+ EIRFNLMA++ +RK
Sbjct: 202 PVIEKRIQKYSEGEIRFNLMAIVSDRK 228
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
pdb|3TB3|B Chain B, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
Length = 229
Score = 213 bits (543), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 143/206 (69%), Gaps = 8/206 (3%)
Query: 3 VKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
+G QV +PV+GLIFLFKW+PGE+ V++D +FFA QVINN
Sbjct: 29 CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 88
Query: 62 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
A ATQAI+S+LLNC D+ +G LS+ KEF+++F +KGLA++NSD IR HNSFAR
Sbjct: 89 AAATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQ 148
Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
+ F + K + K++D +HF+SY+PV+G LYELDGL+EGPI LG C DW+ V+
Sbjct: 149 QMF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVR 203
Query: 180 PVIQERIERYSKSEIRFNLMAVIKNR 205
PVI++RI++YS+ EIRFNLMA++ +R
Sbjct: 204 PVIEKRIQKYSEGEIRFNLMAIVSDR 229
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RII|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 233
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 142/207 (68%), Gaps = 8/207 (3%)
Query: 3 VKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINN 61
+G QV +PV+GLIFLFKW+PGE+ V++D +FFA QVINN
Sbjct: 32 CRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 91
Query: 62 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARP 119
A ATQAI+S+LLNC D+ +G LS+ KEF+++F KGLA++NSD IR HNSFAR
Sbjct: 92 ASATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQ 151
Query: 120 EPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQ 179
+ F + K + K++D +HF+SY+PV+G LYELDGL+EGPI LG C DW+ V+
Sbjct: 152 QXF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVR 206
Query: 180 PVIQERIERYSKSEIRFNLMAVIKNRK 206
PVI++RI++YS+ EIRFNL A++ +RK
Sbjct: 207 PVIEKRIQKYSEGEIRFNLXAIVSDRK 233
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|C Chain C, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1UCH|A Chain A, Deubiquitinating Enzyme Uch-L3 (Human) At 1.8 Angstrom
Resolution
Length = 230
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 22/191 (11%)
Query: 23 RPVYGLIFLF----KWRPGEKDDRVVIK----DPNPNLFFASQVINNACATQAILSILLN 74
RPV ++ LF K+ ++ IK D +++F Q I+NAC T ++ + N
Sbjct: 47 RPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIAN 106
Query: 75 CPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG 131
D + G L K E + + PE + + N DAIR H + A + +A
Sbjct: 107 NKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEG-----QTEAPS 161
Query: 132 KDDDV-YHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYS 190
D+ V HFI+ + VDG LYELDG K PI+ G + D L+ V ++ +ER
Sbjct: 162 IDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETS----DETLLEDAIEVCKKFMER-D 216
Query: 191 KSEIRFNLMAV 201
E+RFN +A+
Sbjct: 217 PDELRFNAIAL 227
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy-Te Hydrolase L1
pdb|3IRT|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy-Te Hydrolase L1
pdb|3KVF|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy
Te Hydrolase L1 Bound To Ubiquitin Vinylmethylester
Length = 228
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 24 PVYGLIFLFKWRPGEKDDR------VVIKDPNPNLFFASQVINNACATQAILSILLNCPD 77
P L+ LF ++ R + ++ +P ++F Q I N+C T ++ + N D
Sbjct: 50 PACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTMGLIHAVANNQD 109
Query: 78 IDIGPELSKLKEF---TKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 134
+ S LK+F T+ PE + ++AI+AAH++ V +E + D
Sbjct: 110 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDA-------VAQEGQCRVDDK 162
Query: 135 DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEI 194
+HFI + VDG LYELDG P++ G + L+ V +E ER + E+
Sbjct: 163 VNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQGEV 217
Query: 195 RFNLMAVIK 203
RF+ +A+ K
Sbjct: 218 RFSAVALCK 226
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant
Length = 231
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 24 PVYGLIFLFKWRPGEKDDR------VVIKDPNPNLFFASQVINNACATQAILSILLNCPD 77
P L+ LF ++ R + ++ +P ++F Q I N+C T ++ + N D
Sbjct: 45 PACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQD 104
Query: 78 IDIGPELSKLKEF---TKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 134
+ S LK+F T+ PE + ++AI+AAH++ V +E + D
Sbjct: 105 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDA-------VAQEGQCRVDDK 157
Query: 135 DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEI 194
+HFI + VDG LYELDG P++ G + L+ V +E ER + E+
Sbjct: 158 VNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQGEV 212
Query: 195 RFNLMAVIK 203
RF+ +A+ K
Sbjct: 213 RFSAVALCK 221
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase
L1 (uch-l1)
pdb|2ETL|B Chain B, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase
L1 (uch-l1)
pdb|3KW5|A Chain A, Crystal Structure Of Ubiquitin Carboxy Terminal Hydrolase
L1 Ubiquitin Vinylmethylester
pdb|4DM9|A Chain A, The Crystal Structure Of Ubiquitin Carboxy-Terminal
Hydrolase L1 (Uchl1) Bound To A Tripeptide Fluoromethyl
Ketone Z-Vae(Ome)-Fmk
pdb|4DM9|B Chain B, The Crystal Structure Of Ubiquitin Carboxy-Terminal
Hydrolase L1 (Uchl1) Bound To A Tripeptide Fluoromethyl
Ketone Z-Vae(Ome)-Fmk
Length = 228
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 24 PVYGLIFLFKWRPGEKDDR------VVIKDPNPNLFFASQVINNACATQAILSILLNCPD 77
P L+ LF ++ R + ++ +P ++F Q I N+C T ++ + N D
Sbjct: 50 PACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQD 109
Query: 78 IDIGPELSKLKEF---TKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 134
+ S LK+F T+ PE + ++AI+AAH++ V +E + D
Sbjct: 110 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDA-------VAQEGQCRVDDK 162
Query: 135 DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEI 194
+HFI + VDG LYELDG P++ G + L+ V +E ER + E+
Sbjct: 163 VNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQGEV 217
Query: 195 RFNLMAVIK 203
RF+ +A+ K
Sbjct: 218 RFSAVALCK 226
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy
T Hydrolase L1 Bound To Ubiquitin Vinylmethylester
Length = 228
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 49 NPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEF---TKNFPPELKGLAINN 105
+P ++F Q I N+C T ++ + N D + S LK+F T+ PE +
Sbjct: 81 SPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEK 140
Query: 106 SDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPC 165
++AI+AAH++ V +E + D +HFI + VDG LYELDG P++
Sbjct: 141 NEAIQAAHDA-------VAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVN---- 189
Query: 166 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 203
G + L+ V +E ER + E+RF+ +A+ K
Sbjct: 190 HGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCK 226
>pdb|2WDT|A Chain A, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|C Chain C, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WE6|A Chain A, Crystal Structure Of Plasmodium Falciparum Ubiquitin
Carboxyl-Terminal Hydrolase 3 (Uchl3)
pdb|2WE6|B Chain B, Crystal Structure Of Plasmodium Falciparum Ubiquitin
Carboxyl-Terminal Hydrolase 3 (Uchl3)
Length = 232
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 23 RPVYGLIFLFKWRPG-----EKDDRVVIKDPNPNLFFASQVINNACATQAILSI---LLN 74
+PV +IFL+ +D+ +K+ N++F Q I N+C T A+L + L N
Sbjct: 47 QPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVWFIKQYIPNSCGTIALLHLYGNLRN 106
Query: 75 CPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 134
++D L E +G + N+ +I H+ F + +DD
Sbjct: 107 KFELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEFC---------GQVENRDD 157
Query: 135 --DV-YHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSK 191
DV HFI ++ ++G + ELDG K+ P ++ T G ++L +IQ++ K
Sbjct: 158 ILDVDTHFIVFVQIEGKIIELDGRKDHP-TVHCFTNGD---NFLYDTGKIIQDKFIEKCK 213
Query: 192 SEIRFNLMAVIKN 204
++RF+ +AVI N
Sbjct: 214 DDLRFSALAVIPN 226
>pdb|1CMX|A Chain A, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|C Chain C, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
Length = 235
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 16/174 (9%)
Query: 23 RPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDI-DIG 81
RPV ++ LF K + ++ + Q + NAC AIL L N + + G
Sbjct: 50 RPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPG 109
Query: 82 PELSKLKEFTKNFPPELKGLAINNSD-----AIRAAHNSFARPEPFVPEEQKAAGKDDDV 136
+L + + +D I+ +F+ + PE D
Sbjct: 110 SDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATA-----DTN 164
Query: 137 YHFISYIPVDGVLYELDGLK-EGPISLGPCTGGQGDMDWLQMVQPVIQERIERY 189
H+I+Y+ +G ++ELDG GP+ LG D+ + Q +++ R+ Y
Sbjct: 165 LHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDL----IEQELVRVRVASY 214
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 148 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR-- 205
+LYEL ++L GG+G L++ + V+Q R S + +NL IK++
Sbjct: 394 LLYELCAKAGAEVALSWAKGGEG---GLELARKVLQTLESRPSNFHVLYNLDLSIKDKIA 450
Query: 206 ---KELYTAELKEFQRKRERILQQLASL 230
E+Y A+ + + ++ +Q+ SL
Sbjct: 451 KIATEIYGADGVNYTAEADKAIQRYESL 478
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 148 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR-- 205
+LYEL ++L GG+G L++ + V+Q R S + +NL IK++
Sbjct: 394 LLYELCAKAGAEVALSWAKGGEG---GLELARKVLQTLESRPSNFHVLYNLDLSIKDKIA 450
Query: 206 ---KELYTAELKEFQRKRERILQQLASL 230
E+Y A+ + + ++ +Q+ SL
Sbjct: 451 KIATEIYGADGVNYTAEADKAIQRYESL 478
>pdb|2DOS|A Chain A, Structural Basis For The Recognition Of Lys48-Linked
Polyubiquitin Chain By The Josephin Domain Of Ataxin-3,
A Putative Deubiquitinating Enzyme
Length = 176
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 39 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 77
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 61 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 103
>pdb|2AGA|A Chain A, De-Ubiquitinating Function Of Ataxin-3: Insights From The
Solution Structure Of The Josephin Domain
Length = 190
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 39 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 77
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 61 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 103
>pdb|2JRI|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|1YZB|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3
Length = 182
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 39 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 77
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 56 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 98
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 166 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 225
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 63 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 121
Query: 226 QLASLQSERMVDKTSFEA 243
L Q +++VDKT A
Sbjct: 122 NLKDTQLQQIVDKTIINA 139
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 166 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 225
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 64 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 122
Query: 226 QLASLQSERMVDKTSFEA 243
L Q +++VDKT A
Sbjct: 123 NLKDTQLQQIVDKTIINA 140
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 166 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 225
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 49 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 107
Query: 226 QLASLQSERMVDKTSFEA 243
L Q +++VDKT A
Sbjct: 108 NLKDTQLQQIVDKTIINA 125
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 166 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 225
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 50 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 108
Query: 226 QLASLQSERMVDKTSFEA 243
L Q +++VDKT A
Sbjct: 109 NLKDTQLQQIVDKTIINA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,638,067
Number of Sequences: 62578
Number of extensions: 350083
Number of successful extensions: 961
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 32
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)