Query 021248
Match_columns 315
No_of_seqs 200 out of 671
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihr_A Ubiquitin carboxyl-term 100.0 2E-93 6.7E-98 681.6 23.6 294 1-313 25-321 (328)
2 3rii_A Ubiquitin carboxyl-term 100.0 2.3E-73 8E-78 522.1 18.7 201 1-206 30-233 (233)
3 1xd3_A Ubiquitin carboxyl-term 100.0 2.9E-71 1E-75 507.5 16.6 195 1-204 23-230 (230)
4 4dm9_A Ubiquitin carboxyl-term 100.0 1.3E-70 4.5E-75 502.4 17.3 193 1-205 25-228 (228)
5 2wdt_A Ubiquitin carboxyl-term 100.0 2.2E-69 7.6E-74 495.4 13.5 195 1-206 24-228 (232)
6 1cmx_A Protein (ubiquitin YUH1 100.0 5.2E-69 1.8E-73 493.1 11.5 198 1-204 25-234 (235)
7 1slq_A VP4; beta sandwich, gre 39.7 37 0.0013 30.7 5.0 36 193-228 218-266 (278)
8 3hnw_A Uncharacterized protein 30.3 1.9E+02 0.0065 23.6 7.7 34 143-190 12-45 (138)
9 3a2a_A Voltage-gated hydrogen 23.9 1.9E+02 0.0065 20.2 5.5 18 210-227 10-27 (58)
10 3lay_A Zinc resistance-associa 22.7 1.7E+02 0.0059 24.8 6.3 23 246-268 113-135 (175)
11 1yck_A Peptidoglycan recogniti 22.2 37 0.0013 28.6 1.9 16 134-151 71-86 (175)
No 1
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=100.00 E-value=2e-93 Score=681.56 Aligned_cols=294 Identities=50% Similarity=0.896 Sum_probs=236.6
Q ss_pred CCCcccEEEEeecCChhhhhccCCceEEEEEeecCCCCcccccccc-CCCCCccchhhhhhhhhHHHHHHHhhhCCC--C
Q 021248 1 MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIK-DPNPNLFFASQVINNACATQAILSILLNCP--D 77 (315)
Q Consensus 1 lGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~-~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~ 77 (315)
|||++|+|+||||||+++|++++|||||||||||++..+....... ...++|||+||||+||||||||||+|+|++ .
T Consensus 25 LGv~~~~f~DVysLD~e~L~~l~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~v~f~kQtI~NACGT~ALLh~l~N~~~~~ 104 (328)
T 3ihr_A 25 FGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQD 104 (328)
T ss_dssp HTCBSEEEEECCCCCHHHHHTTCSEEEEEEEEECCSCCCCSSEECCSTTTTTSCCCCCCSGGGHHHHHHHHHHHTCCCTT
T ss_pred cCCCceEEEEeccCCHHHHhcccCceEEEEEEecCchhhhcccccccCcccccchHHHhccchHHHHHHHHHHHcCCccc
Confidence 6999999999999999999999999999999999875443322222 223579999999999999999999999986 4
Q ss_pred CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCC
Q 021248 78 IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKE 157 (315)
Q Consensus 78 i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~ 157 (315)
|++||.|++|+++|.+|+|++||.+|+|++.|+.+||+||++|++..+ ++++.+++++||||||||+||+||||||||+
T Consensus 105 I~~Gs~L~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~d-t~~~~~d~~~~HFIafV~~dG~LyELDG~k~ 183 (328)
T 3ihr_A 105 VHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFHFVSYVPVNGRLYELDGLRE 183 (328)
T ss_dssp CBCHHHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC------------------CEEEEEEEEETTEEEEEETTSS
T ss_pred CCCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCC-CCCCCCcCcceeEEEEEeeCCEEEEcCCCCC
Confidence 999999999999999999999999999999999999999999976432 2334456678999999999999999999999
Q ss_pred CCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 021248 158 GPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVD 237 (315)
Q Consensus 158 ~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 237 (315)
|||+||+|++ ++||++|+++|++||++|++++++|||||||+|++..++++|+.+++++. ..
T Consensus 184 gPI~hG~~~~----e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d~~~~~~~~l~~l~~~~~------~~-------- 245 (328)
T 3ihr_A 184 GPIDLGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLA------EE-------- 245 (328)
T ss_dssp SCEEEEECBT----TBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHH------HS--------
T ss_pred CCcccCCCCc----hhHHHHHHHHHHHHHHhcCCCCceEEEEEecCChHHHHHHHHHHHHhhhh------cc--------
Confidence 9999999985 89999999999999999988899999999999999999999998854211 00
Q ss_pred ccchhHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhcc
Q 021248 238 KTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSS 313 (315)
Q Consensus 238 ~~~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~La~~g~L~~l~~~a~~~~~~ 313 (315)
....+.....+.+++.+|..+++.|++|++||++|+.||+||||||+|||+++||.||++|+|.+|+++||+|+++
T Consensus 246 ~~~~~~~~~~~~~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~pfi~~llk~la~~~~l~~~~e~ak~~~~~ 321 (328)
T 3ihr_A 246 PMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNA 321 (328)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSSTTTTTC----------
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 0011122345677899999999999999999999999999999999999999999999999999999999988764
No 2
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=100.00 E-value=2.3e-73 Score=522.07 Aligned_cols=201 Identities=55% Similarity=1.011 Sum_probs=173.8
Q ss_pred CCCcccEEEEeecCChhhhhccCCceEEEEEeecCCCCccccccccC-CCCCccchhhhhhhhhHHHHHHHhhhCCC--C
Q 021248 1 MQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKD-PNPNLFFASQVINNACATQAILSILLNCP--D 77 (315)
Q Consensus 1 lGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~-~~~~v~FakQtI~NACgT~AlLh~l~N~~--~ 77 (315)
|||++|+|+||||||+++|++++|||||||||||++..+.......+ ..++|||+||||+||||||||||+|+|++ .
T Consensus 30 LGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~ALLh~l~N~~~~~ 109 (233)
T 3rii_A 30 FGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQD 109 (233)
T ss_dssp TTCBSEEEEECSCSSTTTTTTTCSEEEEEEEECCCTTCCCSSEECCSGGGGTSCCCCCCCGGGHHHHHHHHHHHTCCCTT
T ss_pred hCCCCcEEEEcccCCHHHHhhccCceEEEEEEeccchhhhccCccccCCcccceEeehhccccHHHHHHHHHHHcCCccc
Confidence 79999999999999999999999999999999998754433222111 22479999999999999999999999987 5
Q ss_pred CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCC
Q 021248 78 IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKE 157 (315)
Q Consensus 78 i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~ 157 (315)
|++||.|++|+++|++|+|++||++|+|++.|+.+||+||++|++..+ ++++.+++++||||||||+||+||||||||+
T Consensus 110 i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aH~s~A~~g~~~~d-t~~~~~~~~~~HFIafV~~dG~LyELDG~k~ 188 (233)
T 3rii_A 110 VHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFHFVSYVPVNGRLYELDGLRE 188 (233)
T ss_dssp CBCCHHHHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHTSCC-----------CCGGGGSEEEEEEEETTEEEEECTTSS
T ss_pred ccCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhhcCCccCC-CCCCCccCcceeEEEEEEeCCeEEEcCCCCC
Confidence 999999999999999999999999999999999999999999987543 2234456678999999999999999999999
Q ss_pred CCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecCch
Q 021248 158 GPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRK 206 (315)
Q Consensus 158 ~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d~~ 206 (315)
|||+||++++ ++||++|+++|++||++|+++++||||||||+|++
T Consensus 189 gPi~~G~~~~----e~~l~~a~~vi~~ri~~~~~~ei~FslmAL~~d~~ 233 (233)
T 3rii_A 189 GPIDLGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 233 (233)
T ss_dssp SCEEEEECCS----SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEECC-
T ss_pred CCcccCCCCc----hhHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCC
Confidence 9999999986 89999999999999999988899999999999973
No 3
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=100.00 E-value=2.9e-71 Score=507.47 Aligned_cols=195 Identities=30% Similarity=0.442 Sum_probs=173.8
Q ss_pred CCCcc-cEEEEeecCChhhhhcc-CCceEEEEEeecCCCCccccc--------cccCCCCCccchhhhhhhhhHHHHHHH
Q 021248 1 MQVKG-VQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV--------VIKDPNPNLFFASQVINNACATQAILS 70 (315)
Q Consensus 1 lGv~~-~~f~DVysLD~~~L~~l-~Pv~alIfLFp~~~~~~~~~~--------~~~~~~~~v~FakQtI~NACgT~AlLh 70 (315)
|||++ |+|+||||||+++|+++ +|||||||||||++.++..+. ..++.+++|||+||||+||||||||||
T Consensus 23 lGv~~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~AlLh 102 (230)
T 1xd3_A 23 LGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIH 102 (230)
T ss_dssp TTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCTTCCCCCCCSBTCHHHHHHHH
T ss_pred cCCCceEEEEEeccCCHHHHhhCCCCceEEEEEEECChhhhhhhhhhhcccccccCCCCcCcEEeehhccccHHHHHHHH
Confidence 79998 99999999999999999 999999999999974332211 122344679999999999999999999
Q ss_pred hhhCCCC-CCC--CcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCC
Q 021248 71 ILLNCPD-IDI--GPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDG 147 (315)
Q Consensus 71 ~l~N~~~-i~l--gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G 147 (315)
+|+|+++ |.+ ||.|++|+++|.+|+|++||++|+|++.|+.+||+||++|++.. +..+++++||||||||++|
T Consensus 103 ~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~----p~~~~~~~~HFI~fV~~~G 178 (230)
T 1xd3_A 103 AIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEA----PSIDEKVDLHFIALVHVDG 178 (230)
T ss_dssp HHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCC----CCTTSCCCEEEEEEEEETT
T ss_pred HHHcCcCCcccCCCchHHHHHHHccCCCHHHHHHHhcCcHHHHHHHHHHhccCCCCC----CCCCCCcCeEEEEEEeeCC
Confidence 9999986 666 99999999999999999999999999999999999999998742 2234567899999999999
Q ss_pred eEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecC
Q 021248 148 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKN 204 (315)
Q Consensus 148 ~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d 204 (315)
+||||||||+|||+||+|++ ++||++|+++|++||++| ++++|||||||+++
T Consensus 179 ~LyELDG~k~gPi~~G~~~~----~~~l~~a~~vi~~~~~~~-~~~i~FslmAl~~~ 230 (230)
T 1xd3_A 179 HLYELDGRKPFPINHGETSD----ETLLEDAIEVCKKFMERD-PDELRFNAIALSAA 230 (230)
T ss_dssp EEEEECTTSSSCEEEEECCT----TTHHHHHHHHHHHHHHHS-TTCCCCEEEEEEEC
T ss_pred EEEEccCCCCCCeecCCCCc----HhHHHHHHHHHHHHHHhC-CCCceEEEEEEecC
Confidence 99999999999999999986 789999999999999997 57999999999975
No 4
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=100.00 E-value=1.3e-70 Score=502.37 Aligned_cols=193 Identities=28% Similarity=0.465 Sum_probs=173.9
Q ss_pred CCCcc-cEEEEeecCChhhhhcc-CCceEEEEEeecCCCCccccc------cccCCCCCccchhhhhhhhhHHHHHHHhh
Q 021248 1 MQVKG-VQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV------VIKDPNPNLFFASQVINNACATQAILSIL 72 (315)
Q Consensus 1 lGv~~-~~f~DVysLD~~~L~~l-~Pv~alIfLFp~~~~~~~~~~------~~~~~~~~v~FakQtI~NACgT~AlLh~l 72 (315)
|||++ |+|+||||||+++|+++ +|||||||||||++.++..+. ...+..++|||+||||+||||||||||+|
T Consensus 25 LGv~~~~~f~DVysLD~dlL~~lP~Pv~alIfLFP~~~~~e~~r~~~~~~~~~~~~~~~v~f~kQtI~NACgt~ALLh~l 104 (228)
T 4dm9_A 25 LGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAV 104 (228)
T ss_dssp TTBCSSEEEEEECCSSHHHHHTSCSCEEEEEEEEECCHHHHHHHHHHHHHHTTTTSCTTSCCCCCCSTTCHHHHHHHHHH
T ss_pred cCCCCceEEEEeecCCHHHHhhCCCCceEEEEEecccchhhhhhhhhhccccccCCCcccEEeeeeccccHHHHHHHHHH
Confidence 79997 99999999999999999 999999999999875432211 12234567999999999999999999999
Q ss_pred hCCCC-CC--CCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeE
Q 021248 73 LNCPD-ID--IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVL 149 (315)
Q Consensus 73 ~N~~~-i~--lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~l 149 (315)
+|+++ |. +||.|++|+++|++|+|++||++|+|++.|+.+||+||++|++. .+++++||||||||+||+|
T Consensus 105 ~N~~~~i~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~-------~~~~~~~HFIafV~~dG~L 177 (228)
T 4dm9_A 105 ANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR-------VDDKVNFHFILFNNVDGHL 177 (228)
T ss_dssp HTTTTTCCBCTTCHHHHHHHHTTTSCHHHHHHHHHTCHHHHHHHHHHHTTSSCC-------CCTTCCEEEEEEEEETTEE
T ss_pred hcCccccccCCCcHHHHHHHHhccCCHHHHHHHHhcCHHHHHHHHHHhccCCCC-------CCCCCCceEEEEEEeCCeE
Confidence 99876 55 99999999999999999999999999999999999999999863 3466789999999999999
Q ss_pred EeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccCCceeEEEEeecCc
Q 021248 150 YELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR 205 (315)
Q Consensus 150 yELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~~~~i~FslmAL~~d~ 205 (315)
|||||||+|||+||++++ ++|+++|+++|++||++ .+++++|||||||+|+
T Consensus 178 yELDG~k~gPi~~G~~~~----~~~l~~a~~vi~~~m~~-~~~ei~FslmAL~~~~ 228 (228)
T 4dm9_A 178 YELDGRMPFPVNHGASSE----DTLLKDAAKVCREFTER-EQGEVRFSAVALCKAA 228 (228)
T ss_dssp EEECTTSSSCEEEEECCG----GGHHHHHHHHHHHHHHH-SCSCCCCEEEEEEECC
T ss_pred EEcCCCCCCCceeccCCc----hhHHHHHHHHHHHHHHc-CCCCceEEEEEEecCC
Confidence 999999999999999986 79999999999999998 5789999999999985
No 5
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=100.00 E-value=2.2e-69 Score=495.44 Aligned_cols=195 Identities=26% Similarity=0.422 Sum_probs=166.1
Q ss_pred CCCcccEEEEeecCChhhhhcc-CCceEEEEEeecCCCCccccc---c--ccCCCCCccchhhhhhhhhHHHHHHHhhhC
Q 021248 1 MQVKGVQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV---V--IKDPNPNLFFASQVINNACATQAILSILLN 74 (315)
Q Consensus 1 lGv~~~~f~DVysLD~~~L~~l-~Pv~alIfLFp~~~~~~~~~~---~--~~~~~~~v~FakQtI~NACgT~AlLh~l~N 74 (315)
|||++|+|+||||||+++|+++ +|||||||||||++.++.... . ..+.+++|||+||||+||||||||||+|+|
T Consensus 24 lGv~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N 103 (232)
T 2wdt_A 24 LGQSKLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVWFIKQYIPNSCGTIALLHLYGN 103 (232)
T ss_dssp HTCCSEEEEECCCSSHHHHTTSCSCCCEEEEEEECC------------------CTTSCCCCCCSTTCHHHHHHHHHHHH
T ss_pred hCCCCeEEEEcccCCHHHHhhCCCCceEEEEEEECCcccchhhccccccccccCCCCcEEeeeccccchHHHHHHHHHhc
Confidence 6999999999999999999999 999999999999975433211 0 112346799999999999999999999999
Q ss_pred CCC-C--CCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEe
Q 021248 75 CPD-I--DIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYE 151 (315)
Q Consensus 75 ~~~-i--~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyE 151 (315)
+++ + .+||.|++|+++|.+|+|++||++|+|++.|+.+||+| .|++.. +..+++++||||||||++|+|||
T Consensus 104 ~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~--~g~t~~----p~~~~~v~~HFI~fV~~~G~LyE 177 (232)
T 2wdt_A 104 LRNKFELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEF--CGQVEN----RDDILDVDTHFIVFVQIEGKIIE 177 (232)
T ss_dssp STTTSCCCTTSHHHHHHHHTTTSCHHHHHHHHHHCHHHHHHHTTS--SCCCCS----HHHHHCCCEEEEEEEESSSEEEE
T ss_pred CccccccCCChHHHHHHHHccCCCHHHHHHHhhccHHHHHHHHhc--cCccCC----CCCCCCCCeEEEEEEEeCCEEEE
Confidence 875 5 77999999999999999999999999999999999999 566532 11234567999999999999999
Q ss_pred ecCCCCCCcccCCCCCCCCcccHHHHHHHHH-HHHHHhhccCCceeEEEEeecCch
Q 021248 152 LDGLKEGPISLGPCTGGQGDMDWLQMVQPVI-QERIERYSKSEIRFNLMAVIKNRK 206 (315)
Q Consensus 152 LDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi-~~ri~~y~~~~i~FslmAL~~d~~ 206 (315)
|||||+|||+||+|++ ++|+++|+++| ++||++| ++++|||||||+++..
T Consensus 178 LDG~k~gPi~~G~~~~----~~~l~~a~~vi~~~~m~~~-~~~i~FslmAl~~~~~ 228 (232)
T 2wdt_A 178 LDGRKDHPTVHCFTNG----DNFLYDTGKIIQDKFIEKC-KDDLRFSALAVIPNDN 228 (232)
T ss_dssp ECTTSSSCEEEEECCG----GGHHHHHHHHHHHHTTTTC-SSCCCCEEEEEEEC--
T ss_pred ccCCCCCCcccCCCCc----HhHHHHHHHHHHHHHHHhC-CCCceEEEEEEeeCCc
Confidence 9999999999999986 79999999999 9999998 7899999999999963
No 6
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=100.00 E-value=5.2e-69 Score=493.13 Aligned_cols=198 Identities=20% Similarity=0.341 Sum_probs=167.9
Q ss_pred CCC-cccEEEEeecCCh-hhhhcc-CCceEEEEEeecCCCCccccccccCCCCCccchhhhhhhhhHHHHHHHhhhCCC-
Q 021248 1 MQV-KGVQVEELYSLDL-DSLNNL-RPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCP- 76 (315)
Q Consensus 1 lGv-~~~~f~DVysLD~-~~L~~l-~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~- 76 (315)
||| ++|+|+||||||+ ++|+++ +|||||||||||++..+..+......+++|||+||||+||||||||||+|+|+.
T Consensus 25 lGv~~~~~f~DVysLdd~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~ 104 (235)
T 1cmx_A 25 LGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQS 104 (235)
T ss_dssp HTBCTTEEEEEECCSSCTTGGGSSCSSCCEEEEEEECC---------------CCCEECCCSBTCHHHHHHHHHHHTCGG
T ss_pred cCCCCCcEEEEcccCCCHHHHhcCCCCcEEEEEEEeCCcccccccccccccccCcEeehhhhcccHHHHHHHHHHhccCc
Confidence 699 6999999999955 899999 999999999999986554433222234579999999999999999999999983
Q ss_pred CCCCCcchHHHHHHhcCCChhhHHh--hhcCCHHHHHHHH--hcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEee
Q 021248 77 DIDIGPELSKLKEFTKNFPPELKGL--AINNSDAIRAAHN--SFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYEL 152 (315)
Q Consensus 77 ~i~lgs~L~~f~~~t~~~~p~~Rg~--~L~ns~~i~~~Hn--s~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyEL 152 (315)
.|++||.|++|+++|.+|+|++||. +|+|++.|+.+|| +||++|++.. +..+++++||||||||++|+||||
T Consensus 105 ~i~~gs~L~~f~~~t~~~~p~~Rg~~~~L~n~~~i~~aHn~~s~A~~g~t~~----p~~~~~~~~HFI~fV~~~G~LyEL 180 (235)
T 1cmx_A 105 LLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEA----PEATADTNLHYITYVEENGGIFEL 180 (235)
T ss_dssp GBCTTSHHHHHHHHHHHHTSCSSEECSHHHHHHHHHHHHTCHHHHHCSSSCC----CCTTSCCSEEEEEEEECSSEEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCHHHhcchhhccccHHHHHHhChhhhhcccCCCC----CCCCCCCCeEEEEEEeeCCEEEEe
Confidence 5899999999999999999999999 9999999999999 9999998742 223456789999999999999999
Q ss_pred cCCC-CCCcccCCCCCCCCcccHHH-HHHHH-HHHHHHhhcc-CCceeEEEEeecC
Q 021248 153 DGLK-EGPISLGPCTGGQGDMDWLQ-MVQPV-IQERIERYSK-SEIRFNLMAVIKN 204 (315)
Q Consensus 153 DGlk-~~Pi~~G~~~~~~~~~~~l~-~a~~v-i~~ri~~y~~-~~i~FslmAL~~d 204 (315)
|||| +|||+||++++ ++++||+ +|+++ |++||++|.+ ++++||||||+++
T Consensus 181 DG~k~~gPi~~G~~~~--~~~~~l~~~a~~v~i~~~m~~~~~~~~i~FslmAL~~~ 234 (235)
T 1cmx_A 181 DGRNLSGPLYLGKSDP--TATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPN 234 (235)
T ss_dssp CTTCTTCCEEEEECCT--TCSSGGGCHHHHHHHHHHHHHHHHHTCCCCEEEEEEEC
T ss_pred cCCCCCCCeEccCCCC--CcchhhHHHHHHHHHHHHHHhccccCCceEEEEEEecC
Confidence 9999 99999999982 1278999 99999 9999999965 6999999999987
No 7
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=39.68 E-value=37 Score=30.66 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=28.1
Q ss_pred CceeEEEEeecCc-------------hHHHHHHHHHHHHHHHHHHHHHh
Q 021248 193 EIRFNLMAVIKNR-------------KELYTAELKEFQRKRERILQQLA 228 (315)
Q Consensus 193 ~i~FslmAL~~d~-------------~~~~~~~l~~l~~~~~~l~~~~~ 228 (315)
.-|||++.|+|.. ++.++++|..|+..-+.|.+.++
T Consensus 218 ~GrfslISLvPsNd~YQTPI~nSvTVRqDLerql~~LR~eFN~Lsq~iA 266 (278)
T 1slq_A 218 AGRFSLISLVPSNDDYQTPITNSVTVRQDLERQLGELREEFNALSQEIA 266 (278)
T ss_dssp EEEEEEEEEEESCCCCCCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEEEEecCCCcccCccccchhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999963 58899999988877777765553
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.25 E-value=1.9e+02 Score=23.55 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=23.9
Q ss_pred EeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhhc
Q 021248 143 IPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYS 190 (315)
Q Consensus 143 V~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~y~ 190 (315)
|.+.|+-|-|=| + .+ ++.|..++..+-++|....
T Consensus 12 V~I~Gk~Y~i~g---------~-e~----ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 12 VILGGKVIKLGG---------Y-ES----EEYLQRVASYINNKITEFN 45 (138)
T ss_dssp EEETTEEEEECS---------C-SC----HHHHHHHHHHHHHHHHHHT
T ss_pred EEECCEEEEecC---------C-Cc----HHHHHHHHHHHHHHHHHHH
Confidence 556788887644 2 11 5788888999999997753
No 9
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.94 E-value=1.9e+02 Score=20.22 Aligned_cols=18 Identities=6% Similarity=0.233 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021248 210 TAELKEFQRKRERILQQL 227 (315)
Q Consensus 210 ~~~l~~l~~~~~~l~~~~ 227 (315)
++++.+|+.+...|..+.
T Consensus 10 e~q~~kLKq~n~~L~~kv 27 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKI 27 (58)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555444444333
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.74 E-value=1.7e+02 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.214 Sum_probs=13.5
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHH
Q 021248 246 KSLSEVNAGIEGATEKILMEEEK 268 (315)
Q Consensus 246 ~~~~~~~~~i~~~~~~i~~E~~k 268 (315)
..+.++..+|..++.++..+..+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677776666655543
No 11
>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern recognition proteins, immune syste; 1.70A {Homo sapiens} SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A* 3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A* 3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A* 3qv4_A* 3rt4_A* ...
Probab=22.16 E-value=37 Score=28.62 Aligned_cols=16 Identities=50% Similarity=0.860 Sum_probs=14.1
Q ss_pred CCcceEEEEEeeCCeEEe
Q 021248 134 DDVYHFISYIPVDGVLYE 151 (315)
Q Consensus 134 ~~~~HFI~fV~~~G~lyE 151 (315)
+..||| +|..||.|||
T Consensus 71 digyhf--lI~~dG~I~e 86 (175)
T 1yck_A 71 DVGYNF--LIGEDGLVYE 86 (175)
T ss_dssp SCSCSE--EECTTSCEEE
T ss_pred ccCceE--EECCCCEEEE
Confidence 467999 6889999999
Done!