BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021251
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
L+ L + E++D A D + G+ L+G YL+ A +R +A +++ T QN Q+ V
Sbjct: 45 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 104
Query: 61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
+ L LL D TVR KAL AIS L+R + G+ F +G++ L A+ +
Sbjct: 105 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 164
Query: 121 VKFQRKALNLIQYLL 135
K + K+ L+Q LL
Sbjct: 165 QKLKVKSAFLLQNLL 179
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60
L+ L + E+ D A D + G L+G YL+ A +R +A +++ T QN Q+ V
Sbjct: 61 LELLADLCENXDNAADFCQLSGXHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV 120
Query: 61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES 120
+ L LL D TVR KAL AIS L+R + G+ F +G++ L A +
Sbjct: 121 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQQV 180
Query: 121 VKFQRKALNLIQYLL 135
K + K+ L+Q LL
Sbjct: 181 QKLKVKSAFLLQNLL 195
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114
R L + +G P L N P +V A+ + +L+ H + A RLA G +
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283
Query: 115 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
L +VKF + +Q L N ++ G P+ ++++ +
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 124 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 224
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 9 VESIDMANDLHSI----GGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEA 63
V +I NDL + G+ P L L +S NI+ +A ++ I N Q V++A
Sbjct: 236 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 295
Query: 64 NGLEPLLSNFASDPDVTVRTKALGAISS 91
N + PL+ D T + +A AIS+
Sbjct: 296 NLIPPLVKLLEVAEDKT-KKEACWAISN 322
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 125 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 225
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 9 VESIDMANDLHSI----GGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEA 63
V +I NDL + G+ P L L +S NI+ +A ++ I N Q V++A
Sbjct: 237 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 296
Query: 64 NGLEPLLSNFASDPDVTVRTKALGAISS 91
N + PL+ D T + +A AIS+
Sbjct: 297 NLIPPLVKLLEVAEDKT-KKEACWAISN 323
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 125 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 225
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 9 VESIDMANDLHSI----GGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEA 63
V +I NDL + G+ P L L +S NI+ +A ++ I N Q V++A
Sbjct: 237 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 296
Query: 64 NGLEPLLSNFASDPDVTVRTKALGAISS 91
N + PL+ D T + +A AIS+
Sbjct: 297 NLIPPLVKLLEVAEDKT-KKEACWAISN 323
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 123 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 223
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 123 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 223
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 211 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
V++ N +EP+L F S+ +RT A +S+L R KP + ++ L + S
Sbjct: 124 VLQCNAMEPILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161
+ A I YL + V + P+ ++ L S E
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 224
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 9 VESIDMANDLHSI----GGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEA 63
V +I NDL + G+ P L L +S NI+ +A ++ I N Q V++A
Sbjct: 236 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 295
Query: 64 NGLEPLLSNFASDPDVTVRTKALGAISS 91
N + PL+ D T + +A AIS+
Sbjct: 296 NLIPPLVKLLEVAEDKT-KKEACWAISN 322
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%)
Query: 55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114
R L + +G P L P +V A+ + +L+ H + A RLA G +
Sbjct: 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147
Query: 115 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
L +VKF + +Q L N ++ G P+ ++++ +
Sbjct: 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 101 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 159
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 160 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 200
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 100 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 158
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 159 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 199
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 98 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 156
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 157 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 197
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 95 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 153
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 194
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 95 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 153
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 194
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 82 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 140
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 181
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 82 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 140
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 181
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 84 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 142
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 143 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 183
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 97 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 86 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 144
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 145 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 185
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 99 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 157
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 198
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 60 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 119
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 99 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 157
Query: 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160
+VKF + +Q L N ++ G P+ ++++ +
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,686,546
Number of Sequences: 62578
Number of extensions: 319461
Number of successful extensions: 597
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 43
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)