Query 021251
Match_columns 315
No_of_seqs 238 out of 1213
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 3.8E-41 1.3E-45 316.8 20.4 229 2-236 61-290 (296)
2 4db6_A Armadillo repeat protei 99.9 2E-22 6.9E-27 175.5 19.5 176 3-179 34-210 (210)
3 4hxt_A De novo protein OR329; 99.9 1.3E-20 4.6E-25 166.6 22.7 221 3-236 24-245 (252)
4 3nmw_A APC variant protein; AR 99.9 1.2E-21 4.3E-26 188.0 16.6 232 5-249 108-350 (354)
5 4db6_A Armadillo repeat protei 99.9 1E-20 3.5E-25 164.6 19.6 165 18-183 8-172 (210)
6 4db8_A Armadillo-repeat protei 99.9 1.9E-20 6.4E-25 167.1 18.7 171 11-182 43-213 (252)
7 4hxt_A De novo protein OR329; 99.9 2.7E-20 9.3E-25 164.6 18.7 179 4-183 67-246 (252)
8 4db8_A Armadillo-repeat protei 99.9 1.4E-20 4.8E-25 167.9 17.0 174 4-178 77-251 (252)
9 3tpo_A Importin subunit alpha- 99.8 2.3E-20 7.9E-25 186.3 16.9 220 5-237 144-369 (529)
10 3ul1_B Importin subunit alpha- 99.8 2.5E-20 8.5E-25 185.6 13.7 178 5-182 125-307 (510)
11 3nmz_A APC variant protein; pr 99.8 8E-20 2.7E-24 181.1 16.9 224 4-239 223-457 (458)
12 3tpo_A Importin subunit alpha- 99.8 1.1E-18 3.8E-23 174.1 20.6 220 5-234 275-498 (529)
13 4b8j_A Importin subunit alpha- 99.8 9.2E-19 3.1E-23 173.2 19.7 220 4-236 141-362 (528)
14 3nmw_A APC variant protein; AR 99.8 8.1E-19 2.8E-23 168.4 17.6 180 5-184 151-340 (354)
15 3ul1_B Importin subunit alpha- 99.8 1.4E-18 4.8E-23 173.0 19.2 217 5-234 256-479 (510)
16 3nmz_A APC variant protein; pr 99.8 1.6E-18 5.6E-23 171.7 16.8 180 5-184 267-456 (458)
17 4b8j_A Importin subunit alpha- 99.8 3.9E-18 1.3E-22 168.6 19.1 179 4-182 267-447 (528)
18 1xm9_A Plakophilin 1; armadill 99.8 2E-18 6.8E-23 169.9 16.0 172 3-177 24-219 (457)
19 2jdq_A Importin alpha-1 subuni 99.8 6.2E-18 2.1E-22 162.0 17.4 169 13-182 98-267 (450)
20 1wa5_B Importin alpha subunit; 99.8 7.1E-18 2.4E-22 167.3 18.4 220 5-237 155-375 (530)
21 2jdq_A Importin alpha-1 subuni 99.8 3.1E-17 1E-21 157.1 21.1 177 4-181 215-393 (450)
22 3tt9_A Plakophilin-2; cell adh 99.8 4.3E-17 1.5E-21 148.1 19.4 199 23-233 9-230 (233)
23 3tt9_A Plakophilin-2; cell adh 99.8 6.1E-18 2.1E-22 153.7 13.4 174 4-179 33-230 (233)
24 3l6x_A Catenin delta-1; cateni 99.7 1.2E-16 4E-21 162.6 22.7 202 20-233 46-271 (584)
25 1wa5_B Importin alpha subunit; 99.7 1.6E-16 5.5E-21 157.5 21.8 178 4-182 110-290 (530)
26 1xm9_A Plakophilin 1; armadill 99.7 5.2E-17 1.8E-21 159.8 17.9 175 23-202 3-197 (457)
27 3now_A UNC-45 protein, SD10334 99.7 1.8E-17 6E-22 174.0 14.0 163 16-181 489-655 (810)
28 3l6x_A Catenin delta-1; cateni 99.7 1.2E-16 4.2E-21 162.4 16.0 174 4-179 71-271 (584)
29 1xqr_A HSPBP1 protein; armadil 99.7 4.2E-16 1.4E-20 146.1 16.4 157 24-182 30-200 (296)
30 3now_A UNC-45 protein, SD10334 99.7 2.1E-16 7.3E-21 165.8 15.9 174 5-180 605-784 (810)
31 1jdh_A Beta-catenin; beta-cate 99.7 1.1E-15 3.9E-20 149.4 17.3 178 3-182 82-260 (529)
32 2z6h_A Catenin beta-1, beta-ca 99.6 8.4E-15 2.9E-19 149.1 18.4 177 4-182 80-257 (644)
33 1jdh_A Beta-catenin; beta-cate 99.6 1.4E-14 4.7E-19 141.7 16.6 162 18-181 13-175 (529)
34 2z6h_A Catenin beta-1, beta-ca 99.6 4.1E-14 1.4E-18 144.0 16.9 176 3-180 36-214 (644)
35 2z6g_A B-catenin; FULL-length, 99.6 8.2E-14 2.8E-18 145.7 18.9 177 4-182 216-393 (780)
36 2z6g_A B-catenin; FULL-length, 99.5 2.9E-13 9.9E-18 141.6 14.1 162 18-181 146-308 (780)
37 3opb_A SWI5-dependent HO expre 99.3 6.4E-12 2.2E-16 130.7 12.2 166 14-181 449-638 (778)
38 3opb_A SWI5-dependent HO expre 99.3 5.4E-11 1.8E-15 123.7 15.8 178 3-183 479-688 (778)
39 3grl_A General vesicular trans 99.2 6.9E-11 2.4E-15 120.5 12.7 160 20-180 120-294 (651)
40 4gmo_A Putative uncharacterize 99.2 6.8E-11 2.3E-15 122.0 12.3 164 20-184 32-220 (684)
41 3grl_A General vesicular trans 99.0 9.7E-10 3.3E-14 112.1 12.0 167 15-181 158-345 (651)
42 3ltj_A Alpharep-4; protein eng 98.9 7.8E-08 2.7E-12 82.6 16.1 119 24-176 47-165 (201)
43 3ltm_A Alpha-REP4; protein eng 98.8 1.9E-07 6.6E-12 80.7 17.4 121 22-176 19-139 (211)
44 3ltj_A Alpharep-4; protein eng 98.8 1.9E-07 6.4E-12 80.2 16.7 123 22-178 14-136 (201)
45 3ltm_A Alpha-REP4; protein eng 98.8 1.4E-07 4.8E-12 81.6 14.5 122 22-177 50-171 (211)
46 1oyz_A Hypothetical protein YI 98.7 1.9E-07 6.6E-12 84.2 14.8 87 76-178 102-188 (280)
47 1oyz_A Hypothetical protein YI 98.6 2E-06 6.8E-11 77.5 17.8 138 18-178 19-157 (280)
48 4gmo_A Putative uncharacterize 98.6 6.4E-08 2.2E-12 99.8 8.0 173 4-177 57-257 (684)
49 1te4_A Conserved protein MTH18 98.5 1.1E-08 3.6E-13 83.2 -0.7 120 21-175 11-130 (131)
50 2qk2_A LP04448P; mini spindles 98.4 1.1E-05 3.9E-10 71.5 16.2 146 24-181 58-208 (242)
51 2vgl_B AP-2 complex subunit be 98.4 2.2E-06 7.4E-11 86.5 11.9 152 25-182 124-315 (591)
52 2vgl_B AP-2 complex subunit be 98.3 1.1E-05 3.6E-10 81.4 16.0 143 23-181 50-192 (591)
53 4fdd_A Transportin-1; heat rep 98.3 1.3E-06 4.6E-11 91.0 8.8 141 37-183 336-476 (852)
54 4fdd_A Transportin-1; heat rep 98.3 1.4E-06 4.7E-11 90.9 8.3 152 23-178 360-512 (852)
55 1b3u_A Protein (protein phosph 98.2 1.3E-05 4.3E-10 78.6 13.6 144 24-177 443-586 (588)
56 2qk1_A Protein STU2; STU2P, XM 98.2 1.1E-05 3.8E-10 73.0 11.4 154 24-180 62-222 (249)
57 1b3u_A Protein (protein phosph 98.2 1.3E-05 4.6E-10 78.4 12.6 148 24-181 166-313 (588)
58 2qk2_A LP04448P; mini spindles 98.2 3.6E-05 1.2E-09 68.2 14.1 161 6-180 4-164 (242)
59 1ibr_B P95, importin beta-1 su 98.1 1.4E-05 4.7E-10 75.9 11.2 154 24-179 130-289 (462)
60 2bpt_A Importin beta-1 subunit 98.1 0.00013 4.4E-09 74.9 19.3 153 25-183 372-534 (861)
61 1qgr_A Protein (importin beta 98.1 3.8E-05 1.3E-09 79.0 15.1 153 24-182 368-541 (876)
62 1w63_A Adapter-related protein 98.1 7.8E-06 2.7E-10 83.1 9.4 151 24-182 144-346 (618)
63 1te4_A Conserved protein MTH18 98.1 2.5E-06 8.6E-11 68.9 4.3 88 23-133 43-130 (131)
64 3qml_C Protein SLS1, nucleotid 98.0 6.2E-05 2.1E-09 70.3 13.6 224 2-243 49-311 (315)
65 3b2a_A TON_1937, putative unch 98.0 0.00014 4.7E-09 65.8 14.8 148 23-180 34-181 (265)
66 3dad_A FH1/FH2 domain-containi 98.0 0.0002 6.8E-09 67.8 15.6 163 4-168 141-326 (339)
67 1ibr_B P95, importin beta-1 su 97.9 4.1E-05 1.4E-09 72.6 9.6 156 22-182 259-441 (462)
68 2qk1_A Protein STU2; STU2P, XM 97.9 7.4E-05 2.5E-09 67.5 10.4 154 27-181 21-178 (249)
69 1u6g_C TIP120 protein, CAND1; 97.7 0.00016 5.4E-09 78.3 12.1 152 23-181 49-207 (1230)
70 1w63_A Adapter-related protein 97.7 0.00027 9.3E-09 71.6 13.0 141 23-181 71-211 (618)
71 2bpt_A Importin beta-1 subunit 97.7 0.00025 8.4E-09 72.8 12.2 154 23-181 412-588 (861)
72 2db0_A 253AA long hypothetical 97.7 0.007 2.4E-07 53.1 19.1 164 24-209 34-229 (253)
73 1qgr_A Protein (importin beta 97.7 0.00038 1.3E-08 71.5 13.2 152 24-179 130-289 (876)
74 2vgl_A Adaptor protein complex 97.6 0.0013 4.5E-08 66.9 15.8 145 22-182 74-220 (621)
75 3b2a_A TON_1937, putative unch 97.5 0.00078 2.7E-08 60.9 11.9 165 4-181 56-221 (265)
76 1u6g_C TIP120 protein, CAND1; 97.5 0.00066 2.3E-08 73.4 13.6 183 24-234 933-1133(1230)
77 3dad_A FH1/FH2 domain-containi 97.5 0.0068 2.3E-07 57.3 18.4 155 25-181 121-289 (339)
78 4ffb_C Protein STU2; tubulin f 97.5 0.0039 1.3E-07 56.4 16.0 171 2-180 30-214 (278)
79 2vgl_A Adaptor protein complex 97.5 0.00088 3E-08 68.1 12.7 71 24-98 148-220 (621)
80 3u0r_A Apoptosis inhibitor 5; 97.3 0.0081 2.8E-07 59.3 16.3 160 2-183 7-168 (507)
81 2of3_A ZYG-9; multifunctional 97.2 0.003 1E-07 58.0 12.3 159 33-205 98-263 (266)
82 4ady_A RPN2, 26S proteasome re 97.1 0.006 2.1E-07 65.0 14.4 102 66-183 579-681 (963)
83 3tjz_B Coatomer subunit gamma; 96.9 0.0027 9.3E-08 60.6 9.3 168 25-207 142-341 (355)
84 2db0_A 253AA long hypothetical 96.7 0.077 2.6E-06 46.6 15.7 137 24-177 109-245 (253)
85 3tjz_B Coatomer subunit gamma; 96.6 0.035 1.2E-06 52.9 13.9 138 24-180 70-207 (355)
86 3eg5_B Protein diaphanous homo 96.0 0.17 5.8E-06 48.4 15.4 152 12-166 100-282 (383)
87 2f31_A Diaphanous protein homo 95.8 0.18 6.1E-06 44.8 13.8 144 11-157 33-207 (233)
88 2x19_B Importin-13; nuclear tr 95.8 0.091 3.1E-06 55.0 13.5 140 32-181 459-602 (963)
89 4ady_A RPN2, 26S proteasome re 95.8 0.088 3E-06 56.1 13.2 104 65-177 612-718 (963)
90 4hat_C Exportin-1; heat repeat 95.7 0.061 2.1E-06 57.9 11.8 143 34-181 465-621 (1023)
91 2x1g_F Cadmus; transport prote 95.5 0.14 4.8E-06 53.8 13.9 139 34-181 476-618 (971)
92 1upk_A MO25 protein; transfera 95.5 1 3.6E-05 42.4 18.0 164 55-226 155-328 (341)
93 4ffb_C Protein STU2; tubulin f 95.3 0.95 3.3E-05 40.3 16.9 148 27-180 14-170 (278)
94 1wa5_C Importin alpha RE-expor 95.2 0.13 4.3E-06 54.4 12.0 63 28-95 461-526 (960)
95 1ho8_A Vacuolar ATP synthase s 95.0 0.15 5.1E-06 50.4 11.2 155 25-180 274-478 (480)
96 2f31_A Diaphanous protein homo 95.0 0.48 1.6E-05 41.9 13.6 122 58-181 38-183 (233)
97 3m1i_C Exportin-1; heat repeat 94.9 0.78 2.7E-05 48.9 17.4 143 34-181 465-621 (1049)
98 2bnx_A Diaphanous protein homo 94.7 0.49 1.7E-05 45.2 13.8 155 10-167 36-221 (386)
99 1ho8_A Vacuolar ATP synthase s 94.5 0.031 1.1E-06 55.2 4.9 74 64-137 395-477 (480)
100 1wa5_C Importin alpha RE-expor 94.4 0.51 1.8E-05 49.7 14.2 138 33-179 416-583 (960)
101 2x19_B Importin-13; nuclear tr 93.5 0.54 1.9E-05 49.1 12.4 135 38-182 423-560 (963)
102 3eg5_B Protein diaphanous homo 93.5 3.4 0.00012 39.3 16.9 122 58-181 104-249 (383)
103 1lrv_A LRV, leucine-rich repea 92.8 0.076 2.6E-06 47.8 3.9 87 25-130 101-193 (244)
104 1x5b_A Signal transducing adap 92.5 0.18 6E-06 42.7 5.6 70 23-92 53-123 (163)
105 3m1i_C Exportin-1; heat repeat 92.2 2.2 7.4E-05 45.4 14.8 138 37-181 428-572 (1049)
106 2x1g_F Cadmus; transport prote 92.1 0.5 1.7E-05 49.6 9.8 95 34-138 518-617 (971)
107 2bnx_A Diaphanous protein homo 92.0 5.8 0.0002 37.7 16.3 123 58-182 42-188 (386)
108 3l9t_A Putative uncharacterize 92.0 4.8 0.00016 36.1 14.5 150 15-185 60-214 (240)
109 3gs3_A Symplekin, LD45768P; he 92.0 6.8 0.00023 35.3 15.8 152 24-184 55-249 (257)
110 2fv2_A RCD1 required for cell 91.9 0.83 2.8E-05 41.6 9.5 141 38-179 69-225 (268)
111 1lrv_A LRV, leucine-rich repea 91.4 0.17 5.8E-06 45.5 4.5 87 25-130 77-169 (244)
112 1mhq_A ADP-ribosylation factor 91.0 0.41 1.4E-05 39.8 6.1 72 23-94 39-116 (148)
113 1x5b_A Signal transducing adap 90.9 0.72 2.5E-05 38.8 7.6 92 83-179 33-126 (163)
114 2iw3_A Elongation factor 3A; a 90.7 1.1 3.6E-05 48.2 10.4 110 21-136 94-204 (986)
115 3qml_C Protein SLS1, nucleotid 90.6 2.3 7.9E-05 39.6 11.3 145 25-177 25-188 (315)
116 2fv2_A RCD1 required for cell 90.6 1.6 5.5E-05 39.7 10.0 139 4-145 79-232 (268)
117 1juq_A ADP-ribosylation factor 90.5 0.32 1.1E-05 41.4 5.1 72 23-94 51-128 (171)
118 1juq_A ADP-ribosylation factor 90.4 0.51 1.7E-05 40.1 6.3 111 65-180 13-130 (171)
119 3ibv_A Exportin-T; karyopherin 90.3 12 0.00041 39.8 18.2 145 29-178 200-361 (980)
120 1mhq_A ADP-ribosylation factor 90.2 0.54 1.9E-05 39.0 6.2 93 83-180 19-118 (148)
121 3o2t_A Symplekin; heat repeat, 90.2 13 0.00045 35.4 17.2 153 23-184 64-262 (386)
122 3zyq_A Hepatocyte growth facto 89.5 0.36 1.2E-05 42.8 4.8 71 23-93 46-117 (226)
123 1elk_A Target of MYB1; superhe 88.8 0.59 2E-05 39.1 5.5 70 23-92 54-128 (157)
124 3ldz_A STAM-1, signal transduc 88.7 0.83 2.8E-05 37.4 6.2 92 83-179 23-115 (140)
125 3g2s_A C-terminal fragment of 88.5 0.77 2.6E-05 38.2 5.9 72 23-94 49-126 (149)
126 2iw3_A Elongation factor 3A; a 88.5 4.9 0.00017 43.1 13.4 140 24-177 177-323 (986)
127 3u0r_A Apoptosis inhibitor 5; 88.2 7.6 0.00026 38.4 13.5 187 23-235 66-255 (507)
128 1dvp_A HRS, hepatocyte growth 87.8 0.53 1.8E-05 41.3 4.7 71 23-93 43-114 (220)
129 3g2s_A C-terminal fragment of 87.8 2 6.7E-05 35.7 7.9 111 65-180 11-128 (149)
130 4hat_C Exportin-1; heat repeat 87.4 3.2 0.00011 44.5 11.3 112 67-181 454-572 (1023)
131 3zyq_A Hepatocyte growth facto 86.5 1.4 4.9E-05 38.9 6.8 110 66-180 9-120 (226)
132 2of3_A ZYG-9; multifunctional 86.4 10 0.00035 34.3 12.6 144 26-180 50-198 (266)
133 3ldz_A STAM-1, signal transduc 86.0 0.82 2.8E-05 37.4 4.6 70 23-93 43-113 (140)
134 1lsh_A Lipovitellin (LV-1N, LV 83.2 15 0.00052 39.4 14.2 122 32-182 450-580 (1056)
135 3c2g_A SYS-1 protein; beta-cat 83.2 4.5 0.00015 38.8 8.8 173 3-177 265-472 (619)
136 3ebb_A Phospholipase A2-activa 83.1 20 0.00067 32.9 13.2 152 24-180 105-265 (304)
137 3gjx_A Exportin-1; transport, 82.0 5.5 0.00019 43.0 10.2 115 66-183 479-600 (1073)
138 1dvp_A HRS, hepatocyte growth 80.7 1.9 6.5E-05 37.7 5.0 91 84-179 24-116 (220)
139 3ebb_A Phospholipase A2-activa 79.4 20 0.0007 32.8 11.8 123 34-160 160-287 (304)
140 1elk_A Target of MYB1; superhe 79.1 4.5 0.00015 33.6 6.6 92 83-179 34-131 (157)
141 3ibv_A Exportin-T; karyopherin 76.5 14 0.00049 39.3 11.1 75 21-95 39-120 (980)
142 1lsh_A Lipovitellin (LV-1N, LV 75.7 6.8 0.00023 42.1 8.5 156 27-210 396-578 (1056)
143 3oc3_A Helicase MOT1, MOT1; re 75.2 4.6 0.00016 41.1 6.4 29 149-177 375-403 (800)
144 3gjx_A Exportin-1; transport, 75.1 69 0.0024 34.5 16.0 143 34-182 491-648 (1073)
145 3oc3_A Helicase MOT1, MOT1; re 70.9 13 0.00045 37.8 8.5 163 24-209 176-349 (800)
146 3a6p_A Exportin-5; exportin-5, 70.6 28 0.00095 37.8 11.8 138 35-180 220-382 (1204)
147 3hjl_A Flagellar motor switch 63.7 93 0.0032 28.8 13.7 171 38-221 113-312 (329)
148 3a6p_A Exportin-5; exportin-5, 61.2 71 0.0024 34.6 12.7 130 34-179 25-163 (1204)
149 3o2t_A Symplekin; heat repeat, 59.2 1.2E+02 0.0042 28.7 13.1 108 64-177 63-182 (386)
150 3l9t_A Putative uncharacterize 58.9 65 0.0022 28.6 9.9 103 32-146 114-217 (240)
151 3rru_A TOM1L1 protein; structu 58.7 11 0.00037 31.2 4.5 75 23-97 54-133 (152)
152 1upk_A MO25 protein; transfera 57.7 1.2E+02 0.0042 28.3 15.6 131 6-137 148-284 (341)
153 3pkr_A FLIG, flagellar motor s 53.6 1.3E+02 0.0044 27.2 16.9 113 105-249 140-274 (279)
154 1vdy_A Hypothetical protein (R 51.9 30 0.001 28.2 6.1 92 85-180 31-132 (140)
155 2xpp_A IWS1, ECU08_0440; trans 49.5 41 0.0014 27.6 6.5 86 1-90 40-132 (145)
156 3rru_A TOM1L1 protein; structu 48.6 27 0.00092 28.7 5.4 94 83-181 34-133 (152)
157 2xpp_A IWS1, ECU08_0440; trans 46.0 1.2E+02 0.0041 24.7 10.1 82 89-175 44-133 (145)
158 1sz9_A PCF11 protein; RNA poly 43.4 68 0.0023 25.9 7.0 91 33-134 22-112 (144)
159 3nfq_A Transcription factor IW 40.5 1.6E+02 0.0056 24.6 10.2 77 97-177 66-150 (170)
160 3vld_A DNA mismatch repair pro 40.2 1.1E+02 0.0037 30.1 8.9 114 17-137 111-226 (500)
161 1vsy_5 Proteasome activator BL 39.6 28 0.00095 37.3 5.0 114 23-140 844-970 (997)
162 3c2g_A SYS-1 protein; beta-cat 38.9 2.4E+02 0.0081 27.1 10.7 96 86-183 263-359 (619)
163 3gs3_A Symplekin, LD45768P; he 38.8 2.1E+02 0.0071 25.4 10.1 107 65-177 54-172 (257)
164 3gae_A Protein DOA1; UFD3, CDC 38.5 43 0.0015 29.7 5.5 104 31-140 99-221 (253)
165 3pst_A Protein DOA1; protein d 38.1 1.3E+02 0.0044 29.0 9.0 128 2-139 247-392 (425)
166 3l3f_X Protein DOA1, DOA1/UFD3 36.8 1.2E+02 0.0042 28.4 8.5 132 39-181 180-329 (362)
167 3nfq_A Transcription factor IW 32.7 90 0.0031 26.2 6.2 89 1-93 55-150 (170)
168 4atg_A TAF6; transcription, TF 32.4 1.1E+02 0.0037 26.2 6.8 84 4-92 69-160 (196)
169 1n4k_A Inositol 1,4,5-trisphos 32.1 1.1E+02 0.0039 28.6 7.6 88 1-96 253-379 (381)
170 3pst_A Protein DOA1; protein d 30.9 1.6E+02 0.0055 28.3 8.4 132 39-180 243-391 (425)
171 3l3f_X Protein DOA1, DOA1/UFD3 30.1 1.4E+02 0.0049 28.0 7.8 105 31-139 208-329 (362)
172 1qbf_A Peptide YY, PYY; PP-fol 26.7 23 0.00077 22.4 1.0 19 246-266 7-25 (37)
173 1vdy_A Hypothetical protein (R 26.6 1.4E+02 0.0048 24.1 6.1 33 150-182 50-82 (140)
174 1bba_A Bovine pancreatic polyp 25.6 19 0.00064 22.6 0.5 13 246-258 7-19 (36)
175 3fga_B Serine/threonine-protei 24.3 1.9E+02 0.0063 27.6 7.5 91 2-98 272-370 (403)
176 1f8p_A Neuropeptide Y (PNPY); 24.1 24 0.00081 22.3 0.8 13 246-258 7-19 (37)
177 3s4w_B Protein FACD2, fanconi 22.0 2.7E+02 0.0091 30.8 8.9 105 114-236 407-511 (1323)
178 4flb_A Regulation of nuclear P 21.2 82 0.0028 24.5 3.7 62 24-96 10-71 (132)
179 1y8m_A FIS1; mitochondria, unk 20.9 3E+02 0.01 22.3 7.1 61 154-230 46-106 (144)
180 1vsy_5 Proteasome activator BL 20.1 1E+02 0.0035 32.9 5.2 108 24-136 135-245 (997)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=3.8e-41 Score=316.79 Aligned_cols=229 Identities=28% Similarity=0.393 Sum_probs=213.1
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~-lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~ 80 (315)
|+.|.++++++|||++|++.||+++|+. +|+++++.||+.|+|+||++++|||.+|+.|++.|++++|+.+|.++++..
T Consensus 61 l~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~ 140 (296)
T 1xqr_A 61 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT 140 (296)
T ss_dssp HHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHH
Confidence 6889999999999999999999999999 999999999999999999999999999999999999999999999766899
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
++++|+|||||++|++++..+.|++.||++.|+.+|++++.+++.+|+|+|++|+.++++.+..+++.|+++.|+.+|.+
T Consensus 141 v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT 220 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251 161 EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236 (315)
Q Consensus 161 ~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~ 236 (315)
++..++++|+++|.+|+++.++....| +.....|..+|+++++.++. +++++||+++|.+|+..||++++
T Consensus 221 ~d~~v~~~al~aL~~l~~~~~~~~~~~-~~~~~~l~~lL~~~~~~lq~-----~e~~~e~~~~~~~il~~~f~~~~ 290 (296)
T 1xqr_A 221 EHSPFHEHVLGALCSLVTDFPQGVREC-REPELGLEELLRHRCQLLQQ-----HEEYQEELEFCEKLLQTCFSSPA 290 (296)
T ss_dssp CCSTHHHHHHHHHHHHHTTCHHHHHHH-HCGGGCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCC---
T ss_pred CChhHHHHHHHHHHHHHhCChhHHHHH-hccHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999977666777 55556789999999999884 35689999999999999999865
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2e-22 Score=175.46 Aligned_cols=176 Identities=20% Similarity=0.245 Sum_probs=162.6
Q ss_pred HHHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 3 DELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 3 e~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
..|..++ .+.++...+.+.|+++.|+.+|+++++.+|..|+|+|++++.+++..++.+++.|+++.|+.+|.+ .+..+
T Consensus 34 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v 112 (210)
T 4db6_A 34 RKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQI 112 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC-SCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC-CcHHH
Confidence 3466677 455677889999999999999999999999999999999999999999999999999999999986 48999
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
+..|+|+|++++.+++.....+++.|+++.|+.+|++++.+++..|+++|.+|+..++..+..+.+.|+++.|+.++.++
T Consensus 113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 192 (210)
T 4db6_A 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC
Confidence 99999999999999888888888999999999999999999999999999999988788888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcC
Q 021251 162 DPDVREAALRGLLELARE 179 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~ 179 (315)
+..+++.|+.+|.+|+++
T Consensus 193 ~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 193 NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp CHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 999999999999998753
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.87 E-value=1.3e-20 Score=166.60 Aligned_cols=221 Identities=18% Similarity=0.231 Sum_probs=182.0
Q ss_pred HHHHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 3 DELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 3 e~L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
..|..++..- ++...+.+.|+++.|+.+|++++..+|..|+++|++++.+++..+..+++.|+++.|+.++.+ .+..+
T Consensus 24 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v 102 (252)
T 4hxt_A 24 RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEV 102 (252)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHH
T ss_pred HHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHH
Confidence 3456666655 488889999999999999999999999999999999999999999999999999999999986 58999
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
+..|+++|++++.+++.....+.+.|+++.|+.+|.+++..++..|+++|.+|+...+..+..+.+.|+++.|+.++.++
T Consensus 103 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 182 (252)
T 4hxt_A 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 182 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC
Confidence 99999999999998888888999999999999999999999999999999999987777778899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251 162 DPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~ 236 (315)
+..+++.|+.+|.+++.+++...... . ..+....|-+ -++.- | ..+++ ..++.|.+.++..+.
T Consensus 183 ~~~v~~~a~~~L~~l~~~~~~~~~~l-~--~~~~i~~L~~---ll~~~---~-~~v~~--~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 183 DSEVQKEAARALANIASGPTSAIKAI-V--DAGGVEVLQK---LLTST---D-SEVQK--EAQRALENIKSGGWL 245 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSBHHHHHHH-H--HTTHHHHHHH---GGGCS---C-HHHHH--HHHHHHHHHHHTCBC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHH-H--HCCCHHHHHH---HHCCC---c-HHHHH--HHHHHHHHHHcCCCc
Confidence 99999999999999998654332111 0 1122222322 22321 1 12333 356888888877643
No 4
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.87 E-value=1.2e-21 Score=188.01 Aligned_cols=232 Identities=15% Similarity=0.143 Sum_probs=175.5
Q ss_pred HHHhhcCCC-ChhHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 5 LQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 5 L~dLveniD-nA~d~~~~Gg-l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
|..++.+-+ +...+...|| +|+|+.+|++++.++|..|+|+|++++.+ ++.++..+.+.|++++|+++|.+..+..+
T Consensus 108 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~ 187 (354)
T 3nmw_A 108 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 187 (354)
T ss_dssp HHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHH
Confidence 556665544 4455656666 99999999999999999999999999985 78899999999999999998654457899
Q ss_pred HHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchHHHHhcCchHH
Q 021251 82 RTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCSVVDKLGFPRL 153 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~----kl~~kA~~lLs~Ll~---~~~~~~~~l~~~g~v~~ 153 (315)
+..|++||.+|+.+++.....+. ..|+++.|+.+|.+.+. .++..|+++|++|+. .++..+..+.+.|+++.
T Consensus 188 ~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~ 267 (354)
T 3nmw_A 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267 (354)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHH
Confidence 99999999999987766667777 78999999999987654 699999999999996 57788899999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhC
Q 021251 154 MLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN 233 (315)
Q Consensus 154 Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~ 233 (315)
|+.+|++++..+++.|+.+|.+|+..++...... . +.+....| ++-++.. + ...+ ...++.|++.+.+
T Consensus 268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-~--~~G~i~~L---v~LL~s~---~-~~i~--~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-W--DMGAVSML---KNLIHSK---H-KMIA--MGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH-H--HTTHHHHH---HTTTTCS---S-HHHH--HHHHHHHHHHHTT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH-H--HCCCHHHH---HHHHhCC---C-HHHH--HHHHHHHHHHHcC
Confidence 9999999999999999999999997654332110 0 11111222 2222211 1 1233 3467999999999
Q ss_pred CCCcccccceeecCCC
Q 021251 234 EPSSLRDKGLLVLPGE 249 (315)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (315)
.|.+.++.+ +|-||-
T Consensus 336 ~~~~~~~~~-~~~~~~ 350 (354)
T 3nmw_A 336 RPAKYKDAN-IMSPGS 350 (354)
T ss_dssp CCGGGC----------
T ss_pred CHHHHhhhc-ccCCcC
Confidence 999988776 777774
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1e-20 Score=164.59 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=150.9
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+...|++++|+.+|++++..+|..|+|+|++++..++..+..+++.|+++.|+.+|.+ .+..++..|+++|++++.+++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence 3456789999999999999999999999999999999999999999999999999987 489999999999999999988
Q ss_pred hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
.....+++.|+++.|+.+|++++..++..|+++|.+|+..++..+..+.+.|+++.|+.++.+++..+++.|+.+|.+++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999877777788889999999999999999999999999999999
Q ss_pred cCCcch
Q 021251 178 REKADG 183 (315)
Q Consensus 178 ~~~~~~ 183 (315)
.+++..
T Consensus 167 ~~~~~~ 172 (210)
T 4db6_A 167 SGGNEQ 172 (210)
T ss_dssp TSCHHH
T ss_pred cCCcHH
Confidence 886543
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=1.9e-20 Score=167.10 Aligned_cols=171 Identities=21% Similarity=0.246 Sum_probs=158.2
Q ss_pred CCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251 11 SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS 90 (315)
Q Consensus 11 niDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS 90 (315)
+-++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+++.|+++.|+.+|.+ .+..++..|+|+|+
T Consensus 43 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~ 121 (252)
T 4db8_A 43 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALS 121 (252)
T ss_dssp HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 34456678899999999999999999999999999999999999999999999999999999987 58999999999999
Q ss_pred hhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHH
Q 021251 91 SLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAAL 170 (315)
Q Consensus 91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL 170 (315)
+++.+.+.....+.+.|+++.|+.+|++++..++..|+++|.+|+..++.....+.+.|+++.|+.++.+++..+++.|+
T Consensus 122 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 201 (252)
T 4db8_A 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 201 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred HhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
Confidence 99998777668889999999999999999999999999999999987777778889999999999999999999999999
Q ss_pred HHHHHHHcCCcc
Q 021251 171 RGLLELAREKAD 182 (315)
Q Consensus 171 ~aL~~L~~~~~~ 182 (315)
.+|.+|+..++.
T Consensus 202 ~~L~~l~~~~~~ 213 (252)
T 4db8_A 202 WALSNIASGGNE 213 (252)
T ss_dssp HHHHHHTTSCHH
T ss_pred HHHHHHhcCCHH
Confidence 999999976653
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.85 E-value=2.7e-20 Score=164.60 Aligned_cols=179 Identities=19% Similarity=0.263 Sum_probs=165.1
Q ss_pred HHHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++.+ .++...+.+.|+++.|+.+|++++..+|..|+++|++++..++..+..+++.|+++.|++++.+ .+..++
T Consensus 67 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~ 145 (252)
T 4hxt_A 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQ 145 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHH
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHH
Confidence 45666666 5677888899999999999999999999999999999999999999999999999999999986 578999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
..|+++|++++++++.....+.+.|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++.|+.++++++
T Consensus 146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 99999999999998887788889999999999999999999999999999999877777888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcch
Q 021251 163 PDVREAALRGLLELAREKADG 183 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~~ 183 (315)
..+++.|+.+|.+|+...+..
T Consensus 226 ~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999887643
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.85 E-value=1.4e-20 Score=167.93 Aligned_cols=174 Identities=21% Similarity=0.245 Sum_probs=159.7
Q ss_pred HHHHhhc-CCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLve-niDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++. +-++...+.+.|+++.|+.+|++++..+|..|+|+|++++.+.+..+..+++.|+++.|+.++.+ .+..++
T Consensus 77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~ 155 (252)
T 4db8_A 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQIL 155 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHH
Confidence 4566665 56778889999999999999999999999999999999999888766889999999999999986 588999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
..|+|+|++++.+.+.....+.+.|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++.|+.++.+++
T Consensus 156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC
Confidence 99999999999998888888889999999999999999999999999999999877788888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHc
Q 021251 163 PDVREAALRGLLELAR 178 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~ 178 (315)
..+++.|+.+|.+|++
T Consensus 236 ~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 236 EKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.84 E-value=2.3e-20 Score=186.31 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=176.7
Q ss_pred HHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC----CCH
Q 021251 5 LQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD----PDV 79 (315)
Q Consensus 5 L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd----~~~ 79 (315)
|..++.. -++...+++.|++|+|+.+|.+++..+|..|+|+|++++.+++.+++.+++.|++++|+.+|... ...
T Consensus 144 L~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 144 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 3444432 34567889999999999999999999999999999999999999999999999999999999753 235
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~ 159 (315)
.+...++|++++++++..+........++++.|+.+|.+++..++..|+|+|++|+.........+.+.|+++.|+.+|.
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 67889999999999998766555556789999999999999999999999999999877666778889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCcchhhh-hhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251 160 SEDPDVREAALRGLLELAREKADGSAI-KLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS 237 (315)
Q Consensus 160 s~d~~v~e~aL~aL~~L~~~~~~~~~~-c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~ 237 (315)
+++..++..++++|++|+.+++..... ...+....|..+|.+ . ...++ .+.||.|.+++.+.+.+
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---------~--~~~i~--~~a~~aL~nl~~~~~~~ 369 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---------P--KTNIQ--KEATWTMSNITAGRQDQ 369 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---------S--SHHHH--HHHHHHHHHHHTSCHHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---------C--CHHHH--HHHHHHHHHHhcccHHH
Confidence 999999999999999999887643211 001122233333321 1 12244 34789999999887654
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.83 E-value=2.5e-20 Score=185.61 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=157.0
Q ss_pred HHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC----CCH
Q 021251 5 LQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD----PDV 79 (315)
Q Consensus 5 L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd----~~~ 79 (315)
|..++ .+-++...+++.|++|+|+.+|++++.++|.+|+|+|++++.+++.+++.+++.|++++|+.++.+. ...
T Consensus 125 L~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 34443 3445677889999999999999999999999999999999999999999999999999999999763 235
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~ 159 (315)
.+++.++|++++++++..+........++++.|+.+|.+++..++..|+|+|++|+...+.....+.+.|+++.|+.+|.
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 67889999999999988665555555689999999999999999999999999999876666778889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCcc
Q 021251 160 SEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 160 s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+++..++..++++|++++.+++.
T Consensus 285 ~~~~~v~~~al~aL~nl~~~~~~ 307 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTGTDE 307 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCChhhhhHHHHHHHHhhcCCHH
Confidence 99999999999999999988753
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=181.08 Aligned_cols=224 Identities=14% Similarity=0.116 Sum_probs=173.2
Q ss_pred HHHHhhcCCC-ChhHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251 4 ELQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVT 80 (315)
Q Consensus 4 ~L~dLveniD-nA~d~~~~Gg-l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~ 80 (315)
.|..++.+-+ +...+...|| +|+|+.+|.+++.++|..|+|+|++++.+ ++.++..|.+.|++++|+++|.+..+..
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence 3566666554 4445556666 99999999999999999999999999985 7889999999999999999865556789
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchHHHHhcCchH
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCSVVDKLGFPR 152 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~-~~gGl~~L~~lL~s~~~----kl~~kA~~lLs~Ll~---~~~~~~~~l~~~g~v~ 152 (315)
++..|+.||.+|+.+++..+..+. ..||++.|+.+|.+.+. .++..|+++|++|+. .++..+..+.+.|+++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~ 382 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence 999999999999987766677777 78999999999997653 599999999999996 5778888999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHh
Q 021251 153 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACY 232 (315)
Q Consensus 153 ~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f 232 (315)
.|+.+|++++..+++.|+.+|++|+..++...... . +.+....| ++-+... + ...+ ...++-|++.+.
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-~--~~G~I~~L---v~LL~s~---~-~~v~--~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-W--DMGAVSML---KNLIHSK---H-KMIA--MGSAAALRNLMA 450 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH-H--HHTHHHHH---HTTTTCS---S-HHHH--HHHHHHHHHHHT
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH-H--HCCCHHHH---HHHHhCC---C-HHHH--HHHHHHHHHHHc
Confidence 99999999999999999999999997654332110 0 11112222 2222211 1 1233 346799999999
Q ss_pred CCCCccc
Q 021251 233 NEPSSLR 239 (315)
Q Consensus 233 ~~~~~~~ 239 (315)
+.|.-.|
T Consensus 451 ~~p~ky~ 457 (458)
T 3nmz_A 451 NRPAKYK 457 (458)
T ss_dssp CCSCC--
T ss_pred CCHhhhc
Confidence 8876554
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.81 E-value=1.1e-18 Score=174.14 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=174.6
Q ss_pred HHHhhcCCC-ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 5 LQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 5 L~dLveniD-nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
|.+++..-+ +...+...|+++.|+.+|.+++..++..|+++|++++..++..+..+++.|+++.|+.+|.+ ++..++.
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~ 353 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQK 353 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHH
Confidence 455555443 34456788999999999999999999999999999999999999999999999999999986 5789999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.|+|+|++++.+++.....+++.|+++.|+.+|.+.+.+++..|+|+|.+|+... ++....+++.|+++.|+.+|.+.|
T Consensus 354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 9999999999999888888899999999999999999999999999999998753 445677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHH--HHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251 163 PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGE--RIKGISLMSPEDLGAAREERHLVDSLWNACYNE 234 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~--~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~ 234 (315)
..++..++.+|.+|.+...... ....+...+++ .++.|+.+.. ....+-.+.+..|+..+|++
T Consensus 434 ~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~---~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQR---HENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTCHHHHTGGGG---CSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCCcHHHHHHHHc---CCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999875332110 01222233322 1223332210 11344566778999999976
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.81 E-value=9.2e-19 Score=173.16 Aligned_cols=220 Identities=15% Similarity=0.167 Sum_probs=175.8
Q ss_pred HHHHhhcC-CCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLven-iDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++.. .++...++..|++++|+.+|.+++..+|..|+|+|++++.+++.++..+++.|++++|+.++..+.+..++
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~ 220 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSML 220 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHH
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHH
Confidence 34555554 45667788889999999999999999999999999999999999999999999999999999666789999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
..|+|+|++|+++.+... .....|+++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++.|+.+|.+++
T Consensus 221 ~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 999999999999864433 3345799999999999999999999999999999766655678889999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcchhhhhh-hhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251 163 PDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~~~~~c~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~ 236 (315)
..+++.|+.+|++|+.+++....... .+....|...|. .-. ...++ .+.||.|.+.+.+.+.
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~~------~~~v~--~~A~~~L~nl~~~~~~ 362 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QNL------KKSIK--KEACWTISNITAGNKD 362 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SCC------CHHHH--HHHHHHHHHHHTSCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CCC------cHHHH--HHHHHHHHHHHCCCHH
Confidence 99999999999999987754331110 111233333332 210 12233 3478889888876654
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.80 E-value=8.1e-19 Score=168.44 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=159.7
Q ss_pred HHHhhcC--CCChhHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCCHHHHHHcccCCCCH-
Q 021251 5 LQEHVES--IDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDV- 79 (315)
Q Consensus 5 L~dLven--iDnA~d~~~~Ggl~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G~l~~Ll~LL~sd~~~- 79 (315)
|..|... -+|...+.+.||+++|+++| ++++..++..|+.+|.+++..++..+..+. ..|+++.|+++|.+..+.
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence 4555543 45778899999999999975 678999999999999999997777788887 789999999999865433
Q ss_pred --HHHHHHHHHhhhhhc---CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 021251 80 --TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 154 (315)
Q Consensus 80 --~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~L 154 (315)
.++..|+|+|++++. +++...+.+++.||++.|+.+|++.+.+++..|+++|.+|+..++..+..+.+.|+++.|
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 689999999999997 677788888999999999999999999999999999999997778888999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 155 LHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 155 v~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
+.+|++++..+++.|+.+|.+|+.+.+...
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999987654
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.80 E-value=1.4e-18 Score=172.95 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=174.1
Q ss_pred HHHhhcCCC-ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 5 LQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 5 L~dLveniD-nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
|..+++.-+ +...+...|+++.|+.+|.+++..++..|+++|++++..++..+..+++.|+++.|+.+|.+ ++..+|.
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~ 334 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQK 334 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHH
Confidence 555665543 34456788999999999999999999999999999999999999999999999999999986 5789999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.|+|+|++|+.+++.....+.+.|+++.|+.+|.+.+.++|..|+|+|.+++... +.....+++.|+++.|+.+|.+.|
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 9999999999999888888999999999999999999999999999999999753 445577899999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHH-----HHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251 163 PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGE-----RIKGISLMSPEDLGAAREERHLVDSLWNACYNE 234 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~-----~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~ 234 (315)
..++..++.+|.+|.+...... ....+...+++ .++.++. .+ ..+-.+.+..|+..||++
T Consensus 415 ~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~--~~----n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQR--HE----NESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTHHHHHHHGGG--CS----SHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCcHHHHHHHHc--CC----CHHHHHHHHHHHHHHCCC
Confidence 9999999999999875432110 01122222322 2333331 11 234456778999999986
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=171.70 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=158.5
Q ss_pred HHHhhcC--CCChhHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCCHHHHHHcccCCCCH-
Q 021251 5 LQEHVES--IDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDV- 79 (315)
Q Consensus 5 L~dLven--iDnA~d~~~~Ggl~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vl-e~G~l~~Ll~LL~sd~~~- 79 (315)
|..+... -+|...+.+.||+++|+++| .+++..++..|+.+|.+++..++..+..+. ..|+++.|+.+|.+..+.
T Consensus 267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 4455542 45677889999999999975 668899999999999999997777788887 789999999999875433
Q ss_pred --HHHHHHHHHhhhhhc---CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 021251 80 --TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 154 (315)
Q Consensus 80 --~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~L 154 (315)
.++..|.|+|++|+. +++...+.+++.||++.|+.+|.+.+.+++..|+|+|.+|+..++..+..+.+.|+|+.|
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~L 426 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 426 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 589999999999987 677888888999999999999999999999999999999997778888999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHcCCcchh
Q 021251 155 LHLASSEDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 155 v~LL~s~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
+.+|++++..+++.|+.+|.+|+.+++..+
T Consensus 427 v~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 427 KNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 999999999999999999999999987655
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.78 E-value=3.9e-18 Score=168.64 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=159.8
Q ss_pred HHHHhhcCCCC-hhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLveniDn-A~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++...++ ...+.+.|+++.|+.+|.+++..+|..|+++|++++..++..++.+++.|+++.|+.+|.+..+..++
T Consensus 267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 346 (528)
T 4b8j_A 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK 346 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHH
Confidence 35556655433 34677889999999999999999999999999999999999999999999999999999875488999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
..|+|+|++++.+++.....++..|+++.|+.+|.+.+.+++..|+++|.+|+.. .+.....+.+.|+++.|+.+|.+.
T Consensus 347 ~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 426 (528)
T 4b8j_A 347 KEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 9999999999998887778888999999999999999999999999999999986 466677888999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCcc
Q 021251 162 DPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+..++..++.+|.+|++....
T Consensus 427 d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876543
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.78 E-value=2e-18 Score=169.90 Aligned_cols=172 Identities=14% Similarity=0.188 Sum_probs=150.4
Q ss_pred HHHHHhhcCCCChh-HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 3 DELQEHVESIDMAN-DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 3 e~L~dLveniDnA~-d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
..|..++.+-++.. .+.+.||+|+|+++|+++++.++..|+|+|.+++..|+.++..+++.|++++|+++|..+.+..+
T Consensus 24 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~ 103 (457)
T 1xm9_A 24 YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI 103 (457)
T ss_dssp HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHH
Confidence 35667776655544 99999999999999999999999999999999999999999999999999999999984468999
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh--------cC--------CCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--------GS--------ESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL--------~s--------~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
+..|+|||++|+.+ +.....+++ ||++.|+.+| .+ .+..+++.|+|+|++|+.. +..+..+
T Consensus 104 ~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i 180 (457)
T 1xm9_A 104 QKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTM 180 (457)
T ss_dssp HHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHH
Confidence 99999999999998 666677888 9999999999 33 2467777999999999986 7788899
Q ss_pred Hhc-CchHHHHHhhCC------CChHHHHHHHHHHHHHH
Q 021251 146 DKL-GFPRLMLHLASS------EDPDVREAALRGLLELA 177 (315)
Q Consensus 146 ~~~-g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~ 177 (315)
.+. |+++.|+.+|.+ .+..+++.++.+|.+|+
T Consensus 181 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 998 999999999986 46678999999998886
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.77 E-value=6.2e-18 Score=161.96 Aligned_cols=169 Identities=20% Similarity=0.190 Sum_probs=151.1
Q ss_pred CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251 13 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 13 DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L 92 (315)
++...+++.|+++.|+.+|+++++.+|..|+|+|++++.+++..++.+++.|+++.|+.++.++.+..+|..|+|+|+++
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44556778899999999999999999999999999999999999999999999999999998767899999999999999
Q ss_pred hcCC-chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHH
Q 021251 93 IRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 171 (315)
Q Consensus 93 iR~~-~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~ 171 (315)
+++. +.....++ .++++.|+.+|.+++..++..++|+|.+|+...+.....+.+.|+++.|+.++.+++..+++.|+.
T Consensus 178 ~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 178 CRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp HCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred hCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 9886 33222232 789999999999999999999999999999876666778888999999999999999999999999
Q ss_pred HHHHHHcCCcc
Q 021251 172 GLLELAREKAD 182 (315)
Q Consensus 172 aL~~L~~~~~~ 182 (315)
+|.+++.+.+.
T Consensus 257 ~L~~l~~~~~~ 267 (450)
T 2jdq_A 257 AVGNIVTGDDI 267 (450)
T ss_dssp HHHHHTTSCHH
T ss_pred HHHHHhhCChH
Confidence 99999988754
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.77 E-value=7.1e-18 Score=167.26 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=173.8
Q ss_pred HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
|..++..- ++...++..|+++.|+.+|.+++..+|..|+|+|++++.+++..+..+++.|+++.|+.++.+ .+..++.
T Consensus 155 L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~ 233 (530)
T 1wa5_B 155 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIR 233 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHH
Confidence 34444432 355667788999999999999999999999999999999999999999999999999999987 6899999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCCh
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 163 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~ 163 (315)
.|+|+|++++++..+....+...++++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++.|+.++.+.+.
T Consensus 234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~ 313 (530)
T 1wa5_B 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh
Confidence 99999999999873444455668999999999999999999999999999998766667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 021251 164 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS 237 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~~ 237 (315)
.+++.|+.+|.+|+.+++...... . ..++...|-.. +.. . + ..++ .+.|+.|.+.+.+.+.+
T Consensus 314 ~v~~~a~~~L~~l~~~~~~~~~~~-~--~~~~l~~L~~l---L~~--~-~-~~vr--~~A~~aL~~l~~~~~~~ 375 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGNDLQTQVV-I--NAGVLPALRLL---LSS--P-K-ENIK--KEACWTISNITAGNTEQ 375 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHH-H--HTTHHHHHHHH---TTC--S-C-HHHH--HHHHHHHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHH-H--HcchHHHHHHH---HcC--C-C-HHHH--HHHHHHHHHHHcCCHHH
Confidence 999999999999998775432111 0 11222222222 221 1 1 2233 34678888888766544
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.77 E-value=3.1e-17 Score=157.15 Aligned_cols=177 Identities=21% Similarity=0.251 Sum_probs=157.4
Q ss_pred HHHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++... ++...+...|+++.|+.+|.+++..+|..|+++|++++.+++...+.+++.|+++.|+.++.+ ++..+|
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~vr 293 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIK 293 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC-SSHHHH
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC-CCHHHH
Confidence 355555543 455677788999999999999999999999999999999999888889999999999999986 588999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
..|+|+|++++++++...+.+++.|+++.|+.+|.+++.++|..|+|+|.+|+.. .+.....+.+.|+++.|+.++..+
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 373 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM 373 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 9999999999998888778888899999999999999999999999999999975 445566677889999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCc
Q 021251 162 DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~ 181 (315)
+..+++.|+.+|.+++....
T Consensus 374 ~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 374 DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhch
Confidence 99999999999999987654
No 22
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.76 E-value=4.3e-17 Score=148.14 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=158.7
Q ss_pred ChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 23 GLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 23 gl~~Ll~lL~s~~~--~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
.+++++++|.++++ .++..|++.|.+++.+++..+..|.+.|++|+|+++|.+ .+..++..|+|||.+|+.+++...
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999887 999999999999999899999999999999999999987 589999999999999999888888
Q ss_pred HHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC----------------CCCh
Q 021251 101 EAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS----------------SEDP 163 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~----------------s~d~ 163 (315)
..+.+.||++.|+++|. +.+..++..|+.+|.+|.. .+..+..+.+. .++.|+.++. +.+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 89999999999999998 5789999999999999986 45667777664 5899988763 1367
Q ss_pred HHHHHHHHHHHHHHcCCc---chhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH-HHHHHHHhC
Q 021251 164 DVREAALRGLLELAREKA---DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV-DSLWNACYN 233 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~---~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~-~~L~~~~f~ 233 (315)
.+++.|..+|.+|+..+. +..+.| .+--..|..+++..+.+-+. ++ ...|.| -.|++.||.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~~---~~-----k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQP---DD-----KATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTCT---TC-----HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhcccc---hh-----HHHHHHHHHHHHHHhh
Confidence 899999999999988663 223445 33335666666665543221 11 123344 566777764
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=153.74 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=147.8
Q ss_pred HHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|..++ ++-++...+.+.||+|+|+++|.+++.++|..|+|+|.+++..++..+..+.+.|++++|+++|.+..+..++
T Consensus 33 ~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~ 112 (233)
T 3tt9_A 33 FIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112 (233)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHH
Confidence 455666 4566788899999999999999999999999999999999999999999999999999999999855678999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc----------------CCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----------------SESVKFQRKALNLIQYLLNENASDCSVVD 146 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~----------------s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~ 146 (315)
..|+.||.+|..+ +.....+.+ +|++.|+.++. +.+..++..|..+|++|...+++.|+.+.
T Consensus 113 e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r 190 (233)
T 3tt9_A 113 KQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMR 190 (233)
T ss_dssp HHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999888888754 444455555 68999998763 23689999999999999987778888888
Q ss_pred hc-CchHHHHHhhCC------CChHHHHHHHHHHHHHHcC
Q 021251 147 KL-GFPRLMLHLASS------EDPDVREAALRGLLELARE 179 (315)
Q Consensus 147 ~~-g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~ 179 (315)
+. |+|+.|+.+++. .+...+|.|+.+|.+|+-.
T Consensus 191 ~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 191 RCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 76 789999999986 2567999999999998643
No 24
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.75 E-value=1.2e-16 Score=162.56 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=165.1
Q ss_pred HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC-Cch
Q 021251 20 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH-NKP 98 (315)
Q Consensus 20 ~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~-~~~ 98 (315)
..++++.|+.+|.+++..++..|+++|.+++..++..+..|++.|+|++|+.+|.+ .+..++..|+|||.+|+.+ +..
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHH
Confidence 35789999999999999999999999999999889999999999999999999987 5899999999999999986 577
Q ss_pred hHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC------------------
Q 021251 99 GIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS------------------ 159 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~------------------ 159 (315)
....+++.||++.|+.+|.+ .+..++..|+++|.+|.. ++..+..+.+ +.++.|+.++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 88899999999999999997 678999999999999987 5667777775 56999999871
Q ss_pred CCChHHHHHHHHHHHHHHcCCcc---hhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHH-HHHHHHHHhC
Q 021251 160 SEDPDVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL-VDSLWNACYN 233 (315)
Q Consensus 160 s~d~~v~e~aL~aL~~L~~~~~~---~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~-~~~L~~~~f~ 233 (315)
..+..+++.|..+|.+|+.++.. .+..| .+....|..+|+..+..-+. + ...++- ++.|++.||.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~---~-----~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDS---D-----SKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCC---S-----CHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCc---c-----HHHHHHHHHHHHHhhcc
Confidence 24679999999999999988743 33445 44445666666655433221 1 112343 4999999987
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.74 E-value=1.6e-16 Score=157.48 Aligned_cols=178 Identities=12% Similarity=0.116 Sum_probs=156.3
Q ss_pred HHHHhhcCC--CChhHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251 4 ELQEHVESI--DMANDLHSIGGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80 (315)
Q Consensus 4 ~L~dLveni--DnA~d~~~~Ggl~~Ll~lL~s~-~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~ 80 (315)
.|..++..- .+-..+++.|+++.|+.+|.++ ++.+|..|+|+|++++..++..+..+++.|+++.|+.+|.+ .+..
T Consensus 110 ~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~ 188 (530)
T 1wa5_B 110 KFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVE 188 (530)
T ss_dssp HHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHH
T ss_pred HHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHH
Confidence 344554432 3446788899999999999987 89999999999999999999999999999999999999986 5899
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
+|..|+|+|++++.+.+.....+...|+++.|+.+|.+.+..++..|+|+|.+|+.............|+++.|+.++.+
T Consensus 189 vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 268 (530)
T 1wa5_B 189 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 268 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC
Confidence 99999999999999888888888889999999999999999999999999999997653334455668999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCcc
Q 021251 161 EDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 161 ~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
++..++..|+.+|.+|+...+.
T Consensus 269 ~d~~v~~~a~~~L~~L~~~~~~ 290 (530)
T 1wa5_B 269 MDTETLVDACWAISYLSDGPQE 290 (530)
T ss_dssp CCHHHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999987653
No 26
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.74 E-value=5.2e-17 Score=159.79 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=149.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.++.++.+|+++++++|..|+++|++++.+++.++..+++.|+++.|+++|.+ .++.++..|+|||.+|+.+++.....
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 58999999999999999999999999999998888899999999999999987 58899999999999999988888889
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh--------CCC--------ChHH
Q 021251 103 FRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA--------SSE--------DPDV 165 (315)
Q Consensus 103 f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL--------~s~--------d~~v 165 (315)
+++.||++.|+++|. +.+..++..|+|+|.+|+.. +..+..+.+ |.++.|+.+| .++ +..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 88999999999999999986 778888888 9999999999 333 4556
Q ss_pred HHHHHHHHHHHHcCCcchh---hhhhhhhHHHHHHHHHHH
Q 021251 166 REAALRGLLELAREKADGS---AIKLAEDNEKLKQLLGER 202 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~~~~~---~~c~~~~~~~L~~~L~~~ 202 (315)
+..|+.+|.+|+.+ +... ..+ .+.-..|..+|.+.
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~-~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNY-SGLIDSLMAYVQNC 197 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTS-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHc-CCCHHHHHHHHHhh
Confidence 66999999999987 4221 211 14455666666653
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.73 E-value=1.8e-17 Score=173.95 Aligned_cols=163 Identities=16% Similarity=0.093 Sum_probs=143.0
Q ss_pred hHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251 16 NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 16 ~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
..+++.|++++|+.+|+++++.+|.+|+|+|++++. ++.++..+++.|++++|+.+|.+. +..++..|+|||++|+++
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcC
Confidence 467789999999999999999999999999999997 477999999999999999999874 678999999999999987
Q ss_pred CchhHHHH---HHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHH
Q 021251 96 NKPGIEAF---RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 171 (315)
Q Consensus 96 ~~~~~~~f---~~~gGl~~L~~lL~s~-~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~ 171 (315)
..+.. .| ...|+++.|+.+|.++ +...+..|+++|++|+..++..+..+++.|+++.|+.++.+++..+|+.|+.
T Consensus 567 ~~p~~-~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 567 INPEV-SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp SCHHH-HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CChhh-hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 55432 22 1247999999999976 4555678999999999877777888999999999999999999999999999
Q ss_pred HHHHHHcCCc
Q 021251 172 GLLELAREKA 181 (315)
Q Consensus 172 aL~~L~~~~~ 181 (315)
+|++|+.+..
T Consensus 646 ~L~NLa~~~~ 655 (810)
T 3now_A 646 CLCNLVMSED 655 (810)
T ss_dssp HHHHHTTSHH
T ss_pred HHHHHhCChH
Confidence 9999998654
No 28
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.70 E-value=1.2e-16 Score=162.36 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=150.3
Q ss_pred HHHHhh-cCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHH
Q 021251 4 ELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 4 ~L~dLv-eniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~v 81 (315)
.|..++ ++-++...+++.||+|+|+.+|++++..+|..|+|+|++++.. |+.++..|++.|++++|+.+|.+..+..+
T Consensus 71 ~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~ 150 (584)
T 3l6x_A 71 YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150 (584)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHH
Confidence 466777 4678888999999999999999999999999999999999985 79999999999999999999997667899
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc------------------CCCHHHHHHHHHHHHHHhhcCCcchH
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG------------------SESVKFQRKALNLIQYLLNENASDCS 143 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~------------------s~~~kl~~kA~~lLs~Ll~~~~~~~~ 143 (315)
+..|.+||.+|..+ +.....++. +|++.|++++. +.+.+++..|+++|.+|+..++..+.
T Consensus 151 ~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~ 228 (584)
T 3l6x_A 151 TEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228 (584)
T ss_dssp HHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999875 555556664 78999999871 24689999999999999987767788
Q ss_pred HHHhc-CchHHHHHhhCC------CChHHHHHHHHHHHHHHcC
Q 021251 144 VVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELARE 179 (315)
Q Consensus 144 ~l~~~-g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~ 179 (315)
.+.+. |+++.|+.++++ .+...+|.|+.+|.+|+..
T Consensus 229 ~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 88775 788999999975 5678999999999998865
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.69 E-value=4.2e-16 Score=146.11 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=139.9
Q ss_pred hHHHHHhhcCCC------------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHH-cccCCCCHHHHHHHHHHhh
Q 021251 24 LAPLLGYLKNSH------------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS-NFASDPDVTVRTKALGAIS 90 (315)
Q Consensus 24 l~~Ll~lL~s~~------------~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~-LL~sd~~~~vr~kAl~ALS 90 (315)
++-.+..|.++. .+-|..|+..|..++.+ ...+..|.+.|++++|+. +|.+ +++.+|..|+|+|+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 556677777652 25788999999999985 457788999999999999 9986 68999999999999
Q ss_pred hhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251 91 SLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA 169 (315)
Q Consensus 91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a 169 (315)
+++.+++..++.+++.||++.|+.+|++ ++..++++|+|+|++|+.+++...+.+.+.|.++.|+.+|++++..++..|
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999996 479999999999999998877777889999999999999999999999999
Q ss_pred HHHHHHHHcCCcc
Q 021251 170 LRGLLELAREKAD 182 (315)
Q Consensus 170 L~aL~~L~~~~~~ 182 (315)
+.+|.+|+.+++.
T Consensus 188 ~~aLs~L~~~~~~ 200 (296)
T 1xqr_A 188 AFLLQNLLVGHPE 200 (296)
T ss_dssp HHHHHHHHHHCGG
T ss_pred HHHHHHHHhCChH
Confidence 9999999988653
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.69 E-value=2.1e-16 Score=165.78 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=154.3
Q ss_pred HHHhhcCC-CChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCCHHHHHHcccCCCCHHHH
Q 021251 5 LQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 5 L~dLveni-DnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle-~G~l~~Ll~LL~sd~~~~vr 82 (315)
|..|...- ++...+++.|||+.|+.+|.+++..||..|+++|++++.+ +..|..+++ .|+++.|+.++.+ .+..+|
T Consensus 605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s-~d~~vq 682 (810)
T 3now_A 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCED-EDEETA 682 (810)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGC-SSHHHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcC-CCHHHH
Confidence 45555543 5677888999999999999999999999999999999985 568888886 6899999999987 588999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
..|.|||++++.+++...+.+++ .||++.|+.+|.+++.++|..|+|+|.+|+..+++....+.+.|+++.|+.+++..
T Consensus 683 ~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence 99999999999987777788887 89999999999999999999999999999987777788999999999999999764
Q ss_pred ---ChHHHHHHHHHHHHHHcCC
Q 021251 162 ---DPDVREAALRGLLELAREK 180 (315)
Q Consensus 162 ---d~~v~e~aL~aL~~L~~~~ 180 (315)
+..+.+.|+.+|..+.+.+
T Consensus 763 d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 763 DDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhCC
Confidence 6899999999999987654
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.67 E-value=1.1e-15 Score=149.42 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=160.1
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
..|..+..+-++...+.+.|+++.|+++|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.++.+ .+..++
T Consensus 82 ~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~ 160 (529)
T 1jdh_A 82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL 160 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHH
T ss_pred HHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHH
Confidence 3466677777788889999999999999999999999999999999999888888999999999999999987 578999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
..++.+|++++.+++.....+.+.||++.|+.+|++.+ ...+..++.+|.+|+. .+..+..+.+.|+++.|+.++.++
T Consensus 161 ~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~ 239 (529)
T 1jdh_A 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP 239 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCC
Confidence 99999999999988888889999999999999998754 6777788899999986 567788999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCcc
Q 021251 162 DPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+..+++.++.+|.+|+.+.+.
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTT
T ss_pred ChHHHHHHHHHHHHHhcCChh
Confidence 999999999999999987653
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.62 E-value=8.4e-15 Score=149.08 Aligned_cols=177 Identities=13% Similarity=0.119 Sum_probs=159.8
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
.|..++.+-++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+|.++ +..++.
T Consensus 80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~ 158 (644)
T 2z6h_A 80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLA 158 (644)
T ss_dssp HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHH
T ss_pred HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHH
Confidence 4666777777888899999999999999999999999999999999998877888899999999999999874 678888
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.++.+|++++.+++.....+...||++.|+.+|++.+ .+++..++.+|.+|+. .+..+..+.+.|+++.|+.++.+.+
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCC
Confidence 8889999999888888889999999999999999865 7888999999999986 5778889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcc
Q 021251 163 PDVREAALRGLLELAREKAD 182 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~ 182 (315)
..+++.++.+|.+|+.+.+.
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTT
T ss_pred HHHHHHHHHHHHHHhhcchh
Confidence 99999999999999987643
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=1.4e-14 Score=141.70 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=143.0
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
.+..|++++|+.+|+++++.+|..|+.+|++++.+.+ .+..++.. |+++.|+++|.++.+..++..|+.+|.+++++.
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 4568899999999999999999999999999998654 56666654 899999999986668899999999999999874
Q ss_pred chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
. ....+.+.||++.|+.+|+++++.++..|+++|.+|+..++..+..+.+.|+++.|+.++.+++..+++.++.+|.++
T Consensus 92 ~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4 677888999999999999999999999999999999987777788888999999999999999999999999999999
Q ss_pred HcCCc
Q 021251 177 AREKA 181 (315)
Q Consensus 177 ~~~~~ 181 (315)
+.+++
T Consensus 171 a~~~~ 175 (529)
T 1jdh_A 171 AYGNQ 175 (529)
T ss_dssp HTTCH
T ss_pred HhCCH
Confidence 88654
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.57 E-value=4.1e-14 Score=144.03 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=153.8
Q ss_pred HHHHHhhcCCCChhHHHHc-CChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHH
Q 021251 3 DELQEHVESIDMANDLHSI-GGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 80 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~-Ggl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~ 80 (315)
..|..++.+.++...+... |+++.|++.|.+ ++.++|..|+.+|.+++.+ +..+..+.+.|+++.|+.+|.+ .+..
T Consensus 36 ~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~ 113 (644)
T 2z6h_A 36 VMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS-PVDS 113 (644)
T ss_dssp HHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTC-SSHH
T ss_pred HHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhC-CCHH
Confidence 4566777776665555544 889999999986 4899999999999999986 5588999999999999999987 4789
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251 81 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 81 vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
++..|+++|.+++.+.+.....+++.|+++.|+.+|++++.+++..++.+|.+|+..++..+..+.+.|.++.|+.++++
T Consensus 114 v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193 (644)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence 99999999999999887777888899999999999999999999999999999998777888899999999999999998
Q ss_pred CC-hHHHHHHHHHHHHHHcCC
Q 021251 161 ED-PDVREAALRGLLELAREK 180 (315)
Q Consensus 161 ~d-~~v~e~aL~aL~~L~~~~ 180 (315)
.+ ..+++.++.+|.+|+...
T Consensus 194 ~~~~~~~~~a~~~L~nLs~~~ 214 (644)
T 2z6h_A 194 YTYEKLLWTTSRVLKVLSVCS 214 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTCT
T ss_pred CChHHHHHHHHHHHHHHhcCc
Confidence 54 678899999999998643
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.56 E-value=8.2e-14 Score=145.71 Aligned_cols=177 Identities=13% Similarity=0.127 Sum_probs=159.1
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHH
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 83 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~ 83 (315)
.|..+..+.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+|.+ .+..++.
T Consensus 216 aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~ 294 (780)
T 2z6g_A 216 TLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLA 294 (780)
T ss_dssp HHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHH
T ss_pred HHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHH
Confidence 456666666778889999999999999999999999999999999999988889999999999999999987 5789999
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~-~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.|+.+|.+++.+++.....+...||++.|+.+|++.+ ...+..++.+|.+|+. .+..+..+++.|+++.|+.++.+.+
T Consensus 295 ~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~ 373 (780)
T 2z6g_A 295 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS 373 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSC
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCc
Confidence 9999999999988888889999999999999999765 6777788999999986 5667888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcc
Q 021251 163 PDVREAALRGLLELAREKAD 182 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~ 182 (315)
..+++.|+.+|.+|+.....
T Consensus 374 ~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 374 QRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HHHHHHHHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhccchh
Confidence 99999999999999987753
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.47 E-value=2.9e-13 Score=141.55 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=143.6
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
.+..|+|+.|+.+|.++++.+|..|+.+|++++.+.+ .+..+.+. |+++.|+++|.++.+..+|..|+++|.+++++.
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~ 224 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR 224 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence 4458999999999999999999999999999998754 45566644 899999999987668999999999999998874
Q ss_pred chhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 97 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
. ....+.+.|+++.|+.+|++++..++..|+++|.+|+...+..+..+.+.|+++.|+.+|.+++..+++.++.+|..+
T Consensus 225 ~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 225 E-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4 467777889999999999999999999999999999988777788888999999999999999999999999999988
Q ss_pred HcCCc
Q 021251 177 AREKA 181 (315)
Q Consensus 177 ~~~~~ 181 (315)
+..+.
T Consensus 304 a~~~~ 308 (780)
T 2z6g_A 304 AYGNQ 308 (780)
T ss_dssp HTTCH
T ss_pred hcCCh
Confidence 86553
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.32 E-value=6.4e-12 Score=130.67 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=135.9
Q ss_pred ChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCH--HHHHHHHHHhhh
Q 021251 14 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV--TVRTKALGAISS 91 (315)
Q Consensus 14 nA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~--~vr~kAl~ALS~ 91 (315)
|...+.+.|++++|+.++.++++.+|..|+|+|.+++.+ +.++..+++.|++++|+.++.+.+.. .+|..|+.||++
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999965 88999999999999999999876433 289999999999
Q ss_pred hhcCCchhHHHHHH---cCcHHHHHHhhcC-CCH-------------HHHHHHHHHHHHHhhcCC----cchHHHHhc-C
Q 021251 92 LIRHNKPGIEAFRL---ANGYAALRDALGS-ESV-------------KFQRKALNLIQYLLNENA----SDCSVVDKL-G 149 (315)
Q Consensus 92 LiR~~~~~~~~f~~---~gGl~~L~~lL~s-~~~-------------kl~~kA~~lLs~Ll~~~~----~~~~~l~~~-g 149 (315)
|.-...+.. .|-. .|+++.|+.+|.. +.. .-+..|+.+|.+|+.... ..+..+++. |
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 986554432 3421 3899999999983 211 337789999999998642 236667775 9
Q ss_pred chHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 150 FPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 150 ~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+++.|..++.+++..+|..|+.++++|+.+..
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 99999999999999999999999999997554
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.4e-11 Score=123.75 Aligned_cols=178 Identities=18% Similarity=0.191 Sum_probs=139.9
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHH---HHHHHHHHHHHHh-hCCHHHHHHHHh---cCCHHHHHHcccC
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHAN---IRAKAGEVVTTIV-QNNPRSQQLVME---ANGLEPLLSNFAS 75 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~---vR~~Aa~~Lgtia-qNNp~~Q~~vle---~G~l~~Ll~LL~s 75 (315)
..|..++.+-++...+++.||+++|+.+|.+.... +|..|+.+|+++. ..||.. .|-. .|++++|+.||..
T Consensus 479 ~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~ 556 (778)
T 3opb_A 479 RIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPR 556 (778)
T ss_dssp HHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCC
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCC
Confidence 45778889999999999999999999999886544 8999999999988 456764 2212 3899999999983
Q ss_pred CCCH-------------HHHHHHHHHhhhhhcCCc----hhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 76 DPDV-------------TVRTKALGAISSLIRHNK----PGIEAFRLA-NGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 76 d~~~-------------~vr~kAl~ALS~LiR~~~----~~~~~f~~~-gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
++.. -.+..|+.||.||+.... .....++.. |+++.|..+|.+++..+|+.|++++.+|+.+
T Consensus 557 ~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 557 STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH 636 (778)
T ss_dssp SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 2111 237799999999998763 345667775 9999999999999999999999999999974
Q ss_pred CCcch-HHHHhc------CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251 138 NASDC-SVVDKL------GFPRLMLHLASSEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 138 ~~~~~-~~l~~~------g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
+... ..+.+. +-++.|+.|++++|.++|..|..+|.++++.++..
T Consensus 637 -~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 637 -PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp -GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred -cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence 4432 233222 23778999999999999999999999998777543
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.21 E-value=6.9e-11 Score=120.45 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=139.5
Q ss_pred HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhc-CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 20 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 20 ~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~-~Q~~vle~-G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+-++++.|+.+|++++-.+|..|..+|..++.++|. .|+.++.. +|++.|+.+|+. ..+.+|-.|+..|+.|+++++
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~ 198 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNG 198 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCH
Confidence 467899999999999999999999999999999998 99999976 999999999975 579999999999999999999
Q ss_pred hhHHHHHHcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChH------H-H
Q 021251 98 PGIEAFRLANGYAALRDALGSES----VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD------V-R 166 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~~----~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~------v-~ 166 (315)
..++.+.-.|+++.|+.++..+. ..+..+++.++.+|++.++.++..|.+.|.+++|..++..++.. . .
T Consensus 199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~ 278 (651)
T 3grl_A 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT 278 (651)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence 99988888899999999998754 58999999999999999999999999999999999999864321 1 1
Q ss_pred --HHHHHHHHHHHcCC
Q 021251 167 --EAALRGLLELAREK 180 (315)
Q Consensus 167 --e~aL~aL~~L~~~~ 180 (315)
-.++.++.-++..+
T Consensus 279 N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 279 NLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 22455566666554
No 40
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.20 E-value=6.8e-11 Score=122.01 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=134.0
Q ss_pred HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC-ch
Q 021251 20 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN-KP 98 (315)
Q Consensus 20 ~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~-~~ 98 (315)
.-..+.|+++.|+|+++..|..||++|+++++ ++..+..+++.|++.+++.-+-.|++.+||+.|++||.||+.+. ..
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34467889999999999999999999999998 68899999999999988776556789999999999999999764 44
Q ss_pred hHHHHHHcCcHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 021251 99 GIEAFRLANGYAALRDALGSES---------------------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 157 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s~~---------------------~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~L 157 (315)
....++..|+++.|..+|.+.. ..+...++.+|.+|+.........+.+.+.++.|+.+
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 5566778899999998885421 1233457788889987766666778888999999998
Q ss_pred hCC---CChHHHHHHHHHHHHHHcCCcchh
Q 021251 158 ASS---EDPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 158 L~s---~d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
|.+ ...+++..|+.+|..++.+++.+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~ 220 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVG 220 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHH
Confidence 855 246799999999999999998654
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.04 E-value=9.7e-10 Score=112.07 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=139.9
Q ss_pred hhHHHHc-CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCC---CHHHHHHHHHHhh
Q 021251 15 ANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAIS 90 (315)
Q Consensus 15 A~d~~~~-Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~---~~~vr~kAl~ALS 90 (315)
-..+... +|++.|+.+|.++...||..|.-+|..++.+|+.+|+.|.-.|++++|+.++..+. .-.+...++..|.
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 4455544 99999999999999999999999999999999999999999999999999998753 2257789999999
Q ss_pred hhhcCCchhHHHHHHcCcHHHHHHhhcCCCH------HHHHH---HHHHHHHHhhcCC------cchHHHHhcCchHHHH
Q 021251 91 SLIRHNKPGIEAFRLANGYAALRDALGSESV------KFQRK---ALNLIQYLLNENA------SDCSVVDKLGFPRLML 155 (315)
Q Consensus 91 ~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~------kl~~k---A~~lLs~Ll~~~~------~~~~~l~~~g~v~~Lv 155 (315)
+|.|+++..|..|.+.|+++.|..+|..+.. ..... ++.+++-|+..+. .++..+.+.|+++.|+
T Consensus 238 nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll 317 (651)
T 3grl_A 238 NLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLC 317 (651)
T ss_dssp HHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999986431 12222 5566666665422 3467888999999999
Q ss_pred HhhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251 156 HLASSE--DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 156 ~LL~s~--d~~v~e~aL~aL~~L~~~~~ 181 (315)
.++.+. ...++..|+.++..++++++
T Consensus 318 ~ll~~~~~p~~i~~~Al~tla~~irgN~ 345 (651)
T 3grl_A 318 TILMATGVPADILTETINTVSEVIRGCQ 345 (651)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence 999886 57899999999999999987
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=7.8e-08 Score=82.58 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=63.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++.|+.+|.++++.+|..|+++|+.+.. ..+++.|+.+|.+ ++..+|..|+++|+.+..
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--------- 105 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD--------- 105 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc---------
Confidence 3444444444444444444444444321 1234555555443 345555555555555421
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
...++.|+.+|.+++..++..|+++|..+-. ...++.|+.++.+++..+|..|+.+|..+
T Consensus 106 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 106 --ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1245556666666666666666666655531 24566677777777777777777777766
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.83 E-value=1.9e-07 Score=80.69 Aligned_cols=121 Identities=21% Similarity=0.168 Sum_probs=83.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
+.++.|+.+|++++..+|..|+++|+.+.. ..+++.|+.+|.+ ++..+|..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD-EDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence 457888888888888888888888887653 2457777777764 577788888888877631
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
...++.|+.+|.+++..++..|+++|..+-. .+.++.|+.++.+++..+|..|+.+|..+
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 2456667777777777777777777766632 13455666666666666666666666655
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.82 E-value=1.9e-07 Score=80.17 Aligned_cols=123 Identities=21% Similarity=0.177 Sum_probs=105.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
++.+.++.+|+++++.+|..|+++|+.+.. .+.++.|+.+|. +++..+|..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-------
Confidence 467889999999999999999999997653 256899999986 4689999999999998732
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
...++.|+.+|.+++..+|..|+++|..+-. ...++.|+.++.+++..+|..|+.+|..+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 2578889999999999999999999988742 2478889999999999999999999998854
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.77 E-value=1.4e-07 Score=81.57 Aligned_cols=122 Identities=23% Similarity=0.226 Sum_probs=104.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
.+++.|+.+|.+++..+|..|+++|+.+.. .++++.|+.+|.+ ++..+|..|+++|+.+..
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~------- 110 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD------- 110 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-------
Confidence 468999999999999999999999998863 2468889999865 689999999999998742
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
...++.|+.+|.+++..++..|+++|..+-. ...++.|+.++..++..+|..|+.+|..+.
T Consensus 111 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 111 ----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2467889999999999999999999998842 247888999999999999999999999883
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.74 E-value=1.9e-07 Score=84.25 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 021251 76 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML 155 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv 155 (315)
+++..||..|+++|+.+..+.+... ...++.|..+|.+++..++..|+++|..+.. .+.++.|+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~ 165 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLI 165 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHH
Confidence 3455666666666666543332111 1235566666777777777777776665532 24788888
Q ss_pred HhhCCCChHHHHHHHHHHHHHHc
Q 021251 156 HLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 156 ~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
.++.+++..+|..|+.+|..+..
T Consensus 166 ~~l~d~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 166 NLLKDPNGDVRNWAAFAININKY 188 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHhhcc
Confidence 88888888888888888888743
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.62 E-value=2e-06 Score=77.49 Aligned_cols=138 Identities=12% Similarity=0.027 Sum_probs=106.1
Q ss_pred HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc
Q 021251 18 LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 18 ~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+.+-+.++.|+.+|.++++.+|..|+++|+.+.. + +.++.|+.++.+ ++..+|..|+++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc
Confidence 3456789999999999999999999999998862 2 357889999875 688999999999999854322
Q ss_pred hhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 98 PGIEAFRLANGYAALR-DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~-~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
. .. ..++.|. .++++++..++..++++|..+...++.. ...+++.|+.++.+++..+|..|+.+|..+
T Consensus 87 ~-~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 87 C-ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp T-HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred c-ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 1 11 1334454 3567889999999999999997544322 224678899999999999999999999887
Q ss_pred Hc
Q 021251 177 AR 178 (315)
Q Consensus 177 ~~ 178 (315)
..
T Consensus 156 ~~ 157 (280)
T 1oyz_A 156 ND 157 (280)
T ss_dssp --
T ss_pred CC
Confidence 54
No 48
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.59 E-value=6.4e-08 Score=99.78 Aligned_cols=173 Identities=14% Similarity=0.036 Sum_probs=134.5
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCC-----
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASD----- 76 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd----- 76 (315)
.|..++++-.+..-+.+.|++.+++ .+|.+++.+||..|++++++++.. .+.+...++..|++++|+.+|.+.
T Consensus 57 al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~ 136 (684)
T 4gmo_A 57 AIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLT 136 (684)
T ss_dssp HHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHh
Confidence 4778888877888899999999877 578889999999999999999986 588899999999999999988531
Q ss_pred --------CC-------HHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC---CCHHHHHHHHHHHHHHhhcC
Q 021251 77 --------PD-------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---ESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 77 --------~~-------~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s---~~~kl~~kA~~lLs~Ll~~~ 138 (315)
.. ..+...++++|.+|+.++..+...+...++++.|+..|.+ ....++..|+.+|..|..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 137 TSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp CBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 01 1234467888899998888888888889999999999854 24789999999999999888
Q ss_pred CcchHHHHhcCchH---HHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 139 ASDCSVVDKLGFPR---LMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 139 ~~~~~~l~~~g~v~---~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
+...+.+.+.+... .+..+..+ +...+-.+...|.++.
T Consensus 217 ~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 217 LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 77777777776432 33333333 3334555666777663
No 49
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=1.1e-08 Score=83.21 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=91.6
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
-..++.++.+|+++++.+|..|+++++.+... .++.|+.+|.+ ++..||..|+++|+.+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC------
Confidence 34577888999999999999999999876421 36889999874 789999999999999742
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
...++.|+.+|.+++..+|..|+++|..+-. ...++.|+.+++.++..++..|..+|..
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1247889999999999999999999998742 2357889999998999999999988764
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=1.1e-05 Score=71.45 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=112.2
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 24 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 24 l~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
++.|..+|. +.+..||..|+.+++.++..- +.+..++- ..++.|+..+.. +...||..|..||..++.... ..
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~ 132 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTS--LE 132 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC--HH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC--HH
Confidence 666778884 899999999999999999631 12222211 368999999874 688999999999999987643 22
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-Cc--chHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-AS--DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~--~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
. -++.|...|++.+.++|..++.+|..++... +. ....+ . .+++.|+.++...+..+|..|..++..++.
T Consensus 133 ~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 133 A-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 3566888899999999999999999977653 22 11222 2 588999999999999999999999999876
Q ss_pred CCc
Q 021251 179 EKA 181 (315)
Q Consensus 179 ~~~ 181 (315)
.-.
T Consensus 206 ~vg 208 (242)
T 2qk2_A 206 LMG 208 (242)
T ss_dssp HHC
T ss_pred HcC
Confidence 543
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.35 E-value=2.2e-06 Score=86.51 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=112.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-----
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG----- 99 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~----- 99 (315)
+.+.++|.++++.||..|+++++.+.+.+|.. +-+.++++.|..+|. |++..|+..|+++|+.++.+.+..
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 45778999999999999999999999987753 333577899999986 679999999999999999876521
Q ss_pred ----HHHHHH----------------------------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CCcchHH
Q 021251 100 ----IEAFRL----------------------------ANGYAALRDALGSESVKFQRKALNLIQYLLNE---NASDCSV 144 (315)
Q Consensus 100 ----~~~f~~----------------------------~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~---~~~~~~~ 144 (315)
...++. ...++.+..+|++.+..++..|++++.++... +++....
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~ 279 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM 279 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 222221 12355666667888889999999999998742 2332222
Q ss_pred HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+ -..+.+.|+.++. .+.++|-.|+++|..++...+.
T Consensus 280 ~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~ 315 (591)
T 2vgl_B 280 L-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE 315 (591)
T ss_dssp H-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS
T ss_pred H-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH
Confidence 2 2345677776664 7889999999999999876553
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.32 E-value=1.1e-05 Score=81.45 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=117.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
+++.+++++.+++..+|..+...+..++..+|+.. .-++..|.+-+.+ +++.+|..|+.+|+++. .+.....
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~--~~~~~~~ 121 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCED-PNPLIRALAVRTMGCIR--VDKITEY 121 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC--SGGGHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC--hHHHHHH
Confidence 57788899999999999999999999988766542 2245667777765 68999999999999985 2332222
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
-++.+..+|.++++.+|.+|+.++..+...+++ .+.+.++++.+..+|..++..++..|+.+|..++.+.+
T Consensus 122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999999986654 34456889999999999999999999999999998876
No 53
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.29 E-value=1.3e-06 Score=91.00 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhh
Q 021251 37 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL 116 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL 116 (315)
.+|..|+.+++.++...+ +.++. ..++.+..++.+ ++..+|..|++||++++.+.......++ ...++.++.+|
T Consensus 336 ~vr~~a~~~L~~la~~~~---~~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l 409 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYR---DELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCL 409 (852)
T ss_dssp CHHHHHHHHHHHHHHHHG---GGGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcc---HHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHc
Confidence 479999999999997644 22332 356777777765 5899999999999999988765333332 46789999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251 117 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 117 ~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
++++..+|..|+|++..++...........-.++++.++..+..++..+|+.|+.+|.+++......
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999999999999988632111000111257788888998889999999999999998765433
No 54
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.26 E-value=1.4e-06 Score=90.91 Aligned_cols=152 Identities=13% Similarity=0.011 Sum_probs=108.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh-HH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-IE 101 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~-~~ 101 (315)
.++.+..+|++++..+|..|++++|.++...+..-... -.++++.|+.++. |++..||..|+|+|+.++...... ..
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 34555577888999999999999999998766422221 2357888999986 568999999999999998653221 11
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHc
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 178 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~ 178 (315)
.+ ..+.++.|+..|.+++.++|..|+++|..++........... .++++.|+.+++..+......++.++..++.
T Consensus 438 ~~-~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 438 TY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp TT-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 12 235678888999889999999999999999964332211111 2567778888877666666666777777653
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.22 E-value=1.3e-05 Score=78.60 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=100.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++.++.+|.+++..||..|+.+++.++..... .+.-...++.|+.++. +++..+|..++++++.+++.... .+
T Consensus 443 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~---~~ 515 (588)
T 1b3u_A 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQ---DI 515 (588)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCH---HH
Confidence 56666777888888888888888888764221 1223456777777754 46778888888888888764322 22
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
....-++.|...+.+++..+|..+++++..+...-.. .+....+++.|..++...|.++|+.|..+|..+.
T Consensus 516 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 3345778888888888888888888888888754221 1222356666777777778888888888887653
No 56
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.1e-05 Score=72.99 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=114.6
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCC--HHHH-HHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 24 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNN--PRSQ-QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 24 l~~Ll~lL-~s~~~~vR~~Aa~~LgtiaqNN--p~~Q-~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
+..|.+.| +..|..+|..|+.+|+.++..- +.++ .+... .++.++..+.. ....|+..|..|+-.++.+..+.
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcccc
Confidence 66777888 7889999999999999999631 2332 22222 58999999874 67899999999999998865331
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH-H--hcCchHHHHHhhCCCChHHHHHHHHHHHHH
Q 021251 100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV-D--KLGFPRLMLHLASSEDPDVREAALRGLLEL 176 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l-~--~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L 176 (315)
...-.-..-++.|...|++.+..+|.-++.+|..++...+.....+ . ...+++.|..++...+..+|+.|..+|..+
T Consensus 139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1000001245678888999999999999999999997654321222 2 247899999999999999999999999988
Q ss_pred HcCC
Q 021251 177 AREK 180 (315)
Q Consensus 177 ~~~~ 180 (315)
++.-
T Consensus 219 ~~~v 222 (249)
T 2qk1_A 219 IKIF 222 (249)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7544
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.17 E-value=1.3e-05 Score=78.38 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=110.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++.+..+++++++.||..|+.+++.++...+. .......++.|+.++. +.+..+|..|+.+|+.++...+.. .
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~ 238 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQE---D 238 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCHH---H
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCHH---H
Confidence 44555677788899999999999988876432 1223456788888775 457899999999998887654431 1
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
....-++.+..++.+++.++|..|+.+|..+...... + .....+++.++.++..++..+|..|+.+|..++....
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 2234677888888888899999999999998863221 1 2234578999999999999999999999999987654
No 58
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=3.6e-05 Score=68.21 Aligned_cols=161 Identities=10% Similarity=0.155 Sum_probs=119.3
Q ss_pred HHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHH
Q 021251 6 QEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKA 85 (315)
Q Consensus 6 ~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kA 85 (315)
.|+++..|.-..+- +.+...+.+.+-..|..|+..|+.++..++.....-. ...++.|..++..|.+..|+..|
T Consensus 4 ~d~~~~~di~~~l~-----~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a 77 (242)
T 2qk2_A 4 MDLLDPVDILSKMP-----KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMA 77 (242)
T ss_dssp HHTTSCBCCGGGSC-----TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhCCcccccccCC-----HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHH
Confidence 34555555433221 3477888999999999999999999886543211000 13466677777545789999999
Q ss_pred HHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHH
Q 021251 86 LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV 165 (315)
Q Consensus 86 l~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v 165 (315)
+.+|+.++++-...+..+. ..-++.|...+.+++..+|..|+.++..++...+ + ..+++.+...+.+.+..+
T Consensus 78 ~~~l~~la~~l~~~~~~~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~v 149 (242)
T 2qk2_A 78 GKCLALLAKGLAKRFSNYA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSV 149 (242)
T ss_dssp HHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHH
Confidence 9999999976544444443 2468899999999999999999999999987432 1 136788899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 021251 166 REAALRGLLELAREK 180 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~ 180 (315)
|+.++.+|..++...
T Consensus 150 r~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 150 KSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999976554
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.12 E-value=1.4e-05 Score=75.90 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=108.5
Q ss_pred hHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCC-CHHHHHHHHHHhhhhhcCCchh
Q 021251 24 LAPLLGYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 24 l~~Ll~lL~s~--~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
++.|+.++.++ +..+|..|+.+++.++... +..-...+. ..++.++..+.++. +..||..|+.++++++......
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677787 8999999999999999754 322111111 36788888887653 7899999999999976432211
Q ss_pred H--HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 100 I--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 100 ~--~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
. ..+. .--++.+...+.+++..++..++.+|..++...+.........++++.++..++..+..++..++.++..++
T Consensus 209 ~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 209 FDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 1 1111 113566777788889999999999999999765432211122267777888888889999999999998887
Q ss_pred cC
Q 021251 178 RE 179 (315)
Q Consensus 178 ~~ 179 (315)
..
T Consensus 288 ~~ 289 (462)
T 1ibr_B 288 DE 289 (462)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.12 E-value=0.00013 Score=74.90 Aligned_cols=153 Identities=14% Similarity=0.080 Sum_probs=108.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH--H
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI--E 101 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~--~ 101 (315)
+.+...|.+.+..+|..|++++|.++... ++.-...++ .+++.|+..+.. ++..+|..++|+|+.++....... .
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 33445667889999999999999999764 232222232 468888888864 689999999999999987533210 1
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC----c-chHHHHhcCchHHHHHhhCCCC--hHHHHHHHHHHH
Q 021251 102 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA----S-DCSVVDKLGFPRLMLHLASSED--PDVREAALRGLL 174 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~----~-~~~~l~~~g~v~~Lv~LL~s~d--~~v~e~aL~aL~ 174 (315)
.+. ..-++.|+..|+++ .+++..|++++..++.... . ....+ ..+++.|+.++.+.+ ..+|..++.+|.
T Consensus 450 ~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 450 QHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 111 24567788888776 9999999999999986422 1 11112 245778888888644 789999999999
Q ss_pred HHHcCCcch
Q 021251 175 ELAREKADG 183 (315)
Q Consensus 175 ~L~~~~~~~ 183 (315)
.++......
T Consensus 526 ~l~~~~~~~ 534 (861)
T 2bpt_A 526 TMVEYATDT 534 (861)
T ss_dssp HHHHHCCGG
T ss_pred HHHHHcchh
Confidence 999877643
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.11 E-value=3.8e-05 Score=79.01 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=109.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhH--
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-- 100 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp-~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~-- 100 (315)
++.+...|.+++..+|..|++++|.++.... ..-...+ ...++.|+..+. |++..||..|+|+|+.++...+...
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 3444466778899999999999999998653 3222222 347888999986 4689999999999999998765421
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--------------c-chHHHHhcCchHHHHHhhCCC---C
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--------------S-DCSVVDKLGFPRLMLHLASSE---D 162 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~--------------~-~~~~l~~~g~v~~Lv~LL~s~---d 162 (315)
..++ ...++.|...|.++ .+++..|+++|..++.... . ....+ ..+++.|+.++... +
T Consensus 446 ~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 446 DVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp TTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCS
T ss_pred HHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcch
Confidence 1121 24567788888775 9999999999999986421 0 11111 14677777777764 4
Q ss_pred hHHHHHHHHHHHHHHcCCcc
Q 021251 163 PDVREAALRGLLELAREKAD 182 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~~ 182 (315)
..++..++.+|..++.....
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCS
T ss_pred hhHHHHHHHHHHHHHHHCch
Confidence 57999999999999887653
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.09 E-value=7.8e-06 Score=83.07 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=108.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++.+.++|.++++.||..|+.+++.+...+|..- .+.++.+..++. |.++.|+..|+++|+.++.+++.....|
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 5677789999999999999999999999888542 267788888876 5789999999999999988765433333
Q ss_pred HHcCcHHHHHHhhc---------------CCCHHHHHHHHHHHHHHhhcCCcchH-------------------------
Q 021251 104 RLANGYAALRDALG---------------SESVKFQRKALNLIQYLLNENASDCS------------------------- 143 (315)
Q Consensus 104 ~~~gGl~~L~~lL~---------------s~~~kl~~kA~~lLs~Ll~~~~~~~~------------------------- 143 (315)
. .-++.++..|. ..++-+|.+++.+|+.+...++...+
T Consensus 218 ~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 218 R--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp H--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 2 34555555443 24677777777777777654332110
Q ss_pred ----HHHhc--------CchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 144 ----VVDKL--------GFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 144 ----~l~~~--------g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
.+... ..+..|..++.+.+.++|..|+.+|..++...+.
T Consensus 296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~ 346 (618)
T 1w63_A 296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN 346 (618)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH
Confidence 01111 2466788888888999999999999999877653
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.07 E-value=2.5e-06 Score=68.95 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=73.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.++.|+.+|+++++.||..|++++|.+.. + .+++.|+.++. +++..||..|++||+.+..
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLE-DDSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc--------
Confidence 47899999999999999999999998863 2 24788899886 4688999999999998741
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQY 133 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~ 133 (315)
...++.|..+|++++..++..|+++|..
T Consensus 103 ---~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ---ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357889999999999999999988754
No 64
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.2e-05 Score=70.27 Aligned_cols=224 Identities=15% Similarity=0.185 Sum_probs=132.6
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccC--
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLLGYL--KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFAS-- 75 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll~lL--~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~s-- 75 (315)
||.|.|+.++|...-.+.... +..|-.++ .+..+.+|+.|+.+||.+-+|||.+-+.|.+. ..+..+..-|..
T Consensus 49 LD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~ 127 (315)
T 3qml_C 49 FDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLN 127 (315)
T ss_dssp HHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHh
Confidence 789999999999998888743 55555544 45778899999999999999999999988875 333333333221
Q ss_pred ----CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcC--C-------c
Q 021251 76 ----DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNEN--A-------S 140 (315)
Q Consensus 76 ----d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~--~~kl~~kA~~lLs~Ll~~~--~-------~ 140 (315)
.....++..-+++|..|+.+. ..| ...|+..|..++... +..+|+|++.++..+.... . .
T Consensus 128 ~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~ 202 (315)
T 3qml_C 128 DSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKADMYENDDTNLIL 202 (315)
T ss_dssp CC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred hcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcccccccccccccch
Confidence 134567777789999999874 223 356888898888777 9999999999999887411 1 1
Q ss_pred chHHHHh-----cCchHHHHHhhCCCC--hHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHH----HHHHhhcc--
Q 021251 141 DCSVVDK-----LGFPRLMLHLASSED--PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLL----GERIKGIS-- 207 (315)
Q Consensus 141 ~~~~l~~-----~g~v~~Lv~LL~s~d--~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L----~~~~~~i~-- 207 (315)
.++-+.+ .+++..+-.++.... ..-..+-...|.+|.+.....+ .|...+.+-| +.|.+..+
T Consensus 203 ~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~~~~l-----K~~~~FLnWLa~E~e~Rk~~~~~~ 277 (315)
T 3qml_C 203 FKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIFKSDI-----TINKGFLNWLAQQCKARQSNLDNG 277 (315)
T ss_dssp -----------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHGGGS-----CCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred hhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhccccc-----CCCHHHHHHHHHHHHHHHhhhccc
Confidence 1111111 124455666666532 2233556678888877553221 2233444443 33444432
Q ss_pred --CCChhhHHHHHHHHHHHHHHH---HHHhCCCCcccccce
Q 021251 208 --LMSPEDLGAAREERHLVDSLW---NACYNEPSSLRDKGL 243 (315)
Q Consensus 208 --~~~~ed~~~~~eE~~~~~~L~---~~~f~~~~~~~~~~~ 243 (315)
..+.| +.+|=..|+ +..||+|-.+|=|.+
T Consensus 278 ~~~rd~e-------q~~FD~~li~sRH~VFGNPma~R~K~~ 311 (315)
T 3qml_C 278 LQERDTE-------QDSFDKKLIDSRHLIFGNPMAHRIKNF 311 (315)
T ss_dssp CSCCCHH-------HHHHHHHHHHHHTTTC-----------
T ss_pred cccCChH-------HHHHHHHHHHHHHHHcCCchhhhhhhc
Confidence 22333 344444444 489999999985543
No 65
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.01 E-value=0.00014 Score=65.84 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=111.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
.+..|+.+|...++.++.+|..+|+.+...-|..-....=...++.++.++.+ .++.+..+|+-+|..++.+-+...+.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 57788899999999999999999999988644443333334579999999865 68999999999999999998887777
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
|.+ -...|..++.+++.-++..|+..+..+ .- -.. ..+++..+..++.+.|..++..++++|.+++..+
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv-~~~-----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QP-LED-----SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CB-SCC-----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Cc-ccc-----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 765 456677777777777888777777776 11 111 1134456667777777778888888887777655
No 66
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.96 E-value=0.0002 Score=67.79 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=125.2
Q ss_pred HHHH-hhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCCHHHHHHcccCCCCHHH
Q 021251 4 ELQE-HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTV 81 (315)
Q Consensus 4 ~L~d-LveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle-~G~l~~Ll~LL~sd~~~~v 81 (315)
.|.. +-++.+-|..|++.+|+..|++.....+...+.++..+++.+.-. ..--+.+++ ...+..+..++.+ .+..|
T Consensus 141 sLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~~~fI~~lyslv~s-~~~~V 218 (339)
T 3dad_A 141 SLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVAHSDTIQWLYTLCAS-LSRLV 218 (339)
T ss_dssp HHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHGGGC-SCHHH
T ss_pred HHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhCCHHHHHHHHHHHcC-ccHHH
Confidence 4555 557899999999999999999999999999999999999999864 334455554 3578888999885 67889
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHH-------cCc---HHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCCcch------
Q 021251 82 RTKALGAISSLIRHNKPGIEAFRL-------ANG---YAALRDALG---SESVKFQRKALNLIQYLLNENASDC------ 142 (315)
Q Consensus 82 r~kAl~ALS~LiR~~~~~~~~f~~-------~gG---l~~L~~lL~---s~~~kl~~kA~~lLs~Ll~~~~~~~------ 142 (315)
...|+.-|-++|-..+.....+.+ ..| ++.|+.+|+ +.|..++.+|..+|..++..-+...
T Consensus 219 ~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~ 298 (339)
T 3dad_A 219 VKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVT 298 (339)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 888999888888776655444433 223 889999998 6789999999999999998755322
Q ss_pred HHHHhcCchHHHHHhhCCC--ChHHHHH
Q 021251 143 SVVDKLGFPRLMLHLASSE--DPDVREA 168 (315)
Q Consensus 143 ~~l~~~g~v~~Lv~LL~s~--d~~v~e~ 168 (315)
+.+.+.|+-..+..++.+. +.+++++
T Consensus 299 d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 299 DALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 3455667777777777763 5555544
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.88 E-value=4.1e-05 Score=72.57 Aligned_cols=156 Identities=8% Similarity=0.048 Sum_probs=112.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH-----------------HHHh---cCCHHHHHHcccCC-----
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ-----------------LVME---ANGLEPLLSNFASD----- 76 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~-----------------~vle---~G~l~~Ll~LL~sd----- 76 (315)
+.++.++..+++.+..+|..|++.+++++........ .+++ ...++.|++.+...
T Consensus 259 ~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~ 338 (462)
T 1ibr_B 259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD 338 (462)
T ss_dssp THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccc
Confidence 4566677788889999999999999999875211100 0111 23566677776431
Q ss_pred -CCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHH
Q 021251 77 -PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLM 154 (315)
Q Consensus 77 -~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~~l~~~g~v~~L 154 (315)
.+..+|..|..+|+.++..... .++ ...++.+...|++.+.++|..|+++|+.++.+.... .... -..+++.+
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l 413 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTL 413 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHH
Confidence 2347899999999999876552 222 246678888899999999999999999999753311 1111 13689999
Q ss_pred HHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 155 LHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 155 v~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+.++..++..+|..|+.+|..++.....
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999876543
No 68
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.86 E-value=7.4e-05 Score=67.50 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=113.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-HhhCCHHHHHHHHh-cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc-hhHH-H
Q 021251 27 LLGYLKNSHANIRAKAGEVVTT-IVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK-PGIE-A 102 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~Lgt-iaqNNp~~Q~~vle-~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~-~~~~-~ 102 (315)
+...+.|.+-.-|..|...|+. ++.++|+....-.+ ...+..|.+.+..|.+..|+..|+.||+.|+++-. +.+. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 88666654210011 13466777777567899999999999999997655 4444 4
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+.. --++.++..+.+....++..+..++..++..-+.....-.=..+++.|...+.+.+..+|+.++.+|..++....
T Consensus 101 y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 432 368899999999899999999999999987432110000001367788899999999999999999999987665
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.72 E-value=0.00016 Score=78.30 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=112.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh---
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG--- 99 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~--- 99 (315)
.++.+++.|.+++..+|..|+.+|+.++...+. . .+ ..+++.|+..+.+ ++..+|..|..+|+.++....+.
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~-~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QV-ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HH-HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HH-HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 467788889999999999999999999986544 1 11 1357788888765 46688999999999998765542
Q ss_pred ---HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 100 ---IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 100 ---~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
...+ -..-++.|...+. +++..++..|+.++..++...+...... -..+++.++..+.+++..+|+.|+.+|..
T Consensus 124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1112 2356788999998 5889999999999999986432211111 12467778888888899999999999999
Q ss_pred HHcCCc
Q 021251 176 LAREKA 181 (315)
Q Consensus 176 L~~~~~ 181 (315)
++....
T Consensus 202 l~~~~~ 207 (1230)
T 1u6g_C 202 LVMSCG 207 (1230)
T ss_dssp HTTTC-
T ss_pred HHHhcC
Confidence 987654
No 70
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.71 E-value=0.00027 Score=71.65 Aligned_cols=141 Identities=10% Similarity=0.043 Sum_probs=113.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
|+..+++++.+++-.+|..+--.+...+..+|+..-. .+..|.+-|.+ +++.+|.-|+.+||++.. + .
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~----~ 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNH-STQFVQGLALCTLGCMGS--S----E 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--H----H
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--H----H
Confidence 5677788889999999999999999999887764222 24456666664 688999999999999862 2 2
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+. ..-++.+..+|.+.++.+|++|+.++..+...+++... ++++.+..+|...|..++..|+.+|..++..++
T Consensus 139 ~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 139 MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 22 24678899999999999999999999999987665322 688889999999999999999999999988764
No 71
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.68 E-value=0.00025 Score=72.80 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=103.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH--HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCc---
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS--QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK--- 97 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~--Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~--- 97 (315)
.++.++..+.++++.||..|+|++|.++..-+.. ...+ -...++.|+..+.+ . ..+|..|.+||++++.+..
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~~~~~~~ 488 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQD-H-PKVATNCSWTIINLVEQLAEAT 488 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTS-C-HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhcc-C-hHHHHHHHHHHHHHHHhccccc
Confidence 4667778888899999999999999988642110 0001 11357788888864 3 8999999999999987632
Q ss_pred -hhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC--------------
Q 021251 98 -PGIEAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-------------- 160 (315)
Q Consensus 98 -~~~~~f~~~gGl~~L~~lL~s~~--~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-------------- 160 (315)
.....++ ..-++.|..++.+.+ ..+|..++.++..++...+........ .+++.++..+..
T Consensus 489 ~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 489 PSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred chhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhH
Confidence 1122222 234678888888644 789999999999999765543322222 255555555542
Q ss_pred -CChHHHHHHHHHHHHHHcCCc
Q 021251 161 -EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 161 -~d~~v~e~aL~aL~~L~~~~~ 181 (315)
....++..++.+|..+++...
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 134577888888888876654
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.66 E-value=0.007 Score=53.13 Aligned_cols=164 Identities=13% Similarity=0.166 Sum_probs=94.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
+.-++++|..+-=.||..|..+|.+++..-|..++..+ .+|+.+++.+.....-..-..|++-+++-+|....
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~-- 106 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK-- 106 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH--
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH--
Confidence 45566677666666777777777777777776655433 34555544433333323333444444443332211
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-----------------HH------HH---------hcCch
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-----------------SV------VD---------KLGFP 151 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~-----------------~~------l~---------~~g~v 151 (315)
+-+++|..-+.-.+++++.....+|..++..+|..- +. +. -.-++
T Consensus 107 ---~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfL 183 (253)
T 2db0_A 107 ---SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL 183 (253)
T ss_dssp ---HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGH
T ss_pred ---hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcch
Confidence 223444444444444444444444444443333210 00 00 11478
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCC
Q 021251 152 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLM 209 (315)
Q Consensus 152 ~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~ 209 (315)
+.|..||...|.-+|..|..+|..+++.++. |+..+...++..+.-
T Consensus 184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk------------lRkii~~kl~e~~D~ 229 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEALVHLATLNDK------------LRKVVIKRLEELNDT 229 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH------------HHHHHHHHHHHCCCS
T ss_pred HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH------------HHHHHHHHHHHhcCc
Confidence 8999999999999999999999999998743 466677777777653
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.65 E-value=0.00038 Score=71.54 Aligned_cols=152 Identities=11% Similarity=0.124 Sum_probs=110.2
Q ss_pred hHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHh--cCCHHHHHHcccCCC-CHHHHHHHHHHhhhhhcCCc
Q 021251 24 LAPLLGYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVME--ANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 24 l~~Ll~lL~s~--~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle--~G~l~~Ll~LL~sd~-~~~vr~kAl~ALS~LiR~~~ 97 (315)
++.|+.++.++ ++.+|..|..+++.++... +.. +.. ...++.+++.+..+. +..+|..|+.+++.++....
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555677788 8999999999999998752 321 222 245677788777642 68999999999999886433
Q ss_pred hhHH--HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHH
Q 021251 98 PGIE--AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 175 (315)
Q Consensus 98 ~~~~--~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~ 175 (315)
.... .+ ...-++.+...+.+++.+++..++.+|..++...+..........+++.+...+...+..++..++.++..
T Consensus 207 ~~~~~~~~-~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 207 ANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 2211 11 11246677778888899999999999999997655443333444678888888888899999999999988
Q ss_pred HHcC
Q 021251 176 LARE 179 (315)
Q Consensus 176 L~~~ 179 (315)
++..
T Consensus 286 l~~~ 289 (876)
T 1qgr_A 286 VCDE 289 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.58 E-value=0.0013 Score=66.88 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=114.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH
Q 021251 22 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 101 (315)
Q Consensus 22 Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~ 101 (315)
-|+..+++++.+++..+|..+--.+..++..+++.-..+ +..+.+=+. ++++-+|.-|+.+||++.. +.
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl~-~~n~~ir~lALr~L~~i~~--~e--- 142 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDLA-SRNPTFMGLALHCIANVGS--RE--- 142 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHHH-SCCHHHHHHHHHHHHHHCC--HH---
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhcC-CCCHHHHHHHHHHhhccCC--HH---
Confidence 368888999999999999999999999999887542211 233444444 3689999999999999842 22
Q ss_pred HHHHcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 102 AFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 102 ~f~~~gGl~~L~~lL--~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+. ..-++.+..+| .+.++-+|++|+.++..+...+|+. +...++++.+..+|...|+.++..|+.+|..++.+
T Consensus 143 -~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 143 -MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp -HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 22 24557788888 7889999999999999999866543 22358999999999999999999999999999988
Q ss_pred Ccc
Q 021251 180 KAD 182 (315)
Q Consensus 180 ~~~ 182 (315)
++.
T Consensus 218 ~~~ 220 (621)
T 2vgl_A 218 NPE 220 (621)
T ss_dssp CHH
T ss_pred ChH
Confidence 764
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.55 E-value=0.00078 Score=60.94 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=124.0
Q ss_pred HHHHhhcCCCChhHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 4 ELQEHVESIDMANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 4 ~L~dLveniDnA~d~~-~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
.|++++..+|-.-... --..++.++.++.+.|..|--+|..||+++..+.|-.-+.+.+. +..|..++. +.+.-.+
T Consensus 56 ~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl--~~aL~dlik-~~~~il~ 132 (265)
T 3b2a_A 56 ALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLE-SPDDMMR 132 (265)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH--HHHHHHHTT-SCCHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHHhc-CCCchHH
Confidence 3455555543222211 12368999999999999999999999999999988777777765 667888877 4688899
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 162 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d 162 (315)
.-|+-.++.+ +--... . .-+..+.+++.|.+..+|.-+..++.++.... .+...+ .+++.-+-.+|+++|
T Consensus 133 ~eaae~Lgkl-kv~~~~-~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-~D~~i~--~~I~~eI~elL~~eD 202 (265)
T 3b2a_A 133 IETIDVLSKL-QPLEDS-K-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-ADSGHL--TLILDEIPSLLQNDN 202 (265)
T ss_dssp HHHHHHHHHC-CBSCCC-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-SSCCCG--GGTTTTHHHHHTCSC
T ss_pred HHHHHHhCcC-Ccccch-H-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-CCHHHH--HHHHHHHHHHHcCCC
Confidence 9999999988 211111 1 34567889999999999999999999998632 222221 256677889999999
Q ss_pred hHHHHHHHHHHHHHHcCCc
Q 021251 163 PDVREAALRGLLELAREKA 181 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~~~ 181 (315)
+.+++.|+.+|..+.+..-
T Consensus 203 ~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 203 EFIVELALDVLEKALSFPL 221 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 9999999999999988754
No 76
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.54 E-value=0.00066 Score=73.43 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=128.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
|+.|+..+.+.+..+|..++.++|.++...| ...+|.|.+.+.+ .+..+|..++.++..++.+.+.....+
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--------~~l~p~l~~~l~~-~~~~~R~~~~~~l~~~~~~~~~~~~~~ 1003 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1003 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccCchhhHHH
Confidence 3444455555678899999999999999876 3578888888875 578899999999999988776554433
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC------------------ChHH
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE------------------DPDV 165 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~------------------d~~v 165 (315)
+. .-++.++..|+.++..+|+.|+.+|..++...+........ .+++.|...+... ..++
T Consensus 1004 l~-~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~-~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~ 1081 (1230)
T 1u6g_C 1004 LK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1081 (1230)
T ss_dssp HH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred HH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHH-HHHHHHHHHhcccHHhheeeccCCcccccCCcHHH
Confidence 32 22355667788899999999999999999877654332222 3677776665432 2389
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021251 166 REAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNE 234 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~ 234 (315)
|+.|..++..|...+...+ .+.+.+.+=+..+.. | .|.+-+|-.++..+...
T Consensus 1082 rk~a~~~~~~ll~~~~~~i---------~~~~~~~~~~~gl~d----~----~di~~~~~~~l~~l~~~ 1133 (1230)
T 1u6g_C 1082 RKAAFECMYTLLDSCLDRL---------DIFEFLNHVEDGLKD----H----YDIKMLTFLMLVRLSTL 1133 (1230)
T ss_dssp HHHHHHHHHHHHHSSCSSS---------CHHHHHHHHHHTTSS----C----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC---------CHHHHHHHHHcccCc----h----HHHHHHHHHHHHHHHhc
Confidence 9999999999998875443 134455554444442 2 35677776666655543
No 77
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.51 E-value=0.0068 Score=57.33 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=121.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
.-++.-|.+.+..-+.+|..-|..+.|..+..-..|++.+|+..|+.+... .+-..+.-++.|+.++.- +..+...++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchh
Confidence 445666667778888999999999777667777889999999999999876 478999999999999875 455666666
Q ss_pred H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--------cC--chHHHHHhhC---CCChHHHHHHH
Q 021251 105 L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--------LG--FPRLMLHLAS---SEDPDVREAAL 170 (315)
Q Consensus 105 ~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--------~g--~v~~Lv~LL~---s~d~~v~e~aL 170 (315)
. ...+.-|..++.+.+..+.+.|+.+|-.++...+.....+.+ .| ....|+.+|. +.|.+++..|+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 4 346788888899988999999999999998766555433332 22 4778999997 68999999998
Q ss_pred HHHHHHHcCCc
Q 021251 171 RGLLELAREKA 181 (315)
Q Consensus 171 ~aL~~L~~~~~ 181 (315)
..|-.+...-+
T Consensus 279 tLIN~lL~~ap 289 (339)
T 3dad_A 279 TLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHhcCC
Confidence 77766554443
No 78
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0039 Score=56.36 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=111.5
Q ss_pred hHHHHHhhcCCCC---h-hHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHH-----HHHHHHhcCCHHHHHH
Q 021251 2 LDELQEHVESIDM---A-NDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPR-----SQQLVMEANGLEPLLS 71 (315)
Q Consensus 2 Le~L~dLveniDn---A-~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~-----~Q~~vle~G~l~~Ll~ 71 (315)
+|+|..++++... . ..+...+.+..++ +.+...|..+...|+.++..++..-.. ......-...++.|+.
T Consensus 30 le~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lve 109 (278)
T 4ffb_C 30 YKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVE 109 (278)
T ss_dssp HHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Confidence 4566666655321 1 1222345555554 678889999999999999988764211 1111122345777775
Q ss_pred c-ccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---hHHHHh
Q 021251 72 N-FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD---CSVVDK 147 (315)
Q Consensus 72 L-L~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~---~~~l~~ 147 (315)
- +. ++...++.+|+.++..++....+... .+..+...+++.+++++.-++..|..++...... .....
T Consensus 110 K~l~-~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l- 181 (278)
T 4ffb_C 110 KGLT-SSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL- 181 (278)
T ss_dssp HTSS-CCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-
T ss_pred HHhc-CccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-
Confidence 3 44 45788999999988887754333221 2356778889999999999999999888642111 11111
Q ss_pred cCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 148 LGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 148 ~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
..+++.+..++.+.+..||+.|..++..+...-
T Consensus 182 ~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 182 PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 135667888899999999999999999987643
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.46 E-value=0.00088 Score=68.15 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=59.1
Q ss_pred hHHHHHhh--cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 24 LAPLLGYL--KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 24 l~~Ll~lL--~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
++.+.++| .+.++.||..|+.++..+.+.+|.. +-..+.++.|.++|. |.+..|+..|+.++..++.+++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChH
Confidence 46677888 7889999999999999999988753 222488999999985 67999999999999999987754
No 80
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.27 E-value=0.0081 Score=59.34 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=115.2
Q ss_pred hHHHHHhhcCCCChhHHH--HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCH
Q 021251 2 LDELQEHVESIDMANDLH--SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV 79 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~--~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~ 79 (315)
.|.|++..+-++.|++=. ....+..++..- .++...+..|+..|.....+-|..|+.. +..++.|.. |.+.
T Consensus 7 ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcE-Ded~ 79 (507)
T 3u0r_A 7 VEELYRNYGILADATEQVGQHKDAYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCE-DEDV 79 (507)
T ss_dssp HHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHT-CSSH
T ss_pred HHHHHHHhhHhhhccccccccHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHh-cccH
Confidence 467777777776666431 112344555543 3579999999999999999999988764 566899976 5689
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC
Q 021251 80 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 159 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~ 159 (315)
.||+.|+-.|..+|++ .... .-..+|.++|++++..-..-+-..|..|+..++. +.+..+...+.
T Consensus 80 ~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~ 144 (507)
T 3u0r_A 80 SIRRQAIKELPQFATG--ENLP-----RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQIL 144 (507)
T ss_dssp HHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHc
Confidence 9999999999999998 2222 2457899999999876666667777777765433 23334444444
Q ss_pred CCChHHHHHHHHHHHHHHcCCcch
Q 021251 160 SEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 160 s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
+++..+||+++..|..-+..-+..
T Consensus 145 ~~~e~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 145 QGEDIVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp HSCHHHHHHHHHHHHHHGGGSCTT
T ss_pred ccchHHHHHHHHHHHHHHhhcchh
Confidence 468899999999998766654433
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.25 E-value=0.003 Score=57.98 Aligned_cols=159 Identities=21% Similarity=0.195 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc
Q 021251 33 NSHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 108 (315)
Q Consensus 33 s~~~~vR~~Aa~~LgtiaqN----Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 108 (315)
+.|..+-..+..+|..+..- +....++-. .-.+|.|+.-+. |..+.+|.++-..+-.++.-+++. .-
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKlG-d~k~~vR~~~r~il~~l~~v~~~~-------~v 168 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKTG-EAKDNMRTSVRDIVNVLSDVVGPL-------KM 168 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCHH-------HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHCCHH-------HH
Confidence 67888888888888776532 111111101 125788888875 456789888777665554322221 23
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch---HHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhh
Q 021251 109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP---RLMLHLASSEDPDVREAALRGLLELAREKADGSA 185 (315)
Q Consensus 109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v---~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~ 185 (315)
++.+...+++.+.+.+.-++..+.++...+... ....+ +.+..++...|..+|+.|++++..+..+.-..+.
T Consensus 169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 169 TPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566888999999999999999999998754333 23467 9999999999999999999999987655443333
Q ss_pred hhhhhhHHHHHHHHHHHHhh
Q 021251 186 IKLAEDNEKLKQLLGERIKG 205 (315)
Q Consensus 186 ~c~~~~~~~L~~~L~~~~~~ 205 (315)
.++++--..-+..|++|++.
T Consensus 244 k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 244 KAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp HHHCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhh
Confidence 32232223335566666553
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.10 E-value=0.006 Score=64.96 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=75.5
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSV 144 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~-lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~ 144 (315)
+..|+..+.++.+..||..|+.+|+-+.-+.+. .++-++. ++++.++.+|..|++++.-+..+++.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---- 645 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---- 645 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence 556777766677788888888888887655442 2333444 45678899999999999988876553
Q ss_pred HHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251 145 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
..++..|..+.+..+..|+..|+.+|+.+-......
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 235667888888899999999999999987665543
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.95 E-value=0.0027 Score=60.58 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=86.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHH
Q 021251 25 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 104 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 104 (315)
+++.++|.+.++-||..|+.++..+...+|+.- + +++..+-.++. +.+..|...|+.++..+.++...+...++
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d~~a~~kLv 215 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAAS-SDNIMVQYHALGLLYHVRKNDRLAVSKMI 215 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhchHHHHHHH
Confidence 445567788999999999999999999999753 2 58888888875 46889999999999998876653333222
Q ss_pred H---cCc-----------------------------HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 021251 105 L---ANG-----------------------------YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 152 (315)
Q Consensus 105 ~---~gG-----------------------------l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~ 152 (315)
. .+| ++.|..+|++.+.-+.-.|+.+|.+|..... ..+ ...+.
T Consensus 216 ~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~--~~a~~ 290 (355)
T 3tjz_B 216 SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KEL--APAVS 290 (355)
T ss_dssp HHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CCC
T ss_pred HHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHH--HHHHH
Confidence 1 122 1223333334445555555555544432111 111 12355
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhcc
Q 021251 153 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGIS 207 (315)
Q Consensus 153 ~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~ 207 (315)
.|..++.+.+..+|=.|++.|..++...|..+..| ...+.+.|...=+.|.
T Consensus 291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~ 341 (355)
T 3tjz_B 291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIA 341 (355)
T ss_dssp THHHHHHSSSSSSHHHHHHCC----------------------------------
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHH
Confidence 56667778888899999999999998888877777 4555555555544444
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.077 Score=46.59 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=103.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
+|.+..-++-.++.+|-.-..+++.++.+||..--.+ +.-+..++. +++..=|..|+.-|+.+--++..-.
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt-skd~~Dkl~aLnFi~alGen~~~yv--- 179 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS-SKNREDKLTALNFIEAMGENSFKYV--- 179 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS-CSSHHHHHHHHHHHHTCCTTTHHHH---
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc-CCChHHHHHHHHHHHHHhccCcccc---
Confidence 3444455566899999999999999999999875544 445778876 5788888999999999876544322
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
..-++-|..+|...+.-+|..|+..|.+|+.-++..+..+. .-++=+...+..++.++-.+|+.|+
T Consensus 180 --~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 180 --NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred --CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999988776554433 3445556667778877777776654
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.57 E-value=0.035 Score=52.85 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=105.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
+..+++++.+++..+|...--.+-+++...+ +.++ +...|.+=+.+ +++-+|-.|+.++|++.-. +- .+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~-~m-~~-- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---DVII---VTSSLTKDMTG-KEDSYRGPAVRALCQITDS-TM-LQ-- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---CGGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCT-TT-HH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---HHHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCH-HH-HH--
Confidence 4456788899999999988888877776522 2222 23444555554 6889999999999998532 21 12
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 104 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 104 ~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.-.+.+..+|.+.++-++.+|+.+..+|+...|+ .+ .+++..+-+++...++.++-+|+.+|..+..++
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 3456699999999999999999999999876544 33 279999999999999999999999999998765
No 86
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.00 E-value=0.17 Score=48.45 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=108.9
Q ss_pred CCChhHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCCH
Q 021251 12 IDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDV 79 (315)
Q Consensus 12 iDnA~d~~~~Ggl~~Ll~lL~s-----------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~~ 79 (315)
++.-..|+ .+|+..|+..|.. .+..++.....|+..+. |+..-.+.|+++ .++..|...+.+ ...
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s-~~~ 176 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AVP 176 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCT-TSH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCC-Cch
Confidence 45567887 7899999988841 24578888999998887 667777778877 577888888876 578
Q ss_pred HHHHHHHHHhhhhhcCCc-hh-HHHHH----------HcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcc-----
Q 021251 80 TVRTKALGAISSLIRHNK-PG-IEAFR----------LANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASD----- 141 (315)
Q Consensus 80 ~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~----- 141 (315)
.++..|+--|+.+|.-.. .+ ...++ +..-+..++..|.+ .+..++..+..+|..++...++.
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 256 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 256 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 888888888887665432 11 22222 23448889999987 67999999999999999865442
Q ss_pred -hHHHHhcCchHHHHHhhCCCChHHH
Q 021251 142 -CSVVDKLGFPRLMLHLASSEDPDVR 166 (315)
Q Consensus 142 -~~~l~~~g~v~~Lv~LL~s~d~~v~ 166 (315)
+..+...|+.+.+-.+=..++.++.
T Consensus 257 lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 257 IRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHCChHHHHHHHhcCCChhHH
Confidence 3456677888877764333454444
No 87
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.83 E-value=0.18 Score=44.78 Aligned_cols=144 Identities=20% Similarity=0.259 Sum_probs=98.8
Q ss_pred CCCChhHHHHcCChHHHHHhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCCC
Q 021251 11 SIDMANDLHSIGGLAPLLGYLKN----S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPD 78 (315)
Q Consensus 11 niDnA~d~~~~Ggl~~Ll~lL~s----~-------~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~~ 78 (315)
+++.-..| ..+|+..|+.+|.. . +..+......||..+. |+..--+.+++. +++..|...|.+ +.
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s-~~ 109 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AV 109 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCT-TS
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCC-CC
Confidence 45677788 57899999988753 1 4567888999998777 666677778776 578888888765 57
Q ss_pred HHHHHHHHHHhhhhhcCCc-hh-HHHH----------HHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcc----
Q 021251 79 VTVRTKALGAISSLIRHNK-PG-IEAF----------RLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASD---- 141 (315)
Q Consensus 79 ~~vr~kAl~ALS~LiR~~~-~~-~~~f----------~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~---- 141 (315)
..+|..|+--|+.+|--.. .+ ...+ .+..-+..+++.|.+ .+..++..+..+|..|+...++.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~ 189 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 189 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 8888888766665554322 12 2222 122356778888874 56899999999999999765432
Q ss_pred --hHHHHhcCchHHHHHh
Q 021251 142 --CSVVDKLGFPRLMLHL 157 (315)
Q Consensus 142 --~~~l~~~g~v~~Lv~L 157 (315)
+..+...|+.+.+-.+
T Consensus 190 ~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 190 HIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHCChHHHHHHH
Confidence 2455666776666544
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.78 E-value=0.091 Score=54.97 Aligned_cols=140 Identities=8% Similarity=-0.039 Sum_probs=90.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHH
Q 021251 32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA 111 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~ 111 (315)
.+.+-..|+.|++++|.++..-......++. .+++.|..+ .. .++.+|..++|+|+.+++...... .++ ..-++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~l-~~-~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPRI-SI-SNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGGS-CC-CSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhC-CC-CcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHH
Confidence 4567788999999999998753221001111 122323333 22 467899999999999876432222 333 367888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCc
Q 021251 112 LRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASSE--DPDVREAALRGLLELAREKA 181 (315)
Q Consensus 112 L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~ 181 (315)
|+..|++ ++++..|+.++..|+..... .+.. ..++..+..++... +...++.++.+++.++...+
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 8888865 78999999999999964321 1111 13444555566653 56789999999999987553
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.77 E-value=0.088 Score=56.13 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=73.1
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CS 143 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~-~~ 143 (315)
.++.++.+|..+.++.+|..|.+|++-++-+++. . ..+..|..+++..+..+++.|+.+|.-+....... ..
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~ 684 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNP 684 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccch
Confidence 5688888877778999999999999999877653 1 24557888889999999999999999998764433 11
Q ss_pred HHHhcCchHHHHHhhCC--CChHHHHHHHHHHHHHH
Q 021251 144 VVDKLGFPRLMLHLASS--EDPDVREAALRGLLELA 177 (315)
Q Consensus 144 ~l~~~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~ 177 (315)
.+. ++.++|...... .|...+--|.-+.+-+.
T Consensus 685 rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 685 QVA--DINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp THH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 221 344556665543 45555555555555553
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.67 E-value=0.061 Score=57.87 Aligned_cols=143 Identities=10% Similarity=-0.016 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC--CCCHH--HHHHHHHHhhhhhcCCchhHHHHHHcCcH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS--DPDVT--VRTKALGAISSLIRHNKPGIEAFRLANGY 109 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s--d~~~~--vr~kAl~ALS~LiR~~~~~~~~f~~~gGl 109 (315)
.+=..|+.|+|++|.++..-..-+..-.=..+++.|+.++.. ..+.. +|..++|.||..++--... ..|+ ..-+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L-~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL-RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHH-HHHH
Confidence 467899999999999998643222221222367788888753 11233 4446779999877632211 2232 2456
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHH----HHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLM----LHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~------~g~v~~L----v~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
..|...|..++++++..||+++.+|+.. .+..+.. ..+++.+ ...+..-+..-+..+..+++.+++.
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6788888888899999999999999974 2233332 1234443 3333445666778888999999988
Q ss_pred Cc
Q 021251 180 KA 181 (315)
Q Consensus 180 ~~ 181 (315)
.+
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.54 E-value=0.14 Score=53.78 Aligned_cols=139 Identities=9% Similarity=-0.053 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR 113 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~ 113 (315)
.+-..|+.|..++|.++..-.......+.. .++.+..+...+.++.||..|+|+|+.++....... .++ ..-++.|+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~-l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl~~l~ 552 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPR-LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAINLLV 552 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHH-HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHH-HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHHHHHH
Confidence 455689999999999987644321111111 233233332124578999999999999875322211 222 13456677
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhCC--CChHHHHHHHHHHHHHHcCCc
Q 021251 114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASS--EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g~v~~Lv~LL~s--~d~~v~e~aL~aL~~L~~~~~ 181 (315)
..|. ++++..|++++..|+.... ..+.. ..++..+..++.. -+...++.++.+++.++...+
T Consensus 553 ~~l~---~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 553 RGLN---SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHH---SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhC---hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 7772 7899999999999996432 22221 1456666777777 357899999999999987543
No 92
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.48 E-value=1 Score=42.40 Aligned_cols=164 Identities=15% Similarity=0.196 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc---HHHHHHhhcCCCHHHHHHHHHHH
Q 021251 55 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG---YAALRDALGSESVKFQRKALNLI 131 (315)
Q Consensus 55 ~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG---l~~L~~lL~s~~~kl~~kA~~lL 131 (315)
.+...++..+.+-.+.+.+.. ++-++...|+..+-.+...|+.....|+..+- +.-.-.+|.|++--.|+.++-+|
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 344445555555556665554 56788888888888877777776677776442 45566789999999999999999
Q ss_pred HHHhhcCCcchHHH----HhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc--chhhhhhhhhHHHHHHHHHHHHhh
Q 021251 132 QYLLNENASDCSVV----DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEKLKQLLGERIKG 205 (315)
Q Consensus 132 s~Ll~~~~~~~~~l----~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~--~~~~~c~~~~~~~L~~~L~~~~~~ 205 (315)
+.|+.. ..+...+ .+..-++.++.||++.+..+|-.|....--.+.... +.+..-+..-...|...|..-
T Consensus 234 gelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f--- 309 (341)
T 1upk_A 234 GELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF--- 309 (341)
T ss_dssp HHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT---
T ss_pred HHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC---
Confidence 999964 3443333 244678899999999999999999988877765332 223222233344444444432
Q ss_pred ccCCCh-hhHHHHHHHHHHHHH
Q 021251 206 ISLMSP-EDLGAAREERHLVDS 226 (315)
Q Consensus 206 i~~~~~-ed~~~~~eE~~~~~~ 226 (315)
.. +. || +.+.+|++++-+
T Consensus 310 -~~-d~~eD-eqF~dEK~~lI~ 328 (341)
T 1upk_A 310 -QN-DRTED-EQFNDEKTYLVK 328 (341)
T ss_dssp -TT-TC-CC-SHHHHHHHHHHH
T ss_pred -CC-CCcch-hhHHHHHHHHHH
Confidence 21 22 33 568999988733
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.95 Score=40.33 Aligned_cols=148 Identities=17% Similarity=0.120 Sum_probs=99.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HH-HHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh---H
Q 021251 27 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ--QL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG---I 100 (315)
Q Consensus 27 Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q--~~-vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~---~ 100 (315)
|-.-|.|.+=..|..|..-+..+.++++... +. +...+.+..++.-.-.|++..+..+|+-+|..++...... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5577889999999999999998888765432 11 1223444444443335789999999999999988754322 1
Q ss_pred HHH--HHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 101 EAF--RLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 101 ~~f--~~~gGl~~L~~-lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
..+ .-...++.|+. +|.+...+++..|..++..++...... . -+++.++..+.+.++.++..++..|..+.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 111 12234555554 578888999999998888877532211 1 13466777888999999999999999887
Q ss_pred cCC
Q 021251 178 REK 180 (315)
Q Consensus 178 ~~~ 180 (315)
...
T Consensus 168 ~~f 170 (278)
T 4ffb_C 168 AAF 170 (278)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 94
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.18 E-value=0.13 Score=54.39 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=47.7
Q ss_pred HHhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcC
Q 021251 28 LGYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 95 (315)
Q Consensus 28 l~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~ 95 (315)
+..|.++ ++-||.+|+|+||..+..-+ ...+ ...++.+++.|.+ ++..|+..|.+||.+++.+
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l-~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQL-IELMPILATFLQT-DEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHH-HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHH-HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Confidence 4456666 99999999999999987521 1122 2357778888764 5789999999999998874
No 95
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.05 E-value=0.15 Score=50.35 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=104.7
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHhhCCH----H-HHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHH---------
Q 021251 25 APLLGYLK-NSHANIRAKAGEVVTTIVQNNP----R-SQQLVMEANGLEPLLSNFASD--PDVTVRTKALG--------- 87 (315)
Q Consensus 25 ~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNNp----~-~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~--------- 87 (315)
+.|+..++ +....|-.-+..++-|+...++ . ..+.++..++ .++++.|... .|+++...--+
T Consensus 274 ~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~ 352 (480)
T 1ho8_A 274 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEY 352 (480)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34455564 3566677778888889988763 1 2233444445 5566766643 34444332111
Q ss_pred ------------HhhhhhcCCchhHH-HH--------HHcC--cHHHHHHhhcC----------CCHHHHHHHHHHHHHH
Q 021251 88 ------------AISSLIRHNKPGIE-AF--------RLAN--GYAALRDALGS----------ESVKFQRKALNLIQYL 134 (315)
Q Consensus 88 ------------ALS~LiR~~~~~~~-~f--------~~~g--Gl~~L~~lL~s----------~~~kl~~kA~~lLs~L 134 (315)
--|...+.+|.... .| .+.+ -+..|+.+|.+ .|+.+..-||+=|+.+
T Consensus 353 ~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef 432 (480)
T 1ho8_A 353 QELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV 432 (480)
T ss_dssp HTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence 11222333333321 22 2211 25678888873 4789999999999999
Q ss_pred hhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 135 LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 135 l~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
+...|..+.++.+.|+=..++.|+.++|.+|+-+||.|+..+..++
T Consensus 433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999887665
No 96
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.97 E-value=0.48 Score=41.94 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=86.8
Q ss_pred HHHHhcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHHH-cCcHHHHHHhhcCCCHHHHHH
Q 021251 58 QLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRK 126 (315)
Q Consensus 58 ~~vle~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~k 126 (315)
+.| ..+|+..|+.+|.. ..+.......+.+|.+++ +++.+.+.++. .+++..|...|.++..+++.-
T Consensus 38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 445 46788888887753 113456667788887776 55677777775 467899999999999999999
Q ss_pred HHHHHHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251 127 ALNLIQYLLNENA-SD-CSVVD----------KLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 127 A~~lLs~Ll~~~~-~~-~~~l~----------~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~ 181 (315)
++.+|..++.... .. ...+. +..-...+++.++. .+.+++-.++..+-.++...+
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence 9999999886543 23 22221 22345668888874 677888888888888887765
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.93 E-value=0.78 Score=48.85 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC----CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS----DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 109 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s----d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl 109 (315)
.+-..++.|++++|.++.......+.-+-...++.|+.+... ++..-++..+.|+++..++-.... ..++. .-+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHH-HHH
Confidence 566789999999999987543221111111234445554221 123345546889999776432221 23332 456
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cC----chHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 110 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LG----FPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~------~g----~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+.|+..|.+++++++..||+++..|+... +..+.. .. ++..+..++..-+.+-......+++.++..
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~---~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 77888888889999999999999999742 222220 12 333344455554555566777888887765
Q ss_pred Cc
Q 021251 180 KA 181 (315)
Q Consensus 180 ~~ 181 (315)
.+
T Consensus 620 ~~ 621 (1049)
T 3m1i_C 620 ER 621 (1049)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 98
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.70 E-value=0.49 Score=45.22 Aligned_cols=155 Identities=19% Similarity=0.253 Sum_probs=106.3
Q ss_pred cCCCChhHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-CCHHHHHHcccCCC
Q 021251 10 ESIDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDP 77 (315)
Q Consensus 10 eniDnA~d~~~~Ggl~~Ll~lL~s-----------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~-G~l~~Ll~LL~sd~ 77 (315)
+++++-..|. .+|+..|+.+|.. .+..+...+..||..+. |+..-.+.+++. +++..|...|.+ +
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s-~ 112 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-A 112 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCT-T
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCC-C
Confidence 3456777886 6899999988742 14578888999998877 566666777776 578888888765 5
Q ss_pred CHHHHHHHHHHhhhhhcCCc-hh-HHHH----------HHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcc---
Q 021251 78 DVTVRTKALGAISSLIRHNK-PG-IEAF----------RLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASD--- 141 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~-~~-~~~f----------~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~~~~--- 141 (315)
...++..++--|+.+|--.. .+ ...+ .+..-+..++..+. +.+..++..++.+|..|+...++.
T Consensus 113 ~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R 192 (386)
T 2bnx_A 113 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 192 (386)
T ss_dssp SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 77888887755555544322 12 2222 22335677888887 466899999999999999875542
Q ss_pred ---hHHHHhcCchHHHHHhhCCCChHHHH
Q 021251 142 ---CSVVDKLGFPRLMLHLASSEDPDVRE 167 (315)
Q Consensus 142 ---~~~l~~~g~v~~Lv~LL~s~d~~v~e 167 (315)
+..+...|+.+.+-.+=...+..+..
T Consensus 193 ~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 193 VHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 35677778888776665555555443
No 99
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.53 E-value=0.031 Score=55.19 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred CCHHHHHHcccC---------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021251 64 NGLEPLLSNFAS---------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 134 (315)
Q Consensus 64 G~l~~Ll~LL~s---------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L 134 (315)
..+..|+++|++ +.|+.+..-|.+=|+.++|++|.+...+-+.||=..++.+|.++|+.+|..|+.++..+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 367889999974 24678888899999999999999988887889999999999999999999999999988
Q ss_pred hhc
Q 021251 135 LNE 137 (315)
Q Consensus 135 l~~ 137 (315)
+..
T Consensus 475 m~~ 477 (480)
T 1ho8_A 475 IGY 477 (480)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 100
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.35 E-value=0.51 Score=49.70 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCC--H-----------HHHHHHHhcCCHHHHHHcccCC--CCHHHHHHHHHHhhhhhcCCc
Q 021251 33 NSHANIRAKAGEVVTTIVQNN--P-----------RSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 33 s~~~~vR~~Aa~~LgtiaqNN--p-----------~~Q~~vle~G~l~~Ll~LL~sd--~~~~vr~kAl~ALS~LiR~~~ 97 (315)
+++-..|..|..++|.++.+. + .. ..++..-+++ .|.+. ..+-+|..|+|+|+.++....
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l-~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV-VDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH-HHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccH-HHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence 456678899999999997532 1 11 1111111222 23322 278999999999999887643
Q ss_pred hhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-------c-chHHHHh--cCchHHHHHhhCCCC-----
Q 021251 98 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-------S-DCSVVDK--LGFPRLMLHLASSED----- 162 (315)
Q Consensus 98 ~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-------~-~~~~l~~--~g~v~~Lv~LL~s~d----- 162 (315)
+ .+. ...++.++..|.+++..++..|+++|..++.... . .+..+.. ..++..|..++....
T Consensus 491 ~---~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~ 566 (960)
T 1wa5_C 491 K---AQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK 566 (960)
T ss_dssp H---HHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred H---HHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence 2 222 3467888889998899999999999999986321 1 1222221 135556666766641
Q ss_pred hHHHHHHHHHHHHHHcC
Q 021251 163 PDVREAALRGLLELARE 179 (315)
Q Consensus 163 ~~v~e~aL~aL~~L~~~ 179 (315)
....+.++.+|..++..
T Consensus 567 ~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 567 LAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HTSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 11335666666666543
No 101
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.54 E-value=0.54 Score=49.05 Aligned_cols=135 Identities=11% Similarity=0.058 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcc---cCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHH
Q 021251 38 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF---ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 114 (315)
Q Consensus 38 vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL---~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~ 114 (315)
.|..+..++..++...+ ..++.. .++.+-..+ ..+.+-..+..|+|||++++.+.......++. ..++.+..
T Consensus 423 ~r~~~~~~L~~~~~~~~---~~~l~~-~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~ 497 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLG---AELLSN-LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHHHHHHHHT---HHHHHH-HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcc---HHHHHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHh
Confidence 46667777766664322 111111 112222233 23356788899999999999876542222222 12232222
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 115 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 115 lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
+.++++.++..++++++.+...-......+ ..+++.++..++. ..++.+|..+|..++.+...
T Consensus 498 -l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 498 -ISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp -SCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 234678999999999998875211111221 2678888888854 78999999999999987653
No 102
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.48 E-value=3.4 Score=39.31 Aligned_cols=122 Identities=19% Similarity=0.167 Sum_probs=89.4
Q ss_pred HHHHhcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHc-CcHHHHHHhhcCCCHHHHHH
Q 021251 58 QLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDALGSESVKFQRK 126 (315)
Q Consensus 58 ~~vle~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGl~~L~~lL~s~~~kl~~k 126 (315)
+.|. .+|+..|+.+|.. +.+.......+.+|.++. ++..+...++.+ .++..|+.+|.+..++++.-
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 4455 6788999888742 224566777788887776 556777777754 67899999999999999999
Q ss_pred HHHHHHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCc
Q 021251 127 ALNLIQYLLNENA-SD-CSVVD----------KLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 127 A~~lLs~Ll~~~~-~~-~~~l~----------~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~ 181 (315)
|+.+|..+|.... .. ...+. +..-...++..++. .+.+++-.++..+-.++...+
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 9999999987543 32 22221 22446778888887 678899888888888887765
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.79 E-value=0.076 Score=47.82 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH-----HHhh-CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 25 APLLGYLKNSHANIRAKAGEVVT-----TIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~Lg-----tiaq-NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
+.|..++++++..||..++.-+. .+++ .++.+|..+...-.. .++..+.+|++..||..++.+++
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~l~~-~~l~~l~~D~d~~VR~~aa~~l~-------- 171 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPP-GRLFRFMRDEDRQVRKLVAKRLP-------- 171 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCG-GGGGGTTTCSCHHHHHHHHHHSC--------
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCH-HHHHHHHcCCCHHHHHHHHHcCC--------
Confidence 45567778888888888886442 3333 367777777765333 34445566789999998888632
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 021251 99 GIEAFRLANGYAALRDALGSESVKFQRKALNL 130 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~l 130 (315)
.+.+..++++++..++..++..
T Consensus 172 ----------~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 172 ----------EESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp ----------GGGGGGSTTCSSHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCCCHHHHHHHHHh
Confidence 1345566777777777777653
No 104
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.52 E-value=0.18 Score=42.67 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=58.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 92 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~L 92 (315)
++..|.+-|++.++.++.+|..+|-++++| .+.++..|.....+..|++++....+..|+.|++..|-.-
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 455677778899999999999999999999 4778888888888888888887657889999988766553
No 105
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.16 E-value=2.2 Score=45.40 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchh-HHHHHHcCcHHHHHH
Q 021251 37 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRD 114 (315)
Q Consensus 37 ~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGl~~L~~ 114 (315)
..|..+..+|-.++...+. .++.. .++.|-+.+.+ ..+-..+..|+||++++....... ...++ ..-++.|..
T Consensus 428 ~~~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~ 502 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLD 502 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHH
Confidence 4566778888888765442 12211 12333333432 346678899999999998654332 12222 123344444
Q ss_pred hhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 115 ALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 115 lL~s-----~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
+... +.+.++..++|+++.+..-.....+.+. .+++.++..+.+++..++.+|..++..++.++.
T Consensus 503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3221 2345555688999876532111112222 466777778888899999999999999998654
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.14 E-value=0.5 Score=49.55 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHhh---CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251 34 SHANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA 110 (315)
Q Consensus 34 ~~~~vR~~Aa~~Lgtiaq---NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~ 110 (315)
+++.||..|+|+||..+. .+++. +. ..++.|+..+. +.|+..|.+|+..+++........++. .-+.
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~----l~-~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~ 587 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAY----IP-PAINLLVRGLN----SSMSAQATLGLKELCRDCQLQLKPYAD-PLLN 587 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----C----HH-HHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHH----HH-HHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhccccHH-HHHH
Confidence 489999999999998764 22211 11 24556666662 468999999999999876544433332 3455
Q ss_pred HHHHhhcC--CCHHHHHHHHHHHHHHhhcC
Q 021251 111 ALRDALGS--ESVKFQRKALNLIQYLLNEN 138 (315)
Q Consensus 111 ~L~~lL~s--~~~kl~~kA~~lLs~Ll~~~ 138 (315)
.+..++.+ -+.+.+..+..++..++..-
T Consensus 588 ~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 588 ACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 66677776 35789999999999988643
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.01 E-value=5.8 Score=37.68 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=86.6
Q ss_pred HHHHhcCCHHHHHHcccC----------CCCHHHHHHHHHHhhhhhcCCchhHHHHHHc-CcHHHHHHhhcCCCHHHHHH
Q 021251 58 QLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDALGSESVKFQRK 126 (315)
Q Consensus 58 ~~vle~G~l~~Ll~LL~s----------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGl~~L~~lL~s~~~kl~~k 126 (315)
+.|. .+|+..|+..|.. ..+.......+.+|.+++ ++..+...++.+ +++..|..+|.++..+++..
T Consensus 42 ~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~ 119 (386)
T 2bnx_A 42 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 119 (386)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 3343 5778778777642 114566777888888776 456667766654 68999999999999999999
Q ss_pred HHHHHHHHhhcCC-cc-hHHH----------HhcCchHHHHHhhC-CCChHHHHHHHHHHHHHHcCCcc
Q 021251 127 ALNLIQYLLNENA-SD-CSVV----------DKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 127 A~~lLs~Ll~~~~-~~-~~~l----------~~~g~v~~Lv~LL~-s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
++.+|..+|.... .. ...+ .+..-...+|..+. +.+.+++..++..+-.++...+.
T Consensus 120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence 9999999887543 22 2211 12234556888777 46788999999888888877663
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.00 E-value=4.8 Score=36.07 Aligned_cols=150 Identities=12% Similarity=0.021 Sum_probs=98.4
Q ss_pred hhHHHHcCChHHH---H-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhh
Q 021251 15 ANDLHSIGGLAPL---L-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS 90 (315)
Q Consensus 15 A~d~~~~Ggl~~L---l-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS 90 (315)
|+.+.+....+.+ . .+.+++..++|..|+.+||.+ ...+ ..++.+-..+..|..=.||.-+..++.
T Consensus 60 a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~ 129 (240)
T 3l9t_A 60 ALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFD 129 (240)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHH
Confidence 4444444334433 3 455778889999999999877 3111 135555555666777889999988998
Q ss_pred hhhc-CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHH
Q 021251 91 SLIR-HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA 169 (315)
Q Consensus 91 ~LiR-~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~a 169 (315)
.++. -++. --++.+...+.+++..+|+-|...+.--+.. +..+. .-.-+++.|-.+...++..||..+
T Consensus 130 ~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSV 198 (240)
T 3l9t_A 130 EFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSV 198 (240)
T ss_dssp HHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHH
T ss_pred HHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHH
Confidence 8874 2221 1456788889999999999887665432211 11100 000134555556666788899999
Q ss_pred HHHHHHHHcCCcchhh
Q 021251 170 LRGLLELAREKADGSA 185 (315)
Q Consensus 170 L~aL~~L~~~~~~~~~ 185 (315)
.++|-.+++++|..+.
T Consensus 199 an~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 199 GNALRDISKKFPDLVK 214 (240)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhCHHHHH
Confidence 9999999999997763
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.97 E-value=6.8 Score=35.29 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=104.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 103 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f 103 (315)
++.++.+-.+.+.+||...+..|+.++...++..- ..++.|..++. +.++.|.++++-+.+++-| ...+.+
T Consensus 55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~-d~d~~V~K~~I~~~~~iY~---~~l~~i 125 (257)
T 3gs3_A 55 LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLR-DNSAQVIKRVIQACGSIYK---NGLQYL 125 (257)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 55666665668999999999999998876554322 34677888876 5689999999999888743 233333
Q ss_pred HHcCc--------------H-HHHHHhhcCCCHHHHHHHHHHHHHHh--hcCC--c--------------------chHH
Q 021251 104 RLANG--------------Y-AALRDALGSESVKFQRKALNLIQYLL--NENA--S--------------------DCSV 144 (315)
Q Consensus 104 ~~~gG--------------l-~~L~~lL~s~~~kl~~kA~~lLs~Ll--~~~~--~--------------------~~~~ 144 (315)
...++ + ..++..+.+.+.-+|..|.-++..+. +..+ . ....
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~ 205 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREK 205 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHH
Confidence 33322 1 24556678888999999998888765 2211 0 0123
Q ss_pred HHhc--CchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCcchh
Q 021251 145 VDKL--GFPRLMLHLASSE--DPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 145 l~~~--g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
+... +++..|+..+.+. +......+++.|..|++..|.+.
T Consensus 206 Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 206 LQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 3322 6778888877765 33456788899999999888765
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.86 E-value=0.83 Score=41.57 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=93.8
Q ss_pred HHHHHHHHHH---HHhhCCHHHHHHHHhcCCHHHHHHcccC---C-CCHHHHHHHHHHhhhhhcCCchhHHHH-HHcCcH
Q 021251 38 IRAKAGEVVT---TIVQNNPRSQQLVMEANGLEPLLSNFAS---D-PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGY 109 (315)
Q Consensus 38 vR~~Aa~~Lg---tiaqNNp~~Q~~vle~G~l~~Ll~LL~s---d-~~~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGl 109 (315)
.-.+.|.+++ .+|+ +|+.+..|++....-.|.-.|.. + +-+-+|..+++-|+.++....+..-.| +...-+
T Consensus 69 ~SnRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEii 147 (268)
T 2fv2_A 69 QSNRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEII 147 (268)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHH
T ss_pred HHhHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHH
Confidence 3344555554 4554 78899999999765444333332 1 236899999999999998766555455 477889
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc------hHHHHhc-CchHHHHH-hhCCCChHHHHHHHHHHHHHHcC
Q 021251 110 AALRDALGSESVKFQRKALNLIQYLLNENASD------CSVVDKL-GFPRLMLH-LASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 110 ~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~------~~~l~~~-g~v~~Lv~-LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+...+.|...+.--|..|.|.+..++.++.-. .+.+..- .++..+|. +...++.-+..++.++-..|+..
T Consensus 148 plCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 148 PLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998643211 1122111 22333333 34456677777777777666554
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.39 E-value=0.17 Score=45.49 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=61.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH-----HHhh-CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 25 APLLGYLKNSHANIRAKAGEVVT-----TIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 25 ~~Ll~lL~s~~~~vR~~Aa~~Lg-----tiaq-NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
..+..++++++..||..|+..++ .+.+ .++.++..+...=..+.|..+ .+|++..||..++..+.
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L-~~D~d~~VR~~aA~~l~-------- 147 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQM-AADRDYLVRAYVVQRIP-------- 147 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGG-TTCSSHHHHHHHHHHSC--------
T ss_pred HHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHH-HcCCCHHHHHHHHHhcC--------
Confidence 34557889999999999997553 3333 478888887775333444444 56789999999887431
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 021251 99 GIEAFRLANGYAALRDALGSESVKFQRKALNL 130 (315)
Q Consensus 99 ~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~l 130 (315)
.+.+..++++++..++..++..
T Consensus 148 ----------~~~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 148 ----------PGRLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp ----------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCCCHHHHHHHHHc
Confidence 1245677788899999988874
No 112
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.04 E-value=0.41 Score=39.76 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=60.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR 94 (315)
++..|.+-|++.++.++.+|..++-++++| .+.++..|.....+..|++++.. .++..|+.|.+..|-.-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999 57888889888999999999863 2578999998877766443
No 113
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.88 E-value=0.72 Score=38.83 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=68.2
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS- 160 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s- 160 (315)
....-.|+.+++..+.+.+ ..+..|..-|++.++.++..|+.+|-.++.+. +.....+.+..|+..|+.++..
T Consensus 33 w~~~leicD~I~~~~~~~k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~ 107 (163)
T 1x5b_A 33 WSLIMDICDKVGSTPNGAK-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK 107 (163)
T ss_dssp HHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC
Confidence 4445678888877654332 34566888889999999999999999999864 4455566777888888888876
Q ss_pred CChHHHHHHHHHHHHHHcC
Q 021251 161 EDPDVREAALRGLLELARE 179 (315)
Q Consensus 161 ~d~~v~e~aL~aL~~L~~~ 179 (315)
.+..|+++++..|..-+..
T Consensus 108 ~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 108 AHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6778999988877665543
No 114
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.70 E-value=1.1 Score=48.16 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=86.0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 21 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
.+.++.++..+......||..|..++..+++. ||.. + ...+|.|+..+.+...=..++.|+..|..|+...+ .
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~-~ 167 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK-D 167 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH-H
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH-H
Confidence 34567777777777889999999999988886 4543 2 44689999999765556889999999999997653 3
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
+-...--..+|++..++....+.++..|...+..+|.
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 3333345688999999999999999999988888875
No 115
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.60 E-value=2.3 Score=39.56 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=88.1
Q ss_pred HHHHHhhcCC------CHHHHHHHHHHHHHHhhCCHHHHHHHHh--cCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 25 APLLGYLKNS------HANIRAKAGEVVTTIVQNNPRSQQLVME--ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 25 ~~Ll~lL~s~------~~~vR~~Aa~~LgtiaqNNp~~Q~~vle--~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
..+..+|+++ +..--..|..-|-.++-+-. .=-.+++ ...+..|+ +... .++.++.+|...|++..|||
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~-~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYK-HGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHH-HHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHH-hhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHccC
Confidence 3445566554 22234456666655554432 2233443 23344444 2233 57899999999999999999
Q ss_pred chhHHHHHHcC-c-----HHHHHHhhcC---CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC--ChHH
Q 021251 97 KPGIEAFRLAN-G-----YAALRDALGS---ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDV 165 (315)
Q Consensus 97 ~~~~~~f~~~g-G-----l~~L~~lL~s---~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~--d~~v 165 (315)
|++.+.+.+.- . ++-|..++.. ....++.+-+.+|..|+...... .. ..+..|..++... +.++
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F----~~-~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL----PI-YSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----hh-ccHHHHHHHHccCCCCHHH
Confidence 99987665421 1 1223333322 24577778888999998764222 12 2346677766666 9999
Q ss_pred HHHHHHHHHHHH
Q 021251 166 REAALRGLLELA 177 (315)
Q Consensus 166 ~e~aL~aL~~L~ 177 (315)
+.+++..+..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999888765
No 116
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=90.58 E-value=1.6 Score=39.69 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=98.0
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCC
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDP 77 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~-----~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~ 77 (315)
-|+-...+.|....|.+....-.|..+|+.. .+.+|-.+..+||.++++ ++++...+++.+++|..++.++..
T Consensus 79 LlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G- 157 (268)
T 2fv2_A 79 LLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG- 157 (268)
T ss_dssp HHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-
T ss_pred HHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-
Confidence 4566777888899999998666666888653 367999999999999984 788999999999999999999875
Q ss_pred CHHHHHHHHHHhhhhhcCCchhHH-------HHHH-cCcHHHH-HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 021251 78 DVTVRTKALGAISSLIRHNKPGIE-------AFRL-ANGYAAL-RDALGSESVKFQRKALNLIQYLLNENASDCSVV 145 (315)
Q Consensus 78 ~~~vr~kAl~ALS~LiR~~~~~~~-------~f~~-~gGl~~L-~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l 145 (315)
++--|+-|+|-+..+.-+. .+.. .|.. ...+.-+ ..+...++.++.+..+..-..|.+ ++..++.+
T Consensus 158 selSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL 232 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREAL 232 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 6788999999888876543 2222 2221 1122222 233345678888877777666664 34444333
No 117
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.53 E-value=0.32 Score=41.41 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=59.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR 94 (315)
++..|.+-|++.++.++.+|..++-++++|. +.++..|.+...+..|++++.. ..+..|+.|++..|-.-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3556777888999999999999999999995 6788888888889999999862 2578999999887776543
No 118
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.36 E-value=0.51 Score=40.13 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=79.0
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCS 143 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~ 143 (315)
.+..+|.-..++...+.-...+-.|+-+++..+.+.+ ..+..|..-|++.++.++..|+.+|-.++.+. .....
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k-----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3555555544432222224556688888887654332 34567888899999999999999999999864 44556
Q ss_pred HHHhcCchHHHHHhhCC------CChHHHHHHHHHHHHHHcCC
Q 021251 144 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 144 ~l~~~g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+.+..|+..|+.++.. .+..|+++++..|..-+...
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 77778899999999863 46789999998887766543
No 119
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.31 E-value=12 Score=39.82 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=94.3
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHH--HHHHc
Q 021251 29 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE--AFRLA 106 (315)
Q Consensus 29 ~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~--~f~~~ 106 (315)
.++.+.++.++..+..+++....--|- ..++..+.++.+.++|.. +.+|..|+-+|..+++....... .++..
T Consensus 200 ~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~ 274 (980)
T 3ibv_A 200 AYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNI 274 (980)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 334457889999999999999875442 566777888888888753 78999999999998876543222 22222
Q ss_pred CcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhc------CCc-----chHHH-Hh-cCchHHHHHhhCCCChHHHHHHHH
Q 021251 107 NGYAALRDALG--SESVKFQRKALNLIQYLLNE------NAS-----DCSVV-DK-LGFPRLMLHLASSEDPDVREAALR 171 (315)
Q Consensus 107 gGl~~L~~lL~--s~~~kl~~kA~~lLs~Ll~~------~~~-----~~~~l-~~-~g~v~~Lv~LL~s~d~~v~e~aL~ 171 (315)
=.+..++..+. .+|..+.++.+.++..+... .+. .+... .. .++++.++.++.+++.++-..++.
T Consensus 275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~ 354 (980)
T 3ibv_A 275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFP 354 (980)
T ss_dssp HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHH
T ss_pred HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 12222233333 46777777777776544321 110 01111 11 268999999999999999988888
Q ss_pred HHHHHHc
Q 021251 172 GLLELAR 178 (315)
Q Consensus 172 aL~~L~~ 178 (315)
.+..+..
T Consensus 355 Fw~~~l~ 361 (980)
T 3ibv_A 355 FLSDLLV 361 (980)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777664
No 120
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.24 E-value=0.54 Score=39.00 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=71.7
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS- 160 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s- 160 (315)
....-.|+-+++..+.+.+ .++..|..-|++.++.++..|+.+|-.++.+. +.....+.+..|+..|+.++..
T Consensus 19 w~~~leicD~I~~~~~~~k-----~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k 93 (148)
T 1mhq_A 19 WSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK 93 (148)
T ss_dssp HHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence 3455678888877654322 34667888889999999999999999999864 4455777788999999999974
Q ss_pred -----CChHHHHHHHHHHHHHHcCC
Q 021251 161 -----EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 161 -----~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+..|+++++..+..-+...
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 94 YLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 47889999998887766554
No 121
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.18 E-value=13 Score=35.44 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=104.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
-++.++.+-..++.+||...+..|+.++...++.. ...++.|..+|. +.++.|..+++-+.+++- +.+++.
T Consensus 64 fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~-d~d~~V~K~~I~~~tslY---pl~f~~ 134 (386)
T 3o2t_A 64 FLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR-DENVNVVKKAILTMTQLY---KVALQW 134 (386)
T ss_dssp GHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH---HHHHHH
Confidence 47778888778899999999999998887544432 234667788876 568999999999998874 334444
Q ss_pred HHHcCc--------H-------HHHHHhhcCCCHHHHHHHHHHHHHHhh--c----CCc---------------------
Q 021251 103 FRLANG--------Y-------AALRDALGSESVKFQRKALNLIQYLLN--E----NAS--------------------- 140 (315)
Q Consensus 103 f~~~gG--------l-------~~L~~lL~s~~~kl~~kA~~lLs~Ll~--~----~~~--------------------- 140 (315)
+...++ | ..++..+.+.+.-+|..|.-++..++. . ++.
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L 214 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI 214 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence 444333 2 235556778889999999988887652 1 100
Q ss_pred chHHHHhc--CchHHHHHhhCCC--ChHHHHHHHHHHHHHHcCCcchh
Q 021251 141 DCSVVDKL--GFPRLMLHLASSE--DPDVREAALRGLLELAREKADGS 184 (315)
Q Consensus 141 ~~~~l~~~--g~v~~Lv~LL~s~--d~~v~e~aL~aL~~L~~~~~~~~ 184 (315)
....+... +++..|+..+..+ +......+++.|..|++..+.+.
T Consensus 215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~ 262 (386)
T 3o2t_A 215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM 262 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH
Confidence 01223222 6788888888873 34455678899999998888665
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.49 E-value=0.36 Score=42.77 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=59.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqN-Np~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
++..|.+-|++.++.++.+|..+|.++++| .+.++..|.....+..|.+++...++..|+.|++..|-.-.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 355677788899999999999999999999 46678888888888888888877778899999988777654
No 123
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=88.84 E-value=0.59 Score=39.05 Aligned_cols=70 Identities=26% Similarity=0.246 Sum_probs=56.2
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHH-HHHccc--CCCCHHHHHHHHHHhhhh
Q 021251 23 GLAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFA--SDPDVTVRTKALGAISSL 92 (315)
Q Consensus 23 gl~~Ll~lL~-s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~-Ll~LL~--sd~~~~vr~kAl~ALS~L 92 (315)
++..|.+-|+ +.++.++.+|..++-++++|. +.++..|.+...+.. |++++. .+++..|+.|++..|-.-
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 3456677776 489999999999999999996 888888888888887 788874 235678999988777654
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.74 E-value=0.83 Score=37.41 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=71.0
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHHhcCchHHHHHhhCCC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASSE 161 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~-~~~~~l~~~g~v~~Lv~LL~s~ 161 (315)
...+..||-+++..+.+.+ ..+..|..-|.+.++.++..|+.+|..++.+.. .....+.+..++..++.++...
T Consensus 23 w~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 23 WGLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG 97 (140)
T ss_dssp HHHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence 4567778888887664432 346678888899999999999999999987643 3345566667888888888778
Q ss_pred ChHHHHHHHHHHHHHHcC
Q 021251 162 DPDVREAALRGLLELARE 179 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~ 179 (315)
+..|+++++..+..-+..
T Consensus 98 ~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999988876654
No 125
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.48 E-value=0.77 Score=38.17 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=59.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccC-----CCCHHHHHHHHHHhhhhhc
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~s-----d~~~~vr~kAl~ALS~LiR 94 (315)
++..|.+-|++.++.++.+|..++-++++|. +.++..|.....+..|++++.. .++..|+.|.+..|-.-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999995 6778888888889999999863 2578999999888877554
No 126
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.46 E-value=4.9 Score=43.06 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=97.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC--chh
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN--KPG 99 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~Lgtiaq--NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~--~~~ 99 (315)
+|.+..++-...++|+..|..++..+|+ .|..+ ...+|.||+.+.+ ++ + ..+++..||+-+--. ...
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~-p~-~-~~~~~~~l~~~tfv~~v~~~ 247 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIAD-PT-E-VPETVHLLGATTFVAEVTPA 247 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHC-TT-H-HHHHHHHHTTCCCCSCCCHH
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcC-hh-h-hHHHHHHhhcCeeEeeecch
Confidence 5555567777899999999999988876 34433 2468999999876 33 3 467788898854222 111
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC--CcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHH
Q 021251 100 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN--ASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLEL 176 (315)
Q Consensus 100 ~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~--~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L 176 (315)
.-++ -+|+|.+.|......++++++-.+.+++.-- |.....|.- .++|.|-..... .++++|+.|-+|+..|
T Consensus 248 ~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 248 TLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 1222 4678888888889999999999999999743 322222321 456666665555 7899999998888888
Q ss_pred H
Q 021251 177 A 177 (315)
Q Consensus 177 ~ 177 (315)
.
T Consensus 323 ~ 323 (986)
T 2iw3_A 323 R 323 (986)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.21 E-value=7.6 Score=38.35 Aligned_cols=187 Identities=10% Similarity=0.065 Sum_probs=102.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 102 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~ 102 (315)
++..++.+++.++..||.+|..-|-.+|.+ .. +-+ ....|.+||.++ +.......-.+|-.+.+.++.+
T Consensus 66 Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~----i~k--iaDvL~QlLqtd-d~~E~~~V~~sL~sllk~Dpk~--- 134 (507)
T 3u0r_A 66 AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN----LPR--VADILTQLLQTD-DSAEFNLVNNALLSIFKMDAKG--- 134 (507)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC----HHH--HHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh----hhh--HHHHHHHHHhcc-chHHHHHHHHHHHHHHhcChHH---
Confidence 577889999999999999999999999986 22 222 356789999875 5566666667777777665432
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhCCCCh-HHHHHHHHHHHHHHcCC
Q 021251 103 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSEDP-DVREAALRGLLELAREK 180 (315)
Q Consensus 103 f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~-~~~~~~~l~~~g~v~~Lv~LL~s~d~-~v~e~aL~aL~~L~~~~ 180 (315)
-+..|..-+.+.+..+|.+++..|+.=+.. .+.....-.+.=++..+-.+|..-.. ++ ...+..| +..
T Consensus 135 -----tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF-~L~m~lL----~~l 204 (507)
T 3u0r_A 135 -----TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEF-VLFMKIL----SGL 204 (507)
T ss_dssp -----HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHH-HHHHHHH----HTS
T ss_pred -----HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHH-HHHHHHH----Hhc
Confidence 222222333334789999999888754432 11111111222233444445532111 11 1222222 222
Q ss_pred cch-hhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCC
Q 021251 181 ADG-SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEP 235 (315)
Q Consensus 181 ~~~-~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~ 235 (315)
.-+ .. ....+|...+.+..+.-...+..|.+.+..-+..+.. --.+|+..
T Consensus 205 kl~~t~----~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~-ALP~FS~~ 255 (507)
T 3u0r_A 205 KSLQTV----SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQ-AVPLFSKN 255 (507)
T ss_dssp GGGSSH----HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHH-HGGGCBTT
T ss_pred ccccCc----hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHH-HHHHhccC
Confidence 111 11 1135667777776655555565564444444433222 34555543
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=87.83 E-value=0.53 Score=41.34 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=57.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
++..|.+-|.+.++.++.+|..+|.++++|. +.++..|.+...+..|+.++.+.++..|+.|++..|-.-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3445667788999999999999999999996 6688888887888888888876678899998886655543
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.81 E-value=2 Score=35.67 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=80.7
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chH
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCS 143 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~ 143 (315)
.+..+|.-..++...+.-..++..||-+++..+.+.+ ..+..|..-|++.++.++..|+.+|-.++.+... ...
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3455555544432222235577888888887664332 2456788888999999999999999999976543 446
Q ss_pred HHHhcCchHHHHHhhCC------CChHHHHHHHHHHHHHHcCC
Q 021251 144 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 144 ~l~~~g~v~~Lv~LL~s------~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+.+..|+..|+.++.. .+..|+++++..+..-+...
T Consensus 86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 67777899999999963 57889999999998877655
No 130
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.39 E-value=3.2 Score=44.54 Aligned_cols=112 Identities=8% Similarity=0.007 Sum_probs=70.7
Q ss_pred HHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchh-HHHHHHcCcHHHHHHhhcC---CCH--HHHHHHHHHHHHHhhcCC
Q 021251 67 EPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGS---ESV--KFQRKALNLIQYLLNENA 139 (315)
Q Consensus 67 ~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGl~~L~~lL~s---~~~--kl~~kA~~lLs~Ll~~~~ 139 (315)
+.|-+.+.+ +.+=..+..++||++++..+-.+. ...++ ...++.|+.++.. .+. .++.-++|+++....--.
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 334444443 246788999999999999776543 33333 3567778887753 234 444557788876543111
Q ss_pred cchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCc
Q 021251 140 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 140 ~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~ 181 (315)
...+.+. .++..|...+..++..+++.|..++..|++++.
T Consensus 533 ~~~~~L~--~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 533 AHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 1111111 345556666666778899999999999998764
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.50 E-value=1.4 Score=38.87 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=75.3
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHH
Q 021251 66 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSV 144 (315)
Q Consensus 66 l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~-~~~~ 144 (315)
+..+|.-..++...+.-..++..|+-+++..+.+.+ ..+..|..-|++.++.++..|+.+|..++.+-.. ....
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 444555544432222224566778888876544322 3456788888999999999999999999976433 4455
Q ss_pred HHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCC
Q 021251 145 VDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREK 180 (315)
Q Consensus 145 l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~ 180 (315)
+.+..++..|+.++.. .+..|+++++..|...+...
T Consensus 84 ias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 84 VANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 6666777788877754 56789999988887766544
No 132
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.38 E-value=10 Score=34.28 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=95.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhc-----CCchhH
Q 021251 26 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-----HNKPGI 100 (315)
Q Consensus 26 ~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR-----~~~~~~ 100 (315)
-+...|-+.+-.-|..|...|......++..-...+ +.+-+-+.+--.+++.++..+++-.|..++. ++.-.
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l--Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~- 126 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNS--DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS- 126 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch-
Confidence 455666677888888899999888776664322222 2222222211124688999999999998742 11111
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCC
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.....--+|.|+.=+.....++|..+-.++..+..-.+ -..+.+.++.-+.+.+...|+.++..+.++....
T Consensus 127 -~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 -QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp -HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 11112246888888888889999999988877764222 2246667888888999999999999998886543
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.00 E-value=0.82 Score=37.44 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=56.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 23 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 23 gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
++..|.+-|.+.++.++.+|..++-++++|. +.++..|.....+..|++++.. .++.|+.|.+..|-.-.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999999995 7777777777777778888754 67899999988776543
No 134
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.23 E-value=15 Score=39.37 Aligned_cols=122 Identities=9% Similarity=0.110 Sum_probs=78.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC------CCCHHHHHHHHHHhhhhhcCCchhHHHHHH
Q 021251 32 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS------DPDVTVRTKALGAISSLIRHNKPGIEAFRL 105 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s------d~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 105 (315)
.+.+.+-+..+..+|||+-. | ..++.|..++.. +....+|+.|++||..+....+..
T Consensus 450 ~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~------ 512 (1056)
T 1lsh_A 450 DRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK------ 512 (1056)
T ss_dssp HTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH------
T ss_pred hcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH------
Confidence 34455566666677776653 2 246667676632 235678899999999998665432
Q ss_pred cCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHHHHHcCCcc
Q 021251 106 ANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 106 ~gGl~~L~~lL--~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
.-+++..+. ...+..+|..|+.+| +..+|. ...+..+...+.. .+.+|.--+...|.++++....
T Consensus 513 --v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 513 --VQEIVLPIFLNVAIKSELRIRSCIVF---FESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp --HHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred --HHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 223466666 446788988887655 333343 2455666666666 5677777777888888777644
No 135
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.23 E-value=4.5 Score=38.81 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=115.8
Q ss_pred HHHHHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHH
Q 021251 3 DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 3 e~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr 82 (315)
|.|--|.++-|--.-|++..|+..+.-..+-++.++-...++++-.++..-.-+.. --...+|-++..+.-.++++|.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceE
Confidence 33444445555556799999999998888889999888888888665543221100 0114577778877766788999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhc------------CCc---
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-------ESVKFQRKALNLIQYLLNE------------NAS--- 140 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-------~~~kl~~kA~~lLs~Ll~~------------~~~--- 140 (315)
-...+-+||.+.|..+..+.-+..|++..|-..+.. .+..-+..||..+.+-+.. +.+
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~ 422 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT 422 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence 999999999999998887777888999988887643 2455566667666653321 100
Q ss_pred ----ch---HHHHhcCchHHHHHhhCCCC------hHHHHHHHHHHHHHH
Q 021251 141 ----DC---SVVDKLGFPRLMLHLASSED------PDVREAALRGLLELA 177 (315)
Q Consensus 141 ----~~---~~l~~~g~v~~Lv~LL~s~d------~~v~e~aL~aL~~L~ 177 (315)
.+ ..+++..+++.|+.+|.-+. .++|-..++...-+.
T Consensus 423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 11 24566688889998887632 345666666555443
No 136
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.12 E-value=20 Score=32.92 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=95.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCH----HHHHHcccCCCCHHHHHHHHHHhhhhhcCCchh
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGL----EPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 99 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l----~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~ 99 (315)
+..+.+++ +=..+.|--+..++..++- +|.+-..+.+.+.- ..++..+.++..+..+.-++..++|+..+.. .
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-G 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-H
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-h
Confidence 45555665 4344567777777777765 56665655544332 3344555555567779999999999998744 4
Q ss_pred HHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--chHHHHhcCchHHHHHhhCC-CChHHHHHHHHHHH
Q 021251 100 IEAFRLA--NGYAALRDALGSESVKFQRKALNLIQYLLNENAS--DCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLL 174 (315)
Q Consensus 100 ~~~f~~~--gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~--~~~~l~~~g~v~~Lv~LL~s-~d~~v~e~aL~aL~ 174 (315)
.+.+... .-++.+..++.+++..+|.-++.++.+++..... ..+... -++..+..+++. .|.+..-.++-||+
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4444332 2345566666677899999999999988742111 111111 133444445544 67888889999999
Q ss_pred HHHcCC
Q 021251 175 ELAREK 180 (315)
Q Consensus 175 ~L~~~~ 180 (315)
+|+...
T Consensus 260 tL~~~~ 265 (304)
T 3ebb_A 260 TLISDD 265 (304)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 999764
No 137
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.05 E-value=5.5 Score=43.01 Aligned_cols=115 Identities=9% Similarity=0.035 Sum_probs=69.7
Q ss_pred HHHHHHcccC-CCCHHHHHHHHHHhhhhhcCCchh-HHHHHHcCcHHHHHHhhcCC---CHH--HHHHHHHHHHHHhhcC
Q 021251 66 LEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGSE---SVK--FQRKALNLIQYLLNEN 138 (315)
Q Consensus 66 l~~Ll~LL~s-d~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGl~~L~~lL~s~---~~k--l~~kA~~lLs~Ll~~~ 138 (315)
+++|-+.+.. ..+-.....++||++++...-.+. .+.|+- .-++.|+.+...+ +.| +....+|+++....--
T Consensus 479 ~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3444444443 245788899999999998543432 334432 4566666665433 333 4444456665533210
Q ss_pred CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcch
Q 021251 139 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 183 (315)
Q Consensus 139 ~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~ 183 (315)
....+.+. -++..|++.+...+..+++.|..|+..+++++...
T Consensus 558 ~~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 558 RAHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HhCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11112221 35666777778889999999999999999888643
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.69 E-value=1.9 Score=37.71 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=65.7
Q ss_pred HHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCC-C
Q 021251 84 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASS-E 161 (315)
Q Consensus 84 kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s-~ 161 (315)
..+-.|+-+++..+.+.+ ..+..|..-|++.++.++..|+.+|..++.+- +.....+.+..++..|+.++.. .
T Consensus 24 ~~~leicd~i~~~~~~~k-----~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~ 98 (220)
T 1dvp_A 24 PSILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTP 98 (220)
T ss_dssp HHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhhcCCCcCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCC
Confidence 345668888876554332 24556777888999999999999999999864 3344566666788888887764 5
Q ss_pred ChHHHHHHHHHHHHHHcC
Q 021251 162 DPDVREAALRGLLELARE 179 (315)
Q Consensus 162 d~~v~e~aL~aL~~L~~~ 179 (315)
+..|+++++..+..-+..
T Consensus 99 ~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 99 HENVRQKMLELVQTWAYA 116 (220)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 678888888777665544
No 139
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=79.36 E-value=20 Score=32.83 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC--chhHHHHHHcCcH
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHN--KPGIEAFRLANGY 109 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~--~~~~~~f~~~gGl 109 (315)
..+..+..++.+++|+..+ +..++.++.. .+++.+...+. +.+..+|+.+...+=|++--. ....+.- .--+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll 235 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCL 235 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHH
T ss_pred CChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHH
Confidence 4566799999999999985 5566766653 23444444433 357788887776666654311 0011110 0133
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCC
Q 021251 110 AALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 160 (315)
Q Consensus 110 ~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s 160 (315)
..+..++.. .+....-+++-+|..|+..+...++.....|+-..+-.....
T Consensus 236 ~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 236 SLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 444455543 578899999999999997654444555555655554444444
No 140
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=79.12 E-value=4.5 Score=33.59 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=67.3
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHH-HHHhhC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRL-MLHLAS 159 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~-s~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~-Lv~LL~ 159 (315)
....-.|+-+++..+.+.+ .++..|..-|+ ..++.++..|+.+|-.++.+. +.....+.+..++.. |+.++.
T Consensus 34 w~~~leicD~I~~~~~~~k-----~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~ 108 (157)
T 1elk_A 34 WALNMEICDIINETEEGPK-----DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTIL 108 (157)
T ss_dssp HHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhc
Confidence 4445677788876554332 34566888887 478999999999999999864 445566777788888 788885
Q ss_pred C---CChHHHHHHHHHHHHHHcC
Q 021251 160 S---EDPDVREAALRGLLELARE 179 (315)
Q Consensus 160 s---~d~~v~e~aL~aL~~L~~~ 179 (315)
. .+..|+++++..+..-+..
T Consensus 109 ~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 109 PKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Confidence 3 3568999999888776553
No 141
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=76.55 E-value=14 Score=39.27 Aligned_cols=75 Identities=7% Similarity=-0.016 Sum_probs=51.0
Q ss_pred cCChHHHHHhhcCC---CHHHHHHHHHHHHHHhhCCHHH----HHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhh
Q 021251 21 IGGLAPLLGYLKNS---HANIRAKAGEVVTTIVQNNPRS----QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 93 (315)
Q Consensus 21 ~Ggl~~Ll~lL~s~---~~~vR~~Aa~~LgtiaqNNp~~----Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~Li 93 (315)
-++|.....+|.++ +..+|..|+.+|-+..+.-|.- +...++.-.+..+.+.-....+..+|.|...+|+.++
T Consensus 39 p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~ 118 (980)
T 3ibv_A 39 STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLF 118 (980)
T ss_dssp TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 45889999999653 7899999999999877633333 4455555555555552111234578888888888877
Q ss_pred cC
Q 021251 94 RH 95 (315)
Q Consensus 94 R~ 95 (315)
.+
T Consensus 119 ~~ 120 (980)
T 3ibv_A 119 LQ 120 (980)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 142
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.70 E-value=6.8 Score=42.08 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=95.7
Q ss_pred HHHhhcC----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHhcCCHHHHH----HcccCCCCHHHHHHHHHHhhhhhc
Q 021251 27 LLGYLKN----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLL----SNFASDPDVTVRTKALGAISSLIR 94 (315)
Q Consensus 27 Ll~lL~s----~~~~vR~~Aa~~Lgtiaq----NNp~~Q~~vle~G~l~~Ll----~LL~sd~~~~vr~kAl~ALS~LiR 94 (315)
+..++.+ .++.+|..|.-++|+++. +++.|.. ..++.+. +.+.+ .+...+..++.||+|+-
T Consensus 396 ~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g- 468 (1056)
T 1lsh_A 396 ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAG- 468 (1056)
T ss_dssp HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHT-
T ss_pred HHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccC-
Confidence 3345555 467788888888887764 3222211 1233333 44444 46788899999999973
Q ss_pred CCchhHHHHHHcCcHHHHHHhhc-------CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh--CCCChHH
Q 021251 95 HNKPGIEAFRLANGYAALRDALG-------SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA--SSEDPDV 165 (315)
Q Consensus 95 ~~~~~~~~f~~~gGl~~L~~lL~-------s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL--~s~d~~v 165 (315)
++ ..++.|..++. +...+++..|+++|+.+....|. .+-+.+..+. ...+.++
T Consensus 469 -~p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 469 -QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp -CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHH
T ss_pred -Ch---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHH
Confidence 33 24556666653 22478999999999988854332 1223456666 4578889
Q ss_pred HHHHHHHHHHHHcCCcch------hhhhhhhhHHHHHHHHHHHHhhccCCC
Q 021251 166 REAALRGLLELAREKADG------SAIKLAEDNEKLKQLLGERIKGISLMS 210 (315)
Q Consensus 166 ~e~aL~aL~~L~~~~~~~------~~~c~~~~~~~L~~~L~~~~~~i~~~~ 210 (315)
|-.|+..|.. .+|.. +..-..++..++...+-+.++.+...+
T Consensus 531 RiaA~~~Lm~---t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVFFE---SKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHH---TCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH---HCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 9888766642 22211 111113466778888888888888764
No 143
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=75.24 E-value=4.6 Score=41.05 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=24.6
Q ss_pred CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 149 GFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 149 g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
..|+.|-.++++.-..||..++++|..+.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 67788888888888999999999987766
No 144
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.05 E-value=69 Score=34.52 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCCHHHHHHcccCC--CCHH--HHHHHHHHhhhhhcCCchhHHHHHHcCc
Q 021251 34 SHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASD--PDVT--VRTKALGAISSLIRHNKPGIEAFRLANG 108 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~-~Q~~vle~G~l~~Ll~LL~sd--~~~~--vr~kAl~ALS~LiR~~~~~~~~f~~~gG 108 (315)
.+-..+..++|++|.+++.-.. .-+.++- ..++.|+.+.... ++.. ++....|.+|...|--... ..|++ .-
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~-~v 567 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLK-TV 567 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH-HH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHH-HH
Confidence 3578999999999999875332 2112222 3466777775432 2223 4444558888765532211 23332 45
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cC----chHHHHHhhCC----CChHHHHHHHHHHHHHHc
Q 021251 109 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LG----FPRLMLHLASS----EDPDVREAALRGLLELAR 178 (315)
Q Consensus 109 l~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~--~g----~v~~Lv~LL~s----~d~~v~e~aL~aL~~L~~ 178 (315)
+..|++.+..+++.++.-||.++.+++..-.. .++. .| ++..++..+.+ =+..-......+++.+++
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~---~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQKCRR---HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG---GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH---HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 66777888888999999999999999974322 2221 11 34444433322 234444455566777766
Q ss_pred CCcc
Q 021251 179 EKAD 182 (315)
Q Consensus 179 ~~~~ 182 (315)
.-+.
T Consensus 645 ~~p~ 648 (1073)
T 3gjx_A 645 AQTD 648 (1073)
T ss_dssp TCCC
T ss_pred hCCC
Confidence 6653
No 145
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=70.85 E-value=13 Score=37.80 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=105.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CCHHHHHHcccC--------CC-CHHHHHHHHHHhhhh
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFAS--------DP-DVTVRTKALGAISSL 92 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~--G~l~~Ll~LL~s--------d~-~~~vr~kAl~ALS~L 92 (315)
...|+.-|-++.=++|+-||..|..+..-....-...... +..-.|+-+|.- |. --.||..|..+|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 3455666667888999999999987764332110000000 334444444432 21 237999999999998
Q ss_pred hcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHH
Q 021251 93 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG 172 (315)
Q Consensus 93 iR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~a 172 (315)
++-+.. ...+..|+..+..+.=.++--++-.|.|+ .. .... =.++++.++..|...|.+||.-|+.+
T Consensus 256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D--LL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE--FVED---KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG--GCCC---HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH--HHHH---HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 776554 34555555555777778888888888888 11 1111 13678888999999999999999999
Q ss_pred HHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCC
Q 021251 173 LLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLM 209 (315)
Q Consensus 173 L~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~ 209 (315)
|.-++ .+.. ...+.+.|-..+.+++.+
T Consensus 323 LiPIA--~p~~--------l~~LL~iLWd~L~~LDDL 349 (800)
T 3oc3_A 323 LCHFP--ITDS--------LDLVLEKCWKNIESEELI 349 (800)
T ss_dssp HTTSC--CSST--------HHHHHHHHHHHHHTCCSC
T ss_pred hhhhc--chhh--------HHHHHHHHHHHhhhhccc
Confidence 99988 2222 456667777777666544
No 146
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=70.61 E-value=28 Score=37.78 Aligned_cols=138 Identities=11% Similarity=0.089 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCch--hHHHHHH---cC
Q 021251 35 HANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GIEAFRL---AN 107 (315)
Q Consensus 35 ~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G--~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~--~~~~f~~---~g 107 (315)
+..++..|..++.+...--|. ..+++.. .++.++.++. ++.+|..|+-+|..++..+.. ....++. ..
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~ 294 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDV 294 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHH
T ss_pred hHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhH
Confidence 345777777777766654332 2334443 6677776654 357889999999998875532 1111221 11
Q ss_pred cHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhcCCcchHHHHh----------cCchHHHHHhhCCCChHHHHHH
Q 021251 108 GYAALRDALG--------SESVKFQRKALNLIQYLLNENASDCSVVDK----------LGFPRLMLHLASSEDPDVREAA 169 (315)
Q Consensus 108 Gl~~L~~lL~--------s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~----------~g~v~~Lv~LL~s~d~~v~e~a 169 (315)
++.-++..+. ..+..+.++.+.++..+... ....+.+ .++++.+..+..+++..+...+
T Consensus 295 ~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~ 371 (1204)
T 3a6p_A 295 AMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSST 371 (1204)
T ss_dssp HHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHH
Confidence 2333333331 12467888888888887632 1111110 1578888888888999999998
Q ss_pred HHHHHHHHcCC
Q 021251 170 LRGLLELAREK 180 (315)
Q Consensus 170 L~aL~~L~~~~ 180 (315)
+..-..+.++.
T Consensus 372 l~fW~~ll~~~ 382 (1204)
T 3a6p_A 372 QMTWGALFRHE 382 (1204)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHHhcc
Confidence 88777677664
No 147
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=63.74 E-value=93 Score=28.80 Aligned_cols=171 Identities=13% Similarity=0.158 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhC-CHHHHHHHHhcC---CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHH-----------
Q 021251 38 IRAKAGEVVTTIVQN-NPRSQQLVMEAN---GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA----------- 102 (315)
Q Consensus 38 vR~~Aa~~LgtiaqN-Np~~Q~~vle~G---~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~----------- 102 (315)
++|.-...|+++.+| +|..+..|+.+= --..++.. -+...|...++.|+.+-+-.+.....
T Consensus 113 L~~~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~----Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~ 188 (329)
T 3hjl_A 113 IEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQN----LPEELKKEVVKRIATLENVNVQYVKELAQILLEEISS 188 (329)
T ss_dssp HHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHT----SCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHh----CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHh
Confidence 334444445555544 565555555441 11122222 24577777778777776655543221
Q ss_pred -----HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-----Cch----HHHHHhhCCCChHHHHH
Q 021251 103 -----FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL-----GFP----RLMLHLASSEDPDVREA 168 (315)
Q Consensus 103 -----f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~-----g~v----~~Lv~LL~s~d~~v~e~ 168 (315)
+...||+..+..+|..-+.......+..| -..++...+.+.+. +++ +.+-.+|+.-+.+..-.
T Consensus 189 ~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L---~~~dpela~~Ir~~MF~Fedl~~lddr~iq~llrev~~~~L~~ 265 (329)
T 3hjl_A 189 LGAKEALKLEGTAVAAELLNTLDKETRELILQSI---GQEDPLLEERIREKMFTFEDIRKLSDRDIIEILKVVDKNTLMI 265 (329)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHH---HHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHH
T ss_pred cccccccccccHHHHHHHHhcCChHHHHHHHHHH---HHhCHHHHHHHHHHhcCHHHHhCCCHHHHHHHHHhCCHHHHHH
Confidence 12368999999999877766555444333 33333332222211 111 11222233322222222
Q ss_pred HHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHH
Q 021251 169 ALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREER 221 (315)
Q Consensus 169 aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~ 221 (315)
||. ..++......++.--.+..+.|++.++........|.++.|.++
T Consensus 266 ALK------ga~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~I 312 (329)
T 3hjl_A 266 ALL------GAPEDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQV 312 (329)
T ss_dssp HHH------TSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred HHc------CCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 221 11111111111233456677888888887777778888888776
No 148
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=61.19 E-value=71 Score=34.59 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc-CCCCHHHHHHHHHHhhhhhcCC----chhHHHHHHcCc
Q 021251 34 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHN----KPGIEAFRLANG 108 (315)
Q Consensus 34 ~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~-sd~~~~vr~kAl~ALS~LiR~~----~~~~~~f~~~gG 108 (315)
.+..+|.+|-..|..+-++ | ++...+...|. .+.+..+|--|+..|-+.++.+ +...+..++..-
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 3778899998888665332 2 24444444443 4567899999999999887652 333444555455
Q ss_pred HHHHHHhhcC---CCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcC
Q 021251 109 YAALRDALGS---ESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 179 (315)
Q Consensus 109 l~~L~~lL~s---~~~kl~~kA~~lLs~Ll~~~-~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~ 179 (315)
+..+...-.. ....++.+.+.++..++... +... -++++.++.++.+ +...++.++.+|..|+.+
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 5555443221 45899999999999998642 3211 2678888888877 556688899998888654
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=59.18 E-value=1.2e+02 Score=28.68 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=75.3
Q ss_pred CCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH--------h
Q 021251 64 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL--------L 135 (315)
Q Consensus 64 G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L--------l 135 (315)
+.++.++.+ ..+.+..+|...+.-|.-.++...... ...++.|..+|.++++.+.+++..+...+ +
T Consensus 63 ~fl~~il~f-~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAF-QADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889988 456789999999988887776543322 23566788888888888888877665554 3
Q ss_pred hcCCcc---hHHHHhc-CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 136 NENASD---CSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 136 ~~~~~~---~~~l~~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
...... .+....+ .+-..++.++.+.+..++-.|+.++..++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 322211 2233333 34456788899999999999999888765
No 150
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=58.91 E-value=65 Score=28.62 Aligned_cols=103 Identities=7% Similarity=0.030 Sum_probs=70.5
Q ss_pred cCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHH
Q 021251 32 KNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA 110 (315)
Q Consensus 32 ~s~~~~vR~~Aa~~Lgtiaq-NNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~ 110 (315)
..++=.||..++.+++.++. ..|+. .++.+..... +.+.-||+-|+-.+---+.. + ..+. .-.-.++
T Consensus 114 ~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~~-d~n~~VRR~Ase~~rpW~~~-~-~~k~-dp~~ll~ 181 (240)
T 3l9t_A 114 KDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWLK-SSNLHTRRAATEGLRIWTNR-P-YFKE-NPNEAIR 181 (240)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHHH-CSSHHHHHHHHHHTCSGGGS-T-TTTT-CHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhc-CCCHHHHHHHHHhhHHHhcc-c-hhhc-CHHHHHH
Confidence 34677899999999998885 45531 5666777755 56899999998876443322 1 0000 0012466
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 021251 111 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 146 (315)
Q Consensus 111 ~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~ 146 (315)
+|..+..+++.-+|.-..+.|.++...+|+--..++
T Consensus 182 iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 182 RIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 777777778899999999999999998876544333
No 151
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=58.74 E-value=11 Score=31.18 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=55.3
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCCHHH-HHHcccC--CCCHHHHHHHHHHhhhhhcCCc
Q 021251 23 GLAPLLGYLKN-SHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFAS--DPDVTVRTKALGAISSLIRHNK 97 (315)
Q Consensus 23 gl~~Ll~lL~s-~~~~vR~~Aa~~LgtiaqNN-p~~Q~~vle~G~l~~-Ll~LL~s--d~~~~vr~kAl~ALS~LiR~~~ 97 (315)
++..|.+-|.+ .++.+..+|..++.++++|. +.++..|.....+.- |++++.. ..+..|+.|.+..|-.-...++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45566666664 68888899999999999994 667777777666653 7777653 2456899999988888765543
No 152
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=57.69 E-value=1.2e+02 Score=28.25 Aligned_cols=131 Identities=11% Similarity=0.135 Sum_probs=95.5
Q ss_pred HHhhcCCCChhHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC---CHHHHHHcccCCCCHHHH
Q 021251 6 QEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN---GLEPLLSNFASDPDVTVR 82 (315)
Q Consensus 6 ~dLveniDnA~d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G---~l~~Ll~LL~sd~~~~vr 82 (315)
.+.+..-..|.-+...+-+-.+.++.+.++=+|-..|...+-.+-..+...-..++..+ .+...-+||.+ ++--+|
T Consensus 148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTk 226 (341)
T 1upk_A 148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTK 226 (341)
T ss_dssp HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHH
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhH
Confidence 33333333444444445566677888888999999999998877777766555666543 45667777776 578999
Q ss_pred HHHHHHhhhhhcC--CchhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 83 TKALGAISSLIRH--NKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 83 ~kAl~ALS~LiR~--~~~~~~~f~~-~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
+.++--|+-+.-+ +-.....++. ..-+.+++.+|++++..+|..|-..+--++.+
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9999999997654 4444555553 35689999999999999999999988877764
No 153
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=53.59 E-value=1.3e+02 Score=27.21 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=64.1
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC------------c---------hHHHHHhhCCCCh
Q 021251 105 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG------------F---------PRLMLHLASSEDP 163 (315)
Q Consensus 105 ~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g------------~---------v~~Lv~LL~s~d~ 163 (315)
..||+..+..+|..-+.......+ ..|-..++...+.+.+.= . -..|+-.|+.-+.
T Consensus 140 ~~gG~~~vA~ILN~~d~~~e~~iL---~~L~~~dpelAe~Ir~~MF~FeDl~~lddr~iq~llreV~~~~L~~ALKGa~~ 216 (279)
T 3pkr_A 140 EVGGLRAVAEIFNRLGQKSAKTTL---ARIESVDNKLAGAIKEMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTK 216 (279)
T ss_dssp CCCSHHHHHHHHHTSCHHHHHHHH---HHHHTTCHHHHHHHHTTSCCGGGGGGSCHHHHHHHHHHSCHHHHHHHTTTSCH
T ss_pred ccCcHHHHHHHHHcCChHHHHHHH---HHHHhhCHHHHHHHHHhccCHHHHhcCCHHHHHHHHHhCCHHHHHHHHcCCCH
Confidence 468999999999987766665544 444444444333332220 1 1222333333344
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH-HHHHHHHhCCCCcccccc
Q 021251 164 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV-DSLWNACYNEPSSLRDKG 242 (315)
Q Consensus 164 ~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~-~~L~~~~f~~~~~~~~~~ 242 (315)
.++++.+ +.--.+..+.|++.++........|.++.|.++--. .+ |-++|
T Consensus 217 elrekil------------------~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~-----------L~e~G 267 (279)
T 3pkr_A 217 DLTDKFL------------------NNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQS-----------LQEKG 267 (279)
T ss_dssp HHHHHHH------------------TTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-----------HHHTT
T ss_pred HHHHHHH------------------HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----------HHHCC
Confidence 4444443 223455677888888887777778888888776322 33 34578
Q ss_pred eeecCCC
Q 021251 243 LLVLPGE 249 (315)
Q Consensus 243 ~~~~~~~ 249 (315)
-++|.|.
T Consensus 268 eI~l~~~ 274 (279)
T 3pkr_A 268 VIQTGEE 274 (279)
T ss_dssp SSCC---
T ss_pred CEEeCCc
Confidence 8888743
No 154
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=51.92 E-value=30 Score=28.18 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=55.3
Q ss_pred HHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH-HHHhc-CchHHHHHhhCCCC
Q 021251 85 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS-VVDKL-GFPRLMLHLASSED 162 (315)
Q Consensus 85 Al~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~-~l~~~-g~v~~Lv~LL~s~d 162 (315)
.+--|+.+++++... .| .--...|..-|..++..++.||+.+|.||+........ .+.+. ..|+.+..+=..++
T Consensus 31 lm~EIA~~T~~s~~~--~~--~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~d 106 (140)
T 1vdy_A 31 KLEEICDLLRSSHVS--IV--KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHSCHH--HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCC
T ss_pred HHHHHHHHHHhcchh--HH--HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 344566666654321 11 12456788888889999999999999999976654332 22222 23444433332233
Q ss_pred --------hHHHHHHHHHHHHHHcCC
Q 021251 163 --------PDVREAALRGLLELAREK 180 (315)
Q Consensus 163 --------~~v~e~aL~aL~~L~~~~ 180 (315)
..||++|=.++..|-...
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred cccccchhHHHHHHHHHHHHHHhCcC
Confidence 458888877666665443
No 155
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=49.46 E-value=41 Score=27.57 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=63.0
Q ss_pred ChHHHHHhhcCCCChhHHHHcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc
Q 021251 1 MLDELQEHVESIDMANDLHSIGGLAPLLGYLKN------SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 74 (315)
Q Consensus 1 lLe~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~ 74 (315)
||.+....+...+....|.+.|.+..+-..|.- ++-.||.....+|.++= -.++++.+.|....+..+-.
T Consensus 40 lL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 40 NVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp HHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhc
Confidence 477888888899999999999999999887752 68899999999998873 22567777776666655543
Q ss_pred CC-CCHHHHHHHHHHhh
Q 021251 75 SD-PDVTVRTKALGAIS 90 (315)
Q Consensus 75 sd-~~~~vr~kAl~ALS 90 (315)
+. ...+.|..|-.-|.
T Consensus 116 ~~~et~~nk~la~~Li~ 132 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQ 132 (145)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHH
Confidence 32 34566666654443
No 156
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.58 E-value=27 Score=28.74 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=65.5
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHH-HHHhhC
Q 021251 83 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRL-MLHLAS 159 (315)
Q Consensus 83 ~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s-~~~kl~~kA~~lLs~Ll~~~~~-~~~~l~~~g~v~~-Lv~LL~ 159 (315)
...+-.||-+++..+.+.+ ..+..|..-|.+ .+++++..|+.+|..++.+... ....+.+..|+.. |+.++.
T Consensus 34 w~~ileicD~In~~~~~pk-----eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~ 108 (152)
T 3rru_A 34 WGQFMHICDIINTTQDGPK-----DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLN 108 (152)
T ss_dssp HHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGS
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhc
Confidence 3456677777776544322 345667777774 6899999999999999875433 3445555667764 777776
Q ss_pred C---CChHHHHHHHHHHHHHHcCCc
Q 021251 160 S---EDPDVREAALRGLLELAREKA 181 (315)
Q Consensus 160 s---~d~~v~e~aL~aL~~L~~~~~ 181 (315)
. .+..|+++++..+.+-+....
T Consensus 109 ~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 109 PRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 4 345799999999999887664
No 157
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=45.98 E-value=1.2e+02 Score=24.70 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=59.4
Q ss_pred hhhhhcCCchhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC-
Q 021251 89 ISSLIRHNKPGIEAFRLANGYAALRDALGS------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE- 161 (315)
Q Consensus 89 LS~LiR~~~~~~~~f~~~gGl~~L~~lL~s------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~- 161 (315)
+...++. ...+..|++.|.+.++...|.. ++..+|...+.+|..| |..++.+.+.|+-+.++-+-+++
T Consensus 44 V~~~l~k-~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~~ 118 (145)
T 2xpp_A 44 ISDILMS-KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINPK 118 (145)
T ss_dssp HHHHHTC-TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCTT
T ss_pred HHHHHhh-HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCCc
Confidence 3344433 3457899999999999999975 4588888877766665 56788899999999888888774
Q ss_pred -ChHHHHHHHHHHHH
Q 021251 162 -DPDVREAALRGLLE 175 (315)
Q Consensus 162 -d~~v~e~aL~aL~~ 175 (315)
....+..|-..+..
T Consensus 119 et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 119 ESKEVRASAKALVQK 133 (145)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 45566666555543
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=43.36 E-value=68 Score=25.91 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHH
Q 021251 33 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 112 (315)
Q Consensus 33 s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L 112 (315)
++.+.|...+.|++-+. ..-..+++ .+-+-+.. ..+.-+.-++|-+-+++|+...-+......+-.+++
T Consensus 22 nSk~~I~~LT~~a~~~~-----~~a~~Iv~-----~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f 90 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENI-----SCAQYFVD-----AIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLY 90 (144)
T ss_dssp CCHHHHHHHHHHHHHTG-----GGHHHHHH-----HHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHH
T ss_pred ccHhHHHHHHHHHHHHH-----HHHHHHHH-----HHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 45566777666666543 22233333 23333333 468999999999999999876656555566777788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHH
Q 021251 113 RDALGSESVKFQRKALNLIQYL 134 (315)
Q Consensus 113 ~~lL~s~~~kl~~kA~~lLs~L 134 (315)
......-+...|.|...++.-=
T Consensus 91 ~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 91 KRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 8887777888888877765443
No 159
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=40.47 E-value=1.6e+02 Score=24.63 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred chhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCC--ChHHHHH
Q 021251 97 KPGIEAFRLANGYAALRDALGS------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREA 168 (315)
Q Consensus 97 ~~~~~~f~~~gGl~~L~~lL~s------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~--d~~v~e~ 168 (315)
...+..|++.|.+.++...|.. +...+|...+.+|..| |..++.+.+.|+-+.++-+-+++ ....+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 4457889999999999999975 4578998887777665 56678888889888888777664 4567777
Q ss_pred HHHHHHHHH
Q 021251 169 ALRGLLELA 177 (315)
Q Consensus 169 aL~aL~~L~ 177 (315)
|-..+..-+
T Consensus 142 a~~Li~~Ws 150 (170)
T 3nfq_A 142 AEKLIAEWT 150 (170)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 766666543
No 160
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=40.15 E-value=1.1e+02 Score=30.15 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=78.0
Q ss_pred HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC-CCCHH-HHHHHHHHhhhhhc
Q 021251 17 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVT-VRTKALGAISSLIR 94 (315)
Q Consensus 17 d~~~~Ggl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s-d~~~~-vr~kAl~ALS~LiR 94 (315)
++.+.=.++-++.-|+++++.+...||++|+ ...| +.-|...+.+..|++++-. ++... +..+.=.+++.++.
T Consensus 111 ~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p--k~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss 185 (500)
T 3vld_A 111 DVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP--KGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST 185 (500)
T ss_dssp HHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS--GGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc--hhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc
Confidence 3444556788889999999999999999998 3334 5677888999999999643 34444 54444445555542
Q ss_pred CCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 021251 95 HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 137 (315)
Q Consensus 95 ~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~ 137 (315)
+ .-.+..+. .+-++.+..+=.+.++.+..|-..++.-++..
T Consensus 186 d-eLirrril-~nnl~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 186 D-ELIRRRLF-DNNLPYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp S-HHHHHHHH-TTTHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHH-HHhHHHHHHHhcCCCceeHHHHHHHHHHHhcc
Confidence 2 22233444 36778887776677888888888888777643
No 161
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=39.63 E-value=28 Score=37.28 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=67.0
Q ss_pred ChHHHHHhhcCCC-HHHHHHHHHHHHHHhhCC-H-HHHHHHHh---cCC-----HHHHHHcccCCCCHHHHHHHHHHhhh
Q 021251 23 GLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNN-P-RSQQLVME---ANG-----LEPLLSNFASDPDVTVRTKALGAISS 91 (315)
Q Consensus 23 gl~~Ll~lL~s~~-~~vR~~Aa~~LgtiaqNN-p-~~Q~~vle---~G~-----l~~Ll~LL~sd~~~~vr~kAl~ALS~ 91 (315)
.+..++.+|.++. .+||..|+.+|+.+.+.. + ...+.+++ ... ...+-+-. +.+...|-.|+.+||+
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~--~~~~~~rH~aVLgL~A 921 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL--SKTDIKIHGNVLGLGA 921 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH--HHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc--chHHHHHHHHHHHHHH
Confidence 4667778999999 999999999999998876 4 32222222 111 11111110 1112466788889999
Q ss_pred hhcCCchhH--HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 021251 92 LIRHNKPGI--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 140 (315)
Q Consensus 92 LiR~~~~~~--~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~ 140 (315)
++..+|-.. -.++- .-+..|.....++.+ ++.-+-.+|+.+-..+.+
T Consensus 922 lV~a~Py~vP~P~w~P-~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 922 IISAFPYVFPLPPWIP-KNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHTTCSCCSSCCTHHH-HHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred HHhhCCCCCCCCcccH-HHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 888876543 22321 233444444554433 666666677777655443
No 162
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=38.93 E-value=2.4e+02 Score=27.13 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=69.0
Q ss_pred HHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC-CCChH
Q 021251 86 LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPD 164 (315)
Q Consensus 86 l~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~-s~d~~ 164 (315)
.+-+-++.-|...+.+-|++.+|+..+..+.+-++..+-+..+.+|-...+.. ... ..--...++-++..++ +++.+
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~-~t~L~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALA-KTPLENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGG-TSCCTTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHh-hccccccchHHHHHhccCCCcc
Confidence 35566777888889999999999999999999999988888887776554321 100 0011144555665554 57888
Q ss_pred HHHHHHHHHHHHHcCCcch
Q 021251 165 VREAALRGLLELAREKADG 183 (315)
Q Consensus 165 v~e~aL~aL~~L~~~~~~~ 183 (315)
+.-.....|++.+.+....
T Consensus 341 vvYSGTGFLSNVVAHKq~V 359 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHV 359 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHH
T ss_pred eEEecchHHHHHHhcccch
Confidence 8888889999998888543
No 163
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=38.85 E-value=2.1e+02 Score=25.37 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=74.7
Q ss_pred CHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH--------hh
Q 021251 65 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL--------LN 136 (315)
Q Consensus 65 ~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~L--------l~ 136 (315)
.++.++.+ ..+.+..+|...+.-|.-.++.++.. ....++.|..+|..+++.+.+++..+...+ +.
T Consensus 54 ~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 54 FLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667776 45678999999888888777654432 234567788888888899988888766654 33
Q ss_pred cCCc---chHHHHhc-CchHHHHHhhCCCChHHHHHHHHHHHHHH
Q 021251 137 ENAS---DCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA 177 (315)
Q Consensus 137 ~~~~---~~~~l~~~-g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~ 177 (315)
.... ..+....+ .+-..++.++.+.+..++-.|+..+..++
T Consensus 128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 128 LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 2221 12333333 34456788899999999999999998776
No 164
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.51 E-value=43 Score=29.69 Aligned_cols=104 Identities=9% Similarity=0.077 Sum_probs=61.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC-------CCHHHHHHHHHHhhhhhc---CCchhH
Q 021251 31 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-------PDVTVRTKALGAISSLIR---HNKPGI 100 (315)
Q Consensus 31 L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd-------~~~~vr~kAl~ALS~LiR---~~~~~~ 100 (315)
+.+.++..+..++.+++|+.++....++.+........++..+.+. .+..+|+.+...+=|++- +...
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 4456788999999999999997553455555443344455544221 134566665555544432 1111
Q ss_pred HHHHHcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHHhhcCCc
Q 021251 101 EAFRLANGYAALRDALGS---------ESVKFQRKALNLIQYLLNENAS 140 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s---------~~~kl~~kA~~lLs~Ll~~~~~ 140 (315)
+......+..++.. .+....-+++-++..|+..++.
T Consensus 177 ----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 177 ----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp ----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred ----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 12234445555542 3778888899999998865443
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=38.10 E-value=1.3e+02 Score=28.95 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=68.3
Q ss_pred hHHHHHhhcCCCChhHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCC----
Q 021251 2 LDELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD---- 76 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~Ggl~~Ll-~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd---- 76 (315)
||.|.-++-+...+..+. .++ ..+.+..+..+..+..+++|+.++-..-+..+........+++.+...
T Consensus 247 LDLLRl~v~~p~~~~~l~------~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~ 320 (425)
T 3pst_A 247 YDIVRLIVKKLPYSSDIK------DYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQA 320 (425)
T ss_dssp HHHHHHHGGGCSCGGGGH------HHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTC
T ss_pred HHHHHHHHcCCchHHHHH------HHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhc
Confidence 344555555555443322 233 233456789999999999999987543344333322345666655321
Q ss_pred ---CCHHHHHHHHHHhhhhhcCCchhHHHH-HHcCcHHHHHHhhc---------CCCHHHHHHHHHHHHHHhhcCC
Q 021251 77 ---PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALG---------SESVKFQRKALNLIQYLLNENA 139 (315)
Q Consensus 77 ---~~~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGl~~L~~lL~---------s~~~kl~~kA~~lLs~Ll~~~~ 139 (315)
.+..+|+.+...+=|++- ....- ........+..++. ..+....-+++-+|..|+...+
T Consensus 321 ~~~~nkNl~IA~ATLllNlAv----~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 321 SAKQSQNLAIAVSTLIFNYSA----LVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred ccCCCchHHHHHHHHHHHHHH----HHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 123444444333333221 10000 00123345666655 2478888889999998886433
No 166
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=36.84 E-value=1.2e+02 Score=28.42 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCc-HHHHHHhh-
Q 021251 39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG-YAALRDAL- 116 (315)
Q Consensus 39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG-l~~L~~lL- 116 (315)
|--+..++..++-+-+.. +.+..++.-...+..+..+.-++.+++|+..+...+...+ .... ...+...+
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll-~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL-ESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH-TSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHH-hcchhHHHHHHHHH
Confidence 566777887777654321 2344444332224578999999999999998765344333 2211 22233332
Q ss_pred ---c----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC---------CCChHHHHHHHHHHHHHHcCC
Q 021251 117 ---G----SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---------SEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 117 ---~----s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~---------s~d~~v~e~aL~aL~~L~~~~ 180 (315)
. +.+..++.-++.++.+++......+. +..++..+++++. ..|.+..-.+|-||++|+...
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 12467888888888887642111000 1233445666555 257888888999999998654
Q ss_pred c
Q 021251 181 A 181 (315)
Q Consensus 181 ~ 181 (315)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=32.74 E-value=90 Score=26.24 Aligned_cols=89 Identities=10% Similarity=0.058 Sum_probs=63.3
Q ss_pred ChHHHHHhhcCCCChhHHHHcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHccc
Q 021251 1 MLDELQEHVESIDMANDLHSIGGLAPLLGYLKN------SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 74 (315)
Q Consensus 1 lLe~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s------~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~ 74 (315)
||.+....+..-+....|...|.+..+-..|.- ++-.||.....+|..+- -.++++.+.|....++.+-.
T Consensus 55 mL~~V~~~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k 130 (170)
T 3nfq_A 55 LLPKVVSVLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTK 130 (170)
T ss_dssp HHHHHHHHHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhc
Confidence 467788888888999999999999999887752 68899999999998763 23466666666665555533
Q ss_pred CC-CCHHHHHHHHHHhhhhh
Q 021251 75 SD-PDVTVRTKALGAISSLI 93 (315)
Q Consensus 75 sd-~~~~vr~kAl~ALS~Li 93 (315)
+. .....|..|---|..-.
T Consensus 131 ~~~et~~nkrla~~Li~~Ws 150 (170)
T 3nfq_A 131 SKRVEAQLARLAEKLIAEWT 150 (170)
T ss_dssp CTTSCHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHHHHHH
Confidence 32 34566666655555443
No 168
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=32.39 E-value=1.1e+02 Score=26.22 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=51.6
Q ss_pred HHHHhhcCCCChhHHHHcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCCHHHHHHcc-cC
Q 021251 4 ELQEHVESIDMANDLHSIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNF-AS 75 (315)
Q Consensus 4 ~L~dLveniDnA~d~~~~Ggl~~Ll~lL~s---~~~~vR~~Aa~~LgtiaqN----Np~~Q~~vle~G~l~~Ll~LL-~s 75 (315)
...-|++|-.---+-.-.-.+|+++.|+=+ ....+|..||.+++.++.. ++..|..+ +..|.+.+ +.
T Consensus 69 ~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI-----~~tl~k~l~dp 143 (196)
T 4atg_A 69 LYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRV-----LKTLKGVWMDP 143 (196)
T ss_dssp HHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHH-----HHHHHHHHTCT
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHH-----HHHHHHHHcCC
Confidence 334444443322222223357888877622 3448999999999998864 24444443 34455554 34
Q ss_pred CCCHHHHHHHHHHhhhh
Q 021251 76 DPDVTVRTKALGAISSL 92 (315)
Q Consensus 76 d~~~~vr~kAl~ALS~L 92 (315)
..+...+--|++.|+.+
T Consensus 144 ~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 144 NRSEDSQYGALYCLSIL 160 (196)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 46778888888888887
No 169
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=32.06 E-value=1.1e+02 Score=28.62 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=55.9
Q ss_pred ChHHHHHhhcCCCCh-----------------hHHHHcCChHHHHHhhcCC---C-------------------HHHHHH
Q 021251 1 MLDELQEHVESIDMA-----------------NDLHSIGGLAPLLGYLKNS---H-------------------ANIRAK 41 (315)
Q Consensus 1 lLe~L~dLveniDnA-----------------~d~~~~Ggl~~Ll~lL~s~---~-------------------~~vR~~ 41 (315)
+|++|.++|.+.++. +-|.+.|.+..|+.+|..+ + ..|-..
T Consensus 253 ~L~dLi~F~~~~~~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~~~~~~~~~~~~l~~~~~~~~~~i~~l 332 (381)
T 1n4k_A 253 LLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGDGPMLRLEELGDQRHAPFRHICRL 332 (381)
T ss_dssp HHHHHHHHHTTTSCCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC-----------------CHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhccccCccchhhHHHhcchhhhHHHHHHHH
Confidence 477888888876531 2346688888888888543 1 124444
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 42 AGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 42 Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
.-.+|..++++|...|.++.+. ++.+...+.. + .-|.-+|-.|+.+|
T Consensus 333 ~Y~LL~~~~~~~r~Nq~y~ak~--~~~~q~qig~--~----~~a~d~i~~ll~nN 379 (381)
T 1n4k_A 333 CYRVLRHSQQDYRKNQEYIAKQ--FGFMQKQIGY--D----VLAEDTITALLHNN 379 (381)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--HHHHHHHHCT--T----HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhCc--c----ccHHHHHHHHHhcC
Confidence 6677888888999999988776 5555555443 2 33444555555544
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=30.86 E-value=1.6e+02 Score=28.30 Aligned_cols=132 Identities=13% Similarity=0.149 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCCchhHHHHHHcCcHHHHHHhhcC
Q 021251 39 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 118 (315)
Q Consensus 39 R~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGl~~L~~lL~s 118 (315)
|--+..++..++-+-+.. +.+..++.-...+.....+.-++.+++|+..+...+...+....-...++..+.+
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 556777887777654422 2233344332224578899999999999988765344333221113444444321
Q ss_pred --------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhC---------CCChHHHHHHHHHHHHHHcCC
Q 021251 119 --------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---------SEDPDVREAALRGLLELAREK 180 (315)
Q Consensus 119 --------~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~---------s~d~~v~e~aL~aL~~L~~~~ 180 (315)
.+..++.-++.++.+++......+. +..++..++.++. ..|.+..-.+|-||++|+...
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2457888888888887742111000 1233445555555 247888888999999998644
No 171
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.12 E-value=1.4e+02 Score=27.97 Aligned_cols=105 Identities=9% Similarity=0.037 Sum_probs=57.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC----CC---CHHHHHHHHHHhhhhhcCCchhHHH-
Q 021251 31 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS----DP---DVTVRTKALGAISSLIRHNKPGIEA- 102 (315)
Q Consensus 31 L~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s----d~---~~~vr~kAl~ALS~LiR~~~~~~~~- 102 (315)
+.+..+..+..+..+++|+.++...-++.+........+++.+.. .. +..+|+.+...+=|++- ....
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv----~~~~~ 283 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSA----LVTKG 283 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHH----HHHHT
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHH----HHhcc
Confidence 345678999999999999998754334433221123344544421 11 23455544444433321 1000
Q ss_pred HHHcCcHHHHHHhhc---------CCCHHHHHHHHHHHHHHhhcCC
Q 021251 103 FRLANGYAALRDALG---------SESVKFQRKALNLIQYLLNENA 139 (315)
Q Consensus 103 f~~~gGl~~L~~lL~---------s~~~kl~~kA~~lLs~Ll~~~~ 139 (315)
-........+..++. ..+....-+++-+|..|+...+
T Consensus 284 ~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 284 NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp CSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred cchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 000123445666665 2578888999999999986433
No 172
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=26.72 E-value=23 Score=22.40 Aligned_cols=19 Identities=42% Similarity=0.849 Sum_probs=13.3
Q ss_pred cCCCCCCCccccccccCChhh
Q 021251 246 LPGEDAPPPDVASKHFEPPLR 266 (315)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ 266 (315)
-||||++|.|.|. |-.-||
T Consensus 7 ~Pg~da~pEela~--Y~~~Lr 25 (37)
T 1qbf_A 7 APGEDASPEELSR--YYASLR 25 (37)
T ss_dssp CCCCSSSSSTTTT--TTTGGG
T ss_pred CCCCCCCHHHHHH--HHHHHH
Confidence 4999999999863 334444
No 173
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.63 E-value=1.4e+02 Score=24.15 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=27.0
Q ss_pred chHHHHHhhCCCChHHHHHHHHHHHHHHcCCcc
Q 021251 150 FPRLMLHLASSEDPDVREAALRGLLELAREKAD 182 (315)
Q Consensus 150 ~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~ 182 (315)
++..|..-|...+..+.-+||..|..|+.....
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 566777777888888999999999999877653
No 174
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=25.58 E-value=19 Score=22.59 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=10.8
Q ss_pred cCCCCCCCccccc
Q 021251 246 LPGEDAPPPDVAS 258 (315)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (315)
-||||++|-|.|.
T Consensus 7 ~PG~dA~pEela~ 19 (36)
T 1bba_A 7 YPGDNATPEQMAQ 19 (36)
T ss_dssp CCSSCSSTTHHHH
T ss_pred CCCCCCCHHHHHH
Confidence 4999999988863
No 175
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.31 E-value=1.9e+02 Score=27.63 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCChhHHHHcC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc------CCHHHHHHcc
Q 021251 2 LDELQEHVESIDMANDLHSIG--GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA------NGLEPLLSNF 73 (315)
Q Consensus 2 Le~L~dLveniDnA~d~~~~G--gl~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~------G~l~~Ll~LL 73 (315)
|.+|+++++-+ ...+|.++. .+..+-+++.|++-.|-++|..+. ||+.+-..+.+. -.++.|.+..
T Consensus 272 L~Ele~iLe~~-~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w-----nNe~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 272 LNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh-----ccHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred cCCCCHHHHHHHHHHhhhhhcCCch
Q 021251 74 ASDPDVTVRTKALGAISSLIRHNKP 98 (315)
Q Consensus 74 ~sd~~~~vr~kAl~ALS~LiR~~~~ 98 (315)
++.=+.+++..|..++.-+..-++.
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHccCHHHHHHHHHHHHHHHHhCHH
No 176
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=24.14 E-value=24 Score=22.30 Aligned_cols=13 Identities=62% Similarity=0.974 Sum_probs=10.6
Q ss_pred cCCCCCCCccccc
Q 021251 246 LPGEDAPPPDVAS 258 (315)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (315)
-||||++|.|.|.
T Consensus 7 ~Pg~~a~pEela~ 19 (37)
T 1f8p_A 7 NPGEDAPAEDLAR 19 (37)
T ss_dssp CCCSSCTTTTHHH
T ss_pred CCCCCCCHHHHHH
Confidence 4999999998763
No 177
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=22.00 E-value=2.7e+02 Score=30.83 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=72.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHH
Q 021251 114 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNE 193 (315)
Q Consensus 114 ~lL~s~~~kl~~kA~~lLs~Ll~~~~~~~~~l~~~g~v~~Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~ 193 (315)
.++.+.+..++.-+..+-.++..... ...+..++..|+..+.++...=...|+.+|..|+..++.....|
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~fd----~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~------ 476 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFFD----TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLN------ 476 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHT------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHH------
Confidence 44677889999888888888877643 34455677888888878777777789999999998886655433
Q ss_pred HHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 021251 194 KLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS 236 (315)
Q Consensus 194 ~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~~f~~~~ 236 (315)
-..|..-+..++.|+.. +-+.+..-|....|+.+.
T Consensus 477 --a~~l~giLD~l~~l~~~------QiRklf~iL~~laf~~~~ 511 (1323)
T 3s4w_B 477 --AAFVKGILDYLENMSPQ------QIRKIFCILSTLAFSQQP 511 (1323)
T ss_dssp --HHHHHGGGGGGGGCCHH------HHHHHHHHHHHHHHHHCS
T ss_pred --HHHHHHHHHhhcCCCHH------HHHHHHHHHHHHHcCCCC
Confidence 23455556666666533 345555666667787654
No 178
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.17 E-value=82 Score=24.53 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=42.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccCCCCHHHHHHHHHHhhhhhcCC
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 96 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~sd~~~~vr~kAl~ALS~LiR~~ 96 (315)
+.-.+.-|++....|+..+.|++-+.-. -..++ ..+.+-+.. .++.-|...+|-+..++++.
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~-----a~~Iv-----~~i~~~l~~-~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKH-----HSTIV-----YHWMKWLRR-SAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGG-----HHHHH-----HHHHHHHHH-SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHH-----HHHHH-----HHHHHHHHc-CChhhHHHHHHHHHHHHHHh
Confidence 4555666777788899999999965432 22333 233344444 35788999999999999875
No 179
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=20.86 E-value=3e+02 Score=22.29 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=36.1
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHH
Q 021251 154 MLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNA 230 (315)
Q Consensus 154 Lv~LL~s~d~~v~e~aL~aL~~L~~~~~~~~~~c~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~eE~~~~~~L~~~ 230 (315)
-..|++|.+..-+...+..|..+.+..+...++| .-.|.-..=++. | |.+=+.+|+.|+++
T Consensus 46 Aw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~Rdc--------LYyLAvg~ykl~-----~---Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 46 AWGLIKSTDVNDERLGVKILTDIYKEAESRRREC--------LYYLTIGCYKLG-----E---YSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHH--------HHHHHHHHHTTT-----C---HHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHH--------HHHHHHHHHHhh-----h---HHHHHHHHHHHHhc
Confidence 3455666666666677777777777666555555 444444444444 2 55556666666653
No 180
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=20.10 E-value=1e+02 Score=32.87 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=66.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHcccC---CCCHHHHHHHHHHhhhhhcCCchhH
Q 021251 24 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS---DPDVTVRTKALGAISSLIRHNKPGI 100 (315)
Q Consensus 24 l~~Ll~lL~s~~~~vR~~Aa~~LgtiaqNNp~~Q~~vle~G~l~~Ll~LL~s---d~~~~vr~kAl~ALS~LiR~~~~~~ 100 (315)
+.-|+++-.|..++||..|-.++-.+.+--+.+... +++.+++.|+. +.+..-..-|+|.|..--.+..-..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 344556666789999999999999999876666544 46677777765 4455556778887762100000001
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 021251 101 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 136 (315)
Q Consensus 101 ~~f~~~gGl~~L~~lL~s~~~kl~~kA~~lLs~Ll~ 136 (315)
+-..-.--++.|+++...+.+.++.-+-.+...+..
T Consensus 210 d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~ 245 (997)
T 1vsy_5 210 DYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVI 245 (997)
T ss_dssp CHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh
Confidence 111122456778888777766666655555445443
Done!