Query 021248
Match_columns 315
No_of_seqs 200 out of 671
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2778 Ubiquitin C-terminal h 100.0 1.2E-92 2.7E-97 653.6 23.1 293 1-312 20-316 (328)
2 PF01088 Peptidase_C12: Ubiqui 100.0 1.9E-64 4.1E-69 459.7 12.7 183 1-189 19-214 (214)
3 KOG1415 Ubiquitin C-terminal h 100.0 2.6E-60 5.7E-65 420.8 16.9 191 1-203 22-221 (222)
4 PF07888 CALCOCO1: Calcium bin 69.5 67 0.0014 33.8 11.9 30 133-167 86-115 (546)
5 PHA02744 hypothetical protein; 55.9 7 0.00015 31.2 1.5 12 135-146 5-16 (88)
6 KOG1103 Predicted coiled-coil 26.0 1.6E+02 0.0034 29.6 5.8 36 251-286 144-188 (561)
7 PF10146 zf-C4H2: Zinc finger- 24.9 4.9E+02 0.011 24.2 8.7 52 247-298 54-106 (230)
8 cd08065 MPN_eIF3h Mpr1p, Pad1p 23.8 2.5E+02 0.0054 26.4 6.6 26 255-280 226-255 (266)
9 PF09726 Macoilin: Transmembra 23.0 8.2E+02 0.018 26.6 11.0 53 246-298 545-603 (697)
10 CHL00044 rpl16 ribosomal prote 21.3 80 0.0017 27.0 2.5 22 134-155 88-109 (135)
11 PHA00447 lysozyme 20.5 88 0.0019 26.8 2.6 20 133-154 41-60 (142)
No 1
>KOG2778 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-92 Score=653.58 Aligned_cols=293 Identities=66% Similarity=1.059 Sum_probs=258.2
Q ss_pred CCCcccEEEEeecCChhhhhccCCceEEEEEeecCCCCccccccccCCCCCccchhhhhhhhhHHHHHHHhhhCCC--CC
Q 021248 1 MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCP--DI 78 (315)
Q Consensus 1 lGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i 78 (315)
|||+|+||+||||||.+.+..++|||||||||+|.+++++.+....+.-++||||||+|+|||||+|||++|+|+. +|
T Consensus 20 fgv~gvQVEElysLd~~~~~~~~piyGlIFLFKW~~ed~~~g~v~~D~~~niFFA~QvInNACATqAlLsvLlN~~~~~i 99 (328)
T KOG2778|consen 20 FGVKGVQVEELYSLDSDSLRPLRPIYGLIFLFKWIEEDKPAGSVIDDSVSNIFFAKQVINNACATQALLSVLLNCSHEDI 99 (328)
T ss_pred cCCCceeEeeeeccCcchhccCCCceeEEEEEEeccCCCCCcccccccccchhhhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 7999999999999999999999999999999999987666655555555689999999999999999999999984 69
Q ss_pred CCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCC--CCCCcceEEEEEeeCCeEEeecCCC
Q 021248 79 DIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG--KDDDVYHFISYIPVDGVLYELDGLK 156 (315)
Q Consensus 79 ~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~--~~~~~~HFI~fV~~~G~lyELDGlk 156 (315)
+||++|++||+||++|+|+.||.+|+|+++||.+|||||||.++.+++..+.. .++++||||+|||++|+||||||+|
T Consensus 100 dLG~tLs~~K~f~k~f~Pe~KGlal~Nse~Ir~~HNSfARp~~~~~~e~~a~~~~~~dd~yHFVsyvPI~g~lyELDGLk 179 (328)
T KOG2778|consen 100 DLGPTLSELKEFTKGFDPELKGLALGNSEEIRCAHNSFARPEPFRPEEVDAATSAKEDDVYHFVSYVPINGRLYELDGLK 179 (328)
T ss_pred chhhHHHHHHHHhhcCChhhcccccCCcHHHHHHhccccCCCCcchhhhhcccccccccceeEEEEEeeCCEEEeccCCc
Confidence 99999999999999999999999999999999999999999986654433222 3678999999999999999999999
Q ss_pred CCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 021248 157 EGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMV 236 (315)
Q Consensus 157 ~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~ 236 (315)
.|||+||+|.. +++|+++|+|||++||++|++++|||||||||+|++ ..+|..+++.++.|+.++...
T Consensus 180 e~PI~lg~~~~---eqeW~d~vrpVIqeRi~~ys~gEIrFNLMAvV~dRk---~a~l~~~~~~~e~l~~~l~~~------ 247 (328)
T KOG2778|consen 180 EGPIDLGPCEK---EQEWLDKVRPVIQERIQRYSEGEIRFNLMAVVPDRK---TAELKELQRKREILLQQLQKQ------ 247 (328)
T ss_pred cCCcccCCCCc---cHhHHHHHHHHHHHHHhhCCcceeEEEEEEEeccch---HHHHHHHHHHHHHHHHHHHhh------
Confidence 99999999986 269999999999999999999999999999999998 556666777777777766531
Q ss_pred cccchhHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhc
Q 021248 237 DKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTS 312 (315)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~La~~g~L~~l~~~a~~~~~ 312 (315)
........+++|+.++..|..|.+|+.+|+.||+||||||.||+++|+|.||++|+|.+++++||.|..
T Consensus 248 -------~~~~~~~~q~~ia~~~~~i~~e~~K~~~~k~en~rr~hny~pfl~ellk~lae~~~L~~~~~kak~~~~ 316 (328)
T KOG2778|consen 248 -------EATEADKEQSEIANLSSHIRPEDEKLKRYKKENIRRKHNYLPFLVELLKILAEEGQLAPLVEKAKPKSM 316 (328)
T ss_pred -------hccchhhhhhhhcccccccCcchhHhhhcchhhhhhhhcccHHHHHHHHHHhhhcchhhhhhhhcchhh
Confidence 011112256788888889999999999999999999999999999999999999999999999987654
No 2
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=100.00 E-value=1.9e-64 Score=459.73 Aligned_cols=183 Identities=51% Similarity=0.884 Sum_probs=154.9
Q ss_pred CCCcccEEEEeecCCh-hhhhcc-CCceEEEEEeecCCCCcccc------cc--ccCCCCCccchhhhhhhhhHHHHHHH
Q 021248 1 MQVKGVQVEELYSLDL-DSLNNL-RPVYGLIFLFKWRPGEKDDR------VV--IKDPNPNLFFASQVINNACATQAILS 70 (315)
Q Consensus 1 lGv~~~~f~DVysLD~-~~L~~l-~Pv~alIfLFp~~~~~~~~~------~~--~~~~~~~v~FakQtI~NACgT~AlLh 70 (315)
|||++++|+||||||+ ++|+++ +|||||||||||++..+..+ .. ....+++|||+||||+||||||||||
T Consensus 19 lGv~~~~f~Dv~sld~~~lL~~ip~Pv~alI~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~kQti~NACgt~AlLh 98 (214)
T PF01088_consen 19 LGVSGVQFEDVYSLDDPELLAMIPRPVYALIFLFPWTEEYEERRAEEDAKIEEKGQDIPENVFFAKQTIGNACGTIALLH 98 (214)
T ss_dssp TTBTSEEEEEESTSSHHHHHTTSSSSEEEEEEEEE--HHHHHHHHHHHHHHCCHSCTCGTTS-EES-SSBTGHHHHHHHH
T ss_pred cCCceeEEEEcccccchHhhhhcCccceeEEEEEecchhhhhhhccccccccccccCCCCCceEeeecCCchhhHHHHHH
Confidence 7999999999999999 459999 99999999999996432211 11 12345689999999999999999999
Q ss_pred hhhCCCC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCC
Q 021248 71 ILLNCPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDG 147 (315)
Q Consensus 71 ~l~N~~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G 147 (315)
+|+|+++ |.+||.|++|+++|.+|+|++||.+|++++.|+.+||+||++|++..+. ...+++++||||||||++|
T Consensus 99 ~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~l~~~~~l~~aH~s~A~~g~t~~~~--~~~~~~~~~HFI~fV~~~G 176 (214)
T PF01088_consen 99 ALLNNPDRIEIEPGSILDQFKEFTKDLSPEERGKALENSKELRKAHNSFARQGQTEAPD--DEADDEVDFHFIAFVPVDG 176 (214)
T ss_dssp HHHTCCCTTCBBTTSHHHHHHHHHTTSTHHHHHHHHHTHHHHHHHHHHHHCHCSSTS-H----TTSCGCEEEEEEEEETT
T ss_pred HHhcccccccccCCchHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcCCCc--cccCCCCCccEEEEEeECC
Confidence 9999987 8889999999999999999999999999999999999999999865321 1135667899999999999
Q ss_pred eEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhh
Q 021248 148 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERY 189 (315)
Q Consensus 148 ~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y 189 (315)
+||||||||+|||+||++++ ++|+++|+++|++||++|
T Consensus 177 ~LyELDG~k~~Pi~~G~~~~----~~~l~~a~~vik~~m~~y 214 (214)
T PF01088_consen 177 HLYELDGRKSGPIDHGPCSD----EDWLSDARPVIKERMERY 214 (214)
T ss_dssp EEEEEETTSSS-EEEEE-BT----TSHHHHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCCCeEcCcCCC----ccHHHHHHHHHHHHHhcC
Confidence 99999999999999999985 899999999999999998
No 3
>KOG1415 consensus Ubiquitin C-terminal hydrolase UCHL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-60 Score=420.82 Aligned_cols=191 Identities=36% Similarity=0.539 Sum_probs=172.0
Q ss_pred CCCcc-cEEEEeecCChhhhhcc-CCceEEEEEeecCCCCcccccc----ccCCCCCccchhhhhhhhhHHHHHHHhhhC
Q 021248 1 MQVKG-VQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRVV----IKDPNPNLFFASQVINNACATQAILSILLN 74 (315)
Q Consensus 1 lGv~~-~~f~DVysLD~~~L~~l-~Pv~alIfLFp~~~~~~~~~~~----~~~~~~~v~FakQtI~NACgT~AlLh~l~N 74 (315)
|||++ |+|.||||||++.|+++ |||+|||||||+++..+..+.. .++.+++||||||||+|||||+||||+|+|
T Consensus 22 lGv~~~~~~~DVy~ldee~L~~vPrPv~A~lllFP~~e~~e~~~~~~~e~~k~~~~~V~fmkQti~NACGTiaLlHslaN 101 (222)
T KOG1415|consen 22 LGVAGEWSVVDVYGLDEESLEFVPRPVKALLLLFPITEKREEFRKEQIEEIKEQSDKVFFMKQTIGNACGTIALLHSLAN 101 (222)
T ss_pred hCCCCceEEEEeeecChhhhhhcCccceEEEEEecccchhhHhhhhhHhhhhcCCCceEEEeccccchhHHHHHHHHHhc
Confidence 79998 99999999999999999 9999999999999754433211 123356899999999999999999999999
Q ss_pred CCC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEe
Q 021248 75 CPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYE 151 (315)
Q Consensus 75 ~~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyE 151 (315)
+.+ +..||.|++|++.+.+|+|++|+++|+++++|+.+|..+|..|++. .++++++||||||.+||+|||
T Consensus 102 ~~~r~~l~~Gs~l~~fl~~~~~~s~eeRa~~le~d~~l~~~H~a~a~eGqte-------~~~~vd~HFI~~v~~~G~lYE 174 (222)
T KOG1415|consen 102 NEDRVKLEDGSFLKKFLEEAEKMSPEERADLLENDEELEAAHEAAAQEGQTE-------ADEDVDLHFICFVNKNGHLYE 174 (222)
T ss_pred cccccccCCchHHHHHHHHhhcCCHHHHHHHhcccHHHHHHHHHHHhcCCCC-------CccccceEEEEEEccCCeEEE
Confidence 987 5669999999999999999999999999999999999999999863 235678999999999999999
Q ss_pred ecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeec
Q 021248 152 LDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 203 (315)
Q Consensus 152 LDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~ 203 (315)
||||++|||.||++++ +.++.+|.+||+++|++ .+++++||+|||++
T Consensus 175 LDgR~~fPi~hG~ts~----~tl~kda~~v~k~~~~~-~~nel~Fs~iAl~~ 221 (222)
T KOG1415|consen 175 LDGRKPFPINHGPTSD----DTLLKDAAKVCKEFIER-NPNELRFSAIALTK 221 (222)
T ss_pred ecCCcCCCccCCCCch----HHHHHHHHHHHHHHHHc-CCCccceEEEEecC
Confidence 9999999999999986 78999999999999999 57889999999986
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.53 E-value=67 Score=33.78 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=20.7
Q ss_pred CCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCC
Q 021248 133 DDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTG 167 (315)
Q Consensus 133 ~~~~~HFI~fV~~~G~lyELDGlk~~Pi~~G~~~~ 167 (315)
++.-|.| |||-..|.|. | ...|...++..+
T Consensus 86 ~~e~Yqf-cYv~~~g~V~---G-~S~pFqf~~~~p 115 (546)
T PF07888_consen 86 DDEFYQF-CYVDQKGEVR---G-ASTPFQFRAPKP 115 (546)
T ss_pred CCCeEEE-EEECCCccEE---E-ecCCcccCCCCc
Confidence 3456888 9999999875 3 455666665444
No 5
>PHA02744 hypothetical protein; Provisional
Probab=55.95 E-value=7 Score=31.25 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=10.0
Q ss_pred CcceEEEEEeeC
Q 021248 135 DVYHFISYIPVD 146 (315)
Q Consensus 135 ~~~HFI~fV~~~ 146 (315)
.-||||||||..
T Consensus 5 ~~~~y~CiVPkE 16 (88)
T PHA02744 5 GKYHYICIAPKE 16 (88)
T ss_pred CceeEEEEecHH
Confidence 359999999965
No 6
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=26.05 E-value=1.6e+02 Score=29.59 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHh---------hhHHHHhcccCCcHHH
Q 021248 251 VNAGIEGATEKILMEEEKFK---------KWRTENIRRKHNYIPF 286 (315)
Q Consensus 251 ~~~~i~~~~~~i~~E~~k~~---------~~~~En~rRrhny~pf 286 (315)
++.+-.+++.+|+-|.+..+ .-..|+.+.||.-+..
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~ 188 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISL 188 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666654443222 2246788999986654
No 7
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.94 E-value=4.9e+02 Score=24.22 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=31.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHh-cC
Q 021248 247 SLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAE-KK 298 (315)
Q Consensus 247 ~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~La~-~g 298 (315)
.|..+..+|..+...|..-+..+.+-.....|.-+.|.|+-.+.=+++.+ -|
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44456677777777775544444444444455556788877666555555 44
No 8
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=23.84 E-value=2.5e+02 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.478 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhh----HHHHhccc
Q 021248 255 IEGATEKILMEEEKFKKW----RTENIRRK 280 (315)
Q Consensus 255 i~~~~~~i~~E~~k~~~~----~~En~rRr 280 (315)
....+..+..|..+..+| +.||+.|+
T Consensus 226 ~~~y~r~~~~~~~~~~~~~~kr~~en~~r~ 255 (266)
T cd08065 226 FNYYQRNLARQQAQIQQWLQKRKAENAQRE 255 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334577788888887777 57886554
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.03 E-value=8.2e+02 Score=26.64 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=31.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhHHHH-hccc-----CCcHHHHHHHHHHHHhcC
Q 021248 246 KSLSEVNAGIEGATEKILMEEEKFKKWRTEN-IRRK-----HNYIPFLFNFLKILAEKK 298 (315)
Q Consensus 246 ~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En-~rRr-----hny~pfi~~llk~La~~g 298 (315)
.-..+++.|+.+|+..+..-++....+..|. ..|. +.=.-.++..|..|-+|.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN 603 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3344567777777777765555555566655 1222 334556666677666554
No 10
>CHL00044 rpl16 ribosomal protein L16
Probab=21.33 E-value=80 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.5
Q ss_pred CCcceEEEEEeeCCeEEeecCC
Q 021248 134 DDVYHFISYIPVDGVLYELDGL 155 (315)
Q Consensus 134 ~~~~HFI~fV~~~G~lyELDGl 155 (315)
....|+||.|+.+--|+|++|.
T Consensus 88 G~~~~~va~V~~G~ilfEi~g~ 109 (135)
T CHL00044 88 GSPEYWVAVVKPGRILYEMGGV 109 (135)
T ss_pred CCccEEEEEECCCcEEEEEeCC
Confidence 3468999999999999999984
No 11
>PHA00447 lysozyme
Probab=20.45 E-value=88 Score=26.76 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=15.5
Q ss_pred CCCcceEEEEEeeCCeEEeecC
Q 021248 133 DDDVYHFISYIPVDGVLYELDG 154 (315)
Q Consensus 133 ~~~~~HFI~fV~~~G~lyELDG 154 (315)
.+..|||+ |-.||.|||.-|
T Consensus 41 ~dIgYhf~--I~~dG~I~eGR~ 60 (142)
T PHA00447 41 LDVGYHFI--IRRDGTVEEGRP 60 (142)
T ss_pred CCcCeEEE--ECCCCEEEECCC
Confidence 35689994 688999999544
Done!