Query 021250
Match_columns 315
No_of_seqs 293 out of 1531
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 2.2E-18 7.6E-23 133.2 8.7 65 55-119 5-69 (80)
2 2h1k_A IPF-1, pancreatic and d 99.8 1.3E-18 4.6E-23 128.5 7.0 60 56-115 2-61 (63)
3 2vi6_A Homeobox protein nanog; 99.8 7.8E-19 2.7E-23 129.3 5.6 61 56-116 2-62 (62)
4 2da3_A Alpha-fetoprotein enhan 99.7 1.4E-18 4.8E-23 133.6 6.9 62 55-116 15-76 (80)
5 2dmu_A Homeobox protein goosec 99.7 2.4E-18 8.1E-23 129.6 8.0 62 55-116 5-66 (70)
6 2e1o_A Homeobox protein PRH; D 99.7 2.6E-18 8.8E-23 129.5 7.8 62 55-116 5-66 (70)
7 2dmt_A Homeobox protein BARH-l 99.7 3E-18 1E-22 132.4 8.4 62 55-116 15-76 (80)
8 2dmq_A LIM/homeobox protein LH 99.7 2.4E-18 8.1E-23 132.6 7.8 65 55-119 5-69 (80)
9 2cra_A Homeobox protein HOX-B1 99.7 1.7E-18 5.8E-23 130.5 6.8 62 55-116 5-66 (70)
10 1nk2_P Homeobox protein VND; h 99.7 2.9E-18 1E-22 131.6 8.1 64 57-120 9-72 (77)
11 2da2_A Alpha-fetoprotein enhan 99.7 2E-18 7E-23 129.8 6.4 62 55-116 5-66 (70)
12 1puf_A HOX-1.7, homeobox prote 99.7 8.1E-18 2.8E-22 129.1 9.5 64 55-118 11-74 (77)
13 3a01_A Homeodomain-containing 99.7 4.6E-18 1.6E-22 135.3 8.2 70 56-125 16-85 (93)
14 2dms_A Homeobox protein OTX2; 99.7 4E-18 1.4E-22 131.6 7.5 63 55-117 5-67 (80)
15 2kt0_A Nanog, homeobox protein 99.7 4E-18 1.4E-22 132.5 7.5 62 55-116 20-81 (84)
16 1ig7_A Homeotic protein MSX-1; 99.7 5.4E-18 1.9E-22 122.9 7.3 57 58-114 1-57 (58)
17 2hdd_A Protein (engrailed home 99.7 4.2E-18 1.4E-22 125.0 6.7 58 57-114 3-60 (61)
18 2djn_A Homeobox protein DLX-5; 99.7 3.1E-18 1.1E-22 129.0 6.1 63 54-116 4-66 (70)
19 2da1_A Alpha-fetoprotein enhan 99.7 4.4E-18 1.5E-22 128.0 6.9 62 55-116 5-66 (70)
20 2ecc_A Homeobox and leucine zi 99.7 3.7E-18 1.3E-22 132.0 6.4 59 59-117 5-63 (76)
21 1zq3_P PRD-4, homeotic bicoid 99.7 6.7E-18 2.3E-22 126.7 7.3 61 57-117 2-62 (68)
22 1wh5_A ZF-HD homeobox family p 99.7 5.5E-18 1.9E-22 131.7 6.6 60 55-114 15-78 (80)
23 1yz8_P Pituitary homeobox 2; D 99.7 3E-18 1E-22 128.5 4.8 62 56-117 2-63 (68)
24 2da5_A Zinc fingers and homeob 99.7 7.5E-18 2.6E-22 128.9 7.0 59 58-116 8-66 (75)
25 1jgg_A Segmentation protein EV 99.7 9.2E-18 3.1E-22 122.8 6.8 58 58-115 2-59 (60)
26 1ahd_P Antennapedia protein mu 99.7 8.1E-18 2.8E-22 126.3 6.7 61 57-117 2-62 (68)
27 1fjl_A Paired protein; DNA-bin 99.7 1.3E-17 4.5E-22 129.0 8.1 62 56-117 17-78 (81)
28 1uhs_A HOP, homeodomain only p 99.7 1.2E-17 4E-22 126.5 7.6 59 58-116 2-61 (72)
29 1bw5_A ISL-1HD, insulin gene e 99.7 5.1E-18 1.7E-22 126.4 5.2 60 57-116 3-62 (66)
30 1b8i_A Ultrabithorax, protein 99.7 7.2E-18 2.5E-22 130.8 6.2 62 55-116 18-79 (81)
31 2l7z_A Homeobox protein HOX-A1 99.7 1.5E-17 5.3E-22 126.4 7.8 61 56-116 6-66 (73)
32 2k40_A Homeobox expressed in E 99.7 5.7E-18 2E-22 126.4 5.1 61 58-118 2-62 (67)
33 3rkq_A Homeobox protein NKX-2. 99.7 1.3E-17 4.6E-22 120.2 6.8 57 57-113 2-58 (58)
34 3a02_A Homeobox protein arista 99.7 1E-17 3.5E-22 122.5 6.1 57 60-116 2-58 (60)
35 2da4_A Hypothetical protein DK 99.7 6.3E-18 2.2E-22 130.5 5.2 61 56-116 7-71 (80)
36 1ftt_A TTF-1 HD, thyroid trans 99.7 1.4E-17 4.9E-22 124.9 7.0 60 58-117 3-62 (68)
37 2hi3_A Homeodomain-only protei 99.7 1.9E-17 6.4E-22 125.8 7.7 59 58-116 3-62 (73)
38 2r5y_A Homeotic protein sex co 99.7 1E-17 3.5E-22 131.6 6.4 61 55-115 26-86 (88)
39 3nar_A ZHX1, zinc fingers and 99.7 9.3E-18 3.2E-22 134.1 6.1 63 56-118 24-86 (96)
40 3a03_A T-cell leukemia homeobo 99.7 1.7E-17 5.7E-22 120.0 6.7 54 62-115 2-55 (56)
41 2m0c_A Homeobox protein arista 99.7 2E-17 6.7E-22 125.5 7.3 62 55-116 7-68 (75)
42 1wh7_A ZF-HD homeobox family p 99.7 1.2E-17 4E-22 130.0 5.7 59 55-114 15-78 (80)
43 1b72_A Protein (homeobox prote 99.7 2E-17 7E-22 132.2 6.7 63 55-117 32-94 (97)
44 1akh_A Protein (mating-type pr 99.7 1.9E-17 6.4E-22 121.2 5.8 57 57-113 5-61 (61)
45 1x2n_A Homeobox protein pknox1 99.7 3.1E-17 1.1E-21 124.3 7.2 63 55-117 5-70 (73)
46 2dn0_A Zinc fingers and homeob 99.7 3.2E-17 1.1E-21 125.5 6.7 60 58-117 9-68 (76)
47 2ecb_A Zinc fingers and homeob 99.7 3.2E-17 1.1E-21 130.2 6.6 58 60-117 14-71 (89)
48 2ly9_A Zinc fingers and homeob 99.7 3.6E-17 1.2E-21 124.2 6.6 61 57-117 6-66 (74)
49 1k61_A Mating-type protein alp 99.7 5.9E-17 2E-21 118.3 6.8 56 60-115 1-59 (60)
50 1puf_B PRE-B-cell leukemia tra 99.7 5.3E-17 1.8E-21 123.1 6.6 61 58-118 2-65 (73)
51 2cqx_A LAG1 longevity assuranc 99.7 1.9E-17 6.6E-22 126.2 3.7 58 58-115 9-67 (72)
52 2cuf_A FLJ21616 protein; homeo 99.7 1.1E-16 3.6E-21 127.6 7.9 63 55-117 5-82 (95)
53 2dmn_A Homeobox protein TGIF2L 99.7 1.2E-16 4E-21 124.7 7.7 64 55-118 5-71 (83)
54 1b72_B Protein (PBX1); homeodo 99.7 1.2E-16 4.1E-21 124.8 7.4 61 58-118 2-65 (87)
55 2dmp_A Zinc fingers and homeob 99.7 1.9E-16 6.4E-21 125.2 8.0 58 59-116 15-72 (89)
56 1le8_B Mating-type protein alp 99.7 8.5E-17 2.9E-21 125.3 5.8 61 58-118 3-66 (83)
57 1du6_A PBX1, homeobox protein 99.7 6.3E-17 2.2E-21 119.6 4.8 58 57-114 3-63 (64)
58 2l9r_A Homeobox protein NKX-3. 99.6 3.4E-17 1.2E-21 124.2 3.1 57 63-119 10-66 (69)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 2.5E-16 8.6E-21 123.4 7.0 59 56-114 26-87 (87)
60 3nau_A Zinc fingers and homeob 99.6 3.3E-16 1.1E-20 117.9 6.7 53 64-116 11-63 (66)
61 1x2m_A LAG1 longevity assuranc 99.6 2.5E-16 8.6E-21 118.0 4.9 50 66-115 9-59 (64)
62 1au7_A Protein PIT-1, GHF-1; c 99.6 3.2E-16 1.1E-20 134.3 5.7 60 56-115 86-145 (146)
63 1e3o_C Octamer-binding transcr 99.6 3.9E-16 1.3E-20 135.4 6.1 60 56-115 100-159 (160)
64 2e19_A Transcription factor 8; 99.6 5.4E-16 1.8E-20 115.7 5.9 53 62-114 8-60 (64)
65 3d1n_I POU domain, class 6, tr 99.6 1E-15 3.4E-20 131.4 7.5 59 56-114 92-150 (151)
66 2xsd_C POU domain, class 3, tr 99.6 4.7E-16 1.6E-20 135.7 5.3 63 55-117 97-159 (164)
67 2da6_A Hepatocyte nuclear fact 99.6 2E-15 7E-20 122.6 8.5 63 55-117 4-87 (102)
68 1wi3_A DNA-binding protein SAT 99.6 2.9E-15 9.8E-20 113.5 6.8 58 56-113 6-64 (71)
69 3l1p_A POU domain, class 5, tr 99.6 1.8E-15 6E-20 130.7 6.1 61 55-115 94-154 (155)
70 3k2a_A Homeobox protein MEIS2; 99.6 2.8E-15 9.5E-20 112.5 5.3 58 63-120 4-64 (67)
71 1lfb_A Liver transcription fac 99.5 1.8E-15 6.2E-20 122.2 4.2 61 57-117 9-90 (99)
72 2d5v_A Hepatocyte nuclear fact 99.5 2.8E-15 9.7E-20 129.9 5.6 62 56-117 96-157 (164)
73 1ic8_A Hepatocyte nuclear fact 99.4 2.1E-13 7.1E-18 122.2 3.6 58 57-114 115-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.4 9E-13 3.1E-17 104.6 6.8 57 63-119 11-70 (89)
75 2da7_A Zinc finger homeobox pr 99.3 1E-12 3.4E-17 99.9 5.5 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 3.4E-12 1.2E-16 121.5 4.4 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 9.3E-12 3.2E-16 113.4 5.6 54 59-112 144-218 (221)
78 2nzz_A Penetratin conjugated G 98.8 3.2E-10 1.1E-14 76.1 -0.6 27 99-125 1-27 (37)
79 2ys9_A Homeobox and leucine zi 93.4 0.071 2.4E-06 40.2 3.8 40 68-107 17-56 (70)
80 2jn6_A Protein CGL2762, transp 89.8 0.57 1.9E-05 35.6 5.6 42 62-106 4-45 (97)
81 2glo_A Brinker CG9653-PA; prot 84.1 1.6 5.4E-05 30.4 4.8 45 61-106 3-47 (59)
82 1hlv_A CENP-B, major centromer 79.3 4.1 0.00014 32.1 6.2 49 60-111 4-52 (131)
83 2elh_A CG11849-PA, LD40883P; s 75.7 5.7 0.0002 29.7 5.8 43 59-106 18-60 (87)
84 1tc3_C Protein (TC3 transposas 75.5 4 0.00014 25.7 4.3 41 62-107 4-44 (51)
85 1jko_C HIN recombinase, DNA-in 72.0 1.7 5.9E-05 28.1 1.8 41 63-108 5-45 (52)
86 3hug_A RNA polymerase sigma fa 67.2 8.8 0.0003 28.6 5.1 46 64-114 38-83 (92)
87 2wt7_B Transcription factor MA 65.4 14 0.00048 28.9 5.9 63 95-163 17-86 (90)
88 1gu4_A CAAT/enhancer binding p 60.4 13 0.00044 28.2 4.8 46 109-163 29-74 (78)
89 1t2k_D Cyclic-AMP-dependent tr 59.8 13 0.00046 26.3 4.6 36 121-162 24-59 (61)
90 2lv7_A Calcium-binding protein 59.3 38 0.0013 25.6 7.5 46 61-106 27-79 (100)
91 1jnm_A Proto-oncogene C-JUN; B 59.1 12 0.00041 26.7 4.2 36 121-162 24-59 (62)
92 2o8x_A Probable RNA polymerase 58.2 9.1 0.00031 26.4 3.5 45 64-113 16-60 (70)
93 1gd2_E Transcription factor PA 57.7 15 0.00052 27.3 4.7 22 129-150 39-60 (70)
94 1hjb_A Ccaat/enhancer binding 56.7 15 0.0005 28.5 4.6 46 109-163 29-74 (87)
95 1p4w_A RCSB; solution structur 55.8 21 0.00071 27.6 5.5 44 61-110 32-75 (99)
96 2wt7_A Proto-oncogene protein 54.4 18 0.00063 25.9 4.6 36 121-162 25-60 (63)
97 1ci6_A Transcription factor AT 53.3 20 0.00067 25.8 4.6 36 121-162 25-60 (63)
98 2rn7_A IS629 ORFA; helix, all 52.7 22 0.00075 27.0 5.1 46 61-106 4-52 (108)
99 3c57_A Two component transcrip 52.7 17 0.00057 27.5 4.4 44 63-112 27-70 (95)
100 3mzy_A RNA polymerase sigma-H 52.2 23 0.00077 27.8 5.3 44 64-113 110-153 (164)
101 1xsv_A Hypothetical UPF0122 pr 50.4 55 0.0019 25.5 7.3 46 64-114 26-71 (113)
102 1s7o_A Hypothetical UPF0122 pr 49.8 55 0.0019 25.7 7.2 47 63-114 22-68 (113)
103 1fse_A GERE; helix-turn-helix 47.2 23 0.00078 24.5 4.1 44 62-111 10-53 (74)
104 3a5t_A Transcription factor MA 46.9 10 0.00035 30.5 2.4 63 95-163 27-96 (107)
105 2yy0_A C-MYC-binding protein; 46.4 13 0.00045 26.1 2.6 32 126-163 19-50 (53)
106 3lph_A Protein REV; helix-loop 45.0 20 0.0007 26.9 3.6 36 69-118 18-53 (72)
107 1je8_A Nitrate/nitrite respons 44.8 14 0.00048 27.1 2.7 45 63-113 21-65 (82)
108 1ku3_A Sigma factor SIGA; heli 44.2 32 0.0011 24.2 4.6 46 64-110 11-56 (73)
109 1iuf_A Centromere ABP1 protein 44.0 32 0.0011 27.9 5.1 47 58-107 6-59 (144)
110 2adl_A CCDA; ribbon-helix-heli 43.9 8.9 0.00031 28.5 1.5 14 284-297 59-72 (72)
111 2p7v_B Sigma-70, RNA polymeras 42.4 26 0.00089 24.4 3.8 45 64-109 6-50 (68)
112 1x3u_A Transcriptional regulat 41.8 15 0.00053 25.9 2.5 44 64-113 17-60 (79)
113 3i5g_B Myosin regulatory light 39.2 52 0.0018 26.3 5.6 41 60-100 6-51 (153)
114 1u78_A TC3 transposase, transp 39.1 41 0.0014 26.0 4.9 41 62-107 5-45 (141)
115 1tty_A Sigma-A, RNA polymerase 38.5 33 0.0011 25.2 4.0 47 64-111 19-65 (87)
116 2rnj_A Response regulator prot 38.2 39 0.0013 24.9 4.4 45 63-113 29-73 (91)
117 1gd2_E Transcription factor PA 37.7 38 0.0013 25.1 4.1 38 113-150 30-67 (70)
118 1rp3_A RNA polymerase sigma fa 37.1 28 0.00097 29.1 3.9 45 64-113 188-232 (239)
119 2x7l_M HIV REV; nuclear export 36.7 27 0.00092 28.4 3.3 35 69-117 15-49 (115)
120 1or7_A Sigma-24, RNA polymeras 36.3 43 0.0015 27.2 4.8 45 64-113 141-185 (194)
121 2x48_A CAG38821; archeal virus 35.9 32 0.0011 22.6 3.3 38 64-106 14-53 (55)
122 2k27_A Paired box protein PAX- 33.5 1.1E+02 0.0038 24.5 6.8 41 62-107 24-64 (159)
123 2xi8_A Putative transcription 33.4 18 0.00061 24.1 1.6 23 87-109 17-39 (66)
124 2r1j_L Repressor protein C2; p 32.5 19 0.00066 24.1 1.7 24 87-110 21-44 (68)
125 3bd1_A CRO protein; transcript 32.0 21 0.00073 25.4 1.9 23 87-109 14-36 (79)
126 2yy0_A C-MYC-binding protein; 31.9 41 0.0014 23.5 3.3 32 119-150 19-50 (53)
127 1u78_A TC3 transposase, transp 31.9 68 0.0023 24.7 5.1 44 62-109 59-104 (141)
128 3fmy_A HTH-type transcriptiona 31.5 48 0.0017 23.3 3.8 41 63-110 10-50 (73)
129 3lay_A Zinc resistance-associa 30.8 91 0.0031 26.8 6.0 36 126-167 99-134 (175)
130 2jpc_A SSRB; DNA binding prote 30.1 32 0.0011 23.0 2.5 25 88-112 17-41 (61)
131 3bs3_A Putative DNA-binding pr 30.0 23 0.00077 24.5 1.7 23 87-109 26-48 (76)
132 1zug_A Phage 434 CRO protein; 29.6 22 0.00075 24.1 1.6 24 87-110 19-42 (71)
133 3ulq_B Transcriptional regulat 29.6 64 0.0022 24.1 4.3 40 62-107 28-67 (90)
134 1pdn_C Protein (PRD paired); p 28.6 1.1E+02 0.0037 22.8 5.6 41 62-107 16-56 (128)
135 3o9x_A Uncharacterized HTH-typ 28.5 53 0.0018 25.7 3.9 24 87-110 87-110 (133)
136 1adr_A P22 C2 repressor; trans 28.1 25 0.00086 24.2 1.7 24 87-110 21-44 (76)
137 2dgc_A Protein (GCN4); basic d 27.1 74 0.0025 22.8 4.1 24 134-163 38-61 (63)
138 2b5a_A C.BCLI; helix-turn-heli 26.9 27 0.00093 24.1 1.7 23 87-109 26-48 (77)
139 3bdn_A Lambda repressor; repre 26.5 31 0.0011 29.5 2.3 24 86-109 32-55 (236)
140 2q0o_A Probable transcriptiona 26.3 64 0.0022 27.8 4.3 44 62-111 174-217 (236)
141 2jee_A YIIU; FTSZ, septum, coi 26.0 82 0.0028 24.1 4.3 34 117-150 32-65 (81)
142 1r69_A Repressor protein CI; g 25.9 28 0.00097 23.4 1.6 24 87-110 17-40 (69)
143 3omt_A Uncharacterized protein 25.6 28 0.00096 24.1 1.6 23 87-109 24-46 (73)
144 2cqq_A RSGI RUH-037, DNAJ homo 25.3 1.8E+02 0.0062 21.2 6.0 43 61-103 8-50 (72)
145 1fi6_A EH domain protein REPS1 25.0 71 0.0024 23.3 3.8 42 64-105 3-49 (92)
146 1y7y_A C.AHDI; helix-turn-heli 24.9 31 0.0011 23.5 1.7 23 87-109 29-51 (74)
147 1t2k_D Cyclic-AMP-dependent tr 24.6 1.6E+02 0.0056 20.5 5.5 40 110-149 20-59 (61)
148 3b7h_A Prophage LP1 protein 11 23.9 42 0.0014 23.1 2.2 23 87-109 23-45 (78)
149 2kpj_A SOS-response transcript 23.9 32 0.0011 25.3 1.6 23 87-109 25-47 (94)
150 2wiu_B HTH-type transcriptiona 23.7 42 0.0014 23.8 2.2 23 87-109 28-50 (88)
151 2a6c_A Helix-turn-helix motif; 23.7 53 0.0018 23.5 2.8 23 87-109 34-56 (83)
152 2pmy_A RAS and EF-hand domain- 23.3 51 0.0018 23.7 2.7 44 63-106 20-68 (91)
153 2wt7_A Proto-oncogene protein 22.6 1.9E+02 0.0064 20.4 5.5 37 113-149 24-60 (63)
154 1k78_A Paired box protein PAX5 22.5 1.9E+02 0.0066 22.6 6.3 41 62-107 31-71 (149)
155 3gpv_A Transcriptional regulat 22.4 2.2E+02 0.0075 23.1 6.7 35 61-108 52-86 (148)
156 3qq6_A HTH-type transcriptiona 22.2 48 0.0016 23.6 2.3 21 87-107 26-46 (78)
157 3kz3_A Repressor protein CI; f 22.0 35 0.0012 24.1 1.5 24 87-110 28-51 (80)
158 2hin_A GP39, repressor protein 21.1 51 0.0017 24.1 2.2 21 87-107 13-33 (71)
159 2ef8_A C.ECOT38IS, putative tr 21.0 41 0.0014 23.5 1.7 23 87-109 26-48 (84)
160 1r8e_A Multidrug-efflux transp 20.9 1.2E+02 0.0043 26.4 5.2 34 62-108 43-76 (278)
161 1c07_A Protein (epidermal grow 20.4 76 0.0026 23.3 3.2 42 64-105 4-50 (95)
162 1l3l_A Transcriptional activat 20.4 1.1E+02 0.0037 26.2 4.6 44 62-111 172-215 (234)
163 1hjb_A Ccaat/enhancer binding 20.2 1.4E+02 0.0046 23.0 4.6 23 128-150 38-60 (87)
164 3s4r_A Vimentin; alpha-helix, 20.1 1.9E+02 0.0066 22.1 5.5 39 118-162 55-93 (93)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.2e-18 Score=133.15 Aligned_cols=65 Identities=29% Similarity=0.572 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~ 119 (315)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45666777899999999999999999999999999999999999999999999999999976543
No 2
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=1.3e-18 Score=128.53 Aligned_cols=60 Identities=33% Similarity=0.618 Sum_probs=54.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 356677789999999999999999999999999999999999999999999999999985
No 3
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.75 E-value=7.8e-19 Score=129.28 Aligned_cols=61 Identities=30% Similarity=0.413 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
..+++|+.||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3456677799999999999999999999999999999999999999999999999999853
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=133.59 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34555666799999999999999999999999999999999999999999999999999864
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=129.57 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 45666777899999999999999999999999999999999999999999999999999854
No 6
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.6e-18 Score=129.51 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 44566677899999999999999999999999999999999999999999999999999864
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=132.39 Aligned_cols=62 Identities=34% Similarity=0.584 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34455566699999999999999999999999999999999999999999999999999853
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=132.60 Aligned_cols=65 Identities=25% Similarity=0.498 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~ 119 (315)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 44566777899999999999999999999999999999999999999999999999999976543
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.7e-18 Score=130.51 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 44566777899999999999999999999999999999999999999999999999999853
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.74 E-value=2.9e-18 Score=131.57 Aligned_cols=64 Identities=30% Similarity=0.466 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~~ 120 (315)
.+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+.+....
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 4455666999999999999999999999999999999999999999999999999999776543
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=129.79 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 45566777899999999999999999999999999999999999999999999999999854
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.74 E-value=8.1e-18 Score=129.10 Aligned_cols=64 Identities=33% Similarity=0.491 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+....
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667779999999999999999999999999999999999999999999999999987543
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=4.6e-18 Score=135.30 Aligned_cols=70 Identities=29% Similarity=0.491 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHh
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLK 125 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~~~~~lk 125 (315)
..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|++..+.....+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~ 85 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHH
Confidence 4455666799999999999999999999999999999999999999999999999999987665544443
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=4e-18 Score=131.57 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 445666777999999999999999999999999999999999999999999999999998654
No 15
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=132.46 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34556667799999999999999999999999999999999999999999999999999854
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=5.4e-18 Score=122.91 Aligned_cols=57 Identities=32% Similarity=0.553 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
+++|++||..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356778999999999999999999999999999999999999999999999999986
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=4.2e-18 Score=124.96 Aligned_cols=58 Identities=31% Similarity=0.613 Sum_probs=52.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
.+++|++||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3566777999999999999999999999999999999999999999999999999987
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=129.05 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 54 ~~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
++..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345566777899999999999999999999999999999999999999999999999999753
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=4.4e-18 Score=127.97 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 44566677799999999999999999999999999999999999999999999999999853
No 20
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.7e-18 Score=132.03 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 59 rkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
.++++||.+|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999998654
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=6.7e-18 Score=126.67 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
.+++|++||..|+.+||..|..++||+...+..||..|||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3566778999999999999999999999999999999999999999999999999998754
No 22
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=5.5e-18 Score=131.67 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~----~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
+..+++|+.||.+|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345566667999999999999999 999999999999999999999999999999999875
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.72 E-value=3e-18 Score=128.47 Aligned_cols=62 Identities=24% Similarity=0.509 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45667778999999999999999999999999999999999999999999999999998654
No 24
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=128.90 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
++|+++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35667799999999999999999999999999999999999999999999999999864
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=9.2e-18 Score=122.76 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
+++|++||..|+..||..|..++||+...+.+||..|||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999974
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=8.1e-18 Score=126.33 Aligned_cols=61 Identities=33% Similarity=0.634 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
++++|++||..|+..||..|..++||+...+.+||..|||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 3566777999999999999999999999999999999999999999999999999998643
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1.3e-17 Score=128.97 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|++..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34556667999999999999999999999999999999999999999999999999998653
No 28
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.2e-17 Score=126.52 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~-~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
.++|++||..|+.+||..|.. ++||+...+.+||..|||+++||+|||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356778999999999999996 99999999999999999999999999999999999865
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=5.1e-18 Score=126.35 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
.+++|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 455677799999999999999999999999999999999999999999999999999864
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=7.2e-18 Score=130.78 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34566677799999999999999999999999999999999999999999999999999854
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=1.5e-17 Score=126.42 Aligned_cols=61 Identities=26% Similarity=0.479 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
..+++|++||..|+.+||..|..++||+...+.+||..+||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456677799999999999999999999999999999999999999999999999999853
No 32
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=126.44 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
+++|++||..|+.+||..|..++||+...+..||..|||+++||++||||||+|+|++..+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5667789999999999999999999999999999999999999999999999999987554
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=120.23 Aligned_cols=57 Identities=35% Similarity=0.494 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
+++++++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 355677799999999999999999999999999999999999999999999999976
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=1e-17 Score=122.52 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 60 krrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
.|++||..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467799999999999999999999999999999999999999999999999999864
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.3e-18 Score=130.46 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~----~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
..+++|+.||.+|+.+||..|..+ +||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 455566679999999999999999 9999999999999999999999999999999999853
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.4e-17 Score=124.88 Aligned_cols=60 Identities=32% Similarity=0.517 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+++|++||..|+.+||..|..++||+...+.+||..|||++++|+|||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 456677999999999999999999999999999999999999999999999999998643
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.9e-17 Score=125.84 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~-~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+++|++||..|+.+||..|.. ++||+...+.+||..|||+++||+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 356777999999999999995 99999999999999999999999999999999999865
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=1e-17 Score=131.63 Aligned_cols=61 Identities=34% Similarity=0.696 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4556677789999999999999999999999999999999999999999999999999985
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.70 E-value=9.3e-18 Score=134.08 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 345667789999999999999999999999999999999999999999999999999987653
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=120.02 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
+.||..|+..||..|..++||+...|.+||..+||+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 458999999999999999999999999999999999999999999999999985
No 41
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=125.52 Aligned_cols=62 Identities=31% Similarity=0.568 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
+..++.|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 44556677799999999999999999999999999999999999999999999999999854
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=130.00 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~-----~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
...+++|+.||.+|+..|| .|.. ++||+...|.+||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455556669999999999 7999 999999999999999999999999999999999875
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2e-17 Score=132.20 Aligned_cols=63 Identities=35% Similarity=0.590 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+..+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 455666778999999999999999999999999999999999999999999999999998654
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=1.9e-17 Score=121.19 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
.++++++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 455566799999999999999999999999999999999999999999999999976
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=3.1e-17 Score=124.35 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~---~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+..+++|++|+..|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345666777999999999999987 999999999999999999999999999999999998654
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=125.45 Aligned_cols=60 Identities=27% Similarity=0.340 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
.+.|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345777999999999999999999999999999999999999999999999999998543
No 47
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.2e-17 Score=130.21 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 60 krrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+.++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 4457999999999999999999999999999999999999999999999999998543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=124.16 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
.++.|++||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 3556778999999999999999999999999999999999999999999999999998643
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=5.9e-17 Score=118.32 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 60 krrRfT~~Ql~~LE~~F~~---~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
++++||.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677999999999999999 9999999999999999999999999999999999873
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=5.3e-17 Score=123.10 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F---~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
+++|++||..|+.+||..| ..++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5667789999999999999 899999999999999999999999999999999999986543
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1.9e-17 Score=126.16 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F-~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
.+++++++.+|+.+||..| ..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456679999999999999 999999999999999999999999999999999999974
No 52
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.1e-16 Score=127.58 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CCcchhhhHhhhhHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~Lg---------------LserQVqVWFQNRRaK~Kkkq~ 117 (315)
...+++|++||..|+.+||..|+.++||+..+|.+||..|| |++.+|++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34556666799999999999999999999999999999999 9999999999999999998765
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=124.66 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~---~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
...+++|++|+.+|+.+|+.+|.. ++||+..+|.+||..+||+++||+|||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 445666677999999999999987 5999999999999999999999999999999999986554
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.66 E-value=1.2e-16 Score=124.81 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F---~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
+++|++|+..|+.+||..| ..++||+..++.+||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5667789999999999999 899999999999999999999999999999999999986543
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=125.16 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 59 rkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
.+.++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3445599999999999999999999999999999999999999999999999998754
No 56
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=8.5e-17 Score=125.27 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F~~---~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
++++++|+..|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 345666999999999999999 9999999999999999999999999999999999986543
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=6.3e-17 Score=119.60 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F---~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
.++++++|+..|+.+||..| ..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35667779999999999999 89999999999999999999999999999999999986
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-17 Score=124.21 Aligned_cols=57 Identities=40% Similarity=0.602 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHH
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~ 119 (315)
.+|..|+..||..|..++||+...|.+||..|||+++||+|||||||+|+|+++...
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 379999999999999999999999999999999999999999999999999876543
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=2.5e-16 Score=123.39 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~---~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
..+++|++|+.+|+.+||..|.. ++||+..+|.+||..+||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34555677999999999999999 999999999999999999999999999999999873
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=117.94 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (315)
-|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999764
No 61
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=2.5e-16 Score=117.99 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.8
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 66 ~~Ql~~LE~~F-~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
+.|+.+||+.| ..++||+..+|.+||+.|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 578999999999999999999999999999999999863
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=3.2e-16 Score=134.27 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345556669999999999999999999999999999999999999999999999999975
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.61 E-value=3.9e-16 Score=135.43 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 455666679999999999999999999999999999999999999999999999999974
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.4e-16 Score=115.67 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
...+..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999999999999999999999999999999999999998775
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=131.44 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44555666999999999999999999999999999999999999999999999999986
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.60 E-value=4.7e-16 Score=135.71 Aligned_cols=63 Identities=32% Similarity=0.389 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 344555666999999999999999999999999999999999999999999999999998653
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=122.63 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCCcchhhhHhhhhHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~L---------------------gLserQVqVWFQNRRaK~K 113 (315)
+..+++|+.|++.|+.+||..|+.++||+..+|++||..| +|++.+|+|||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3455666679999999999999999999999999999999 7999999999999999999
Q ss_pred HHHH
Q 021250 114 TKQL 117 (315)
Q Consensus 114 kkq~ 117 (315)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8654
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.9e-15 Score=113.49 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~-~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
..+|.|+.|+.+|+..|+..|+. ++||+.+.|..||.+|||++++|+|||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 45566667999999999999999 99999999999999999999999999999997543
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.57 E-value=1.8e-15 Score=130.72 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 021250 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 55 ~~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkk 115 (315)
+.++++|++|+..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3456667779999999999999999999999999999999999999999999999999973
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=2.8e-15 Score=112.52 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHH
Q 021250 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~---~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~~ 120 (315)
+|+.+|+.+|+..|. .++||+..+|.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 599999999999999 9999999999999999999999999999999999998766544
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.55 E-value=1.8e-15 Score=122.20 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CCcchhhhHhhhhHHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKTK 115 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~------------------Lg---LserQVqVWFQNRRaK~Kkk 115 (315)
.+++|+.||..|+.+||..|..++||+...|++||.. || |++.+|+|||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 4445556999999999999999999999999999999 88 99999999999999999876
Q ss_pred HH
Q 021250 116 QL 117 (315)
Q Consensus 116 q~ 117 (315)
+.
T Consensus 89 ~~ 90 (99)
T 1lfb_A 89 HK 90 (99)
T ss_dssp C-
T ss_pred ch
Confidence 54
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=2.8e-15 Score=129.90 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 56 ~~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
..+++|++||..|+..||..|..++||+...|.+||..|||+++||+|||||||+|+|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 45566667999999999999999999999999999999999999999999999999997543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=2.1e-13 Score=122.24 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCcchhhhHhhhhHHHHHH
Q 021250 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 57 ~krkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~Lg---------------------LserQVqVWFQNRRaK~Kk 114 (315)
.+++|+.|+..|+..||..|..++||+...|++||..|+ |++.+|++||||||++.|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 344455599999999999999999999999999999999 9999999999999999875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.36 E-value=9e-13 Score=104.64 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHH
Q 021250 63 RLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~---~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~~ 119 (315)
-|+.+++.+|+.+|.. ++||+..+|.+||..+||+++||++||||+|+|+|+..+++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3899999999999987 89999999999999999999999999999999999876544
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=99.92 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHH
Q 021250 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (315)
Q Consensus 66 ~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK 111 (315)
.+|+.+||.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.23 E-value=3.4e-12 Score=121.50 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
++.++..|+..||+.|+.++||+..+|.+||.++||+++||+|||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44599999999999999999999999999999999999999999999999976
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.21 E-value=9.3e-12 Score=113.45 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=49.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCcchhhhHhhhhHHHH
Q 021250 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (315)
Q Consensus 59 rkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~Lg---------------------LserQVqVWFQNRRaK~ 112 (315)
+.|+.|++.|+.+||..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 144 R~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 144 RNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3344499999999999999999999999999999998 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.82 E-value=3.2e-10 Score=76.11 Aligned_cols=27 Identities=37% Similarity=0.975 Sum_probs=23.1
Q ss_pred chhhhHhhhhHHHHHHHHHHHHHHHHh
Q 021250 99 RQVAVWFQNRRARWKTKQLERDYGVLK 125 (315)
Q Consensus 99 rQVqVWFQNRRaK~Kkkq~~~~~~~lk 125 (315)
+||+|||||||||||+++.++.+..++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999998887665544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.42 E-value=0.071 Score=40.21 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 68 QVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 68 Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
-...|+.+|...+.+.......|+.+.+|+..||+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3578999999999999999999999999999999999953
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.78 E-value=0.57 Score=35.63 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQ 106 (315)
++||.++....-..+.... .....++|+.+|++..+|..|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHH
Confidence 5588887765555553220 12366899999999999999975
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.13 E-value=1.6 Score=30.38 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhh
Q 021250 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQ 106 (315)
+++|+.+....+...+... ........++|+++|+++.+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4569998877665555433 22122266899999999999999964
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.32 E-value=4.1 Score=32.07 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHH
Q 021250 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (315)
Q Consensus 60 krrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK 111 (315)
+|++||.++...+-..+..+.... ..+||+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 466799999887777775554443 3368999999999999998766543
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=75.68 E-value=5.7 Score=29.65 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhh
Q 021250 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (315)
Q Consensus 59 rkrrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQ 106 (315)
+++++++.++....-..+... . ...+||+.+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 345569998865555555422 2 356889999999999999964
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.55 E-value=4 Score=25.72 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
..++.++...+...+... . ...++|+.+|++...|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g--~---s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN--V---SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHhh
Confidence 347887775555555432 2 3568999999999999999753
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.04 E-value=1.7 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhh
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNR 108 (315)
.++.++...+...+... . ...+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 36777766665555433 2 35689999999999999998643
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=67.22 E-value=8.8 Score=28.59 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
++..|..+|.-.|-.. ..-.++|..||++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7888888887765433 245689999999999999987654444443
No 87
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=65.41 E-value=14 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=41.4
Q ss_pred CCCcchhhhHhhhhHH-------HHHHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhcc
Q 021250 95 GLQPRQVAVWFQNRRA-------RWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (315)
Q Consensus 95 gLserQVqVWFQNRRa-------K~Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~ 163 (315)
||+..+|..|=|-||. ..-+++...+...|......|..+.+.|..++..+..|.. .++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d------~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD------AYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 6777777666555542 1112223344566777777788888888888888888887 7777654
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.37 E-value=13 Score=28.23 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhcc
Q 021250 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (315)
Q Consensus 109 RaK~Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~ 163 (315)
|.+.|+++.+. .+......|..++..|..+.+.|..|+. .|+..|.
T Consensus 29 rSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~------~Lr~ll~ 74 (78)
T 1gu4_A 29 KSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELS------TLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTTC
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 45555554433 3334455666666777777777777777 7776553
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.75 E-value=13 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.160 Sum_probs=23.7
Q ss_pred HHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhc
Q 021250 121 YGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (315)
Q Consensus 121 ~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L 162 (315)
...|....+.+...+..|..+...|..|+. .|+..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~------~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVA------QLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHh
Confidence 444555566666666677777777777777 676655
No 90
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=59.27 E-value=38 Score=25.59 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCC--CcchhhhHhh
Q 021250 61 KRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGL--QPRQVAVWFQ 106 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F~~-----~~yps~~~r~eLA~~LgL--serQVqVWFQ 106 (315)
...++.+|+..|...|.. +-+.+..+...+.+.+|+ +..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445999999999999984 457889988888888874 5677777664
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.09 E-value=12 Score=26.70 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhc
Q 021250 121 YGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (315)
Q Consensus 121 ~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L 162 (315)
...|....+.|...+..|..+...|..|+. .|+..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~------~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA------QLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 444555566666666677777777777777 676655
No 92
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.19 E-value=9.1 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.043 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
+++.+..+|...|-.. ..-.++|..+|+++..|+.+...-|.+-+
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888888888776433 23568999999999999998764444433
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.70 E-value=15 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=10.4
Q ss_pred hHHhhhccchHHHHHHHHhhhh
Q 021250 129 DALKLNYDSLQHDNEALLKETI 150 (315)
Q Consensus 129 ~~l~~~~~sl~~en~~L~~E~~ 150 (315)
..+...+..+..+|+.|..++.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555554
No 94
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=56.68 E-value=15 Score=28.52 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhcc
Q 021250 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (315)
Q Consensus 109 RaK~Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~ 163 (315)
|.+.|+++.+. .+......|..++..|+.+.+.|..|+. .|+..|.
T Consensus 29 rSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~------~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELS------TLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 44555544433 2334455566666666666667777776 6666554
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=55.84 E-value=21 Score=27.59 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHH
Q 021250 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRa 110 (315)
...+|+.+..+|.-.++-- .-.++|..||+++..|+.+..+-+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3459999999998765322 2378999999999999988764333
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.39 E-value=18 Score=25.86 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhc
Q 021250 121 YGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (315)
Q Consensus 121 ~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L 162 (315)
...|....+.|...+..|..+...|..|+. .|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~------~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKE------KLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 444555555566666666666666666666 565544
No 97
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.27 E-value=20 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhc
Q 021250 121 YGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (315)
Q Consensus 121 ~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L 162 (315)
...+......|...+..|..+...|..|+. .|++-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~------~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQ------YLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 444555666666667777777777777777 676644
No 98
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=52.70 E-value=22 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHHhCCCcchhhhHhh
Q 021250 61 KRRLSVDQVKALEKNF-EVE-NKLE-PERKVKLAQELGLQPRQVAVWFQ 106 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F-~~~-~yps-~~~r~eLA~~LgLserQVqVWFQ 106 (315)
+++||.++....-..+ ... .+.+ .....++|..+|+++.+|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4569998876544444 322 1222 24577899999999999999964
No 99
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.66 E-value=17 Score=27.47 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~ 112 (315)
.++..+..+|.-.++-- ...++|..||+++..|+.+..+-+.|.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 38999999998863322 246899999999999998876444433
No 100
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=52.20 E-value=23 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
+++.+..+|. .|- ....-.++|..||++...|+.+...-|.+.|
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6677777776 332 2234678999999999999998764444433
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=50.44 E-value=55 Score=25.54 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
+++.+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+-|+
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7788888887765433 235689999999999999988655554443
No 102
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=49.76 E-value=55 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kk 114 (315)
.+++.|..+|.-.|.... .-.++|..+|+++..|+.|...-|.+-++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888887765442 35689999999999999998755554443
No 103
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.15 E-value=23 Score=24.53 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHH
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK 111 (315)
..+++.|..+|...+ ..+ ...++|..+|+++..|..+...-+.+
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 348999999998843 222 34689999999999999887644433
No 104
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=46.89 E-value=10 Score=30.54 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=38.1
Q ss_pred CCCcchhhhHhhhhHH-------HHHHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhcc
Q 021250 95 GLQPRQVAVWFQNRRA-------RWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (315)
Q Consensus 95 gLserQVqVWFQNRRa-------K~Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~ 163 (315)
||++.+|.-.=|-||. +.-+++...+...|......|..+.+.|..++..|..|+. .++.+..
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~------~lk~k~e 96 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD------ALRSKYE 96 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT------SSSSCC-
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 5666665555443331 1112223334556666666777788888888888888887 7777664
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.41 E-value=13 Score=26.10 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=18.7
Q ss_pred hhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhcc
Q 021250 126 ANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (315)
Q Consensus 126 ~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~ 163 (315)
..++.|+.++..|+...+.|.+++. +|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~------el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENK------KLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHh
Confidence 3445555555555566666666666 6666654
No 106
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=45.03 E-value=20 Score=26.85 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHH
Q 021250 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (315)
Q Consensus 69 l~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~~ 118 (315)
+..++-.|+.|+||+++--.. - =.|||-+|+..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-----------a---RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-----------A---RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-----------H---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-----------H---HHHHHHHHHHHHHH
Confidence 455666799999987542110 0 15899999887653
No 107
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=44.85 E-value=14 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
.++..+..+|.-.++- ..-.++|..+|++...|+.+..+-+.|.+
T Consensus 21 ~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4999999999884321 24568999999999999988764444433
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=44.21 E-value=32 Score=24.20 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRa 110 (315)
+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999888852100 0123458999999999999988654333
No 109
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.01 E-value=32 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hh--CCCcchhhhHhhh
Q 021250 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQN 107 (315)
Q Consensus 58 krkrrRfT~~Ql~~LE~~F-~~~~yps~~~r~eLA~----~L--gLserQVqVWFQN 107 (315)
+++|+++|.+|...|-..+ +.++..+.. +||. .+ |++..+|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5567789999999999988 566665543 4555 77 7888899999755
No 110
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=43.90 E-value=8.9 Score=28.48 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.4
Q ss_pred cccccCCCCCCCCc
Q 021250 284 MEEHNFFGDETCNF 297 (315)
Q Consensus 284 ~e~~~~~~~~~c~~ 297 (315)
+|+||+|+||-+.|
T Consensus 59 ~e~~G~f~de~R~f 72 (72)
T 2adl_A 59 IEMNGSFADENKDW 72 (72)
T ss_dssp CSCSCCCSSSCCCC
T ss_pred HHHhCCChHhccCC
Confidence 58899999887766
No 111
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.36 E-value=26 Score=24.36 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRR 109 (315)
+++.+..+|...|-...+ ....-.++|..+|++...|+.+...-+
T Consensus 6 L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 788899999888732111 112346799999999999998765333
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.77 E-value=15 Score=25.94 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
+++.+..+|.-.+. .+ ...++|..+|+++..|+.+...-+.|.+
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 78888888877432 21 3458999999999999988765444443
No 113
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=39.19 E-value=52 Score=26.34 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCcch
Q 021250 60 KKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQ 100 (315)
Q Consensus 60 krrRfT~~Ql~~LE~~F~~-----~~yps~~~r~eLA~~LgLserQ 100 (315)
++.++|.+|+..|...|.. +-+.+..+...+.+.||+.+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 4556999999999999984 4578888888888889876643
No 114
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=39.14 E-value=41 Score=26.01 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
+.++.++...+...+... . ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888887777776533 1 3567899999999999999964
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=38.51 E-value=33 Score=25.21 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK 111 (315)
+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888899999888752100 11235679999999999999987543333
No 116
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.21 E-value=39 Score=24.92 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
.+++.+..+|.-.+.- + .-.++|..+|+++..|+.+..+-|.|.+
T Consensus 29 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3899999999875332 2 2347899999999999988765444433
No 117
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.75 E-value=38 Score=25.11 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhhh
Q 021250 113 KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (315)
Q Consensus 113 Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~ 150 (315)
+-+.++.....|...+..+..++..|..++..|..|+.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777888888888899999999998887
No 118
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.14 E-value=28 Score=29.15 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
+++.+..+|.-.|-.. ....++|..+|+++..|+.+...-|.+.|
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 7888888888776432 24568999999999999988764444443
No 119
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=36.71 E-value=27 Score=28.42 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHH
Q 021250 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (315)
Q Consensus 69 l~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (315)
+..++-.|+.|+||.++- .+|- =.|||.+||.++.
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRqa---RRNRRRRWR~RQr 49 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQA---RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chhh---hHhHHHHHHHHHH
Confidence 345566699999987641 1111 1699999998765
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.27 E-value=43 Score=27.17 Aligned_cols=45 Identities=13% Similarity=-0.063 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 021250 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK~K 113 (315)
+++.+..+|.-.|-.. -.-.++|..+|+++..|+.+...-|.+-|
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6777777776655433 23468999999999999998764444433
No 121
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.88 E-value=32 Score=22.65 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=26.9
Q ss_pred CC--HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhh
Q 021250 64 LS--VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (315)
Q Consensus 64 fT--~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQ 106 (315)
++ .++...+...+... + ...++|..+|++...|..|..
T Consensus 14 l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 14 VESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp ECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55 66666665555432 2 356899999999999999874
No 122
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.50 E-value=1.1e+02 Score=24.47 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
+.++.++...+-..+... . ...++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 458888777776666533 1 3457899999999999999864
No 123
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=33.42 E-value=18 Score=24.15 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 124
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=32.46 E-value=19 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRRa 110 (315)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999876543
No 125
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=31.97 E-value=21 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999987654
No 126
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.90 E-value=41 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHHHHHhhhhhHHhhhccchHHHHHHHHhhhh
Q 021250 119 RDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (315)
Q Consensus 119 ~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~ 150 (315)
.++..|+..+..|+..+..|..+++.|.+++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777777777777777766666554
No 127
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.86 E-value=68 Score=24.66 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--CCcchhhhHhhhhH
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELG--LQPRQVAVWFQNRR 109 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~Lg--LserQVqVWFQNRR 109 (315)
+.++.++...+... ..++..+. .+|+..+| ++...|..|+....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCC
Confidence 34888888777766 44555554 46788888 78999999986443
No 128
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=31.53 E-value=48 Score=23.29 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHH
Q 021250 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRa 110 (315)
.++.+.+..+...... ...+||..+|++...|..|-.+++.
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4888888888665432 2468999999999999999877653
No 129
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.75 E-value=91 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=19.8
Q ss_pred hhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhcccccc
Q 021250 126 ANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLDRDQE 167 (315)
Q Consensus 126 ~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~~~~~ 167 (315)
.+...|......-....+.|.+|+. .|+.+|...+.
T Consensus 99 ~EL~aL~~a~~~DeakI~aL~~Ei~------~Lr~qL~~~R~ 134 (175)
T 3lay_A 99 YEYNALLTASSPDTAKINAVAKEME------SLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3333444333333445566777777 77777765543
No 130
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.08 E-value=32 Score=22.99 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=19.8
Q ss_pred HHHHHHhCCCcchhhhHhhhhHHHH
Q 021250 88 VKLAQELGLQPRQVAVWFQNRRARW 112 (315)
Q Consensus 88 ~eLA~~LgLserQVqVWFQNRRaK~ 112 (315)
.++|..+|+++..|+.+..+-+.|.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5799999999999998876544443
No 131
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=29.99 E-value=23 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||+.+|+++..|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999987655
No 132
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=29.57 E-value=22 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRRa 110 (315)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999877654
No 133
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.55 E-value=64 Score=24.15 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
..||..+..+|.-.++- ....++|..||++++.|+....+
T Consensus 28 ~~Lt~rE~~Vl~l~~~G------~s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 28 DVLTPRECLILQEVEKG------FTNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp -CCCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34999999999877622 13568999999999999876543
No 134
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.61 E-value=1.1e+02 Score=22.77 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
+.++.++...+-..+... + ...++|+.+|++...|..|+..
T Consensus 16 ~~~s~~~r~~i~~~~~~g-~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG-I----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 348888777666666532 2 2457899999999999999863
No 135
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=28.51 E-value=53 Score=25.67 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRRa 110 (315)
..+||..+|++...|..|-.+++.
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 457899999999999999877653
No 136
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.07 E-value=25 Score=24.17 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRRa 110 (315)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999876543
No 137
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.10 E-value=74 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=14.6
Q ss_pred hccchHHHHHHHHhhhhccccchhhhhhcc
Q 021250 134 NYDSLQHDNEALLKETIVHETDHQNKATLD 163 (315)
Q Consensus 134 ~~~sl~~en~~L~~E~~v~~~~~~Lk~~L~ 163 (315)
....|..+|..|..++. .|+..|.
T Consensus 38 ~v~~L~~eN~~L~~ev~------~Lr~~l~ 61 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVA------RLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHC--
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHh
Confidence 33445667777777777 7776653
No 138
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=26.93 E-value=27 Score=24.11 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999987654
No 139
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=26.51 E-value=31 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCcchhhhHhhhhH
Q 021250 86 RKVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 86 ~r~eLA~~LgLserQVqVWFQNRR 109 (315)
...+||+.+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356899999999999999997654
No 140
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.34 E-value=64 Score=27.78 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHH
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK 111 (315)
..+|+.+..+|.-.++- ..-.++|..||++++.|+....+-+.|
T Consensus 174 ~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKG------KTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHHTT------CCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34888888888664321 134678999999999999887654443
No 141
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.99 E-value=82 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhhHHhhhccchHHHHHHHHhhhh
Q 021250 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (315)
Q Consensus 117 ~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~ 150 (315)
++.+...|.+..+.++...+.+.++|+.|..|..
T Consensus 32 LKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 32 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444444444455555556777777777765
No 142
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=25.92 E-value=28 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRRa 110 (315)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999876654
No 143
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=25.60 E-value=28 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987763
No 144
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.28 E-value=1.8e+02 Score=21.18 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhh
Q 021250 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAV 103 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqV 103 (315)
+..+|.++...|++....-..-.+.+=..||..+|=+..+|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHH
Confidence 4459999999999998765543344456688888866666653
No 145
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.97 E-value=71 Score=23.25 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCcchhhhHh
Q 021250 64 LSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWF 105 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~-----~~yps~~~r~eLA~~LgLserQVqVWF 105 (315)
++.++...+...|.. +-+.+..+...+.+.+|++...|+.+|
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 678899999999974 345777777777778888877766555
No 146
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.87 E-value=31 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999987653
No 147
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.60 E-value=1.6e+02 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhh
Q 021250 110 ARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (315)
Q Consensus 110 aK~Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~ 149 (315)
.+.+...++.+...|...+..|......|..++..|...+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445556666667777777777777777666665443
No 148
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.94 E-value=42 Score=23.13 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987765
No 149
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=23.93 E-value=32 Score=25.26 Aligned_cols=23 Identities=17% Similarity=0.638 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||+.+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46799999999999999987644
No 150
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=23.69 E-value=42 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987643
No 151
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.68 E-value=53 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999997765
No 152
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=23.29 E-value=51 Score=23.68 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCcchhhhHhh
Q 021250 63 RLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (315)
Q Consensus 63 RfT~~Ql~~LE~~F~~-----~~yps~~~r~eLA~~LgLserQVqVWFQ 106 (315)
.++.+++..|...|.. +.+++..+...+...+|++...|+.+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3889999999999874 3467888888888888988888777764
No 153
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.62 E-value=1.9e+02 Score=20.40 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhccchHHHHHHHHhhh
Q 021250 113 KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (315)
Q Consensus 113 Kkkq~~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~ 149 (315)
+...++.+...|...+..|......|..+...|..-+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666666655555433
No 154
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.52 E-value=1.9e+02 Score=22.58 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQN 107 (315)
+.++.++...+-..+... . ...++|+.+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~~G--~---s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG--V---RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHHH
Confidence 458888777666666432 2 2457899999999999999863
No 155
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.44 E-value=2.2e+02 Score=23.11 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhh
Q 021250 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (315)
Q Consensus 61 rrRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNR 108 (315)
.|.|+.+++..|.. ....+.+|++-..|+..+...
T Consensus 52 ~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 52 DRIFNEEALKYLEM-------------ILCLKNTGMPIQKIKQFIDWS 86 (148)
T ss_dssp CEEBCHHHHHHHHH-------------HHHHHTTTCCHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhh
Confidence 34599999999833 333477888888888887644
No 156
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.24 E-value=48 Score=23.60 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCcchhhhHhhh
Q 021250 87 KVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQN 107 (315)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457888999999888888876
No 157
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.96 E-value=35 Score=24.14 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRRA 110 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRRa 110 (315)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999877653
No 158
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=21.07 E-value=51 Score=24.14 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCcchhhhHhhh
Q 021250 87 KVKLAQELGLQPRQVAVWFQN 107 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQN 107 (315)
..+||+.||++..-|--|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999854
No 159
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.04 E-value=41 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhHhhhhH
Q 021250 87 KVKLAQELGLQPRQVAVWFQNRR 109 (315)
Q Consensus 87 r~eLA~~LgLserQVqVWFQNRR 109 (315)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 160
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.85 E-value=1.2e+02 Score=26.37 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhh
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNR 108 (315)
|.++..|+..|. .....+.+|++-.+|+..+.++
T Consensus 43 R~y~~~~~~~l~-------------~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 43 RYYTDSQLIHLD-------------LIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp EEEETGGGGHHH-------------HHHHHHHTTCCHHHHHHHTTSC
T ss_pred cccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhC
Confidence 448998888883 3334578888888888888765
No 161
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.38 E-value=76 Score=23.28 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCcchhhhHh
Q 021250 64 LSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWF 105 (315)
Q Consensus 64 fT~~Ql~~LE~~F~~-----~~yps~~~r~eLA~~LgLserQVqVWF 105 (315)
++.++...|+..|.. +-+.+..+...+.+.+|++...|+.+|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 577889999999864 346777777777777888877776655
No 162
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.35 E-value=1.1e+02 Score=26.24 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcchhhhHhhhhHHH
Q 021250 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (315)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yps~~~r~eLA~~LgLserQVqVWFQNRRaK 111 (315)
..+|+.+..+|.-..+ ...-.++|..||++++.|+...++-+.|
T Consensus 172 ~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4599999999866432 1245689999999999999877654443
No 163
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.23 E-value=1.4e+02 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=12.2
Q ss_pred hhHHhhhccchHHHHHHHHhhhh
Q 021250 128 YDALKLNYDSLQHDNEALLKETI 150 (315)
Q Consensus 128 ~~~l~~~~~sl~~en~~L~~E~~ 150 (315)
...+......|..+|..|.+++.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555
No 164
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.12 E-value=1.9e+02 Score=22.08 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=23.9
Q ss_pred HHHHHHHhhhhhHHhhhccchHHHHHHHHhhhhccccchhhhhhc
Q 021250 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (315)
Q Consensus 118 ~~~~~~lk~~~~~l~~~~~sl~~en~~L~~E~~v~~~~~~Lk~~L 162 (315)
+.....|+...+.+..+...+..+...|..++. .+|.||
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~------~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIM------RLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhC
Confidence 444555666666666666666666666666666 666654
Done!