Query 021251
Match_columns 315
No_of_seqs 238 out of 1213
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 4.9E-42 1.1E-46 324.2 21.4 237 2-245 104-342 (342)
2 KOG0166 Karyopherin (importin) 99.9 1.1E-25 2.4E-30 223.0 13.0 212 13-239 143-358 (514)
3 COG5064 SRP1 Karyopherin (impo 99.9 6.3E-25 1.4E-29 206.4 9.6 207 18-239 153-363 (526)
4 PLN03200 cellulose synthase-in 99.8 5E-17 1.1E-21 181.5 21.4 178 3-181 385-562 (2102)
5 PLN03200 cellulose synthase-in 99.7 1.5E-15 3.3E-20 169.8 22.3 178 4-182 427-642 (2102)
6 KOG0166 Karyopherin (importin) 99.7 1.6E-15 3.4E-20 151.1 16.5 176 5-181 219-396 (514)
7 KOG4224 Armadillo repeat prote 99.6 3.2E-14 6.9E-19 135.5 16.9 227 2-244 188-419 (550)
8 cd00020 ARM Armadillo/beta-cat 99.6 4.4E-14 9.6E-19 113.1 14.4 118 17-135 2-119 (120)
9 KOG4224 Armadillo repeat prote 99.5 2E-14 4.3E-19 136.9 8.4 196 4-203 108-305 (550)
10 cd00020 ARM Armadillo/beta-cat 99.5 5.2E-13 1.1E-17 106.8 13.3 119 59-178 2-120 (120)
11 COG5064 SRP1 Karyopherin (impo 99.5 1.6E-13 3.6E-18 129.8 8.6 158 23-181 244-401 (526)
12 KOG2160 Armadillo/beta-catenin 99.2 7.7E-10 1.7E-14 105.7 17.3 175 3-181 66-243 (342)
13 PF04826 Arm_2: Armadillo-like 99.1 1.4E-09 3E-14 101.1 13.9 156 19-181 9-166 (254)
14 PF10508 Proteasom_PSMB: Prote 99.1 6.7E-09 1.4E-13 105.3 17.4 157 21-179 76-232 (503)
15 PF05804 KAP: Kinesin-associat 99.0 8E-09 1.7E-13 107.9 17.4 191 4-203 272-463 (708)
16 KOG4199 Uncharacterized conser 98.9 2.5E-08 5.5E-13 94.8 15.5 159 16-176 277-442 (461)
17 KOG4199 Uncharacterized conser 98.8 1.9E-07 4.2E-12 88.9 17.5 169 13-183 232-408 (461)
18 PF10508 Proteasom_PSMB: Prote 98.8 5.3E-07 1.1E-11 91.6 21.4 178 4-184 100-284 (503)
19 PF05804 KAP: Kinesin-associat 98.8 3.2E-07 7E-12 96.0 18.4 168 5-181 314-482 (708)
20 PF04826 Arm_2: Armadillo-like 98.8 2.9E-07 6.4E-12 85.6 16.1 161 14-181 46-208 (254)
21 KOG1293 Proteins containing ar 98.7 2E-07 4.4E-12 94.7 14.3 170 12-182 367-537 (678)
22 PRK09687 putative lyase; Provi 98.5 1.9E-06 4.1E-11 81.3 14.4 152 3-176 26-186 (280)
23 PF03224 V-ATPase_H_N: V-ATPas 98.5 4.3E-06 9.3E-11 79.7 14.6 177 3-182 79-273 (312)
24 KOG1517 Guanine nucleotide bin 98.4 2.8E-06 6.1E-11 90.2 13.9 167 14-180 503-673 (1387)
25 KOG0168 Putative ubiquitin fus 98.4 3.6E-06 7.7E-11 87.9 12.8 175 2-181 186-367 (1051)
26 KOG1048 Neural adherens juncti 98.3 5.5E-06 1.2E-10 86.0 12.1 173 24-204 235-427 (717)
27 KOG1048 Neural adherens juncti 98.2 8E-06 1.7E-10 84.8 11.4 115 66-181 235-352 (717)
28 PF00514 Arm: Armadillo/beta-c 98.2 2.5E-06 5.5E-11 56.9 4.6 41 53-94 1-41 (41)
29 PF08045 CDC14: Cell division 98.1 4.4E-05 9.6E-10 71.0 12.7 102 35-136 104-207 (257)
30 KOG4500 Rho/Rac GTPase guanine 98.1 9.6E-05 2.1E-09 72.8 15.0 140 35-176 55-207 (604)
31 PF05918 API5: Apoptosis inhib 98.1 9.4E-05 2E-09 75.5 15.3 202 2-233 2-209 (556)
32 PRK09687 putative lyase; Provi 98.1 2.9E-05 6.3E-10 73.2 10.8 128 23-176 91-219 (280)
33 cd00256 VATPase_H VATPase_H, r 98.1 0.00022 4.9E-09 71.0 17.5 226 4-238 77-316 (429)
34 KOG1293 Proteins containing ar 98.0 0.00023 5E-09 72.9 17.0 137 9-148 408-545 (678)
35 PF12348 CLASP_N: CLASP N term 98.0 4.9E-05 1.1E-09 68.5 11.1 155 23-184 54-212 (228)
36 PF13513 HEAT_EZ: HEAT-like re 98.0 1.3E-05 2.8E-10 56.5 5.7 55 36-92 1-55 (55)
37 PF13646 HEAT_2: HEAT repeats; 98.0 1.6E-05 3.5E-10 60.6 6.5 86 24-132 1-88 (88)
38 KOG2171 Karyopherin (importin) 98.0 0.00052 1.1E-08 74.1 19.7 151 27-181 353-507 (1075)
39 PF00514 Arm: Armadillo/beta-c 98.0 6.8E-06 1.5E-10 54.8 3.0 39 13-51 3-41 (41)
40 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00017 3.6E-09 75.3 14.4 143 17-160 116-265 (970)
41 KOG3678 SARM protein (with ste 97.9 0.0001 2.2E-09 73.2 11.9 159 19-180 177-338 (832)
42 PF09759 Atx10homo_assoc: Spin 97.9 5.1E-05 1.1E-09 61.1 8.1 67 38-104 2-69 (102)
43 KOG4500 Rho/Rac GTPase guanine 97.9 0.00014 2.9E-09 71.8 12.2 176 2-181 245-434 (604)
44 KOG2122 Beta-catenin-binding p 97.9 6E-05 1.3E-09 82.5 9.8 172 10-181 381-604 (2195)
45 PF13646 HEAT_2: HEAT repeats; 97.8 4.5E-05 9.8E-10 58.1 6.0 87 66-174 1-88 (88)
46 PRK13800 putative oxidoreducta 97.8 0.00065 1.4E-08 73.7 15.8 136 23-180 622-773 (897)
47 KOG2171 Karyopherin (importin) 97.7 0.0015 3.1E-08 70.8 17.5 148 24-176 391-547 (1075)
48 PF03224 V-ATPase_H_N: V-ATPas 97.7 0.00024 5.3E-09 67.7 10.5 144 22-167 146-303 (312)
49 KOG0168 Putative ubiquitin fus 97.7 0.0008 1.7E-08 70.9 14.1 176 4-184 235-419 (1051)
50 PRK13800 putative oxidoreducta 97.7 0.00069 1.5E-08 73.5 14.4 132 23-176 715-865 (897)
51 PF01602 Adaptin_N: Adaptin N 97.7 0.00077 1.7E-08 67.8 13.5 145 24-182 81-225 (526)
52 cd00256 VATPase_H VATPase_H, r 97.6 0.0021 4.5E-08 64.2 15.5 176 4-180 167-427 (429)
53 smart00185 ARM Armadillo/beta- 97.5 0.00015 3.3E-09 47.3 4.4 39 13-51 3-41 (41)
54 PF11841 DUF3361: Domain of un 97.5 0.0014 3.1E-08 56.8 11.6 127 15-142 4-137 (160)
55 PTZ00429 beta-adaptin; Provisi 97.5 0.0048 1E-07 65.6 17.2 144 23-182 69-212 (746)
56 KOG1517 Guanine nucleotide bin 97.5 0.001 2.2E-08 71.3 11.7 168 14-181 546-735 (1387)
57 KOG4646 Uncharacterized conser 97.5 0.0015 3.3E-08 55.5 10.4 130 25-157 19-149 (173)
58 PF13513 HEAT_EZ: HEAT-like re 97.4 0.0004 8.6E-09 48.8 5.9 55 79-134 1-55 (55)
59 PF01602 Adaptin_N: Adaptin N 97.4 0.0035 7.5E-08 63.1 14.8 138 22-176 42-179 (526)
60 KOG0946 ER-Golgi vesicle-tethe 97.4 0.0025 5.5E-08 66.8 13.8 161 20-181 59-244 (970)
61 PF09759 Atx10homo_assoc: Spin 97.4 0.00067 1.5E-08 54.6 7.2 68 81-148 2-71 (102)
62 PF05536 Neurochondrin: Neuroc 97.3 0.0037 8E-08 64.3 13.9 158 18-180 46-215 (543)
63 PF05536 Neurochondrin: Neuroc 97.3 0.021 4.6E-07 58.8 18.9 179 24-207 7-197 (543)
64 COG5369 Uncharacterized conser 97.3 0.001 2.2E-08 67.3 8.2 136 42-178 409-545 (743)
65 PF11698 V-ATPase_H_C: V-ATPas 97.2 0.0007 1.5E-08 56.0 5.6 74 64-137 43-116 (119)
66 KOG2759 Vacuolar H+-ATPase V1 97.2 0.0063 1.4E-07 59.9 13.0 154 22-181 114-274 (442)
67 smart00185 ARM Armadillo/beta- 97.2 0.00086 1.9E-08 43.6 4.8 39 55-94 3-41 (41)
68 KOG0213 Splicing factor 3b, su 97.1 0.0029 6.2E-08 66.1 9.7 151 27-180 804-956 (1172)
69 KOG2759 Vacuolar H+-ATPase V1 97.1 0.012 2.5E-07 58.1 13.4 166 14-180 190-440 (442)
70 PF08045 CDC14: Cell division 97.1 0.012 2.7E-07 54.9 13.0 104 78-181 104-210 (257)
71 KOG1222 Kinesin associated pro 97.1 0.031 6.6E-07 56.3 16.4 167 6-179 451-622 (791)
72 KOG2122 Beta-catenin-binding p 97.0 0.02 4.4E-07 63.7 16.1 174 4-177 217-422 (2195)
73 PTZ00429 beta-adaptin; Provisi 97.0 0.01 2.2E-07 63.3 13.7 145 24-179 142-286 (746)
74 TIGR02270 conserved hypothetic 96.9 0.01 2.2E-07 59.1 11.8 130 23-176 55-205 (410)
75 PF12348 CLASP_N: CLASP N term 96.9 0.073 1.6E-06 47.8 16.1 188 32-234 17-210 (228)
76 KOG1241 Karyopherin (importin) 96.8 0.039 8.5E-07 57.9 15.3 154 29-184 371-536 (859)
77 COG5181 HSH155 U2 snRNP splice 96.8 0.0054 1.2E-07 63.0 8.5 150 25-179 607-760 (975)
78 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0054 1.2E-07 50.7 6.0 72 109-180 45-117 (119)
79 COG5369 Uncharacterized conser 96.5 0.0067 1.4E-07 61.5 7.4 156 22-179 431-595 (743)
80 PF10165 Ric8: Guanine nucleot 96.5 0.047 1E-06 54.9 13.4 255 1-268 1-317 (446)
81 COG1413 FOG: HEAT repeat [Ener 96.5 0.034 7.4E-07 52.9 11.6 106 65-179 106-243 (335)
82 PF12460 MMS19_C: RNAPII trans 96.4 0.036 7.9E-07 55.0 11.9 110 26-139 275-397 (415)
83 KOG1222 Kinesin associated pro 96.4 0.025 5.5E-07 56.9 10.1 110 12-126 335-445 (791)
84 TIGR02270 conserved hypothetic 96.4 0.18 3.8E-06 50.3 16.2 171 24-211 88-299 (410)
85 PF02985 HEAT: HEAT repeat; I 96.3 0.0076 1.6E-07 37.6 3.9 29 24-52 2-30 (31)
86 PF06371 Drf_GBD: Diaphanous G 96.3 0.02 4.2E-07 49.9 7.9 110 65-177 67-186 (187)
87 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.015 3.3E-07 46.3 6.5 66 23-93 28-95 (97)
88 KOG3678 SARM protein (with ste 96.2 0.051 1.1E-06 54.6 11.3 123 13-137 213-337 (832)
89 COG5096 Vesicle coat complex, 96.2 0.16 3.4E-06 54.1 15.2 151 17-179 33-196 (757)
90 PF12717 Cnd1: non-SMC mitotic 96.2 0.099 2.1E-06 45.8 11.8 96 78-183 1-98 (178)
91 PF13251 DUF4042: Domain of un 96.1 0.034 7.4E-07 49.4 8.7 144 37-181 1-177 (182)
92 PF11841 DUF3361: Domain of un 96.1 0.24 5.2E-06 43.1 13.4 125 57-182 4-135 (160)
93 PF14664 RICTOR_N: Rapamycin-i 96.1 0.094 2E-06 51.6 12.4 158 19-181 105-272 (371)
94 KOG4413 26S proteasome regulat 95.9 0.17 3.7E-06 49.0 13.1 152 24-177 84-242 (524)
95 KOG1059 Vesicle coat complex A 95.9 0.26 5.7E-06 51.8 15.2 62 114-180 306-367 (877)
96 PF12717 Cnd1: non-SMC mitotic 95.9 0.3 6.4E-06 42.7 13.8 131 35-179 1-140 (178)
97 KOG2023 Nuclear transport rece 95.9 0.04 8.8E-07 57.2 9.1 149 29-184 97-250 (885)
98 KOG2023 Nuclear transport rece 95.9 0.11 2.4E-06 54.2 12.0 152 24-180 130-287 (885)
99 KOG4646 Uncharacterized conser 95.7 0.12 2.5E-06 44.2 9.7 118 64-183 16-133 (173)
100 PF11707 Npa1: Ribosome 60S bi 95.6 0.5 1.1E-05 45.6 15.2 161 24-184 58-243 (330)
101 KOG1789 Endocytosis protein RM 95.5 0.24 5.2E-06 54.2 13.2 132 2-137 1746-1884(2235)
102 KOG1991 Nuclear transport rece 95.5 0.069 1.5E-06 57.5 9.3 96 4-101 418-539 (1010)
103 KOG1062 Vesicle coat complex A 95.5 0.25 5.4E-06 52.4 13.1 166 25-198 145-369 (866)
104 PF14664 RICTOR_N: Rapamycin-i 95.5 0.63 1.4E-05 45.8 15.4 149 27-181 30-179 (371)
105 PF12719 Cnd3: Nuclear condens 95.4 0.084 1.8E-06 50.0 9.0 111 22-138 26-145 (298)
106 PF05004 IFRD: Interferon-rela 95.4 2.4 5.2E-05 40.6 18.9 150 24-177 88-256 (309)
107 PF06025 DUF913: Domain of Unk 95.4 0.27 5.9E-06 48.5 12.7 98 22-120 105-209 (379)
108 PF08569 Mo25: Mo25-like; Int 95.2 0.57 1.2E-05 45.5 14.1 183 34-224 135-326 (335)
109 KOG1824 TATA-binding protein-i 95.2 0.63 1.4E-05 50.4 15.1 161 26-187 861-1045(1233)
110 cd03569 VHS_Hrs_Vps27p VHS dom 95.1 0.05 1.1E-06 46.3 5.8 73 23-95 42-115 (142)
111 KOG1061 Vesicle coat complex A 95.1 0.21 4.5E-06 52.6 11.3 143 23-181 50-192 (734)
112 PF12755 Vac14_Fab1_bd: Vacuol 95.1 0.23 5E-06 39.5 9.1 93 39-135 3-95 (97)
113 PF14668 RICTOR_V: Rapamycin-i 95.0 0.099 2.1E-06 39.6 6.4 57 39-96 4-60 (73)
114 KOG1058 Vesicle coat complex C 95.0 0.78 1.7E-05 48.6 14.8 153 24-181 136-349 (948)
115 PF10165 Ric8: Guanine nucleot 94.8 0.42 9.1E-06 48.1 12.4 129 53-184 11-174 (446)
116 KOG0414 Chromosome condensatio 94.8 0.33 7.1E-06 53.4 12.1 146 21-181 917-1067(1251)
117 COG1413 FOG: HEAT repeat [Ener 94.8 0.33 7.2E-06 46.1 11.2 136 22-180 43-211 (335)
118 KOG1824 TATA-binding protein-i 94.8 0.6 1.3E-05 50.6 13.7 108 23-140 933-1040(1233)
119 PF12460 MMS19_C: RNAPII trans 94.8 1.6 3.4E-05 43.3 16.3 114 65-184 272-400 (415)
120 KOG2259 Uncharacterized conser 94.8 0.31 6.8E-06 50.8 11.3 151 24-180 236-441 (823)
121 PF08167 RIX1: rRNA processing 94.7 0.32 7E-06 42.2 10.0 114 24-141 27-148 (165)
122 PF06371 Drf_GBD: Diaphanous G 94.7 0.38 8.2E-06 41.7 10.5 109 24-135 68-186 (187)
123 PF11701 UNC45-central: Myosin 94.7 0.16 3.4E-06 43.8 7.8 145 23-174 4-155 (157)
124 KOG1241 Karyopherin (importin) 94.4 0.21 4.5E-06 52.7 9.2 154 21-179 124-289 (859)
125 KOG4413 26S proteasome regulat 94.2 3.4 7.4E-05 40.3 16.3 208 5-220 106-327 (524)
126 KOG1058 Vesicle coat complex C 94.2 0.78 1.7E-05 48.6 12.8 107 21-138 242-348 (948)
127 KOG4535 HEAT and armadillo rep 94.2 0.16 3.5E-06 51.2 7.6 173 25-207 436-627 (728)
128 PF04869 Uso1_p115_head: Uso1 94.1 1.4 3E-05 42.4 13.5 159 66-233 36-231 (312)
129 cd03567 VHS_GGA VHS domain fam 94.0 0.15 3.1E-06 43.4 5.9 72 23-94 39-116 (139)
130 cd03561 VHS VHS domain family; 94.0 0.51 1.1E-05 39.4 9.2 94 83-181 18-115 (133)
131 KOG2734 Uncharacterized conser 93.9 4.9 0.00011 40.5 17.1 163 16-180 218-402 (536)
132 KOG2259 Uncharacterized conser 93.9 0.35 7.6E-06 50.4 9.4 141 23-175 282-472 (823)
133 cd03561 VHS VHS domain family; 93.8 0.49 1.1E-05 39.5 8.9 74 23-96 38-114 (133)
134 cd03568 VHS_STAM VHS domain fa 93.8 0.17 3.7E-06 43.2 6.1 74 23-96 38-112 (144)
135 smart00288 VHS Domain present 93.8 0.19 4.2E-06 42.1 6.3 73 23-95 38-112 (133)
136 cd03569 VHS_Hrs_Vps27p VHS dom 93.6 0.48 1E-05 40.3 8.4 108 68-180 7-116 (142)
137 PF04869 Uso1_p115_head: Uso1 93.4 3.7 8E-05 39.5 15.0 181 20-204 32-253 (312)
138 KOG3036 Protein involved in ce 93.3 2.8 6E-05 39.2 13.4 146 35-180 91-249 (293)
139 PF08167 RIX1: rRNA processing 93.3 1.3 2.9E-05 38.3 11.0 115 65-184 26-149 (165)
140 KOG2999 Regulator of Rac1, req 93.2 2.4 5.2E-05 43.7 13.8 157 25-183 86-247 (713)
141 KOG1789 Endocytosis protein RM 93.0 1.1 2.5E-05 49.3 11.8 142 37-181 1740-1886(2235)
142 KOG1062 Vesicle coat complex A 93.0 0.59 1.3E-05 49.7 9.6 135 35-177 247-413 (866)
143 KOG2973 Uncharacterized conser 92.9 1.9 4.2E-05 41.4 12.0 149 25-181 6-164 (353)
144 KOG1059 Vesicle coat complex A 92.9 0.45 9.8E-06 50.1 8.5 111 13-139 140-251 (877)
145 COG5096 Vesicle coat complex, 92.8 1.8 3.8E-05 46.4 13.0 68 24-95 129-196 (757)
146 cd03568 VHS_STAM VHS domain fa 92.8 0.94 2E-05 38.6 9.2 93 83-180 18-112 (144)
147 KOG2734 Uncharacterized conser 92.8 7.4 0.00016 39.3 16.3 173 8-181 111-309 (536)
148 smart00288 VHS Domain present 92.8 0.75 1.6E-05 38.5 8.4 93 83-180 18-113 (133)
149 KOG1991 Nuclear transport rece 92.8 1.6 3.6E-05 47.4 12.7 168 41-220 391-570 (1010)
150 PF11865 DUF3385: Domain of un 92.4 1.4 2.9E-05 38.2 9.7 144 24-178 12-157 (160)
151 KOG1020 Sister chromatid cohes 92.2 3.3 7.2E-05 47.1 14.4 107 26-141 820-926 (1692)
152 KOG1242 Protein containing ada 92.2 3.7 7.9E-05 42.5 13.9 151 14-179 287-445 (569)
153 PF00790 VHS: VHS domain; Int 92.2 0.16 3.5E-06 42.8 3.7 71 23-93 43-117 (140)
154 KOG1061 Vesicle coat complex A 92.2 0.59 1.3E-05 49.3 8.4 70 24-97 123-192 (734)
155 KOG2137 Protein kinase [Signal 92.2 1.3 2.8E-05 46.7 10.8 139 18-164 385-523 (700)
156 PF04078 Rcd1: Cell differenti 92.2 1.5 3.3E-05 41.1 10.2 177 4-181 15-221 (262)
157 PF02985 HEAT: HEAT repeat; I 92.1 0.25 5.3E-06 30.6 3.5 30 150-179 1-30 (31)
158 COG5215 KAP95 Karyopherin (imp 92.1 4.4 9.5E-05 42.1 14.0 167 30-204 374-551 (858)
159 KOG0212 Uncharacterized conser 92.0 0.91 2E-05 46.7 9.1 208 25-245 211-438 (675)
160 KOG1820 Microtubule-associated 92.0 1.6 3.5E-05 47.2 11.5 166 3-180 272-445 (815)
161 COG5215 KAP95 Karyopherin (imp 91.9 3.5 7.6E-05 42.8 13.1 149 28-184 100-256 (858)
162 cd03567 VHS_GGA VHS domain fam 91.8 1.3 2.8E-05 37.6 8.7 94 82-180 18-118 (139)
163 PF13764 E3_UbLigase_R4: E3 ub 91.7 1.8 4E-05 46.7 11.6 127 15-142 110-264 (802)
164 PF05918 API5: Apoptosis inhib 91.6 3 6.4E-05 43.2 12.6 99 23-135 60-161 (556)
165 KOG0213 Splicing factor 3b, su 91.5 1.2 2.6E-05 47.3 9.6 131 70-207 805-942 (1172)
166 KOG1020 Sister chromatid cohes 91.5 6 0.00013 45.1 15.4 173 38-237 793-965 (1692)
167 PF00790 VHS: VHS domain; Int 91.3 1.5 3.3E-05 36.9 8.6 94 82-180 22-120 (140)
168 PF06025 DUF913: Domain of Unk 91.1 12 0.00025 37.1 15.8 157 5-162 8-209 (379)
169 KOG2611 Neurochondrin/leucine- 91.0 18 0.0004 37.0 16.9 198 26-237 15-230 (698)
170 KOG1248 Uncharacterized conser 91.0 5.5 0.00012 44.2 14.4 152 25-181 741-901 (1176)
171 KOG1242 Protein containing ada 90.7 12 0.00026 38.8 15.8 156 25-187 137-292 (569)
172 KOG3036 Protein involved in ce 90.7 15 0.00032 34.5 15.2 132 4-136 102-247 (293)
173 COG5181 HSH155 U2 snRNP splice 90.7 0.37 8E-06 50.1 4.9 71 21-95 687-760 (975)
174 KOG2025 Chromosome condensatio 90.6 1.3 2.7E-05 46.9 8.7 115 9-131 73-188 (892)
175 KOG1077 Vesicle coat complex A 90.4 11 0.00023 40.2 15.2 166 15-181 179-401 (938)
176 KOG1060 Vesicle coat complex A 90.3 5.9 0.00013 42.5 13.3 135 24-174 394-529 (968)
177 PF08569 Mo25: Mo25-like; Int 90.3 2.9 6.3E-05 40.6 10.6 165 14-182 68-242 (335)
178 KOG2032 Uncharacterized conser 90.1 7.3 0.00016 39.7 13.3 116 18-136 250-371 (533)
179 KOG1248 Uncharacterized conser 89.9 15 0.00032 41.0 16.5 147 29-182 704-860 (1176)
180 PF12830 Nipped-B_C: Sister ch 89.8 4.6 0.0001 35.6 10.7 68 24-100 10-80 (187)
181 KOG1077 Vesicle coat complex A 89.6 5.1 0.00011 42.5 12.1 133 27-168 261-423 (938)
182 KOG0212 Uncharacterized conser 89.2 4 8.8E-05 42.2 10.9 117 21-140 290-410 (675)
183 PF04078 Rcd1: Cell differenti 89.2 4.5 9.8E-05 37.9 10.6 143 2-146 71-227 (262)
184 KOG1060 Vesicle coat complex A 89.1 11 0.00023 40.6 14.2 159 7-179 39-210 (968)
185 PF11701 UNC45-central: Myosin 88.4 1.2 2.7E-05 38.2 6.0 101 30-132 51-155 (157)
186 KOG2956 CLIP-associating prote 88.2 15 0.00033 37.2 14.0 145 25-180 332-479 (516)
187 KOG1967 DNA repair/transcripti 88.1 2.7 5.8E-05 45.6 9.2 146 23-172 868-1018(1030)
188 KOG1943 Beta-tubulin folding c 88.0 7.3 0.00016 43.0 12.4 147 23-179 342-501 (1133)
189 KOG1566 Conserved protein Mo25 87.7 28 0.0006 33.7 16.1 173 45-224 148-329 (342)
190 KOG1820 Microtubule-associated 87.6 36 0.00079 37.0 17.4 163 30-207 261-424 (815)
191 KOG2611 Neurochondrin/leucine- 87.6 14 0.00031 37.8 13.3 125 7-133 37-182 (698)
192 PF14500 MMS19_N: Dos2-interac 87.5 6.6 0.00014 36.8 10.6 140 27-177 4-152 (262)
193 COG5231 VMA13 Vacuolar H+-ATPa 87.4 5.2 0.00011 38.9 9.8 72 108-179 357-429 (432)
194 KOG2999 Regulator of Rac1, req 87.3 6.9 0.00015 40.5 11.1 139 3-142 105-248 (713)
195 PF05004 IFRD: Interferon-rela 87.0 29 0.00063 33.2 16.1 120 13-136 121-257 (309)
196 PF12719 Cnd3: Nuclear condens 86.9 5.3 0.00011 37.7 9.8 111 64-180 26-145 (298)
197 PF04063 DUF383: Domain of unk 86.6 5.8 0.00013 35.5 9.3 128 31-160 4-158 (192)
198 KOG2274 Predicted importin 9 [ 86.5 16 0.00035 39.8 13.8 228 23-271 572-812 (1005)
199 KOG4653 Uncharacterized conser 86.2 27 0.00059 38.0 15.2 171 2-183 748-923 (982)
200 KOG0567 HEAT repeat-containing 86.2 12 0.00026 35.4 11.3 28 23-50 68-97 (289)
201 KOG0915 Uncharacterized conser 86.2 24 0.00052 40.6 15.3 155 24-183 1000-1165(1702)
202 PF14225 MOR2-PAG1_C: Cell mor 86.2 10 0.00022 35.6 11.0 143 17-179 106-255 (262)
203 PF10363 DUF2435: Protein of u 86.1 2.6 5.7E-05 33.1 6.1 73 110-184 6-78 (92)
204 COG5231 VMA13 Vacuolar H+-ATPa 86.1 0.69 1.5E-05 44.7 3.2 118 20-137 277-429 (432)
205 COG5098 Chromosome condensatio 86.1 4.5 9.7E-05 43.0 9.2 113 24-140 301-419 (1128)
206 KOG1832 HIV-1 Vpr-binding prot 85.9 1.6 3.5E-05 47.3 6.0 156 13-181 592-776 (1516)
207 PF14668 RICTOR_V: Rapamycin-i 85.9 2.8 6.1E-05 31.7 5.9 67 82-150 4-71 (73)
208 KOG4535 HEAT and armadillo rep 85.7 4.7 0.0001 41.1 8.9 148 32-181 6-182 (728)
209 cd03565 VHS_Tom1 VHS domain fa 85.5 3 6.6E-05 35.3 6.6 73 23-95 39-116 (141)
210 cd00197 VHS_ENTH_ANTH VHS, ENT 85.4 7.4 0.00016 31.2 8.6 92 81-177 16-114 (115)
211 PF01365 RYDR_ITPR: RIH domain 85.4 2.1 4.6E-05 38.2 5.9 115 17-137 38-170 (207)
212 PF14726 RTTN_N: Rotatin, an a 84.9 4.9 0.00011 32.1 7.2 93 37-131 2-95 (98)
213 PF12397 U3snoRNP10: U3 small 84.9 4.9 0.00011 32.7 7.4 68 24-96 8-76 (121)
214 KOG2973 Uncharacterized conser 84.3 5.5 0.00012 38.4 8.3 107 67-181 6-114 (353)
215 PF13251 DUF4042: Domain of un 84.3 10 0.00022 33.7 9.6 116 23-139 40-177 (182)
216 KOG2274 Predicted importin 9 [ 83.3 7.6 0.00017 42.2 9.7 107 3-110 595-705 (1005)
217 PF12463 DUF3689: Protein of u 83.0 21 0.00045 34.3 11.8 128 56-183 1-178 (303)
218 KOG1967 DNA repair/transcripti 82.6 26 0.00057 38.3 13.3 117 64-184 867-988 (1030)
219 KOG4151 Myosin assembly protei 82.2 8.2 0.00018 41.2 9.4 155 17-173 579-736 (748)
220 COG5218 YCG1 Chromosome conden 82.0 5.7 0.00012 41.4 7.9 100 22-128 91-191 (885)
221 KOG4151 Myosin assembly protei 81.8 6 0.00013 42.2 8.2 140 40-181 560-702 (748)
222 COG5240 SEC21 Vesicle coat com 81.7 7.3 0.00016 40.6 8.5 101 32-135 423-554 (898)
223 KOG3665 ZYG-1-like serine/thre 81.7 35 0.00076 36.5 14.1 116 88-207 494-613 (699)
224 PF04063 DUF383: Domain of unk 81.0 21 0.00046 31.9 10.5 101 80-181 10-135 (192)
225 KOG1087 Cytosolic sorting prot 80.9 4.4 9.5E-05 41.2 6.7 67 25-91 41-109 (470)
226 KOG1240 Protein kinase contain 80.8 16 0.00034 41.1 11.1 111 65-181 618-728 (1431)
227 KOG2199 Signal transducing ada 80.8 17 0.00036 36.2 10.3 128 66-205 9-138 (462)
228 KOG2062 26S proteasome regulat 80.7 29 0.00062 37.3 12.5 138 21-181 517-657 (929)
229 COG5209 RCD1 Uncharacterized p 80.7 10 0.00022 35.2 8.4 176 3-178 67-268 (315)
230 PF10363 DUF2435: Protein of u 80.5 5.3 0.00011 31.4 5.7 72 24-98 5-76 (92)
231 KOG2933 Uncharacterized conser 80.4 6.8 0.00015 37.7 7.4 98 28-135 135-233 (334)
232 COG5116 RPN2 26S proteasome re 80.1 23 0.0005 37.1 11.4 128 27-177 521-649 (926)
233 KOG0414 Chromosome condensatio 80.1 9.5 0.00021 42.5 9.2 115 24-142 314-434 (1251)
234 cd00197 VHS_ENTH_ANTH VHS, ENT 79.9 12 0.00027 29.9 7.9 69 23-91 38-112 (115)
235 cd03572 ENTH_epsin_related ENT 79.5 13 0.00027 31.0 7.9 88 1-93 21-118 (122)
236 COG5098 Chromosome condensatio 79.5 15 0.00033 39.2 10.1 145 21-181 890-1040(1128)
237 cd03565 VHS_Tom1 VHS domain fa 79.2 17 0.00037 30.7 8.9 94 82-180 18-117 (141)
238 KOG1240 Protein kinase contain 78.5 13 0.00027 41.8 9.5 89 2-93 444-536 (1431)
239 KOG2025 Chromosome condensatio 76.1 52 0.0011 35.3 12.8 129 36-174 60-189 (892)
240 KOG2062 26S proteasome regulat 75.3 16 0.00034 39.2 8.9 113 32-162 565-678 (929)
241 PF01347 Vitellogenin_N: Lipop 75.3 27 0.00058 36.2 10.8 121 34-175 447-586 (618)
242 KOG2032 Uncharacterized conser 75.0 39 0.00084 34.6 11.2 151 62-224 252-414 (533)
243 PF13764 E3_UbLigase_R4: E3 ub 74.9 1E+02 0.0022 33.7 15.1 124 60-184 113-264 (802)
244 PF10521 DUF2454: Protein of u 74.8 42 0.0009 31.5 11.1 114 65-179 120-254 (282)
245 PF10521 DUF2454: Protein of u 74.5 43 0.00092 31.5 11.1 72 23-94 120-203 (282)
246 PF08324 PUL: PUL domain; Int 74.2 24 0.00051 32.5 9.2 178 3-183 42-236 (268)
247 cd03572 ENTH_epsin_related ENT 73.5 25 0.00055 29.2 8.2 90 84-178 20-119 (122)
248 COG5209 RCD1 Uncharacterized p 73.2 24 0.00051 32.9 8.5 90 5-96 124-220 (315)
249 KOG4653 Uncharacterized conser 73.1 31 0.00066 37.6 10.4 104 28-133 853-961 (982)
250 KOG1822 Uncharacterized conser 73.1 13 0.00029 43.4 8.2 112 24-138 878-990 (2067)
251 PF01365 RYDR_ITPR: RIH domain 73.0 5.7 0.00012 35.4 4.5 126 54-184 33-175 (207)
252 PF08506 Cse1: Cse1; InterPro 72.6 40 0.00086 33.2 10.7 131 35-173 224-370 (370)
253 KOG0413 Uncharacterized conser 72.5 18 0.00038 40.0 8.6 93 35-137 944-1036(1529)
254 PF06012 DUF908: Domain of Unk 72.0 16 0.00035 35.2 7.7 62 38-100 238-303 (329)
255 KOG2676 Uncharacterized conser 71.5 4.7 0.0001 39.6 3.8 64 41-104 375-439 (478)
256 KOG1943 Beta-tubulin folding c 70.6 43 0.00093 37.3 11.0 142 34-181 556-708 (1133)
257 COG5240 SEC21 Vesicle coat com 70.3 27 0.00059 36.6 9.0 87 111-204 268-354 (898)
258 KOG1243 Protein kinase [Genera 70.3 81 0.0018 33.6 12.6 135 34-180 266-400 (690)
259 KOG3665 ZYG-1-like serine/thre 70.0 33 0.00071 36.7 10.1 162 10-172 501-691 (699)
260 PF12830 Nipped-B_C: Sister ch 69.7 36 0.00079 29.9 8.9 71 109-184 10-80 (187)
261 PF14500 MMS19_N: Dos2-interac 69.6 31 0.00068 32.3 8.8 68 111-181 3-72 (262)
262 KOG2933 Uncharacterized conser 69.0 43 0.00093 32.4 9.6 111 66-183 90-204 (334)
263 PF04388 Hamartin: Hamartin pr 68.9 14 0.00029 39.4 6.9 81 35-116 81-161 (668)
264 PF01603 B56: Protein phosphat 68.4 65 0.0014 32.0 11.3 94 3-97 112-207 (409)
265 smart00638 LPD_N Lipoprotein N 68.2 36 0.00077 35.0 9.8 128 27-174 398-541 (574)
266 KOG2676 Uncharacterized conser 67.1 5 0.00011 39.4 2.9 64 85-148 376-441 (478)
267 KOG1243 Protein kinase [Genera 66.8 12 0.00027 39.4 6.0 151 19-176 327-513 (690)
268 KOG2137 Protein kinase [Signal 65.5 62 0.0013 34.5 10.7 163 2-177 294-457 (700)
269 COG5116 RPN2 26S proteasome re 65.3 31 0.00066 36.2 8.2 98 23-136 552-650 (926)
270 KOG0915 Uncharacterized conser 64.6 55 0.0012 37.9 10.6 131 38-176 973-1111(1702)
271 KOG1949 Uncharacterized conser 64.3 2.2E+02 0.0047 30.9 14.6 106 23-135 221-330 (1005)
272 PF13001 Ecm29: Proteasome sta 63.9 29 0.00064 35.4 8.0 114 24-139 321-446 (501)
273 KOG0211 Protein phosphatase 2A 63.2 64 0.0014 35.0 10.6 134 34-177 530-663 (759)
274 PF12031 DUF3518: Domain of un 63.1 22 0.00047 33.2 6.2 75 2-76 145-228 (257)
275 COG5656 SXM1 Importin, protein 62.5 66 0.0014 34.8 10.2 68 26-97 464-531 (970)
276 PF14726 RTTN_N: Rotatin, an a 62.1 56 0.0012 26.1 7.7 92 80-173 2-95 (98)
277 KOG1078 Vesicle coat complex C 62.1 71 0.0015 34.6 10.4 74 109-187 247-320 (865)
278 PF11707 Npa1: Ribosome 60S bi 62.0 1.5E+02 0.0033 28.4 13.7 160 43-224 7-182 (330)
279 KOG2153 Protein involved in th 61.7 46 0.001 35.1 8.9 124 106-232 323-462 (704)
280 PF07814 WAPL: Wings apart-lik 59.7 67 0.0014 31.4 9.4 92 25-117 24-116 (361)
281 PF12530 DUF3730: Protein of u 59.7 1.4E+02 0.003 27.2 15.4 97 30-137 46-152 (234)
282 PF10274 ParcG: Parkin co-regu 59.6 64 0.0014 28.7 8.4 73 107-181 38-112 (183)
283 PF04499 SAPS: SIT4 phosphatas 59.3 64 0.0014 32.9 9.4 43 54-96 52-94 (475)
284 PF04499 SAPS: SIT4 phosphatas 57.6 35 0.00077 34.8 7.3 75 93-181 16-95 (475)
285 KOG0301 Phospholipase A2-activ 57.5 1.3E+02 0.0027 32.2 11.1 150 2-159 565-726 (745)
286 KOG1525 Sister chromatid cohes 57.5 22 0.00048 40.5 6.2 148 21-179 258-406 (1266)
287 COG5656 SXM1 Importin, protein 57.3 1.7E+02 0.0036 31.9 12.1 145 21-172 407-565 (970)
288 KOG1087 Cytosolic sorting prot 56.7 29 0.00063 35.4 6.4 68 108-175 39-109 (470)
289 KOG0413 Uncharacterized conser 56.6 39 0.00085 37.5 7.5 108 65-177 577-684 (1529)
290 PF04388 Hamartin: Hamartin pr 56.2 71 0.0015 34.1 9.5 60 78-137 81-141 (668)
291 PF07814 WAPL: Wings apart-lik 55.9 84 0.0018 30.7 9.4 93 66-159 23-116 (361)
292 KOG1832 HIV-1 Vpr-binding prot 55.6 1.1E+02 0.0025 33.9 10.6 86 2-92 333-422 (1516)
293 PF06685 DUF1186: Protein of u 54.1 1.7E+02 0.0038 27.2 10.7 90 61-157 70-161 (249)
294 KOG0567 HEAT repeat-containing 53.1 88 0.0019 29.7 8.5 98 19-138 181-282 (289)
295 PF06012 DUF908: Domain of Unk 52.6 66 0.0014 31.0 7.9 71 86-156 240-323 (329)
296 KOG1566 Conserved protein Mo25 52.5 2.3E+02 0.005 27.6 15.2 164 14-183 71-246 (342)
297 KOG2199 Signal transducing ada 52.3 33 0.00072 34.2 5.8 62 23-84 46-108 (462)
298 PF14663 RasGEF_N_2: Rapamycin 51.8 29 0.00062 28.3 4.6 40 23-63 9-48 (115)
299 PF09758 FPL: Uncharacterised 51.1 58 0.0012 28.1 6.5 129 49-177 11-148 (149)
300 PF13001 Ecm29: Proteasome sta 50.8 56 0.0012 33.4 7.5 80 16-99 364-448 (501)
301 KOG0211 Protein phosphatase 2A 50.6 1.3E+02 0.0028 32.7 10.3 108 25-136 440-547 (759)
302 cd03562 CID CID (CTD-Interacti 50.0 81 0.0017 25.0 7.0 88 34-132 17-104 (114)
303 PF09324 DUF1981: Domain of un 49.6 26 0.00057 27.0 3.8 60 64-128 17-80 (86)
304 PF12074 DUF3554: Domain of un 48.8 2.5E+02 0.0053 26.8 11.5 35 149-183 204-240 (339)
305 PF01347 Vitellogenin_N: Lipop 48.4 2E+02 0.0043 29.7 11.3 106 34-168 502-612 (618)
306 PF08324 PUL: PUL domain; Int 48.2 62 0.0013 29.7 6.8 147 2-151 84-246 (268)
307 PF11894 DUF3414: Protein of u 48.0 43 0.00093 39.5 6.9 59 35-93 577-638 (1691)
308 KOG2038 CAATT-binding transcri 47.9 62 0.0013 35.1 7.2 101 66-177 306-408 (988)
309 PLN03205 ATR interacting prote 47.8 1.6E+02 0.0034 29.8 9.6 159 24-183 325-521 (652)
310 KOG1993 Nuclear transport rece 47.6 57 0.0012 35.4 7.0 140 35-178 500-644 (978)
311 KOG2073 SAP family cell cycle 45.2 54 0.0012 35.8 6.6 62 55-116 181-248 (838)
312 PF11935 DUF3453: Domain of un 44.5 1.3E+02 0.0028 27.6 8.2 86 18-103 38-154 (239)
313 PF04821 TIMELESS: Timeless pr 44.0 1.5E+02 0.0032 27.7 8.7 83 100-182 102-212 (266)
314 PLN03076 ARF guanine nucleotid 43.9 1.8E+02 0.004 34.7 10.9 143 22-176 1133-1297(1780)
315 cd08050 TAF6 TATA Binding Prot 43.7 3E+02 0.0066 26.6 11.1 64 120-184 230-303 (343)
316 KOG1949 Uncharacterized conser 43.7 3.2E+02 0.007 29.7 11.6 146 27-181 179-334 (1005)
317 PF07571 DUF1546: Protein of u 43.6 98 0.0021 24.1 6.3 54 34-92 18-76 (92)
318 PF08767 CRM1_C: CRM1 C termin 42.9 2.5E+02 0.0055 26.8 10.3 138 37-180 42-196 (319)
319 PF10350 DUF2428: Putative dea 41.3 1.8E+02 0.0039 26.9 8.7 35 148-182 165-203 (255)
320 PF08216 CTNNBL: Catenin-beta- 40.7 22 0.00048 29.0 2.2 39 85-124 66-104 (108)
321 PF06685 DUF1186: Protein of u 40.1 1.1E+02 0.0025 28.5 7.1 49 22-72 111-161 (249)
322 KOG1924 RhoA GTPase effector D 39.9 4E+02 0.0088 29.3 11.7 101 80-180 207-319 (1102)
323 PF08216 CTNNBL: Catenin-beta- 37.9 27 0.00058 28.5 2.3 37 5-41 70-106 (108)
324 PLN03205 ATR interacting prote 37.2 1.3E+02 0.0029 30.3 7.3 125 34-159 384-545 (652)
325 PF12397 U3snoRNP10: U3 small 36.2 1.9E+02 0.0042 23.1 7.3 69 108-180 7-76 (121)
326 KOG1924 RhoA GTPase effector D 36.0 6.3E+02 0.014 27.9 12.6 121 36-159 206-346 (1102)
327 PF12783 Sec7_N: Guanine nucle 35.9 1.7E+02 0.0038 24.8 7.3 86 18-106 69-158 (168)
328 smart00567 EZ_HEAT E-Z type HE 35.7 58 0.0013 19.3 3.1 14 37-50 2-15 (30)
329 KOG4464 Signaling protein RIC- 35.7 1.7E+02 0.0037 29.7 7.8 82 35-118 110-198 (532)
330 PF14631 FancD2: Fanconi anaem 35.1 1.4E+02 0.0031 34.8 8.2 104 113-234 441-544 (1426)
331 PF10257 RAI16-like: Retinoic 35.1 4.3E+02 0.0094 25.7 11.7 132 20-155 7-178 (353)
332 PF03378 CAS_CSE1: CAS/CSE pro 34.1 2.7E+02 0.0058 28.1 9.2 124 35-160 43-185 (435)
333 PRK14707 hypothetical protein; 34.1 3.7E+02 0.0079 33.0 11.0 148 24-173 333-482 (2710)
334 KOG2374 Uncharacterized conser 33.6 5.7E+02 0.012 26.6 14.9 49 192-254 167-215 (661)
335 KOG1788 Uncharacterized conser 32.7 1.1E+02 0.0024 34.7 6.5 77 100-176 901-980 (2799)
336 PF08623 TIP120: TATA-binding 32.6 3.4E+02 0.0074 23.8 10.5 98 121-231 41-138 (169)
337 PRK14707 hypothetical protein; 32.6 3.8E+02 0.0082 32.9 10.8 139 23-164 374-515 (2710)
338 PF10274 ParcG: Parkin co-regu 32.0 3.7E+02 0.008 23.9 10.0 77 24-103 40-118 (183)
339 KOG1086 Cytosolic sorting prot 30.7 6E+02 0.013 26.0 14.5 61 31-91 54-120 (594)
340 KOG4464 Signaling protein RIC- 30.1 6.1E+02 0.013 25.9 14.2 159 23-184 46-237 (532)
341 PF08389 Xpo1: Exportin 1-like 29.9 1.5E+02 0.0032 23.8 5.7 61 109-173 84-148 (148)
342 PF12031 DUF3518: Domain of un 28.3 1.2E+02 0.0027 28.3 5.2 83 37-120 139-229 (257)
343 PF09324 DUF1981: Domain of un 28.3 2.5E+02 0.0055 21.4 6.3 61 23-88 18-82 (86)
344 PF12463 DUF3689: Protein of u 28.2 4.3E+02 0.0094 25.4 9.1 81 62-142 93-179 (303)
345 KOG1822 Uncharacterized conser 28.1 8.9E+02 0.019 29.4 12.7 145 80-231 424-576 (2067)
346 PF12783 Sec7_N: Guanine nucle 27.7 3.7E+02 0.0081 22.7 9.5 101 36-138 36-148 (168)
347 PF11864 DUF3384: Domain of un 27.7 6.4E+02 0.014 25.4 17.1 169 3-181 12-209 (464)
348 KOG1078 Vesicle coat complex C 27.7 6.6E+02 0.014 27.5 11.0 64 29-98 252-315 (865)
349 KOG4524 Uncharacterized conser 27.4 3.1E+02 0.0067 30.6 8.7 93 109-203 805-902 (1014)
350 PF10257 RAI16-like: Retinoic 27.3 5.8E+02 0.013 24.7 14.1 173 56-233 1-235 (353)
351 PHA01365 hypothetical protein 27.3 82 0.0018 24.3 3.2 30 217-252 4-33 (91)
352 PF01417 ENTH: ENTH domain; I 26.8 2.1E+02 0.0046 23.1 6.0 57 79-141 17-76 (125)
353 KOG2073 SAP family cell cycle 26.0 3.1E+02 0.0068 30.2 8.5 76 16-91 184-267 (838)
354 PF01465 GRIP: GRIP domain; I 25.5 1.9E+02 0.0041 19.6 4.5 33 26-58 11-43 (46)
355 PF01603 B56: Protein phosphat 25.4 6.7E+02 0.015 24.8 12.1 138 39-187 235-379 (409)
356 PF11894 DUF3414: Protein of u 25.1 1.1E+03 0.024 28.1 13.4 135 43-177 453-638 (1691)
357 smart00638 LPD_N Lipoprotein N 24.5 1.9E+02 0.004 29.8 6.4 58 24-89 479-540 (574)
358 PF07539 DRIM: Down-regulated 24.4 2.4E+02 0.0052 23.8 6.0 34 144-177 12-45 (141)
359 PF04510 DUF577: Family of unk 24.3 5E+02 0.011 23.0 12.1 88 25-119 6-96 (174)
360 PF13925 Katanin_con80: con80 23.7 4.7E+02 0.01 22.4 8.2 74 62-137 26-99 (164)
361 PF07923 N1221: N1221-like pro 23.7 1.5E+02 0.0032 28.0 5.1 54 64-118 60-127 (293)
362 PHA02447 hypothetical protein 23.5 37 0.0008 25.3 0.7 27 230-260 14-44 (86)
363 PF08767 CRM1_C: CRM1 C termin 23.3 4.2E+02 0.0092 25.3 8.2 177 2-180 48-249 (319)
364 KOG0301 Phospholipase A2-activ 22.5 9.9E+02 0.022 25.8 13.3 143 30-181 552-707 (745)
365 PF12765 Cohesin_HEAT: HEAT re 22.4 93 0.002 20.6 2.5 27 147-173 16-42 (42)
366 PF08064 UME: UME (NUC010) dom 22.2 2.9E+02 0.0063 21.9 5.8 57 76-137 26-84 (107)
367 PF12530 DUF3730: Protein of u 21.7 6E+02 0.013 22.9 15.4 140 24-180 2-153 (234)
368 smart00755 Grip golgin-97, Ran 21.5 2.4E+02 0.0053 19.2 4.4 34 26-60 10-43 (46)
369 KOG1788 Uncharacterized conser 21.5 1.9E+02 0.0042 33.0 5.8 73 105-177 464-537 (2799)
370 PF03130 HEAT_PBS: PBS lyase H 20.8 57 0.0012 19.3 1.1 14 38-51 1-14 (27)
371 COG4913 Uncharacterized protei 20.7 1.1E+03 0.025 25.8 14.9 99 149-271 822-921 (1104)
372 PF06580 His_kinase: Histidine 20.4 3.5E+02 0.0075 20.3 5.7 59 162-229 10-68 (82)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-42 Score=324.18 Aligned_cols=237 Identities=51% Similarity=0.653 Sum_probs=225.0
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
||+|++|||+||||++|++.|||++++.+|+++++.||+.|+|+||+++||||++|+.|++.|++++|+.+|.++.+.++
T Consensus 104 ld~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~ 183 (342)
T KOG2160|consen 104 LDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTV 183 (342)
T ss_pred HHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~ 159 (315)
|+||+||||+++||+++++..|...+|+.+|+.+|++ .+.++|+||++++++|+..+....+++...|+...++.+..
T Consensus 184 r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~ 263 (342)
T KOG2160|consen 184 RTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLIS 263 (342)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhh
Confidence 9999999999999999999999999999999999999 67999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccc
Q 021251 160 SEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR 239 (315)
Q Consensus 160 s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~ 239 (315)
+.+.+++|+++.+++.+........ .| ..+...+++.|+++++.++ ++.++++|.++|+.+|.+||..|+.+|
T Consensus 264 ~l~~~~~e~~l~~~l~~l~~~~~~~-~~-~~~~~~l~e~l~~~~q~~~-----~~~~~~~e~~l~~~l~~~~~e~~~~~~ 336 (342)
T KOG2160|consen 264 SLDFEVNEAALTALLSLLSELSTRK-EL-FVSLLNLEELLKSLIQIIS-----DHAALEEERQLVNSLWEICGEVPSILR 336 (342)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhcc-hh-hhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999988776544 45 6778889999999999988 788999999999999999999999999
Q ss_pred ccceee
Q 021251 240 DKGLLV 245 (315)
Q Consensus 240 ~~~~~~ 245 (315)
+.+.++
T Consensus 337 ~~~~~~ 342 (342)
T KOG2160|consen 337 KLLGSL 342 (342)
T ss_pred HHhccC
Confidence 988653
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-25 Score=223.02 Aligned_cols=212 Identities=18% Similarity=0.229 Sum_probs=184.7
Q ss_pred CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251 13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L 92 (315)
+..+.+++.|++|.++.||.+++..|+++|+|+||+++...|.+++.++++|++++|+.++..+......+.++|+|||+
T Consensus 143 e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 143 EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL 222 (514)
T ss_pred hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999998765568999999999999
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG 172 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a 172 (315)
|||..+....-.-...+++|..++++.|..+...|||+++||..+.++..+.+++.|++++|+.+|.+.+..++-.|+++
T Consensus 223 crgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 223 CRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred HcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 99985443323345799999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHHcCCcchh---hhhhhhhHHHHHHHHH-HHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccc
Q 021251 173 LLELAREKADGS---AIKLAEDNEKLKQLLG-ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR 239 (315)
Q Consensus 173 L~~L~~~~~~~~---~~c~~~~~~~L~~~L~-~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~ 239 (315)
+++++++++..+ ..| +....|..++. +..+.|+ .|.||.|.+++.|++.|.+
T Consensus 303 iGNIvtG~d~QTq~vi~~--~~L~~l~~ll~~s~~~~ik-------------kEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 303 IGNIVTGSDEQTQVVINS--GALPVLSNLLSSSPKESIK-------------KEACWTISNITAGNQEQIQ 358 (514)
T ss_pred ccceeeccHHHHHHHHhc--ChHHHHHHHhccCcchhHH-------------HHHHHHHHHhhcCCHHHHH
Confidence 999999998554 333 45666666666 3333344 6789999999999997765
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=6.3e-25 Score=206.44 Aligned_cols=207 Identities=18% Similarity=0.250 Sum_probs=182.5
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC-CHHHHHHHHHHhhhhhcCC
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~ 96 (315)
++..|++|.++.+|.+++.+||.+|.|++|+++.+.+-++++|+++|++.+|+.+|.++. +....++|.|.||||||+.
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 456899999999999999999999999999999999999999999999999999988653 4688999999999999997
Q ss_pred chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
.+....-.-...+++|..++.+.|+.+...|||+|+||.....+..+.+.+.|..++|+++|.+++..++..|++.++++
T Consensus 233 nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI 312 (526)
T COG5064 233 NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312 (526)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence 55433323346899999999999999999999999999987777778999999999999999999999999999999999
Q ss_pred HcCCcch---hhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccc
Q 021251 177 AREKADG---SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR 239 (315)
Q Consensus 177 ~~~~~~~---~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~ 239 (315)
+++++.. +..| +.+..|+.+|.+..+.|. +|.||+|.++..|+-.|..
T Consensus 313 VTG~D~QTqviI~~--G~L~a~~~lLs~~ke~ir-------------KEaCWTiSNITAGnteqiq 363 (526)
T COG5064 313 VTGSDDQTQVIINC--GALKAFRSLLSSPKENIR-------------KEACWTISNITAGNTEQIQ 363 (526)
T ss_pred eecCccceehheec--ccHHHHHHHhcChhhhhh-------------hhhheeecccccCCHHHHH
Confidence 9999844 3555 778888888888877776 7789999999999866543
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.75 E-value=5e-17 Score=181.52 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=163.6
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
+-|..++.|+.++..|...|++++|+.+|...+.++|..|+|+|.+++.++...++.+.+.|+++.|+++|.++ +..++
T Consensus 385 eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ 463 (2102)
T PLN03200 385 EALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQ 463 (2102)
T ss_pred HHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999999999999999985 78999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
..|+|+|++++.+++.....++++||++.|+++|.+++.++|..|+|+|.+|+.+.+..+..+.+.|+++.|+++|++++
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd 543 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG 543 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999998888888999999999999999999999999999999999865555666768899999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCc
Q 021251 163 PDVREAALRGLLELAREKA 181 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~ 181 (315)
...++.|+.+|.+|+.+..
T Consensus 544 ~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999986554
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.69 E-value=1.5e-15 Score=169.82 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=153.6
Q ss_pred HHHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|.+++.+ .++...+.+.||++.|+++|.+++..+|..|+|+|++++..|+..+..+++.|++|+|+++|.+ ++..++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-~~~~iq 505 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-GSQKAK 505 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHH
Confidence 45566744 5677888999999999999999999999999999999999999999999999999999999986 578999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---------------------
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD--------------------- 141 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~--------------------- 141 (315)
..|+|||+|++.+.+..+..+..+|+++.|+++|.+.+.+.|..|+|+|.+|+...+..
T Consensus 506 eeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL 585 (2102)
T PLN03200 506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVL 585 (2102)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHH
Confidence 99999999999976666656668899999999999999999999999999997432211
Q ss_pred ----------------hHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 142 ----------------CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 142 ----------------~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
.......|.++.|+.|+++++..+++.|..+|.+++.+++.
T Consensus 586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 00112458999999999999999999999999999998764
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.6e-15 Score=151.12 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=155.4
Q ss_pred HHHhhcCCCChhHHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 5 LQEHVESIDMANDLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 5 L~dLveniDnA~d~~~-~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
|..||...+-+-.|.. ...+|.|..+|.+.+++|...|||+|+.++.+-++.-+.+++.|+++.|+.+|.+. +..+++
T Consensus 219 LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~ 297 (514)
T KOG0166|consen 219 LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVT 297 (514)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-Cccccc
Confidence 4566666654444444 34678888999999999999999999999977666668899999999999999985 668899
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
-|+.||+|++.|+..-.+.++..|+++.|..+|. ++..+++..|||+|++++.+++...+.+++.|+++.|++++.+.+
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc
Confidence 9999999999999988888899999999999999 556779999999999999999989999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCc
Q 021251 163 PDVREAALRGLLELAREKA 181 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~ 181 (315)
.++|..|+.|+++++.++.
T Consensus 378 f~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred hHHHHHHHHHHHhhcccCC
Confidence 9999999999999987765
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.2e-14 Score=135.52 Aligned_cols=227 Identities=18% Similarity=0.184 Sum_probs=181.8
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCH
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDV 79 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~ 79 (315)
++.|..+.+.-+|-+.++..||+|.|+.+|.+.+.++|.+++.+|++++-. ...++.+.+.+ .++.|+.++++ .++
T Consensus 188 tgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~-~s~ 265 (550)
T KOG4224|consen 188 TGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDD-GSD 265 (550)
T ss_pred HHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhC-CCh
Confidence 456778888889999999999999999999999999999999999999974 56788888888 99999999875 678
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~ 159 (315)
.++-.|..||.++... ..-+..++++|++|.++++|+++.-++....++.|+++.- .|-+...+++.||++.||.+|+
T Consensus 266 kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~ 343 (550)
T KOG4224|consen 266 KVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLR 343 (550)
T ss_pred HHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHh
Confidence 9999999999999865 4456788899999999999999999999999999999986 4667778899999999999999
Q ss_pred CCC-hHHHHHHHHHHHHHHcCCcchhhhhhh--hhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251 160 SED-PDVREAALRGLLELAREKADGSAIKLA--EDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236 (315)
Q Consensus 160 s~d-~~v~e~aL~aL~~L~~~~~~~~~~c~~--~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~ 236 (315)
-.+ .++|-||..+|++|+..+...+... + ++-..|++++. + .--++|+|+.-|-..+..-=..+.
T Consensus 344 ~~dnEeiqchAvstLrnLAasse~n~~~i-~esgAi~kl~eL~l----D-------~pvsvqseisac~a~Lal~d~~k~ 411 (550)
T KOG4224|consen 344 AGDNEEIQCHAVSTLRNLAASSEHNVSVI-RESGAIPKLIELLL----D-------GPVSVQSEISACIAQLALNDNDKE 411 (550)
T ss_pred cCCchhhhhhHHHHHHHHhhhhhhhhHHH-hhcCchHHHHHHHh----c-------CChhHHHHHHHHHHHHHhccccHH
Confidence 865 4599999999999998665443222 2 22233333332 2 113488888888665554444555
Q ss_pred ccccccee
Q 021251 237 SLRDKGLL 244 (315)
Q Consensus 237 ~~~~~~~~ 244 (315)
.|.+-|++
T Consensus 412 ~lld~gi~ 419 (550)
T KOG4224|consen 412 ALLDSGII 419 (550)
T ss_pred HHhhcCCc
Confidence 66667764
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.59 E-value=4.4e-14 Score=113.10 Aligned_cols=118 Identities=26% Similarity=0.303 Sum_probs=111.2
Q ss_pred HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
.+++.|+++.++.+|.+++..+|..|+++|++++.++|.....+++.|+++.|+.++.+ .+..++..|+|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 47889999999999999999999999999999999989999999999999999999986 58999999999999999998
Q ss_pred chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251 97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 135 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll 135 (315)
+.....+.+.|+++.|+++|+..+.+++..++++|.+|+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 887788888999999999999999999999999999986
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2e-14 Score=136.91 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=164.8
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
+|-.+.-|+.|..-+++++|+.+|+....+++.++|..|..||.+++.- ...+..+...|++.+|.++ .+.++..+|.
T Consensus 108 alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrL-akskdirvqr 185 (550)
T KOG4224|consen 108 ALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRL-AKSKDIRVQR 185 (550)
T ss_pred hhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhh-cccchhhHHH
Confidence 4555677888999999999999999999999999999999999999886 4577889999999999996 5567999999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC--chHHHHHhhCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG--FPRLMLHLASSE 161 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g--~v~~Lv~LL~s~ 161 (315)
.|+.||++|+. .....+.++..||+++|+.++++.+..+|..++.+|+++.- +.-.++++.+.+ +|+.|+.|++++
T Consensus 186 natgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 186 NATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred HHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCC
Confidence 99999999974 45567788899999999999999999999999999999985 356678888887 999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHH
Q 021251 162 DPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERI 203 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~ 203 (315)
+..++-.|-.+|.+|+.+.......--.+....+.++|+..+
T Consensus 264 s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~ 305 (550)
T KOG4224|consen 264 SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM 305 (550)
T ss_pred ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc
Confidence 999999999999999988763321110234555666664433
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.50 E-value=5.2e-13 Score=106.84 Aligned_cols=119 Identities=29% Similarity=0.313 Sum_probs=110.4
Q ss_pred HHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251 59 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 59 ~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~ 138 (315)
.+++.|+++.|+.++.+ .+..++..|+++|++++.+.+.....+++.|+++.++.+|.+++.+++..|+++|++|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 46789999999999986 47899999999999999998888889999999999999999999999999999999999877
Q ss_pred CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 139 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 139 ~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
+.....+.+.|+++.+++++..++..+++.++.+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7777888999999999999999999999999999999863
No 11
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.46 E-value=1.6e-13 Score=129.83 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=146.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.+|.|-+++.+.++++-..|+|+|+.++..--++-+.++..|..+.|+.+|.+ ++..++.-|+.+++|++.++....+.
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-ESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-ccccccCHHHHhhcCeeecCccceeh
Confidence 67888899999999999999999999998755666889999999999999987 57899999999999999999887788
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
++..|.++.+..+|+++...+|..|||.|+++..++.+..+.+++++++|.|+++|.+-+..++..|..|+++...++.
T Consensus 323 iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 323 IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 8899999999999999999999999999999999988889999999999999999999999999999999999887765
No 12
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.7e-10 Score=105.66 Aligned_cols=175 Identities=19% Similarity=0.229 Sum_probs=148.2
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
|...+.++..+..-++..+ ++....-..+.+.+=|..|..-|-..+-+-. ....++..||+.+|+..+.+ ++.++|
T Consensus 66 e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~-~~~~lR 141 (342)
T KOG2160|consen 66 EDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLEN-SDAELR 141 (342)
T ss_pred hhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcC-CcHHHH
Confidence 4567788888888888887 2222222234677888899999999997543 45779999999999998876 589999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS- 160 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s- 160 (315)
..|+|.|+..++|++..+..+.+.||++.|+.+|.+++ ..++.||++++++|+.+++.....+...+....|...+.+
T Consensus 142 ~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~ 221 (342)
T KOG2160|consen 142 ELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN 221 (342)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999998754 7899999999999999999888888888889999999999
Q ss_pred -CChHHHHHHHHHHHHHHcCCc
Q 021251 161 -EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 161 -~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.+..++.+|+..+..|....+
T Consensus 222 ~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 222 NTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred CcchHHHHHHHHHHHHHHHhhh
Confidence 567788999999998887665
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.11 E-value=1.4e-09 Score=101.09 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=126.2
Q ss_pred HHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 19 HSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 19 ~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
...+.+..|+.+|++ .++.++..|..++++.+. .|..|+.+.+.|+++.+..++.+ +++.+|++|++||.|+..+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh
Confidence 445668999999985 789999999999999876 68999999999999999999876 689999999999999987644
Q ss_pred hhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 98 PGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
. +..+ +...-.++-..+..+ +..+|..++.+|.+|... +..+..+. +.++.++.+|.+++..++.+++.+|.+|
T Consensus 87 n-~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 N-QEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred h-HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 3333 433444444445443 689999999999999754 33344443 4799999999999999999999999999
Q ss_pred HcCCc
Q 021251 177 AREKA 181 (315)
Q Consensus 177 ~~~~~ 181 (315)
+....
T Consensus 162 S~np~ 166 (254)
T PF04826_consen 162 SENPD 166 (254)
T ss_pred ccCHH
Confidence 88764
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.05 E-value=6.7e-09 Score=105.31 Aligned_cols=157 Identities=22% Similarity=0.239 Sum_probs=141.2
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
-+..+.|...|.++++.||..|++.|+.++.++....+.+.+.+.++.++.++.. ++..|...|+-+|++++++. ...
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~-~~~ 153 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-PDLSVAKAAIKALKKLASHP-EGL 153 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCc-hhH
Confidence 3345677789999999999999999999999988888888899999999999975 68999999999999999864 455
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+.++..+++..|..++...+..+|.|+..++..++...++....+.+.|+++.++..+.++|.-+|..|+.+|..|+..
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 6677888899999999988888999999999999988888888999999999999999999999999999999999983
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.03 E-value=8e-09 Score=107.86 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=155.5
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
.|..+.+|..+-..+++.|++++|+++|++++.++...+..+|..++-. .+++..+.+.|++++|++++.++ +..++.
T Consensus 272 lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~-~~~l~~ 349 (708)
T PF05804_consen 272 LLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE-NEDLVN 349 (708)
T ss_pred HHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC-CHHHHH
Confidence 4788999999999999999999999999999999999999999999975 55789999999999999999874 778999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-ED 162 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d 162 (315)
.++.+|.||.-+ +.....++..|.+|.|+.+|.+++ .+..++.+|.+|+. ++..+..+...+.++.++.++-+ ++
T Consensus 350 ~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 350 VALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 999999999865 455788999999999999998654 55668888888886 45678888888999999997655 55
Q ss_pred hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHH
Q 021251 163 PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERI 203 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~ 203 (315)
..+...++.++.+|+.+......-| + ..+|..+++..+
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~-~--g~gL~~L~~ra~ 463 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMC-E--GNGLQSLMKRAL 463 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHH-h--cCcHHHHHHHHH
Confidence 5566666777778887776554445 3 234455554443
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.5e-08 Score=94.82 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=129.5
Q ss_pred hHHHHcCChHHHHHhhcC-CCHHHH---HHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc-cCCCCHHHHHHHHHHhh
Q 021251 16 NDLHSIGGLAPLLGYLKN-SHANIR---AKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF-ASDPDVTVRTKALGAIS 90 (315)
Q Consensus 16 ~d~~~~Ggl~~Ll~lL~s-~~~~vR---~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL-~sd~~~~vr~kAl~ALS 90 (315)
..+.+.||+..+++++.+ .+...| ..+++.+..++.+ ..++..+++.||+++++.++ .+.+++.|...++-+||
T Consensus 277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~ 355 (461)
T KOG4199|consen 277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIIS 355 (461)
T ss_pred HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456679999999999976 444455 6677777888875 45789999999999999985 44568899999999999
Q ss_pred hhhcCCchhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHH
Q 021251 91 SLIRHNKPGIEAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREA 168 (315)
Q Consensus 91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~--~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~ 168 (315)
-||--.+.....|++.||-...++.|+... ..+|+.|||+|++++......+..+...| ++.|+..-++.+..+...
T Consensus 356 ~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~ 434 (461)
T KOG4199|consen 356 ILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAA 434 (461)
T ss_pred HHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHH
Confidence 988878888889999999999999998754 78999999999999988777888887765 677888878888877776
Q ss_pred HHHHHHHH
Q 021251 169 ALRGLLEL 176 (315)
Q Consensus 169 aL~aL~~L 176 (315)
+-.+|..|
T Consensus 435 akaALRDL 442 (461)
T KOG4199|consen 435 AKAALRDL 442 (461)
T ss_pred HHHHHHhc
Confidence 66666443
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.9e-07 Score=88.91 Aligned_cols=169 Identities=13% Similarity=0.148 Sum_probs=143.8
Q ss_pred CChhHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH---HHHHHH
Q 021251 13 DMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR---TKALGA 88 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr---~kAl~A 88 (315)
..|+.|.+.||+..|+..|+- -++++-..++..|++++-+++.|| .+.+.||+..|++++++..+...| ..++..
T Consensus 232 ~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~-~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lsl 310 (461)
T KOG4199|consen 232 GHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICK-SIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSL 310 (461)
T ss_pred HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 468999999999999999976 579999999999999999988874 589999999999999875555555 456666
Q ss_pred hhhhhcCCchhHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChH
Q 021251 89 ISSLIRHNKPGIEAFRLANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPD 164 (315)
Q Consensus 89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~ 164 (315)
|+.|+ +++.....+++.||.+.++.++. ++++.+-..++.+++-|+-..|+....+++.|.-...++-++. ....
T Consensus 311 LralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~ 389 (461)
T KOG4199|consen 311 LRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQ 389 (461)
T ss_pred HHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHH
Confidence 66666 55677788999999999999874 5789999999999999999889999999999998888888876 4567
Q ss_pred HHHHHHHHHHHHHcCCcch
Q 021251 165 VREAALRGLLELAREKADG 183 (315)
Q Consensus 165 v~e~aL~aL~~L~~~~~~~ 183 (315)
+|..+.+++.+++.++..+
T Consensus 390 vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 390 VQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 9999999999999887644
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=5.3e-07 Score=91.55 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=145.6
Q ss_pred HHHHhhcCCCC-hhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLveniDn-A~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++++.+. +..+.+.+.++.++.+|.+++..|...|+.+|..++.+.+.. +.++..+++..|..++.+ .+..+|
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~-~~~~vR 177 (503)
T PF10508_consen 100 QLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQ-SSDIVR 177 (503)
T ss_pred HHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhc-cCHHHH
Confidence 35555555554 344556888889999999999999999999999999876554 568888899999999876 367899
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.+++..+..++++++.........|-++.++..|.++|.-+|..++.+|..|+. .+...+.+.+.|+++.|+.++...+
T Consensus 178 ~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 178 CRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc
Confidence 999999999999999998888889999999999999999999999999999998 6788899999999999999997732
Q ss_pred hH------HHHHHHHHHHHHHcCCcchh
Q 021251 163 PD------VREAALRGLLELAREKADGS 184 (315)
Q Consensus 163 ~~------v~e~aL~aL~~L~~~~~~~~ 184 (315)
.+ +.-..+...++++...+..+
T Consensus 257 ~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 257 EDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred cCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 21 22233466677777654433
No 19
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.78 E-value=3.2e-07 Score=95.99 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=130.3
Q ss_pred HHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHH
Q 021251 5 LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK 84 (315)
Q Consensus 5 L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~k 84 (315)
|..|.-.-+|...+.+.|.++.|++++.+++.+++..|.++|.|++. ++..+..+++.|++|+|+.+|..+.. +.-
T Consensus 314 LkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~---~~v 389 (708)
T PF05804_consen 314 LKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNF---REV 389 (708)
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCch---HHH
Confidence 45555566789999999999999999999999999999999999998 47789999999999999999986433 334
Q ss_pred HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251 85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 163 (315)
Q Consensus 85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~ 163 (315)
++..|.+++.. +.+...|...++++.|+++|-+ ++.++...+++++.+|+.+ +...+.+++.|.++.|+...-....
T Consensus 390 al~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D 467 (708)
T PF05804_consen 390 ALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRD 467 (708)
T ss_pred HHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhccc
Confidence 45555555543 4456788888999999997654 6678888888888899864 5666788888888999887655333
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 021251 164 DVREAALRGLLELAREKA 181 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~ 181 (315)
.+. +..+-+++.+..
T Consensus 468 ~lL---lKlIRNiS~h~~ 482 (708)
T PF05804_consen 468 PLL---LKLIRNISQHDG 482 (708)
T ss_pred HHH---HHHHHHHHhcCc
Confidence 332 346667777763
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.77 E-value=2.9e-07 Score=85.62 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=130.1
Q ss_pred ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhh
Q 021251 14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSL 92 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~L 92 (315)
|-.-+.+.||++.+..+|.++++.+|.+|.+++.+++.+ .+.|..+-.+ ++.+++...+. -+..++..++.+|.+|
T Consensus 46 nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 46 NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence 344566899999999999999999999999999999885 4566765443 77777764443 4678999999999999
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC-ChHHHHHHHH
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE-DPDVREAALR 171 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~-d~~v~e~aL~ 171 (315)
+..+.. ...+ .+.++.++++|.+.+.++|..++.+|.+|.. ++...+.+...+++..++.|+... +.++...++.
T Consensus 123 tv~~~~-~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 123 TVTNDY-HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred CCCcch-hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 866433 3333 3589999999999999999999999999986 566667777778999999999985 7888899998
Q ss_pred HHHHHHcCCc
Q 021251 172 GLLELAREKA 181 (315)
Q Consensus 172 aL~~L~~~~~ 181 (315)
.+.+|..+-.
T Consensus 199 ~~~ni~~~~~ 208 (254)
T PF04826_consen 199 FFENINENIK 208 (254)
T ss_pred HHHHHHHhhC
Confidence 8888855543
No 21
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.73 E-value=2e-07 Score=94.73 Aligned_cols=170 Identities=17% Similarity=0.190 Sum_probs=130.7
Q ss_pred CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 12 IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 12 iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
|+++..|-..-....+.......+...++.|+-++-+++..-...+.-+-..++..+|++++ ++++..+...+++||+|
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICN 445 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHH
Confidence 56666665543333333344456777888888888777654333333333457889999998 56888999999999999
Q ss_pred hhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch-HHHHHhhCCCChHHHHHHH
Q 021251 92 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP-RLMLHLASSEDPDVREAAL 170 (315)
Q Consensus 92 LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v-~~Lv~LL~s~d~~v~e~aL 170 (315)
++-.+.+-+..|+..||+..+...+.+.+..++.++.|+|+++.-+.++.....-...+. ..++.+...++..|||.++
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF 525 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999997665554444344443 4456677789999999999
Q ss_pred HHHHHHHcCCcc
Q 021251 171 RGLLELAREKAD 182 (315)
Q Consensus 171 ~aL~~L~~~~~~ 182 (315)
..|.+++-++..
T Consensus 526 qllRNl~c~~~~ 537 (678)
T KOG1293|consen 526 QLLRNLTCNSRK 537 (678)
T ss_pred HHHHHhhcCcHH
Confidence 999999877543
No 22
>PRK09687 putative lyase; Provisional
Probab=98.54 E-value=1.9e-06 Score=81.29 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=93.7
Q ss_pred HHHHHhhcCCCC------hhHHHHcC---ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc
Q 021251 3 DELQEHVESIDM------ANDLHSIG---GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 73 (315)
Q Consensus 3 e~L~dLveniDn------A~d~~~~G---gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL 73 (315)
+.|.++.++-|. +..|...| .++.+..+++++++.+|+.|+++||.+-... ..+ ...++.|..++
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~-----~~a~~~L~~l~ 99 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQ-----DNVFNILNNLA 99 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cch-----HHHHHHHHHHH
Confidence 456666665553 44566666 4566678888999999999999999875321 111 12467777776
Q ss_pred cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 021251 74 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 153 (315)
Q Consensus 74 ~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~ 153 (315)
.+|++..||..|+.+|+.++........ ..+..+...+.+++..+|..|+++|..+- ....++.
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----------~~~ai~~ 163 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITAFDKSTNVRFAVAFALSVIN-----------DEAAIPL 163 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHhhCCCHHHHHHHHHHHhccC-----------CHHHHHH
Confidence 6778899999999999998654321111 12333555555666666666666664332 1124455
Q ss_pred HHHhhCCCChHHHHHHHHHHHHH
Q 021251 154 MLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 154 Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
|+.+|..++..+|..|+.+|+.+
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcC
Confidence 55555555555555555555555
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.46 E-value=4.3e-06 Score=79.71 Aligned_cols=177 Identities=19% Similarity=0.250 Sum_probs=127.1
Q ss_pred HHHHHhhcCC-CChhHHHHcC------ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251 3 DELQEHVESI-DMANDLHSIG------GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 75 (315)
Q Consensus 3 e~L~dLveni-DnA~d~~~~G------gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s 75 (315)
-.+.|++.+- ....-|.... -|.+++++|.+++.-++..|+.+++.+....+....... .+.++.+++.+.+
T Consensus 79 ~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~ 157 (312)
T PF03224_consen 79 TLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS 157 (312)
T ss_dssp HHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH
Confidence 3455666554 4555555522 589999999999999999999999998776554433322 4567888888775
Q ss_pred C---CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh------cC-CCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 76 D---PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL------GS-ESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 76 d---~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL------~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
. .+..++.-|+.+++.+.|. +.....|.+.+|++.|..+| .+ .+..++-.+++++--|.- ++.....+
T Consensus 158 ~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~ 235 (312)
T PF03224_consen 158 QLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEEL 235 (312)
T ss_dssp TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred hhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 3 2345678899999999986 66678899999999999999 22 347888888888877764 45666778
Q ss_pred HhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcc
Q 021251 146 DKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 146 ~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
.+.++|+.|+.+++. ....+..-++.+|.+|+.....
T Consensus 236 ~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 236 NKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred hccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 888899999999987 5567888888999999988774
No 24
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.8e-06 Score=90.15 Aligned_cols=167 Identities=20% Similarity=0.159 Sum_probs=147.1
Q ss_pred ChhHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHHHhh
Q 021251 14 MANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAIS 90 (315)
Q Consensus 14 nA~d~~-~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS 90 (315)
.|.++. ..|.+|.+++||+++-.++|--=+.+.+.|-.-.|.||..+++.+|-...++.|..+ -+++-|.-|+|-|+
T Consensus 503 WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 503 WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLA 582 (1387)
T ss_pred hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHH
Confidence 344433 489999999999999999999999999999888899999999999999999998762 34688999999999
Q ss_pred hhhcCCchhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251 91 SLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA 169 (315)
Q Consensus 91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a 169 (315)
.++++++-+|+...+.+-+.+....|.++ .+-++..+|-+|..|..+.+..+=.=.+.+..+.|+.+|..+-.+||..|
T Consensus 583 viv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAA 662 (1387)
T KOG1517|consen 583 VIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAA 662 (1387)
T ss_pred HHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHH
Confidence 99999999999999888889999999985 68999999999999998777665445566889999999999999999999
Q ss_pred HHHHHHHHcCC
Q 021251 170 LRGLLELAREK 180 (315)
Q Consensus 170 L~aL~~L~~~~ 180 (315)
+-||+.+....
T Consensus 663 VFALgtfl~~~ 673 (1387)
T KOG1517|consen 663 VFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHhccc
Confidence 99999998864
No 25
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.6e-06 Score=87.86 Aligned_cols=175 Identities=23% Similarity=0.223 Sum_probs=146.8
Q ss_pred hHHHHHhhcCCCChhHHHHcC-----ChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251 2 LDELQEHVESIDMANDLHSIG-----GLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 75 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~G-----gl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s 75 (315)
||.|.+|||++-+.|.-.-.| .+|.|+.+|++ .+.+|.-.||.+|.+++.--|.+-..+++++++|.|+.-|..
T Consensus 186 leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~ 265 (1051)
T KOG0168|consen 186 LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT 265 (1051)
T ss_pred HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence 678899999987776433221 34678899987 578999999999999999999999999999999999988776
Q ss_pred CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHH
Q 021251 76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLM 154 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~L 154 (315)
=....|...++.||--|.|.|+. +++++||+...+..|.=-...+|++|+...++.|..-+. ....+. ..+|.|
T Consensus 266 IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL 340 (1051)
T KOG0168|consen 266 IEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLL 340 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHH
Confidence 56889999999999999998874 678899999999998877899999999999999975433 334444 479999
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 155 LHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 155 v~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
-.+|...|....|.++-++..++....
T Consensus 341 ~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 341 TPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 999999999999999999988876554
No 26
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.31 E-value=5.5e-06 Score=85.99 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=130.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--hHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GIE 101 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--~~~ 101 (315)
++-.+.+|.+.++.++..|+.-|-.++-.+.+++..+-+.|+|++|+.+|.+. ...|++.|.+|+-||+-+... ..-
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccch
Confidence 56778999999999999999999999998899999999999999999999984 789999999999999988766 667
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--------------CChHHH
Q 021251 102 AFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--------------EDPDVR 166 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--------------~d~~v~ 166 (315)
.+...+|++.++++|.. .|..+++.+..+|-+|.+. +..+..++. ..+..|-..+-. .+.++-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 78899999999999986 7899999999999999865 333333332 223333322221 123344
Q ss_pred HHHHHHHHHHHcCCcch---hhhhhhhhHHHHHHHHHHHHh
Q 021251 167 EAALRGLLELAREKADG---SAIKLAEDNEKLKQLLGERIK 204 (315)
Q Consensus 167 e~aL~aL~~L~~~~~~~---~~~c~~~~~~~L~~~L~~~~~ 204 (315)
-.+..+|.++.+.+.+. .+.| .+|+..|-.-++
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c-----~GLIdaL~~~iq 427 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMREC-----DGLIDALLFSIQ 427 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhc-----cchHHHHHHHHH
Confidence 55667777777655533 3555 344455544444
No 27
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.24 E-value=8e-06 Score=84.79 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=104.0
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--chH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS--DCS 143 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~--~~~ 143 (315)
++..+.+|.+ .++.++..|.+-|--+|+++..+...+.+.||++.|+.+|.+....++..||++|.+|+..... ++-
T Consensus 235 lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 6777888886 5789999999999999999999999999999999999999999999999999999999976544 667
Q ss_pred HHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251 144 VVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 144 ~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.+.+.+.|+.++.+|+. .|.++++.+..+|++|.+.+.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~ 352 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA 352 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence 78899999999999997 899999999999999988743
No 28
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.20 E-value=2.5e-06 Score=56.89 Aligned_cols=41 Identities=34% Similarity=0.569 Sum_probs=37.5
Q ss_pred CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc
Q 021251 53 NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 53 Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR 94 (315)
||+.++.+++.|++++|+++|.+ .+..++..|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 57788999999999999999985 689999999999999975
No 29
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.12 E-value=4.4e-05 Score=71.02 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~ 114 (315)
...+...|..+|--++-.+|.+|..|....++..|+.+|....++.++..++.++.++...++.++..|.+.+|+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 44467889999999999999999999999999999999976667899999999999999999999999999999999999
Q ss_pred hhcCC--CHHHHHHHHHHHHHHhh
Q 021251 115 ALGSE--SVKFQRKALNLIQYLLN 136 (315)
Q Consensus 115 lL~s~--~~kl~~kA~~lLs~Ll~ 136 (315)
++++. +..++.|++..|.-.+.
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 99875 58999999877764443
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.10 E-value=9.6e-05 Score=72.78 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhc----CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEA----NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA 110 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~----G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~ 110 (315)
+..|+..+++|++.++. ||.-+..|.++ ++++.|.+...+ ++..|......||+|+|..+..++..|.+.||-.
T Consensus 55 ~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred cchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 56788999999999986 56666777666 566777777665 4789999999999999999999999999999999
Q ss_pred HHHHhhcC---C----CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChHHHHHHHHHHHHH
Q 021251 111 ALRDALGS---E----SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLLEL 176 (315)
Q Consensus 111 ~L~~lL~s---~----~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L 176 (315)
++++.|++ . ..++..-++.+|.+..-++...+..+.++|+++.|..++.- .+....|..+-..+++
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nl 207 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNL 207 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccH
Confidence 99999875 2 25888888999998877788889999999999999988765 5667777777554444
No 31
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.08 E-value=9.4e-05 Score=75.55 Aligned_cols=202 Identities=21% Similarity=0.252 Sum_probs=127.9
Q ss_pred hHHHHHhhcCCCChhHH-HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251 2 LDELQEHVESIDMANDL-HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80 (315)
Q Consensus 2 Le~L~dLveniDnA~d~-~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~ 80 (315)
.|.|+++.+-++.|.|. .....+..|+..-+ .+...+..|+..|......-|..++.. +..++.|.. |.+..
T Consensus 2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcE-Ded~~ 74 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKSQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCE-DEDVQ 74 (556)
T ss_dssp HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHH
T ss_pred HHHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHh-cccHH
Confidence 47888988888888877 22335566666655 578899999999999999999987764 566999976 56899
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS- 159 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~- 159 (315)
||+.|+-.|..+|++++.....+ ..+|+++|++++..-..-+-..|..|+..++. +.+..+...+.
T Consensus 75 iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~ 141 (556)
T PF05918_consen 75 IRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIES 141 (556)
T ss_dssp HHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH-
T ss_pred HHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHh
Confidence 99999999999999987655544 56899999999877666677777777765443 23333333333
Q ss_pred --CCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHH--HHhC
Q 021251 160 --SEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWN--ACYN 233 (315)
Q Consensus 160 --s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~--~~f~ 233 (315)
+++..+||+++..|..-+..-.... -.|..+..+.+...++++-. |.. .+|-+++=.|+. .+|+
T Consensus 142 ~~~~de~~Re~~lkFl~~kl~~l~~~~----~~p~~E~e~~i~~~ikkvL~----DVT--aeEF~l~m~lL~~lk~~~ 209 (556)
T PF05918_consen 142 SKSGDEQVRERALKFLREKLKPLKPEL----LTPQKEMEEFIVDEIKKVLQ----DVT--AEEFELFMSLLKSLKIYG 209 (556)
T ss_dssp --HS-HHHHHHHHHHHHHHGGGS-TTT----S---HHHHHHHHHHHHHHCT----T----HHHHHHHHHHHHTSGG--
T ss_pred cccCchHHHHHHHHHHHHHHhhCcHHH----hhchHHHHHHHHHHHHHHHH----hcc--HHHHHHHHHHHHhCcccc
Confidence 5788899999999976555443333 23445556666666665442 221 255555555544 4444
No 32
>PRK09687 putative lyase; Provisional
Probab=98.08 E-value=2.9e-05 Score=73.24 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=85.6
Q ss_pred ChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 23 GLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 23 gl~~Ll~l-L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
.++.|..+ ++.+++.||..|+.+||.+....+.-. ..++..|...+. |++..||..|++||+.+- +
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~-----~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~-~------ 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLYS-----PKIVEQSQITAF-DKSTNVRFAVAFALSVIN-D------ 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc-----hHHHHHHHHHhh-CCCHHHHHHHHHHHhccC-C------
Confidence 46667666 577899999999999999864322111 113444555544 357788888888887642 1
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
...++.|+.+|.+++..++..|+++|..+-...+ .+++.|+.+|...+..||..|+.+|+.+
T Consensus 158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 1266778888888888888888888877722111 3555677777777777777777777653
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.07 E-value=0.00022 Score=70.96 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=143.3
Q ss_pred HHHHhhcCC-CChhHHHHc-----CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC
Q 021251 4 ELQEHVESI-DMANDLHSI-----GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 4 ~L~dLveni-DnA~d~~~~-----Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
.+.|++..- .-+.-|++. .-+.+++++|++++.-|...|+.+++.+++-.+.........-.+.-|...+.+..
T Consensus 77 Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 156 (429)
T cd00256 77 LIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT 156 (429)
T ss_pred HHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC
Confidence 344455442 234566654 46889999999999999999999999988654432121111112334555555433
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML 155 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv 155 (315)
+...+.-|+.+++.|.|.. .....|.+.+|++.|+.+|+.. +..++-.+++++=-|.-+ +.....+.+.++|+.++
T Consensus 157 ~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~ 234 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLS 234 (429)
T ss_pred CcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHH
Confidence 4567777889999999974 4467888999999999999874 468888888877766543 33555666779999999
Q ss_pred HhhCC-CChHHHHHHHHHHHHHHcCCcchh--hhhhhhhHHHHHH-HHHHHHhhccCC--ChhhHHHHHHHHHHHHHHHH
Q 021251 156 HLASS-EDPDVREAALRGLLELAREKADGS--AIKLAEDNEKLKQ-LLGERIKGISLM--SPEDLGAAREERHLVDSLWN 229 (315)
Q Consensus 156 ~LL~s-~d~~v~e~aL~aL~~L~~~~~~~~--~~c~~~~~~~L~~-~L~~~~~~i~~~--~~ed~~~~~eE~~~~~~L~~ 229 (315)
.+++. ....+..-++.+|.++........ ..| ...+.. .+-.-++.++.. +.|| ..|.+++..+.+.
T Consensus 235 ~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~----~~~mv~~~l~~~l~~L~~rk~~Ded---L~edl~~L~e~L~ 307 (429)
T cd00256 235 DILKESTKEKVIRIVLAIFRNLISKRVDREVKKTA----ALQMVQCKVLKTLQSLEQRKYDDED---LTDDLKFLTEELK 307 (429)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhH----HHHHHHcChHHHHHHHhcCCCCcHH---HHHHHHHHHHHHH
Confidence 99987 445566777788888887542110 111 011111 111122222222 2333 6677777777777
Q ss_pred HHhCCCCcc
Q 021251 230 ACYNEPSSL 238 (315)
Q Consensus 230 ~~f~~~~~~ 238 (315)
..+.+-|+.
T Consensus 308 ~~~k~ltsf 316 (429)
T cd00256 308 NSVQDLSSF 316 (429)
T ss_pred HHHHHcCCH
Confidence 666665543
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.04 E-value=0.00023 Score=72.92 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=114.5
Q ss_pred hcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251 9 VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA 88 (315)
Q Consensus 9 veniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A 88 (315)
|.-+++. +-...+..+++++|..++..|+..+..+|.|++-.-...|..|+++||+..|++++. +.+.++|.+++|+
T Consensus 408 V~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~-~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 408 VSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLT-DPDFNSRANSLWV 484 (678)
T ss_pred HHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhc-CCCchHHHHHHHH
Confidence 3344444 566778999999998899999999999999999987777899999999999999976 4789999999999
Q ss_pred hhhhhcCCchhH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251 89 ISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL 148 (315)
Q Consensus 89 LS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~ 148 (315)
|-.+.-+.+.-. .++...=+-..|..+...++..+|.-+..++++|+.+..+..+.+.++
T Consensus 485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 999998886643 455565677888999999999999999999999998655555655544
No 35
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.03 E-value=4.9e-05 Score=68.49 Aligned_cols=155 Identities=20% Similarity=0.257 Sum_probs=102.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.+..++..+.+....|-..|+.+|+.++..-..--+.++ ...++.|++.+.+ +...++..|..+|-.++.+..... .
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~-~ 130 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP-K 130 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---H
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH-H
Confidence 345666777777888999999999999875322222222 2468999999876 567899999999999998866211 1
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh----cCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK----LGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~----~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
+ -+..+...+.+.++++|..++..+..++...+.....+.. ..+++.+..++...+.++|+.|-.++..+.+
T Consensus 131 ~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 131 I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 1466778889999999999999999998776622222222 2477888999999999999999999999987
Q ss_pred CCcchh
Q 021251 179 EKADGS 184 (315)
Q Consensus 179 ~~~~~~ 184 (315)
..+...
T Consensus 207 ~~~~~a 212 (228)
T PF12348_consen 207 HFPERA 212 (228)
T ss_dssp HH-HHH
T ss_pred HCCHhh
Confidence 776544
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.03 E-value=1.3e-05 Score=56.52 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251 36 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 36 ~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L 92 (315)
+.+|..|+|+||++++..+...+. .-..+++.|+.+|.+ ++..||.+|.|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 468999999999999988876665 334589999999975 4679999999999986
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.02 E-value=1.6e-05 Score=60.62 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=67.8
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 24 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 24 l~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
++.|++.| +++++.+|+.|+++||.+- .+ .+++.|+.++. +++..||..|++||+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLK-DEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhC---------
Confidence 57899988 8899999999999999542 22 24889999985 579999999999999871
Q ss_pred HHHcCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 021251 103 FRLANGYAALRDALGSES-VKFQRKALNLIQ 132 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs 132 (315)
....++.|.+++.+++ ..+|..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2347888999998754 666888877764
No 38
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00052 Score=74.09 Aligned_cols=151 Identities=23% Similarity=0.238 Sum_probs=115.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 106 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 106 (315)
+-.+|.|++..-|+.|..+|+.++...++.-...+. .+++..+..|. |+++-||-.|+.||+-+..+..+-.+.....
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 335778999999999999999999986554332211 35666666665 6899999999999999999998887777777
Q ss_pred CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchH-HHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 107 NGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKL--GFPR-LMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 107 gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~-~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
--.+.|+..+.+. +++++..|+.++-++....+. +++.-. +++. .+..|+.++...++|.++.+|...+..-.
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 7788899998885 589999999999999865432 333321 4444 44456677889999999999999976543
No 39
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.96 E-value=6.8e-06 Score=54.76 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=36.1
Q ss_pred CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ 51 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq 51 (315)
+|...+++.||+++|+.+|++++.++|..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467789999999999999999999999999999999873
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00017 Score=75.27 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=123.0
Q ss_pred HHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 17 DLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 17 d~~~-~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
.|++ -+-+..++.++...+-.||+.|..+|+.+..+ -++.|+.++.. -|+.+|+.+|. |..+-+|-.|++-|+.++
T Consensus 116 ~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 116 QFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-DSREPIRNEAILLLSELV 194 (970)
T ss_pred HHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-hhhhhhchhHHHHHHHHH
Confidence 3444 34456677888889999999999999987665 67899999988 68999999987 467899999999999999
Q ss_pred cCCchhHHHHHHcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251 94 RHNKPGIEAFRLANGYAALRDALGSE----SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 94 R~~~~~~~~f~~~gGl~~L~~lL~s~----~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
|+++..++.+.=.+.+.-|..++... ..-+-..++.+|.+|+..+.+++..|.+-++|++|.++|..
T Consensus 195 k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 195 KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 99999888777678999999998753 35788999999999999999999999999999999999876
No 41
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.93 E-value=0.0001 Score=73.23 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=130.4
Q ss_pred HHcCChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 19 HSIGGLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 19 ~~~Ggl~~Ll~lL~s~~~--~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
..-||+..|++++.+++- .||..|+.++..|... +.++.|...| +..++.+-+....++..+-.+.-|.+|-.|.
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 346899999999998764 5799999999877643 4577888877 6666666555567888999999999999999
Q ss_pred chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
....+.++..||+..++-.....++.+.+.++.+|.+.+-.. ...++.+++....+-|.-|.-+.|.-+|-+|.-++..
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 988889999999999999999999999999999999876543 4556778888888888888888888888888888888
Q ss_pred HHcCC
Q 021251 176 LAREK 180 (315)
Q Consensus 176 L~~~~ 180 (315)
|++..
T Consensus 334 lat~K 338 (832)
T KOG3678|consen 334 LATNK 338 (832)
T ss_pred hhhhh
Confidence 76654
No 42
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.93 E-value=5.1e-05 Score=61.11 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 38 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
+|..-..+||+++-+|+.+|+.+.+.||++.+++...-| .++.+|..|+|||-+|+.+++.+++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 466778999999999999999999999999999985543 5789999999999999999999876654
No 43
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.91 E-value=0.00014 Score=71.75 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=143.1
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcC-C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-CHHHHHHc
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKN-S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEAN-GLEPLLSN 72 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s-~-------~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G-~l~~Ll~L 72 (315)
||.|....||-...-.|.+.|.+..++.+++. . .-.+-.+++..+.-+....+. .+++.+.+ .+..++.-
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHH
Confidence 67788888888888889999999999999876 1 234566778877777766554 45566665 78899999
Q ss_pred ccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHh
Q 021251 73 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDK 147 (315)
Q Consensus 73 L~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~ 147 (315)
+.++ +......+..||+|++|....+ ..|++.+-+..|+.+|.. .+.++|-.++.+|++|.- ...++..+..
T Consensus 324 ~~S~-d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~ 400 (604)
T KOG4500|consen 324 FRSD-DSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAP 400 (604)
T ss_pred hcCC-chhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccc
Confidence 9875 7899999999999999986554 678888999999999865 458999999999999996 3567889999
Q ss_pred cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 148 LGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 148 ~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.|+++.+...++...++++-+-+.++.-+.....
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 9999999999999999999999988877665554
No 44
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.87 E-value=6e-05 Score=82.54 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=129.6
Q ss_pred cCCCChhHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHH
Q 021251 10 ESIDMANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALG 87 (315)
Q Consensus 10 eniDnA~d~~~~Gg-l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ 87 (315)
.++.|..-++...| |..+|..|.+...+|..--+.+|.|+.=+-. ...+.+-+.|-+..|.........+......|.
T Consensus 381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS 460 (2195)
T KOG2122|consen 381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS 460 (2195)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence 45667888887655 5788899999888999889999999976532 334555566888777776443333344445556
Q ss_pred HhhhhhcCCchhH--------------------------------------------------HHHHHcCcHHHHHHhhc
Q 021251 88 AISSLIRHNKPGI--------------------------------------------------EAFRLANGYAALRDALG 117 (315)
Q Consensus 88 ALS~LiR~~~~~~--------------------------------------------------~~f~~~gGl~~L~~lL~ 117 (315)
||.||.-|+..+. +..+.++.+..|+..|+
T Consensus 461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence 6666655554422 22233566667777788
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 118 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 118 s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+.+..+-.++|..|-+|...++.+++.+.++|.|..|..|+++.|..+.+-+..+|.+|....+
T Consensus 541 S~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 541 SHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 8888888889999999998889999999999999999999999999999999999999987774
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.83 E-value=4.5e-05 Score=58.11 Aligned_cols=87 Identities=29% Similarity=0.325 Sum_probs=70.0
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
|+.|++.|.++++..+|..|+++|+.+- .+ ..++.|..++++++..+|..|+++|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 5789999966789999999999999542 11 34888999999999999999999998772
Q ss_pred HhcCchHHHHHhhCCC-ChHHHHHHHHHHH
Q 021251 146 DKLGFPRLMLHLASSE-DPDVREAALRGLL 174 (315)
Q Consensus 146 ~~~g~v~~Lv~LL~s~-d~~v~e~aL~aL~ 174 (315)
+...++.|..++.++ +..+|..|..+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234888999988885 4557899988874
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.76 E-value=0.00065 Score=73.74 Aligned_cols=136 Identities=24% Similarity=0.279 Sum_probs=79.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.++.|+.+|+++++.||..|+.+|+.+. ..+.++.|+..|. |++..||..|+.+|..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~~---- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLPP---- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCc----
Confidence 5678889999999999999999998764 1235777888874 56888998888888776422111
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc------------CCcch----HHHHhcCchHHHHHhhCCCChHHH
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNE------------NASDC----SVVDKLGFPRLMLHLASSEDPDVR 166 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~------------~~~~~----~~l~~~g~v~~Lv~LL~s~d~~v~ 166 (315)
.+.|...|+++++.+|..|+.+|..+-.. ++.-+ ..+...+-.+.|..++..++..+|
T Consensus 686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR 759 (897)
T PRK13800 686 ------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVR 759 (897)
T ss_pred ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHH
Confidence 12344444444455555444444332100 00001 011122233445556666666666
Q ss_pred HHHHHHHHHHHcCC
Q 021251 167 EAALRGLLELAREK 180 (315)
Q Consensus 167 e~aL~aL~~L~~~~ 180 (315)
..+..+|..+....
T Consensus 760 ~~aa~aL~~~~~~~ 773 (897)
T PRK13800 760 IAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHHhcccc
Confidence 66666666665443
No 47
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0015 Score=70.75 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=104.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH-H
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-E 101 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~-~ 101 (315)
++.++..|+++++.||+.|+.+||-++.+ -|.+|++..+. .++.|+..+++...+.|+..|..|+=|..-.++... .
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~-l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER-LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 55667889999999999999999999987 57777765554 777899998887777888888888888776665432 2
Q ss_pred HHHHcCcHH-HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCC-h---HHHHHHHHHHH
Q 021251 102 AFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSED-P---DVREAALRGLL 174 (315)
Q Consensus 102 ~f~~~gGl~-~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d-~---~v~e~aL~aL~ 174 (315)
.++. +-+. .+..++++....+|.-++.+|...+.. ....|+.. -+++.|.+.|.+.+ . .+|-++..++.
T Consensus 470 pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A---A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 470 PYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADA---AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred HHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 2221 3333 555667788899999999999999863 22333322 35666777776643 3 45566555555
Q ss_pred HH
Q 021251 175 EL 176 (315)
Q Consensus 175 ~L 176 (315)
-+
T Consensus 546 li 547 (1075)
T KOG2171|consen 546 LI 547 (1075)
T ss_pred HH
Confidence 44
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.72 E-value=0.00024 Score=67.69 Aligned_cols=144 Identities=19% Similarity=0.285 Sum_probs=107.0
Q ss_pred CChHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc------cCCCCHHHHHHHHHHhhh
Q 021251 22 GGLAPLLGYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF------ASDPDVTVRTKALGAISS 91 (315)
Q Consensus 22 Ggl~~Ll~lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL------~sd~~~~vr~kAl~ALS~ 91 (315)
+.++.++.+|.+ ++.+++..|+.+++++.. ++..+..|.+.|+++.|..++ .+....+++-.+++++..
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 456777777764 566788999999999996 688999999999999999999 445667888999999999
Q ss_pred hhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhCC--CChHHHH
Q 021251 92 LIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS--EDPDVRE 167 (315)
Q Consensus 92 LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~Lv~LL~s--~d~~v~e 167 (315)
|.-+ +.....+...+-++.|+++++. ..+|+-+-++..+.+|+...+. ....++..|+++.+-.|... .|.++.+
T Consensus 225 LSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 225 LSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred HhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 9876 4445677788888999999986 4599999999999999976554 45666677777766666554 4555554
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0008 Score=70.85 Aligned_cols=176 Identities=12% Similarity=0.074 Sum_probs=139.9
Q ss_pred HHHHhhcCCC-ChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 4 ELQEHVESID-MANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 4 ~L~dLveniD-nA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
-|.+|||-.- ...-++..+++|.|+ +|+.=+.-+|-+++..+|-.|.+.+|+ ++++.|++...+..|+- -+..+
T Consensus 235 altyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDF-FSi~a 310 (1051)
T KOG0168|consen 235 ALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDF-FSIHA 310 (1051)
T ss_pred HHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHH-HHHHH
Confidence 3566777663 344556789999999 566778999999999999999999884 68999999999998875 46889
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc---chHHHHhcCchHHHHHhh
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS---DCSVVDKLGFPRLMLHLA 158 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~---~~~~l~~~g~v~~Lv~LL 158 (315)
+++|+...+|+|..-.+-.-.|+ ...+|.|..+|+..|.+....+|-.+.+++..... --+.++..|+|....+||
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v-~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFV-MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLL 389 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHH
Confidence 99999999999987544322333 35899999999999999999999999999875443 346777889999999999
Q ss_pred CCCCh----HHHHHHHHHHHHHHcCCcchh
Q 021251 159 SSEDP----DVREAALRGLLELAREKADGS 184 (315)
Q Consensus 159 ~s~d~----~v~e~aL~aL~~L~~~~~~~~ 184 (315)
..... .+.--..+.|..++.+++...
T Consensus 390 svt~t~Ls~~~~~~vIrmls~msS~~pl~~ 419 (1051)
T KOG0168|consen 390 SVTPTILSNGTYTGVIRMLSLMSSGSPLLF 419 (1051)
T ss_pred hcCcccccccchhHHHHHHHHHccCChHHH
Confidence 87543 355666788888888877443
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.68 E-value=0.00069 Score=73.51 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=87.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHH----------hhCCHHHHHHHHhc---------CCHHHHHHcccCCCCHHHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTI----------VQNNPRSQQLVMEA---------NGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~Lgti----------aqNNp~~Q~~vle~---------G~l~~Ll~LL~sd~~~~vr~ 83 (315)
-...++..|.++++.||..|+++|+.+ ...++.+|..+.+. ..++.|+.++. |++..||.
T Consensus 715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-D~d~~VR~ 793 (897)
T PRK13800 715 DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-DPDPLVRA 793 (897)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-CCCHHHHH
Confidence 445667788888888888888888753 12344454444422 12466666654 35677777
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 163 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~ 163 (315)
.|+.+|+.+-. +. .....+...|.+++..+|..|+.+|..+-. ...++.|+.+|..++.
T Consensus 794 aA~~aLg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 794 AALAALAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHHHHHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCH
Confidence 77777776521 11 112446677777777777777777765531 1355888999999999
Q ss_pred HHHHHHHHHHHHH
Q 021251 164 DVREAALRGLLEL 176 (315)
Q Consensus 164 ~v~e~aL~aL~~L 176 (315)
.||..|+.+|..+
T Consensus 853 ~VR~~A~~aL~~~ 865 (897)
T PRK13800 853 DVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999886
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.65 E-value=0.00077 Score=67.75 Aligned_cols=145 Identities=21% Similarity=0.220 Sum_probs=99.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
+..+.+=|+++++.+|..|..++++++ +|+.-+. .++.+.+++.+ +++-||.+|+.|+..+.+.++.....
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~- 151 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVED- 151 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHH-
Confidence 455566677888899999999999888 5555443 35667777764 57899999999999988876654322
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
. -++.+..+|.++++.++..|+.++..+ ..++.... -.-..+++.|..++...++-++..++++|..++...+.
T Consensus 152 --~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 152 --E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp --G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred --H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 1 367788888888889999998888888 22221111 11113455566666677777888888888777666543
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.61 E-value=0.0021 Score=64.18 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=135.1
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
-|..+...-+....|.+.+|+++|+.+|+. .+..++-+++-|+=-++=+ ++..+...+.+.++.|+.+++...-+.|
T Consensus 167 ~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKv 245 (429)
T cd00256 167 CLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKV 245 (429)
T ss_pred HHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHH
Confidence 355666666667778899999999999976 2557777777777666654 3455667778999999999988777788
Q ss_pred HHHHHHHhhhhhcCCc----h-----------------------------------------------------------
Q 021251 82 RTKALGAISSLIRHNK----P----------------------------------------------------------- 98 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~----~----------------------------------------------------------- 98 (315)
-+-++.++-|++-... .
T Consensus 246 vRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s 325 (429)
T cd00256 246 IRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS 325 (429)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 8888888888876320 0
Q ss_pred -----------------hHHHHHHcC--cHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 021251 99 -----------------GIEAFRLAN--GYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA 158 (315)
Q Consensus 99 -----------------~~~~f~~~g--Gl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL 158 (315)
+...|.+.+ -+..|+.+|. ++|+.+..-||+=|+.++...|..+..+.+.|.=..++.|+
T Consensus 326 g~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 326 GRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred CCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh
Confidence 112222222 2346777784 67889999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHcCC
Q 021251 159 SSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 159 ~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.++|.+|+-.||.|+..|..++
T Consensus 406 ~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred cCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876543
No 53
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.54 E-value=0.00015 Score=47.28 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=36.0
Q ss_pred CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ 51 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq 51 (315)
+++..+.+.|++++|+++|.+++.+++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
No 54
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.54 E-value=0.0014 Score=56.80 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=105.5
Q ss_pred hhHHHHcCChHHHHHhhcCCC------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC-CHHHHHHHHH
Q 021251 15 ANDLHSIGGLAPLLGYLKNSH------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALG 87 (315)
Q Consensus 15 A~d~~~~Ggl~~Ll~lL~s~~------~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~-~~~vr~kAl~ 87 (315)
|..|++.||+..|+++++++. .++-..+..+.-.+.... .+....+....+.+....+.... +..+...|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 789999999999999998754 467788888887777754 44556667777888888877654 6788899999
Q ss_pred HhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251 88 AISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 142 (315)
Q Consensus 88 ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~ 142 (315)
-|=+++-+++..+..+-+.=-++-|+..|+..+..+|.+|..++.+|+..-++.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 9999999888878888787889999999999999999999999999997665544
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=97.49 E-value=0.0048 Score=65.62 Aligned_cols=144 Identities=12% Similarity=0.164 Sum_probs=110.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
+++-+++++.+++.++|...--.+.+.+..+|+. .++ ++..|.+=+. ++++.+|.-|+.++|++.- + .
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--alL---aINtl~KDl~-d~Np~IRaLALRtLs~Ir~--~----~ 136 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--ALL---AVNTFLQDTT-NSSPVVRALAVRTMMCIRV--S----S 136 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HHH---HHHHHHHHcC-CCCHHHHHHHHHHHHcCCc--H----H
Confidence 4566667777778888888877777777777653 222 2344455544 4689999999999999742 1 2
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+++ -.+..+.++|.+.++-||++|+.++..+...++ +.+.+.|+++.|..+|...|..++-.|+.+|..+...++.
T Consensus 137 i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 137 VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 221 356678999999999999999999999987655 3556778999999999999999999999999999877653
No 56
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.001 Score=71.34 Aligned_cols=168 Identities=20% Similarity=0.149 Sum_probs=134.6
Q ss_pred ChhHHHHcCChHHHHHhhcC-C--CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251 14 MANDLHSIGGLAPLLGYLKN-S--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS 90 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s-~--~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS 90 (315)
...|++|-+|...++..|.. + +++-|..||.+|+.++.|-+.-|+..++.+.+..-+..+..++.+-+|.-..-+|+
T Consensus 546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG 625 (1387)
T ss_pred hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44589999999999999876 2 57899999999999999999999999999999999999876556788888999999
Q ss_pred hhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----CcchHHH-----------HhcCchH---
Q 021251 91 SLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----ASDCSVV-----------DKLGFPR--- 152 (315)
Q Consensus 91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~----~~~~~~l-----------~~~g~v~--- 152 (315)
.|=.++..++-.=...++...|..+|+.+.+.+|..|+|+|..++.+. ++....+ .-...+.
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 999999988777778899999999999999999999999999999853 2211111 0112232
Q ss_pred -HHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 153 -LMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 153 -~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.++.++....+-++....-+|..++.+..
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 45556666777788777778877766554
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.46 E-value=0.0015 Score=55.46 Aligned_cols=130 Identities=11% Similarity=0.107 Sum_probs=101.4
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 25 APLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 25 ~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
..|+.-. +..+.+-+++..-=++|.+- .|..-.++.+.+++..++.-|.. .++.+.+-++.+|||+|-... +.+.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~-n~~~I 95 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKT-NAKFI 95 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChH-HHHHH
Confidence 3444322 34688888888878888886 58888899999999999999875 689999999999999998744 44666
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 157 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~L 157 (315)
++++|++.++.+++|+...+--.|+.++.+|...+...++.+..--+++.+...
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 789999999999999998888888888888887666666666554444444433
No 58
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.44 E-value=0.0004 Score=48.84 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021251 79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 134 (315)
Q Consensus 79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L 134 (315)
+.+|..|+++|++++.+.......+. ...++.|..+|.+++..+|..|+++|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36899999999999988877666654 47899999999999999999999999864
No 59
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.44 E-value=0.0035 Score=63.06 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=111.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
-|+..+++++.+.+..+|..+--.+..+...++.. .++ ++..+.+=|.+ +++.+|.-|+.+||+++ .+...
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~kdl~~-~n~~~~~lAL~~l~~i~--~~~~~- 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQKDLNS-PNPYIRGLALRTLSNIR--TPEMA- 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHHHHCS-SSHHHHHHHHHHHHHH---SHHHH-
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHHhhcC-CCHHHHHHHHhhhhhhc--ccchh-
Confidence 47889999999999999999999999999998873 222 34455556665 68999999999999986 22222
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
...++.+..++.++++-+|++|+.++..+...+|+ .+... +++.+..++...|+.++..|+.++..+
T Consensus 113 ----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 113 ----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 23578899999999999999999999999986554 33344 789999999989999999999999999
No 60
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0025 Score=66.79 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=132.1
Q ss_pred HcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCH--------H--------HHHHHHhc-CCHHHHHHcccCCCCHH
Q 021251 20 SIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNP--------R--------SQQLVMEA-NGLEPLLSNFASDPDVT 80 (315)
Q Consensus 20 ~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp--------~--------~Q~~vle~-G~l~~Ll~LL~sd~~~~ 80 (315)
..-|+++||..|+. .++++-..|...+.++..+.. . +.+.|++. +-+..|+..+.. .|-.
T Consensus 59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~ 137 (970)
T KOG0946|consen 59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFH 137 (970)
T ss_pred HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchh
Confidence 36789999999976 589999999999998877642 2 33455555 678888888876 5889
Q ss_pred HHHHHHHHhhhhhcCCchhH-HHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 021251 81 VRTKALGAISSLIRHNKPGI-EAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA 158 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~-~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL 158 (315)
||.-|+--|+++.++.+.-. +.+.. --|++-|+.+|.....-+|-.++.+|..|...++..++.+.=.++...|..++
T Consensus 138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII 217 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII 217 (970)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886644 44443 46999999999999999999999999999998888888888778999999999
Q ss_pred CCC----ChHHHHHHHHHHHHHHcCCc
Q 021251 159 SSE----DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 159 ~s~----d~~v~e~aL~aL~~L~~~~~ 181 (315)
..+ ..-|.+-|+..|.+|.+.+.
T Consensus 218 eeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 218 EEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 872 23588999999999987764
No 61
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.39 E-value=0.00067 Score=54.64 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKL 148 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~ 148 (315)
+|...+-.|++++-.++..++.+.+.||++.++....- .++-++..|.|+|++|+.++++.++.+.++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 46677889999999999999999999999999998654 469999999999999999999888777655
No 62
>PF05536 Neurochondrin: Neurochondrin
Probab=97.34 E-value=0.0037 Score=64.33 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=117.9
Q ss_pred HHHcCChHHHHHhhcC-------CCHHHHHHHHHHHHHHhhCCHHHH--HHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251 18 LHSIGGLAPLLGYLKN-------SHANIRAKAGEVVTTIVQNNPRSQ--QLVMEANGLEPLLSNFASDPDVTVRTKALGA 88 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s-------~~~~vR~~Aa~~LgtiaqNNp~~Q--~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A 88 (315)
+.+.=|+.-+-++|++ +....+.-|..++++.+. .|+.. ..++ +-+|.|+.++.+..+..+...|+..
T Consensus 46 v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqc 122 (543)
T PF05536_consen 46 VFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQC 122 (543)
T ss_pred HHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHH
Confidence 4444457888899988 457799999999999998 56553 3334 4499999999876555888999999
Q ss_pred hhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch--HHHHh-cCchHHHHHhhCCCChHH
Q 021251 89 ISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC--SVVDK-LGFPRLMLHLASSEDPDV 165 (315)
Q Consensus 89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~--~~l~~-~g~v~~Lv~LL~s~d~~v 165 (315)
|..++ .++.+.+.|++.|+++.|.+++.+ ....+..|+.++.+++....... +.... ..++..+...+...+...
T Consensus 123 L~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~ 200 (543)
T PF05536_consen 123 LLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGED 200 (543)
T ss_pred HHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccch
Confidence 99999 778889999999999999999988 67778999999999987533110 00000 145566667777666666
Q ss_pred HHHHHHHHHHHHcCC
Q 021251 166 REAALRGLLELAREK 180 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~ 180 (315)
+-..+..|..+....
T Consensus 201 kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 201 KFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHhcCcC
Confidence 666777777776665
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=97.30 E-value=0.021 Score=58.79 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=131.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH---HHHHhcCCHHHHHHcccCC------CCHHHHHHHHHHhhhhhc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ---QLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIR 94 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q---~~vle~G~l~~Ll~LL~sd------~~~~vr~kAl~ALS~LiR 94 (315)
+.-++++|++.+.+=|-.+.-.+..++.+++..+ +.|.+.=|.+=|-+||.+. +....+.=|+.-|+++|+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5667889999888888889999999999877433 3477776666677777652 235677888999999998
Q ss_pred CCchh-HHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251 95 HNKPG-IEAFRLANGYAALRDALGSESV-KFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG 172 (315)
Q Consensus 95 ~~~~~-~~~f~~~gGl~~L~~lL~s~~~-kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a 172 (315)
...-+ ...|+ +-+|.|++++.+.+. .+...|..+|..++ ..+..++.+.+.|.++.|++.+.+ +...+|.|+.+
T Consensus 87 ~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 87 DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 43222 13443 579999999988766 99999999999999 578899999999999999999988 77778999999
Q ss_pred HHHHHcCCcchh-hhhhhhhHHHHHHHHHHHHhhcc
Q 021251 173 LLELAREKADGS-AIKLAEDNEKLKQLLGERIKGIS 207 (315)
Q Consensus 173 L~~L~~~~~~~~-~~c~~~~~~~L~~~L~~~~~~i~ 207 (315)
+..++....... ... ......+...|.+.+....
T Consensus 163 L~~Lls~~~~~~~~~~-~~~l~~il~~La~~fs~~~ 197 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAED-SQLLHSILPSLARDFSSFH 197 (543)
T ss_pred HHHHHHhcchhhhhhh-HHHHHHHHHHHHHHHHhhc
Confidence 999877655222 111 1122334444555555444
No 64
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.001 Score=67.25 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=109.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCH
Q 021251 42 AGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV 121 (315)
Q Consensus 42 Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~ 121 (315)
++.++-.++..--..+.-+..+.+.++||++|+. ++.-+.--++.+|+|.+-.+.+-+..|+..|-+.+|+..+.+.|.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3334445555444556666677889999999875 667777789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 122 KFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 122 kl~~kA~~lLs~Ll~~~~~~~~-~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
.+|.++.|.++++.-+.....+ .+...-.+..++.+.+.++-.+|+.++..|.++.=
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 9999999999999976544322 33444557889999999999999999999999854
No 65
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.22 E-value=0.0007 Score=55.98 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=63.1
Q ss_pred CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
..+..|+++|.++.++.+..-|.+=|+.++|+++.+...+-+.||=..++.+|.++|+.++..|+.++..|+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46889999996666788888899999999999999877777889999999999999999999999999988753
No 66
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.21 E-value=0.0063 Score=59.94 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=115.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCC----HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANG----LEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~----l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
-.|.+++++|...+.-+.+.+.++|+.+++..+.. ++.+. ...|..++.++.+.....-|+.+|..+.|..
T Consensus 114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~- 188 (442)
T KOG2759|consen 114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD- 188 (442)
T ss_pred cchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-
Confidence 35899999999999999999999999998864422 12211 2233444455456677788899999999974
Q ss_pred hhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHH
Q 021251 98 PGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLL 174 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~ 174 (315)
+.+-.|+..+|+..++..+.+. +-.+|-..++++--|.- ++...+.+...+.++.|+.+++. ....|..-++.++.
T Consensus 189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~ 267 (442)
T KOG2759|consen 189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFR 267 (442)
T ss_pred chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999543 47888888888877765 45666777788999999999987 34456666677777
Q ss_pred HHHcCCc
Q 021251 175 ELAREKA 181 (315)
Q Consensus 175 ~L~~~~~ 181 (315)
++....+
T Consensus 268 Nll~k~~ 274 (442)
T KOG2759|consen 268 NLLDKGP 274 (442)
T ss_pred HHhccCc
Confidence 8877774
No 67
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.18 E-value=0.00086 Score=43.61 Aligned_cols=39 Identities=33% Similarity=0.375 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc
Q 021251 55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 55 ~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR 94 (315)
..+..+++.|+++.|+.++.+ .+..++..|+|||++|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence 466788999999999999985 589999999999999863
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.08 E-value=0.0029 Score=66.12 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=103.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR- 104 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~-vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~- 104 (315)
++..|++..+.+|.+|+.+++.++---..|++. .+.+ .--.|..-|..+ .++|.-..+.||.+++.-... .+.+-
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvvLyEylgee-ypEvLgsILgAikaI~nvigm-~km~pP 880 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVVLYEYLGEE-YPEVLGSILGAIKAIVNVIGM-TKMTPP 880 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHHHHHhcCcc-cHHHHHHHHHHHHHHHHhccc-cccCCC
Confidence 346788999999999999999887543334332 2222 122466777654 566655555555554422100 01111
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
-.+-+|-|..+|++...|++..+..++..++...++....=.=+.++=-|+++|.+.+..+|..|.++++.+++--
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 1356788999999999999999999999999887774332223345667889999999999999999999988653
No 69
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.08 E-value=0.012 Score=58.12 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=127.3
Q ss_pred ChhHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 14 MANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
.--.|+...|+..++..|.| .+-.++-+.+.||=-++= ||...+.+...+.++.|..++++++-+.|-+-.+..+-|
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~N 268 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRN 268 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667888888887733 566788888888877776 466667777779999999999887777777777777888
Q ss_pred hhcCCch------hHHHHHH------------------------------------------------------------
Q 021251 92 LIRHNKP------GIEAFRL------------------------------------------------------------ 105 (315)
Q Consensus 92 LiR~~~~------~~~~f~~------------------------------------------------------------ 105 (315)
++-..+. .....+.
T Consensus 269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence 7766531 0000000
Q ss_pred ----------------cCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHH
Q 021251 106 ----------------ANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREA 168 (315)
Q Consensus 106 ----------------~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~ 168 (315)
.--+.+|+.+|+++ |+.+..-||+=|..+.+..|..+..+.+.|.=+.++.|++++|++|+-+
T Consensus 349 ~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ 428 (442)
T KOG2759|consen 349 SEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYH 428 (442)
T ss_pred ccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHH
Confidence 12345777888764 5888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 021251 169 ALRGLLELAREK 180 (315)
Q Consensus 169 aL~aL~~L~~~~ 180 (315)
|+.|+-.|..++
T Consensus 429 ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 429 ALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHHhhc
Confidence 999998876554
No 70
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=97.07 E-value=0.012 Score=54.87 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH 156 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~ 156 (315)
...+...|+..|--+|--|++.+..|-...++.+|+++|. +..+.++..++.+|.+++-.++.+.+.|.+.+.+..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 3456677888888888889999999999999999999995 467999999999999999889999999999999999999
Q ss_pred hhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251 157 LASSE--DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 157 LL~s~--d~~v~e~aL~aL~~L~~~~~ 181 (315)
++++. +.+++-+++..|.-......
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLMPET 210 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHcccC
Confidence 99984 57799999999876654443
No 71
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.031 Score=56.32 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=127.7
Q ss_pred HHhhcCCCChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHH
Q 021251 6 QEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK 84 (315)
Q Consensus 6 ~dLveniDnA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~k 84 (315)
..++-|-.||.-++...|+..|+ +-+++.++-+ ..++.+++|+.-..|..|+++ +.-|..+++.+.+++.-..
T Consensus 451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~E 524 (791)
T KOG1222|consen 451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLE 524 (791)
T ss_pred HHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHH
Confidence 56777888999999999999999 4677776644 568899999988789999998 6677777777888899999
Q ss_pred HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--
Q 021251 85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-- 160 (315)
Q Consensus 85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-- 160 (315)
.++.++++.--.-+..+.+-..+-+|-+...|+.. ...+....+-++...+. +......+...|+|+.+++||+.
T Consensus 525 ClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 525 CLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred HHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhc
Confidence 99999999876556555555678889999888862 24455555555555553 23334567788999999999998
Q ss_pred CChHHHHHHHHHHHHHHcC
Q 021251 161 EDPDVREAALRGLLELARE 179 (315)
Q Consensus 161 ~d~~v~e~aL~aL~~L~~~ 179 (315)
.|.++.-..+....++..|
T Consensus 604 eDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 604 EDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 5667777777777787776
No 72
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.05 E-value=0.02 Score=63.66 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=126.7
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHc--------
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-------- 72 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~L-------- 72 (315)
.+.++..+-+.-..+...|-++.|+++|.-+ +.+.|.+|-.+|=+|+-++|.....=.+..+|..|=++
T Consensus 217 ~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~ 296 (2195)
T KOG2122|consen 217 TFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCW 296 (2195)
T ss_pred HHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666778899999999999653 56899999999999999999865554454555444322
Q ss_pred --ccC-C---CCHHHHHHHHHHhhhhhcCC--chhHHHHHHcCcHHHHHHhhcCC------------CHHHHHHHHHHHH
Q 021251 73 --FAS-D---PDVTVRTKALGAISSLIRHN--KPGIEAFRLANGYAALRDALGSE------------SVKFQRKALNLIQ 132 (315)
Q Consensus 73 --L~s-d---~~~~vr~kAl~ALS~LiR~~--~~~~~~f~~~gGl~~L~~lL~s~------------~~kl~~kA~~lLs 132 (315)
+.. + .+..++-..--|++.|..-. +.......+.||+..|.++++-+ ...+|+.|..+|.
T Consensus 297 ~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALT 376 (2195)
T KOG2122|consen 297 TWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALT 376 (2195)
T ss_pred HHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Confidence 211 1 12233333334555555432 34456677889999999987631 3689999999999
Q ss_pred HHhhcCCcchHHHHhc-CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 133 YLLNENASDCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 133 ~Ll~~~~~~~~~l~~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
+|..++..++..++.+ ||++.+|..|.+...+++.-....|-+|.
T Consensus 377 NLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLS 422 (2195)
T KOG2122|consen 377 NLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLS 422 (2195)
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 9999888889899866 99999999999999898888888888884
No 73
>PTZ00429 beta-adaptin; Provisional
Probab=97.04 E-value=0.01 Score=63.26 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=104.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++++.++|.+.++-||..|+.++..+-+.+|. .+.+.|.++.|..+|. |.+..|...|+.+|..+..+.+....
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l~-- 215 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKIE-- 215 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhhH--
Confidence 34556778889999999999999999998884 3556788899999875 67899999999999998766543222
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
...+-+.-|...|..-++-.|...+.+|... .|.+.... ..++..+...|.+.+.-|.-.|++++..+...
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 2234455566667666788888777666442 33332222 25677777888888888888888887777654
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.92 E-value=0.01 Score=59.09 Aligned_cols=130 Identities=20% Similarity=0.086 Sum_probs=74.8
Q ss_pred ChHHHHHhh-cCCCHHHHHHHHHHHHHH-------------hhCCHHHHHHHHhc-------CCHHHHHHcccCCCCHHH
Q 021251 23 GLAPLLGYL-KNSHANIRAKAGEVVTTI-------------VQNNPRSQQLVMEA-------NGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 23 gl~~Ll~lL-~s~~~~vR~~Aa~~Lgti-------------aqNNp~~Q~~vle~-------G~l~~Ll~LL~sd~~~~v 81 (315)
+++.++..| ..++.+++..|++++... ...++.++..+.+. +..+.|+.+|++ .++.+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~-~~p~v 133 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAA-SEPPG 133 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcC-CChHH
Confidence 456666666 346677777666555311 11112122222211 224445555543 34455
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
|..++.+++. | ...-.+.+..+|++.+..++..|+.+|.+|-.. ..++.|...+.+.
T Consensus 134 R~aal~al~~--r----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~ 190 (410)
T TIGR02270 134 RAIGLAALGA--H----------RHDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDS 190 (410)
T ss_pred HHHHHHHHHh--h----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCC
Confidence 5555444333 1 112345677778888888888888888776532 4566677778889
Q ss_pred ChHHHHHHHHHHHHH
Q 021251 162 DPDVREAALRGLLEL 176 (315)
Q Consensus 162 d~~v~e~aL~aL~~L 176 (315)
+..||..|+.++..+
T Consensus 191 ~~~VR~aA~~al~~l 205 (410)
T TIGR02270 191 DPEVRFAALEAGLLA 205 (410)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999888887665
No 75
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.87 E-value=0.073 Score=47.77 Aligned_cols=188 Identities=15% Similarity=0.156 Sum_probs=110.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhCC--HHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC
Q 021251 32 KNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN 107 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~LgtiaqNN--p~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 107 (315)
.+.+=+.|..|..-|..++..+ ......+++. ..+..+...+.+ ....|...|+..|+.++++....+..+.. .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 3466778888888888887766 2223333332 455667777654 46688999999999999887776666643 5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251 108 GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 187 (315)
Q Consensus 108 Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c 187 (315)
-++.|+..+.+...-++..|..+|..++...+..... ++..+.....+.+..+|..++..|..+....+.....+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 7788999999988999999999999999754411111 15567778888999999999999999988876222111
Q ss_pred hhhh--HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251 188 LAED--NEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE 234 (315)
Q Consensus 188 ~~~~--~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~ 234 (315)
... ...+...+...+.+-. .++|+.-.-|-..+..+|++
T Consensus 170 -~~~~~~~~l~~~l~~~l~D~~-------~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 -QKSAFLKQLVKALVKLLSDAD-------PEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---HHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHHH-H
T ss_pred -cccchHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHHHHCCH
Confidence 111 1334444444433322 34666666665556677776
No 76
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.039 Score=57.92 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=108.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH-HHHHcC
Q 021251 29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE-AFRLAN 107 (315)
Q Consensus 29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~-~f~~~g 107 (315)
.-+++++-.-|..|+.+.|.+--.=...+-.-+..+++|.++.++. |++.-++..+.|+++.++.+.+.... ......
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 3567788899999999999888654445555566789999999987 78899999999999999988765432 222334
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhc---CchHHHHHhhCC---CChHHHHHHHHHHHHH
Q 021251 108 GYAALRDALGSESVKFQRKALNLIQYLLNENASD-----CSVVDKL---GFPRLMLHLASS---EDPDVREAALRGLLEL 176 (315)
Q Consensus 108 Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-----~~~l~~~---g~v~~Lv~LL~s---~d~~v~e~aL~aL~~L 176 (315)
-+++++..|. +.+++-.++||++..|+..-.+. .....+- -+|..|++.-+. .+..+|-.|..||..+
T Consensus 450 ~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 450 KLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 4555555554 46999999999999998532111 0001111 123334333333 4567999999999999
Q ss_pred HcCCcchh
Q 021251 177 AREKADGS 184 (315)
Q Consensus 177 ~~~~~~~~ 184 (315)
++.+++.+
T Consensus 529 Ik~st~~v 536 (859)
T KOG1241|consen 529 IKNSTDDV 536 (859)
T ss_pred HHcCcHHH
Confidence 99998665
No 77
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.76 E-value=0.0054 Score=63.02 Aligned_cols=150 Identities=14% Similarity=0.172 Sum_probs=103.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH--HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--hH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRS--QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GI 100 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~--Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--~~ 100 (315)
..++.+|++..+.+|.+|+..+|.++.--..| -+.+.+.|.+ |..-|..+ .+++.-..+.||+|+..-+.- .+
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhcccccC
Confidence 34567889999999999999999876421111 1223333433 56666654 566666556666665432211 01
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
-- -.|-+|.|..+|.+...|+......++..++...|+....=.=+.++=.|+.+|.+.+..+|..|..+++.+++-
T Consensus 684 pP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred Cc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 11 246789999999999999999999999999988776433222234566788999999999999999999988765
No 78
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.60 E-value=0.0054 Score=50.74 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=62.7
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 109 YAALRDAL-GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 109 l~~L~~lL-~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
+..|+.+| .+.|+.....||.=|..++...|..+.++.+.|+=..++.|+.++|.+|+..||.++..+..++
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 56788888 4568999999999999999999999999999999999999999999999999999998876543
No 79
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0067 Score=61.50 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=119.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-H
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-I 100 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-~ 100 (315)
...++|++.|..|+..|..-+...|.+.+---...|..|++.|.+..|++++.+ +|..+|.+..|.+--+.-|+... +
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s-KDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS-KDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc-chhhhhhcchhhhhhhhhcCcchhh
Confidence 346788899988888888888888888887767789999999999999999986 68899999999999998887554 4
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC---cchHHHHhcC----chHHHHHhhCCCCh-HHHHHHHHH
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA---SDCSVVDKLG----FPRLMLHLASSEDP-DVREAALRG 172 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~---~~~~~l~~~g----~v~~Lv~LL~s~d~-~v~e~aL~a 172 (315)
-+|+..-|...++.....++-++|.....++++++.... ..++.+.++. +.+.++.-++..++ .+++. +..
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~-~yi 588 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG-CYI 588 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh-HHH
Confidence 477888999999999999999999999999999986332 2334444332 34456666666554 45554 445
Q ss_pred HHHHHcC
Q 021251 173 LLELARE 179 (315)
Q Consensus 173 L~~L~~~ 179 (315)
|..++..
T Consensus 589 lv~~aa~ 595 (743)
T COG5369 589 LVRNAAC 595 (743)
T ss_pred HHHHHhc
Confidence 5555443
No 80
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.53 E-value=0.047 Score=54.91 Aligned_cols=255 Identities=16% Similarity=0.147 Sum_probs=155.3
Q ss_pred ChHHHHHhhcCCCChhHHHHcCChHHHHHhh----------cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHH
Q 021251 1 MLDELQEHVESIDMANDLHSIGGLAPLLGYL----------KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 70 (315)
Q Consensus 1 lLe~L~dLveniDnA~d~~~~Ggl~~Ll~lL----------~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll 70 (315)
.|+.|.-|-.+-.++..+..-.|+..|+++= ..++..+...|.+||+|+.=++|..|+.+++.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3788899999999999999988999998764 346889999999999999999999999999999999999
Q ss_pred HcccCCC----CH---HHHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcC-----------------CCHHHHH
Q 021251 71 SNFASDP----DV---TVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGS-----------------ESVKFQR 125 (315)
Q Consensus 71 ~LL~sd~----~~---~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s-----------------~~~kl~~ 125 (315)
..|+... +. -+-.+-+|-++.+. ...+..++ +.+|+..|...|.. .+.....
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 9998751 22 23345555555443 22344444 56888888877632 1234455
Q ss_pred HHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-------C--CChHHHHHHHHHHHHHHcCCcch---------h---
Q 021251 126 KALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-------S--EDPDVREAALRGLLELAREKADG---------S--- 184 (315)
Q Consensus 126 kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~-------s--~d~~v~e~aL~aL~~L~~~~~~~---------~--- 184 (315)
.++-++-++....+.... -.....+++++.++. + +-....-++.++|.++--.+... .
T Consensus 158 EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 158 EILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 666666677654443322 122234444444432 1 33567888889988872111100 0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC----CCcccccceeecCCCCC--CCccccc
Q 021251 185 AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE----PSSLRDKGLLVLPGEDA--PPPDVAS 258 (315)
Q Consensus 185 ~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~----~~~~~~~~~~~~~~~~~--~~~~~~~ 258 (315)
....-..-..|.+.|++++..-.... ..+.+.=+=.++..++.. +..+|. .|||.+.. .||+.-.
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~------l~~~l~PlL~lL~~~~~~~~~~Rk~lr~---~lLP~~~Dr~~~~e~~~ 307 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALK------LDELLTPLLTLLTRLARAAREVRKYLRA---RLLPPDKDRKKPPEKGD 307 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCccc------chhhHhhHHHHHHHHHHhcHHHHHHHHH---HhCCChhhcccCCCCCc
Confidence 00001225678888999997765321 112222223344444433 222333 47777654 7777644
Q ss_pred cccCChhhhh
Q 021251 259 KHFEPPLRAW 268 (315)
Q Consensus 259 ~~~~~~~~~~ 268 (315)
-...--+|-+
T Consensus 308 tL~~rLlrLm 317 (446)
T PF10165_consen 308 TLRSRLLRLM 317 (446)
T ss_pred chHHHHHHHh
Confidence 4333333444
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.48 E-value=0.034 Score=52.92 Aligned_cols=106 Identities=26% Similarity=0.293 Sum_probs=70.5
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC------------c----------h---hHH----HH---HHcCcHHHH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHN------------K----------P---GIE----AF---RLANGYAAL 112 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~------------~----------~---~~~----~f---~~~gGl~~L 112 (315)
.++.|+.++.++.+..||..|.++|..+--.. . . .+. .+ -..-.++.+
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l 185 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLL 185 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHH
Confidence 57788888876677888888888888753221 0 0 000 00 112345677
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 113 RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 113 ~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
...+.+.+..++..|...|..+.... ..++..+...+..++..++.+++.+|+.+-..
T Consensus 186 ~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 186 IELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE 243 (335)
T ss_pred HHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence 77777777788888887777776543 34567788888888888888888777765433
No 82
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.44 E-value=0.036 Score=54.98 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=82.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH-------------HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRS-------------QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~-------------Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L 92 (315)
.|+.+|.+ +++.+.|+..++.+....+.+ ++.|+.. .+|+|++-++.. +...|..-+.|||.+
T Consensus 275 ~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~-~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 275 KLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEA-DDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhc-ChhhHHHHHHHHHHH
Confidence 34445544 889999999999998874544 3333333 688888887764 456899999999999
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 139 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~ 139 (315)
++|-|...-.-.-..-+|.|++.|..++..++..++..+..++.+.+
T Consensus 351 l~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 351 LKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 99876432111123468999999999999999999999999998653
No 83
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.025 Score=56.90 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=88.4
Q ss_pred CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 12 IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 12 iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
.+|.+++..+|.+.-|+++....++++|.....++=+++-+. ..+..++..|.+|.|..++.+++.-.+..+-+|-+|+
T Consensus 335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~ 413 (791)
T KOG1222|consen 335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSC 413 (791)
T ss_pred ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccchhhhhhhhhhcc
Confidence 489999999999999999999999999999999999998753 4677889999999999999998888899999999998
Q ss_pred hhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHH
Q 021251 92 LIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRK 126 (315)
Q Consensus 92 LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~k 126 (315)
.......|.-...++.++..+-+ .+.++-..
T Consensus 414 ----dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~ 445 (791)
T KOG1222|consen 414 ----DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLA 445 (791)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhcCCceecHH
Confidence 23444566566677776665433 33444433
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.36 E-value=0.18 Score=50.31 Aligned_cols=171 Identities=19% Similarity=0.154 Sum_probs=113.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHH-------------HhhCCHHHHHHHHhc------CCHHHHHHcccCCCCHHHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTT-------------IVQNNPRSQQLVMEA------NGLEPLLSNFASDPDVTVRTK 84 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~Lgt-------------iaqNNp~~Q~~vle~------G~l~~Ll~LL~sd~~~~vr~k 84 (315)
+..++..|.+.++.+|..++..+|. +...+|.++..+++. ...+.|+.+|+ +.+..||..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~-d~d~~Vra~ 166 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALT-HEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhc-CCCHHHHHH
Confidence 6777788888888888888877753 234566666555532 34778999987 578999999
Q ss_pred HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-------------CCcch---HHHHhc
Q 021251 85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-------------NASDC---SVVDKL 148 (315)
Q Consensus 85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-------------~~~~~---~~l~~~ 148 (315)
|+.+|+.+-+. ..++.|..++.+.++.++.-|++.+..+-.. +.... ..+...
T Consensus 167 A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 167 ALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred HHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 99999987542 3455577889999999999999887655210 00000 011111
Q ss_pred ----CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch--hhhhhhhhHHHHHHHHHHHHhhccCCCh
Q 021251 149 ----GFPRLMLHLASSEDPDVREAALRGLLELAREKADG--SAIKLAEDNEKLKQLLGERIKGISLMSP 211 (315)
Q Consensus 149 ----g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~--~~~c~~~~~~~L~~~L~~~~~~i~~~~~ 211 (315)
..++.|+.+++.+. ++..++.+|+.+-...--. ...+ . +..+...-.+-++.|.+++-
T Consensus 236 ~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~l-~--d~~~aR~A~eA~~~ItG~~l 299 (410)
T TIGR02270 236 AGGPDAQAWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEAM-R--EPPWARLAGEAFSLITGMDV 299 (410)
T ss_pred CCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHHh-c--CcHHHHHHHHHHHHhhCCCc
Confidence 34566666666644 8999999998765444311 1112 2 23367778888888998753
No 85
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.27 E-value=0.0076 Score=37.62 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN 52 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN 52 (315)
+|.++++|++++++||..|+++++.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68889999999999999999999999874
No 86
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.25 E-value=0.02 Score=49.90 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=80.7
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch-hHHHHHHcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP-GIEAFRLANGYAALRDALGS---------ESVKFQRKALNLIQYL 134 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGl~~L~~lL~s---------~~~kl~~kA~~lLs~L 134 (315)
....+++.+.+.+. . .+.+..|.-..|..+. ..+.|+..||+..|+.+|.. .+..+...++.+|..|
T Consensus 67 ~p~~~i~~L~~~~~-~--~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPS-T--SKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT---H--HHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCc-c--HHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34556777765422 2 2788888888887654 57899999999999999853 3468889999999999
Q ss_pred hhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 135 LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 135 l~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
+....-....+...+++..++..|.+++..++..|+..|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9653333344455689999999999999999999999988775
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.23 E-value=0.015 Score=46.31 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=51.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
.+++++.++..++..||+.||.++.+++.. .+..++.+ .++..|.+++. |+++.||..| ..|-++.
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA-DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc-CCchhHHHHH-HHHHHHh
Confidence 488999999999999999999999999974 45566654 57888888864 6788887655 5555544
No 88
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.22 E-value=0.051 Score=54.59 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=98.9
Q ss_pred CChhHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 13 DMANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
.|-.-+.+.| +..++.+-+ ....++....+.+|+++..+..+.-+.+++.|++...+.-++. +++.+.+.+..||+|
T Consensus 213 eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N 290 (832)
T KOG3678|consen 213 ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGN 290 (832)
T ss_pred hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhh
Confidence 4545566666 666666653 4678899999999999999876666778999999999988776 578998999999998
Q ss_pred hhcCC-chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 92 LIRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 92 LiR~~-~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
+.-|. ...+..+++...-.-|..+-.+.|.-++..||.++.-|+..
T Consensus 291 ~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 291 CALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 76654 55677777777778888888888999999999999998864
No 89
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.16 Score=54.07 Aligned_cols=151 Identities=19% Similarity=0.278 Sum_probs=105.7
Q ss_pred HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc----C---------CHHHHHHcccCCCCHHHHH
Q 021251 17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----N---------GLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~----G---------~l~~Ll~LL~sd~~~~vr~ 83 (315)
+-.++.|+..+|..+..++. +-..-..+|-+++.+|.+.+.-+.-+ . ++..+.+=+. ++++.+|-
T Consensus 33 ~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~-d~N~~iR~ 110 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ-DPNEEIRG 110 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc-CCCHHHHH
Confidence 33444555555554443332 55555555555555555555444322 0 1222333333 47899999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 163 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~ 163 (315)
.|+.++|.+ |. ..+.. ..++.+.+++.+++..+|+.|+.++..+-+- ++....+.|.+..+..++...|+
T Consensus 111 ~AlR~ls~l-~~-----~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~~l~~D~dP 180 (757)
T COG5096 111 FALRTLSLL-RV-----KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILKELVADSDP 180 (757)
T ss_pred HHHHHHHhc-Ch-----HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHHHHhhCCCc
Confidence 999999986 22 23332 5688999999999999999999999999864 45678889999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 021251 164 DVREAALRGLLELARE 179 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~ 179 (315)
.+...|+.+|..+...
T Consensus 181 ~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 181 IVIANALASLAEIDPE 196 (757)
T ss_pred hHHHHHHHHHHHhchh
Confidence 9999999999887665
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.15 E-value=0.099 Score=45.78 Aligned_cols=96 Identities=24% Similarity=0.253 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc-hHHHHH
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF-PRLMLH 156 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~-v~~Lv~ 156 (315)
++.+|..++-+++-|+.-++...+. -++.+...|.++++.+|..|+..|++|+..+.. .-.|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHH
Confidence 4689999999999998877765443 467899999999999999999999999975322 11233 367778
Q ss_pred hhCCCChHHHHHHHHHHHHHHcC-Ccch
Q 021251 157 LASSEDPDVREAALRGLLELARE-KADG 183 (315)
Q Consensus 157 LL~s~d~~v~e~aL~aL~~L~~~-~~~~ 183 (315)
++..++..++..|..++..+... ++..
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 88889999999999999999888 4433
No 91
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.12 E-value=0.034 Score=49.37 Aligned_cols=144 Identities=22% Similarity=0.214 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhC-CHHHHHH----HH------hcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251 37 NIRAKAGEVVTTIVQN-NPRSQQL----VM------EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL 105 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqN-Np~~Q~~----vl------e~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 105 (315)
.||..|..+|.++++. .++.--. ++ ....-+.|+..+-.|++..+|..|+.+++.|..+.++-...--+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 4432100 11 12355678888888899999999999999999887553322221
Q ss_pred cC-------------------cHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchH--HHHhcCchHHHHHhhCCCCh
Q 021251 106 AN-------------------GYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCS--VVDKLGFPRLMLHLASSEDP 163 (315)
Q Consensus 106 ~g-------------------Gl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~--~l~~~g~v~~Lv~LL~s~d~ 163 (315)
.. -...|..+|+.+ +..+....+..+..|++..|..+= -+.. .++..+..++.+.|.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCC
Confidence 11 123455666654 577888888899999987776541 1111 345566677788999
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 021251 164 DVREAALRGLLELAREKA 181 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~ 181 (315)
+++..++.++..+..-.+
T Consensus 160 ~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQP 177 (182)
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 999999999999877654
No 92
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.06 E-value=0.24 Score=43.08 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=89.4
Q ss_pred HHHHHhcCCHHHHHHcccCCCC-----HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHH
Q 021251 57 QQLVMEANGLEPLLSNFASDPD-----VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALN 129 (315)
Q Consensus 57 Q~~vle~G~l~~Ll~LL~sd~~-----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~ 129 (315)
...|++.||+..|++++.+++. ...-..++.|...|.-|..-. ...+...=+.-++..... .+..+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4568999999999999987653 355667788888877765422 112222223334444433 36899999999
Q ss_pred HHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 130 LIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 130 lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
.|.+++.+.+.....+.+.=-++.|+.+|...+.+++..|+..+-.|-...+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999986555555666655689999999999999999999888777666543
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.06 E-value=0.094 Score=51.56 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=114.1
Q ss_pred HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 19 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 19 ~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
...|.+..++.+.++++..+|..|..++..++--||. .+.++||+..|++.+.. ...++....+.++-.+.- ++.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd-~p~ 179 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLD-SPR 179 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhC-Ccc
Confidence 3556677888888889999999999999999999995 58899999999999875 344577777777777764 344
Q ss_pred hHHHHHHcCcHHHHHHhhcCC-------CH--HHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhCCCChHHHHH
Q 021251 99 GIEAFRLANGYAALRDALGSE-------SV--KFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASSEDPDVREA 168 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s~-------~~--kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g~v~~Lv~LL~s~d~~v~e~ 168 (315)
..+.+...--+..+...+.+. +. ..-..+..++..++.+-+-..-.-. +...++.|+..|..++..+|+.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 444444333455555544332 22 3566677888888875443221111 2257899999999999999999
Q ss_pred HHHHHHHHHcCCc
Q 021251 169 ALRGLLELAREKA 181 (315)
Q Consensus 169 aL~aL~~L~~~~~ 181 (315)
.+..+..+-+-.+
T Consensus 260 Ildll~dllrik~ 272 (371)
T PF14664_consen 260 ILDLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHHHCCCC
Confidence 9999999876555
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.17 Score=48.95 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=107.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH--H--HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR--S--QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~--~--Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
++.|-+-|..++..|+..||+-||.+..|... + -..|+..|+++.++..+.. .+.+|...|+-.|+++.+- +.+
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrialf-paa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIALF-PAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhc-HHH
Confidence 44555667788999999999999999887652 1 2345678999999999876 4789999999999999885 444
Q ss_pred HHHHHHcCcHHHH--HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHH
Q 021251 100 IEAFRLANGYAAL--RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLEL 176 (315)
Q Consensus 100 ~~~f~~~gGl~~L--~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L 176 (315)
...+....-+..+ +.+--.-+.-.|.+...+|-.+.+-.+.......+.|++..|..=++. .|.-++..++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 4444444433322 222222345567777888888887777766777778888888776665 6766777777666666
Q ss_pred H
Q 021251 177 A 177 (315)
Q Consensus 177 ~ 177 (315)
+
T Consensus 242 a 242 (524)
T KOG4413|consen 242 A 242 (524)
T ss_pred H
Confidence 4
No 95
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.26 Score=51.78 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=34.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.++.+.|..++--.+.+++.++..++...+.. -..++.+|...|..+|-+|+..|..++...
T Consensus 306 ~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 306 IFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred hhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence 33444555555555555555554443322211 123566777777777777777777776554
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.92 E-value=0.3 Score=42.74 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~ 114 (315)
|+.||..+.-++|-++...|..-+ ..++.+...|. |+++.||..|+..|+.|+.+.-- .+ +...+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~-D~~~~VR~~al~~Ls~Li~~d~i---k~-k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLR-DEDPLVRKTALLVLSHLILEDMI---KV-KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHcCce---ee-hhhhhHHHHH
Confidence 578999999999999998876533 24778888887 46899999999999999875321 11 1123367788
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCC--------CChHHHHHHHHHHHHHHcC
Q 021251 115 ALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASS--------EDPDVREAALRGLLELARE 179 (315)
Q Consensus 115 lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s--------~d~~v~e~aL~aL~~L~~~ 179 (315)
++..+++.++.-|..++..+... ++. .+ ...+++.+..+-.. .+.+-+......|....+.
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~---~i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNPN---II-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccch---HH-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 88999999999999999999865 222 22 22233333322221 2344556666666666553
No 97
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.04 Score=57.22 Aligned_cols=149 Identities=22% Similarity=0.277 Sum_probs=107.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH-HHH--
Q 021251 29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA-FRL-- 105 (315)
Q Consensus 29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~-f~~-- 105 (315)
+.|...++-||...--+|.|++..- ..|.. -.++|.|.++|.+ ++.....-|+.||+-+|.......+. +..
T Consensus 97 ~~lgd~~~lIr~tvGivITTI~s~~-~~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp 171 (885)
T KOG2023|consen 97 HGLGDASPLIRATVGIVITTIASTG-GLQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRP 171 (885)
T ss_pred hhccCchHHHHhhhhheeeeeeccc-ccccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence 3444456678888888888887642 23332 4679999999987 57788899999999999775443322 111
Q ss_pred -cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251 106 -ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 106 -~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
.--++-+.++.+++++++|..|+..+..+.-..+. ...... .+++.+-.+-..+++.||..+.++|.-|..-.+..
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 12467778888999999999999999876643222 222222 57888888888899999999999999998877766
Q ss_pred h
Q 021251 184 S 184 (315)
Q Consensus 184 ~ 184 (315)
.
T Consensus 250 l 250 (885)
T KOG2023|consen 250 L 250 (885)
T ss_pred c
Confidence 5
No 98
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.11 Score=54.15 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=110.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhc---CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~-vle~---G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
+|.|..+|.+++....+-|..++..++.+.+..-+. +... -.+|++++.+++ +++.+|..|+.++-..+-....+
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHH
Confidence 455667888999999999999999999987654332 2211 368999999988 48899999999998876655433
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-hc-CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD-KL-GFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
.-.-++ .=+..+..+-..+++.+|...|.++.+|+.-.++ .+. .+ ++|+.++......|..+--.|....+.++
T Consensus 209 l~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 209 LYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 211111 1233444445667899999999999999975432 222 22 78888888888888888888888888888
Q ss_pred cCC
Q 021251 178 REK 180 (315)
Q Consensus 178 ~~~ 180 (315)
...
T Consensus 285 eqp 287 (885)
T KOG2023|consen 285 EQP 287 (885)
T ss_pred cCc
Confidence 775
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.71 E-value=0.12 Score=44.20 Aligned_cols=118 Identities=11% Similarity=0.082 Sum_probs=98.9
Q ss_pred CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 021251 64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS 143 (315)
Q Consensus 64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~ 143 (315)
+-+..|+.-+...++.+.+...+--|.|.+-+ +.......+.+.+.+.+..|...+.++..-+...|.++|- ++.+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence 34667788787778889999999999998865 5567788899999999999999999999999999999986 467778
Q ss_pred HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251 144 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 144 ~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
.+.+.+.++.++..+.++.....-.++.++.-|.-.....
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~ 133 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE 133 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch
Confidence 8999999999999999988888778887887777666433
No 100
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.62 E-value=0.5 Score=45.57 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=116.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhc-----CCHHHHHHcccCCCC---------HHHHHHHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEA-----NGLEPLLSNFASDPD---------VTVRTKALGA 88 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq-NNp~~Q~~vle~-----G~l~~Ll~LL~sd~~---------~~vr~kAl~A 88 (315)
+..+.+.|.+....+...+..++..++. +.......|+.. ..++.|+..=..+.. ..+|..++.-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888988888899999999999999 887887888866 345555544221111 2788887754
Q ss_pred -hhhhhcCCchhHHHHHHcC-cHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCCc---chHHHHhcCchHHHHHhhCCCC
Q 021251 89 -ISSLIRHNKPGIEAFRLAN-GYAALRDALGSESVKFQRKALNLIQ-YLLNENAS---DCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 89 -LS~LiR~~~~~~~~f~~~g-Gl~~L~~lL~s~~~kl~~kA~~lLs-~Ll~~~~~---~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
||-+.-+++.....++..+ -+..+.+.|..++..+-...+..+. +++.+..- .+..+....++.+|+.+...++
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 4444444455566666554 4677888888888888888888887 56654321 2344556678999999888877
Q ss_pred h----HHHHHHHHHHHHHHcCCcchh
Q 021251 163 P----DVREAALRGLLELAREKADGS 184 (315)
Q Consensus 163 ~----~v~e~aL~aL~~L~~~~~~~~ 184 (315)
. .+.+.+-..|..++++...++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCccc
Confidence 7 899999999999998765443
No 101
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.24 Score=54.18 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=98.5
Q ss_pred hHHHHHhhc-CCCChhHHH----HcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251 2 LDELQEHVE-SIDMANDLH----SIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 75 (315)
Q Consensus 2 Le~L~dLve-niDnA~d~~----~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s 75 (315)
|+.|..++. |.|.|.-|- -+|-++.++.+|++ .++.|+..|..+|..+..|- .|-+.+.+.|.+..|+.+|-+
T Consensus 1746 LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS 1824 (2235)
T KOG1789|consen 1746 LTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHS 1824 (2235)
T ss_pred HHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhc
Confidence 445666554 457776654 38889999999976 78999999999998888754 577889999999999999876
Q ss_pred CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhc
Q 021251 76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL-~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
- +..|..++..|-.|..+ +...+.-.++||+..+..++ .+++...+..|+.++..|...
T Consensus 1825 ~--PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1825 Q--PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred C--hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 4 45666555444444433 34445666889998887765 456789999999999998754
No 102
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.069 Score=57.49 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=64.4
Q ss_pred HHHHhhcC-CCChhHHHHcCChHHHH-------------------------HhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q 021251 4 ELQEHVES-IDMANDLHSIGGLAPLL-------------------------GYLKNSHANIRAKAGEVVTTIVQNNPRSQ 57 (315)
Q Consensus 4 ~L~dLven-iDnA~d~~~~Ggl~~Ll-------------------------~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q 57 (315)
.|.-..++ .+|++...+-|++..+- ..++|+---+|++|||+++..+.-+=+.+
T Consensus 418 Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~ 497 (1010)
T KOG1991|consen 418 ILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP 497 (1010)
T ss_pred HHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh
Confidence 34444455 56666666666655432 23344456799999999999994322222
Q ss_pred HHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 58 QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 58 ~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
..+ ..++..-.+.|.+|.+..||+.|+.||.+++++.+.+-.
T Consensus 498 ~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 498 NNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 222 234666777777677889999999999999999886533
No 103
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.25 Score=52.38 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=95.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
|-+-++|++.++-||..|+.|.-.+..-.|..-+.|+ ++.-++|.+ .+..|-...+.-+-.||..++.....|.
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr 218 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFR 218 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHH
Confidence 3344667777777777777777777666665544333 333444432 3445555555555555555555555554
Q ss_pred HcCcHHHHHHhh----cC-----------CCHHHHHHHHHHHHHHhhcCCcchHHHH-----------------------
Q 021251 105 LANGYAALRDAL----GS-----------ESVKFQRKALNLIQYLLNENASDCSVVD----------------------- 146 (315)
Q Consensus 105 ~~gGl~~L~~lL----~s-----------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~----------------------- 146 (315)
+ -++-++..| .+ .++=+|.+++.+|+-|-++++...+.+.
T Consensus 219 ~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE 296 (866)
T KOG1062|consen 219 D--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYE 296 (866)
T ss_pred H--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 3 222222222 21 3577888888877777665544322111
Q ss_pred ----------hcC----chHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch-------hhhhhhhhHHHHHHH
Q 021251 147 ----------KLG----FPRLMLHLASSEDPDVREAALRGLLELAREKADG-------SAIKLAEDNEKLKQL 198 (315)
Q Consensus 147 ----------~~g----~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~-------~~~c~~~~~~~L~~~ 198 (315)
+.| .+..|.++|.+.|.++|--+|++|...++..+.. +.+|+++|+..++..
T Consensus 297 ~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr 369 (866)
T KOG1062|consen 297 CVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR 369 (866)
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 011 2445566677777778877888888777776633 477888888876544
No 104
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.46 E-value=0.63 Score=45.80 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=112.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL 105 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 105 (315)
+..++-+++.+||+.|-.++..+..+. ..-+.+.+.+.---++.-|..+ +....|..|+--+..++.-... .+. +.
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~-~~ 106 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE-IP 106 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc-CC
Confidence 333454555999999999999999864 4556778877555555556654 4567888999888887765332 222 24
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 106 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 106 ~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.|-+..|+.+..+.+.+++.-|...|..|+-.+| +.+...|.++.|++.+..+...+.+..+.++..+..+-.
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 4667788888888999999999999999987655 478899999999998887766788999999999887754
No 105
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.42 E-value=0.084 Score=50.00 Aligned_cols=111 Identities=22% Similarity=0.174 Sum_probs=84.3
Q ss_pred CChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 22 GGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 22 Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
+.+..|| ..+++.++.||+.|..++|-++-=+.+.-. + .++.+++.+..+ +..++..|+-+|.-++..|....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~---~--~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK---E--HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH---H--HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 5566666 788999999999999999988876654322 2 367788888665 88999999999999887665321
Q ss_pred -HHHHH-------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251 101 -EAFRL-------ANGYAALRDALGSESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 101 -~~f~~-------~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~ 138 (315)
..... ..-+.++...|.+.+.+++..|+..+..|+-.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 11111 234567888889999999999999999988654
No 106
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.40 E-value=2.4 Score=40.63 Aligned_cols=150 Identities=20% Similarity=0.135 Sum_probs=84.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHH-hh--CCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhc--CCc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTI-VQ--NNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIR--HNK 97 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~Lgti-aq--NNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR--~~~ 97 (315)
+..+++.++.+..+=+..|+.+++-+ .| ..... +.+++. ..|.|.+.+... ....+|..++.||+-++- ...
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 44555566555555566777877755 33 12333 344443 567777776643 345677777777775432 211
Q ss_pred -hhHHHHHHcCcHHH--HHHhhcC----------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH
Q 021251 98 -PGIEAFRLANGYAA--LRDALGS----------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD 164 (315)
Q Consensus 98 -~~~~~f~~~gGl~~--L~~lL~s----------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~ 164 (315)
....... ..+.. ....+++ ++..+...|+...+-|+..-+...-.-.-...++.|+.+|.++|.+
T Consensus 166 ~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~ 243 (309)
T PF05004_consen 166 EEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVD 243 (309)
T ss_pred hhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 1111100 11121 1111121 2357888888888878765443211111124689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021251 165 VREAALRGLLELA 177 (315)
Q Consensus 165 v~e~aL~aL~~L~ 177 (315)
||-.|-.+|.-|.
T Consensus 244 VRiAAGEaiAll~ 256 (309)
T PF05004_consen 244 VRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 9988876665553
No 107
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.38 E-value=0.27 Score=48.47 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=79.8
Q ss_pred CChHHHH-HhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc-CC--CCHHHHHHHHHHhhhhhc
Q 021251 22 GGLAPLL-GYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SD--PDVTVRTKALGAISSLIR 94 (315)
Q Consensus 22 Ggl~~Ll-~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~-sd--~~~~vr~kAl~ALS~LiR 94 (315)
+.++..+ ..+++. .+.|=..|+.+++++..|.|.+...+.+.|..+.++..+. .+ ++.++....-.+|+.||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 4444444 455553 5789999999999999999999999999999999999987 43 456777777788888888
Q ss_pred CCchhHHHHHHcCcHHHHHHhhcCCC
Q 021251 95 HNKPGIEAFRLANGYAALRDALGSES 120 (315)
Q Consensus 95 ~~~~~~~~f~~~gGl~~L~~lL~s~~ 120 (315)
| ..+.+.|.+.+.+..+.+++.+++
T Consensus 185 N-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 185 N-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred C-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 7 556789999999999999998865
No 108
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.22 E-value=0.57 Score=45.48 Aligned_cols=183 Identities=15% Similarity=0.247 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc---HH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG---YA 110 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG---l~ 110 (315)
+++++--.+-.+|..++.. +.+-..++....+..+.+.+.. ++-++...|+..+..+...|+.....|+..+- +.
T Consensus 135 ~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~ 212 (335)
T PF08569_consen 135 ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQ 212 (335)
T ss_dssp GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHH
T ss_pred cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4666777788888888885 5566788888888888888775 57899999999999977777777777775442 45
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH----HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chh
Q 021251 111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSV----VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGS 184 (315)
Q Consensus 111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~----l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~ 184 (315)
....+|.+++--.|+.++-+|+.|+.. +.+..+ +.+..-++.++.+|++.+..+|-.|...+--.+.... +.+
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 678889999999999999999999964 444433 3344678899999999999999999998877765533 223
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 021251 185 AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV 224 (315)
Q Consensus 185 ~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~ 224 (315)
..-+..-...|...|. +... +..|-+.+.+|++++
T Consensus 292 ~~iL~~Nr~kLl~fl~----~f~~-~~~~D~qf~~EK~~l 326 (335)
T PF08569_consen 292 VDILIKNREKLLRFLK----DFHT-DRTDDEQFEDEKAYL 326 (335)
T ss_dssp HHHHHHTHHHHHHHHH----TTTT-T--S-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hCCC-CCCccccHHHHHHHH
Confidence 2221222233333322 2221 231337788998877
No 109
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.20 E-value=0.63 Score=50.44 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHh---------cCCHHHHHHcccCCCCHHHH--HHHHHHh-hhh
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVME---------ANGLEPLLSNFASDPDVTVR--TKALGAI-SSL 92 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle---------~G~l~~Ll~LL~sd~~~~vr--~kAl~AL-S~L 92 (315)
.++..+++++++|+..|+.++|.++-.| ++.--.+++ +=.+-.|...+.+.+....+ +.-+|++ ..=
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~ 940 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKH 940 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Confidence 5568999999999999999999998743 332111111 01111222222221111010 1122322 122
Q ss_pred hcCCchhHHHHH-H----------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251 93 IRHNKPGIEAFR-L----------ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 93 iR~~~~~~~~f~-~----------~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
|.+.+.+...++ + .--++.|...+.|+.+..+.-++.++.+.+...+.-.+.+.+ ..+.....+++.+
T Consensus 941 cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp 1019 (1233)
T KOG1824|consen 941 CECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP 1019 (1233)
T ss_pred cccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC
Confidence 222222222221 1 123566777788888888888888888888766655444443 4677788899999
Q ss_pred ChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251 162 DPDVREAALRGLLELAREKADGSAIK 187 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~~~~~c 187 (315)
|..+|..|+.++...+...+..++..
T Consensus 1020 Dl~VrrvaLvv~nSaahNKpslIrDl 1045 (1233)
T KOG1824|consen 1020 DLEVRRVALVVLNSAAHNKPSLIRDL 1045 (1233)
T ss_pred chhHHHHHHHHHHHHHccCHhHHHHH
Confidence 99999999999999998888766444
No 110
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.13 E-value=0.05 Score=46.32 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=63.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
++..|.+-|++.++.++.+|..++.++++|. +.++..+...+.+..|++++....+..|+.|++..|-+-...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 5667777888999999999999999999994 778888999999999999998777889999999888776543
No 111
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.21 Score=52.63 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=114.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.++.++++....+-+++...=--+.+.++..|.- ..+++..+++=.. ++++.+|..|+...+++--. .
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~-d~np~iR~lAlrtm~~l~v~------~ 117 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCE-DPNPLIRALALRTMGCLRVD------K 117 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCC-CCCHHHHHHHhhceeeEeeh------H
Confidence 5777888888888888888888888888888853 3345556666543 57899999999999886422 2
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+. ..-...|..+++++++-+|..|+..+..+-. .+.+...+.|++..|-.++...++.+...|+.+|..++..++
T Consensus 118 i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 118 IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 22 2356789999999999999999998888864 456688899999999999998899999999999999998876
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.06 E-value=0.23 Score=39.50 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC
Q 021251 39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 118 (315)
Q Consensus 39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s 118 (315)
|..+...|+.++...++.-...++ -++++++..+. |++..||..|.-||-++++......-.+ -..-+..|.+++..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 555666676665544433222222 37899999986 5799999999999999998765433222 13578899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 021251 119 ESVKFQRKALNLIQYLL 135 (315)
Q Consensus 119 ~~~kl~~kA~~lLs~Ll 135 (315)
.++.+|.-| .+|-.|+
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998876 4455544
No 113
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.97 E-value=0.099 Score=39.58 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
...|.|++|+++.. +.-...+.+.+.++.++++..+++..++|-.|+|+|+-+.+..
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 45799999999984 5555666678999999999988888899999999999888753
No 114
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.78 Score=48.62 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=86.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHH-------------HHhh
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL-------------GAIS 90 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl-------------~ALS 90 (315)
+|.+..+|++.|+-||..|.-+|.+|-+|... ++. ++=+.+-..|..+.|+..+++|+ |+.+
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~ 210 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LIP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLS 210 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hcC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHh
Confidence 56666899999999999999999999987211 111 11111222233334444444433 4444
Q ss_pred hhhcCC---chhHHHHHH-------------cCcHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhhc
Q 021251 91 SLIRHN---KPGIEAFRL-------------ANGYAALRDALGSE-----------------SVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 91 ~LiR~~---~~~~~~f~~-------------~gGl~~L~~lL~s~-----------------~~kl~~kA~~lLs~Ll~~ 137 (315)
|+-.-. +..+..+++ .--+..+..+|++. ++.....|+..+-.|+..
T Consensus 211 ~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 211 NIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVK 290 (948)
T ss_pred hHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHh
Confidence 442211 111111111 11234556666543 455556666666666543
Q ss_pred CCcchH------HHHh---------cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 138 NASDCS------VVDK---------LGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 138 ~~~~~~------~l~~---------~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.+.+.. .+.+ .|++-.++.+|.++|.++|.+++.....|+++..
T Consensus 291 esdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 291 ESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred ccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 333221 1211 1566667788899999999999999999987753
No 115
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=94.83 E-value=0.42 Score=48.11 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=88.0
Q ss_pred CHHHHHHHHhcCCHHHHHHcc---------cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC----
Q 021251 53 NPRSQQLVMEANGLEPLLSNF---------ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE---- 119 (315)
Q Consensus 53 Np~~Q~~vle~G~l~~Ll~LL---------~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~---- 119 (315)
.+...+.++...++..|+++- ..+.+..+...|+-+|+|++-+++.+++.|.+.|+...++..|+..
T Consensus 11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 344445555555666666664 3446789999999999999999999999999999999999999865
Q ss_pred -CH---HHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhCC-----------------CChHHHHHHHHHHHHHH
Q 021251 120 -SV---KFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASS-----------------EDPDVREAALRGLLELA 177 (315)
Q Consensus 120 -~~---kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g~v~~Lv~LL~s-----------------~d~~v~e~aL~aL~~L~ 177 (315)
+. =+-.|.+|++.++. +..+..++ +.+.+..++..|.. .+....-.+|.++.++.
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit 167 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT 167 (446)
T ss_pred CChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence 33 34455555555443 34554444 44777766665531 13345566788888887
Q ss_pred cCCcchh
Q 021251 178 REKADGS 184 (315)
Q Consensus 178 ~~~~~~~ 184 (315)
.+.+...
T Consensus 168 ~~~~~~~ 174 (446)
T PF10165_consen 168 LHYPKSV 174 (446)
T ss_pred hccCccc
Confidence 7776543
No 116
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=0.33 Score=53.41 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=114.3
Q ss_pred cCChHHHH-HhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251 21 IGGLAPLL-GYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 21 ~Ggl~~Ll-~lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
+|-+.|++ ...++ .++++|+.|.-++|.+.-=..+ |.+ -.++.|+..+...+++.+|.+++-|++-++--
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 45666766 44533 5899999999999966532211 122 24899999999888999999999999998766
Q ss_pred CchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 96 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 96 ~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
++.-.+.+- +.|.+-|+..+..+|+.|...|++|... +.+.-.|.+..+..+|..++..+++-|=.....
T Consensus 992 fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 992 FPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred cccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 665444432 3477788999999999999999999864 355667999999999999999999999988888
Q ss_pred HHcCCc
Q 021251 176 LAREKA 181 (315)
Q Consensus 176 L~~~~~ 181 (315)
|.+.+.
T Consensus 1062 ls~k~n 1067 (1251)
T KOG0414|consen 1062 LSSKGN 1067 (1251)
T ss_pred hhhccc
Confidence 887774
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.81 E-value=0.33 Score=46.13 Aligned_cols=136 Identities=22% Similarity=0.231 Sum_probs=101.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
-.++.++.+|.+++..+|..|++.++.+... -+++.|..++.. .+..+|..|++||+.+- .+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d-~~~~vr~~a~~aLg~~~--~~---- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSD-EDPRVRDAAADALGELG--DP---- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcC-CCHHHHHHHHHHHHccC--Ch----
Confidence 3688899999999999999999997665532 257889999875 68899999999888862 22
Q ss_pred HHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-----------Cc--------------chH----HHH---hc
Q 021251 102 AFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNEN-----------AS--------------DCS----VVD---KL 148 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~-----------~~--------------~~~----~l~---~~ 148 (315)
-.++.|+.+|. +.+..++..++++|..+-... .. .+. .+. +.
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~ 179 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP 179 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence 35666778887 578899999999888764432 00 011 111 22
Q ss_pred CchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 149 GFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 149 g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
..++.+..++...+..+|..|..+|..+..+.
T Consensus 180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 180 EAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 45677888888888899999999999988875
No 118
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.79 E-value=0.6 Score=50.56 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=85.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.|..|.+-..+.....|--.+.|||.++-++|+. .+|+|=..+.+ +....|.-++.|+--.+...++..+.
T Consensus 933 IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~ 1003 (1233)
T KOG1824|consen 933 IWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDP 1003 (1233)
T ss_pred HHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCH
Confidence 3555665556677788999999999999999975 56777777665 56789999999998888877776666
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~ 140 (315)
.++ .-+.-...+++.+|.++++.|+.++...+.+.|.
T Consensus 1004 ~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1004 LLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred HHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 554 4455677788999999999999999998876665
No 119
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.79 E-value=1.6 Score=43.33 Aligned_cols=114 Identities=20% Similarity=0.175 Sum_probs=83.7
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-------------IEAFRLANGYAALRDALGSESVKFQRKALNLI 131 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-------------~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lL 131 (315)
.+..|+.+|.+ ..+...|.-++.-++...+.. .+.|. .--++.|++..+..+...|..-+.+|
T Consensus 272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 46678888765 566777888887777763321 12222 23567777777776766888899999
Q ss_pred HHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 132 QYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 132 s~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
++++.+-|. ..+... .++|-|++-|..+|.+++..++.+|..+..+.++..
T Consensus 348 s~ll~~vP~--~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 348 SHLLKNVPK--SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHhhCCH--HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 999987663 333322 588899999999999999999999999999996655
No 120
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.31 Score=50.79 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=95.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH----HHH-HHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP----RSQ-QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp----~~Q-~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
+...++.|..++..||..|..++....+-.| ..+ +.=+.-.++..+-..+. |-+..||+.|.-+|+.+-.-...
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHh-cCceeeeehHHHHhchHHHhHHH
Confidence 4455677888889999998665544433331 001 11112245666777754 45677888877777765322111
Q ss_pred h----------------------HHHHHHcC----------------------------cHHHHHHhhcCCCHHHHHHHH
Q 021251 99 G----------------------IEAFRLAN----------------------------GYAALRDALGSESVKFQRKAL 128 (315)
Q Consensus 99 ~----------------------~~~f~~~g----------------------------Gl~~L~~lL~s~~~kl~~kA~ 128 (315)
. -+..+..| ...+++..|..+=..+|+.|+
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 1 01122223 334566666666688999999
Q ss_pred HHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 129 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 129 ~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
..+..|+.+.|..... .+..|+.+++.+..++|.+|+.+|..|+.+-
T Consensus 395 ~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 395 ASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999877765433 3456788888888888988888888887663
No 121
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.75 E-value=0.32 Score=42.19 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=79.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCHHHHHHHHHHhhhh---hcCCch
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISSL---IRHNKP 98 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~~vr~kAl~ALS~L---iR~~~~ 98 (315)
+.-+..+|++.++.-||.++.+++.++++++. +.+.+++ .+..|+.+|+...+..++..|+.+++.| +++++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34566899999999999999999999998742 4555553 6899999999877788888888888875 455555
Q ss_pred hHHHHHHcCc---HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251 99 GIEAFRLANG---YAALRDALGSESVKFQRKALNLIQYLLNENASD 141 (315)
Q Consensus 99 ~~~~f~~~gG---l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~ 141 (315)
-...+..... ++.++.+++. ......++.+|..++..+|..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 4444433221 2233333332 567777788888887766554
No 122
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.74 E-value=0.38 Score=41.71 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=72.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCCHHHHHHcccC--------CCCHHHHHHHHHHhhhhhc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEANGLEPLLSNFAS--------DPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq-NNp~~Q~~vle~G~l~~Ll~LL~s--------d~~~~vr~kAl~ALS~LiR 94 (315)
-..+++.|++..... ....-|...-. ++..--+.|++.||+..|+.+|.. ..+......++.+|-.++-
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 344666676544332 22222222222 333445678899999999998853 2455777888888888774
Q ss_pred CCchhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251 95 HNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLL 135 (315)
Q Consensus 95 ~~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll 135 (315)
+ ..+...++. .+++..|+.+|.+++.+++.-|+.+|+.+|
T Consensus 146 ~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 T-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4 566666664 678999999999999999999999999886
No 123
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.71 E-value=0.16 Score=43.85 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=99.9
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 23 GLAPLLGYLK--NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 23 gl~~Ll~lL~--s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
.+..++..|. ...+++|..|.-+++.+- +..++.+.+. +...+.-+-.+.+..-...++.+++.+-..-+..-
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 4566777665 478889999999999884 3444544443 33333332222233467889999999988876655
Q ss_pred HHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChH-HHHHHHHHHH
Q 021251 101 EAFR-LANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPD-VREAALRGLL 174 (315)
Q Consensus 101 ~~f~-~~gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~-v~e~aL~aL~ 174 (315)
..++ ..|-.+.+...+. +++.+++..++.+|++=+. ...++.++...+++-|-++++. ++.. ++..|+-.|.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 4444 5566788888888 7899999999999988775 4566677777788899999964 4454 6777665554
No 124
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.21 Score=52.69 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=102.7
Q ss_pred cCChHHHHHhhcC----CCH-HHHHHHHHHHHHHhhC-CHHHHHHHHhc-CCHHHHH-HcccCCCCHHHHHHHHHHhhhh
Q 021251 21 IGGLAPLLGYLKN----SHA-NIRAKAGEVVTTIVQN-NPRSQQLVMEA-NGLEPLL-SNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s----~~~-~vR~~Aa~~LgtiaqN-Np~~Q~~vle~-G~l~~Ll-~LL~sd~~~~vr~kAl~ALS~L 92 (315)
.+.||-|+..|.+ +.+ .+|..++.+||.+|+. .|+. ..-.. .++-.++ .+.+.+++..||-.|+.||-+-
T Consensus 124 ~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pev--l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~ns 201 (859)
T KOG1241|consen 124 QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEV--LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNS 201 (859)
T ss_pred hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHH--HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHH
Confidence 5679999877643 334 5999999999999997 4542 11122 3443333 3455667889999999999874
Q ss_pred hcCCchhHHHHH---H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHH
Q 021251 93 IRHNKPGIEAFR---L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREA 168 (315)
Q Consensus 93 iR~~~~~~~~f~---~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~ 168 (315)
.- .....|- + .--.++..+..+++|.+++.+|...|..|.+-+-..-..-....+...-+.-+++++..+.-.
T Consensus 202 Le---f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 202 LE---FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HH---HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 31 1111222 1 224567778889999999999999999988754443333334445566666777888888888
Q ss_pred HHHHHHHHHcC
Q 021251 169 ALRGLLELARE 179 (315)
Q Consensus 169 aL~aL~~L~~~ 179 (315)
+...-++++..
T Consensus 279 aiEFWsticeE 289 (859)
T KOG1241|consen 279 AIEFWSTICEE 289 (859)
T ss_pred HHHHHHHHHHH
Confidence 87766666543
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=3.4 Score=40.27 Aligned_cols=208 Identities=18% Similarity=0.190 Sum_probs=138.8
Q ss_pred HHHhhcCCC-Chh----HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHH--HHcccCCC
Q 021251 5 LQEHVESID-MAN----DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL--LSNFASDP 77 (315)
Q Consensus 5 L~dLveniD-nA~----d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~L--l~LL~sd~ 77 (315)
+.-++||-| ||. .+++.|.++.++.|+-.++.+|-..|...|..++- -|..-+.+++...+..+ .++-.. .
T Consensus 106 igcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaak-c 183 (524)
T KOG4413|consen 106 IGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAK-C 183 (524)
T ss_pred hhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhh-h
Confidence 445677777 443 34577888999999999999999999999999886 56677778887766544 333222 3
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH 156 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~ 156 (315)
+.-+|+..+.-|--+..-++......-+.|-+..|..=|+. .|.-++..+..+...|+. ....++.+.+.|+|..+..
T Consensus 184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicn 262 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICN 262 (524)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHH
Confidence 45666666555444443344555566667777877777877 788889999999999885 4567888899999999999
Q ss_pred hhCCCChH--HHHHHHHHHHHHHcCCc----chhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 021251 157 LASSEDPD--VREAALRGLLELAREKA----DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREE 220 (315)
Q Consensus 157 LL~s~d~~--v~e~aL~aL~~L~~~~~----~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE 220 (315)
++...+.+ -.-.++...+.+-..-. -....| ..+...++..++.|+.-+++-.++.-+-
T Consensus 263 IIsGadsdPfekfralmgfgkffgkeaimdvseeaic-----ealiiaidgsfEmiEmnDpdaieaAiDa 327 (524)
T KOG4413|consen 263 IISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAIC-----EALIIAIDGSFEMIEMNDPDAIEAAIDA 327 (524)
T ss_pred HhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHH-----HHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence 99874433 22334444443332221 001223 5667778888888875555554444443
No 126
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.78 Score=48.64 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=64.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
.-=+..++.+|.++++.++-.|+..|-++. |+|..-.. +...++.++...++..++.-.+--|+.+-..+....
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il 315 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL 315 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH
Confidence 334555666777777777777777666655 34544222 233455555544455555555555555542222221
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~ 138 (315)
.|-+--++++|.++|-.++.|+..+.-.|..+.
T Consensus 316 -----~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 316 -----QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred -----HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 133344778899999999999999999988653
No 127
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.19 E-value=0.16 Score=51.24 Aligned_cols=173 Identities=20% Similarity=0.192 Sum_probs=97.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh----CCHH---HHHHHHhcCCHHHHHHccc--CCCCHHHHHHHHHHhhhhhcC
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQ----NNPR---SQQLVMEANGLEPLLSNFA--SDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq----NNp~---~Q~~vle~G~l~~Ll~LL~--sd~~~~vr~kAl~ALS~LiR~ 95 (315)
..++..|.+..-..|..|+|.+|+|.. +-|. .++.+.. -.+..+|..-. +.....|+.+|+.||.++..-
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 344455555566799999999998753 4343 3333332 23455555522 123468999999999997532
Q ss_pred Cch----hHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC----chHHHHHhhCC-CChHH
Q 021251 96 NKP----GIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLG----FPRLMLHLASS-EDPDV 165 (315)
Q Consensus 96 ~~~----~~~~f~~~gGl~~L~~l-L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g----~v~~Lv~LL~s-~d~~v 165 (315)
-.+ +.... ..+....+... +-....++|-+||.++++|..+... .+.++. +.+.|..|+.. .+-.+
T Consensus 515 lq~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~---~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 515 LQPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL---PLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhhcCccc---cccCCCchHHHHHHHHHHHHHhccceE
Confidence 111 11111 11222222211 2224589999999999999975321 133332 34556666655 67778
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhcc
Q 021251 166 REAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGIS 207 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~ 207 (315)
|-.|+.+|..-.+--..+. +=-+-+..++.-.++.++
T Consensus 591 Ri~AA~aL~vp~~re~~~d-----~~~Lsw~~lv~aLi~s~~ 627 (728)
T KOG4535|consen 591 RIRAAAALSVPGKREQYGD-----QYALSWNALVTALQKSED 627 (728)
T ss_pred eehhhhhhcCCCCcccchh-----HHhHHHHHHHHHHHHHHH
Confidence 8888888876654443322 112344555555555544
No 128
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=94.07 E-value=1.4 Score=42.41 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=95.4
Q ss_pred HHHHHHcccCC---CCHHHHHHHHHHhhhhhcCCchhHHHHHH---------c--CcHHHHHHhhc------CCCHHHHH
Q 021251 66 LEPLLSNFASD---PDVTVRTKALGAISSLIRHNKPGIEAFRL---------A--NGYAALRDALG------SESVKFQR 125 (315)
Q Consensus 66 l~~Ll~LL~sd---~~~~vr~kAl~ALS~LiR~~~~~~~~f~~---------~--gGl~~L~~lL~------s~~~kl~~ 125 (315)
+..|+.+.-.. ..-.+|..|+|++-|.+.+|+.++..|++ . ....-|...|- +.|+----
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 44455543333 36789999999999999999999999976 1 11112444444 23443345
Q ss_pred HHHHHHHHHhhcCCcchHHHHhc------------CchHHHHHhhCC-----CChHHHHHHHHHHHHHHcCCcchhhhhh
Q 021251 126 KALNLIQYLLNENASDCSVVDKL------------GFPRLMLHLASS-----EDPDVREAALRGLLELAREKADGSAIKL 188 (315)
Q Consensus 126 kA~~lLs~Ll~~~~~~~~~l~~~------------g~v~~Lv~LL~s-----~d~~v~e~aL~aL~~L~~~~~~~~~~c~ 188 (315)
.|+.++.+++.+++..++.+..- -.++++..+|.. .+..++---|..|..-.-+++..+.+-
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~F- 194 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDF- 194 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHH-
Confidence 68899999999888777654322 356667776654 356677777888888888888777544
Q ss_pred hhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhC
Q 021251 189 AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN 233 (315)
Q Consensus 189 ~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~ 233 (315)
-+....+..+++. ..+-+.+| .--..+|--|+-+||.
T Consensus 195 L~~~s~l~~Li~~----~~~~~~~~----~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 195 LSEGSNLQSLIEF----SNQSSSED----VLVQGLCAFLLGICYE 231 (312)
T ss_dssp HCSTTHHHHHHHH----HS--TCCC----HHHHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHH----hhcCCCCc----chHHHHHHHHHHHHHH
Confidence 3333444455554 22212222 2225688999999986
No 129
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.98 E-value=0.15 Score=43.40 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=61.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR 94 (315)
++..|.+-|++.++.++-+|..++-++++|. +.++..|...+.+.-|++++.. .++..|+.+.+..|-.-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5777888889999999999999999999996 7788999999999999999853 3578999998877765543
No 130
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.96 E-value=0.51 Score=39.41 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=75.3
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhCC-
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS- 160 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~Lv~LL~s- 160 (315)
..++..|+.+++..+.+.. .++..|..-|++.++.++..|+.+|-.++.+... ....+....++..|+.++..
T Consensus 18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 6677888999987744332 3567788889999999999999999999987644 55677777888889999975
Q ss_pred --CChHHHHHHHHHHHHHHcCCc
Q 021251 161 --EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 161 --~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.+..++++++..+........
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 93 PKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Confidence 578899999999988776554
No 131
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=4.9 Score=40.47 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=119.9
Q ss_pred hHHHHcCChHHHHH-hh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc----CC---C-CHHHHHHH
Q 021251 16 NDLHSIGGLAPLLG-YL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA----SD---P-DVTVRTKA 85 (315)
Q Consensus 16 ~d~~~~Ggl~~Ll~-lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~----sd---~-~~~vr~kA 85 (315)
...++.|.+.-|+. +- +.+-...+.+|..+++.+-||+.+.+..+-..+|+..|++-+. ++ . ..+.-.+.
T Consensus 218 ~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNL 297 (536)
T KOG2734|consen 218 TEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENL 297 (536)
T ss_pred HHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHH
Confidence 34445555555554 32 2366778999999999999999888888888899999998874 22 1 23566788
Q ss_pred HHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--cchHHHHhcCchHHHHHhhC-C--
Q 021251 86 LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--SDCSVVDKLGFPRLMLHLAS-S-- 160 (315)
Q Consensus 86 l~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~--~~~~~l~~~g~v~~Lv~LL~-s-- 160 (315)
.-+||++++. +.+...|++..|+..+.-.++. ....+--|..+|-+.+.+.+ ..+..+++.+..+++..+.. .
T Consensus 298 FdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~ 375 (536)
T KOG2734|consen 298 FDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPL 375 (536)
T ss_pred HHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCcc
Confidence 8999999987 6678999999999988777776 45556667778888887655 45678888877887777664 1
Q ss_pred -------CChHHHHHHHHHHHHHHcCC
Q 021251 161 -------EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 161 -------~d~~v~e~aL~aL~~L~~~~ 180 (315)
.....-|++...|+++-..+
T Consensus 376 k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 376 KRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 22446688888888876654
No 132
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=0.35 Score=50.45 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=97.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHH-------------HHHH------------------
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE-------------PLLS------------------ 71 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~-------------~Ll~------------------ 71 (315)
++-.+.+.++.-.-.||..|++++|.+-|-..++-.+-+...++. .|..
T Consensus 282 aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee 361 (823)
T KOG2259|consen 282 AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE 361 (823)
T ss_pred HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh
Confidence 344555566666778999999999988776555544444333333 2221
Q ss_pred -------------------cccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 021251 72 -------------------NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQ 132 (315)
Q Consensus 72 -------------------LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs 132 (315)
=|. |.=.+||+.|+++++.|+.+.+.-. .-.+..|++.+..+...+|.+|.++|.
T Consensus 362 ~d~~~~siI~sGACGA~VhGlE-DEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~ 435 (823)
T KOG2259|consen 362 DDEEEESIIPSGACGALVHGLE-DEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALT 435 (823)
T ss_pred ccccccccccccccceeeeech-HHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 1124799999999999998765421 246788999999999999999999999
Q ss_pred HHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 133 YLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 133 ~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
.|... ..++...++.+...|...+.++|+.....|..
T Consensus 436 ~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 436 MISVH------LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99864 33444566677777777777888766655544
No 133
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.83 E-value=0.49 Score=39.52 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=61.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCCHHHHHHcccC--CCCHHHHHHHHHHhhhhhcCC
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFAS--DPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~-~Q~~vle~G~l~~Ll~LL~s--d~~~~vr~kAl~ALS~LiR~~ 96 (315)
++..|-+-|+++++.++.+|..++-.++.|... ++..|.....+..|++++.. ..+..|+.|++..|-.....+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466777888899999999999999999999744 88888887888889999876 468899999998887765433
No 134
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.79 E-value=0.17 Score=43.18 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=63.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
++..|.+=|.+.++.++.+|..++.++++|. ..++..|.....+..|.+++....+..|+.+.+..|-.....+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 5666777788999999999999999999996 4688888899999999999876578999999998888765444
No 135
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.79 E-value=0.19 Score=42.09 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=60.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHH-HHHHHHHHhhhhhcC
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVT-VRTKALGAISSLIRH 95 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~-vr~kAl~ALS~LiR~ 95 (315)
++..|.+-|+++++.++.+|..++..+++| .+.++..|.....+..|..++....+.. |+.|++..|-.-...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999 4778888889999999999987755444 999999888776543
No 136
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.55 E-value=0.48 Score=40.29 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=79.7
Q ss_pred HHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHH
Q 021251 68 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVD 146 (315)
Q Consensus 68 ~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~ 146 (315)
.+|.-..++...+.-....-.|+-+++..+.+. ..++..|..-|++.++.++..|+.+|..++.+. ......+.
T Consensus 7 ~~I~kATs~~l~~~dw~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva 81 (142)
T cd03569 7 ELIEKATSELLGEPDLASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA 81 (142)
T ss_pred HHHHHHcCcccCccCHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 334443333323333556677888888765432 246777888899999999999999999999863 44567778
Q ss_pred hcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCC
Q 021251 147 KLGFPRLMLHLASS-EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 147 ~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~ 180 (315)
+.+++..|+.++.. .+..|+++++..+.+-+...
T Consensus 82 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 82 SREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999974 77889999999998877554
No 137
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=93.35 E-value=3.7 Score=39.54 Aligned_cols=181 Identities=19% Similarity=0.126 Sum_probs=108.1
Q ss_pred HcCChHHHHHh-hcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhc-------CC----HHHHHHccc---CC--CCH
Q 021251 20 SIGGLAPLLGY-LKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEA-------NG----LEPLLSNFA---SD--PDV 79 (315)
Q Consensus 20 ~~Ggl~~Ll~l-L~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-------G~----l~~Ll~LL~---sd--~~~ 79 (315)
....+..|+.+ |... .-.+|..|+.|+-....+|+..|.+|++. +. ...|++-|- .+ .++
T Consensus 32 ~~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dp 111 (312)
T PF04869_consen 32 PVPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDP 111 (312)
T ss_dssp -EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-H
T ss_pred CccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCH
Confidence 34445566653 3333 56899999999999999999999999954 11 112444333 11 233
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHc------Cc------HHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcch
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFRLA------NG------YAALRDALGS-----ESVKFQRKALNLIQYLLNENASDC 142 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~------gG------l~~L~~lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~ 142 (315)
---..|...++.++++++.+....+.- .| ++.+..+|.. .+.+++.--+.+|..-+.+++..-
T Consensus 112 y~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV 191 (312)
T PF04869_consen 112 YRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAV 191 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 334578899999999998876655432 12 3445555443 468888888888888887777766
Q ss_pred HHHHhc-CchHHHHHhhCC---CChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHh
Q 021251 143 SVVDKL-GFPRLMLHLASS---EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIK 204 (315)
Q Consensus 143 ~~l~~~-g~v~~Lv~LL~s---~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~ 204 (315)
..|... .-++.|+..... .+.-+|--+.-.|+.+..-+.... .-+...|...|.+|+.
T Consensus 192 ~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s----~~~R~~l~~ll~~riG 253 (312)
T PF04869_consen 192 NDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDS----PIPRATLHPLLTKRIG 253 (312)
T ss_dssp HHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SC----CC-HHHHHHHHHHHT-
T ss_pred HHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCC----CcCHHHHHHHHHHhcC
Confidence 666655 579999997543 455566666666666554332111 1224566777777774
No 138
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.34 E-value=2.8 Score=39.22 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCH---HHHHHc-ccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-HcCcH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGL---EPLLSN-FASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGY 109 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l---~~Ll~L-L~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl 109 (315)
...-|..-+-+|=.++..+|+.+..|++..+= -+++.. .++.+.+..|..+++.|+.|+.+.+.....|+ ..+.+
T Consensus 91 ~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 91 AQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 44566666666666777789999999998643 233333 23346788999999999999999887776776 56788
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---h---HHHHhc-CchHHH-HHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 110 AALRDALGSESVKFQRKALNLIQYLLNENASD---C---SVVDKL-GFPRLM-LHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~---~---~~l~~~-g~v~~L-v~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
+..++.+...+.--|.-|.+.+..++..+.-. + +.|-.- -++..+ ..+.+.++.-+..+++++...|...-
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999988654321 1 222211 123333 34455578888889998888876543
No 139
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.29 E-value=1.3 Score=38.32 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=81.0
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc--HHHHHHhhcCCC-HHHHHHHHHHHHHHhhc---C
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--YAALRDALGSES-VKFQRKALNLIQYLLNE---N 138 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--l~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~---~ 138 (315)
....+.++|.+ ++..-|..++.-+..+++.+. .+.|..+++ +..|+..|++++ ..++.-++.++..|+.. .
T Consensus 26 l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34557777776 467889999999999988764 245555444 467788888754 78888999999988753 3
Q ss_pred CcchHHHHhc---CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 139 ASDCSVVDKL---GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 139 ~~~~~~l~~~---g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
++..+.+..- +++..++.++.. ..+.+.++.+|..+....+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 4433332222 566777777665 6788999999999998887554
No 140
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.18 E-value=2.4 Score=43.70 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=117.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---CHHHHHHHHHHhhhhhcCCchhHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
.-++..+.+++..-|..|..-+..+..+ +.....|+.+.++..|.+++.++. ...+....+.|.|.+.-|....-+
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 3566788888888888899999888875 667788999999999999998763 346777888888888777543222
Q ss_pred HHHHcCcHHHHHHh--hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 102 AFRLANGYAALRDA--LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 102 ~f~~~gGl~~L~~l--L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
.+ ...++..+..+ .+..+..+-..|+..+..+....+.....+.+.--+..|+..+...+..++..|+..+-.+...
T Consensus 165 ~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 21 22233333333 2334677888899999999887777778888888899999999999999998888888777766
Q ss_pred Ccch
Q 021251 180 KADG 183 (315)
Q Consensus 180 ~~~~ 183 (315)
.+..
T Consensus 244 a~~~ 247 (713)
T KOG2999|consen 244 APDD 247 (713)
T ss_pred CChH
Confidence 6533
No 141
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=1.1 Score=49.27 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHh----cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHH
Q 021251 37 NIRAKAGEVVTTIVQNNPRSQQLVME----ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 112 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle----~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L 112 (315)
+=-..+..++.|+..-||.....|-. .|.++-++..+...++..++.-|+-.|+-+. .+.++...+...|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHH
Confidence 34456889999999999966443332 2778888888888788889999998887765 457777888888888888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251 113 RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 113 ~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~ 181 (315)
..+|+| -+..+..++..|..|.+. +.......+.|.+..+..++-. .+.+.|..++..+..+..+.-
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 888876 467889999999999875 4444555566777777766654 678899999999999987765
No 142
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=0.59 Score=49.69 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhc------------CCH-----HHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEA------------NGL-----EPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~------------G~l-----~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
++-++.+...+|+-+-||++..-+.+-.- ++. +-...+++-.++..+|+.|+-+|+-..-+.+
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 67788888888888888877765544311 111 1112222223467899999999999887766
Q ss_pred hhHHHHHHcCcH---------------HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 98 PGIEAFRLANGY---------------AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 98 ~~~~~f~~~gGl---------------~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.+.+.+ ..+++ ..+++||+.+|..+|+||+.++..|+.++ +.. .+++.|+.+|.+.+
T Consensus 327 ~NirYv-aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-----~mv~eLl~fL~~~d 398 (866)
T KOG1062|consen 327 NNIRYV-ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-----VMVKELLEFLESSD 398 (866)
T ss_pred cceeee-ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-----HHHHHHHHHHHhcc
Confidence 543222 11111 25778888899999999999888887542 222 23444555555555
Q ss_pred hHHHHHHHHHHHHHH
Q 021251 163 PDVREAALRGLLELA 177 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~ 177 (315)
.+++.....-+..++
T Consensus 399 ~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 399 EDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444444443
No 143
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=1.9 Score=41.43 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=93.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh--cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME--ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle--~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.-++.+|.+.++.||..|...+..++.. ..|. +.+ .-.++.|.+++.. .+. ...|+.|+-|+..+..- .+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~-~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l-~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQS-LSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEEL-RKK 78 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhh-hccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHH-HHH
Confidence 3567899999999999999888777665 2322 222 2467778888764 333 67888999998865432 344
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHHHHhhCCCCh-HH-HHHHHHHHH
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLMLHLASSEDP-DV-REAALRGLL 174 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~------~g~v~~Lv~LL~s~d~-~v-~e~aL~aL~ 174 (315)
++.. -+..++..+..+..-+-.-.|.++++|.+........+.. .|.++.......++-. .. -......+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 4443 5666777777777778888899999999765443333321 3455555555554221 12 234445556
Q ss_pred HHHcCCc
Q 021251 175 ELAREKA 181 (315)
Q Consensus 175 ~L~~~~~ 181 (315)
+|.+...
T Consensus 158 nls~~~~ 164 (353)
T KOG2973|consen 158 NLSQFEA 164 (353)
T ss_pred HHhhhhh
Confidence 6655543
No 144
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=0.45 Score=50.08 Aligned_cols=111 Identities=23% Similarity=0.270 Sum_probs=78.6
Q ss_pred CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251 13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L 92 (315)
|.|+|+. +-++.+|++..+-+|.+|.-++-.+.---|+. +. ..+|+|..-|. |+|+.|+..|+..||-|
T Consensus 140 dLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLe-DpDp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 140 DLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLE-DPDPSVVSAAVSVICEL 208 (877)
T ss_pred hhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhcc-CCCchHHHHHHHHHHHH
Confidence 4455543 34677889999999999999987766555542 22 36899999987 57999999999999999
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCC
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENA 139 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~ 139 (315)
+|.+|..+-.+ -|.+..+|.+ .+.=+..|..-++.+|.--.|
T Consensus 209 ArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 209 ARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred HhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence 99998754332 3555666544 445566666666666664433
No 145
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.84 E-value=1.8 Score=46.35 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=43.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
++++.++++++++.||..|+-+|+.+-+-++ +.+.+.|.+..+..++. |+++.|.+.|+.++-.+...
T Consensus 129 ~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~-D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVA-DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhh-CCCchHHHHHHHHHHHhchh
Confidence 4566667777777777777777777766544 34555566665555543 45667777777777666543
No 146
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.84 E-value=0.94 Score=38.63 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=72.8
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCC-
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASS- 160 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s- 160 (315)
...+-.||-+++..+.+.+ ..+..|..-|.+.++.++..|+.+|..++.+.. .....+.+..|+..|+.++..
T Consensus 18 w~~il~icD~I~~~~~~~k-----~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~ 92 (144)
T cd03568 18 WGLILDVCDKVKSDENGAK-----DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR 92 (144)
T ss_pred HHHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc
Confidence 4556667777776543322 356678888889999999999999999997654 345677788999999999988
Q ss_pred CChHHHHHHHHHHHHHHcCC
Q 021251 161 EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 161 ~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+..|+++++..+.+.+...
T Consensus 93 ~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 78899999999998876555
No 147
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=7.4 Score=39.26 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=118.0
Q ss_pred hhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC---------HHHHHHHHhcCCHHHHHHcccCCCC
Q 021251 8 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN---------PRSQQLVMEANGLEPLLSNFASDPD 78 (315)
Q Consensus 8 LveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN---------p~~Q~~vle~G~l~~Ll~LL~sd~~ 78 (315)
+....|-=-.|+++.|++.|+.+|.++|.+|-.....++-.++... ...-+++++.+.++.|++.+.. -+
T Consensus 111 lAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR-Ld 189 (536)
T KOG2734|consen 111 LATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER-LD 189 (536)
T ss_pred hhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH-hh
Confidence 3444555567889999999999999999999999999887665321 1334567788899999988764 23
Q ss_pred HHHHH------HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 021251 79 VTVRT------KALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGF 150 (315)
Q Consensus 79 ~~vr~------kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~ 150 (315)
++++. .++.-+-|++-=.+......++.|-+.-|..-+.. .-..-+..|...++-+++.....+..+...+.
T Consensus 190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 33332 34455556665555555666676555555543333 33566777888888888877778888888888
Q ss_pred hHHHHHhhCC----C-----ChHHHHHHHHHHHHHHcCCc
Q 021251 151 PRLMLHLASS----E-----DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 151 v~~Lv~LL~s----~-----d~~v~e~aL~aL~~L~~~~~ 181 (315)
|..++.-+.. + ..+.-|.....|+.+.....
T Consensus 270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~ 309 (536)
T KOG2734|consen 270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA 309 (536)
T ss_pred HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh
Confidence 8877776643 1 23466777788887766554
No 148
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.81 E-value=0.75 Score=38.51 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=72.4
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
...+-.|+-+++..+.+.. .++..|..-|++.++.++..|+.+|..++.+. ......+.+.+|+..|+.++...
T Consensus 18 w~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~ 92 (133)
T smart00288 18 WELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK 92 (133)
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence 5566778888887654332 35667888899999999999999999999874 44556777889999999999883
Q ss_pred -ChH-HHHHHHHHHHHHHcCC
Q 021251 162 -DPD-VREAALRGLLELAREK 180 (315)
Q Consensus 162 -d~~-v~e~aL~aL~~L~~~~ 180 (315)
+.+ |+++++..+..-+...
T Consensus 93 ~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 93 YPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 334 9999999998876654
No 149
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=1.6 Score=47.38 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC------C-CCHHHHHHHHHHhhhhhc---CCchhHHHHHHcCcH
Q 021251 41 KAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS------D-PDVTVRTKALGAISSLIR---HNKPGIEAFRLANGY 109 (315)
Q Consensus 41 ~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s------d-~~~~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGl 109 (315)
.|...+-+++.-- ++. =.|.++-++++|.+ + .+.--+--|+.++|++++ ...+ ++...+.=-+
T Consensus 391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~~~~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-YKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-hHHHHHHHHH
Confidence 4555565555431 111 11345556666652 1 234445567777777663 3222 2222222233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-CCChHHHHHHHHHHHHHHcCCcchhhhhh
Q 021251 110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKADGSAIKL 188 (315)
Q Consensus 110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~-s~d~~v~e~aL~aL~~L~~~~~~~~~~c~ 188 (315)
.-+...++++.--+|.||||.++.++..+-.+...+. .+++....+|. +.+-+|+-.|+-||..+..+.......
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~-- 540 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK-- 540 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh--
Confidence 4455667888999999999999999965433333333 35566667776 678899988888999999888644211
Q ss_pred hhhHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 021251 189 AEDNEKLKQLLGERIKGISLMSPEDLGAAREE 220 (315)
Q Consensus 189 ~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE 220 (315)
-...++..+++-++-....+-||+..+.|.
T Consensus 541 --~~~hvp~~mq~lL~L~ne~End~Lt~vme~ 570 (1010)
T KOG1991|consen 541 --VSAHVPPIMQELLKLSNEVENDDLTNVMEK 570 (1010)
T ss_pred --HhhhhhHHHHHHHHHHHhcchhHHHHHHHH
Confidence 134555556666555554455666554444
No 150
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.41 E-value=1.4 Score=38.21 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 24 LAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 24 l~~Ll~lL~s~-~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
++.|+++|+++ +..+|..|.+++|.+-.=.|.-.+.+....- ..-..+.........+. ..+..+..+.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l~-----~~~~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISLP-----MMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHHh-----hccCCCchHH
Confidence 56677888764 6889999999999999888875443222211 00000111111111111 1122224566
Q ss_pred HHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 103 FRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
|.-...+..|++.|+.+. ...+..++.++.+++..-...+-.+. ..+++.++..+++.+...+|-.+.-|..|+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 766778888999998876 56666778888887754222221111 1478888888887666888888877776653
No 151
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.24 E-value=3.3 Score=47.09 Aligned_cols=107 Identities=17% Similarity=0.291 Sum_probs=77.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL 105 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 105 (315)
.|+..|..+...||..|..||+.++.-.|.+.. ....-.....-+. |....||..|+--++..+--++....++
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~~qy-- 893 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELIFQY-- 893 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHHHHH--
Confidence 344566778899999999999999887664311 1122222333332 4578999999999998777666554444
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251 106 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141 (315)
Q Consensus 106 ~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~ 141 (315)
+..+..-+..+...||.++...++.++.+.|..
T Consensus 894 ---Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 894 ---YDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred ---HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 345777777888999999999999999987764
No 152
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=92.22 E-value=3.7 Score=42.52 Aligned_cols=151 Identities=18% Similarity=0.143 Sum_probs=95.9
Q ss_pred ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq--NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
-.-.++--..+|.+..-|.+.+++||..+-.+|-.++. .||.+|. .+|.|+..+...+ .--.+++..|+.
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~dp~--~~~~e~~~~L~~ 358 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALADPS--CYTPECLDSLGA 358 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhcCcc--cchHHHHHhhcc
Confidence 33344445567888888889999999999999875544 5677665 4789999987532 122445555544
Q ss_pred hhcCCchhHHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHH
Q 021251 92 LIRHNKPGIEAFRLANGYAALRDALG----SESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDV 165 (315)
Q Consensus 92 LiR~~~~~~~~f~~~gGl~~L~~lL~----s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v 165 (315)
-. +-.+++.--+.+++.+|+ ..+..++++++-.+.+++..-++- ..+... .+++.+=..+....+++
T Consensus 359 tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp-~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 359 TT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP-KDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred ee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH-HHHhhhHHHHhhHHHHHhcCCChhH
Confidence 21 123334455555555554 456788899999888888653222 122111 23444444455567899
Q ss_pred HHHHHHHHHHHHcC
Q 021251 166 REAALRGLLELARE 179 (315)
Q Consensus 166 ~e~aL~aL~~L~~~ 179 (315)
|+-+.++|+.+.++
T Consensus 432 R~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 432 RAVAARALGALLER 445 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 153
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.21 E-value=0.16 Score=42.77 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=58.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHH---HHHHHHHHhhhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVT---VRTKALGAISSLI 93 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~---vr~kAl~ALS~Li 93 (315)
++..|-+-|.+.++.++.+|..++..+++|. +.++..|.....+..|..++.+..... |+.|++-.|..-.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999997 788888888889999999887654444 8999887776643
No 154
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=0.59 Score=49.35 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=60.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+.||.++|++.++.+|..|+-+++.+-.-++ +.+...|.++.|-.++. |.++.|..+|+.|++.+.-.++
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence 5688889999999999999999999998876 45778899999999987 5678899999999999877664
No 155
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.19 E-value=1.3 Score=46.69 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
.++-..+|.|.+.+++.+..++..+..++.+++.-=+ -.+++.-++|.|-.+....++..++++++-|+.-++.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--- 458 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--- 458 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence 4445578888899999999999999999999987433 4567777889988886666789999999999999982
Q ss_pred hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH
Q 021251 98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD 164 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~ 164 (315)
..+.+--..-+..+....+..++.+......+...+.-..+.. ..+.-..+++.++.+...+...
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence 2333333345667778888899999999888888877544433 3444456777777776665433
No 156
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.19 E-value=1.5 Score=41.09 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=108.0
Q ss_pred HHHHhhcCCCChhHHH-----HcCChHHHHHh-------hcCC--CHHHHHHHHHHHH---HHhhCCHHHHHHHHhcCCH
Q 021251 4 ELQEHVESIDMANDLH-----SIGGLAPLLGY-------LKNS--HANIRAKAGEVVT---TIVQNNPRSQQLVMEANGL 66 (315)
Q Consensus 4 ~L~dLveniDnA~d~~-----~~Ggl~~Ll~l-------L~s~--~~~vR~~Aa~~Lg---tiaqNNp~~Q~~vle~G~l 66 (315)
.|.+|.+..+.-.++. .-|.+..|++- |..+ .+..-.+.|.+++ .+|+ +|+.+..|++....
T Consensus 15 Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~Fl~a~ip 93 (262)
T PF04078_consen 15 ALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPFLKAHIP 93 (262)
T ss_dssp HHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHHHHTTGG
T ss_pred HHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHcCch
Confidence 3555555554433332 35666666532 2222 2333445555555 4555 79999999999865
Q ss_pred HHHHHcccCC----CCHHHHHHHHHHhhhhhcCCchhHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-
Q 021251 67 EPLLSNFASD----PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS- 140 (315)
Q Consensus 67 ~~Ll~LL~sd----~~~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~- 140 (315)
-.|.-.|... +-+.+|..+++-|++++.....-.-.| ....-++...+.|...+.--|..|.|.+..++.++..
T Consensus 94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL 173 (262)
T PF04078_consen 94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGL 173 (262)
T ss_dssp GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHH
T ss_pred hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHH
Confidence 4444444321 236799999999999999765544444 4667889999999999999999999999999875321
Q ss_pred -----chHHHHhc-CchHHHHH-hhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 141 -----DCSVVDKL-GFPRLMLH-LASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 141 -----~~~~l~~~-g~v~~Lv~-LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
..+.+... .++..++. +...++.-+-.++.++-..|+.+..
T Consensus 174 ~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 174 NYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 11222221 23333333 3445677788888888888877653
No 157
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.11 E-value=0.25 Score=30.64 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.3
Q ss_pred chHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 150 FPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 150 ~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+++.+++++..++..+|..|+.+|..++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999999875
No 158
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.06 E-value=4.4 Score=42.15 Aligned_cols=167 Identities=10% Similarity=0.026 Sum_probs=104.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcH
Q 021251 30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 109 (315)
Q Consensus 30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl 109 (315)
-+++++-.-|+.|+.++|.+...--+.+-.-+=..++|.++.+.. |+..-++..+.|+++.+.-|-... +-..|-+
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~---i~p~~Hl 449 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMI---ISPCGHL 449 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHh---cCccccc
Confidence 456678889999999999887652222233333468998888854 778899999999999987653322 2223333
Q ss_pred HHHHHh-hc--CCCHHHHHHHHHHHHHHhhcCCcch----HHHHhc--CchHHHHHhhC--CCChHHHHHHHHHHHHHHc
Q 021251 110 AALRDA-LG--SESVKFQRKALNLIQYLLNENASDC----SVVDKL--GFPRLMLHLAS--SEDPDVREAALRGLLELAR 178 (315)
Q Consensus 110 ~~L~~l-L~--s~~~kl~~kA~~lLs~Ll~~~~~~~----~~l~~~--g~v~~Lv~LL~--s~d~~v~e~aL~aL~~L~~ 178 (315)
+..+.. |. .+.+++-..++|.+.+|+.+-+... ..+... .++..|++--. ..+...|..+..+|+.|+.
T Consensus 450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 333333 22 2568999999999999987543321 111111 12222222211 2567899999999999999
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHh
Q 021251 179 EKADGSAIKLAEDNEKLKQLLGERIK 204 (315)
Q Consensus 179 ~~~~~~~~c~~~~~~~L~~~L~~~~~ 204 (315)
-+++.+..- ...+....-+++.
T Consensus 530 ~~~d~V~~~----~a~~~~~~~~kl~ 551 (858)
T COG5215 530 ICPDAVSDI----LAGFYDYTSKKLD 551 (858)
T ss_pred hcchhHHHH----HHHHHHHHHHHHH
Confidence 888777433 4444444444443
No 159
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=0.91 Score=46.71 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=123.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHh---hCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIV---QNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~Lgtia---qNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
+.|..+|..++.+||..+-.+++..- ++.|.+ +++ ..++.|+.-+.+ +++.++.+|+.-|--.+.-.+...
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcch
Confidence 34456777899999998888887553 355543 233 578888888876 578999999988887776555433
Q ss_pred HHHHHcCcHHHHHHhhcCCCHH-HHHHHH---HHHHHHhhcCCcchHHHHhcC-chHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 101 EAFRLANGYAALRDALGSESVK-FQRKAL---NLIQYLLNENASDCSVVDKLG-FPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~k-l~~kA~---~lLs~Ll~~~~~~~~~l~~~g-~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
-.+ -.|.+..+..++.++..+ ++.-+. ..+..++.+. ...+. ++.| ++..+...+.++..+.|-.+++-+..
T Consensus 286 l~~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 286 LLY-LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred hhh-hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 222 346677788888877664 332222 2333444322 11112 3433 67778888888999999999988888
Q ss_pred HHcCCcchhhhhhhhhHHHHHHHHHHHH-----------hhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCccccccee
Q 021251 176 LAREKADGSAIKLAEDNEKLKQLLGERI-----------KGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLL 244 (315)
Q Consensus 176 L~~~~~~~~~~c~~~~~~~L~~~L~~~~-----------~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~~~~~~ 244 (315)
|-+..+..........-..|...|..+- ..|-. +.++. .-+.+..+|++-+-.++..++..|-+
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~-s~~~~----~~~~fl~sLL~~f~e~~~~l~~Rg~l 437 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS-SSNSP----NLRKFLLSLLEMFKEDTKLLEVRGNL 437 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc-Ccccc----cHHHHHHHHHHHHhhhhHHHHhhhhH
Confidence 8777765443221111112222221111 11111 11221 22667777777777777777777644
Q ss_pred e
Q 021251 245 V 245 (315)
Q Consensus 245 ~ 245 (315)
+
T Consensus 438 I 438 (675)
T KOG0212|consen 438 I 438 (675)
T ss_pred H
Confidence 3
No 160
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.96 E-value=1.6 Score=47.16 Aligned_cols=166 Identities=20% Similarity=0.210 Sum_probs=107.4
Q ss_pred HHHHHhhcCCCChhHHHHcCChH---HHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHH-HHHHHhcCCHHHHHHcccCCC
Q 021251 3 DELQEHVESIDMANDLHSIGGLA---PLLGY-LKNSHANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~---~Ll~l-L~s~~~~vR~~Aa~~LgtiaqNNp~~-Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
|-|+.+++-+.++.--...|... .++.. +...|..+-..|+.+|.-++.-.... +.+ ..+.++.|+.-+..-.
T Consensus 272 Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~--~~~v~p~lld~lkekk 349 (815)
T KOG1820|consen 272 EALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY--AKNVFPSLLDRLKEKK 349 (815)
T ss_pred HHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH--HHhhcchHHHHhhhcc
Confidence 45666666666666112222222 23332 23468889999999999988865433 221 2256788887776421
Q ss_pred --CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHH
Q 021251 78 --DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLM 154 (315)
Q Consensus 78 --~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~L 154 (315)
-..+.++++-++++.+. ...-.+.+..++++.++.++..+..++...+.... .....-.-.++++.+
T Consensus 350 ~~l~d~l~~~~d~~~ns~~----------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~ 419 (815)
T KOG1820|consen 350 SELRDALLKALDAILNSTP----------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHL 419 (815)
T ss_pred HHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHH
Confidence 23445566666666211 11245678888999999999998888887776544 222222233688888
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 155 LHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 155 v~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
+......+.+||..|++++..+.+..
T Consensus 420 ~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 420 IKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred hhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999998877654
No 161
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.88 E-value=3.5 Score=42.83 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=98.2
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251 28 LGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 106 (315)
Q Consensus 28 l~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 106 (315)
++-|.++.+.+-..|+.+|+.|+.- -|..+. -|.+..++.....+....++..++.+++++|-.-.| +..+-..
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w----p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~s 174 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLW----PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMS 174 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccc----hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHh
Confidence 4567778888888888888887752 122111 144556666666667789999999999999987655 2222223
Q ss_pred Cc--HHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhc---C-chHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 107 NG--YAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKL---G-FPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 107 gG--l~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~---g-~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+. +.+....++. ++..+|.-|+.+|.+=+- ..+..+... + +...+++.-..+|..++.+|..+|..|..-
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 32 3455555655 458888888888876221 122233322 2 334455666779999999999999999887
Q ss_pred Ccchh
Q 021251 180 KADGS 184 (315)
Q Consensus 180 ~~~~~ 184 (315)
...+.
T Consensus 252 yY~fm 256 (858)
T COG5215 252 YYKFM 256 (858)
T ss_pred HHHHH
Confidence 77665
No 162
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.80 E-value=1.3 Score=37.58 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=73.8
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
-..++..|+-+++..+.+. ..++..|..-|++.+++++..|+.+|-.++.+. +.....+.+.+|+..|+.++..
T Consensus 18 dw~~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 18 DWEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred CHHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence 3566777888887654332 246777888899999999999999999999754 4456778888999999999963
Q ss_pred ------CChHHHHHHHHHHHHHHcCC
Q 021251 161 ------EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 161 ------~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+..|+++++..+.+-+...
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 93 KYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 57889999999998877654
No 163
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.65 E-value=1.8 Score=46.66 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=87.4
Q ss_pred hhHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc---CCCC----HHHH
Q 021251 15 ANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SDPD----VTVR 82 (315)
Q Consensus 15 A~d~~~~Ggl~~Ll~lL~s-----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~---sd~~----~~vr 82 (315)
++.+.+.||+..++.+|.+ ....+-.....++..+++ -+.+|+++++.|+++.|+..+. .+.. ..+-
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 5567779999999999976 345677778888888887 5889999999999999998875 2222 4555
Q ss_pred HHHHHHhhhhhcCCch----hHHHHHHcCc--------HHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCCcch
Q 021251 83 TKALGAISSLIRHNKP----GIEAFRLANG--------YAALRDALGSE----SVKFQRKALNLIQYLLNENASDC 142 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~----~~~~f~~~gG--------l~~L~~lL~s~----~~kl~~kA~~lLs~Ll~~~~~~~ 142 (315)
.+.+--+-.++..-.. ....+....| +..++..+.++ +.++....+.+|-+|+-++++..
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 6666655555443211 1112223333 66777777664 58888888888888887665543
No 164
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.63 E-value=3 Score=43.24 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=62.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
++..++.|++.++..||.+|...|-.+|.+||+.-.. ....|.+||.++ +......+=.+|..+.+.++.+
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k~--- 130 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPKG--- 130 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HHH---
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcHH---
Confidence 5778899999999999999999999999998754333 356789999875 5566666667777877765543
Q ss_pred HHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHh
Q 021251 103 FRLANGYAALRDAL---GSESVKFQRKALNLIQYLL 135 (315)
Q Consensus 103 f~~~gGl~~L~~lL---~s~~~kl~~kA~~lLs~Ll 135 (315)
-+..|..-+ .+.+..+|.+++..|..=+
T Consensus 131 -----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 131 -----TLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp -----HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred -----HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 222222222 2567889999997776433
No 165
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.53 E-value=1.2 Score=47.34 Aligned_cols=131 Identities=21% Similarity=0.133 Sum_probs=89.8
Q ss_pred HHcccCCCCHHHHHHHHHHhhhhhcCCchhH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251 70 LSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL 148 (315)
Q Consensus 70 l~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~ 148 (315)
+..|.+ ++..||..|+-.+|+++.--+... .+...+-| -+|.+-|....+.+.--.+.+|.++.......+..=--.
T Consensus 805 L~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 805 LWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 334444 578899999999888764322221 11222222 257888888888888877777777775432221111123
Q ss_pred CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh------hhhhhhhHHHHHHHHHHHHhhcc
Q 021251 149 GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS------AIKLAEDNEKLKQLLGERIKGIS 207 (315)
Q Consensus 149 g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~------~~c~~~~~~~L~~~L~~~~~~i~ 207 (315)
++++.|..+|++.+..+++.+...++.++..++..+ +.| -+|.+.|....+.|.
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-----feLlelLkahkK~iR 942 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-----FELLELLKAHKKEIR 942 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988654 556 667777777766665
No 166
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.49 E-value=6 Score=45.14 Aligned_cols=173 Identities=15% Similarity=0.183 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc
Q 021251 38 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG 117 (315)
Q Consensus 38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~ 117 (315)
-...|.|+.-.++++-|..|. | .+.+..++..+.. +...+|.||+-+||.++.-.+.... ....-..+..-+.
T Consensus 793 d~~~a~li~~~la~~r~f~~s-f--D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-F--DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLN 865 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-h--HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhc
Confidence 455677777788887776543 1 1347778888774 6789999999999999865443211 1112222334455
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHH
Q 021251 118 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQ 197 (315)
Q Consensus 118 s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~ 197 (315)
.....||..|+.+++...-..++.... +-..+++-+......||.+|++.+..++...+.+.. - ..
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~----i-----~~ 931 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK----I-----VD 931 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh----H-----HH
Confidence 567899999999999666544443211 334455666667889999999999999999998751 1 22
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251 198 LLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS 237 (315)
Q Consensus 198 ~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~ 237 (315)
.+.+-++++. ++|+ .+++- .|+++.+-.|..++.
T Consensus 932 ~cakmlrRv~--DEEg--~I~kL--v~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 932 MCAKMLRRVN--DEEG--NIKKL--VRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHHHhc--cchh--HHHHH--HHHHHHHHhccCCCc
Confidence 2233334444 1221 13222 357777888877543
No 167
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.30 E-value=1.5 Score=36.87 Aligned_cols=94 Identities=24% Similarity=0.210 Sum_probs=72.9
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
-..++.-||-+++..+.+.+ ..+..|..-|.+.+++++..|+.+|-.++.+. +.....+....|+..|..++.+
T Consensus 22 Dw~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 22 DWSLILEICDLINSSPDGAK-----EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp -HHHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc
Confidence 35666778888887744432 35667888899999999999999999999865 4556677777899999998876
Q ss_pred C-ChH---HHHHHHHHHHHHHcCC
Q 021251 161 E-DPD---VREAALRGLLELAREK 180 (315)
Q Consensus 161 ~-d~~---v~e~aL~aL~~L~~~~ 180 (315)
. ... |+++++..|.......
T Consensus 97 ~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 97 KKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp TTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred CCCCchhHHHHHHHHHHHHHHHHH
Confidence 3 333 8999999998877766
No 168
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.09 E-value=12 Score=37.08 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=107.9
Q ss_pred HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHH
Q 021251 5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHA----------------------------------NIRAKAGEVVTTI 49 (315)
Q Consensus 5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~----------------------------------~vR~~Aa~~Lgti 49 (315)
|.-++... +-...|.+.||+..++..|+.+-. .+...-.+.|..+
T Consensus 8 ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~l~~~ 87 (379)
T PF06025_consen 8 LDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKFLSHA 87 (379)
T ss_pred HHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHH
Confidence 44445544 345689999999999876653211 1122223344444
Q ss_pred hh---CCHHHHHHHHh-cCCHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-C---C
Q 021251 50 VQ---NNPRSQQLVME-ANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-S---E 119 (315)
Q Consensus 50 aq---NNp~~Q~~vle-~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s---~ 119 (315)
.+ ++...-..+++ ...+..|-.++++. --..+-..|+..++.++.+.|..+..+.++|-.+.++..+. . +
T Consensus 88 ~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~ 167 (379)
T PF06025_consen 88 MQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILP 167 (379)
T ss_pred hccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCC
Confidence 44 33333344555 33344455555543 23577888999999999988888888889899999999988 4 4
Q ss_pred CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 120 ~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
+.++..-.-.+|++||- +....+.+.+.+.++.+.+++.+++
T Consensus 168 s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 168 SSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred cHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 57888888888999986 4567788888999999999998854
No 169
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.02 E-value=18 Score=37.01 Aligned_cols=198 Identities=18% Similarity=0.160 Sum_probs=121.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCC---HHHHHHHHhcCCHHHHHHcccCC------CCHHHHHHHHHHhhhhhcCC
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNN---PRSQQLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN---p~~Q~~vle~G~l~~Ll~LL~sd------~~~~vr~kAl~ALS~LiR~~ 96 (315)
-+..++...+.+=|-.|...+...+.|. ...+..+++.=|++-+=++|.+. ++.-.+.-++.-|.|.||.-
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3567777788888999999999999873 44566688887776666666542 34567778888999999975
Q ss_pred chhH-HHHHHcCcHHHHHHhhcCC-C------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHH-H
Q 021251 97 KPGI-EAFRLANGYAALRDALGSE-S------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVR-E 167 (315)
Q Consensus 97 ~~~~-~~f~~~gGl~~L~~lL~s~-~------~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~-e 167 (315)
+-+. ..++ +.+|.|..++... | -.+...+-.+|..++.. +.....++..|.++.+.+.-...+-..- +
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 4432 3333 5789999998652 2 23666666777766654 6677888899999999865554433322 2
Q ss_pred HHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251 168 AALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS 237 (315)
Q Consensus 168 ~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~ 237 (315)
-++..+.-++.... |-..+...|..+|+.--++.+. +..+. .-|+|.-|..+.|.+++.
T Consensus 172 lal~Vlll~~~~~~-----cw~e~~~~flali~~va~df~~----~~~a~--KfElc~lL~~vl~~~~~e 230 (698)
T KOG2611|consen 172 LALKVLLLLVSKLD-----CWSETIERFLALIAAVARDFAV----LHNAL--KFELCHLLSAVLSSEYSE 230 (698)
T ss_pred HHHHHHHHHHHhcc-----cCcCCHHHHHHHHHHHHHHHHH----hhhHH--HHHHHHHHHHHHhCChHH
Confidence 33333333332221 1133344444444433333222 11222 245787777777777654
No 170
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=5.5 Score=44.24 Aligned_cols=152 Identities=19% Similarity=0.166 Sum_probs=102.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC------CHHHHHHcccCC--CCHHHHHHH-HHHhhhhhcC
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN------GLEPLLSNFASD--PDVTVRTKA-LGAISSLIRH 95 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G------~l~~Ll~LL~sd--~~~~vr~kA-l~ALS~LiR~ 95 (315)
+-+|-+++..+..-|..|-.+|=.+.. + +.+.+.| .+...+.++... .+....+.. +.|+.++..+
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i-~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGA----I-QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHH----H-HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 333333366788888888888877662 0 1112222 344444443322 233333333 8999998877
Q ss_pred CchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 96 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 96 ~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
+......-.-.+-++.+...|.++...+..-|+.++.-++...|...-.....-+++.+..+++.....++.++-..|--
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 65544333344667888888999999999999999999998877654333333478888888887889999999999999
Q ss_pred HHcCCc
Q 021251 176 LAREKA 181 (315)
Q Consensus 176 L~~~~~ 181 (315)
|++.+-
T Consensus 896 Lirkfg 901 (1176)
T KOG1248|consen 896 LIRKFG 901 (1176)
T ss_pred HHHHhC
Confidence 888775
No 171
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=90.71 E-value=12 Score=38.80 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=99.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
+-+.+++.++...-|.-|++.++-++.++.- ..+.+.+.+..|-..+....+...|.-++.|.-..+.+--+.+...
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy- 213 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY- 213 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch-
Confidence 3455777878888999999999999988653 5677888898888887654333334345555555444432222211
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
-..-++.+.....+...++|..|..+...+....+...- + -+++.++.-+......-..+++..|+.++..-+...
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV---K-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV---K-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh---h-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHH
Confidence 113445555556667899999999999998865432210 1 133333333333344566788889998888888777
Q ss_pred hhh
Q 021251 185 AIK 187 (315)
Q Consensus 185 ~~c 187 (315)
..|
T Consensus 290 s~~ 292 (569)
T KOG1242|consen 290 SLC 292 (569)
T ss_pred HHH
Confidence 666
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.70 E-value=15 Score=34.54 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=88.8
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCC
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s-----~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
.|+=+....|....|.+...=-.|..+|+. +.+-+|-.|..+||.+++|. .++-..++..+++|..++.+...
T Consensus 102 LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G- 180 (293)
T KOG3036|consen 102 LLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG- 180 (293)
T ss_pred HHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-
Confidence 455566677888888887632333467643 57889999999999999985 45556666789999999999875
Q ss_pred CHHHHHHHHHHhhhhhcCCchh------HHHHHHcC-cH-HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 78 DVTVRTKALGAISSLIRHNKPG------IEAFRLAN-GY-AALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~------~~~f~~~g-Gl-~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
++.-+.-|+|-+--+.-+...- .+.|..-+ -+ .++..+.+.++.++...+..+...|..
T Consensus 181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 6777888888887766553321 12232111 11 233444455677888777777666654
No 173
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.69 E-value=0.37 Score=50.09 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=54.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHH---HHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251 21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE---PLLSNFASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~---~Ll~LL~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
.|.+|.|...|++.+..|.+.....+|+|+.|.|+- +--..++. -|+.+|.+ .+.++|+.|.-.++|+.|-
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey---i~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY---IGVREWMRICFELVDSLKS-WNKEIRRNATETFGCISRA 760 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc---CCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhh
Confidence 467788889999999999999999999999998862 11111222 36666665 5789999999999998763
No 174
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.60 E-value=1.3 Score=46.87 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=77.0
Q ss_pred hcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251 9 VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA 88 (315)
Q Consensus 9 veniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A 88 (315)
.++.|.-+||+. |.+..+++-..+.+..||.+.+.+|+.+..++.++-+.+.. +...+|+.-+. |..+.||..|+.|
T Consensus 73 l~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~-Drep~VRiqAv~a 149 (892)
T KOG2025|consen 73 LPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLK-DREPNVRIQAVLA 149 (892)
T ss_pred hhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHh-ccCchHHHHHHHH
Confidence 356778888765 45777778888899999999999999999877766444443 45555444433 3467999999999
Q ss_pred hhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHH
Q 021251 89 ISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLI 131 (315)
Q Consensus 89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lL 131 (315)
||.+=-.. .-.. ......+..+++. +++.+|+-|+..|
T Consensus 150 LsrlQ~d~--~dee---~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 150 LSRLQGDP--KDEE---CPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHhcCC--CCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 99975211 1111 1334455666654 4577777665443
No 175
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.42 E-value=11 Score=40.24 Aligned_cols=166 Identities=16% Similarity=0.250 Sum_probs=102.9
Q ss_pred hhHHHHcCChH-HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc---CC---------CCHHH
Q 021251 15 ANDLHSIGGLA-PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SD---------PDVTV 81 (315)
Q Consensus 15 A~d~~~~Ggl~-~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~---sd---------~~~~v 81 (315)
.-|+++.|+|. .++.+|+..+-.|--.|...|-.++.+||+.+...+-. ++..|..+.. .+ +.+=+
T Consensus 179 spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 179 SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHH
Confidence 34667778885 67799999999999999999999999999876543322 2233333321 11 34567
Q ss_pred HHHHHHHhhhhhcCCchhHH---------------------HHHHcCc-----HHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 021251 82 RTKALGAISSLIRHNKPGIE---------------------AFRLANG-----YAALRDALGS-ESVKFQRKALNLIQYL 134 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~---------------------~f~~~gG-----l~~L~~lL~s-~~~kl~~kA~~lLs~L 134 (315)
.+|++..|.+.=+-.+++.. .+-+.+. +..+--+++. ..+.+..+||..|..+
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f 337 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQF 337 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 77777777776333222111 0111111 2222222333 4588999999999998
Q ss_pred hhcCCcchH--------HHHhcC--------chHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251 135 LNENASDCS--------VVDKLG--------FPRLMLHLASS-EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 135 l~~~~~~~~--------~l~~~g--------~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+++...+.+ .++..+ -...++..|++ .|..+|.+|+..|..++.-..
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 876544322 111111 14567777884 789999999999998887664
No 176
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=5.9 Score=42.52 Aligned_cols=135 Identities=18% Similarity=0.088 Sum_probs=86.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++-+.-|.++.+.++-..|..+||.|++++-.+.... +.-|+.++++. +..|...|+..|--|+..++.-...
T Consensus 394 LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tC-----L~gLv~Llssh-de~Vv~eaV~vIk~Llq~~p~~h~~- 466 (968)
T KOG1060|consen 394 LRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTC-----LNGLVQLLSSH-DELVVAEAVVVIKRLLQKDPAEHLE- 466 (968)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHH-----HHHHHHHHhcc-cchhHHHHHHHHHHHHhhChHHHHH-
Confidence 4444456677787899999999999999876654443 55688888774 7788889999998888765543222
Q ss_pred HHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHH
Q 021251 104 RLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL 174 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~ 174 (315)
-+.-|.+++.+ .-+..|.-.+|+++..+..-+.. --.+++.++.-+.++...++-++|+.-.
T Consensus 467 ----ii~~La~lldti~vp~ARA~IiWLige~~e~vpri-----~PDVLR~laksFs~E~~evKlQILnL~a 529 (968)
T KOG1060|consen 467 ----ILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI-----APDVLRKLAKSFSDEGDEVKLQILNLSA 529 (968)
T ss_pred ----HHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-----chHHHHHHHHhhccccchhhHHHHHhhh
Confidence 24456666654 23677777788887766532221 1134444555555555555555554433
No 177
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.29 E-value=2.9 Score=40.63 Aligned_cols=165 Identities=12% Similarity=0.129 Sum_probs=119.3
Q ss_pred ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHH
Q 021251 14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEA--NGLEPLLSNFASDPDVTVRTKAL 86 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-----~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl 86 (315)
-|..+.+.+.+..|+..|..=+-+.|..++.+.+++....+ ...+++.++ .++..|+.--+. +++...+-
T Consensus 68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g 144 (335)
T PF08569_consen 68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCG 144 (335)
T ss_dssp HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHH
T ss_pred HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHH
Confidence 35678888999999999999899999999999998865421 234555554 456666666543 23334444
Q ss_pred HHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchHHHHHhhCCCCh
Q 021251 87 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPRLMLHLASSEDP 163 (315)
Q Consensus 87 ~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~---g~v~~Lv~LL~s~d~ 163 (315)
.-|--.+|+ +.....++...-+.-+....+.++=.+-..|...+..|+..++.....+... .++.....||.+++.
T Consensus 145 ~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY 223 (335)
T PF08569_consen 145 DMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY 223 (335)
T ss_dssp HHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred HHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 445555565 4444566666677778888999999999999999999998766554444444 467788999999999
Q ss_pred HHHHHHHHHHHHHHcCCcc
Q 021251 164 DVREAALRGLLELAREKAD 182 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~~ 182 (315)
-.+.+++..|+.|..+...
T Consensus 224 vtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp HHHHHHHHHHHHHHHSGGG
T ss_pred EeehhhHHHHHHHHHchhH
Confidence 9999999999999877653
No 178
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=7.3 Score=39.66 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=76.5
Q ss_pred HHHcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 18 LHSIGGLAPLLGYL----KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL----~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
+-+.|-+..++..| .++++.+|..|+..|++.+..-| ..+.+++ .+..+|.-|..+.+.+|.-.|+.+|-+
T Consensus 250 l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P---~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 250 LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAP---DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCc---HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33556666665443 24788999999999999998755 3444442 455566666655677888888777777
Q ss_pred hhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 92 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 92 LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
+.-.-..-.-.++-.+..--+..+..+.+++++..|..++..|..
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 653221111111122334456777888999999999999999875
No 179
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.91 E-value=15 Score=41.02 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=95.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC-
Q 021251 29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN- 107 (315)
Q Consensus 29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g- 107 (315)
+-.++.....|..++.+|..+.+-.+.==..++..-+-+.++.+ .+-+...|..|.-.|=+|+++ +.+.+.|
T Consensus 704 ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~ 776 (1176)
T KOG1248|consen 704 DSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGAI-----QSSLDDGN 776 (1176)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHH-----Hhhhcccc
Confidence 34445677889999999999988655111223333333444444 456788888888888777741 1222212
Q ss_pred ---------cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 108 ---------GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 108 ---------Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
-++.|...+-.+...+......++++++.+.....+.-.-.+++..+..+|.+....++..|+.++..++.
T Consensus 777 e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 777 EPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred cchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 23444444444555555555778888887654443333344677888888899999999999999999998
Q ss_pred CCcc
Q 021251 179 EKAD 182 (315)
Q Consensus 179 ~~~~ 182 (315)
..+.
T Consensus 857 ~~pe 860 (1176)
T KOG1248|consen 857 KFPE 860 (1176)
T ss_pred cCCH
Confidence 8873
No 180
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.76 E-value=4.6 Score=35.62 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=55.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN---Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
|+.++++.-+++..+|..|..+|+.+.+. ||.. .+|.||.|. +|++..+|.+|...+..+...++.-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALE-TSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhh-CCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 56777888889999999999999977764 5642 589999995 56899999999999999988776543
No 181
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.62 E-value=5.1 Score=42.52 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=80.7
Q ss_pred HHHhhcC----CCHHHHHHHHHHHHHH---hhC---CHHHHHHHHhcCCHHHHHHcc-cCCCCHHHHHHHHHHhhhhhcC
Q 021251 27 LLGYLKN----SHANIRAKAGEVVTTI---VQN---NPRSQQLVMEANGLEPLLSNF-ASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 27 Ll~lL~s----~~~~vR~~Aa~~Lgti---aqN---Np~~Q~~vle~G~l~~Ll~LL-~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
++++|.. +++..|.+-..++-++ +|. +.++|+...+.-.+=-.|.+. .-|++++.-++|..+|+.++.+
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~ 340 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSH 340 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence 4455543 5788999888888755 442 223344333333332233332 1245678888888888888877
Q ss_pred Cchh------------------HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 021251 96 NKPG------------------IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH 156 (315)
Q Consensus 96 ~~~~------------------~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~ 156 (315)
.+.. .+++..+ ...++..|+ ..|..+++||+.+|..+|+. ++... +|.-|+.
T Consensus 341 rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~elLq 411 (938)
T KOG1077|consen 341 RETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAELLQ 411 (938)
T ss_pred ccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHHHHH
Confidence 6653 2233222 677888888 57899999999999999964 22222 2334555
Q ss_pred hhCCCChHHHHH
Q 021251 157 LASSEDPDVREA 168 (315)
Q Consensus 157 LL~s~d~~v~e~ 168 (315)
.|.+-+..+||.
T Consensus 412 YL~tAd~siree 423 (938)
T KOG1077|consen 412 YLETADYSIREE 423 (938)
T ss_pred HHhhcchHHHHH
Confidence 555555555543
No 182
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=4 Score=42.16 Aligned_cols=117 Identities=19% Similarity=0.169 Sum_probs=80.0
Q ss_pred cCChHHHHHhhcCCCH-HHHHHHHHHHHHHhhC--CHHHHHHHHhcC-CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 21 IGGLAPLLGYLKNSHA-NIRAKAGEVVTTIVQN--NPRSQQLVMEAN-GLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~-~vR~~Aa~~LgtiaqN--Np~~Q~~vle~G-~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
.|.+..++.++.+... .++..|..+-+.+..- .+...+. ++.| .+..|.+.+.++ .+..|..++--|.-+-+..
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhC
Confidence 4455666677755444 6888887775433321 1111111 3444 467777777764 7899999999999887665
Q ss_pred chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251 97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~ 140 (315)
+. +-......-+..|...|+..+..+-.++++++++++.+..+
T Consensus 368 p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 368 PG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 54 33333456788999999999999999999999999976443
No 183
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=89.25 E-value=4.5 Score=37.94 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=94.8
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccC
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS 75 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~-----~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~s 75 (315)
|.-|+-+..+.|....|.+....-.|..+|+.. .+.+|-.+..+||.+++. ++++...+++.+.+|..++.++.
T Consensus 71 LaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~ 150 (262)
T PF04078_consen 71 LALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF 150 (262)
T ss_dssp HHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh
Confidence 345666777888889999998666667888652 467999999999999984 68888889999999999999987
Q ss_pred CCCHHHHHHHHHHhhhhhcCCchh------HHHHHH-cCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 021251 76 DPDVTVRTKALGAISSLIRHNKPG------IEAFRL-ANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSVVD 146 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~LiR~~~~~------~~~f~~-~gGl~~L~~-lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~ 146 (315)
+ ++--|+-|.|-+-.+.-+...- .+.|.. ...+..++. +...+++++-+.....-..|.. ++..++.+.
T Consensus 151 G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~ 227 (262)
T PF04078_consen 151 G-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALR 227 (262)
T ss_dssp S--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred c-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence 5 7788899999988877553221 122221 223333332 3344667777777776666664 344444333
No 184
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=11 Score=40.63 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=100.0
Q ss_pred HhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-------C------CHHHHHHcc
Q 021251 7 EHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-------N------GLEPLLSNF 73 (315)
Q Consensus 7 dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-------G------~l~~Ll~LL 73 (315)
+|..-+|.-++=.++-++.-|+.++.++.. +...=..++-+++.+|+++++-|.=+ . -|..+=+-|
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L 117 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL 117 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh
Confidence 344445555555666667777766654322 55555667778888888887765422 1 112222222
Q ss_pred cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 021251 74 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 153 (315)
Q Consensus 74 ~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~ 153 (315)
.|++.-+|..|+.++|+| |- +...-+ .+-.+.++.....+.+|.-|+.+|-.|-+-+++.+..++ +.
T Consensus 118 -~DpN~LiRasALRvlSsI-Rv--p~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~ 184 (968)
T KOG1060|consen 118 -KDPNQLIRASALRVLSSI-RV--PMIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EV 184 (968)
T ss_pred -cCCcHHHHHHHHHHHHhc-ch--hhHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HH
Confidence 357889999999999996 32 111111 233456666778899999999999999887777665443 34
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 154 MLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 154 Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+-.||...++-|.-.|+.|.-.+|-+
T Consensus 185 I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 185 IKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHHHhcCCCCcchhHHHHHHHHhchh
Confidence 55566667777777777766554433
No 185
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.45 E-value=1.2 Score=38.23 Aligned_cols=101 Identities=19% Similarity=0.115 Sum_probs=74.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHccc-CCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcC
Q 021251 30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN 107 (315)
Q Consensus 30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~-sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 107 (315)
++...+.+-...|..+++.+-+--|.+-..++.. |.++.++.+.. ...+..+...++-+|+.-|-+ +. ...|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~-~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KS-CRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HH-HHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HH-HHHHHHHH
Confidence 3444344466788999999999998887777755 66788888877 235789999999999988754 33 45666779
Q ss_pred cHHHHHHhhc-CCCHH-HHHHHHHHHH
Q 021251 108 GYAALRDALG-SESVK-FQRKALNLIQ 132 (315)
Q Consensus 108 Gl~~L~~lL~-s~~~k-l~~kA~~lLs 132 (315)
|++.|...++ +++.+ +|..|+-.|.
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 9999999995 56677 8888876654
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.22 E-value=15 Score=37.24 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=94.3
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 25 APLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 25 ~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
..++..|.. .+..+|+.|..+|+.++.|.|.--..-.+ =++.+++..-. ++.+.+-.-|.-+.+.++..+.+-+
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~-ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAK-DSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHh-CCchhHHHHHHHHHHHHHHhhCchh---
Confidence 344556654 78889999999999999987753222122 35677777744 4555555555555554444333322
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
-+..+..++.+.|.+.-.-++..+..++.. -..+.+... .+.|.+++--.+.+..+|..|.-+|..++..-
T Consensus 407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 407 ----CIVNISPLILTADEPRAVAVIKMLTKLFER--LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred ----HHHHHhhHHhcCcchHHHHHHHHHHHHHhh--cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 233455666666766666666677777754 223333332 78888999999999999999999998887543
No 187
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.08 E-value=2.7 Score=45.57 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=105.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
.+|.|++...+....+|..=..+++.+-.|-|+ +.+... ..+|.|++-|.- +|..+|+.++..|.-+...++.-+
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence 356666666666777888889999999998886 333332 567888888865 688999999999998887777655
Q ss_pred HHHHHcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251 101 EAFRLANGYAALRDALGSES---VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG 172 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~---~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a 172 (315)
..-+. --++.+..+-.+++ .-+|.-|+.++..|...-|...-.--.-.+++.|+..|..+.--+|+.|.++
T Consensus 945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 54432 34556666555555 7899999999999997555443233344577888888888777888888754
No 188
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=7.3 Score=43.01 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=98.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.+..|+.-|++.+..|||.||+-+|.+++.-|.. +....+...+.++..-.+...=-.|..||+-+++-.--....
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 4566667778899999999999999999988832 333456666776654334455558888888887754322233
Q ss_pred HHHcCcHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh-----CCCChHHHHHH
Q 021251 103 FRLANGYAALRDALGS--------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA-----SSEDPDVREAA 169 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s--------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL-----~s~d~~v~e~a 169 (315)
+. ..+++++..|.= ....+|-.||+++-++...+... .+. +++..|...| =..+..+|..|
T Consensus 418 l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l~--p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 418 LE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DLK--PVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hhh--HHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 32 456777776642 34779999999999998765332 111 2444443322 22577899999
Q ss_pred HHHHHHHHcC
Q 021251 170 LRGLLELARE 179 (315)
Q Consensus 170 L~aL~~L~~~ 179 (315)
..|+...+.-
T Consensus 492 sAAlqE~VGR 501 (1133)
T KOG1943|consen 492 SAALQENVGR 501 (1133)
T ss_pred HHHHHHHhcc
Confidence 9899888755
No 189
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=87.71 E-value=28 Score=33.71 Aligned_cols=173 Identities=16% Similarity=0.253 Sum_probs=119.2
Q ss_pred HHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc----HHHHHHhhcCCC
Q 021251 45 VVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG----YAALRDALGSES 120 (315)
Q Consensus 45 ~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG----l~~L~~lL~s~~ 120 (315)
.+-.|.. .+..-+.+++..-+......++. +.-.+.+-|+.....+.+.|+.....|+..+- ...--.+|.+.+
T Consensus 148 mlrEcir-he~LakiiL~s~~~~~FF~~vq~-p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N 225 (342)
T KOG1566|consen 148 MLRECIR-HEFLAKIILESTNFEKFFLYVQL-PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN 225 (342)
T ss_pred HHHHHHh-hHHHHHHHHcchhHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc
Confidence 3334443 34455666666666666555554 35577888888888888877887788876654 334666788999
Q ss_pred HHHHHHHHHHHHHHhhcCCcch---HHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chhhhhhhhhHHHH
Q 021251 121 VKFQRKALNLIQYLLNENASDC---SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEKL 195 (315)
Q Consensus 121 ~kl~~kA~~lLs~Ll~~~~~~~---~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~~~c~~~~~~~L 195 (315)
--.++-+..++.+++...+... .-+.+..-++.++.+|+.+..++|-.|.....-.+..-. +.+..|+..-..+|
T Consensus 226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KL 305 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKL 305 (342)
T ss_pred eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHH
Confidence 8899999999999886543322 223344678889999999999999999988887765433 55678878888888
Q ss_pred HHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 021251 196 KQLLGERIKGISLMSPEDLGAAREERHLV 224 (315)
Q Consensus 196 ~~~L~~~~~~i~~~~~ed~~~~~eE~~~~ 224 (315)
.+.+..--.+.. +| +-+.+|+.++
T Consensus 306 l~~l~~f~~d~~----~D-eqF~dEk~~~ 329 (342)
T KOG1566|consen 306 LELLHDFHTDRT----ED-EQFLDEKAYL 329 (342)
T ss_pred HHHHHHhCCCCC----ch-hhhhhhHHHH
Confidence 887766544432 23 4566666555
No 190
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.59 E-value=36 Score=37.05 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=114.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc
Q 021251 30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV-MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 108 (315)
Q Consensus 30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~v-le~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 108 (315)
.+.+.+-.=|..|+..+--...+.. .... -..|.+-.++.+...|.+..|...|+-.|--|+.........|. .+-
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v 337 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNV 337 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hhh
Confidence 4455667777788887777766544 1111 23366778888888888889999999999888887777655554 377
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhh
Q 021251 109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL 188 (315)
Q Consensus 109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~ 188 (315)
++.+.+.+......++.-+..++-.++...+ -..+.+.++..+++.++.++..+...+....+.... ...|
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~-~~~~- 408 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP-KTVE- 408 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-cCcc-
Confidence 8889999988888888777777766665322 225778889999999999999999888888777654 2223
Q ss_pred hhhHHHHHHHHHHHHhhcc
Q 021251 189 AEDNEKLKQLLGERIKGIS 207 (315)
Q Consensus 189 ~~~~~~L~~~L~~~~~~i~ 207 (315)
...+.....+-+..+.
T Consensus 409 ---~~t~~~l~p~~~~~~~ 424 (815)
T KOG1820|consen 409 ---KETVKTLVPHLIKHIN 424 (815)
T ss_pred ---hhhHHHHhHHHhhhcc
Confidence 2333444445555554
No 191
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.56 E-value=14 Score=37.79 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=77.7
Q ss_pred HhhcC--CCChhH--HHHcCChHHHHHhhcC-------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC
Q 021251 7 EHVES--IDMAND--LHSIGGLAPLLGYLKN-------SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 75 (315)
Q Consensus 7 dLven--iDnA~d--~~~~Ggl~~Ll~lL~s-------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s 75 (315)
.+|.+ |+-++. +.+.=|++.+=++|.+ ++.-.|.-+..+++..|+. |+...+=-=-+.||.|+..+..
T Consensus 37 K~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~v~~IP~llev~~~ 115 (698)
T KOG2611|consen 37 KFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEMVSRIPLLLEVMSK 115 (698)
T ss_pred HHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHHHHhhhHHHHHHHh
Confidence 34444 444443 5666679988899975 2456889999999999984 5542211111468999988865
Q ss_pred CCCHH------HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC----CHHHHHHHHHHHHH
Q 021251 76 DPDVT------VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE----SVKFQRKALNLIQY 133 (315)
Q Consensus 76 d~~~~------vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~----~~kl~~kA~~lLs~ 133 (315)
..++. +...+-.+|-.++ +++++....+..||++.+.+.-.-+ |..+..+...++..
T Consensus 116 ~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~ 182 (698)
T KOG2611|consen 116 GIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVS 182 (698)
T ss_pred cCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence 32222 3333333333333 4488888999999999999875433 45555555544443
No 192
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.49 E-value=6.6 Score=36.76 Aligned_cols=140 Identities=21% Similarity=0.282 Sum_probs=82.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL 105 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 105 (315)
|=.+|.+++..+|.+|..+|+.+...-|.. .+...-+..|+..+.+- .|.....-|+.++..|++........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence 336899999999999999999998876632 23333355566554431 23444444566666666543321111
Q ss_pred cCcHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCC-CChHHHHHHHHHHHHHH
Q 021251 106 ANGYAALRDALG-----SESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASS-EDPDVREAALRGLLELA 177 (315)
Q Consensus 106 ~gGl~~L~~lL~-----s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~ 177 (315)
+..++..+.+ +-..+.|..+-.++..|+... ...+.++ +++..+++++.. .|+.-.-.+...+..+.
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2233333332 233677888888888888653 2333444 578888888877 34444444444444443
No 193
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.38 E-value=5.2 Score=38.85 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=61.9
Q ss_pred cHHHHHHhhcCCCHH-HHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 108 GYAALRDALGSESVK-FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 108 Gl~~L~~lL~s~~~k-l~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
-+..|.+.++++.+. ...-||.=|.++....|+.+..+.+.|+=..++.|+.++|++++-+|+.|+..+.+.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 456788888886644 666788888889988999999999999999999999999999999999999877654
No 194
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.29 E-value=6.9 Score=40.49 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=94.7
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CC
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DP 77 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~----~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~ 77 (315)
-+|..+.-+.--|.+|+++.|+..|..+..++. .++......+...+-...- +-...+...++.....+..- -.
T Consensus 105 k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~~~~~~fV~~~a~~V~~~~~ 183 (713)
T KOG2999|consen 105 KELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWESVSNDFVVSMASYVNAKRE 183 (713)
T ss_pred HHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeeeecccHHHHHHHHHHhhhhh
Confidence 355666667778999999999999999998753 4555555555544433211 11111222233333333211 12
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 142 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~ 142 (315)
+..+-..|+.-+-+++-+...-.+.+.+.--+.-|++.++..+..++..|..++..+...-++++
T Consensus 184 ~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~~~~ 248 (713)
T KOG2999|consen 184 DANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAPDDK 248 (713)
T ss_pred cccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCChHH
Confidence 44566778888888888877767777788889999999999999999999999999988766654
No 195
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=87.00 E-value=29 Score=33.19 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=75.3
Q ss_pred CChhHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHH---hhCCHHHHHHHHhcCCHHHHHHc--ccCC---------
Q 021251 13 DMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTI---VQNNPRSQQLVMEANGLEPLLSN--FASD--------- 76 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s--~~~~vR~~Aa~~Lgti---aqNNp~~Q~~vle~G~l~~Ll~L--L~sd--------- 76 (315)
+.+..+.+. ..|+|.+.+.. ....+|..++.++|.+ +.+.+..-...++ .+..++.. ++.+
T Consensus 121 ~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 345555553 45666777765 3456777888777754 3444433332222 23322221 2222
Q ss_pred CCHHHHHHHHHHhhhhhcCCchhH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 77 PDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 77 ~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
++..+...|+.+-+-|+..-+... ..+ -...++.|..+|.+++..+|.-|-.+|.-|..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 245789999999988887766521 222 23568999999999999999999988877653
No 196
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.87 E-value=5.3 Score=37.75 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCHHHHH-HcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-
Q 021251 64 NGLEPLL-SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD- 141 (315)
Q Consensus 64 G~l~~Ll-~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~- 141 (315)
+.+..|| .-+.+ .+..+|..|+-+++-.+--++.... .-++.+...++.++..++..|+.++.+++..+...
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455555 34455 5789999999999866554432222 23667888887789999999999999988654322
Q ss_pred hHH-------HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 142 CSV-------VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 142 ~~~-------l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+. .....+++.+.+.+.+.+.+++..|...++-|.-.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 111 123467888899999999999999999998876544
No 197
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=86.61 E-value=5.8 Score=35.48 Aligned_cols=128 Identities=11% Similarity=0.092 Sum_probs=81.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh----------------cCCHHHHHHcccCCC-----CHHHHHHHHHHh
Q 021251 31 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVME----------------ANGLEPLLSNFASDP-----DVTVRTKALGAI 89 (315)
Q Consensus 31 L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle----------------~G~l~~Ll~LL~sd~-----~~~vr~kAl~AL 89 (315)
+..+....--.++.+|+|++....-+ ..++. ...+..|+..|.... ...----..+.+
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 33455556677899999999865443 33332 236788888886621 123334567888
Q ss_pred hhhhcCCchhHHHHHHc--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCC
Q 021251 90 SSLIRHNKPGIEAFRLA--NG--YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASS 160 (315)
Q Consensus 90 S~LiR~~~~~~~~f~~~--gG--l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s 160 (315)
+|+.+. +.+.+.|+.. +. +..|+..+.+.+.--|.=++.+|.+.+-+.......+.+ .++++.|+--|..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 998875 6777788743 33 566777777786666666788999999765544333432 3666666655544
No 198
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.47 E-value=16 Score=39.77 Aligned_cols=228 Identities=14% Similarity=0.196 Sum_probs=130.3
Q ss_pred ChHHHHHh-h-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---CHHHHHHHHHHhhhhhcCCc
Q 021251 23 GLAPLLGY-L-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 23 gl~~Ll~l-L-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~~~vr~kAl~ALS~LiR~~~ 97 (315)
..|.++.+ + .++++-|-..+-.++-.+.| +..++....+ -.+|.|++.+.... ......-|+--|.+++|+.+
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 34444443 3 45788888888888888888 3445554433 37899999987642 25667788999999999987
Q ss_pred hhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-hcC-----chHHHHHhhCCCChHHH-HHH
Q 021251 98 PGIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVD-KLG-----FPRLMLHLASSEDPDVR-EAA 169 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~l-L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g-----~v~~Lv~LL~s~d~~v~-e~a 169 (315)
+....-+-.-.++++.++ |+++|..+.+.+-.+|++++....+...... +.| ++..+-.||.....+.- .-+
T Consensus 650 ~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~V 729 (1005)
T KOG2274|consen 650 SPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFV 729 (1005)
T ss_pred CCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHH
Confidence 765444444678888887 6778899999999999999975433222111 222 12333345544333322 233
Q ss_pred HHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCcccccceeecCCC
Q 021251 170 LRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGE 249 (315)
Q Consensus 170 L~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~~~~~~~~~~~ 249 (315)
=+.+..|.++-..-. ...+-+.|+.-+.++.+ .|- .+=+-.++--+-+-.++++.++.+= |.-|||+
T Consensus 730 G~lV~tLit~a~~el-------~~n~d~IL~Avisrmq~--ae~---lsviQsLi~VfahL~~t~~~~~l~F-L~Slp~~ 796 (1005)
T KOG2274|consen 730 GPLVLTLITHASSEL-------GPNLDQILRAVISRLQQ--AET---LSVIQSLIMVFAHLVHTDLDQLLNF-LSSLPGP 796 (1005)
T ss_pred hHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHH--hhh---HHHHHHHHHHHHHHhhCCHHHHHHH-HHhCCCC
Confidence 345556665543222 22223334433333331 111 1112222233334455666666542 4558888
Q ss_pred CCCCccccccccCChhhhhccC
Q 021251 250 DAPPPDVASKHFEPPLRAWAAN 271 (315)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ 271 (315)
+--| -||=-.|-|..+
T Consensus 797 ~g~~------AlefVMteW~sr 812 (1005)
T KOG2274|consen 797 TGEP------ALEFVMTEWTSR 812 (1005)
T ss_pred CCCc------HHHHHHHHHHhh
Confidence 8644 244456666543
No 199
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.23 E-value=27 Score=37.97 Aligned_cols=171 Identities=19% Similarity=0.148 Sum_probs=114.6
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---C
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---D 78 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~ 78 (315)
|.+|..++|+-+-+.-+...|.+...+.+|++.++-|--.|...+.++|.- ....++|.|...-.+.+ .
T Consensus 748 L~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL~e~Y~s~k~k~~ 819 (982)
T KOG4653|consen 748 LQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDLSEEYLSEKKKLQ 819 (982)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHHHHHHHhcccCCC
Confidence 457888899887777778888899999999999988888888888777753 44567888887543321 1
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHh
Q 021251 79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHL 157 (315)
Q Consensus 79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~~l~~~g~v~~Lv~L 157 (315)
...+.+.=-||-.+++--.+....+.. --+...+....+++...|.-++..++.|++-.... .+.+. .++..++.+
T Consensus 820 ~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l 896 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSL 896 (982)
T ss_pred ccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHH
Confidence 234445556666666543333333322 33445556667788999999999999998642211 11222 245566667
Q ss_pred hCC-CChHHHHHHHHHHHHHHcCCcch
Q 021251 158 ASS-EDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 158 L~s-~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
.+. +...+|..|...+..+..+.-..
T Consensus 897 ~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred HccCCchhhHHHHHHHHHHHHhccchh
Confidence 776 45678889988888887766433
No 200
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=86.22 E-value=12 Score=35.38 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.6
Q ss_pred ChHHHHHhh--cCCCHHHHHHHHHHHHHHh
Q 021251 23 GLAPLLGYL--KNSHANIRAKAGEVVTTIV 50 (315)
Q Consensus 23 gl~~Ll~lL--~s~~~~vR~~Aa~~Lgtia 50 (315)
++++++..| .+..+-||..|+.++|.+-
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~ 97 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIG 97 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhc
Confidence 688888766 4578889999999999887
No 201
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=24 Score=40.59 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=96.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
+|-|.+|=-.|+..||..-..+..+++++....-+..+. .++.-|+.-+.+ ..=-||..+-.||+-|+|+.+. ..|
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~--~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS-KEWRVREASCLALADLLQGRPF--DQV 1075 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCCh--HHH
Confidence 444555545689999999999999999975444333333 467667776664 4568999999999999999764 344
Q ss_pred HH--cCcHHHHHHhhcCCCHHHH---HHHHHHHHHHhhcCCc-----chHHHHhcCchHHHHH-hhCCCChHHHHHHHHH
Q 021251 104 RL--ANGYAALRDALGSESVKFQ---RKALNLIQYLLNENAS-----DCSVVDKLGFPRLMLH-LASSEDPDVREAALRG 172 (315)
Q Consensus 104 ~~--~gGl~~L~~lL~s~~~kl~---~kA~~lLs~Ll~~~~~-----~~~~l~~~g~v~~Lv~-LL~s~d~~v~e~aL~a 172 (315)
.+ -.-|..+.+.+.+=...+| .+++..|+.|+-.-.+ .-..+.+ -++|.|+. -+-+.=..+|.-++.+
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHH
Confidence 33 1356666676665334444 4667777776632111 1111111 12233221 1114456788999999
Q ss_pred HHHHHcCCcch
Q 021251 173 LLELAREKADG 183 (315)
Q Consensus 173 L~~L~~~~~~~ 183 (315)
+..|+++....
T Consensus 1155 l~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1155 LMDLAKSSGKE 1165 (1702)
T ss_pred HHHHHHhchhh
Confidence 99998887643
No 202
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.15 E-value=10 Score=35.61 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=87.7
Q ss_pred HHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCC---HHHHHHHHHHh
Q 021251 17 DLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD---VTVRTKALGAI 89 (315)
Q Consensus 17 d~~~~Ggl~~Ll~lL~s~~----~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~---~~vr~kAl~AL 89 (315)
-+.=.+.+|-++.-+.++. ...-..+|..|+.+|.++ +...+..++..+.+..- .+.-..+ +
T Consensus 106 l~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~v---~ 174 (262)
T PF14225_consen 106 LFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQV---V 174 (262)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHHH---H
Confidence 3344556666776666655 234456677888877532 34466677777665422 2222222 2
Q ss_pred hhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251 90 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA 169 (315)
Q Consensus 90 S~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a 169 (315)
+++...+-+.. ...-+..|+++|.....-+|.+++.+|..++..-+..+. ...+++..+.+++.++ ....|
T Consensus 175 ~~l~~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~---~~~eA 245 (262)
T PF14225_consen 175 SYLREAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD---LWMEA 245 (262)
T ss_pred HHHHHHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc---cHHHH
Confidence 33333332211 234567799999999999999999999999986554434 4446888999999774 44556
Q ss_pred HHHHHHHHcC
Q 021251 170 LRGLLELARE 179 (315)
Q Consensus 170 L~aL~~L~~~ 179 (315)
+..|-.+++-
T Consensus 246 L~VLd~~v~~ 255 (262)
T PF14225_consen 246 LEVLDEIVTR 255 (262)
T ss_pred HHHHHHHHhh
Confidence 6666555443
No 203
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.14 E-value=2.6 Score=33.15 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=57.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
.-.+.-|+++.+-+|..++..|+.|+.... .....-.+++..+...|+.+|..+.-.|.++|..|+...+..+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 345566778888999999999999998654 2233334677788889999999999999999999998776533
No 204
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.13 E-value=0.69 Score=44.71 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=85.7
Q ss_pred HcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhhCCHHHHH------------------------------HHHh--cC
Q 021251 20 SIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQNNPRSQQ------------------------------LVME--AN 64 (315)
Q Consensus 20 ~~Ggl~~Ll~lL~s---~~~~vR~~Aa~~LgtiaqNNp~~Q~------------------------------~vle--~G 64 (315)
-+|-+.+.++.|.. .+.+++..--.+=+++.||..+.-- .+.+ +.
T Consensus 277 ll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~ 356 (432)
T COG5231 277 LLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYE 356 (432)
T ss_pred hhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHH
Confidence 34545566665532 5788888877777777776433211 1111 24
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
++..|.+++++..+.+...-|..-|..++|-.|.+...+.+.||=..++.++.++|++++-.|+.++..+...
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 5677777777654444555677888889999999988888999999999999999999999999999887653
No 205
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.09 E-value=4.5 Score=42.97 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=79.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHhc--CCHHHHHHccc---CCCCHHHHHHHHHHhhhhhcCCc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEA--NGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~-vle~--G~l~~Ll~LL~---sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+..++.+|++++-.+|..-..+.||++..- .++- .+++ .-+..|+.++. +|+.+-+|.||+..+++++.-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 567788999999999999999999988642 1111 2331 12333444432 35788999999999999875321
Q ss_pred hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251 98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~ 140 (315)
.-.. ..+.-.....+.|+..+.-+|++|..+++.|+..+|.
T Consensus 379 k~~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 379 KTVG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred cccc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 1000 1223456678889999999999999999999977664
No 206
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.94 E-value=1.6 Score=47.26 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=98.1
Q ss_pred CChhHHHHcCChHHHHHhhcC--------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------CCHHHHHHcccC-
Q 021251 13 DMANDLHSIGGLAPLLGYLKN--------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA--------NGLEPLLSNFAS- 75 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s--------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--------G~l~~Ll~LL~s- 75 (315)
.-|++|.++||+..++.+..- +..++-..|..+|..+. --|.+|.++... .|+..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 568999999999999987753 23567778888886554 368899888743 477666665221
Q ss_pred -C-CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHH----HHHHHHHHHHhhcCCcchHHHHhc
Q 021251 76 -D-PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQ----RKALNLIQYLLNENASDCSVVDKL 148 (315)
Q Consensus 76 -d-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~----~kA~~lLs~Ll~~~~~~~~~l~~~ 148 (315)
+ -|++++..|+..|-|++-.-+...... +..+-++ .+.+.. .|..-+-..|. .-...+...
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~~ks~~le~~l~----~mw~~Vr~n 738 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAGTKSAKLEQVLR----QMWEAVRGN 738 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCCCchHHHHHHHH----HHHHHHhcC
Confidence 1 378999999999998876654332222 1111111 111111 11111111111 123455566
Q ss_pred CchHHHHHhhCCC-----ChHHHHHHHHHHHHHHcCCc
Q 021251 149 GFPRLMLHLASSE-----DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 149 g~v~~Lv~LL~s~-----d~~v~e~aL~aL~~L~~~~~ 181 (315)
+.|..|++||.-. -..+|..|.++|.-|+++..
T Consensus 739 dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 739 DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 8899999999752 34588999999999988864
No 207
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.89 E-value=2.8 Score=31.67 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=49.0
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGF 150 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~ 150 (315)
.+.|+||++++... +.+...+.+.+-++.++++... +...+|--|.+.|.-+. ...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis-~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS-STEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh-CCHHHHHHHHHcCC
Confidence 46799999999764 5566666667889999998775 55677777766666655 45667777777775
No 208
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.70 E-value=4.7 Score=41.14 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=102.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh----------cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVME----------ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle----------~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
++..+.||..|.-++.+....-| +..+.. .||-|.|+.+--.|++...|..|+-.++.+..+.+.-..
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~--~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls 83 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIE--KKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS 83 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhh--hhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 45678899999999988876544 244443 378888888855678999999999999999877653211
Q ss_pred HHHH-----------------cCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhCCCC
Q 021251 102 AFRL-----------------ANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASSED 162 (315)
Q Consensus 102 ~f~~-----------------~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~-~~g~v~~Lv~LL~s~d 162 (315)
.-.. ...+.+|+-+|.. ..+.+...+...|..|.+..|.++-.+- -..++.++-.++++.|
T Consensus 84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d 163 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD 163 (728)
T ss_pred HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 1111 1123344444543 3466777778888999988777653221 1245666777889999
Q ss_pred hHHHHHHHHHHHHHHcCCc
Q 021251 163 PDVREAALRGLLELAREKA 181 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~ 181 (315)
.+++-.++..+..|+....
T Consensus 164 ~~v~vs~l~~~~~~v~t~~ 182 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHA 182 (728)
T ss_pred CChhhHHHHHHHHHHhcCC
Confidence 9999999999999987764
No 209
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=85.50 E-value=3 Score=35.33 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.3
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHH-HHHcccCC--CCHHHHHHHHHHhhhhhcC
Q 021251 23 GLAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFASD--PDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 23 gl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~-Ll~LL~sd--~~~~vr~kAl~ALS~LiR~ 95 (315)
++..|.+=|. +.++.+..+|..++-++++|. +.++..|...+.+.- |++++... .+..|+.+.+..|-.....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 4556665555 468999999999999999996 688888888899986 99998632 4568999988877776544
No 210
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.38 E-value=7.4 Score=31.22 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhC
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~Lv~LL~ 159 (315)
.-.+.+-.|+-+++.++.... ..+..|..-|.+.+.+++.+|+.+|-+++.+... ....+....++..++.+..
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~ 90 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDK 90 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhc
Confidence 335666777777766533222 3556777778889999999999999999986543 3455656667766665411
Q ss_pred ------CCChHHHHHHHHHHHHHH
Q 021251 160 ------SEDPDVREAALRGLLELA 177 (315)
Q Consensus 160 ------s~d~~v~e~aL~aL~~L~ 177 (315)
..+..+|++++..+...+
T Consensus 91 ~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 91 SKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccccCCCChHHHHHHHHHHHHHh
Confidence 136789999988776543
No 211
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=85.36 E-value=2.1 Score=38.18 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHcCChHHHHHhhcC---CC---------------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCC
Q 021251 17 DLHSIGGLAPLLGYLKN---SH---------------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD 78 (315)
Q Consensus 17 d~~~~Ggl~~Ll~lL~s---~~---------------~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~ 78 (315)
-|.++|.+..++.+|.. .. ..+-..+..+|...+.+|++.|..+.++ ++-++..+... .
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~ 114 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-Q 114 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-C
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-h
Confidence 45668889999888864 22 3677889999999999999999999988 44333333321 2
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
...-.-++-++..+.++++.....+.+.. +..++.++.... -+.+-+.+|+.|+..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp H-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence 22224567788889999998887776554 888888887633 344456667777653
No 212
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.91 E-value=4.9 Score=32.11 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHH-hcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHh
Q 021251 37 NIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 115 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~l 115 (315)
+||.+|..=|-+=-.++=-+-..+. +...+..|+.-+... +......++--|+.++++ +.+...+.+.|+...|.++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence 6888887766433333322333344 457788999998875 455788999999998886 6666788888999998777
Q ss_pred hcCCCHHHHHHHHHHH
Q 021251 116 LGSESVKFQRKALNLI 131 (315)
Q Consensus 116 L~s~~~kl~~kA~~lL 131 (315)
-..-++.++...-.++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6656677776655444
No 213
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=84.87 E-value=4.9 Score=32.66 Aligned_cols=68 Identities=29% Similarity=0.362 Sum_probs=46.4
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 24 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 24 l~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
+|.+...|. +..+++|..+-.+++.++...+-. +.+++. .+..+++-... ......++.+|..++.++
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~-l~~~i~~~~~~---~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNA-LMESILKNWTQ---ETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHH-HHHHHHhcccc---chhHHHHHHHHHHHHHcc
Confidence 677778888 788999999999999999876633 333322 23333333222 222578999999999776
No 214
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=5.5 Score=38.38 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=77.3
Q ss_pred HHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH--HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251 67 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR--LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 144 (315)
Q Consensus 67 ~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~ 144 (315)
.-|+.++. +.++.||..|+--+.+++-. ..+.|. ..--++.+.+++...++ -+.|++++.++.+ ++..+.+
T Consensus 6 ~elv~ll~-~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLH-SLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHHhc-cCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHH
Confidence 34666665 46789999999888888755 223332 22345667777766555 7788899999986 4556677
Q ss_pred HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+.+. +++.++..+-.+...+-+....+|.+++++..
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence 7776 88888888888877888888888888887765
No 215
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=84.29 E-value=10 Score=33.65 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=78.7
Q ss_pred ChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-------------------CHHHHHHcccCCCCHHHH
Q 021251 23 GLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN-------------------GLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 23 gl~~Ll~-lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G-------------------~l~~Ll~LL~sd~~~~vr 82 (315)
.-+.|+. ++.++++.+|..|+.+++.+-.+....-.+.-+.. .-..|+..|..+.+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4455664 45789999999999999998876422211111111 223466677777788888
Q ss_pred HHHHHHhhhhhcCCchhHH--HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 021251 83 TKALGAISSLIRHNKPGIE--AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 139 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~--~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~ 139 (315)
...+-+++.++.+.+...- .++ ..-+..+...+.+.|..++.-++.++..|+...+
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 8999999999988765421 111 1234556666777899999999999999987543
No 216
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=83.30 E-value=7.6 Score=42.17 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=79.4
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCC
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD 78 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~----~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~ 78 (315)
|.+++++++.+|...+... -+|.|+..|..++ +.+...|+.+|.++..|-|.=-...+-+-++|++.++.-++.|
T Consensus 595 d~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD 673 (1005)
T KOG2274|consen 595 DLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDD 673 (1005)
T ss_pred HHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCC
Confidence 4566777777777766665 5999999998876 8899999999999999854322233334489999999877778
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251 79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYA 110 (315)
Q Consensus 79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~ 110 (315)
..+-..+--+++.++-...+-....-..+|+.
T Consensus 674 ~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 674 HETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred hHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 88889999999999877655444444455554
No 217
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=83.04 E-value=21 Score=34.32 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=92.7
Q ss_pred HHHHHHhcCCHHHHHHcccC------C----------------CCHHHHHHHHHHhhhhhcCCchhH-------------
Q 021251 56 SQQLVMEANGLEPLLSNFAS------D----------------PDVTVRTKALGAISSLIRHNKPGI------------- 100 (315)
Q Consensus 56 ~Q~~vle~G~l~~Ll~LL~s------d----------------~~~~vr~kAl~ALS~LiR~~~~~~------------- 100 (315)
+|..+.+.|.+|.|=+++++ . ++..+|+.-+-.|-++|.++....
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 47888999999998888753 1 223688889999999988542211
Q ss_pred ------HHHH--HcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCc--chHHHHhcCchHHHHHhhCCC---ChHH
Q 021251 101 ------EAFR--LANGYAALRDALGS--ESVKFQRKALNLIQYLLNENAS--DCSVVDKLGFPRLMLHLASSE---DPDV 165 (315)
Q Consensus 101 ------~~f~--~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~--~~~~l~~~g~v~~Lv~LL~s~---d~~v 165 (315)
.... +.|-+.-+++.+.. .+.+.+-.-+.++.+++.+.+. .+..+.+.|+++.++..+-++ +..+
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence 0111 23345556666654 3578888888999999987655 556788999999999977664 4568
Q ss_pred HHHHHHHHHHHHcCCcch
Q 021251 166 REAALRGLLELAREKADG 183 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~~~~ 183 (315)
.+-+.-.|+.|.+.+...
T Consensus 161 ~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 161 LQSNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHHHCCCHHH
Confidence 899999999999998643
No 218
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.64 E-value=26 Score=38.33 Aligned_cols=117 Identities=24% Similarity=0.203 Sum_probs=88.0
Q ss_pred CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251 64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 141 (315)
Q Consensus 64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~ 141 (315)
..+|.|++.+.+ .+..+|..-+-|||..+.|-| .+ .+. + ..-+|.|+++|+-+|..+|..+...|..++...+..
T Consensus 867 ~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP-~~-vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFET-APGSQKHNYLEALSHVLTNVP-KQ-VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCC-HH-hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 578999999884 466889999999999988544 32 222 1 346789999999999999999999999988765443
Q ss_pred hHHHHhcCchHHHHHhhCCCC---hHHHHHHHHHHHHHHcCCcchh
Q 021251 142 CSVVDKLGFPRLMLHLASSED---PDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 142 ~~~l~~~g~v~~Lv~LL~s~d---~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
...-.+ -+|+.+..+=.+.+ ..+|+.|+.+|..|.+--|...
T Consensus 944 ~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 944 QTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred chHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 222111 46788887777655 5699999999999999666543
No 219
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.19 E-value=8.2 Score=41.18 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=92.5
Q ss_pred HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh---hhh
Q 021251 17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS---SLI 93 (315)
Q Consensus 17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS---~Li 93 (315)
.+.+..+++-+-.++-.+++-+|..|+..+.|+.-..--.-..+.++..-.++|.+.....++..+..+..|+. .++
T Consensus 579 ~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~ 658 (748)
T KOG4151|consen 579 KILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVV 658 (748)
T ss_pred HHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcc
Confidence 36665566665566677889999999999999987544444445554333345555433345555555555544 444
Q ss_pred cCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251 94 RHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 173 (315)
Q Consensus 94 R~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL 173 (315)
.++-+. ......+..+++.++.+.+..+|.+.+..+.++..........+.+....+-+..+-.......++.+...|
T Consensus 659 ~n~c~~--~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l 736 (748)
T KOG4151|consen 659 ENHCSR--ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCL 736 (748)
T ss_pred hhhhhh--HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence 444332 223457999999999999999999998888885543222233344434444443333333444444444333
No 220
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.04 E-value=5.7 Score=41.44 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=68.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
|.+..+++-+.+.+..||.+.+++|+.++.+--++ +.++-.|.+.+|.+-+- |....||..|+.+||.+-.- ....+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~-~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEM-ELNEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhc-cCChH
Confidence 34566677778899999999999999998765554 45667778888877654 34679999999999986421 22222
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHH
Q 021251 102 AFRLANGYAALRDALGS-ESVKFQRKAL 128 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s-~~~kl~~kA~ 128 (315)
.++ ...|+.+++. ++..+|+-|+
T Consensus 168 n~~----~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 168 NRI----VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HHH----HHHHHHHHhcCcHHHHHHHHH
Confidence 232 2256666665 3466776554
No 221
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.79 E-value=6 Score=42.18 Aligned_cols=140 Identities=15% Similarity=0.194 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-H-cCcHHHHHHhhc
Q 021251 40 AKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-L-ANGYAALRDALG 117 (315)
Q Consensus 40 ~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~-~gGl~~L~~lL~ 117 (315)
+.+..++.|++.-+...++.+++.-+++.+=.++. +.++..++.++-.++||.-+..- +..|+ + ..|++.....+.
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~-~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWSPLL-YERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHH-HHHHhhccccCchHHHHHHH
Confidence 34555566788877778888888877766444433 45789999999999999876443 44444 4 578898888888
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 118 SESVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 118 s~~~kl~~kA~~lLs~Ll~~~~~~~~-~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
..+.++...++.++..++......+. ...-......++.++.+++..+|...+...+++.....
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ 702 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF 702 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH
Confidence 88899999999888877766555555 44445778888999999999999888877777655443
No 222
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=81.70 E-value=7.3 Score=40.60 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=68.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-----------CCHHHHHHcccCC--------------------CCHH
Q 021251 32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-----------NGLEPLLSNFASD--------------------PDVT 80 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-----------G~l~~Ll~LL~sd--------------------~~~~ 80 (315)
+.+.-+.+..+..+|+.+..+.|.+++..++. .+.-.++.+|..+ .+.-
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~i 502 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNI 502 (898)
T ss_pred hcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhH
Confidence 33556677777777777777777777665532 2223344454432 1456
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 135 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll 135 (315)
||..|+.|||-..-+.. +.|.......+|.++|...|..+|.+|.+++.++=
T Consensus 503 vRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 503 VRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 88889999987655432 23333445678999999999999999999999885
No 223
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=81.68 E-value=35 Score=36.52 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=75.7
Q ss_pred HhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcch--HHHHhcCchHHHHHhhCCCCh-
Q 021251 88 AISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDC--SVVDKLGFPRLMLHLASSEDP- 163 (315)
Q Consensus 88 ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~--~~l~~~g~v~~Lv~LL~s~d~- 163 (315)
+|.+++-.++.....|++.||..++..++.. +...++.++...+.+++...+... ..+....+ ..+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 5567777788888999999999999999987 458999999999999986542221 11111121 122224555444
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhcc
Q 021251 164 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGIS 207 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~ 207 (315)
+.-..|...|..+..++.....+.+ -....+.+.+.+..+.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~---r~~~~~~l~e~i~~~~ 613 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVF---RNSVNELLVEAISRWL 613 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccc---hHHHHHHHHHHhhccC
Confidence 7778888889888888765332211 2333455555555444
No 224
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=81.03 E-value=21 Score=31.89 Aligned_cols=101 Identities=9% Similarity=-0.056 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHH---------------HcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhcC
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFR---------------LANGYAALRDALGS------ESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~---------------~~gGl~~L~~lL~s------~~~kl~~kA~~lLs~Ll~~~ 138 (315)
...-.+...|||++|....+...+- ....+..|++++.. +...-....+.++.++.+ .
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~ 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-L 88 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-C
Confidence 4555677778888876554432221 12245666666644 224444556677778875 4
Q ss_pred CcchHHHHhc--Cc--hHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 139 ASDCSVVDKL--GF--PRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 139 ~~~~~~l~~~--g~--v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+..|+.+.+. +. +..|+.++.+.+..-|.-++.+|-+++=+..
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~ 135 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD 135 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh
Confidence 6777877755 44 8899999999977777889999998876654
No 225
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=4.4 Score=41.18 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhh
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISS 91 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~ 91 (315)
..|-+-|++.++.++..|..+|-+|+.|. ..+...|.+.+.+.-++.+++.. .+..||.|++..|=.
T Consensus 41 ralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 41 RALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 34556677778899999999999999995 55666889999999999999887 788999999987753
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=80.85 E-value=16 Score=41.14 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=81.5
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 144 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~ 144 (315)
+++.|+..|. |+|..+|....-.|.-++- +- ...-++.+-+|.|.+.|....+-+..+|+..|+.|+...-..+..
T Consensus 618 iLshLiTfLN-DkDw~LR~aFfdsI~gvsi-~V--G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 618 ILSHLITFLN-DKDWRLRGAFFDSIVGVSI-FV--GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred hHHHHHHHhc-CccHHHHHHHHhhccceEE-EE--eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence 5677788775 5688888877777774321 00 111134567899999999999999999999999999764443333
Q ss_pred HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+. .+++.+..+|-+++.-+|..++..+..+++.-.
T Consensus 694 v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 694 VK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 33 467778888899999999999999888876554
No 227
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=80.76 E-value=17 Score=36.21 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=93.2
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSV 144 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~ 144 (315)
+..++.-..+.+...-....+..+|-.+...+.+- ..++..|.+-|...|+.+...|+.++.++..+. ...+..
T Consensus 9 ~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E 83 (462)
T KOG2199|consen 9 FEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE 83 (462)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHhhcCCCccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH
Confidence 44444443444444445667788888887665432 357888999999999999999999999998754 345567
Q ss_pred HHhcCchHHHHHhhC-CCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhh
Q 021251 145 VDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKG 205 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~-s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~ 205 (315)
+....|...|..++. +.+..|+++.-..+...+..+. .+|.+.|...|-+.++.
T Consensus 84 VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K-------~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 84 VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK-------KDPSLSLISALYKKLKE 138 (462)
T ss_pred HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc-------cCcchhHHHHHHHHHHH
Confidence 778899999999999 6889999998888877766332 45667777766666655
No 228
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.75 E-value=29 Score=37.33 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=86.9
Q ss_pred cCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 21 IGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 21 ~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
.+...++| .++.+.++-+|...+..++-+--.. -..+++..|+..--+|.+..||+.|+-||+=++-..+.
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~- 588 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE- 588 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-
Confidence 44566777 5667789999999888776431110 01246778888866788999999999999976654333
Q ss_pred HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH-H
Q 021251 100 IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL-A 177 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L-~ 177 (315)
-++..+.+|. +-++.+|--|+.+|.--|.+.. .+.. +..|-.+......-||.-|+-++.-+ +
T Consensus 589 --------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 589 --------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEA------INLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 2333445554 5679999999999988776432 2211 12222333334455777777666544 4
Q ss_pred cCCc
Q 021251 178 REKA 181 (315)
Q Consensus 178 ~~~~ 181 (315)
++++
T Consensus 654 Q~t~ 657 (929)
T KOG2062|consen 654 QQTE 657 (929)
T ss_pred hccc
Confidence 4443
No 229
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.72 E-value=10 Score=35.19 Aligned_cols=176 Identities=20% Similarity=0.257 Sum_probs=108.3
Q ss_pred HHHHHhhcC-CCChhHHHHcCChHHHH-H-------hhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCC---H
Q 021251 3 DELQEHVES-IDMANDLHSIGGLAPLL-G-------YLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANG---L 66 (315)
Q Consensus 3 e~L~dLven-iDnA~d~~~~Ggl~~Ll-~-------lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~---l 66 (315)
+||-.--|+ -|.|-.+-..-|++..+ + +|+- +...=|...+-.|-.+....|+.+..|++... +
T Consensus 67 ~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ahiplfl 146 (315)
T COG5209 67 DELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAHIPLFL 146 (315)
T ss_pred HHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecccceee
Confidence 444444444 36776665555554332 2 2221 23334444444444555568999999888753 2
Q ss_pred HHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---
Q 021251 67 EPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENASD--- 141 (315)
Q Consensus 67 ~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~--- 141 (315)
-+.+...++ .+-+.+|..+++.|++++.+...-...|+ ....+|.+.+++...+.--|.-|++.+..++.++.-.
T Consensus 147 ypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYi 226 (315)
T COG5209 147 YPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYI 226 (315)
T ss_pred HhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHH
Confidence 334444333 35568999999999999999877666665 5678999999999999999999999999888654322
Q ss_pred hHHHHhc----CchHHHHH-hhCCCChHHHHHHHHHHHHHHc
Q 021251 142 CSVVDKL----GFPRLMLH-LASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 142 ~~~l~~~----g~v~~Lv~-LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
++.+... .+...++. +...+...+..+++++-..|+.
T Consensus 227 CqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 227 CQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 2222222 22333332 3344666677777776655543
No 230
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.53 E-value=5.3 Score=31.42 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=55.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
+.-.+..|+++..-||.++...|+.+..... ....--.+++..++..|+. ++.-|--.|+-+++.|+.-++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 4556788899999999999999999998765 1111223567778888775 5788999999999999877654
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.42 E-value=6.8 Score=37.74 Aligned_cols=98 Identities=22% Similarity=0.194 Sum_probs=66.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251 28 LGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 106 (315)
Q Consensus 28 l~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 106 (315)
++-+++....|-..||.+++.+.++ |..+++ +.+.+-..+-.=.+..+--|+..|.-||-.|+.+-.+..
T Consensus 135 vkslKNlRS~VsraA~~t~~difs~ln~~i~~---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------ 205 (334)
T KOG2933|consen 135 VKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------ 205 (334)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------
Confidence 4556778889999999999999996 444444 222222222221223445789999999999998766532
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251 107 NGYAALRDALGSESVKFQRKALNLIQYLL 135 (315)
Q Consensus 107 gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll 135 (315)
.++.|+.+++...++++.+++..+.+..
T Consensus 206 -~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 206 -LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 3455777788889999999987665544
No 232
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=23 Score=37.05 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=82.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 106 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 106 (315)
+-.+|.+.++.+|...+..++-+--..- ..|++..|+..--+|.++.||+.|+-||+=+|-...
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------- 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------- 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence 3367778888899888888764422111 235677888885677889999999999997765433
Q ss_pred CcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 107 NGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 107 gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
+.+.-.+++|. +.+..+|--.+.+|.-.|.+.... . .+..|-.|......-+|+.|.-++.-+.
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-V------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-H------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 23344555554 456888888888888777543221 1 1223344445555667777776666543
No 233
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.07 E-value=9.5 Score=42.55 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=81.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhc---CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN---Np~~Q~~vle~---G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+..++.+|++++-.+|-.-..++|+++-. ++.. +...+. -.+..|..-+. |.+.-||.|++.-..+|++-+.
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~-~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEEL-EEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence 45667788889999999999999988652 2221 111111 24555555543 5678999999999999998664
Q ss_pred hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251 98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 142 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~ 142 (315)
.....+ ...+...++-|.+.+.-|+++|+.+++.++..+|...
T Consensus 392 ~p~~~~--~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~ 434 (1251)
T KOG0414|consen 392 IPLGSR--TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSS 434 (1251)
T ss_pred CCccHH--HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchh
Confidence 322222 2345566777888999999999999999999888654
No 234
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.85 E-value=12 Score=29.90 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=53.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHc-----ccCCCCHHHHHHHHHHhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSN-----FASDPDVTVRTKALGAISS 91 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~L-----L~sd~~~~vr~kAl~ALS~ 91 (315)
.+..|.+-|++.++.+.-.|..+|-.+++|. +.++..+.....+..+++. ...+.+..||.+++..+..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4556666778889999999999999999995 7888888888776666653 2234578999999887754
No 235
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.53 E-value=13 Score=30.98 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=60.2
Q ss_pred ChHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhc-CCHHHHHHcccC---
Q 021251 1 MLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEA-NGLEPLLSNFAS--- 75 (315)
Q Consensus 1 lLe~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~-G~l~~Ll~LL~s--- 75 (315)
+++||..+.-. +...+.. .+..|.+-|++.++.|+..|..+|-.++++ ++.++..+.+. ..|..+.+. ..
T Consensus 21 ~~~Eia~~t~~--s~~~~~e--i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f-~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRK--SVGSCQE--LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY-KGPPD 95 (122)
T ss_pred HHHHHHHHHHc--CHHHHHH--HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc-CCCCC
Confidence 35666666655 4455554 367788888888899999999999999886 56777776665 344444444 32
Q ss_pred -----CCCHHHHHHHHHHhhhhh
Q 021251 76 -----DPDVTVRTKALGAISSLI 93 (315)
Q Consensus 76 -----d~~~~vr~kAl~ALS~Li 93 (315)
+....||.+|--+++.|-
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHh
Confidence 124578888877777653
No 236
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.46 E-value=15 Score=39.16 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=106.2
Q ss_pred cCChHHHHHhh-cC----CCHHHHHHHHHHHHHH-hhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc
Q 021251 21 IGGLAPLLGYL-KN----SHANIRAKAGEVVTTI-VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 21 ~Ggl~~Ll~lL-~s----~~~~vR~~Aa~~Lgti-aqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR 94 (315)
+|-+.|++.-+ .+ .++.++..|--++..+ |-.+..| .+ -+|.||..+...+++.+|.+|+-+++-+.-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc----~e--hlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC----SE--HLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH----HH--HHHHHHHHHhhCCCcceeccceeeccccce
Confidence 45567777433 33 5788888888777643 3233343 23 389999999877899999999999987654
Q ss_pred CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHH
Q 021251 95 HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL 174 (315)
Q Consensus 95 ~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~ 174 (315)
- +..+++. --..|.+-|...+..+|+.+...+..|+-.+ .+.-.|-...++.+|..+|..+.+-|-..+.
T Consensus 964 c----fN~~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft 1033 (1128)
T COG5098 964 C----FNTTADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFT 1033 (1128)
T ss_pred e----hhhhhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHH
Confidence 3 3344432 2346788888899999999999998887532 2334588889999999999999999988888
Q ss_pred HHHcCCc
Q 021251 175 ELAREKA 181 (315)
Q Consensus 175 ~L~~~~~ 181 (315)
+++....
T Consensus 1034 ~~a~KdN 1040 (1128)
T COG5098 1034 QIAKKDN 1040 (1128)
T ss_pred HHHhccc
Confidence 8887765
No 237
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=79.21 E-value=17 Score=30.73 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=69.5
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHH-HHHhh
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRL-MLHLA 158 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~-Lv~LL 158 (315)
-...+-.|+-+++....+.+ .++..|..=|+ +.+++++..|+.+|..++.+.. .....+...+|+.. |+.++
T Consensus 18 dw~~ileicD~In~~~~~~k-----~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i 92 (141)
T cd03565 18 DWGLNMEICDIINETEDGPK-----DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLI 92 (141)
T ss_pred CHHHHHHHHHHHhCCCCcHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHH
Confidence 35566778888876443221 35566777676 4689999999999999997653 44567777899997 99999
Q ss_pred CC---CChHHHHHHHHHHHHHHcCC
Q 021251 159 SS---EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 159 ~s---~d~~v~e~aL~aL~~L~~~~ 180 (315)
.. .+..|+++++..+.+.+...
T Consensus 93 ~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 93 NPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHh
Confidence 74 34689999999998887654
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=78.50 E-value=13 Score=41.84 Aligned_cols=89 Identities=25% Similarity=0.235 Sum_probs=60.6
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCCHHHHHHcccCCC
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN----Np~~Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
||.|+.+...+|--..+-. .+|.++.+++.+.+.||+.|...|..+..+ +|.-...|.++ .+|.|=.++....
T Consensus 444 LeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~ 520 (1431)
T KOG1240|consen 444 LELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSS 520 (1431)
T ss_pred HHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCc
Confidence 5677888888877766666 489999999999999999999998865433 22223334455 6777777755424
Q ss_pred CHHHHHHHHHHhhhhh
Q 021251 78 DVTVRTKALGAISSLI 93 (315)
Q Consensus 78 ~~~vr~kAl~ALS~Li 93 (315)
..-||..-+..|+-|+
T Consensus 521 ~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 521 AQIVRIAYASNLAQLA 536 (1431)
T ss_pred cceehhhHHhhHHHHH
Confidence 4455655555555554
No 239
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.14 E-value=52 Score=35.29 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHh
Q 021251 36 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 115 (315)
Q Consensus 36 ~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~l 115 (315)
..|-..++..+..+-|-.+.. .+ =.|.+..|++-..+ ++..||-..+.-|.-+.-.....-+.+ -.+-...|..-
T Consensus 60 dRIl~fla~fv~sl~q~d~e~--Dl-V~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~R 134 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEE--DL-VAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIR 134 (892)
T ss_pred HHHHHHHHHHHHhhhccCchh--hH-HHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHH
Confidence 346666666666666544432 22 23567777777665 688999999888887765433322222 12333445555
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHH
Q 021251 116 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLL 174 (315)
Q Consensus 116 L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~ 174 (315)
+....+.+|..|+.+|+++=....+. +..++..+..+++. ++.+||..|+..+.
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 56677899999999999996322221 34677888888888 67889988875543
No 240
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.31 E-value=16 Score=39.15 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHH
Q 021251 32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA 111 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~ 111 (315)
...+.+||..|.-+||-++-..|.. ++..+++|..+-++-||--|..||+=.|-+.-. . -.+.+
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~------eAi~l 628 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-K------EAINL 628 (929)
T ss_pred cccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-H------HHHHH
Confidence 3468899999999999888777753 677888888778899999999999977766322 1 12334
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhh-cCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 112 LRDALGSESVKFQRKALNLIQYLLN-ENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 112 L~~lL~s~~~kl~~kA~~lLs~Ll~-~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
|-.+...+..=+|+-|+-+++-++. .++.....+ .|+.+++.+++...+
T Consensus 629 Lepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 629 LEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKH 678 (929)
T ss_pred HhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhh
Confidence 4444454556677777777766553 223222211 144455555554443
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.29 E-value=27 Score=36.18 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHH-----------HHHhcCCHHHHHHccc---CCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQ-----------LVMEANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~-----------~vle~G~l~~Ll~LL~---sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
.++.++..|.-.+|+++.. .|.. ..+....++.|...|. +..+...+..++-||+|+ +++
T Consensus 447 ~~~~l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~-- 520 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHP-- 520 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-G--
T ss_pred CChhHHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCc--
Confidence 4567888888888876542 2211 1222345666666665 345678889999999998 222
Q ss_pred HHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChHHHHHHHHHHH
Q 021251 100 IEAFRLANGYAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLL 174 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~---~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~ 174 (315)
..++.|...+... +..+|..|++++..+....+. .+.+.+..++.. .+.++|-.|+.+|.
T Consensus 521 -------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 521 -------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp -------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred -------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 3456666666665 689999999999888654332 234456666655 67889988876664
Q ss_pred H
Q 021251 175 E 175 (315)
Q Consensus 175 ~ 175 (315)
.
T Consensus 586 ~ 586 (618)
T PF01347_consen 586 R 586 (618)
T ss_dssp H
T ss_pred h
Confidence 3
No 242
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.99 E-value=39 Score=34.63 Aligned_cols=151 Identities=18% Similarity=0.137 Sum_probs=88.8
Q ss_pred hcCCHHHHHHccc---CCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhc
Q 021251 62 EANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 62 e~G~l~~Ll~LL~---sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~ 137 (315)
+.|.+..++..+. +|++..+|.-|+..|.++..+.+........ --+..+++.|- ..+..++-.+..+|..++..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 5566655554443 3567788888888888888774443222221 23444555544 45678888887777776642
Q ss_pred CC--cchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC--CcchhhhhhhhhHHHHHHHHH----HHHhhccCC
Q 021251 138 NA--SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE--KADGSAIKLAEDNEKLKQLLG----ERIKGISLM 209 (315)
Q Consensus 138 ~~--~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~--~~~~~~~c~~~~~~~L~~~L~----~~~~~i~~~ 209 (315)
-. .-...+. .+.-++..++.+.+.++|-.+..+++.|+.- .++ +..+.+... .-+-.|...
T Consensus 331 ~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~---------e~~Fte~v~k~~~~lllhl~d~ 399 (533)
T KOG2032|consen 331 ASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW---------EEFFTEQVKKRLAPLLLHLQDP 399 (533)
T ss_pred hhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc---------hhhhHHHHHhccccceeeeCCC
Confidence 11 1111121 3455778888999999999998887777533 322 222232333 223345555
Q ss_pred ChhhHHHHHHHHHHH
Q 021251 210 SPEDLGAAREERHLV 224 (315)
Q Consensus 210 ~~ed~~~~~eE~~~~ 224 (315)
++-+..+++.+..+|
T Consensus 400 ~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 400 NPYVARACRSELRTC 414 (533)
T ss_pred ChHHHHHHHHHHHhc
Confidence 677777777776666
No 243
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=74.88 E-value=1e+02 Score=33.69 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHcccCCCC----HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc----CCC----HHHHHHH
Q 021251 60 VMEANGLEPLLSNFASDPD----VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----SES----VKFQRKA 127 (315)
Q Consensus 60 vle~G~l~~Ll~LL~sd~~----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~----s~~----~kl~~kA 127 (315)
+.++||+..|+.++.+-.+ ...-...+--+...|. -+.+++.+++.|+++.|++.|. .+. ..+-.+.
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 4478999999999976322 1222233333333332 2566788889999999888774 444 6777888
Q ss_pred HHHHHHHhhcCCcch-HHH----H-------hcCchHHHHHhhCC----CChHHHHHHHHHHHHHHcCCcchh
Q 021251 128 LNLIQYLLNENASDC-SVV----D-------KLGFPRLMLHLASS----EDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 128 ~~lLs~Ll~~~~~~~-~~l----~-------~~g~v~~Lv~LL~s----~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
+.++..|+.+-.... ... . ...-+..+++.+.+ .+..+.+..++.|-.|+-++....
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 888888876432211 110 0 11235556666665 367788999999999988886544
No 244
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=74.80 E-value=42 Score=31.53 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=71.1
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH-HHHHHcCcHHHHHHhh----c--------CCCHHHHHHHHHHH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDAL----G--------SESVKFQRKALNLI 131 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGl~~L~~lL----~--------s~~~kl~~kA~~lL 131 (315)
.+|.++.+++. .++.+|.+++..+..++.+.+... ..+...|-.+++.+.+ . .+...+...|--++
T Consensus 120 iiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 58999999875 589999999999999998876654 2355656556555554 3 24467777777778
Q ss_pred HHHhhc---CCc-ch----HHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 132 QYLLNE---NAS-DC----SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 132 s~Ll~~---~~~-~~----~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
..|+.- .+. .+ ..+...|++..+....+..+..++...++.+..+++.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 777542 111 11 1222233333333322233577777777777666655
No 245
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=74.47 E-value=43 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.308 Sum_probs=47.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH-HHHHhcCCHHHHHHcc----c-------CCCCHHHHHHHHHHhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ-QLVMEANGLEPLLSNF----A-------SDPDVTVRTKALGAIS 90 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q-~~vle~G~l~~Ll~LL----~-------sd~~~~vr~kAl~ALS 90 (315)
.+|+++.++++..+.+|.+++.++..+.++.+... ..+...|..+.+-..+ . .+.+..+-..|.-|+-
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 36888899999999999999999999999877554 2245556444332222 1 1233455566666666
Q ss_pred hhhc
Q 021251 91 SLIR 94 (315)
Q Consensus 91 ~LiR 94 (315)
.+++
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 6643
No 246
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=74.23 E-value=24 Score=32.46 Aligned_cols=178 Identities=15% Similarity=0.078 Sum_probs=97.4
Q ss_pred HHHHHhhcCCCChhHH---HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcc---c
Q 021251 3 DELQEHVESIDMANDL---HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNF---A 74 (315)
Q Consensus 3 e~L~dLveniDnA~d~---~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL---~ 74 (315)
+.|..++..+.....- ... ....++..+.+=..+-+--+..++..++-+ |..-..+...+ ....+..++ .
T Consensus 42 ~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (268)
T PF08324_consen 42 ESLESLLSALKSTSAYHSDLSA-WLILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGS 119 (268)
T ss_dssp HHHHHHHCCCCCC-SS---HHH-HHHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCT
T ss_pred HHHHHHHHHhcCCCccccchhH-HHHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhcc
Confidence 4455666666544321 111 133444455443334466777777777764 44434444443 123333333 2
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc--H-HHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcch-HHHHh
Q 021251 75 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--Y-AALRDALGSE---SVKFQRKALNLIQYLLNENASDC-SVVDK 147 (315)
Q Consensus 75 sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--l-~~L~~lL~s~---~~kl~~kA~~lLs~Ll~~~~~~~-~~l~~ 147 (315)
.+.....+.-++..++|+..+... ...+..+.. + ..+..+..+. +..+|.-++.++.++.......+ ..-..
T Consensus 120 ~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~ 198 (268)
T PF08324_consen 120 SSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ 198 (268)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred CCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 235788999999999999987544 455544332 2 2222223332 68889999999888763211111 00011
Q ss_pred cCchHHHHH-hhCC-CChHHHHHHHHHHHHHHcCCcch
Q 021251 148 LGFPRLMLH-LASS-EDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 148 ~g~v~~Lv~-LL~s-~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
..++..+++ +... .|.+..-+++-||++|+...+..
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 124555666 3333 68899999999999999666433
No 247
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.53 E-value=25 Score=29.17 Aligned_cols=90 Identities=20% Similarity=0.127 Sum_probs=58.0
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSE 161 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~ 161 (315)
-.+--|+.+++++...... -...|..-|+.+++.++.|++.+|.+|+...+......... -.|+.+.+.-...
T Consensus 20 y~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPP 94 (122)
T ss_pred HHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 3444677777775443332 35678888888999999999999999998776544333322 4566666655532
Q ss_pred C--------hHHHHHHHHHHHHHHc
Q 021251 162 D--------PDVREAALRGLLELAR 178 (315)
Q Consensus 162 d--------~~v~e~aL~aL~~L~~ 178 (315)
| ..||+.|-.++..|-+
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhc
Confidence 2 3477777666655543
No 248
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=73.15 E-value=24 Score=32.89 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=60.8
Q ss_pred HHHhhcCCCChhHHHHcCChHHHH-HhhcC-----CCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCC
Q 021251 5 LQEHVESIDMANDLHSIGGLAPLL-GYLKN-----SHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 5 L~dLveniDnA~d~~~~Ggl~~Ll-~lL~s-----~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
|+-++...+...-|.+.- +|.++ ++|+. ...-+|-.+..+||.+++|. +.+-..+....++|.++++++..
T Consensus 124 LQclaShPetk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g- 201 (315)
T COG5209 124 LQCLASHPETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG- 201 (315)
T ss_pred HHHHhcCcchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh-
Confidence 344444444444455443 34333 55532 46779999999999999985 56666666779999999998874
Q ss_pred CHHHHHHHHHHhhhhhcCC
Q 021251 78 DVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~ 96 (315)
++.-+.-|++-+.-++-+.
T Consensus 202 SElSktvaifI~qkil~dD 220 (315)
T COG5209 202 SELSKTVAIFIFQKILGDD 220 (315)
T ss_pred hHHHHHHHHHHHHHHhccc
Confidence 5666777777777666543
No 249
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=31 Score=37.62 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=65.2
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251 28 LGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 106 (315)
Q Consensus 28 l~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 106 (315)
++..++++...|+.++..+|.++|-+. ..++.|.+. +..++.+...|...-+|+.|+.-|..+.++-..-.-.|...
T Consensus 853 l~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev--~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~ 930 (982)
T KOG4653|consen 853 LSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEV--LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRL 930 (982)
T ss_pred HHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHH
Confidence 334455677789999999999999654 234444443 66778887888889999999999999888754333333322
Q ss_pred ---CcHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 021251 107 ---NGYAALRDALGS-ESVKFQRKALNLIQY 133 (315)
Q Consensus 107 ---gGl~~L~~lL~s-~~~kl~~kA~~lLs~ 133 (315)
.-...+...... ++..++..|+-.+..
T Consensus 931 ~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 931 LLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 222223333332 335555555554443
No 250
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=13 Score=43.37 Aligned_cols=112 Identities=19% Similarity=0.138 Sum_probs=78.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
+..++..|.++++.+|..++.+++.++|--+ +...-.......+.-+++..|+-.|.--..|++|+-|..-.....=
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~---~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVG---SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 4455566677888899999999998888532 2233334566677777777788888889999999988643321111
Q ss_pred HHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcC
Q 021251 104 RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~ 138 (315)
....++.+|..+.+.. ++.+|+-++.+++.++...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCC
Confidence 1236788888887764 5699999999999888643
No 251
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=73.05 E-value=5.7 Score=35.40 Aligned_cols=126 Identities=12% Similarity=0.068 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHcccCCC--C---------------HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh
Q 021251 54 PRSQQLVMEANGLEPLLSNFASDP--D---------------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL 116 (315)
Q Consensus 54 p~~Q~~vle~G~l~~Ll~LL~sd~--~---------------~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL 116 (315)
..-|+.+.+.|++..++.++...- . ..+-..+...|..+||++...+..+.++-. .+...+
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~--~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLD--FLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-------H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh--HHHHHH
Confidence 356777778888888888875421 1 245567778888999999988887766432 223333
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 117 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 117 ~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
.......-.-+..++..+..+++.....+.+. .|..++.++.... -+..-+..|..|+..+...+
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~g--r~~~~L~~L~~lc~~~g~pI 175 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHG--RQPRYLDFLSSLCVCNGNPI 175 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT-----------------------------------------------
T ss_pred HHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcC--CChHHHHHHhhhcccCCcCC
Confidence 22222222456777888888877776666554 4889999998733 23345666776666554333
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.62 E-value=40 Score=33.20 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCch------------
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKP------------ 98 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~~------------ 98 (315)
...-|..|+..|-.++...++ .+.+. +.+..++.-..++ .+-.-+-.|++.+++++-....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~---~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEK---QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred cCCcHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 355788899999988875332 22221 2344444432222 3445566788988887654321
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251 99 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 173 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL 173 (315)
....|....-++-|. .=.+..+-+|.+|+..+..+-..- .++.+. ++++.++.+|.+++.-|+..|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l--~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL--PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC--CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 134555555555555 222345889999999998887542 233333 5899999999999999998888764
No 253
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.46 E-value=18 Score=40.02 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~ 114 (315)
.+.||+++.-.+|.++=-+... ....+|.|++-|.-.++..+|-+.+-|++-+|-++....+ --+|.|..
T Consensus 944 ~~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d-----~YiP~I~~ 1013 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD-----RYIPMIAA 1013 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH-----HhhHHHHH
Confidence 3578999999999888654443 2336888999888777889999999999999988754433 34688899
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhc
Q 021251 115 ALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 115 lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
.|..+++-+|+.+.-+|+.|++.
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999974
No 254
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=71.97 E-value=16 Score=35.19 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCchhH
Q 021251 38 IRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
+|-.|..++..+. .++..+..++..+ .+.-|+.++..+ -+..+|..|+.+|.+|+++..-..
T Consensus 238 iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~ 303 (329)
T PF06012_consen 238 IRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCS 303 (329)
T ss_pred HHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHH
Confidence 4444444444444 5678889999998 999999998764 457899999999999998765443
No 255
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.52 E-value=4.7 Score=39.60 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc-CCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 41 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 41 ~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~-sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
+-...||.+|--++..|+.|.+.||++.++.... +|.++-++...++|+-.|..++...|+.+-
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 3566889999999999999999999998887643 356889999999999999999988877653
No 256
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=70.58 E-value=43 Score=37.30 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch---hHHHHHH--cCc
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP---GIEAFRL--ANG 108 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~---~~~~f~~--~gG 108 (315)
=+..+|+.|+++|..++.--|+. +..+.+++||....+ ++...|.-..-|.+.++-+.-. ....+.+ -.|
T Consensus 556 Wd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 58999999999999999877753 566788999998665 5777787777777776543211 1111111 122
Q ss_pred HH-HHHHh----hcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 109 YA-ALRDA----LGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 109 l~-~L~~l----L~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+. .+..+ +... ...++.-.+..+..+..+.......+.-.++-.-+...+..++ .+|+.+..++..+++...
T Consensus 631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~ 708 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYV 708 (1133)
T ss_pred hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHH
Confidence 21 11111 1111 1344455555565555444333333333445555555554445 788888888888876543
No 257
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=70.28 E-value=27 Score=36.61 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=58.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhh
Q 021251 111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAE 190 (315)
Q Consensus 111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~ 190 (315)
.|-..|++.-.-+...++.++..+...+-.. .+.+ -.|..|-.+|.+.....|-.|+++|.+|+...|+.+..|
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc--- 341 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEENVGS--QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC--- 341 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhccCH--HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec---
Confidence 3444455555777778888887777654111 1111 245567777888999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHh
Q 021251 191 DNEKLKQLLGERIK 204 (315)
Q Consensus 191 ~~~~L~~~L~~~~~ 204 (315)
..++..++...-+
T Consensus 342 -N~evEsLIsd~Nr 354 (898)
T COG5240 342 -NKEVESLISDENR 354 (898)
T ss_pred -ChhHHHHhhcccc
Confidence 4454455444333
No 258
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=70.25 E-value=81 Score=33.59 Aligned_cols=135 Identities=11% Similarity=0.010 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR 113 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~ 113 (315)
.+.+-|..=-.-+.... +..-+.++..-.++.|+..+.-+..-......++.+.-....-+ ++.+-++.|+
T Consensus 266 ks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p~l~ 336 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE------YQVRIIPVLL 336 (690)
T ss_pred CcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc------cccchhhhHH
Confidence 34444444333333322 23335566666777777766544312222333444443332211 3456789999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.++.+.|..+|.. +|.++-..-+.......+.-+.+++..-+...+..+||+++..+..|+..-
T Consensus 337 kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 337 KLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred HHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence 9999999888875 445554433344455666789999999999999999999999988887544
No 259
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=69.96 E-value=33 Score=36.75 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=97.4
Q ss_pred cCCCChhHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCC--HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHH
Q 021251 10 ESIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNN--PRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 86 (315)
Q Consensus 10 eniDnA~d~~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNN--p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl 86 (315)
++.++-..|.+.||+..+..++++ .+.+++..+..++++++--- -..+..+.... ...+-.++....+.+.--.|.
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~ersY~~~ 579 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSIERSYNAA 579 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchhhHHHHHH
Confidence 445788899999999999999986 78889999999999887532 11222111111 012222333333334555566
Q ss_pred HHhhhhhcCCch-----------------------hHHHHHHcCcHHH-HHHhhc-CCCHHHHHHHHHHHHHHhhcCCcc
Q 021251 87 GAISSLIRHNKP-----------------------GIEAFRLANGYAA-LRDALG-SESVKFQRKALNLIQYLLNENASD 141 (315)
Q Consensus 87 ~ALS~LiR~~~~-----------------------~~~~f~~~gGl~~-L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~ 141 (315)
..|+.++-+.+. ....+.-..-+.. +.+++. +.....+..|+|.+..+++.+++.
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~ 659 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEY 659 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhh
Confidence 666655544221 0001111111222 444444 355788889999999999998888
Q ss_pred hHHHHhcCchHHHHHhhCCC-ChHHHHHHHHH
Q 021251 142 CSVVDKLGFPRLMLHLASSE-DPDVREAALRG 172 (315)
Q Consensus 142 ~~~l~~~g~v~~Lv~LL~s~-d~~v~e~aL~a 172 (315)
.+.+.+.|++..+..+-... ..++++.+...
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 660 CKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred hhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 88888888888777654442 33344444433
No 260
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=69.67 E-value=36 Score=29.90 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
++-+.++..+++..++..|+.++..++..+=.+ =.-.++.++.|..+++..++..|...+..+....+..+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 345677778899999999999999888643111 11367899999999999999999999999988887555
No 261
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.61 E-value=31 Score=32.25 Aligned_cols=68 Identities=29% Similarity=0.356 Sum_probs=44.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChHHHHHHHHHHHHHHcCCc
Q 021251 111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.|-..|.+++..+|.||..+|+.++..-+.+. ....-|..|+..+.+ +|......++.++..|++...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~ 72 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN 72 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC
Confidence 35567889999999999999999997655321 111224444444433 566666666778877775543
No 262
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.02 E-value=43 Score=32.39 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=74.2
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
+...+..|++ .+=..++.++..|.+|.+=|+......+. --+-.+++-++.....+-+-||..++.+.+........
T Consensus 90 l~~~l~~L~s-~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSS-DDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhch-HHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4445556565 36678889999999998877654433322 34555666777778899999999999998753332222
Q ss_pred HhcCchHHHHH-hhCC---CChHHHHHHHHHHHHHHcCCcch
Q 021251 146 DKLGFPRLMLH-LASS---EDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 146 ~~~g~v~~Lv~-LL~s---~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
.+..++. |+.. ++.-++|.|..+|..++.+-...
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~ 204 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ 204 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence 2333333 3333 45669999999999999887543
No 263
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=68.91 E-value=14 Score=39.38 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~ 114 (315)
.+.-|-.|..++|.+++..|.---.|++...+..|+++|..|.+..+...|+.+|.-|+=+-+.....++. .-+.+..+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~-~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP-DLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH-HHHHHHHH
Confidence 56789999999999999998888889999999999999999999999999999999998877655444432 34445555
Q ss_pred hh
Q 021251 115 AL 116 (315)
Q Consensus 115 lL 116 (315)
++
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 54
No 264
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=68.40 E-value=65 Score=32.03 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCC--hhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251 3 DELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80 (315)
Q Consensus 3 e~L~dLveniDn--A~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~ 80 (315)
+.|.-++++.+. |..+....-+.-|+.+++|+++.=|.....++-.+-...+..+..+.+ .....|++.+.......
T Consensus 112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccccc
Confidence 445666666543 556666667788999999999999999999998887766655444332 23344444444333333
Q ss_pred HHHHHHHHhhhhhcCCc
Q 021251 81 VRTKALGAISSLIRHNK 97 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~ 97 (315)
-....+.-++++++|+.
T Consensus 191 gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 191 GIAELLEILGSIINGFA 207 (409)
T ss_dssp THHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHhccC
Confidence 34455555666666543
No 265
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.23 E-value=36 Score=35.05 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=76.2
Q ss_pred HHHhhcC----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHhcCCHHHHHHcccC---CCCHHHHHHHHHHhhhhhcC
Q 021251 27 LLGYLKN----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLLSNFAS---DPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 27 Ll~lL~s----~~~~vR~~Aa~~Lgtiaq----NNp~~Q~~vle~G~l~~Ll~LL~s---d~~~~vr~kAl~ALS~LiR~ 95 (315)
+..++++ .+..++..|.-.+|+++. +.+.+... +....++.|...|.. ..+...+.-++-||+|+ +
T Consensus 398 l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g 474 (574)
T smart00638 398 LFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--G 474 (574)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--C
Confidence 3445554 356688888888876653 33332211 222356666665543 34556678889999997 3
Q ss_pred CchhHHHHHHcCcHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChHHHHHHH
Q 021251 96 NKPGIEAFRLANGYAALRDALG---SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAAL 170 (315)
Q Consensus 96 ~~~~~~~f~~~gGl~~L~~lL~---s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~v~e~aL 170 (315)
++... ..+...+. ..+..+|.-|+++|..+....+. .+-+.+..++.. .+.++|-.|+
T Consensus 475 ~~~~i---------~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~ 537 (574)
T smart00638 475 HPSSI---------KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAV 537 (574)
T ss_pred ChhHH---------HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHHH
Confidence 33332 33333333 23588999999999988754443 233445566655 6788888877
Q ss_pred HHHH
Q 021251 171 RGLL 174 (315)
Q Consensus 171 ~aL~ 174 (315)
.+|.
T Consensus 538 ~~lm 541 (574)
T smart00638 538 LVLM 541 (574)
T ss_pred HHHH
Confidence 6553
No 266
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.08 E-value=5 Score=39.44 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=53.4
Q ss_pred HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 021251 85 ALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKL 148 (315)
Q Consensus 85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL--~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~ 148 (315)
.+.-|+++|-.++.+++.+.+.||++.++.-. ...++=+++.+..++..|++++.++++.+.++
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 45578899999999999999999999877653 34569999999999999999888887776655
No 267
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=66.80 E-value=12 Score=39.44 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=76.6
Q ss_pred HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 19 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 19 ~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
..-+.+|.|+++..+.+..||..=..=+-..+.. ....+++.-++|.+..-+. |++..+|...+-++.+|+--=..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~-DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFL-DTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcc-cCCHHHHHHHHHHHHHHHhhhch
Confidence 3444566666666666666666666666555543 3344556666666666654 35666666666666555432111
Q ss_pred h------HHHHHH-----cCc-------------------------HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 021251 99 G------IEAFRL-----ANG-------------------------YAALRDALGSESVKFQRKALNLIQYLLNENASDC 142 (315)
Q Consensus 99 ~------~~~f~~-----~gG-------------------------l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~ 142 (315)
. .+.|.. +|| .....+.+.++-..-|..+.+.+.......+
T Consensus 403 ~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~--- 479 (690)
T KOG1243|consen 403 RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD--- 479 (690)
T ss_pred hhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc---
Confidence 0 111111 111 1223334444445555555554444332211
Q ss_pred HHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 143 SVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 143 ~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
..-+...+++.++.+.-.++..+|..|..++...
T Consensus 480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 1122335667777777777777777777665444
No 268
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.54 E-value=62 Score=34.53 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=79.1
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
++-|.+++..++-+-++.+. +|+|+..|.+. .+.....-++=.+++.-+ |. -...-.++.|..++.......+
T Consensus 294 lk~Ls~~ip~fp~rv~~~ki--LP~L~~el~n~--~~vp~~LP~v~~i~~~~s--~~-~~~~~~~p~l~pi~~~~~~~~~ 366 (700)
T KOG2137|consen 294 LKGLSKLIPTFPARVLFQKI--LPTLVAELVNT--KMVPIVLPLVLLIAEGLS--QN-EFGPKMLPALKPIYSASDPKQA 366 (700)
T ss_pred HHHHHHhhccCCHHHHHHhh--hhHHHHHhccc--cccccccchhhhhhhccc--hh-hhhhhhhHHHHHHhccCCcccc
Confidence 45566777777777777774 77777666432 111111111222222211 11 1122244555555442222333
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh-hCC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL-ASS 160 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~L-L~s 160 (315)
...-+--..+|.+.-+ ..+++...+++|.+.+.+.+..+|.+++..+..++..- + -.+++.-+++.+..+ +++
T Consensus 367 ~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i--D-~~~vk~~ilP~l~~l~~~t 440 (700)
T KOG2137|consen 367 LLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESI--D-VPFVKQAILPRLKNLAFKT 440 (700)
T ss_pred hhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc--c-HHHHHHHHHHHhhcchhcc
Confidence 3333333333433222 13344566777777777777777777777666665421 1 233444455555443 223
Q ss_pred CChHHHHHHHHHHHHHH
Q 021251 161 EDPDVREAALRGLLELA 177 (315)
Q Consensus 161 ~d~~v~e~aL~aL~~L~ 177 (315)
.+..++-.+|-++..++
T Consensus 441 t~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 441 TNLYVKVNVLPCLAGLI 457 (700)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 45555555555555554
No 269
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.31 E-value=31 Score=36.23 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=71.3
Q ss_pred ChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 23 GLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 23 gl~~Ll~l-L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
.+..++.+ ....+.+||..|.-+||-+|=.. .+.+...+++|..+-+..||.-...||+-.|.+.-..
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-- 620 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-- 620 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--
Confidence 33444444 34578999999999999777543 3457777888877778899999999998777664321
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
-.+.+|-.++.....=+|+-|+-+++.++.
T Consensus 621 -----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 621 -----VATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 235567777777888899999988887764
No 270
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=55 Score=37.89 Aligned_cols=131 Identities=23% Similarity=0.241 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhh-hhcCCchhHHHHHHcCcHHHHHHh
Q 021251 38 IRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS-LIRHNKPGIEAFRLANGYAALRDA 115 (315)
Q Consensus 38 vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~-LiR~~~~~~~~f~~~gGl~~L~~l 115 (315)
=|.-||.=+|+++.+- .+.+.++ ...+|+|.+. +-|++..|+ .|+.-|.+ |+.+.+...+.+.. .-+.-|+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l--~kLIPrLyRY-~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~ 1047 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYL--KKLIPRLYRY-QYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLN-EILDELLVN 1047 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHH--HHhhHHHhhh-ccCCcHHHH-HHHHHHHHHhccChHHHHHHHHH-HHHHHHHHh
Confidence 4566777888887753 2222221 1368888888 677887775 56666665 55555555555543 455556666
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CC--hHHHHHH---HHHHHHH
Q 021251 116 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-ED--PDVREAA---LRGLLEL 176 (315)
Q Consensus 116 L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d--~~v~e~a---L~aL~~L 176 (315)
|.+.-=++|..+|.+|.+|+++.+.+ .+.+ .+.+....+++. +| ..+|+.+ +++|..+
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~--~~~e-~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFD--QVKE-KLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777899999999999999875543 2222 233444555565 33 3466544 5555554
No 271
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.31 E-value=2.2e+02 Score=30.94 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=73.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc----CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~----G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
-+..+.++|+++-+.||..|..=+..+..- . ..++=. ..+.+++.-+..|+..+||...+-.|--|.-+ +.
T Consensus 221 Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f-We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~ 295 (1005)
T KOG1949|consen 221 QFEELYSLLEDPYPMVRSTAILGVCKITSK---F-WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PL 295 (1005)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H-HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-cc
Confidence 466777899999999999998877766642 1 111111 23444455556677788988877777666543 44
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 021251 99 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 135 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll 135 (315)
....| .-|++.+-..|+.+..++|..+..+|..|-
T Consensus 296 sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 296 SHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred chhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33333 257888888999999999999988887764
No 272
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=63.89 E-value=29 Score=35.44 Aligned_cols=114 Identities=14% Similarity=0.095 Sum_probs=76.1
Q ss_pred hHHHHHhhcCC--CHHHHHHHHHHH---HHHhhCCHHHHHHHHhcCCHHHHHHccc-------CCCCHHHHHHHHHHhhh
Q 021251 24 LAPLLGYLKNS--HANIRAKAGEVV---TTIVQNNPRSQQLVMEANGLEPLLSNFA-------SDPDVTVRTKALGAISS 91 (315)
Q Consensus 24 l~~Ll~lL~s~--~~~vR~~Aa~~L---gtiaqNNp~~Q~~vle~G~l~~Ll~LL~-------sd~~~~vr~kAl~ALS~ 91 (315)
+..+...|.++ +..+|..+..-+ .....+-+..+-..+....+..+|.++. ...+...|..|--+|+.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 44445566666 778999988888 6666654443333343334444444442 12477999999999999
Q ss_pred hhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 021251 92 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 139 (315)
Q Consensus 92 LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~ 139 (315)
|++..+.... -+.+-+..|.+.|..++..++...-.+|+.++....
T Consensus 401 L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 401 LAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 9999876431 123455667777777888999998889988886543
No 273
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=63.24 E-value=64 Score=34.95 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR 113 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~ 113 (315)
-...||.+|+..+..++.-.- .+. ...-.++.++.+... ++--+|...+++|..++- ..-+.|....-++++.
T Consensus 530 ~v~~Ir~~aa~~l~~l~~~~G-~~w--~~~~~i~k~L~~~~q-~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~ 602 (759)
T KOG0211|consen 530 HVYSIREAAARNLPALVETFG-SEW--ARLEEIPKLLAMDLQ-DNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFL 602 (759)
T ss_pred hHHHHHHHHHHHhHHHHHHhC-cch--hHHHhhHHHHHHhcC-cccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHH
Confidence 345788888887776665322 111 122357788888554 356788888888886652 1223444556788899
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
++.....+.+|.+++-.+..+... ......+.-+.+.+..+...++.+++-.|.-++..+.
T Consensus 603 ~l~~D~vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 603 DLVKDPVANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HhccCCchhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 988889999999999999888753 1123334344555566666677777766665555443
No 274
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=63.11 E-value=22 Score=33.20 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=56.4
Q ss_pred hHHHHHhhcCCCChhHHHHcCChH-------HHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHH-HHHHHhcCCHHHHHHc
Q 021251 2 LDELQEHVESIDMANDLHSIGGLA-------PLLGYLK-NSHANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEPLLSN 72 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~-------~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~-Q~~vle~G~l~~Ll~L 72 (315)
||.|..|+=.-.|-.-|..-+-|. .|.++|. .++...|+.|.-+|.++++..... +....+.+.+..||..
T Consensus 145 LEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~F 224 (257)
T PF12031_consen 145 LEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAF 224 (257)
T ss_pred HHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHH
Confidence 677777777777777666666554 4456664 478999999999999999976554 4555677999999999
Q ss_pred ccCC
Q 021251 73 FASD 76 (315)
Q Consensus 73 L~sd 76 (315)
+...
T Consensus 225 iE~a 228 (257)
T PF12031_consen 225 IEDA 228 (257)
T ss_pred HHHH
Confidence 8753
No 275
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=62.52 E-value=66 Score=34.81 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
.++..++++.--+|.+||..|+++.- ...+..+-..+.....+++.+ .+-.|+..|+-|+.++++|..
T Consensus 464 hv~P~f~s~ygfL~Srace~is~~ee---Dfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q 531 (970)
T COG5656 464 HVIPAFRSNYGFLKSRACEFISTIEE---DFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQ 531 (970)
T ss_pred HhhHhhcCcccchHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchh
Confidence 33444566677799999999999943 344445555566777777776 578999999999999999873
No 276
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.10 E-value=56 Score=26.06 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhh-hhcCCchhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 021251 80 TVRTKALGAISS-LIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 157 (315)
Q Consensus 80 ~vr~kAl~ALS~-LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~L 157 (315)
++|+.|+--|-+ +.++--. ...+. ...-+..|++....++.-.+.+++.++..|+. .+.....+.+.|.++-|.++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~-~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLIS-EEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhcccc-HHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHH
Confidence 466777665544 3332222 22333 33445566777777887799999999999886 57778899999999887766
Q ss_pred hCCCChHHHHHHHHHH
Q 021251 158 ASSEDPDVREAALRGL 173 (315)
Q Consensus 158 L~s~d~~v~e~aL~aL 173 (315)
=..-+...+...-..+
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6555666655544333
No 277
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.10 E-value=71 Score=34.57 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=58.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251 109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 187 (315)
Q Consensus 109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c 187 (315)
++.+-.+|.++..-+..+|+.++..|-...+. .+.- .+..|--++.++..-+|-+|.++|..++...|+.+.+|
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 34555666778899999999999888754322 2221 66777778889999999999999999999999999888
No 278
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.04 E-value=1.5e+02 Score=28.40 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=95.3
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHH
Q 021251 43 GEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVK 122 (315)
Q Consensus 43 a~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~k 122 (315)
..+.....|.|.. .....-...+..++..+.++ ...+..+... .+.+++.. +..|.+.|.+....
T Consensus 7 ~~~W~~~~~~n~~-~~~~~~~~~L~~~l~~ls~~--~~~~~~g~~l-----------~~~iL~~~-~k~lyr~L~~~~~~ 71 (330)
T PF11707_consen 7 LQIWSYAAQVNNH-SLLSLVSSVLALLLKKLSSD--LSFQSYGLEL-----------IRSILQNH-LKLLYRSLSSSKPS 71 (330)
T ss_pred HHHHHHhcCCCCh-hhHHHHHHHHHHHHHHhccc--hhHHHHHHHH-----------HHHHHHHH-HHHHHHHhCcCcHH
Confidence 3444555653322 22222234566677776653 2333333322 23334333 88899999999999
Q ss_pred HHHHHHHHHHHHhh-cCCc-chHHHHhcCc-hHHHHHhhCCC-----C--------hHHHHHHHHHHHHHHcCCcchhhh
Q 021251 123 FQRKALNLIQYLLN-ENAS-DCSVVDKLGF-PRLMLHLASSE-----D--------PDVREAALRGLLELAREKADGSAI 186 (315)
Q Consensus 123 l~~kA~~lLs~Ll~-~~~~-~~~~l~~~g~-v~~Lv~LL~s~-----d--------~~v~e~aL~aL~~L~~~~~~~~~~ 186 (315)
+..-++.++..++. .+.. .++.+...++ .+.+..++... + .++|...++.+..+....+....
T Consensus 72 ~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~- 150 (330)
T PF11707_consen 72 LTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELK- 150 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHH-
Confidence 99999999999997 4433 3455556666 35566666431 1 28999999999999888866552
Q ss_pred hhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 021251 187 KLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV 224 (315)
Q Consensus 187 c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~ 224 (315)
......+..+..-++.+. .|+.+.+..-++.+
T Consensus 151 ---~~lL~~~~~~~~l~k~l~---~D~~~~v~~iL~~l 182 (330)
T PF11707_consen 151 ---RDLLSQKKLMSALFKGLR---KDPPETVILILETL 182 (330)
T ss_pred ---HHHHHcCchHHHHHhccc---CCCHHHHHHHHHHH
Confidence 223333444555555544 45656666666555
No 279
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.67 E-value=46 Score=35.12 Aligned_cols=124 Identities=12% Similarity=0.126 Sum_probs=77.7
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhh
Q 021251 106 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSA 185 (315)
Q Consensus 106 ~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~ 185 (315)
.+-+..+++.+.++...+..-+|..+..++.++. ..-...++|..+..+++.-+.+++..++.++.+|-.+......
T Consensus 323 ~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~---~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k 399 (704)
T KOG2153|consen 323 QKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDN---GGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDEDQTKK 399 (704)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCC---ccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhhccch
Confidence 3567778888888888888999999999997644 2233445777888888888888998888888888544431110
Q ss_pred hh-----------hhhhHHHHHHHHHHHHhhcc-----CCChhhHHHHHHHHHHHHHHHHHHh
Q 021251 186 IK-----------LAEDNEKLKQLLGERIKGIS-----LMSPEDLGAAREERHLVDSLWNACY 232 (315)
Q Consensus 186 ~c-----------~~~~~~~L~~~L~~~~~~i~-----~~~~ed~~~~~eE~~~~~~L~~~~f 232 (315)
.- .++-...|-...+++.+... ..++|+.+..+++...|-+++++.|
T Consensus 400 ~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVF 462 (704)
T KOG2153|consen 400 DKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEESAEEKMKKQSEILKIVF 462 (704)
T ss_pred hhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHH
Confidence 00 01111222222233322211 1145666667777888888887666
No 280
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=59.74 E-value=67 Score=31.38 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=56.7
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 25 APLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 25 ~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
..++.=|. +....+|..++--|++-++ +|.++.+|..+|....+++.+...++..+-.-++.||-.+..........+
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 34444344 3456788888888888887 688999999999999999999554444222222223333333223333333
Q ss_pred HHcCcHHHHHHhhc
Q 021251 104 RLANGYAALRDALG 117 (315)
Q Consensus 104 ~~~gGl~~L~~lL~ 117 (315)
...+...++..++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45555666677766
No 281
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=59.69 E-value=1.4e+02 Score=27.18 Aligned_cols=97 Identities=19% Similarity=0.082 Sum_probs=58.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHc---------ccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN---------FASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~L---------L~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
+.+.++...+.-+...+..+-..++..- +.+..++.. ...+...........++..+|+..+..
T Consensus 46 L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~- 118 (234)
T PF12530_consen 46 LVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH- 118 (234)
T ss_pred HHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-
Confidence 3344556666667777777766655432 344444444 111222344444456677777766551
Q ss_pred HHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhc
Q 021251 101 EAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL-~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
-..-+..|..+| ++.+...+.-++.+|+.|+..
T Consensus 119 ----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 119 ----GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred ----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 122356677778 788899999999999999954
No 282
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.59 E-value=64 Score=28.72 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=55.2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 107 NGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 107 gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
.-++++.+.|...+.-.+--|...+..|+..... +.+.- -.+|..+-.-|.+.|.++...+|.+|..|+..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~--~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGG--EKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 5678888888888888888888888888876222 22221 1456666677888999999999999999987775
No 283
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.26 E-value=64 Score=32.94 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 54 PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 54 p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
..+.+++.+.+.++.|+.+|..+.+..++..|...|+.++|-.
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456667788999999999987778889999999988887754
No 284
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=57.62 E-value=35 Score=34.77 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=49.4
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc----hHHHHhcCchHHHHHhhCC-CChHHHH
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD----CSVVDKLGFPRLMLHLASS-EDPDVRE 167 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~----~~~l~~~g~v~~Lv~LL~s-~d~~v~e 167 (315)
++.++.....|+++=+.+.++++| +.-+....+.. .+.+.+.++|+.|+.+|.. .+.+++.
T Consensus 16 ik~~~~~v~~llkHI~~~~ImDlL--------------LklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~ 81 (475)
T PF04499_consen 16 IKSQPNFVDNLLKHIDTPAIMDLL--------------LKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQS 81 (475)
T ss_pred HHhCccHHHHHHHhcCCcHHHHHH--------------HHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHH
Confidence 555566666777666666666643 11122222222 3456678999999999985 5677899
Q ss_pred HHHHHHHHHHcCCc
Q 021251 168 AALRGLLELAREKA 181 (315)
Q Consensus 168 ~aL~aL~~L~~~~~ 181 (315)
.|..+|..|++-+.
T Consensus 82 naa~~L~aII~is~ 95 (475)
T PF04499_consen 82 NAADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988888876554
No 285
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.53 E-value=1.3e+02 Score=32.21 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=77.2
Q ss_pred hHHHHHhhcCCCChhHHHHcC----ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccC
Q 021251 2 LDELQEHVESIDMANDLHSIG----GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFAS 75 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~G----gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~s 75 (315)
||.|.-++.+.-....|++.- -+..++..++ ..+..+..++.+|.|+..| |..++.|... -.+..+++. .+
T Consensus 565 lDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~~~~~~~-~s 641 (745)
T KOG0301|consen 565 LDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESILDPVIEA-SS 641 (745)
T ss_pred HHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhhhhhhh-hc
Confidence 455555565555555555421 1223333333 4577888999999999987 8888877766 222333333 22
Q ss_pred CCCHHHHHHHHHHhhhhhcCCchhH-HHHHHcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 021251 76 DPDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLG 149 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGl~~L~~lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g 149 (315)
..+..++. |++.++-++.... +.-.+.+|.+++..++.. ++....-|.+.+|..|+..++...++. +.-
T Consensus 642 ~~~knl~i----a~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A-~~~ 716 (745)
T KOG0301|consen 642 LSNKNLQI----ALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLA-KNR 716 (745)
T ss_pred ccchhHHH----HHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHH-Hhc
Confidence 22223322 2222222211111 111125777777777654 344466677888888887544333333 322
Q ss_pred chHHHHHhhC
Q 021251 150 FPRLMLHLAS 159 (315)
Q Consensus 150 ~v~~Lv~LL~ 159 (315)
-|..+++-++
T Consensus 717 ~v~sia~~~~ 726 (745)
T KOG0301|consen 717 SVDSIAKKLK 726 (745)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 286
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.49 E-value=22 Score=40.46 Aligned_cols=148 Identities=20% Similarity=0.172 Sum_probs=89.4
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
.|.+|.|..-|.+++..+|..|..++|-+.+.. .+|-. -.+ ..+...+.-+ .|.++.||.+++-.++.+.-+++..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~-~~~l~-~~~~~~~~~fl~r~-~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK-DSQLS-ETYDDLWSAFLGRF-NDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-hhhhc-ccchHHHHHHHHHh-ccCChhhhhhHHHHhHHHHhcCchh
Confidence 456777778888999999999999999999863 33322 112 2344444443 3578899999999999877666654
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
.... +-...+.. .+.|.+++.+..-++..... ....-.++.. ++..+.+.++.....||..|++.|.++-++
T Consensus 335 ~~~~---~~~~~l~~--~~~D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 335 AKAS---TILLALRE--RDLDEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhHH---HHHHHHHh--hcCChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3322 11222222 23344444433222111110 0111122222 555666667778899999999999988774
No 287
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=57.30 E-value=1.7e+02 Score=31.87 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=90.5
Q ss_pred cCChHHHHHhhc-C-------CCHHHHHHHHHHHHHHhh----CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHH
Q 021251 21 IGGLAPLLGYLK-N-------SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA 88 (315)
Q Consensus 21 ~Ggl~~Ll~lL~-s-------~~~~vR~~Aa~~Lgtiaq----NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~A 88 (315)
.|.++.++..|. + .++.-.+-|...++++.. +.| -..++++=+++.++--+++ ..--++..|.+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp--~an~me~fiv~hv~P~f~s-~ygfL~Srace~ 483 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP--AANVMEYFIVNHVIPAFRS-NYGFLKSRACEF 483 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch--HHHHHHHHHHHHhhHhhcC-cccchHHHHHHH
Confidence 455566667772 2 123333445556655543 333 2456666666777766665 456788899999
Q ss_pred hhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhCCCChHHH
Q 021251 89 ISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVR 166 (315)
Q Consensus 89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~s~d~~v~ 166 (315)
||-+--..+. ..+....+.....+|++++-.++..|+-++..+..++ .....+... +.++.|+.|-+.-+.++.
T Consensus 484 is~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~L 559 (970)
T COG5656 484 ISTIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPL 559 (970)
T ss_pred HHHHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHH
Confidence 9988444332 2233456778888999999999999999999999765 333344333 555666666666666655
Q ss_pred HHHHHH
Q 021251 167 EAALRG 172 (315)
Q Consensus 167 e~aL~a 172 (315)
-.++..
T Consensus 560 S~vMe~ 565 (970)
T COG5656 560 SMVMES 565 (970)
T ss_pred HHHHHH
Confidence 544433
No 288
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.68 E-value=29 Score=35.37 Aligned_cols=68 Identities=26% Similarity=0.226 Sum_probs=54.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCCC--ChHHHHHHHHHHHH
Q 021251 108 GYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLE 175 (315)
Q Consensus 108 Gl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s~--d~~v~e~aL~aL~~ 175 (315)
.+..|.+-+++..++++..|+.+|..++.+.. .....+.+.+|+..+|.+.+.. +..||+++|.+|-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 45567777888888999999999998887543 3445778889999999999874 78899999988854
No 289
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=56.64 E-value=39 Score=37.50 Aligned_cols=108 Identities=11% Similarity=0.150 Sum_probs=77.6
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 144 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~ 144 (315)
.+..+++-+..+....++..|..-+-+...+++.. ..| ..|+.+|..+..+.-..++.++|..|..+...+|-. .
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~-~~f--e~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~--~ 651 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA-SKF--EVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRL--F 651 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchh-hcc--hhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchh--h
Confidence 45555666665555567777777776666666543 233 245888888888899999999999999988755432 2
Q ss_pred HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
-++..++..|+.++...+..++|+|+..|-.+.
T Consensus 652 ~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345578888999999989999999987665543
No 290
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=56.17 E-value=71 Score=34.06 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhc
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~ 137 (315)
....|..++.-||.++|..++..-.+.+..-+.-|+.+|+.+ +.-+-.-|+.+|..|+=.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999888888889999999998764 577778888888877743
No 291
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=55.85 E-value=84 Score=30.68 Aligned_cols=93 Identities=23% Similarity=0.208 Sum_probs=65.9
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSV 144 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~ 144 (315)
+..++.=+.++.+..+|..++-.|+.-|.+ +.-...|..+|...-+...+.. .+..+-.-+..++.+++..+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 445555556556778999999999998875 4556788889999999999854 33335555666666777665555556
Q ss_pred HHhcCchHHHHHhhC
Q 021251 145 VDKLGFPRLMLHLAS 159 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~ 159 (315)
+.+.+..+-++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 666666766677777
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.62 E-value=1.1e+02 Score=33.86 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=55.7
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYLK----NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL~----s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
|+-|-+++|-+ --|+..| ...++-++. -.+.-+--.+.+.|+.++.+|. +...|++.||+.+|+.+-.-+.
T Consensus 333 l~~lgey~e~l---pv~~~~g-~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vpr~s~ 407 (1516)
T KOG1832|consen 333 LEILGEYVEVL---PVLHEKG-VDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVPRVSE 407 (1516)
T ss_pred HHHHHhHHHHH---HHHHHhC-chhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCCCchh
Confidence 45566666655 4456655 555554442 2456677788889988888764 5688999999999998854322
Q ss_pred CHHHHHHHHHHhhhh
Q 021251 78 DVTVRTKALGAISSL 92 (315)
Q Consensus 78 ~~~vr~kAl~ALS~L 92 (315)
.-.=....+|.||++
T Consensus 408 ~~~g~s~cly~~~~~ 422 (1516)
T KOG1832|consen 408 TFYGLSSCLYTIGSL 422 (1516)
T ss_pred hhhhHHHHHHHHhhh
Confidence 122234567777764
No 293
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=54.10 E-value=1.7e+02 Score=27.23 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=53.7
Q ss_pred HhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcC
Q 021251 61 MEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 61 le~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~--~kl~~kA~~lLs~Ll~~~ 138 (315)
-+..++++++++++.+.+ .+- .-++-.+...-+..-.-+-.|-+..|.+++.+++ .=+|..|+.++..++..+
T Consensus 70 re~~A~~~li~l~~~~~~-~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDD-FLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hhhhhHHHHHHHHcCCcc-hHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 355689999999976533 110 1111111111111111123456777777777764 678889999999999999
Q ss_pred CcchHHHHhcCchHHHHHh
Q 021251 139 ASDCSVVDKLGFPRLMLHL 157 (315)
Q Consensus 139 ~~~~~~l~~~g~v~~Lv~L 157 (315)
+..|+.+++ +++.++..
T Consensus 145 ~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 145 PISREEVIQ--YFRELLNY 161 (249)
T ss_pred CCCHHHHHH--HHHHHHHH
Confidence 988887774 34444443
No 294
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=53.07 E-value=88 Score=29.69 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=68.0
Q ss_pred HHcCChHHHH---HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhc
Q 021251 19 HSIGGLAPLL---GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIR 94 (315)
Q Consensus 19 ~~~Ggl~~Ll---~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR 94 (315)
.++||=..+. .-|..+.+-+|..++.|+|.+-. | -+++.|.+.|... ..+-||..|+.||+.+..
T Consensus 181 Rn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 181 RNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred hccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 3455544444 44445677799999999987643 2 2467777766533 467899999999999864
Q ss_pred CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 021251 95 HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 95 ~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~ 138 (315)
. ..+.+|.+.+..++.-++.-+..+|..+-..+
T Consensus 250 e-----------~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 250 E-----------DCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred H-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 2 24567888888888888888888887665443
No 295
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=52.55 E-value=66 Score=30.97 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHhhhh--hcCCchhHHHHHHcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhhcCCcchHHHH------hcCchH
Q 021251 86 LGAISSL--IRHNKPGIEAFRLAN--GYAALRDALGSES---VKFQRKALNLIQYLLNENASDCSVVD------KLGFPR 152 (315)
Q Consensus 86 l~ALS~L--iR~~~~~~~~f~~~g--Gl~~L~~lL~s~~---~kl~~kA~~lLs~Ll~~~~~~~~~l~------~~g~v~ 152 (315)
+.||+++ +.........|+..+ -+.-|+++++.++ ..+|.-|+.+|..|+.......+++. ..|++.
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~ 319 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILP 319 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHH
Confidence 4566666 333344556676666 7888999998753 89999999999999986544444333 335555
Q ss_pred HHHH
Q 021251 153 LMLH 156 (315)
Q Consensus 153 ~Lv~ 156 (315)
.++.
T Consensus 320 ~llR 323 (329)
T PF06012_consen 320 QLLR 323 (329)
T ss_pred HHHH
Confidence 5543
No 296
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=52.54 E-value=2.3e+02 Score=27.58 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=106.2
Q ss_pred ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh----CCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHH
Q 021251 14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ----NNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGA 88 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq----NNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~A 88 (315)
-+..|++.|.+..+|..|..-+=+=|..++.+..++-. .--..++++... ..+..|+.- ..+ ....| .+
T Consensus 71 Ltqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~--~~~ia-L~ 144 (342)
T KOG1566|consen 71 LTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YEN--TPEIA-LT 144 (342)
T ss_pred HHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hcc--chHHH-HH
Confidence 35578889999999999988777777777777776532 222234444443 334444443 221 22223 33
Q ss_pred hhhhhcCC---chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC----chHHHHHhhCCC
Q 021251 89 ISSLIRHN---KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG----FPRLMLHLASSE 161 (315)
Q Consensus 89 LS~LiR~~---~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g----~v~~Lv~LL~s~ 161 (315)
.|+|.|.+ +...+.++...-+.-....++.+.=++-..|.....+++..+......+...+ +.+.--.|++++
T Consensus 145 cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~ 224 (342)
T KOG1566|consen 145 CGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE 224 (342)
T ss_pred HHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc
Confidence 44544432 34445666667777777777777778888888888888876544433333322 355577899999
Q ss_pred ChHHHHHHHHHHHHHHcCCcch
Q 021251 162 DPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
+.-.+-.++.+|+.+..+.+.+
T Consensus 225 Nyvtkrqs~kllg~llldr~N~ 246 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSNS 246 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCcH
Confidence 9999999999999998777644
No 297
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=52.28 E-value=33 Score=34.16 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=47.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTK 84 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~k 84 (315)
++..|.+-|++.++.|.-+|..+++.|+.|.- .++..|...+....|..++.+.....|+.|
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k 108 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEK 108 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHH
Confidence 46677888999999999999999999999863 345556666777778888775456666655
No 298
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=51.85 E-value=29 Score=28.25 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA 63 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~ 63 (315)
|++.|+..|..++.+|...|..++-.++... .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 5889999999999999999999999999876 565655553
No 299
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=51.06 E-value=58 Score=28.07 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=88.5
Q ss_pred HhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--hHHHHHHcCcHHHHHHh-hcCCCHHHHH
Q 021251 49 IVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GIEAFRLANGYAALRDA-LGSESVKFQR 125 (315)
Q Consensus 49 iaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--~~~~f~~~gGl~~L~~l-L~s~~~kl~~ 125 (315)
--||++.+=+.|.|.+.+..+++++.......++...+-.+|=++.+-.. ..-.+...+-+.-++.. +.-.+..+..
T Consensus 11 GDq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~ 90 (149)
T PF09758_consen 11 GDQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLS 90 (149)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHH
Confidence 35788889999999999999999999877889999999999998876433 22222345555555444 3335667777
Q ss_pred HHHHHHHHHhhc-CCcchHHHH-----hcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 126 KALNLIQYLLNE-NASDCSVVD-----KLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 126 kA~~lLs~Ll~~-~~~~~~~l~-----~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
-=..+|..|... ++.....+. +.-+...-++++.++|.-+|-++-..++++.
T Consensus 91 yYIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 91 YYISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 777777777632 222222222 2234556678888899888888877766654
No 300
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=50.84 E-value=56 Score=33.40 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=59.7
Q ss_pred hHHHHcCChHHHH-H---hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251 16 NDLHSIGGLAPLL-G---YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV-MEANGLEPLLSNFASDPDVTVRTKALGAIS 90 (315)
Q Consensus 16 ~d~~~~Ggl~~Ll-~---lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~v-le~G~l~~Ll~LL~sd~~~~vr~kAl~ALS 90 (315)
..++-.|||+.+- . --.+.+..+|..|=.+||.+++..|.. | -+.+.+.-|..-|.. ++.++|+..-.|||
T Consensus 364 ~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l---~~~d~~li~~LF~sL~~-~~~evr~sIqeALs 439 (501)
T PF13001_consen 364 RPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL---FSKDLSLIEFLFDSLED-ESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc---ccccHHHHHHHHHHhhC-cchHHHHHHHHHHH
Confidence 3455567788771 0 123468899999999999999998864 3 244677778888754 57899999999999
Q ss_pred hhhcCCchh
Q 021251 91 SLIRHNKPG 99 (315)
Q Consensus 91 ~LiR~~~~~ 99 (315)
+|+.++...
T Consensus 440 sl~~af~~~ 448 (501)
T PF13001_consen 440 SLAPAFKDL 448 (501)
T ss_pred HHHHHHhcc
Confidence 998876554
No 301
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=50.62 E-value=1.3e+02 Score=32.68 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=66.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
|.++..++...+.||..-.+.+..+-..|+..-...+..-.++.+..+ ..+..-.+|.+.++.+-.++...- ..|.
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el-~~d~~wRvr~ail~~ip~la~q~~---~~~~ 515 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL-AEDLLWRVRLAILEYIPQLALQLG---VEFF 515 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh-ccchhHHHHHHHHHHHHHHHHhhh---hHHh
Confidence 455567777888899888888877777776666666666677777777 344456777777777777765432 1222
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 105 LANGYAALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
..---+.+...+.+....++..|+.-+..++.
T Consensus 516 ~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 516 DEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 21122223333444455666666665555543
No 302
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=50.03 E-value=81 Score=25.02 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR 113 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~ 113 (315)
+.+.|...+.|++.+.- ....+ +..+.+.+... .+.-+..++|.+=+++++.......+......+++.
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~~i-----v~~i~~~i~~~-~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAKEI-----VEIIEKHIKKC-PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHHHhC-CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 66778888888887652 11222 23333444443 457889999999999999866555555556688888
Q ss_pred HhhcCCCHHHHHHHHHHHH
Q 021251 114 DALGSESVKFQRKALNLIQ 132 (315)
Q Consensus 114 ~lL~s~~~kl~~kA~~lLs 132 (315)
......++++|.|...++.
T Consensus 86 ~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 8888888999888766553
No 303
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=49.64 E-value=26 Score=26.96 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC----CCHHHHHHHH
Q 021251 64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS----ESVKFQRKAL 128 (315)
Q Consensus 64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s----~~~kl~~kA~ 128 (315)
..+.|+..++.+..+.++|...+.+|..++..+.. .+ ..||+.+..++.. ++..+...|-
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~---~i--~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGE---NI--KSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH---HH--HhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 45678888877777899999999999999876442 22 3689999888753 3444544443
No 304
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=48.79 E-value=2.5e+02 Score=26.79 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=29.2
Q ss_pred CchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCcch
Q 021251 149 GFPRLMLHLASSE--DPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 149 g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
-+-+.++.++-+. ...+|..|+.+|..+....+..
T Consensus 204 ~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 204 AWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 4567788888887 8899999999999998888764
No 305
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=48.42 E-value=2e+02 Score=29.72 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA 111 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~ 111 (315)
.+..-+..+..+|||+-. | ..++.|...+... .+..+|..|+||+..+...++.. ..++
T Consensus 502 ~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~ 562 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREI 562 (618)
T ss_dssp T-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHH
T ss_pred cCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHH
Confidence 455666666777776642 2 2466777776543 46799999999999987665532 2345
Q ss_pred HHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHH
Q 021251 112 LRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREA 168 (315)
Q Consensus 112 L~~lL~s--~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~ 168 (315)
+..++.. .+..+|..|..+ |+..+|.. .++..+...+.. ++.+|.--
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~---lm~~~P~~-------~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLI---LMRCNPSP-------SVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHH---HHHT---H-------HHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHhcCCCCChhHHHHHHHH---HHhcCCCH-------HHHHHHHHHHhhCchHHHHHH
Confidence 6666655 456777766543 34444432 355566666665 33444433
No 306
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=48.16 E-value=62 Score=29.65 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=84.1
Q ss_pred hHHHHHhhcCCCChhHHHHcCC--hHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-C-CHHHHHHcc
Q 021251 2 LDELQEHVESIDMANDLHSIGG--LAPLLGYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-N-GLEPLLSNF 73 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Gg--l~~Ll~lL~s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G-~l~~Ll~LL 73 (315)
||.+.-++-+...+..+...++ ...+..++.+ ..+..+..++.+++|+..+.+ .+..+++. + .+-..+..+
T Consensus 84 lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~ 162 (268)
T PF08324_consen 84 LDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSL 162 (268)
T ss_dssp HHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCC
T ss_pred HhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHH
Confidence 4455555555555555554442 3444444432 578899999999999998654 55666655 3 344444444
Q ss_pred cCCC---CHHHHHHHHHHhhhhhcC---CchhHHHHHHcCcHHHHHHhhc-C-CCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 74 ASDP---DVTVRTKALGAISSLIRH---NKPGIEAFRLANGYAALRDALG-S-ESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 74 ~sd~---~~~vr~kAl~ALS~LiR~---~~~~~~~f~~~gGl~~L~~lL~-s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
.... +..+|..+...+-|++-. .....+. ...-+..+.+.+. . .++...-|++-++..|+..++......
T Consensus 163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~--~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~ 240 (268)
T PF08324_consen 163 LSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW--QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLA 240 (268)
T ss_dssp CTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH--HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 4432 567887777777665321 1100000 0012445555333 2 689999999999999996544433333
Q ss_pred HhcCch
Q 021251 146 DKLGFP 151 (315)
Q Consensus 146 ~~~g~v 151 (315)
...|+-
T Consensus 241 ~~l~~~ 246 (268)
T PF08324_consen 241 KSLDVK 246 (268)
T ss_dssp CCCTHH
T ss_pred HHcChH
Confidence 333443
No 307
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=48.05 E-value=43 Score=39.49 Aligned_cols=59 Identities=10% Similarity=0.271 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcC---CHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEAN---GLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G---~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
+...-..-..+|+.++++++..+..+.+.. .++.|+.++....+..+|...+.+|++++
T Consensus 577 e~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 577 EVEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 444555667789999999999999998763 68999999998888899999999999995
No 308
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.94 E-value=62 Score=35.06 Aligned_cols=101 Identities=25% Similarity=0.196 Sum_probs=69.6
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
+..|-.+ ..++=+.|+.+|+..|-.|..+.+.... +-+..++.-|..+..|+-.+|..+|..|...+|.-+.++
T Consensus 306 ievLe~l-S~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEEL-SKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHH-ccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 4444444 5677789999999999999988776433 346678889999999999999999999998888655443
Q ss_pred HhcCchHHHHHhhCCCChH--HHHHHHHHHHHHH
Q 021251 146 DKLGFPRLMLHLASSEDPD--VREAALRGLLELA 177 (315)
Q Consensus 146 ~~~g~v~~Lv~LL~s~d~~--v~e~aL~aL~~L~ 177 (315)
+ ..+..++=.++.. .+-+|+.+|.++.
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhH
Confidence 3 2344444333333 2344555555554
No 309
>PLN03205 ATR interacting protein; Provisional
Probab=47.80 E-value=1.6e+02 Score=29.83 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=95.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhcCCHH---HHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEANGLE---PLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN---Np~~Q~~vle~G~l~---~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+++|+.+..-++..+-.++..++-.+-|+ |.+--++-.+.+++. .+.++--..+.+.||..|+.-.--+++...
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 46677777778888888888877655442 222112222233332 233332223566788888776655555433
Q ss_pred h--hHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHH---------------------hcC---c
Q 021251 98 P--GIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVD---------------------KLG---F 150 (315)
Q Consensus 98 ~--~~~~f~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~---------------------~~g---~ 150 (315)
+ ..+.|.....+..+.++|+.+ ...+|..|+.++.-|+. -|..-.+|+ ..| +
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsI 483 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKI 483 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHHHHH
Confidence 2 346776666778888888875 48999999988876653 222222221 112 3
Q ss_pred hHHHHHhhCC-----CChHHHHHHHHHHHHHHcCCcch
Q 021251 151 PRLMLHLASS-----EDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 151 v~~Lv~LL~s-----~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
+..|.+++.. .+++++..+...|.-++..+..+
T Consensus 484 legLAeCiac~~~s~~dIeLck~aiimLAflASSGk~G 521 (652)
T PLN03205 484 FEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSG 521 (652)
T ss_pred HHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCC
Confidence 4556666654 57889999998888888777644
No 310
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.58 E-value=57 Score=35.43 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH--HcCcHHHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR--LANGYAAL 112 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGl~~L 112 (315)
..-+|.+.+|+||.-+.- ++... ++.-.-..++++++...|..||..++.++.-++-+..-..+.|. ..+-+..+
T Consensus 500 ~RiiRRRVa~ilg~Wvsv--q~~~e-~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSV--QQKLE-LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred hhHHHHHHHHHHhhhhhe--echHh-HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 345999999999977652 11111 12223456788887656888999999999999887766666664 24666667
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--CChHHHHHHHHHHHHHHc
Q 021251 113 RDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLLELAR 178 (315)
Q Consensus 113 ~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~~ 178 (315)
..+++. .....|...+.+++.|+..-.+..+-.. ..++..+-.+.+. ++.-+|-+.+.+|.++++
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~ 644 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVN 644 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Confidence 777765 4467777888888888754322211000 0112222222221 445566666667766654
No 311
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=45.22 E-value=54 Score=35.81 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC-----Cch-hHHHHHHcCcHHHHHHhh
Q 021251 55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH-----NKP-GIEAFRLANGYAALRDAL 116 (315)
Q Consensus 55 ~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~-----~~~-~~~~f~~~gGl~~L~~lL 116 (315)
.+.+.+-+...+++|+.++....++.++.+|-..|+.++|. .+. ...++.....+..|+..+
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 45566667789999999998887889999999999999887 333 334454555555554444
No 312
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=44.55 E-value=1.3e+02 Score=27.61 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHcCChH-HHHHhhcCCCHHHHHHHHHHHHHHh--------------------------hCCHHHHHHHHhc---CCHH
Q 021251 18 LHSIGGLA-PLLGYLKNSHANIRAKAGEVVTTIV--------------------------QNNPRSQQLVMEA---NGLE 67 (315)
Q Consensus 18 ~~~~Ggl~-~Ll~lL~s~~~~vR~~Aa~~Lgtia--------------------------qNNp~~Q~~vle~---G~l~ 67 (315)
...+..+. .++..+.+.++.||-.|.+.+..++ .|+|.....-++. +.+.
T Consensus 38 W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~ 117 (239)
T PF11935_consen 38 WESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLD 117 (239)
T ss_dssp HHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHH
Confidence 33333343 4457788889999999998887553 2333333323332 5788
Q ss_pred HHHHcccCCC-CHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 68 PLLSNFASDP-DVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 68 ~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
.|+..+..+. +..+-...+.+|+.|+|.-+.....+
T Consensus 118 ~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~I 154 (239)
T PF11935_consen 118 RLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRI 154 (239)
T ss_dssp HHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8899988776 67788889999999999877654444
No 313
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=43.99 E-value=1.5e+02 Score=27.70 Aligned_cols=83 Identities=25% Similarity=0.142 Sum_probs=56.9
Q ss_pred HHHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcCCc------------ch----HHHHhcCchH
Q 021251 100 IEAFRLANGYAALRDALGS-----------ESVKFQRKALNLIQYLLNENAS------------DC----SVVDKLGFPR 152 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s-----------~~~kl~~kA~~lLs~Ll~~~~~------------~~----~~l~~~g~v~ 152 (315)
..+|.+.+.+.++++.+.. .|..+...++.++++++.-.+. .+ ..+.+.|+..
T Consensus 102 K~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~ 181 (266)
T PF04821_consen 102 KEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLD 181 (266)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHH
Confidence 3456666666766665521 3578899999999999864211 01 2445679999
Q ss_pred HHHHhhCCC-ChHHHHHHHHHHHHHHcCCcc
Q 021251 153 LMLHLASSE-DPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 153 ~Lv~LL~s~-d~~v~e~aL~aL~~L~~~~~~ 182 (315)
-|+.+..+. ..++....+..+..|.++...
T Consensus 182 lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 182 LLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 999988885 456667888888888777653
No 314
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=43.95 E-value=1.8e+02 Score=34.68 Aligned_cols=143 Identities=12% Similarity=0.142 Sum_probs=87.7
Q ss_pred CChHHHHHhh----cCCCHHHHHHHHHHHHHHhhC--------CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHh
Q 021251 22 GGLAPLLGYL----KNSHANIRAKAGEVVTTIVQN--------NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAI 89 (315)
Q Consensus 22 Ggl~~Ll~lL----~s~~~~vR~~Aa~~LgtiaqN--------Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~AL 89 (315)
..|..+-..+ .+++..|+..|...|..++.. |-+.|+ ..+.++..++.+..+.++|...+-++
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQk-----efLkPfe~im~~s~~~eVrE~ILeCv 1207 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQN-----EFMKPFVIVMRKSNAVEIRELIIRCV 1207 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHH-----HHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 3454454433 235677888888888776652 113344 35567777777777889999999999
Q ss_pred hhhhcCCchhHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhcCchHHHHHhhCC
Q 021251 90 SSLIRHNKPGIEAFRLANGYAALRDALGS----ESVKFQRKALNLIQYLLNENASD-----CSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 90 S~LiR~~~~~~~~f~~~gGl~~L~~lL~s----~~~kl~~kA~~lLs~Ll~~~~~~-----~~~l~~~g~v~~Lv~LL~s 160 (315)
..|+..+.. .+ + .||..+..++.. ++..+-..|-..+..++.+.-.. ...+ ..+|..|.++...
T Consensus 1208 ~qmI~s~~~---nI-k-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q 1280 (1780)
T PLN03076 1208 SQMVLSRVN---NV-K-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNS 1280 (1780)
T ss_pred HHHHHHHHh---hh-h-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhC
Confidence 999865432 22 2 499999999873 45777777777777666532110 1112 1345555555544
Q ss_pred C-ChHHHHHHHHHHHHH
Q 021251 161 E-DPDVREAALRGLLEL 176 (315)
Q Consensus 161 ~-d~~v~e~aL~aL~~L 176 (315)
. +.++--.|+..|+.+
T Consensus 1281 ~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1281 RFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcccccHHHHHHHHHH
Confidence 3 355555666666655
No 315
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=43.71 E-value=3e+02 Score=26.64 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC----------CChHHHHHHHHHHHHHHcCCcchh
Q 021251 120 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS----------EDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 120 ~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s----------~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
+..+....+.++.+|+.+..-..+.-... +++.++.++-+ ++..+|+.|.+.|..+++......
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~-Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y 303 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQ-LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY 303 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHH-HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45566667778888887543333322222 77777776632 345799999999999998876554
No 316
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.70 E-value=3.2e+02 Score=29.70 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=86.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhh-CCH----HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQ-NNP----RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~Lgtiaq-NNp----~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
|.+-|+-.|..||..|+.++=++-- -.| +-.+.+++. -+..|..+|.+ +.+.||..|+--++-++..+ .
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~f----W 252 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLED-PYPMVRSTAILGVCKITSKF----W 252 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcC-CCchHHHHHHHHHHHHHHHH----H
Confidence 3366777899999999999865521 011 222333332 24567888765 58899999988888765332 1
Q ss_pred HHHHcC----cHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 102 AFRLAN----GYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 102 ~f~~~g----Gl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
.++-.. -+..+.+-+.. ....+|-....-|.+++. +|.....+. . +++.+-..+......+|-++...|+.|
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le-~-~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLE-Q-LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHH-H-HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 221111 11222222222 346777777777888876 344333332 2 234566666667788888888888877
Q ss_pred HcCCc
Q 021251 177 AREKA 181 (315)
Q Consensus 177 ~~~~~ 181 (315)
-....
T Consensus 330 k~vra 334 (1005)
T KOG1949|consen 330 KAVRA 334 (1005)
T ss_pred Hhhhh
Confidence 65554
No 317
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=43.64 E-value=98 Score=24.09 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHHHhhhh
Q 021251 34 SHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSL 92 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqN----Np~~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~ALS~L 92 (315)
++-.+|..|+.+|+.++.+ ++..|. .++..|.+.|.+ ..+...+--|+..|+.+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~-----Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQP-----RITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999875 333333 345567776653 35667888888888887
No 318
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=42.94 E-value=2.5e+02 Score=26.84 Aligned_cols=138 Identities=14% Similarity=0.201 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC---CCHHHH-HHHHHHhhhhhcCC----chhHHHHHHcCc
Q 021251 37 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD---PDVTVR-TKALGAISSLIRHN----KPGIEAFRLANG 108 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd---~~~~vr-~kAl~ALS~LiR~~----~~~~~~f~~~gG 108 (315)
.||..-..++.+.+++.+... .+....+++|+..+-.| ..+..| ...+..++.+++.- .+....+. ...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence 488888999999998766432 25566888888854322 111222 23344444444432 22233333 356
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhc------CchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 109 YAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKL------GFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 109 l~~L~~lL~s~---~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~------g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+...+..+..+ -+..+..--.+|+++...... .+... -++..++--+++.+.++.+.++.+|..+.+.
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~---~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFP---ALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTH---HHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHH---HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 66777777653 389999888899998875322 22222 4677788888999999999999999888654
Q ss_pred C
Q 021251 180 K 180 (315)
Q Consensus 180 ~ 180 (315)
.
T Consensus 196 ~ 196 (319)
T PF08767_consen 196 V 196 (319)
T ss_dssp H
T ss_pred H
Confidence 4
No 319
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=41.35 E-value=1.8e+02 Score=26.86 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=19.6
Q ss_pred cCchHH-HHHhhCCCCh---HHHHHHHHHHHHHHcCCcc
Q 021251 148 LGFPRL-MLHLASSEDP---DVREAALRGLLELAREKAD 182 (315)
Q Consensus 148 ~g~v~~-Lv~LL~s~d~---~v~e~aL~aL~~L~~~~~~ 182 (315)
.+.+|. +..+|.++.. .+...++..|.++++....
T Consensus 165 SAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~ 203 (255)
T PF10350_consen 165 SAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPST 203 (255)
T ss_pred cCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcc
Confidence 334444 3445555322 5667777777777766543
No 320
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=40.72 E-value=22 Score=28.97 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHH
Q 021251 85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ 124 (315)
Q Consensus 85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~ 124 (315)
++-.++.++. +|..+..|++.|+++.|+.+|.+++..+-
T Consensus 66 ~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 66 EIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3444455543 47789999999999999999998776543
No 321
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.08 E-value=1.1e+02 Score=28.46 Aligned_cols=49 Identities=24% Similarity=0.427 Sum_probs=28.9
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHc
Q 021251 22 GGLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 72 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~--~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~L 72 (315)
|-+.+|.+++++++. -+|..|..+++.++..+|..++.++++ +..++.-
T Consensus 111 G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~--f~~ll~~ 161 (249)
T PF06685_consen 111 GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY--FRELLNY 161 (249)
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHH
Confidence 345556666655433 366666666666666666666666665 4444444
No 322
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=39.93 E-value=4e+02 Score=29.27 Aligned_cols=101 Identities=10% Similarity=0.095 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch--------HHHHhcCch
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC--------SVVDKLGFP 151 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~--------~~l~~~g~v 151 (315)
...-.++.++-.++.++-.........-++-.++.+|....+.+...++.+++.+|--...+- ..+.+..-+
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~v 286 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPV 286 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcch
Confidence 344455666666554433322222344568888899988888899999999999986443321 122233333
Q ss_pred ---HHHHHhhCC-CChHHHHHHHHHHHHHHcCC
Q 021251 152 ---RLMLHLASS-EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 152 ---~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~ 180 (315)
..+|..|.. ++..++-.+...+-.+++.-
T Consensus 287 eRF~piv~gl~~~e~~~l~vacmq~INal~t~p 319 (1102)
T KOG1924|consen 287 ERFRPIVEGLDFLEKQQLQVACMQFINALVTSP 319 (1102)
T ss_pred hhhhhHHHHHhccchHHHHHHHHHHHHHhcCCH
Confidence 345666655 45666666666666665443
No 323
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.92 E-value=27 Score=28.49 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=28.6
Q ss_pred HHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHH
Q 021251 5 LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAK 41 (315)
Q Consensus 5 L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~ 41 (315)
|.-|....+.=-.|+++|+++.|+.+|.++|.+|...
T Consensus 70 l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 70 LSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 4444555566667999999999999999999887543
No 324
>PLN03205 ATR interacting protein; Provisional
Probab=37.15 E-value=1.3e+02 Score=30.34 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHhh-CCHHH-HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH-------
Q 021251 34 SHANIRAKAGEVVTTIVQ-NNPRS-QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR------- 104 (315)
Q Consensus 34 ~~~~vR~~Aa~~Lgtiaq-NNp~~-Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~------- 104 (315)
....||-.|.+++-.|+- .|++. ++.|-..-.++.+-++|+.+.-.-|+..|+.-+=-| -+++.-...|.
T Consensus 384 TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL-LNCpklL~iFcSg~~e~~ 462 (652)
T PLN03205 384 TEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL-LNCPKLYDRFDSLHEEKN 462 (652)
T ss_pred chhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH-HcCcHHHHHHhcCCcccc
Confidence 456688888888876544 35554 344444567788888888776667777766543211 12222222221
Q ss_pred -------------HcCcHHH----HHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHH------hcCchHHHHH
Q 021251 105 -------------LANGYAA----LRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVD------KLGFPRLMLH 156 (315)
Q Consensus 105 -------------~~gGl~~----L~~lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~~~l~------~~g~v~~Lv~ 156 (315)
...|++. |.+++.. .+.++.+++..+|.+++.++....+++. +.+|+..+++
T Consensus 463 ~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILq 542 (652)
T PLN03205 463 SSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILH 542 (652)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHH
Confidence 1224443 3444433 4689999999999999988776655544 3356666666
Q ss_pred hhC
Q 021251 157 LAS 159 (315)
Q Consensus 157 LL~ 159 (315)
+|-
T Consensus 543 vLv 545 (652)
T PLN03205 543 LLV 545 (652)
T ss_pred HHH
Confidence 553
No 325
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.17 E-value=1.9e+02 Score=23.08 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=47.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 108 GYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 108 Gl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
-+|.+...|. +....++.-+-..++.|+...+-..+.+. .+++.++.-...... ...++.+|..+++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~--~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLN--ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHH--HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3678888888 77789999999999999876555444333 234444444333333 577888898888665
No 326
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.01 E-value=6.3e+02 Score=27.87 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC-CchhHHHHHH--------
Q 021251 36 ANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRH-NKPGIEAFRL-------- 105 (315)
Q Consensus 36 ~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~-------- 105 (315)
......+..|+-++.-| -.--..|+.. ..+-.|...++. ..+...+.++-.+|.+|-- ...+++.++.
T Consensus 206 ~k~~~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldp-r~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~ 283 (1102)
T KOG1924|consen 206 IKNLQEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDP-REPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEA 283 (1102)
T ss_pred HHHHHHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCc-cCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhh
Confidence 34566677777666643 3332333322 334445555543 2345556666666654432 2333333322
Q ss_pred --cCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcc-------hHHHHhcCchHHHHHhhC
Q 021251 106 --ANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASD-------CSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 106 --~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~-------~~~l~~~g~v~~Lv~LL~ 159 (315)
..-+..|+++|... +..++.-+..+|..|... +.+ +..+...|+-..|-.+-.
T Consensus 284 ~~veRF~piv~gl~~~e~~~l~vacmq~INal~t~-p~dldfRlhlR~E~mr~gL~~~l~~l~~ 346 (1102)
T KOG1924|consen 284 KPVERFRPIVEGLDFLEKQQLQVACMQFINALVTS-PSDLDFRLHLRSEFMRDGLHKYLPDLTE 346 (1102)
T ss_pred cchhhhhhHHHHHhccchHHHHHHHHHHHHHhcCC-HHHhhHHHHHHHHHHHHhHHHHHHHhhh
Confidence 23466788888775 577777777778777754 332 234555566555544433
No 327
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=35.91 E-value=1.7e+02 Score=24.78 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=53.7
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcC-CHHHHHH-cccCCC-CHHHHHHHHHHhhhhh
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EAN-GLEPLLS-NFASDP-DVTVRTKALGAISSLI 93 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G-~l~~Ll~-LL~sd~-~~~vr~kAl~ALS~Li 93 (315)
+++....+.+++.+.+++..+-..++.++.++... .+..+- +.+ .+..++. ++.++. +...|+-++-++..++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 33445566666666666788888899999888854 222211 223 2344444 556543 3467888999999999
Q ss_pred cCCchhHHHHHHc
Q 021251 94 RHNKPGIEAFRLA 106 (315)
Q Consensus 94 R~~~~~~~~f~~~ 106 (315)
+...-..+.|+..
T Consensus 146 ~~p~~l~~lf~NY 158 (168)
T PF12783_consen 146 KDPQFLVDLFVNY 158 (168)
T ss_pred hChhHHHHHHHHc
Confidence 8755555555543
No 328
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.66 E-value=58 Score=19.33 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHh
Q 021251 37 NIRAKAGEVVTTIV 50 (315)
Q Consensus 37 ~vR~~Aa~~Lgtia 50 (315)
.+|..|+++||.+.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 48999999999983
No 329
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=35.66 E-value=1.7e+02 Score=29.68 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC-------CHHHHHHHHHHhhhhhcCCchhHHHHHHcC
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-------DVTVRTKALGAISSLIRHNKPGIEAFRLAN 107 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~-------~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 107 (315)
+..+-..|.+|+.|++-+.+.+|+.+++.....++++.+.... ..-.-.+.++-++.+=. ..-.+.+...+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--~~Rsql~~~l~ 187 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--DHRSQLIAELL 187 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--HHHHHHHHHhc
Confidence 4578999999999999999999999999998888888875431 12233466677766532 22234556889
Q ss_pred cHHHHHHhhcC
Q 021251 108 GYAALRDALGS 118 (315)
Q Consensus 108 Gl~~L~~lL~s 118 (315)
|++.+...|.+
T Consensus 188 Gl~~lt~~led 198 (532)
T KOG4464|consen 188 GLELLTNWLED 198 (532)
T ss_pred ccHHHHHHhhc
Confidence 99999999865
No 330
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=35.10 E-value=1.4e+02 Score=34.77 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=67.2
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhH
Q 021251 113 RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDN 192 (315)
Q Consensus 113 ~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~ 192 (315)
-.+|.+.+..++.-+..+..++....+ ...+..+|..|+..+.++...-...|+.+|..|+..++.....+
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f----- 511 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF----- 511 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH-----
Confidence 344678899999999998888887653 24455688899999988777777899999999998776544333
Q ss_pred HHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251 193 EKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE 234 (315)
Q Consensus 193 ~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~ 234 (315)
-..|..-+..+..++. .+-+.+.+-|...+|+.
T Consensus 512 ---a~~l~giLD~l~~Ls~------~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 512 ---ATFLKGILDYLDNLSL------QQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp ---HHHHHGGGGGGGG--H------HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCCH------HHHHHHHHHHHHHhcCC
Confidence 3344445555554432 23344455556666665
No 331
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=35.08 E-value=4.3e+02 Score=25.66 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=85.1
Q ss_pred HcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHc-ccCC-------CCHHHHHHHHHHh
Q 021251 20 SIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSN-FASD-------PDVTVRTKALGAI 89 (315)
Q Consensus 20 ~~Ggl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~L-L~sd-------~~~~vr~kAl~AL 89 (315)
+...++.|..+=. ...+++|..+.+.+.++.+. .++.++.+ ....+++++ +... .-+.--+.-++.|
T Consensus 7 ~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~---~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~l 83 (353)
T PF10257_consen 7 QHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQ---SQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNTL 83 (353)
T ss_pred HhChHHHHHHHHcccCChHHHHHHHHHHHHHHHh---cccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 4455677776643 46789999999999999885 33445555 566777777 4321 1234456889999
Q ss_pred hhhhcCCchhHHHHHHcCc--------------------------HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CCc
Q 021251 90 SSLIRHNKPGIEAFRLANG--------------------------YAALRDALGSESVKFQRKALNLIQYLLNE---NAS 140 (315)
Q Consensus 90 S~LiR~~~~~~~~f~~~gG--------------------------l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~---~~~ 140 (315)
+.-+|.++.-...|...+. +..|+..++++ -++-.+|...+-.++.- ++.
T Consensus 84 c~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~~~ 162 (353)
T PF10257_consen 84 CSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASEDPA 162 (353)
T ss_pred HHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCCcH
Confidence 9999998887777765432 45677777776 55666666666555543 333
Q ss_pred chHHHHh-cCchHHHH
Q 021251 141 DCSVVDK-LGFPRLML 155 (315)
Q Consensus 141 ~~~~l~~-~g~v~~Lv 155 (315)
..+.+++ ..+++.+.
T Consensus 163 ~~~~i~~~S~fc~~la 178 (353)
T PF10257_consen 163 LAQYIVEHSDFCPVLA 178 (353)
T ss_pred HHHHHHHcchhHHHHH
Confidence 3445555 45555444
No 332
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=34.11 E-value=2.7e+02 Score=28.11 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH----HHHHcCcHH
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE----AFRLANGYA 110 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~----~f~~~gGl~ 110 (315)
|+-+-.--..++.++-..-...-..++.. ....+-...++..++..---..-+||.++|....... .| +..-++
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~-E~~L~P 120 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQF-EEALFP 120 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HH-HHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHH-HHHHHH
Confidence 44455555555555444322222333333 3333333445556778888888899999886433222 33 456789
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cc-----h---------HHHHhcCchHHHHHhhCC
Q 021251 111 ALRDALGSESVKFQRKALNLIQYLLNENA-SD-----C---------SVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~-----~---------~~l~~~g~v~~Lv~LL~s 160 (315)
++..+|+.+...+.-.+..+++.|+...+ .. . ......|-|+.++.+|..
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH
Confidence 99999999988888888999999987665 11 1 122344888999988864
No 333
>PRK14707 hypothetical protein; Provisional
Probab=34.09 E-value=3.7e+02 Score=32.98 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=92.3
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 24 LAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 24 l~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
+..+++-|.. ++..+...|+..|+.-.-..+..++ -++..++...++-|+.=++..+-..|..+|..=+-+...-.+.
T Consensus 333 ~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~ 411 (2710)
T PRK14707 333 LSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKG 411 (2710)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhh
Confidence 3344444433 6777777777777655444565544 3556678888888877666666677777777655565665555
Q ss_pred HHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251 103 FRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 173 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL 173 (315)
| +..|+.-++..|+. ++..+-..++..|.--+..+.+.++.+.-.++...|-.+-+=+|..+...+...|
T Consensus 412 ~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~L 482 (2710)
T PRK14707 412 L-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASAL 482 (2710)
T ss_pred c-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHH
Confidence 5 55677777787776 7888888888877766655566555554445444444333335555554444333
No 334
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.63 E-value=5.7e+02 Score=26.60 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCcccccceeecCCCCCCCc
Q 021251 192 NEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPP 254 (315)
Q Consensus 192 ~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~ 254 (315)
+.++...++++...+.. .+.+++-|+|.|-+=+..||. ++.|.++.+-|
T Consensus 167 e~~~~ki~~n~~~~~~~----~~~e~k~eiE~~~~Ei~~cm~----------ilvp~~~d~~P 215 (661)
T KOG2374|consen 167 EMKTKKILRNKFDSLRV----SFGEFKYEIEVTIKEIKECME----------ILVPRGDDGVP 215 (661)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHH----------hhcccCCCCCc
Confidence 44556666766666553 577888899999777889985 35676666555
No 335
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.75 E-value=1.1e+02 Score=34.70 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC---CChHHHHHHHHHHHHH
Q 021251 100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS---EDPDVREAALRGLLEL 176 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s---~d~~v~e~aL~aL~~L 176 (315)
.+.+...|.+.+|++.+-...+|+|..-+.++..++..++...+.+...|.++.|++++.- ++.++.-+++.++.-|
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 4566678999999999988999999999999999999999999999999999998887753 5666666666555444
No 336
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=32.59 E-value=3.4e+02 Score=23.76 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHH
Q 021251 121 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLG 200 (315)
Q Consensus 121 ~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~ 200 (315)
..+|.-|-.++..|+........ +. .+...+..=|.. +.+++.-+...|..|+...+..+..-+..--..|+..|.
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 67888888888888864333222 11 234455555544 999999999999999999987663322333455566666
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHHHHHHH
Q 021251 201 ERIKGISLMSPEDLGAAREERHLVDSLWNAC 231 (315)
Q Consensus 201 ~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~ 231 (315)
...+. .++++|+|--+++.+.+
T Consensus 117 ~k~k~---------~AvkQE~Ek~~E~~rs~ 138 (169)
T PF08623_consen 117 KKLKE---------NAVKQEIEKQQELIRSV 138 (169)
T ss_dssp ----T---------TS-HHHHHHHHHHHHHH
T ss_pred ccCCC---------CcccccHHHHHHHHHHH
Confidence 54443 23566666665555543
No 337
>PRK14707 hypothetical protein; Provisional
Probab=32.56 E-value=3.8e+02 Score=32.86 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=87.5
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 23 GLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 23 gl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
|+..+++-|.. ++..+...|+..|+.-.-+.+..++.+ +..++..+++-|++=++..+-..|..+|.--+-|....++
T Consensus 374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~ 452 (2710)
T PRK14707 374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCK 452 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHh
Confidence 56666666644 888888899999987777788877654 5556777788877767788888899999987777777666
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHH-HHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH
Q 021251 102 AFRLANGYAALRDALGS-ESVKFQ-RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD 164 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s-~~~kl~-~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~ 164 (315)
.|- ..++...+..|+. +|..+- .-|-.+...|.. ++..++.+.-.++...|-.|=+-++..
T Consensus 453 ~~~-p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~ 515 (2710)
T PRK14707 453 ALD-PINVTQALDALSKWPDTPICGQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTP 515 (2710)
T ss_pred hcC-hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcH
Confidence 663 3456666666665 554444 344344444543 333333333333444444333334433
No 338
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=31.96 E-value=3.7e+02 Score=23.93 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=50.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
+|.+..=|+......|-.|...+..+.+. ...+.++-. ..+.+|-.-|.+ .+++|...++.+|..|++.++..-.
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNT-RDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45556666666666777787777777665 112333332 355666666665 5899999999999999877655433
Q ss_pred HH
Q 021251 102 AF 103 (315)
Q Consensus 102 ~f 103 (315)
+.
T Consensus 117 aL 118 (183)
T PF10274_consen 117 AL 118 (183)
T ss_pred HH
Confidence 33
No 339
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.71 E-value=6e+02 Score=26.01 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=38.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhh
Q 021251 31 LKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISS 91 (315)
Q Consensus 31 L~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~ 91 (315)
++|+...=-.+|..++-.|..|. .++-+.+-+...+.-||+++.- -++..|+.+.+--|=+
T Consensus 54 iqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfs 120 (594)
T KOG1086|consen 54 IQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFS 120 (594)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhh
Confidence 34555555566777777888763 4555555566777888888753 2456777776554443
No 340
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=30.06 E-value=6.1e+02 Score=25.86 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=92.6
Q ss_pred ChHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc--c-------CCCCHHHHHHHHHHhhhh
Q 021251 23 GLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF--A-------SDPDVTVRTKALGAISSL 92 (315)
Q Consensus 23 gl~~Ll~lL~s~~-~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL--~-------sd~~~~vr~kAl~ALS~L 92 (315)
.+..|...|.++. ...|......|..++.+ ..+-+-+.....+.+|+.+- . ..++..|...|+-+|+|+
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 3556666665533 44555555555444432 11111111112223333331 1 124568899999999999
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC----
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGS--------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS---- 160 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s--------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s---- 160 (315)
+-|+..++..|+...-...+...+.+ +..-.-.|-+|++..+=. ..-.+.+.+.+.++.+-..+..
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--~~Rsql~~~l~Gl~~lt~~led~lgi 202 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--DHRSQLIAELLGLELLTNWLEDKLGI 202 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--HHHHHHHHHhcccHHHHHHhhccccC
Confidence 99999999999987765555544322 224566677787777643 2223456677777777777754
Q ss_pred -----------CChHHHHHHHHHHHHHHcCCcchh
Q 021251 161 -----------EDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 161 -----------~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
.+.+..-.+|.++.++..++....
T Consensus 203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ 237 (532)
T KOG4464|consen 203 DSEINVPPLNPQETNRACEALKVFFNVTCDSDKDV 237 (532)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhheeecccccc
Confidence 123344566777777777765444
No 341
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.86 E-value=1.5e+02 Score=23.85 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251 109 YAALRDALGSES----VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 173 (315)
Q Consensus 109 l~~L~~lL~s~~----~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL 173 (315)
+..+.++|.... ..+...+..++.+.+.. .....+.+.++++.+..++.+++. ++.|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 455555555432 88999999999998873 445667777899999999955444 88877664
No 342
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=28.35 E-value=1.2e+02 Score=28.35 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCC-------HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH-HHcCc
Q 021251 37 NIRAKAGEVVTTIVQNNPRSQQLVMEANG-------LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF-RLANG 108 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~-------l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gG 108 (315)
.=|..|..+++.++-.. .+.+-++..+- +..|.+++....+...|.-|+--|++++++.......+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35788899998776422 22345555543 34456666666788999999999999999987765443 36678
Q ss_pred HHHHHHhhcCCC
Q 021251 109 YAALRDALGSES 120 (315)
Q Consensus 109 l~~L~~lL~s~~ 120 (315)
+..|+.++...+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 888888876544
No 343
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.33 E-value=2.5e+02 Score=21.40 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=41.3
Q ss_pred ChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc---CCCCHHHHHHHHHH
Q 021251 23 GLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SDPDVTVRTKALGA 88 (315)
Q Consensus 23 gl~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~---sd~~~~vr~kAl~A 88 (315)
-+.|+..++ ++.+.++|.....+|..+++++.. -++.| .+.++.++. .+.++.+...|.-.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SG-W~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSG-WKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 466777775 457999999999999999997542 24665 556666654 33455555555443
No 344
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=28.16 E-value=4.3e+02 Score=25.39 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=60.6
Q ss_pred hcCCHHHHHHcccCC-CCHHHHHHHHHHhhhhhcCCch-hHHHHH-HcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHh
Q 021251 62 EANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKP-GIEAFR-LANGYAALRDALGSE---SVKFQRKALNLIQYLL 135 (315)
Q Consensus 62 e~G~l~~Ll~LL~sd-~~~~vr~kAl~ALS~LiR~~~~-~~~~f~-~~gGl~~L~~lL~s~---~~kl~~kA~~lLs~Ll 135 (315)
+.|.+.+++..+..+ .+...|-.-..|+=+..|+.+. ..+.|+ +.|-+..++..+-++ +..+.+-.--+|+.|+
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 348888899888765 4667888999999999999888 566666 555567777665543 3568888888999999
Q ss_pred hcCCcch
Q 021251 136 NENASDC 142 (315)
Q Consensus 136 ~~~~~~~ 142 (315)
..+...-
T Consensus 173 K~n~~~f 179 (303)
T PF12463_consen 173 KFNRDAF 179 (303)
T ss_pred CCCHHHH
Confidence 8765543
No 345
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.07 E-value=8.9e+02 Score=29.43 Aligned_cols=145 Identities=14% Similarity=-0.030 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhhhcCCchhHH-HHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHH
Q 021251 80 TVRTKALGAISSLIRHNKPGIE-AFRLA--NGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLM 154 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~-~f~~~--gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~L 154 (315)
..++.+++.|+++.++--.... .+.+. +-+..+...+..+....+..|+|+|..++..-|......++. +-.+.+
T Consensus 424 ~~~v~~l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~p~as~r~~aaw~Lrcll~~~P~~l~p~id~~~~~~e~~ 503 (2067)
T KOG1822|consen 424 HLQVAALAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRHPVASARLEAAWLLRCLLNAMPSYLTPTIDRFLERLEHL 503 (2067)
T ss_pred HHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCchhhhHHHHHHhccchhH
Confidence 4567889999999888654433 33222 234445555666778899999999999998877755444433 555566
Q ss_pred HHhhCCCC--hHHHHHHHHHHHHH-HcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHH
Q 021251 155 LHLASSED--PDVREAALRGLLEL-AREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNAC 231 (315)
Q Consensus 155 v~LL~s~d--~~v~e~aL~aL~~L-~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~ 231 (315)
.+.+++.. ....-.|+.+|... +..++..+. -...+..++-...-++.+.. +.....-..+.+|.|+...
T Consensus 504 ~kq~~s~~~~~sg~S~aiaaLl~~~~~~~plgIp------~~k~~~v~~~Aedllkt~aq-nsr~s~~kt~~gWlLi~aL 576 (2067)
T KOG1822|consen 504 FKQLRSSPEAVSGFSFAIAALLAGVVVSCPLGIP------HAKGLKVLNFAEDLLKTAAQ-NSRLSLAKTLAGWLLISAL 576 (2067)
T ss_pred HHHhhccHHHHHHHHHHHHHHHhhhhhcCCCccc------hhhHHHHHHHHHHHHHhhcc-ChhHHHHHHHhhHHHHHHH
Confidence 66665532 33445555566555 556654431 11112222222222222211 2233344466788887744
No 346
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.74 E-value=3.7e+02 Score=22.67 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc
Q 021251 36 ANIRAKAGEVVTTIVQNNPRS---------QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 106 (315)
Q Consensus 36 ~~vR~~Aa~~LgtiaqNNp~~---------Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 106 (315)
...|..+.++|-++-.++... -..+++....+.|++.+.++ +..+-..++..+..+.+++....+.=++
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~~~Lk~ele- 113 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFRSHLKLELE- 113 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345556666665554443221 12345667888888888764 4788888999999888765433221111
Q ss_pred CcHHHHHH-hhcCCC--HHHHHHHHHHHHHHhhcC
Q 021251 107 NGYAALRD-ALGSES--VKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 107 gGl~~L~~-lL~s~~--~kl~~kA~~lLs~Ll~~~ 138 (315)
--++.+.. ++.++. ..-|.-++.++..++...
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 12333333 666554 467777888899998643
No 347
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=27.69 E-value=6.4e+02 Score=25.35 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=86.9
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
++|.+.++..-. ..+.. .|...-.++.. ...+.|..|...+-.+++..... -.....-.+..+ .--..+.+...
T Consensus 12 ~~l~~~i~~~~~-~~i~~--iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I-~~~~~~~d~~~ 86 (464)
T PF11864_consen 12 EELCESIQKYPL-SSIEE--IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMRAEFFRDI-SDPSNDDDFDL 86 (464)
T ss_pred HHHHHHHHhCCc-hHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHH-hcCCCchhHHH
Confidence 444444444433 22222 34444456654 46779999999999998864321 011111111111 11122334567
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC---------------------------CCHHHHHHHHHHHHHH
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---------------------------ESVKFQRKALNLIQYL 134 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s---------------------------~~~kl~~kA~~lLs~L 134 (315)
+.+|+.+|++ |.... .+.+....+.|...|.. .+.+.-.....++.++
T Consensus 87 ~l~aL~~LT~---~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 87 RLEALIALTD---NGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred HHHHHHHHHc---CCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 7777777665 44333 33355666666666531 1223334444455555
Q ss_pred hhcCCcchHHHHhcCchHHHHHh-hCCCChHHHHHHHHHHHHHHcCCc
Q 021251 135 LNENASDCSVVDKLGFPRLMLHL-ASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 135 l~~~~~~~~~l~~~g~v~~Lv~L-L~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+.-+...-+.-.=.++|..++.+ .++.+.+..+.++..+-.+++.+.
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~ 209 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD 209 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc
Confidence 54433221111122566776666 344556666888888888887653
No 348
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.68 E-value=6.6e+02 Score=27.54 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=42.3
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
++|.+-..-+.-.||.++-.+..-++..-.- ++..| ++|-+.+...+|-+|+..|.-++..++.
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~L-q~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVL-QLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHH-HHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 5667777888888888888777665542111 44433 3333446778888888888877666654
No 349
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=3.1e+02 Score=30.60 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHH---hhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchh-
Q 021251 109 YAALRDALGSESVKFQRKALNLIQYL---LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS- 184 (315)
Q Consensus 109 l~~L~~lL~s~~~kl~~kA~~lLs~L---l~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~- 184 (315)
+.--.++|++++..+|.+|+-++++- +...+..---++. -+=+.+++.+..+++-+...|+.+|.++...+..|+
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 33456678889999999999998863 3332221111121 345678888899999999999999999998888886
Q ss_pred -hhhhhhhHHHHHHHHHHHH
Q 021251 185 -AIKLAEDNEKLKQLLGERI 203 (315)
Q Consensus 185 -~~c~~~~~~~L~~~L~~~~ 203 (315)
+-| ++-.+.|+.++....
T Consensus 884 sR~l-~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 884 SRFL-EDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 445 554556555554444
No 350
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=27.30 E-value=5.8e+02 Score=24.75 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=99.0
Q ss_pred HHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHc-CcHHHHHHh-hc---CC--CHHHHHHHH
Q 021251 56 SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDA-LG---SE--SVKFQRKAL 128 (315)
Q Consensus 56 ~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGl~~L~~l-L~---s~--~~kl~~kA~ 128 (315)
|-+++++.+++..|.++-..+.++.+|..++..++.++..-.. .|+.+ .-...+.++ +. .. ...+...-+
T Consensus 1 ClEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~---plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV 77 (353)
T PF10257_consen 1 CLEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ---PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELV 77 (353)
T ss_pred ChHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc---ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHH
Confidence 3467889999999999977788899999999999999876433 23322 333445555 32 22 455666666
Q ss_pred HHHHHHhh---cCCcchHHHH--------------------------hcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 129 NLIQYLLN---ENASDCSVVD--------------------------KLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 129 ~lLs~Ll~---~~~~~~~~l~--------------------------~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
.++..|+. .+|..-..+. +..+...|+.+++++ -.+-+.|-.+|.-++.-
T Consensus 78 ~lL~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l 156 (353)
T PF10257_consen 78 ELLNTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSL 156 (353)
T ss_pred HHHHHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhC
Confidence 66666653 2333222221 224567888888886 55556666555555443
Q ss_pred C--cchhhhhhhhhHHHHHHHHHHHHh--------h--cc--------CCChh------hHHHHHHHHHHHHHHHHHHhC
Q 021251 180 K--ADGSAIKLAEDNEKLKQLLGERIK--------G--IS--------LMSPE------DLGAAREERHLVDSLWNACYN 233 (315)
Q Consensus 180 ~--~~~~~~c~~~~~~~L~~~L~~~~~--------~--i~--------~~~~e------d~~~~~eE~~~~~~L~~~~f~ 233 (315)
. ......+.- -...|-..+..++. + +. ..+.+ .+..+..-++||+.+.+.|-.
T Consensus 157 ~~~~~~~~~~i~-~~S~fc~~latgL~alYs~LP~~l~i~~~~~~~~~~~~~~d~~~~~~L~~Fl~~L~Fc~~v~~~a~~ 235 (353)
T PF10257_consen 157 ASEDPALAQYIV-EHSDFCPVLATGLGALYSQLPRKLDIESDSWYIDHPLSPEDSSSFPQLDSFLSWLEFCQDVIRVAHS 235 (353)
T ss_pred CCCCcHHHHHHH-HcchhHHHHHHHHHHHHHhcCcccCcccCcccccCCCCHhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 111100000 00112222222221 1 11 01123 356888899999999998865
No 351
>PHA01365 hypothetical protein
Probab=27.27 E-value=82 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccceeecCCCCCC
Q 021251 217 AREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAP 252 (315)
Q Consensus 217 ~~eE~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~~ 252 (315)
+||++ .+|++.||...+. +-++++|.+..|
T Consensus 4 ~~e~i---krilqK~fkdski---eki~~lps~~dv 33 (91)
T PHA01365 4 YKNGI---KKLLQKCFKDSSI---DVIFMSCNNLSP 33 (91)
T ss_pred hHHHH---HHHHHHHhCCCce---EEEEEecCCCCc
Confidence 45555 7899999998554 678999998654
No 352
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.83 E-value=2.1e+02 Score=23.11 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCCcc
Q 021251 79 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL---GSESVKFQRKALNLIQYLLNENASD 141 (315)
Q Consensus 79 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL---~s~~~kl~~kA~~lLs~Ll~~~~~~ 141 (315)
-..-.+.+..|+.++.+.... .. -+.+|..-| .....+...||+.+|.+|+.+++..
T Consensus 17 ~gp~~~~l~eIa~~t~~~~~~-~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~ 76 (125)
T PF01417_consen 17 WGPPGKLLAEIAQLTYNSKDC-QE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER 76 (125)
T ss_dssp SS--HHHHHHHHHHTTSCHHH-HH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH
T ss_pred CCcCHHHHHHHHHHHhccccH-HH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH
Confidence 355677888999988776332 22 345677777 5567999999999999999877653
No 353
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.01 E-value=3.1e+02 Score=30.17 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=51.4
Q ss_pred hHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhC-----CHH-HHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHH
Q 021251 16 NDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQN-----NPR-SQQLVMEANGLEPLLSNFAS-DPDVTVRTKALG 87 (315)
Q Consensus 16 ~d~~~~Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqN-----Np~-~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~ 87 (315)
+++.....++.++.+|.. .+++++..|...|..+++. -|. .+.++.....+..|+..+-. .....+-+..+.
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~ 263 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGII 263 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHH
Confidence 344456678888888754 5689999999999999987 333 56777777888888776443 334444444444
Q ss_pred Hhhh
Q 021251 88 AISS 91 (315)
Q Consensus 88 ALS~ 91 (315)
.+-.
T Consensus 264 vlI~ 267 (838)
T KOG2073|consen 264 VLIS 267 (838)
T ss_pred HHHH
Confidence 4433
No 354
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=25.53 E-value=1.9e+02 Score=19.61 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=22.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ 58 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~ 58 (315)
.++++|.+.++..|.+-.-+|+++.+=.|.=++
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 467889888888999999999999987765444
No 355
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=25.43 E-value=6.7e+02 Score=24.84 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC
Q 021251 39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 118 (315)
Q Consensus 39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s 118 (315)
..+=..++...+..+|..-..+++ .|++.--. ++..=.+-.+.-|..++...++..-.-+..--+..+..+++|
T Consensus 235 ~~~L~~~~~~f~~kdp~l~~~~i~-----~llk~WP~-t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S 308 (409)
T PF01603_consen 235 HQQLSYCVVQFLEKDPSLAEPVIK-----GLLKHWPK-TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISS 308 (409)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHH-----HHHHHS-S-S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCchhHHHHHH-----HHHHhCCC-CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 344455555666666655444433 23443222 355556777888888887665543222234567889999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhC-----CCChHHHHHHHHHHHHHHcCCcchhhhh
Q 021251 119 ESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLAS-----SEDPDVREAALRGLLELAREKADGSAIK 187 (315)
Q Consensus 119 ~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~--g~v~~Lv~LL~-----s~d~~v~e~aL~aL~~L~~~~~~~~~~c 187 (315)
++.++-.+|+.++. ++.....+.+. .+++.+..-|. +.+..+|..|.+++..+..-++.....|
T Consensus 309 ~h~qVAErAl~~w~-----n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 309 PHFQVAERALYFWN-----NEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp SSHHHHHHHHGGGG-----SHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred CCHHHHHHHHHHHC-----CHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999987553 22222222222 24455554432 3678999999999999998887665555
No 356
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=25.15 E-value=1.1e+03 Score=28.14 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=88.0
Q ss_pred HHHHHHHhhCCHHHHHHHHhc----CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH--HHHHcCc--------
Q 021251 43 GEVVTTIVQNNPRSQQLVMEA----NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE--AFRLANG-------- 108 (315)
Q Consensus 43 a~~LgtiaqNNp~~Q~~vle~----G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~--~f~~~gG-------- 108 (315)
..+|+.+-++.|+.-..|... +-+..+++.-....+....+..+..|++|+.+...+.. .|+..++
T Consensus 453 l~~ia~~Y~~rPe~~~~FW~d~e~~s~l~gFl~wa~~~~~~~l~~af~~ML~sLs~g~~~A~~a~~~L~~~~~~~~~~~~ 532 (1691)
T PF11894_consen 453 LLLIAYLYDGRPELALEFWSDPEVTSNLYGFLRWASDRNPSPLVSAFLEMLASLSSGPECASAAFNFLKDNSGKGRRSSS 532 (1691)
T ss_pred HHHHHHHHcCChHHHHHhCCCcccchhHhHHHHHHhhcCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcccCCCCCCc
Confidence 346788888888766555432 33556777644333444557777889999987655443 3344444
Q ss_pred --HHHHHHhhcC-------------------------------CCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchH
Q 021251 109 --YAALRDALGS-------------------------------ESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPR 152 (315)
Q Consensus 109 --l~~L~~lL~s-------------------------------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~---g~v~ 152 (315)
|..+...|+. ++..+...-+.+++.++..++..+..+.+. ..++
T Consensus 533 ~SW~~if~~L~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~el~~ee~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~ 612 (1691)
T PF11894_consen 533 VSWDQIFQSLQYYIDKLRQQQQQQQSQSIQRSRSPPPEIELSPEEVEMLSAYLRLISSVVRNSEQARSALLENPNWNPID 612 (1691)
T ss_pred ccHHHHHHHHHHHHHHhccccCCCCccccccCCCCCcccCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHH
Confidence 4445444432 123444666777888888766677777654 3688
Q ss_pred HHHHhhCCC-ChHHHHHHHHHHHHHH
Q 021251 153 LMLHLASSE-DPDVREAALRGLLELA 177 (315)
Q Consensus 153 ~Lv~LL~s~-d~~v~e~aL~aL~~L~ 177 (315)
.|..++..+ ...++...+.+|..++
T Consensus 613 ~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 613 ILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999883 4568899999999997
No 357
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.55 E-value=1.9e+02 Score=29.76 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=37.4
Q ss_pred hHHHHHhhc-C--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHHHh
Q 021251 24 LAPLLGYLK-N--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAI 89 (315)
Q Consensus 24 l~~Ll~lL~-s--~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~AL 89 (315)
++.+..++. . ....+|..|.|++..++...|.. +-+.|+.++.+ +.+.++|..|+.+|
T Consensus 479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 344555665 2 35679999999999887654432 22345555443 45778998887765
No 358
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=24.38 E-value=2.4e+02 Score=23.83 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=26.7
Q ss_pred HHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 144 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 144 ~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
......+-..+..+|.++|.++|..|+.+|...-
T Consensus 12 l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 12 LYRSDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3334455667889999999999999999998743
No 359
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=24.30 E-value=5e+02 Score=22.97 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH--HhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh-cCCchhHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV--MEANGLEPLLSNFASDPDVTVRTKALGAISSLI-RHNKPGIE 101 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~v--le~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li-R~~~~~~~ 101 (315)
|.|+.||...+ ++....++++.++.. +...+ ...|+.+-|...+.+.. .+--+||++-..+|. .-+.....
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~-~~e~~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLS-ENEPVKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhh-ccchHHHHHHHHhCCchhhhhHHH
Confidence 45568886533 223344445544432 11223 35577888888776642 344489999999987 43344444
Q ss_pred HHHHcCcHHHHHHhhcCC
Q 021251 102 AFRLANGYAALRDALGSE 119 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~ 119 (315)
.|.+ +-++.+...|.++
T Consensus 80 ~~~~-~L~~~~~~~L~~p 96 (174)
T PF04510_consen 80 PFME-NLLPEISKVLLPP 96 (174)
T ss_pred HHHH-HHHHHHHHHcCCc
Confidence 4444 3556666666554
No 360
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.68 E-value=4.7e+02 Score=22.41 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=50.8
Q ss_pred hcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 62 EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 62 e~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
..|.+...+..+..-.|..|-+..+.++....+...-....+ ..-+|.+..+|+|+.......++..+..++..
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c--~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC--VDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 334444444444333567888888888886555443223333 24679999999999999999999999988864
No 361
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.66 E-value=1.5e+02 Score=28.05 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=40.3
Q ss_pred CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--------------hHHHHHHcCcHHHHHHhhcC
Q 021251 64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--------------GIEAFRLANGYAALRDALGS 118 (315)
Q Consensus 64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--------------~~~~f~~~gGl~~L~~lL~s 118 (315)
..+..++.-|.+ .+...|.+|+.+|..++.|.-. +...+.+.||++.|..+|..
T Consensus 60 ~~i~~ll~~L~~-~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLES-SDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccc-cchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456678888876 4778899999999998877532 12344578999999999853
No 362
>PHA02447 hypothetical protein
Probab=23.46 E-value=37 Score=25.25 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=18.8
Q ss_pred HHhCCCCcccccceeecCCCCC----CCccccccc
Q 021251 230 ACYNEPSSLRDKGLLVLPGEDA----PPPDVASKH 260 (315)
Q Consensus 230 ~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 260 (315)
+-|--|---| -|||||.. -|.||||.+
T Consensus 14 tgfvgpgrwr----avlpgdrrnawinpsdvagdf 44 (86)
T PHA02447 14 TGFVGPGRWR----AVLPGDRRNAWINPSDVAGDF 44 (86)
T ss_pred hcccCCCcee----eecCCcccccccChhhcccce
Confidence 4444444443 58999975 789999986
No 363
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.32 E-value=4.2e+02 Score=25.30 Aligned_cols=177 Identities=12% Similarity=0.151 Sum_probs=100.8
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHH-hhc----C----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHc
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLK----N----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 72 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~-lL~----s----~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~L 72 (315)
|.-++-+++..++... +...-+++++. .|. + -+++|-.-.+.++..+-+.....-..+++. .+..-+.+
T Consensus 48 L~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf~~Tl~M 125 (319)
T PF08767_consen 48 LKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VFECTLPM 125 (319)
T ss_dssp HHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHH
Confidence 3445556666665544 33346777775 332 2 256666666666666655322222334433 56777788
Q ss_pred ccCC--CCHHHHHHHHHHhhhhhcCCchhHHHHH---HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC----cchH
Q 021251 73 FASD--PDVTVRTKALGAISSLIRHNKPGIEAFR---LANGYAALRDALGSESVKFQRKALNLIQYLLNENA----SDCS 143 (315)
Q Consensus 73 L~sd--~~~~vr~kAl~ALS~LiR~~~~~~~~f~---~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~----~~~~ 143 (315)
+..+ .-++.|..-..-|+++++++....-.+- -.--+..++..+++.+..+-..++.++..|+..-. ....
T Consensus 126 I~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~ 205 (319)
T PF08767_consen 126 INKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFAN 205 (319)
T ss_dssp HSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHH
T ss_pred HHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7765 3579999988899999988654322110 01245667778899999999999999999986422 2233
Q ss_pred HHHhcCc---hHHHHHhhCC-CC---hHHHHHHHHHHHHHHcCC
Q 021251 144 VVDKLGF---PRLMLHLASS-ED---PDVREAALRGLLELAREK 180 (315)
Q Consensus 144 ~l~~~g~---v~~Lv~LL~s-~d---~~v~e~aL~aL~~L~~~~ 180 (315)
.+.+.-+ +..+...+.. .| -..+-..+..|..++..+
T Consensus 206 ~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~ 249 (319)
T PF08767_consen 206 QFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESG 249 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcc
Confidence 4444433 3333333322 33 234445556666665543
No 364
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.53 E-value=9.9e+02 Score=25.77 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=78.7
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh----cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251 30 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME----ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL 105 (315)
Q Consensus 30 lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle----~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 105 (315)
.|.+-..+++--|..+|.-++.+.+.. ..+.. ...+..++..+. .++..+.-++..|+|+..| +...+.|..
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~-s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~-~~g~~~~~s 627 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSN-SLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSN-PAGRELFMS 627 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchh-hhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccC-HHHHHHHHH
Confidence 334446777888999998888875543 33332 235667777765 3567788899999998877 666666654
Q ss_pred cCcHHHHHHhh----cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-----CChHHHHHHHHHHHHH
Q 021251 106 ANGYAALRDAL----GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-----EDPDVREAALRGLLEL 176 (315)
Q Consensus 106 ~gGl~~L~~lL----~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-----~d~~v~e~aL~aL~~L 176 (315)
. +..+...+ ..++..+++..+.+.-++.-.- .+.-.+.+..+.+...+.. +|.+..-+.+.||++|
T Consensus 628 ~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 628 R--LESILDPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred H--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 3 33332222 2234455554444433322100 0001124555555554443 3333334556677777
Q ss_pred HcCCc
Q 021251 177 AREKA 181 (315)
Q Consensus 177 ~~~~~ 181 (315)
+...+
T Consensus 703 ~t~~~ 707 (745)
T KOG0301|consen 703 MTVDA 707 (745)
T ss_pred ccccH
Confidence 77764
No 365
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.39 E-value=93 Score=20.59 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=20.2
Q ss_pred hcCchHHHHHhhCCCChHHHHHHHHHH
Q 021251 147 KLGFPRLMLHLASSEDPDVREAALRGL 173 (315)
Q Consensus 147 ~~g~v~~Lv~LL~s~d~~v~e~aL~aL 173 (315)
...+...+..-+..+++.+|+.|+.+|
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 335666777778888899999988653
No 366
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=22.22 E-value=2.9e+02 Score=21.94 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhc
Q 021251 76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s--~~~kl~~kA~~lLs~Ll~~ 137 (315)
..+...|++++.+|..+++-....... ..+-++-+|++ ..+.++..|+.+...++..
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 467899999999999999854444333 34445555554 3457888888888887764
No 367
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=21.68 E-value=6e+02 Score=22.95 Aligned_cols=140 Identities=17% Similarity=0.074 Sum_probs=84.9
Q ss_pred hHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 24 LAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 24 l~~Ll~-lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
++.++. +-+..++++.......|..++.++-.+... .+..|..+... .....+.-++..+..+...++..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence 345553 446689999999999999888765112222 23445555443 334444455566666665555433
Q ss_pred HHHcCcHHHHHHh-----h---cCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh-CCCChHHHHHHHH
Q 021251 103 FRLANGYAALRDA-----L---GSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA-SSEDPDVREAALR 171 (315)
Q Consensus 103 f~~~gGl~~L~~l-----L---~s~--~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL-~s~d~~v~e~aL~ 171 (315)
+.+..++.. . .+. .-....-.+..+..++...|+ .-..+++.+..++ +..+..++.-++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 112211111 1 111 244445556778888887666 2334788899999 7888889999999
Q ss_pred HHHHHHcCC
Q 021251 172 GLLELAREK 180 (315)
Q Consensus 172 aL~~L~~~~ 180 (315)
+|..++...
T Consensus 145 ~l~~Lc~~~ 153 (234)
T PF12530_consen 145 ALAPLCEAE 153 (234)
T ss_pred HHHHHHHHh
Confidence 999998544
No 368
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=21.48 E-value=2.4e+02 Score=19.21 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=26.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV 60 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~v 60 (315)
+++++|.+.+.. |.+-.-+|+++.+=.|.-++.+
T Consensus 10 Vll~fl~~~e~~-r~~ll~vi~tlL~fs~~e~~~~ 43 (46)
T smart00755 10 VLLQFLTLRESE-RETLLKVISTVLQLSPEEMQKL 43 (46)
T ss_pred HHHHHhccCcch-HHHHHHHHHHHhCCCHHHHHHH
Confidence 467888887766 8999999999998776644443
No 369
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=1.9e+02 Score=32.99 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=58.0
Q ss_pred HcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 105 LANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 105 ~~gGl~~L~~l-L~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
+.++++.|.++ |++.+..++...+.-+..+...++++..+..+.--++.++.-+......+|.+.+..|..-+
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAV 537 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAV 537 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHH
Confidence 34456677766 56788888888888888888888888888888888899998888888888888887775543
No 370
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.76 E-value=57 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhh
Q 021251 38 IRAKAGEVVTTIVQ 51 (315)
Q Consensus 38 vR~~Aa~~Lgtiaq 51 (315)
||..|+++||.+-.
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68999999998864
No 371
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.75 E-value=1.1e+03 Score=25.82 Aligned_cols=99 Identities=24% Similarity=0.266 Sum_probs=60.4
Q ss_pred CchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHH
Q 021251 149 GFPRLMLHLASS-EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSL 227 (315)
Q Consensus 149 g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L 227 (315)
..|+--+..|.. ....+-|...+...-|-..+...+...+++-..+ +.++++|++.|. ++|
T Consensus 822 ~~ipey~~rL~~L~~D~Lpef~arF~~llN~~S~~~v~q~~~~L~~e-r~~IeERIe~IN-----------------~SL 883 (1104)
T COG4913 822 DDIPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLLSHLDHE-RALIEERIEAIN-----------------DSL 883 (1104)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHHHHHHHHHHH-----------------HHH
Confidence 455555555554 3444555555555555444444443332333333 666677666655 588
Q ss_pred HHHHhCCCCcccccceeecCCCCCCCccccccccCChhhhhccC
Q 021251 228 WNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAAN 271 (315)
Q Consensus 228 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (315)
-.+-|++.--| -+---++|-||---+.|.--|||.+..
T Consensus 884 ~~vdfn~gRyl------hIdi~kQp~p~~~~R~fqq~lra~tsg 921 (1104)
T COG4913 884 RRVDFNSGRYL------HIDIAKQPVPHDSMRTFQQALRALTSG 921 (1104)
T ss_pred hhccccCCceE------EeecccCCCccHHHHHHHHHHHHhhcC
Confidence 88899985444 233345788988889999999998743
No 372
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=20.43 E-value=3.5e+02 Score=20.28 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHH
Q 021251 162 DPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWN 229 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~ 229 (315)
++-+.=.+|+++..++...+..+.. .-..|-..++--+ .+.++.-..++|+++|.+.+.
T Consensus 10 nPHFl~NtLn~I~~l~~~~~~~~~~----~i~~ls~~lRy~l-----~~~~~~v~l~~El~~i~~Yl~ 68 (82)
T PF06580_consen 10 NPHFLFNTLNSISWLARIDPEKASE----MILSLSDLLRYSL-----SSKEEFVTLEEELEFIENYLE 68 (82)
T ss_pred ChHHHHHHHHHHHHHHHcCHHHHHH----HHHHHHHHHHHHh-----CCCCCeeeHHHHHHHHHHHHH
Confidence 4556667888888888877544422 2344445555544 234566789999999976554
Done!