Query 021254
Match_columns 315
No_of_seqs 213 out of 1158
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 3.7E-50 7.9E-55 374.1 12.7 185 129-313 76-262 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 3.6E-42 7.8E-47 300.3 16.9 161 142-302 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 4.8E-40 1E-44 283.0 15.4 158 143-304 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 3E-38 6.6E-43 283.7 14.6 158 139-312 18-193 (195)
5 KOG2832 TFIIF-interacting CTD 100.0 2.9E-33 6.3E-38 267.2 12.5 169 125-309 169-342 (393)
6 TIGR02250 FCP1_euk FCP1-like p 100.0 4.9E-32 1.1E-36 235.7 13.0 138 139-279 3-154 (156)
7 COG5190 FCP1 TFIIF-interacting 100.0 3.3E-29 7.1E-34 244.2 12.6 173 137-310 207-381 (390)
8 smart00577 CPDc catalytic doma 100.0 4.3E-28 9.4E-33 207.9 14.9 145 141-285 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.8 2.5E-18 5.5E-23 176.4 10.6 137 140-279 144-297 (635)
10 TIGR01685 MDP-1 magnesium-depe 98.9 4E-09 8.7E-14 93.6 8.4 137 143-279 3-157 (174)
11 TIGR01681 HAD-SF-IIIC HAD-supe 98.7 6.7E-09 1.4E-13 87.1 3.2 111 143-265 1-121 (128)
12 PRK13288 pyrophosphatase PpaX; 98.7 9.8E-09 2.1E-13 91.9 2.9 96 181-277 81-180 (214)
13 PLN03243 haloacid dehalogenase 98.7 1.3E-08 2.8E-13 95.3 3.3 98 181-279 108-209 (260)
14 PRK14988 GMP/IMP nucleotidase; 98.6 1.9E-08 4E-13 91.8 2.3 93 181-274 92-188 (224)
15 TIGR01993 Pyr-5-nucltdase pyri 98.6 3.3E-08 7.1E-13 86.5 2.6 92 181-275 83-181 (184)
16 TIGR01509 HAD-SF-IA-v3 haloaci 98.5 5.1E-08 1.1E-12 84.0 3.2 92 181-274 84-179 (183)
17 PRK11587 putative phosphatase; 98.5 7.4E-08 1.6E-12 86.9 4.2 97 181-279 82-182 (218)
18 PRK13226 phosphoglycolate phos 98.5 6.6E-08 1.4E-12 88.2 3.9 96 180-276 93-192 (229)
19 COG4996 Predicted phosphatase 98.5 4.5E-07 9.7E-12 77.1 8.3 137 144-283 2-150 (164)
20 PRK10725 fructose-1-P/6-phosph 98.5 2E-08 4.4E-13 87.6 -0.2 95 181-277 87-184 (188)
21 TIGR01662 HAD-SF-IIIA HAD-supe 98.5 1.7E-07 3.6E-12 77.9 5.2 115 143-275 1-127 (132)
22 PRK13225 phosphoglycolate phos 98.5 4.4E-08 9.6E-13 92.4 1.8 96 181-277 141-237 (273)
23 PLN02575 haloacid dehalogenase 98.5 4.4E-08 9.5E-13 96.7 1.6 98 181-279 215-316 (381)
24 COG0637 Predicted phosphatase/ 98.5 3.6E-08 7.7E-13 90.0 0.8 99 181-280 85-187 (221)
25 PHA03398 viral phosphatase sup 98.5 2E-06 4.4E-11 82.2 12.0 127 139-288 125-287 (303)
26 cd01427 HAD_like Haloacid deha 98.4 2.5E-07 5.5E-12 74.1 4.4 107 144-266 1-127 (139)
27 TIGR00213 GmhB_yaeD D,D-heptos 98.4 6.8E-07 1.5E-11 78.4 6.6 115 143-275 2-146 (176)
28 TIGR03351 PhnX-like phosphonat 98.3 1.9E-07 4.2E-12 83.7 2.0 95 181-275 86-186 (220)
29 TIGR01684 viral_ppase viral ph 98.3 1.4E-06 2.9E-11 83.3 7.8 127 139-288 123-285 (301)
30 PRK13223 phosphoglycolate phos 98.3 4.1E-07 9E-12 85.5 4.3 94 181-275 100-197 (272)
31 TIGR01656 Histidinol-ppas hist 98.3 6.1E-07 1.3E-11 76.5 4.3 117 143-275 1-141 (147)
32 TIGR00338 serB phosphoserine p 98.3 5.8E-07 1.2E-11 80.5 4.1 97 181-279 84-194 (219)
33 PLN02940 riboflavin kinase 98.3 1.9E-07 4E-12 92.2 0.4 97 181-278 92-193 (382)
34 PRK10563 6-phosphogluconate ph 98.3 2.2E-07 4.7E-12 83.5 0.6 95 181-278 87-185 (221)
35 TIGR01261 hisB_Nterm histidino 98.3 3.1E-06 6.8E-11 74.0 7.8 125 143-282 2-150 (161)
36 PHA02597 30.2 hypothetical pro 98.2 1.6E-07 3.5E-12 83.0 -0.7 96 181-278 73-173 (197)
37 COG5190 FCP1 TFIIF-interacting 98.2 8.1E-07 1.7E-11 87.7 3.8 137 139-277 23-172 (390)
38 TIGR01686 FkbH FkbH-like domai 98.2 2.4E-06 5.1E-11 82.1 6.4 109 141-265 2-116 (320)
39 PRK08942 D,D-heptose 1,7-bisph 98.2 3.7E-06 8.1E-11 73.8 6.8 117 142-275 3-143 (181)
40 TIGR01549 HAD-SF-IA-v1 haloaci 98.2 7.7E-07 1.7E-11 75.3 2.0 81 181-265 63-147 (154)
41 PHA02530 pseT polynucleotide k 98.2 2E-06 4.3E-11 81.0 5.0 128 140-278 156-295 (300)
42 PF12689 Acid_PPase: Acid Phos 98.1 6.8E-06 1.5E-10 72.8 7.0 118 142-265 3-137 (169)
43 TIGR01672 AphA HAD superfamily 98.1 2.9E-06 6.3E-11 78.9 4.3 133 139-276 60-208 (237)
44 TIGR01664 DNA-3'-Pase DNA 3'-p 98.0 1.6E-05 3.4E-10 69.8 7.5 107 142-262 13-137 (166)
45 PLN02919 haloacid dehalogenase 98.0 3E-06 6.4E-11 93.5 3.4 98 183-280 162-263 (1057)
46 PF13419 HAD_2: Haloacid dehal 98.0 6.9E-06 1.5E-10 69.0 3.9 95 179-274 74-172 (176)
47 COG0546 Gph Predicted phosphat 97.9 9.7E-06 2.1E-10 73.6 4.7 95 181-276 88-186 (220)
48 PRK06698 bifunctional 5'-methy 97.9 4.5E-06 9.8E-11 83.9 2.1 92 181-275 329-423 (459)
49 PRK06769 hypothetical protein; 97.9 1.5E-05 3.3E-10 70.0 5.2 119 142-278 4-136 (173)
50 PLN02770 haloacid dehalogenase 97.9 1.8E-05 3.9E-10 73.1 5.3 97 181-278 107-207 (248)
51 TIGR02253 CTE7 HAD superfamily 97.9 1.4E-05 3.1E-10 71.4 4.3 96 180-276 92-192 (221)
52 TIGR01454 AHBA_synth_RP 3-amin 97.8 2.4E-05 5.1E-10 69.6 4.9 96 181-277 74-173 (205)
53 TIGR01449 PGP_bact 2-phosphogl 97.8 2.1E-05 4.6E-10 69.7 4.3 97 181-278 84-184 (213)
54 PRK05446 imidazole glycerol-ph 97.8 0.00015 3.2E-09 71.3 10.2 138 141-295 1-162 (354)
55 TIGR01668 YqeG_hyp_ppase HAD s 97.8 2.6E-05 5.6E-10 68.4 4.1 111 139-278 22-135 (170)
56 TIGR01428 HAD_type_II 2-haloal 97.8 2.5E-05 5.4E-10 69.0 4.0 94 181-275 91-188 (198)
57 TIGR02254 YjjG/YfnB HAD superf 97.7 3.4E-05 7.4E-10 68.7 4.1 94 181-275 96-194 (224)
58 PRK09456 ?-D-glucose-1-phospha 97.7 3.8E-05 8.2E-10 68.3 4.0 102 180-281 82-187 (199)
59 TIGR01489 DKMTPPase-SF 2,3-dik 97.6 6.1E-05 1.3E-09 65.1 4.8 87 181-268 71-178 (188)
60 PRK10826 2-deoxyglucose-6-phos 97.6 5.5E-05 1.2E-09 68.2 4.6 101 181-282 91-195 (222)
61 PF05152 DUF705: Protein of un 97.6 0.00032 7E-09 66.7 9.6 125 139-286 119-279 (297)
62 TIGR01670 YrbI-phosphatas 3-de 97.6 6.3E-05 1.4E-09 64.9 4.4 111 143-274 2-114 (154)
63 PRK13582 thrH phosphoserine ph 97.6 2.2E-05 4.7E-10 69.5 1.5 94 181-275 67-167 (205)
64 PRK09449 dUMP phosphatase; Pro 97.6 6.4E-05 1.4E-09 67.5 4.3 93 181-274 94-191 (224)
65 TIGR02009 PGMB-YQAB-SF beta-ph 97.6 4E-05 8.7E-10 66.4 2.8 92 181-275 87-182 (185)
66 KOG3109 Haloacid dehalogenase- 97.6 5.3E-05 1.1E-09 69.6 3.6 88 181-270 99-196 (244)
67 PRK11009 aphA acid phosphatase 97.5 0.00028 6E-09 65.7 7.6 131 139-275 60-207 (237)
68 PLN02954 phosphoserine phospha 97.5 4.8E-05 1E-09 68.3 2.4 93 181-275 83-192 (224)
69 TIGR01422 phosphonatase phosph 97.5 0.00011 2.5E-09 67.5 4.7 97 181-278 98-200 (253)
70 TIGR01663 PNK-3'Pase polynucle 97.4 0.0008 1.7E-08 69.4 9.8 214 29-263 45-295 (526)
71 TIGR02247 HAD-1A3-hyp Epoxide 97.3 0.0001 2.3E-09 65.6 2.3 98 181-279 93-196 (211)
72 PRK13222 phosphoglycolate phos 97.3 0.00024 5.1E-09 63.5 4.6 94 181-275 92-189 (226)
73 PRK11133 serB phosphoserine ph 97.3 0.00022 4.7E-09 69.2 4.1 95 181-276 180-288 (322)
74 PRK13478 phosphonoacetaldehyde 97.3 0.0004 8.7E-09 64.6 5.4 98 181-278 100-202 (267)
75 PRK08238 hypothetical protein; 97.3 0.001 2.2E-08 67.9 8.8 90 181-276 71-165 (479)
76 TIGR02252 DREG-2 REG-2-like, H 97.2 0.00034 7.5E-09 61.8 4.3 91 182-274 105-200 (203)
77 TIGR01990 bPGM beta-phosphoglu 97.2 0.00025 5.5E-09 61.3 3.3 91 182-275 87-181 (185)
78 COG1011 Predicted hydrolase (H 97.2 0.00057 1.2E-08 61.0 5.4 93 181-274 98-194 (229)
79 PLN02779 haloacid dehalogenase 97.2 0.00045 9.9E-09 65.5 5.0 98 181-279 143-246 (286)
80 TIGR01689 EcbF-BcbF capsule bi 97.2 0.00096 2.1E-08 56.4 6.2 73 143-232 2-87 (126)
81 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.2 0.00077 1.7E-08 58.9 5.9 94 181-275 79-186 (201)
82 PRK09484 3-deoxy-D-manno-octul 97.2 0.00066 1.4E-08 60.2 5.4 117 140-276 19-136 (183)
83 TIGR01548 HAD-SF-IA-hyp1 haloa 97.1 0.0011 2.3E-08 58.8 6.1 80 184-265 108-191 (197)
84 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.1 0.0012 2.5E-08 60.8 6.1 95 142-262 8-105 (242)
85 TIGR01691 enolase-ppase 2,3-di 97.0 0.00056 1.2E-08 62.9 3.9 95 181-276 94-193 (220)
86 PLN02811 hydrolase 97.0 0.00081 1.8E-08 60.7 4.3 97 181-278 77-183 (220)
87 PRK09552 mtnX 2-hydroxy-3-keto 96.9 0.0039 8.4E-08 56.3 8.0 122 181-313 73-218 (219)
88 KOG2914 Predicted haloacid-hal 96.8 0.00057 1.2E-08 63.1 1.8 101 180-280 90-197 (222)
89 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.0017 3.8E-08 61.4 3.6 119 140-265 73-201 (266)
90 TIGR01493 HAD-SF-IA-v2 Haloaci 96.6 0.00061 1.3E-08 58.7 0.3 77 181-264 89-168 (175)
91 COG0560 SerB Phosphoserine pho 96.6 0.0016 3.4E-08 59.5 2.9 94 181-275 76-185 (212)
92 COG0561 Cof Predicted hydrolas 96.5 0.0084 1.8E-07 55.4 7.2 59 141-222 2-61 (264)
93 PF08645 PNK3P: Polynucleotide 96.4 0.011 2.5E-07 51.5 7.2 104 143-264 1-130 (159)
94 PF13344 Hydrolase_6: Haloacid 96.2 0.0092 2E-07 48.1 5.3 50 145-218 1-51 (101)
95 PRK00192 mannosyl-3-phosphogly 96.2 0.012 2.6E-07 54.9 6.8 58 142-222 4-62 (273)
96 PF09419 PGP_phosphatase: Mito 96.2 0.015 3.2E-07 51.6 6.7 97 137-263 36-147 (168)
97 PF08282 Hydrolase_3: haloacid 96.1 0.011 2.4E-07 52.4 5.8 54 145-221 1-55 (254)
98 COG2179 Predicted hydrolase of 96.1 0.007 1.5E-07 53.6 4.0 102 133-263 19-121 (175)
99 COG0241 HisB Histidinol phosph 96.1 0.0095 2.1E-07 53.4 5.0 126 142-281 5-154 (181)
100 TIGR01487 SPP-like sucrose-pho 96.1 0.017 3.8E-07 51.7 6.7 57 143-222 2-59 (215)
101 TIGR02726 phenyl_P_delta pheny 96.0 0.012 2.6E-07 51.9 5.5 115 141-276 6-122 (169)
102 PRK03669 mannosyl-3-phosphogly 96.0 0.02 4.3E-07 53.4 7.0 59 140-221 5-64 (271)
103 PRK10530 pyridoxal phosphate ( 95.9 0.026 5.7E-07 51.8 7.3 58 142-222 3-61 (272)
104 PTZ00445 p36-lilke protein; Pr 95.9 0.012 2.5E-07 54.2 4.8 132 139-279 40-205 (219)
105 PRK10748 flavin mononucleotide 95.9 0.0057 1.2E-07 56.0 2.7 89 181-275 112-204 (238)
106 PRK10513 sugar phosphate phosp 95.8 0.021 4.6E-07 52.7 6.5 57 142-221 3-60 (270)
107 PRK01158 phosphoglycolate phos 95.8 0.031 6.8E-07 50.1 7.2 58 142-222 3-61 (230)
108 TIGR03333 salvage_mtnX 2-hydro 95.7 0.024 5.2E-07 51.0 6.2 94 180-273 68-177 (214)
109 PRK15126 thiamin pyrimidine py 95.6 0.033 7.1E-07 51.7 6.7 57 143-222 3-60 (272)
110 PRK10976 putative hydrolase; P 95.6 0.033 7.2E-07 51.4 6.6 57 143-222 3-60 (266)
111 TIGR02461 osmo_MPG_phos mannos 95.6 0.031 6.7E-07 51.2 6.3 53 145-221 2-55 (225)
112 TIGR00099 Cof-subfamily Cof su 95.6 0.032 6.9E-07 51.3 6.5 55 145-222 2-57 (256)
113 TIGR02463 MPGP_rel mannosyl-3- 95.4 0.037 8.1E-07 49.6 6.3 54 145-221 2-56 (221)
114 TIGR01544 HAD-SF-IE haloacid d 95.3 0.052 1.1E-06 51.8 7.2 105 180-285 119-248 (277)
115 COG3882 FkbH Predicted enzyme 95.2 0.021 4.5E-07 58.2 4.4 131 139-279 219-355 (574)
116 TIGR01482 SPP-subfamily Sucros 95.0 0.057 1.2E-06 48.2 6.2 54 145-221 1-55 (225)
117 PRK10444 UMP phosphatase; Prov 95.0 0.049 1.1E-06 50.8 5.8 53 143-219 2-55 (248)
118 smart00775 LNS2 LNS2 domain. T 94.9 0.062 1.3E-06 46.7 5.8 62 145-218 2-67 (157)
119 TIGR01484 HAD-SF-IIB HAD-super 94.8 0.058 1.3E-06 47.7 5.5 52 145-218 2-54 (204)
120 TIGR01488 HAD-SF-IB Haloacid D 94.7 0.095 2.1E-06 44.8 6.5 84 181-265 72-171 (177)
121 PTZ00174 phosphomannomutase; P 94.6 0.073 1.6E-06 49.1 6.0 53 141-216 4-57 (247)
122 TIGR01486 HAD-SF-IIB-MPGP mann 94.6 0.093 2E-06 48.4 6.6 54 145-221 2-56 (256)
123 PF11019 DUF2608: Protein of u 94.3 0.059 1.3E-06 50.6 4.7 138 141-279 19-209 (252)
124 COG4502 5'(3')-deoxyribonucleo 94.3 0.086 1.9E-06 45.8 5.1 87 181-282 67-157 (180)
125 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.2 0.075 1.6E-06 46.7 4.8 84 182-266 87-185 (202)
126 PRK12702 mannosyl-3-phosphogly 94.2 0.14 3E-06 49.5 6.9 57 143-222 2-59 (302)
127 PLN02645 phosphoglycolate phos 94.2 0.089 1.9E-06 50.5 5.7 54 141-218 27-81 (311)
128 PRK10187 trehalose-6-phosphate 94.1 0.12 2.5E-06 48.6 6.2 61 140-218 12-74 (266)
129 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.0 0.1 2.2E-06 48.7 5.4 55 143-217 2-57 (257)
130 PRK14502 bifunctional mannosyl 93.8 0.23 5.1E-06 52.8 8.3 60 139-221 413-473 (694)
131 TIGR01452 PGP_euk phosphoglyco 93.8 0.12 2.6E-06 48.6 5.6 43 143-209 3-46 (279)
132 TIGR01456 CECR5 HAD-superfamil 93.7 0.099 2.2E-06 50.4 5.1 53 143-219 1-62 (321)
133 PLN02423 phosphomannomutase 93.5 0.16 3.5E-06 47.1 5.9 55 140-220 5-59 (245)
134 TIGR02137 HSK-PSP phosphoserin 93.4 0.14 3E-06 46.4 5.1 82 181-266 67-158 (203)
135 PF06888 Put_Phosphatase: Puta 93.1 0.13 2.7E-06 48.0 4.5 49 181-230 70-121 (234)
136 TIGR01457 HAD-SF-IIA-hyp2 HAD- 92.9 0.21 4.5E-06 46.3 5.8 54 143-220 2-59 (249)
137 PLN02887 hydrolase family prot 92.9 0.22 4.9E-06 52.1 6.5 59 140-221 306-365 (580)
138 COG0647 NagD Predicted sugar p 92.2 0.27 5.8E-06 46.8 5.5 54 141-218 7-61 (269)
139 TIGR01485 SPP_plant-cyano sucr 92.1 0.29 6.4E-06 44.9 5.5 60 142-221 1-61 (249)
140 COG4359 Uncharacterized conser 91.6 0.52 1.1E-05 42.8 6.3 42 181-222 72-114 (220)
141 TIGR01460 HAD-SF-IIA Haloacid 91.0 0.33 7.2E-06 44.5 4.7 50 145-218 1-55 (236)
142 TIGR01511 ATPase-IB1_Cu copper 89.8 0.78 1.7E-05 47.7 6.7 85 181-275 404-489 (562)
143 TIGR01675 plant-AP plant acid 89.8 0.33 7.1E-06 45.2 3.5 92 140-232 75-172 (229)
144 PLN02151 trehalose-phosphatase 89.5 0.62 1.3E-05 46.1 5.3 60 139-216 95-154 (354)
145 PLN02580 trehalose-phosphatase 89.1 0.7 1.5E-05 46.2 5.4 61 139-217 116-176 (384)
146 COG2503 Predicted secreted aci 88.9 0.24 5.1E-06 46.7 1.8 79 139-218 76-160 (274)
147 PF06941 NT5C: 5' nucleotidase 88.7 0.42 9.2E-06 42.3 3.3 80 181-275 72-158 (191)
148 COG1877 OtsB Trehalose-6-phosp 88.4 0.75 1.6E-05 43.7 4.9 60 139-216 15-76 (266)
149 PLN03017 trehalose-phosphatase 87.2 1.1 2.3E-05 44.6 5.3 60 140-217 109-168 (366)
150 TIGR00685 T6PP trehalose-phosp 86.8 0.64 1.4E-05 42.8 3.4 49 141-207 2-52 (244)
151 PF00702 Hydrolase: haloacid d 86.2 0.86 1.9E-05 39.7 3.7 79 181-263 126-206 (215)
152 TIGR01548 HAD-SF-IA-hyp1 haloa 85.7 0.39 8.3E-06 42.3 1.3 15 144-158 2-16 (197)
153 KOG3085 Predicted hydrolase (H 83.8 0.74 1.6E-05 43.1 2.3 92 180-274 112-208 (237)
154 TIGR02244 HAD-IG-Ncltidse HAD 83.8 1.5 3.2E-05 43.2 4.5 53 178-230 180-240 (343)
155 TIGR02471 sucr_syn_bact_C sucr 83.7 1.6 3.4E-05 39.6 4.4 53 145-221 2-54 (236)
156 KOG3120 Predicted haloacid deh 83.5 1.6 3.5E-05 40.8 4.3 41 181-221 83-125 (256)
157 TIGR01525 ATPase-IB_hvy heavy 83.4 2.3 4.9E-05 44.1 5.9 86 181-275 383-470 (556)
158 PRK11590 hypothetical protein; 83.0 0.67 1.5E-05 41.6 1.6 39 181-219 94-134 (211)
159 PF03767 Acid_phosphat_B: HAD 82.7 1.3 2.7E-05 41.0 3.3 78 140-218 70-152 (229)
160 TIGR02253 CTE7 HAD superfamily 82.5 0.7 1.5E-05 41.0 1.5 16 143-158 3-18 (221)
161 TIGR02252 DREG-2 REG-2-like, H 82.5 0.71 1.5E-05 40.5 1.6 15 143-157 1-15 (203)
162 TIGR01422 phosphonatase phosph 82.4 0.76 1.7E-05 42.1 1.8 16 142-157 2-17 (253)
163 TIGR02009 PGMB-YQAB-SF beta-ph 82.3 0.66 1.4E-05 39.8 1.3 16 143-158 2-17 (185)
164 PRK14501 putative bifunctional 82.2 2.6 5.7E-05 45.1 6.0 61 140-218 490-552 (726)
165 PLN02770 haloacid dehalogenase 82.1 0.74 1.6E-05 42.4 1.6 19 140-158 20-38 (248)
166 PRK10748 flavin mononucleotide 81.5 0.79 1.7E-05 41.9 1.5 16 142-157 10-25 (238)
167 PRK13478 phosphonoacetaldehyde 81.3 0.82 1.8E-05 42.4 1.6 16 142-157 4-19 (267)
168 TIGR01512 ATPase-IB2_Cd heavy 81.2 1.3 2.8E-05 45.8 3.1 88 180-276 360-449 (536)
169 PF05116 S6PP: Sucrose-6F-phos 80.8 2.3 5.1E-05 39.4 4.5 55 141-219 1-57 (247)
170 TIGR01454 AHBA_synth_RP 3-amin 79.4 0.71 1.5E-05 40.7 0.5 14 145-158 1-14 (205)
171 TIGR01990 bPGM beta-phosphoglu 79.3 0.78 1.7E-05 39.4 0.7 15 144-158 1-15 (185)
172 PLN02779 haloacid dehalogenase 79.2 1.1 2.5E-05 42.4 1.8 18 140-157 38-55 (286)
173 TIGR01449 PGP_bact 2-phosphogl 77.8 0.85 1.8E-05 40.1 0.5 14 145-158 1-14 (213)
174 PF12710 HAD: haloacid dehalog 77.6 3.4 7.4E-05 35.4 4.2 81 183-264 86-187 (192)
175 TIGR02247 HAD-1A3-hyp Epoxide 77.1 1.4 3E-05 39.0 1.7 15 143-157 3-17 (211)
176 TIGR02254 YjjG/YfnB HAD superf 77.0 1.2 2.7E-05 39.3 1.3 16 143-158 2-17 (224)
177 TIGR01493 HAD-SF-IA-v2 Haloaci 77.0 1.1 2.5E-05 38.2 1.1 13 145-157 2-14 (175)
178 PRK11590 hypothetical protein; 76.9 3.6 7.8E-05 36.9 4.3 17 141-157 5-21 (211)
179 TIGR01428 HAD_type_II 2-haloal 76.3 1.3 2.8E-05 38.8 1.2 15 143-157 2-16 (198)
180 TIGR01491 HAD-SF-IB-PSPlk HAD- 76.1 1.5 3.2E-05 38.0 1.6 16 142-157 4-19 (201)
181 PRK10826 2-deoxyglucose-6-phos 76.1 1.6 3.4E-05 39.1 1.7 17 141-157 6-22 (222)
182 PLN02382 probable sucrose-phos 76.0 7.1 0.00015 39.2 6.5 18 139-156 6-23 (413)
183 PRK09449 dUMP phosphatase; Pro 75.4 1.4 3E-05 39.3 1.2 15 142-156 3-17 (224)
184 TIGR01680 Veg_Stor_Prot vegeta 74.9 4 8.8E-05 39.0 4.2 91 141-232 100-197 (275)
185 PRK13222 phosphoglycolate phos 74.4 1.7 3.8E-05 38.4 1.6 16 142-157 6-21 (226)
186 TIGR01545 YfhB_g-proteo haloac 73.6 7.7 0.00017 35.1 5.6 38 181-218 93-132 (210)
187 PF13419 HAD_2: Haloacid dehal 71.5 1.8 4E-05 35.8 0.9 14 145-158 1-14 (176)
188 PF08235 LNS2: LNS2 (Lipin/Ned 69.4 12 0.00026 32.9 5.6 62 145-218 2-64 (157)
189 PF02358 Trehalose_PPase: Treh 68.7 6.3 0.00014 35.9 3.9 51 146-214 1-53 (235)
190 COG3769 Predicted hydrolase (H 68.6 14 0.00031 34.6 6.2 58 142-223 7-65 (274)
191 PLN02205 alpha,alpha-trehalose 66.0 12 0.00025 41.4 5.9 59 140-218 594-654 (854)
192 PLN03063 alpha,alpha-trehalose 65.4 13 0.00029 40.5 6.2 64 140-218 505-570 (797)
193 PRK09552 mtnX 2-hydroxy-3-keto 62.5 4.1 8.9E-05 36.5 1.4 16 142-157 3-18 (219)
194 PLN03064 alpha,alpha-trehalose 62.3 16 0.00035 40.6 6.2 70 140-218 589-660 (934)
195 PF05822 UMPH-1: Pyrimidine 5' 60.5 9.7 0.00021 35.9 3.5 100 179-278 87-210 (246)
196 PRK09456 ?-D-glucose-1-phospha 58.7 5.3 0.00011 35.2 1.4 14 144-157 2-15 (199)
197 COG1011 Predicted hydrolase (H 57.7 6.2 0.00013 34.9 1.7 18 141-158 3-20 (229)
198 TIGR01545 YfhB_g-proteo haloac 57.5 5.7 0.00012 35.9 1.4 17 141-157 4-20 (210)
199 PRK10671 copA copper exporting 52.0 14 0.00031 40.3 3.6 86 181-275 649-735 (834)
200 TIGR02137 HSK-PSP phosphoserin 50.3 8.1 0.00018 34.8 1.2 15 144-158 3-17 (203)
201 PF08484 Methyltransf_14: C-me 49.0 47 0.001 29.0 5.8 66 183-279 53-120 (160)
202 KOG4549 Magnesium-dependent ph 47.0 98 0.0021 26.7 7.1 121 141-263 4-133 (144)
203 PF12710 HAD: haloacid dehalog 46.6 9.9 0.00021 32.5 1.1 13 145-157 1-13 (192)
204 TIGR01488 HAD-SF-IB Haloacid D 46.5 9.3 0.0002 32.3 0.9 13 145-157 2-14 (177)
205 TIGR01490 HAD-SF-IB-hyp1 HAD-s 43.9 11 0.00024 32.9 1.0 13 145-157 2-14 (202)
206 COG4229 Predicted enolase-phos 43.3 20 0.00044 32.7 2.6 92 181-274 102-199 (229)
207 cd06537 CIDE_N_B CIDE_N domain 43.2 50 0.0011 26.0 4.4 16 142-157 39-54 (81)
208 cd06539 CIDE_N_A CIDE_N domain 42.1 52 0.0011 25.7 4.3 16 142-157 40-55 (78)
209 smart00266 CAD Domains present 38.2 61 0.0013 25.1 4.2 16 142-157 38-53 (74)
210 cd02514 GT13_GLCNAC-TI GT13_GL 37.8 48 0.001 32.6 4.5 102 179-280 6-139 (334)
211 KOG3189 Phosphomannomutase [Li 37.3 51 0.0011 30.6 4.2 44 140-206 9-52 (252)
212 cd01615 CIDE_N CIDE_N domain, 36.8 67 0.0015 25.1 4.3 17 141-157 39-55 (78)
213 cd06536 CIDE_N_ICAD CIDE_N dom 36.8 67 0.0015 25.2 4.3 17 141-157 41-57 (80)
214 PLN02177 glycerol-3-phosphate 36.2 27 0.00058 36.2 2.6 23 199-221 124-147 (497)
215 cd06538 CIDE_N_FSP27 CIDE_N do 34.8 67 0.0015 25.2 4.0 16 142-157 39-54 (79)
216 PF00702 Hydrolase: haloacid d 34.4 22 0.00047 30.7 1.4 16 143-158 2-17 (215)
217 COG1778 Low specificity phosph 33.2 45 0.00098 29.7 3.1 117 140-277 6-124 (170)
218 TIGR02826 RNR_activ_nrdG3 anae 33.0 62 0.0013 27.8 3.9 63 183-260 73-137 (147)
219 PF02017 CIDE-N: CIDE-N domain 32.3 48 0.001 25.9 2.8 17 141-157 39-55 (78)
220 TIGR01459 HAD-SF-IIA-hyp4 HAD- 31.5 6.7 0.00014 35.9 -2.5 89 184-274 140-236 (242)
221 PF06941 NT5C: 5' nucleotidase 30.2 29 0.00064 30.4 1.5 16 142-157 2-17 (191)
222 KOG2134 Polynucleotide kinase 30.1 77 0.0017 32.1 4.5 57 140-207 73-130 (422)
223 PLN02499 glycerol-3-phosphate 29.0 37 0.0008 35.2 2.2 23 199-221 110-133 (498)
224 KOG1615 Phosphoserine phosphat 28.0 1.3E+02 0.0028 27.9 5.2 83 182-265 88-186 (227)
225 PRK14010 potassium-transportin 23.3 73 0.0016 34.3 3.2 41 182-222 441-482 (673)
226 TIGR01458 HAD-SF-IIA-hyp3 HAD- 23.0 13 0.00029 34.5 -2.1 91 185-276 123-221 (257)
227 PF05761 5_nucleotid: 5' nucle 22.7 1.4E+02 0.0031 30.5 5.1 53 178-230 179-240 (448)
228 KOG3040 Predicted sugar phosph 21.7 1.4E+02 0.0031 28.0 4.3 55 141-219 6-61 (262)
229 cd06535 CIDE_N_CAD CIDE_N doma 20.0 1.9E+02 0.0041 22.6 4.1 13 142-154 40-52 (77)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=3.7e-50 Score=374.06 Aligned_cols=185 Identities=49% Similarity=0.866 Sum_probs=176.2
Q ss_pred CCCCCCCCCCCCCCeEEEEeCCcceecee--cCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCC
Q 021254 129 WPRTPLREPIAGLPITLVLDLDETLVHSS--FDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAG 206 (315)
Q Consensus 129 ~~~llP~~~~~~~k~tLVLDLDeTLVhs~--~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas 206 (315)
...++|......+|++||||||||||||+ .++...+++.+++.+++..+.+||.+|||+++||++++++||++||||+
T Consensus 76 ~~~~~~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs 155 (262)
T KOG1605|consen 76 LSPVLPLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTAS 155 (262)
T ss_pred ccccCCcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhh
Confidence 34455666668999999999999999999 6777889999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeeccccCCCCChH
Q 021254 207 QSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSDSA 286 (315)
Q Consensus 207 ~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d~~D~e 286 (315)
.+.||++|++.||+.+++|.+|+||++|...+|+|+|||+.+|+|+++||||||+|.+|++||+|||||++|++|+.|+|
T Consensus 156 ~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~e 235 (262)
T KOG1605|consen 156 LEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTE 235 (262)
T ss_pred hHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCChHHHHHhhhcC
Q 021254 287 LLSLLMFLETLVGADDVRPIIKQKYGS 313 (315)
Q Consensus 287 Ll~L~~~L~~L~~~~DVR~~l~~~f~~ 313 (315)
|++|+|||++|+.++|||++++++|+.
T Consensus 236 LL~LlpfLe~L~~~~Dvr~~l~~~~~~ 262 (262)
T KOG1605|consen 236 LLKLLPFLEALAFVDDVRPILARRFGN 262 (262)
T ss_pred HHHHHHHHHHhcccccHHHHHHHhhcC
Confidence 999999999999999999999999874
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=3.6e-42 Score=300.27 Aligned_cols=161 Identities=52% Similarity=0.890 Sum_probs=153.4
Q ss_pred CeEEEEeCCcceeceecCCCC-CCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCK-DADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~-~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
|+||||||||||||++..+.. .+++.+.+..++....+||++|||+.+||++|+++|+|+|||++.+.||++++++|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 689999999999999987765 6788888887888889999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeeccccCCCCChHHHHHHHHHhhccCC
Q 021254 221 NQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETLVGA 300 (315)
Q Consensus 221 ~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d~~D~eLl~L~~~L~~L~~~ 300 (315)
.+.+|++++||++|...+|.|.|||+.+|+++++||+|||+|..|..|++|||+|.+|.|+.+|++|++|++||+.|+.+
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 021254 301 DD 302 (315)
Q Consensus 301 ~D 302 (315)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=4.8e-40 Score=283.04 Aligned_cols=158 Identities=50% Similarity=0.818 Sum_probs=130.5
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQ 222 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~ 222 (315)
|+|||||||||||+...+....++... .....++|++|||+++||++|+++|+|+|||++++.||++|++.|+|.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~----~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKII----DQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEE----TEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred CEEEEeCCCcEEEEeecCCCCccccee----ccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 689999999999998765543333222 2567789999999999999999999999999999999999999999988
Q ss_pred CeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeeccccCC-CCChHHHHHHHHHhhccCCC
Q 021254 223 TLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGD-PSDSALLSLLMFLETLVGAD 301 (315)
Q Consensus 223 ~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d-~~D~eLl~L~~~L~~L~~~~ 301 (315)
.+|.++++|++|...+|.+.|||+.+|+++++||+|||+|.+|..+++|+|+|++|.++ ..|++|.+|++||++|+.++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~~ 156 (159)
T PF03031_consen 77 KLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKED 156 (159)
T ss_dssp SSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTHS
T ss_pred cccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCccc
Confidence 89999999999999888889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChH
Q 021254 302 DVR 304 (315)
Q Consensus 302 DVR 304 (315)
|||
T Consensus 157 Dvr 159 (159)
T PF03031_consen 157 DVR 159 (159)
T ss_dssp -CH
T ss_pred CCC
Confidence 998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=3e-38 Score=283.72 Aligned_cols=158 Identities=23% Similarity=0.309 Sum_probs=136.3
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHh
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~L 218 (315)
..+|++|||||||||||+.... .++++.+|||+++||++|+++|||+||||+++.||+.+++.|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~----------------~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPA----------------ETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCCcEEEEeCCCceEcccccC----------------CCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 5788999999999999974321 145788999999999999999999999999999999999999
Q ss_pred CCCC-CeeeeEEEecceee------eCCc-cccccccc------CCCCCcEEEEECCchhhccCCCCeeeeccccC----
Q 021254 219 DPNQ-TLIGQRVYRDSCVF------ADGE-YLKDLTIL------GRDLARIAIVDNTPQVFQLQVDNGIPIESWFG---- 280 (315)
Q Consensus 219 Dp~~-~~f~~rl~Re~C~~------~~g~-y~KDL~~L------grdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~---- 280 (315)
++.. .-+..++++++|.+ ..|. ++|||+.+ ++++++||||||+|.++.+||+|||+|++|++
T Consensus 82 ~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~ 161 (195)
T TIGR02245 82 GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHAN 161 (195)
T ss_pred cccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCC
Confidence 7643 23556667788842 3455 59999987 34889999999999999999999999999995
Q ss_pred CCCChHHHHHHHHHhhccCCCChHHHHHhhhc
Q 021254 281 DPSDSALLSLLMFLETLVGADDVRPIIKQKYG 312 (315)
Q Consensus 281 d~~D~eLl~L~~~L~~L~~~~DVR~~l~~~f~ 312 (315)
+..|++|++|+|||+.|+.++|||++.+++|.
T Consensus 162 ~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~ 193 (195)
T TIGR02245 162 RGTDQELLKLTQYLKTIAELEDFSSLDHKEWE 193 (195)
T ss_pred CcccHHHHHHHHHHHHHhcCcccchhhhcccc
Confidence 57999999999999999999999999999885
No 5
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.9e-33 Score=267.16 Aligned_cols=169 Identities=31% Similarity=0.601 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCC--C-CCCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEE
Q 021254 125 APSYWPRTPLRE--P-IAGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVV 201 (315)
Q Consensus 125 ~~~~~~~llP~~--~-~~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIv 201 (315)
.++..+.|+|+. + ..++++||||+|.++|||..|. ...++.+++|||++.||..++++||||
T Consensus 169 ~EP~~~~LLPdpl~pPy~Qp~yTLVleledvLVhpdws---------------~~tGwRf~kRPgvD~FL~~~a~~yEIV 233 (393)
T KOG2832|consen 169 KEPDRAKLLPDPLPPPYEQPPYTLVLELEDVLVHPDWS---------------YKTGWRFKKRPGVDYFLGHLAKYYEIV 233 (393)
T ss_pred cCCchhhhCCCCCCCcccCCCceEEEEeeeeEeccchh---------------hhcCceeccCchHHHHHHhhcccceEE
Confidence 455667777763 3 3499999999999999999774 235778999999999999999999999
Q ss_pred EEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeeccccCC
Q 021254 202 IFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGD 281 (315)
Q Consensus 202 IfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d 281 (315)
|||+.+..||.+|++.|||+| +|+++|+|++|.+.+|.++|||+.|+||+++||+||-.+.++..||+|+|++++|.|+
T Consensus 234 i~sse~gmt~~pl~d~lDP~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn 312 (393)
T KOG2832|consen 234 VYSSEQGMTVFPLLDALDPKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGN 312 (393)
T ss_pred EEecCCccchhhhHhhcCCcc-eEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCC
Confidence 999999999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhhccC--CCChHHHHHh
Q 021254 282 PSDSALLSLLMFLETLVG--ADDVRPIIKQ 309 (315)
Q Consensus 282 ~~D~eLl~L~~~L~~L~~--~~DVR~~l~~ 309 (315)
.+|+.|++|++||+.|+. ++|||++|+.
T Consensus 313 ~dDt~L~dL~~FL~~ia~~~~eDvR~vL~~ 342 (393)
T KOG2832|consen 313 DDDTSLFDLLAFLEYIAQQQVEDVRPVLQS 342 (393)
T ss_pred cccchhhhHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999999885 5799999985
No 6
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.98 E-value=4.9e-32 Score=235.67 Aligned_cols=138 Identities=26% Similarity=0.457 Sum_probs=116.5
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCcee------------eeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCC
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSF------------PIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAG 206 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~------------~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas 206 (315)
.++|++||||||+|||||+..+........ ...+.......++++|||+.+||++|++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 478999999999999999876543221110 01122224668999999999999999999999999999
Q ss_pred chhhHHHHHHHhCCCCCeeeeE-EEecceeeeCCccccccc-ccCCCCCcEEEEECCchhhccCCCCeeeecccc
Q 021254 207 QSIYAGQLLDILDPNQTLIGQR-VYRDSCVFADGEYLKDLT-ILGRDLARIAIVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 207 ~~~YA~~vL~~LDp~~~~f~~r-l~Re~C~~~~g~y~KDL~-~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
.+.||+++++.|||.+.+|.++ ++|++|. |.+.|||+ .+|++++++|||||+|.+|..||+|+|+|++|.
T Consensus 83 ~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred cHHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 9999999999999998899665 5799995 78999995 569999999999999999999999999999995
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.96 E-value=3.3e-29 Score=244.20 Aligned_cols=173 Identities=40% Similarity=0.697 Sum_probs=164.4
Q ss_pred CCCCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHH
Q 021254 137 PIAGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 137 ~~~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~ 216 (315)
....++++|++|||+||+||....+...+|...+...+..+.+||.+||++++||..++++|++++||++.+.||++|++
T Consensus 207 ~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d 286 (390)
T COG5190 207 KSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLD 286 (390)
T ss_pred cCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHH
Confidence 34588999999999999999988888888888888888889999999999999999999999999999999999999999
Q ss_pred HhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeeccccCCCCChHHHHHHHHHhh
Q 021254 217 ILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSDSALLSLLMFLET 296 (315)
Q Consensus 217 ~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d~~D~eLl~L~~~L~~ 296 (315)
.|++.+ .|.+++||++|....|.|+|||..+||++.+|||||++|.+|.++|+|+|+|++|.+++.|.+|++|+++|+.
T Consensus 287 ~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~le~ 365 (390)
T COG5190 287 ILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPFLED 365 (390)
T ss_pred hccccc-eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhcccccc
Confidence 999998 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--CCChHHHHHhh
Q 021254 297 LVG--ADDVRPIIKQK 310 (315)
Q Consensus 297 L~~--~~DVR~~l~~~ 310 (315)
|.. ..||+..+..+
T Consensus 366 L~~~~~~d~~~~l~~~ 381 (390)
T COG5190 366 LPDRDLKDVSSILQSR 381 (390)
T ss_pred cccccchhhhhhhhhh
Confidence 998 77999988754
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.96 E-value=4.3e-28 Score=207.94 Aligned_cols=145 Identities=44% Similarity=0.853 Sum_probs=130.5
Q ss_pred CCeEEEEeCCcceeceecCC---CCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHH
Q 021254 141 LPITLVLDLDETLVHSSFDN---CKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~---~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~ 217 (315)
+|++|||||||||+|+.... ....++...+.+.+....+++++|||+.+||++|++.|+++|||++.+.||+.++++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 58999999999999996422 223445566667788889999999999999999999999999999999999999999
Q ss_pred hCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeeccccCCCCCh
Q 021254 218 LDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSDS 285 (315)
Q Consensus 218 LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d~~D~ 285 (315)
+++.+.+|..++++++|...++.|.|+|+.+|++++++|+|||++..|..++.|||.|++|.++.+|+
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99976567999999999998888999999999999999999999999999999999999999999884
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.75 E-value=2.5e-18 Score=176.35 Aligned_cols=137 Identities=26% Similarity=0.420 Sum_probs=107.0
Q ss_pred CCCeEEEEeCCcceeceecCCCC--------CCCc-------eeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEc
Q 021254 140 GLPITLVLDLDETLVHSSFDNCK--------DADF-------SFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFT 204 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~--------~~d~-------~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfT 204 (315)
++++.||+|||.||+|+...+.- +... .+.+...+....+||++||++++||++++++||++|||
T Consensus 144 ~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyT 223 (635)
T KOG0323|consen 144 RKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYT 223 (635)
T ss_pred hhcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEe
Confidence 44469999999999999863221 0000 01111113344689999999999999999999999999
Q ss_pred CCchhhHHHHHHHhCCCCCeeeeEEE-ecceeeeCCccccccccc-CCCCCcEEEEECCchhhccCCCCeeeecccc
Q 021254 205 AGQSIYAGQLLDILDPNQTLIGQRVY-RDSCVFADGEYLKDLTIL-GRDLARIAIVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 205 as~~~YA~~vL~~LDp~~~~f~~rl~-Re~C~~~~g~y~KDL~~L-grdl~~vIIIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
.|.+.||..|++.|||.++||++|++ |+. ....-.+||..+ .++.+++|||||+..+|..++.|.|.|.+|.
T Consensus 224 mg~R~YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 224 MGTRDYALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred ccchHHHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 99999999999999999999998876 666 122335666666 5677889999999999999999999999983
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.92 E-value=4e-09 Score=93.62 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=94.4
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecC---eeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC-chhhHHHHHHH
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKM---EVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG-QSIYAGQLLDI 217 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~---~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas-~~~YA~~vL~~ 217 (315)
..+|||||+||+.......-+..+.-.-...+ .....-+.++||+.++|+.|. +.+.+.|.|++ ...++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 47899999999987653332222210000111 112334778999999999998 67999999998 99999999999
Q ss_pred hCCC--C------CeeeeEEEecceeeeCC--ccccccccc---CCCCCcEEEEECCchhhccCCCCeeeecccc
Q 021254 218 LDPN--Q------TLIGQRVYRDSCVFADG--EYLKDLTIL---GRDLARIAIVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 218 LDp~--~------~~f~~rl~Re~C~~~~g--~y~KDL~~L---grdl~~vIIIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
++.. + .+|+.++..+.....+. ...+.+... |.+++++++|||++........+|+.+....
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~ 157 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCP 157 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcC
Confidence 9865 1 37888777554211111 112223222 5889999999999999888889999887663
No 11
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.73 E-value=6.7e-09 Score=87.09 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=77.3
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC-chhhHHHHHHHhCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG-QSIYAGQLLDILDP 220 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas-~~~YA~~vL~~LDp 220 (315)
+.+|+||||||+..-..... .+-.+.+ . ...||+.++|++++ +.+.++|.|++ .+.++..+++...+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~-~~~~~~~-------~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVG-EDPIIDL-------E---VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCccccc-CCcchhh-------H---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc
Confidence 46899999999987321000 0000000 0 46899999999998 57999999999 89999999998762
Q ss_pred ------CCCeeeeEEEecceeeeCCcccccccccC--CCCCcEEEEECCchhh
Q 021254 221 ------NQTLIGQRVYRDSCVFADGEYLKDLTILG--RDLARIAIVDNTPQVF 265 (315)
Q Consensus 221 ------~~~~f~~rl~Re~C~~~~g~y~KDL~~Lg--rdl~~vIIIDDsp~~~ 265 (315)
-..+|......+... ....+.+-+..+| ..++++++|||++...
T Consensus 70 ~~~i~~l~~~f~~~~~~~~~p-kp~~~~~a~~~lg~~~~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGYWLP-KSPRLVEIALKLNGVLKPKSILFVDDRPDNN 121 (128)
T ss_pred cccchhhHhhhhhhhhcCCCc-HHHHHHHHHHHhcCCCCcceEEEECCCHhHH
Confidence 122565555443311 1123677778889 9999999999998753
No 12
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.68 E-value=9.8e-09 Score=91.95 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=81.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|++|+ +.+.++|.|++.+.++..+++.++-.. +|+..+..+++...+. .|.+-++.+|.++++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 567899999999998 579999999999999999999998876 8999888777655443 46777888899999999
Q ss_pred EEECCchhhccCCCCeeeecc
Q 021254 257 IVDNTPQVFQLQVDNGIPIES 277 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~ 277 (315)
+|+|++.-+.....+|++.-.
T Consensus 160 ~iGDs~~Di~aa~~aG~~~i~ 180 (214)
T PRK13288 160 MVGDNHHDILAGKNAGTKTAG 180 (214)
T ss_pred EECCCHHHHHHHHHCCCeEEE
Confidence 999999888777788887654
No 13
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.66 E-value=1.3e-08 Score=95.34 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=84.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|+.|+ ..+.++|.|++...++..+++.++... +|+.++..+.+...+. .|.+-+..+|.++++++
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 557899999999999 579999999999999999999998776 8999999888765554 37888899999999999
Q ss_pred EEECCchhhccCCCCeeeecccc
Q 021254 257 IVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
+|+|++.-.......|+.+....
T Consensus 187 ~IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 187 VFGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEe
Confidence 99999998877778888765443
No 14
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.59 E-value=1.9e-08 Score=91.82 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=79.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|+.|. +.+.++|-|++.+.++...++.++... +|+.++..++....+. .|.+-+..+|.++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 567899999999999 579999999999999999999987765 7998887776554444 37788889999999999
Q ss_pred EEECCchhhccCCCCeee
Q 021254 257 IVDNTPQVFQLQVDNGIP 274 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~ 274 (315)
+|+|++........+|+.
T Consensus 171 ~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEcCCHHHHHHHHHcCCe
Confidence 999999988777788886
No 15
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.55 E-value=3.3e-08 Score=86.54 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=74.9
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceee----eCC---cccccccccCCCCC
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVF----ADG---EYLKDLTILGRDLA 253 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~----~~g---~y~KDL~~Lgrdl~ 253 (315)
+...||+.++|++|+ +.++|.|++...++..+++.++... +|+.++..++... .+. .|.+-+..+|.+++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 446799999999998 6899999999999999999998765 8998888766443 132 47777888999999
Q ss_pred cEEEEECCchhhccCCCCeeee
Q 021254 254 RIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 254 ~vIIIDDsp~~~~~q~~NgI~I 275 (315)
++++|+|++.........|+..
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCEE
Confidence 9999999998776666666653
No 16
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.53 E-value=5.1e-08 Score=84.01 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=73.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|++++ ..+.++|.|++...+ ..++..++..+ +|...++.+++...+. .|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 567899999999998 579999999999998 66766677765 7988888776655553 36777788899999999
Q ss_pred EEECCchhhccCCCCeee
Q 021254 257 IVDNTPQVFQLQVDNGIP 274 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~ 274 (315)
+|+|++.........|+.
T Consensus 162 ~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred EEcCCHHHHHHHHHcCCE
Confidence 999999876555556654
No 17
>PRK11587 putative phosphatase; Provisional
Probab=98.52 E-value=7.4e-08 Score=86.87 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|+.|. +.+.++|-|++...++..+++..... +|...+..+++...++ .|.+-+..+|..++++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 567899999999998 67999999999999888888877653 4666666666554444 37888889999999999
Q ss_pred EEECCchhhccCCCCeeeecccc
Q 021254 257 IVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
+|+|++.-.......|+..-.+.
T Consensus 160 ~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 160 VVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred EEecchhhhHHHHHCCCEEEEEC
Confidence 99999988777777887755443
No 18
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.52 E-value=6.6e-08 Score=88.15 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=78.7
Q ss_pred eEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcE
Q 021254 180 FVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARI 255 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~v 255 (315)
.+...||+.++|++|+ +.+.++|-|++...++..+++.++... +|...+..+++...+. .|.+-++.+|.+++++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 3678999999999998 569999999999999999999998765 7887777676554443 3778888899999999
Q ss_pred EEEECCchhhccCCCCeeeec
Q 021254 256 AIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 256 IIIDDsp~~~~~q~~NgI~I~ 276 (315)
++|+|++.-.......|+..-
T Consensus 172 l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 172 VYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred EEeCCCHHHHHHHHHCCCcEE
Confidence 999999987766666677654
No 19
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.51 E-value=4.5e-07 Score=77.13 Aligned_cols=137 Identities=18% Similarity=0.058 Sum_probs=97.8
Q ss_pred EEEEeCCcceeceecCCCCCCCceeeeeecC--eeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCC
Q 021254 144 TLVLDLDETLVHSSFDNCKDADFSFPIHSKM--EVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 144 tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~--~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
.+|||+|+||++.-....-.+.|+- +..+. ...+.-|.++|++.+||+++. ..|-+..+|.....-|-++|.++|.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~r-Vs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~ 80 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRR-VSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDL 80 (164)
T ss_pred cEEEeCCCcccccccchhcCCccee-cCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhch
Confidence 5799999999986432222222221 11111 234566899999999999999 6899999999999999999999999
Q ss_pred CCCeeeeEEEecceeeeCCccccccccc------CCCCCcEEEEECCchhh---ccCCCCeeeeccccCCCC
Q 021254 221 NQTLIGQRVYRDSCVFADGEYLKDLTIL------GRDLARIAIVDNTPQVF---QLQVDNGIPIESWFGDPS 283 (315)
Q Consensus 221 ~~~~f~~rl~Re~C~~~~g~y~KDL~~L------grdl~~vIIIDDsp~~~---~~q~~NgI~I~~f~~d~~ 283 (315)
.. ||.+.+...| .+..-+..+-|..+ ...++++|.+||+...+ +....|.=+++.|.+-+.
T Consensus 81 ~~-yFhy~ViePh-P~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di~c 150 (164)
T COG4996 81 LQ-YFHYIVIEPH-PYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDISC 150 (164)
T ss_pred hh-hEEEEEecCC-ChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecchHH
Confidence 87 8988777655 11111222333332 45788999999998866 457889999999986643
No 20
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.50 E-value=2e-08 Score=87.61 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=79.0
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc---ccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE---YLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~---y~KDL~~Lgrdl~~vII 257 (315)
+..-|++ +.|+.+.+.+.++|-|++...+++.+++.++-.+ +|+.++..+++...+.. |..-++++|.+++++|+
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 3455764 8999998778999999999999999999998875 89999998887665553 67888889999999999
Q ss_pred EECCchhhccCCCCeeeecc
Q 021254 258 VDNTPQVFQLQVDNGIPIES 277 (315)
Q Consensus 258 IDDsp~~~~~q~~NgI~I~~ 277 (315)
|+|++.-+.....+|++.-.
T Consensus 165 igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred EeccHhhHHHHHHCCCEEEe
Confidence 99999888777777776543
No 21
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.49 E-value=1.7e-07 Score=77.86 Aligned_cols=115 Identities=23% Similarity=0.173 Sum_probs=79.6
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCc--------hhhHHH
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQ--------SIYAGQ 213 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~--------~~YA~~ 213 (315)
+.++||+||||++... ... ........|++.++|++|. +.+.++|.|++. ..++..
T Consensus 1 k~~~~D~dgtL~~~~~--~~~-------------~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~ 65 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVP--YVD-------------DEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVAR 65 (132)
T ss_pred CEEEEeCCCceecCCC--CCC-------------CHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHH
Confidence 4689999999996411 000 0012346899999999998 679999999999 888999
Q ss_pred HHHHhCCCCCeeeeEEEecceee-eCCccccccccc-CCCCCcEEEEEC-CchhhccCCCCeeee
Q 021254 214 LLDILDPNQTLIGQRVYRDSCVF-ADGEYLKDLTIL-GRDLARIAIVDN-TPQVFQLQVDNGIPI 275 (315)
Q Consensus 214 vL~~LDp~~~~f~~rl~Re~C~~-~~g~y~KDL~~L-grdl~~vIIIDD-sp~~~~~q~~NgI~I 275 (315)
+++.++.. +...++...+.. ....|.+-++.+ +.+++++++|+| +..-......+|+..
T Consensus 66 ~l~~~~l~---~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 66 RLEELGVP---IDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred HHHHCCCC---EEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeE
Confidence 99998764 222233331111 112466777888 599999999999 676665555666543
No 22
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.49 E-value=4.4e-08 Score=92.44 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=74.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVD 259 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIID 259 (315)
+...||+.++|++|. +.+.++|.|++...++..+++.++... +|..++..+........+.+-+..+|.+++++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 456799999999998 679999999999999999999998865 788766544322111234555667788999999999
Q ss_pred CCchhhccCCCCeeeecc
Q 021254 260 NTPQVFQLQVDNGIPIES 277 (315)
Q Consensus 260 Dsp~~~~~q~~NgI~I~~ 277 (315)
|++.-.......|+....
T Consensus 220 Ds~~Di~aA~~AG~~~I~ 237 (273)
T PRK13225 220 DETRDVEAARQVGLIAVA 237 (273)
T ss_pred CCHHHHHHHHHCCCeEEE
Confidence 999877666667777643
No 23
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.48 E-value=4.4e-08 Score=96.71 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=84.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.+||+.|. +.+.++|-|++...+++.+++.++..+ ||+.++..+++...+. .|.+-+..+|.+++++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 456799999999998 679999999999999999999998876 8999999888765554 47888899999999999
Q ss_pred EEECCchhhccCCCCeeeecccc
Q 021254 257 IVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
+|+|++.........|+......
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEC
Confidence 99999998877777777665553
No 24
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.48 E-value=3.6e-08 Score=90.05 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=88.3
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc---ccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVASM-FDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE---YLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~-fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~---y~KDL~~Lgrdl~~vI 256 (315)
+...||+.+||+.|.+. ..+++-|++.+..+..+++.++..+ +|..+++.++....+.. |++-+..||.++++||
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 67899999999999965 9999999999999999999999886 89999999888777653 8999999999999999
Q ss_pred EEECCchhhccCCCCeeeeccccC
Q 021254 257 IVDNTPQVFQLQVDNGIPIESWFG 280 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f~~ 280 (315)
+|+|++.-......-|+.+-.+.+
T Consensus 164 viEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EEecchhHHHHHHHCCCEEEEecC
Confidence 999999988777777887777765
No 25
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.45 E-value=2e-06 Score=82.22 Aligned_cols=127 Identities=18% Similarity=0.161 Sum_probs=92.4
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeC-chHHHHHHHhh-cccEEEEEcCCchhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQR-PYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lR-P~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~ 216 (315)
...++.+|+||||||+..... |..| |++.++|++|+ +++.++|+|++.++++..+++
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~~---------------------v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le 183 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEEP---------------------VRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLK 183 (303)
T ss_pred eeeccEEEEecCCCccCCCCc---------------------cccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 367789999999999998431 4478 99999999999 579999999999999999999
Q ss_pred HhCCCCCeeeeEEEecceeeeC----------------Cccccccc-----------------ccCCCCC-cEEEEECCc
Q 021254 217 ILDPNQTLIGQRVYRDSCVFAD----------------GEYLKDLT-----------------ILGRDLA-RIAIVDNTP 262 (315)
Q Consensus 217 ~LDp~~~~f~~rl~Re~C~~~~----------------g~y~KDL~-----------------~Lgrdl~-~vIIIDDsp 262 (315)
.++..+ +|...+..++..... ..+..|.. ..|...- -+.+|||-+
T Consensus 184 ~lgL~~-yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 184 ETKLEG-YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred HcCCCc-cccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 999875 787777655543322 12233333 2344443 467899988
Q ss_pred hhhccCCCCeeeeccccCCCCChHHH
Q 021254 263 QVFQLQVDNGIPIESWFGDPSDSALL 288 (315)
Q Consensus 263 ~~~~~q~~NgI~I~~f~~d~~D~eLl 288 (315)
..= +.-+|-+.++..-...+|...-
T Consensus 263 ~Nn-~~YD~fv~v~rcp~P~~DW~~~ 287 (303)
T PHA03398 263 SNN-YSYDYFVNVKRCPEPVNDWDKY 287 (303)
T ss_pred ccC-ccceeEEEeeeCCCCcHHHHHH
Confidence 642 4568888888877666665543
No 26
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.42 E-value=2.5e-07 Score=74.12 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=75.5
Q ss_pred EEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCC
Q 021254 144 TLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQ 222 (315)
Q Consensus 144 tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~ 222 (315)
++|||+||||+........ ...+..+|++.++|+++.+ .+.++|.|++...++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred CeEEccCCceEccCccccc---------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 4799999999987532110 1235679999999999996 59999999999999999999987643
Q ss_pred CeeeeEEEecceeee----------------CC---cccccccccCCCCCcEEEEECCchhhc
Q 021254 223 TLIGQRVYRDSCVFA----------------DG---EYLKDLTILGRDLARIAIVDNTPQVFQ 266 (315)
Q Consensus 223 ~~f~~rl~Re~C~~~----------------~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~ 266 (315)
++..++..+..... ++ .+..-+..++.+++.+++|+|++.-..
T Consensus 66 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~ 127 (139)
T cd01427 66 -YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIE 127 (139)
T ss_pred -hhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHH
Confidence 45555543332211 11 133344455777899999999997543
No 27
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.38 E-value=6.8e-07 Score=78.38 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=78.4
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCch-------------
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQS------------- 208 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~------------- 208 (315)
+.+.||+||||+-... +. ...--+.+.||+.++|++|+ +.|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~~-------~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDHG-------YV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCCC-------CC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 5788999999994211 10 00112446799999999999 5799999999885
Q ss_pred --hhHHHHHHHhCCCCCeeeeEEEec-----------ceeeeCC---cccccccccCCCCCcEEEEECCchhhccCCCCe
Q 021254 209 --IYAGQLLDILDPNQTLIGQRVYRD-----------SCVFADG---EYLKDLTILGRDLARIAIVDNTPQVFQLQVDNG 272 (315)
Q Consensus 209 --~YA~~vL~~LDp~~~~f~~rl~Re-----------~C~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~Ng 272 (315)
.+...++..+... |...++.. .|...++ .|.+-++.+|.+++++++|+|++.-......+|
T Consensus 67 ~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG 143 (176)
T TIGR00213 67 LTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAK 143 (176)
T ss_pred HHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCC
Confidence 3334445444332 44444432 3333332 467788889999999999999998877777778
Q ss_pred eee
Q 021254 273 IPI 275 (315)
Q Consensus 273 I~I 275 (315)
+..
T Consensus 144 ~~~ 146 (176)
T TIGR00213 144 VKT 146 (176)
T ss_pred CcE
Confidence 754
No 28
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.34 E-value=1.9e-07 Score=83.70 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=77.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCC-CeeeeEEEecceeeeCC---cccccccccCCC-CCc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQ-TLIGQRVYRDSCVFADG---EYLKDLTILGRD-LAR 254 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~-~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrd-l~~ 254 (315)
+.+.||+.++|++|+ +.+.++|-|++...++..+++.++... .+|...+..++-...+. .|.+-+.++|.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 468899999999997 689999999999999999999998761 48988877666433332 366777888886 799
Q ss_pred EEEEECCchhhccCCCCeeee
Q 021254 255 IAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 255 vIIIDDsp~~~~~q~~NgI~I 275 (315)
+++|+|++.-.......|+.+
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999998777777778776
No 29
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.34 E-value=1.4e-06 Score=83.33 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=91.6
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeC-chHHHHHHHhhc-ccEEEEEcCCchhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQR-PYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lR-P~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~ 216 (315)
...++.+||||||||+.... -|..| ||+.++|++|.+ .+.++|||++.+.++..+++
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred cccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 36778999999999999743 14478 999999999995 69999999999999999999
Q ss_pred HhCCCCCeeeeEEEecceeeeC----------------Ccccccc-----------------cccCCCCCc-EEEEECCc
Q 021254 217 ILDPNQTLIGQRVYRDSCVFAD----------------GEYLKDL-----------------TILGRDLAR-IAIVDNTP 262 (315)
Q Consensus 217 ~LDp~~~~f~~rl~Re~C~~~~----------------g~y~KDL-----------------~~Lgrdl~~-vIIIDDsp 262 (315)
.++..+ +|..++..++....+ ..+..|. ...|...-+ +.+|||-+
T Consensus 182 ~lGLd~-YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~ 260 (301)
T TIGR01684 182 KVKLDR-YFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLA 260 (301)
T ss_pred HcCCCc-ccCEEEECCccccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHHHcCCceeeeEEEeccCc
Confidence 999986 887777755543322 1122333 223444433 56888887
Q ss_pred hhhccCCCCeeeeccccCCCCChHHH
Q 021254 263 QVFQLQVDNGIPIESWFGDPSDSALL 288 (315)
Q Consensus 263 ~~~~~q~~NgI~I~~f~~d~~D~eLl 288 (315)
..= +.-+|-+.++..-...+|...-
T Consensus 261 ~Nn-~~YD~fv~v~rcp~P~~DW~~~ 285 (301)
T TIGR01684 261 DNN-FNYDYFVNVSRCPVPVNDWDSY 285 (301)
T ss_pred ccC-ccceeEEEeeeCCCCchHHHHH
Confidence 642 4568888887776666665443
No 30
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.33 E-value=4.1e-07 Score=85.46 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=76.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc---ccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE---YLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~---y~KDL~~Lgrdl~~vI 256 (315)
+..+||+.++|+.++ +.+.++|.|++...++..+++.++-.+ +|...+..+.+...+.. |.+-+..+|.+++++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 457899999999998 579999999999999999999988765 78877776655443332 5666778899999999
Q ss_pred EEECCchhhccCCCCeeee
Q 021254 257 IVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I 275 (315)
+|+|++.-......+|+..
T Consensus 179 ~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred EECCCHHHHHHHHHCCCeE
Confidence 9999998876666777754
No 31
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.30 E-value=6.1e-07 Score=76.55 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=79.4
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCch-------------
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQS------------- 208 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~------------- 208 (315)
++|+||+||||+........ . ...-+...||+.++|+.|+ +.|.++|.|++..
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~-~------------~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~ 67 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYP-R------------SLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRA 67 (147)
T ss_pred CeEEEeCCCceeccCCcccC-C------------CHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHH
Confidence 47899999999997531100 0 0011357899999999998 6799999999873
Q ss_pred --hhHHHHHHHhCCCCCeeeeEEEe-----cceeeeCC---cccccccccCCCCCcEEEEECCchhhccCCCCeeee
Q 021254 209 --IYAGQLLDILDPNQTLIGQRVYR-----DSCVFADG---EYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 209 --~YA~~vL~~LDp~~~~f~~rl~R-----e~C~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I 275 (315)
.++..+++.++.. +...++. +.....++ .+.+-+..+|.+++++++|+|++.-.......||..
T Consensus 68 ~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 68 PNGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred HHHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 5667777777654 2222222 21111222 356777778999999999999988776666666654
No 32
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.29 E-value=5.8e-07 Score=80.54 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=71.6
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEeccee-----------ee-CC-ccccccc
Q 021254 181 VRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCV-----------FA-DG-EYLKDLT 246 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~-----------~~-~g-~y~KDL~ 246 (315)
+..+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|...+..++.. .. ++ .+.+-++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 5689999999999995 79999999999999999999988765 676544322111 00 11 2445556
Q ss_pred ccCCCCCcEEEEECCchhhccCCCCeeeecccc
Q 021254 247 ILGRDLARIAIVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 247 ~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
.+|.+++++++|+|++.-.......|+.+ .|.
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~~ 194 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGI-AFN 194 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeE-EeC
Confidence 67889999999999988776656667766 343
No 33
>PLN02940 riboflavin kinase
Probab=98.27 E-value=1.9e-07 Score=92.18 Aligned_cols=97 Identities=6% Similarity=0.035 Sum_probs=80.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHH-HhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLD-ILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARI 255 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~-~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~v 255 (315)
+...||+.++|++|. +.+.++|-|++.+.++..+++ ..+-.. +|+.++..+++...+. .|.+-++.+|.+++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~-~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKE-SFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHh-hCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 456899999999998 669999999999999999887 566654 8999999888766554 4778888899999999
Q ss_pred EEEECCchhhccCCCCeeeeccc
Q 021254 256 AIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 256 IIIDDsp~~~~~q~~NgI~I~~f 278 (315)
++|+|++.........|+.+-..
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v 193 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAV 193 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEE
Confidence 99999998776666777765433
No 34
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.26 E-value=2.2e-07 Score=83.54 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=77.0
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeee-eEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIG-QRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~-~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|+.|. +.++|.|++.+.+++.+++..+... +|. ..+..++....+. .|.+-+..+|..+++++
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 567799999999994 8999999999999999999988875 785 4555555544443 47788888999999999
Q ss_pred EEECCchhhccCCCCeeeeccc
Q 021254 257 IVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f 278 (315)
+|+|++.........|+++.-+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEEE
Confidence 9999999887777788777544
No 35
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.26 E-value=3.1e-06 Score=73.98 Aligned_cols=125 Identities=18% Similarity=0.090 Sum_probs=90.4
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC---------------
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG--------------- 206 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas--------------- 206 (315)
+.+.||.||||++.... .| . ....-.+..-||+.++|++|. +.|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~-----~~--~-----~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS-----DF--Q-----VDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCC-----cc--c-----cCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 57899999999984321 11 0 011113667899999999999 57999999996
Q ss_pred chhhHHHHHHHhCCCCCeeeeEEEe-----cceeeeCCc---ccccccccCCCCCcEEEEECCchhhccCCCCeeeeccc
Q 021254 207 QSIYAGQLLDILDPNQTLIGQRVYR-----DSCVFADGE---YLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 207 ~~~YA~~vL~~LDp~~~~f~~rl~R-----e~C~~~~g~---y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f 278 (315)
...++..+++.++.. |...++. +++...++. +..-++.+|.+++++++|.|+..-......+|+..-.+
T Consensus 70 ~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 70 PHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred HHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 356888888888875 7666653 565554443 45556677999999999999988777777888887665
Q ss_pred cCCC
Q 021254 279 FGDP 282 (315)
Q Consensus 279 ~~d~ 282 (315)
...+
T Consensus 147 ~~~~ 150 (161)
T TIGR01261 147 DEEE 150 (161)
T ss_pred Chhh
Confidence 5443
No 36
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.24 E-value=1.6e-07 Score=83.03 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=69.2
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCC---CeeeeEEEecceeeeCCcccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQ---TLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~---~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vII 257 (315)
+...||+.++|++|++.+.+++-|++.......+++.+...+ .+|+..+..+.+......+.+-++.+| ++.+|+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~ 150 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCF 150 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEE
Confidence 567999999999999777777777766655555666664432 156667666664332234666777788 688999
Q ss_pred EECCchhhccCCCC--eeeeccc
Q 021254 258 VDNTPQVFQLQVDN--GIPIESW 278 (315)
Q Consensus 258 IDDsp~~~~~q~~N--gI~I~~f 278 (315)
|||++........+ ||..-.+
T Consensus 151 vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 151 VDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred eCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999988777788 8877655
No 37
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.23 E-value=8.1e-07 Score=87.72 Aligned_cols=137 Identities=24% Similarity=0.418 Sum_probs=102.0
Q ss_pred CCCCeEEEEeCCcceeceecCCCC--CC--------CceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCch
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCK--DA--------DFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQS 208 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~--~~--------d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~ 208 (315)
..++..||.|+|.|..|+...+.. +. .......+......++++.||++..|+...++.|++.+||.+..
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 356778999999999999876511 00 00011112223456889999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCeeeeEEEecceeeeCCccccccccc-CCCCCcEEEEECCchhhcc--CCCCeeeecc
Q 021254 209 IYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTIL-GRDLARIAIVDNTPQVFQL--QVDNGIPIES 277 (315)
Q Consensus 209 ~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~L-grdl~~vIIIDDsp~~~~~--q~~NgI~I~~ 277 (315)
.||..+.+++||.|++|..+....+- ..+.-.|-++++ ..+.+.++++||.+..|.- --.|.+...+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~~~~~~~--~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~~~~v~~~~ 172 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDRILSRDE--SGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMNSNFVAKSP 172 (390)
T ss_pred cchhhhhhcccccccccccccccccc--cccchhhhhhhcCccccccccccccccccCCccchhhhhhcccc
Confidence 99999999999999999877653321 233456777777 7888899999999999921 2355555555
No 38
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.20 E-value=2.4e-06 Score=82.14 Aligned_cols=109 Identities=15% Similarity=0.065 Sum_probs=77.7
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHH--
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDI-- 217 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~-- 217 (315)
.++++|+|||+||+.-..-... ...-.+....|++.++|+.|+ +.+.++|.|+.....|..+++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g------------~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDG------------IDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCC------------ccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCc
Confidence 4789999999999976531110 000001124789999999999 6799999999999999999998
Q ss_pred --hCCCCCeeeeEEEecceeeeC-CcccccccccCCCCCcEEEEECCchhh
Q 021254 218 --LDPNQTLIGQRVYRDSCVFAD-GEYLKDLTILGRDLARIAIVDNTPQVF 265 (315)
Q Consensus 218 --LDp~~~~f~~rl~Re~C~~~~-g~y~KDL~~Lgrdl~~vIIIDDsp~~~ 265 (315)
+.... +|...... ...+ ..+.+-+..+|.+++.+|+|||++...
T Consensus 70 ~~~~~~~-~f~~~~~~---~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 70 DFILQAE-DFDARSIN---WGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred cccCcHH-HeeEEEEe---cCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 65543 56544221 1112 235566677899999999999999865
No 39
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.19 E-value=3.7e-06 Score=73.83 Aligned_cols=117 Identities=16% Similarity=0.043 Sum_probs=79.1
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc-ccEEEEEcCCch------------
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS-MFDVVIFTAGQS------------ 208 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~-~fEIvIfTas~~------------ 208 (315)
.+.++||+||||+..... .. .... .+...||+.++|++|++ .|.++|.|++..
T Consensus 3 ~~~~~~d~~~t~~~~~~~-~~-----------~~~~--~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG-YV-----------KSPD--EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred ccEEEEECCCCcccCCcc-cc-----------CCHH--HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 467999999998665311 00 0011 24578999999999995 699999998863
Q ss_pred ---hhHHHHHHHhCCCCCeeeeEEEecc-----eeeeCC---cccccccccCCCCCcEEEEECCchhhccCCCCeeee
Q 021254 209 ---IYAGQLLDILDPNQTLIGQRVYRDS-----CVFADG---EYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 209 ---~YA~~vL~~LDp~~~~f~~rl~Re~-----C~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I 275 (315)
.+...+++.++. +|...++... +...+. .|.+-+..+|.+++++++|+|++.-.......|+.+
T Consensus 69 ~~~~~~~~~l~~~g~---~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~ 143 (181)
T PRK08942 69 ALHEKMDWSLADRGG---RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTP 143 (181)
T ss_pred HHHHHHHHHHHHcCC---ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeE
Confidence 333444554432 3666665433 222332 367888889999999999999998776666666643
No 40
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.17 E-value=7.7e-07 Score=75.30 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=65.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
....||+.++|+.+. +.+.++|.|++.+..+..+++.+ .. .+|...+..+++. .++ .|.+-++.+|.++ +++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~-~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l 138 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LG-DYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVL 138 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HH-hcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEE
Confidence 445699999999997 67999999999999999999996 33 4788877777765 443 3677778889988 999
Q ss_pred EEECCchhh
Q 021254 257 IVDNTPQVF 265 (315)
Q Consensus 257 IIDDsp~~~ 265 (315)
+|.|++.-.
T Consensus 139 ~iGDs~~Di 147 (154)
T TIGR01549 139 HVGDNLNDI 147 (154)
T ss_pred EEeCCHHHH
Confidence 999997543
No 41
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.17 E-value=2e-06 Score=81.03 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=94.6
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
.++..+++|+||||........ .++. . ..-....|++.++|+.+. +.+.++|.|+.....+..+++.|
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~--~~~~------~---~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSP--YDWT------K---VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCc--cchh------h---cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 4457899999999998753211 1111 0 112346899999999998 56999999999999999999999
Q ss_pred CCCCCeeeeEEEecc-------eeeeCC---cccccccccCC-CCCcEEEEECCchhhccCCCCeeeeccc
Q 021254 219 DPNQTLIGQRVYRDS-------CVFADG---EYLKDLTILGR-DLARIAIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 219 Dp~~~~f~~rl~Re~-------C~~~~g---~y~KDL~~Lgr-dl~~vIIIDDsp~~~~~q~~NgI~I~~f 278 (315)
+..+.+|...+..+. +...+. .+.+.|..++. +++.+++|||++........+||++-..
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 988767877666652 112222 24456666777 6799999999999988888899887554
No 42
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.12 E-value=6.8e-06 Score=72.77 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=66.8
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecC----eeeeeeEeeCchHHHHHHHhh-cccEEEEEcC-CchhhHHHHH
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKM----EVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTA-GQSIYAGQLL 215 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~----~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTa-s~~~YA~~vL 215 (315)
++.+|||||.||+..-....-.+.|.- .-++ ...+.-|.+-|++.+.|+.|. ...+|++.|. ..+..|.++|
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~--~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L 80 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKK--ISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL 80 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE---TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCcee--cCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH
Confidence 468999999999987653332222211 0111 123445889999999999999 6899999995 5788999999
Q ss_pred HHhCCC----------CCeeeeEEEecceeeeCCccccccc-ccCCCCCcEEEEECCchhh
Q 021254 216 DILDPN----------QTLIGQRVYRDSCVFADGEYLKDLT-ILGRDLARIAIVDNTPQVF 265 (315)
Q Consensus 216 ~~LDp~----------~~~f~~rl~Re~C~~~~g~y~KDL~-~Lgrdl~~vIIIDDsp~~~ 265 (315)
+.|+.. . +|.+.=.-.. .+..+++.|. ..|.+.+.++++||.....
T Consensus 81 ~~l~i~~~~~~~~~~~~-~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 81 KLLEIDDADGDGVPLIE-YFDYLEIYPG---SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHTT-C----------C-CECEEEESSS----HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HhcCCCccccccccchh-hcchhheecC---chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 999877 3 5544221111 1223444444 5699999999999988754
No 43
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.09 E-value=2.9e-06 Score=78.87 Aligned_cols=133 Identities=11% Similarity=-0.009 Sum_probs=81.1
Q ss_pred CCCCeEEEEeCCcceeceecC-----CC-CCCCcee--eeeecC---eeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC
Q 021254 139 AGLPITLVLDLDETLVHSSFD-----NC-KDADFSF--PIHSKM---EVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG 206 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~-----~~-~~~d~~~--~i~~~~---~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas 206 (315)
.++++.++|||||||++|+.- +. ...++.+ .-.+.. ..........|++.+||+++. +.+.++|-|+.
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 355679999999999999851 10 1111111 000000 000112334455999999998 57999999998
Q ss_pred ----chhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeec
Q 021254 207 ----QSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 207 ----~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~ 276 (315)
...+++.+++.++... +|...+..+.....+. -|. ..+. ...-+|+|-|+..-+.....+|+...
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~-~f~~i~~~d~~~~~Kp--~~~-~~l~-~~~i~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPA-MNPVIFAGDKPGQYQY--TKT-QWIQ-DKNIRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CCCcCHHHHHHHHHHhCCch-heeEEECCCCCCCCCC--CHH-HHHH-hCCCeEEEeCCHHHHHHHHHCCCCEE
Confidence 6679999999998875 7766555554322111 122 1121 22337999999987766666666643
No 44
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.03 E-value=1.6e-05 Score=69.81 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=70.1
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchh-----------
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSI----------- 209 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~----------- 209 (315)
++.++||+||||+....... + . ..... +...-||+.+.|++|. +.|.++|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~----~--~----~~~~~-~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~ 81 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV----F--P----TSASD-WRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFK 81 (166)
T ss_pred CcEEEEeCCCceEecCCCCc----c--c----CChHH-eEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHH
Confidence 46789999999997642110 0 0 00001 1124599999999997 68999999997763
Q ss_pred -hHHHHHHHhCCCCCeeeeEEEecceeeeC---CcccccccccC--CCCCcEEEEECCc
Q 021254 210 -YAGQLLDILDPNQTLIGQRVYRDSCVFAD---GEYLKDLTILG--RDLARIAIVDNTP 262 (315)
Q Consensus 210 -YA~~vL~~LDp~~~~f~~rl~Re~C~~~~---g~y~KDL~~Lg--rdl~~vIIIDDsp 262 (315)
++..+++.++.. +...+..+.....+ +.+..-+..+| .+++++++|.|++
T Consensus 82 ~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 82 NKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 567788888764 22333333322222 23455566777 8999999999997
No 45
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.02 E-value=3e-06 Score=93.54 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=83.2
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEEEE
Q 021254 183 QRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIAIV 258 (315)
Q Consensus 183 lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vIII 258 (315)
..||+.++|++|+ +.+.++|.|++...+++.+++.++....+|+..+..+++...+. .|.+-++.+|.+++++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 4799999999998 67999999999999999999999875447999988888776554 4788888999999999999
Q ss_pred ECCchhhccCCCCeeeeccccC
Q 021254 259 DNTPQVFQLQVDNGIPIESWFG 280 (315)
Q Consensus 259 DDsp~~~~~q~~NgI~I~~f~~ 280 (315)
+|++..+......|+..-....
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVTT 263 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEECC
Confidence 9999988777778877665543
No 46
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.96 E-value=6.9e-06 Score=69.04 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=80.3
Q ss_pred eeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCc
Q 021254 179 VFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLAR 254 (315)
Q Consensus 179 ~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~ 254 (315)
......|++.++|+.++ +.+.++|.|++...++..+++.+.... +|+..++.+++...+. .|.+-++.+|.++++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~-~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDD-YFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGG-GCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccccccc-ccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 45788999999999999 899999999999999999999998774 8998888887666554 377778888999999
Q ss_pred EEEEECCchhhccCCCCeee
Q 021254 255 IAIVDNTPQVFQLQVDNGIP 274 (315)
Q Consensus 255 vIIIDDsp~~~~~q~~NgI~ 274 (315)
+++|||++.........|+.
T Consensus 153 ~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 153 ILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEEEESSHHHHHHHHHTTSE
T ss_pred EEEEeCCHHHHHHHHHcCCe
Confidence 99999999876555555554
No 47
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.94 E-value=9.7e-06 Score=73.60 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=78.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc---ccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE---YLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~---y~KDL~~Lgrdl~~vI 256 (315)
...-||+.+.|+.++ +.|.++|.|+.....++.+++.++... +|..++..+.+...++. ...-+..+|.+++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 467899999999999 679999999999999999999999986 89888875555555543 4566677888877999
Q ss_pred EEECCchhhccCCCCeeeec
Q 021254 257 IVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~ 276 (315)
+|=|+..-......+|++..
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v 186 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAV 186 (220)
T ss_pred EECCCHHHHHHHHHcCCCEE
Confidence 99999998877777775533
No 48
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.91 E-value=4.5e-06 Score=83.94 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=72.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceee-eCC-cccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVF-ADG-EYLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~-~~g-~y~KDL~~Lgrdl~~vII 257 (315)
+.+.||+.++|++|+ +.+.++|.|++...++..+++.++-.. +|...+..++... .+. .|.+-+..+ +++++|+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v~ 405 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTETFSIEQINSLNKSDLVKSILNKY--DIKEAAV 405 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcceeEecCCCCCCCCcHHHHHHHHhc--CcceEEE
Confidence 567899999999998 679999999999999999999998876 8988888776421 122 244445454 4688999
Q ss_pred EECCchhhccCCCCeeee
Q 021254 258 VDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 258 IDDsp~~~~~q~~NgI~I 275 (315)
|.|++.-+......|+..
T Consensus 406 VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 406 VGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EeCCHHHHHHHHHCCCeE
Confidence 999998777677777765
No 49
>PRK06769 hypothetical protein; Validated
Probab=97.90 E-value=1.5e-05 Score=69.97 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=75.1
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhh-----HHHHH
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIY-----AGQLL 215 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~Y-----A~~vL 215 (315)
-..|+||+||||.-... + ...--+..-||+.++|++|+ +.|.++|.|++.... .....
T Consensus 4 ~~~~~~d~d~~~~~~~~-------~---------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~ 67 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTT-------I---------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFV 67 (173)
T ss_pred CcEEEEeCCCcccCCCC-------C---------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHH
Confidence 35789999999952210 0 00012346899999999998 579999999976421 11233
Q ss_pred HHhCCCCCeeeeEEE-----ecceeeeCC---cccccccccCCCCCcEEEEECCchhhccCCCCeeeeccc
Q 021254 216 DILDPNQTLIGQRVY-----RDSCVFADG---EYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 216 ~~LDp~~~~f~~rl~-----Re~C~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f 278 (315)
..+...+ |...+. .+.+...+. .|.+-++.+|.+++++++|+|++.-.......|+.....
T Consensus 68 ~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 68 QELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 3333323 333332 222222332 477888889999999999999998776666666665433
No 50
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.87 E-value=1.8e-05 Score=73.10 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=83.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|++|. +.+.++|-|++...++..+++.++... +|+.++..+++...+. .|.+-+..+|.++++++
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 567899999999997 679999999999999999999999875 8999999888765554 37888899999999999
Q ss_pred EEECCchhhccCCCCeeeeccc
Q 021254 257 IVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f 278 (315)
+|+|++.-......+|+..-..
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEEEE
Confidence 9999998877777888876544
No 51
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.86 E-value=1.4e-05 Score=71.36 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=79.2
Q ss_pred eEeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcE
Q 021254 180 FVRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARI 255 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~v 255 (315)
++.+.||+.++|++|.+ .+.++|.|++...++...++.++... +|+.++..+.....+. .|.+-++.+|.+++++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 170 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEA 170 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhE
Confidence 35789999999999985 59999999999999999999998875 8998888877665544 4778888999999999
Q ss_pred EEEECCc-hhhccCCCCeeeec
Q 021254 256 AIVDNTP-QVFQLQVDNGIPIE 276 (315)
Q Consensus 256 IIIDDsp-~~~~~q~~NgI~I~ 276 (315)
|+|+|++ .-+......|+...
T Consensus 171 ~~igDs~~~di~~A~~aG~~~i 192 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKTV 192 (221)
T ss_pred EEECCChHHHHHHHHHCCCEEE
Confidence 9999998 45555556666543
No 52
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.82 E-value=2.4e-05 Score=69.60 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=80.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|++|. +.+.++|.|++...++..+++.++..+ +|+..+..+++...+. .|.+-+..+|.++++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 667899999999998 579999999999999999999998876 8998888777654333 36677788899999999
Q ss_pred EEECCchhhccCCCCeeeecc
Q 021254 257 IVDNTPQVFQLQVDNGIPIES 277 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~ 277 (315)
+|+|++.-+.....+|+....
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~ 173 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVA 173 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEE
Confidence 999999877777788887654
No 53
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.80 E-value=2.1e-05 Score=69.74 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=80.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+..+||+.++|+.++ +.+.++|.|++...++..+++.++-.+ +|...+..+.....++ .|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 578999999999998 579999999999999999999998875 7887777665444443 36788888999999999
Q ss_pred EEECCchhhccCCCCeeeeccc
Q 021254 257 IVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f 278 (315)
+|+|++.-+......|++.-..
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEE
Confidence 9999998876666777776544
No 54
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.78 E-value=0.00015 Score=71.29 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=89.8
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC-------------
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG------------- 206 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas------------- 206 (315)
+++.|+||-||||+...... +. ......+...||+.++|++|. +.|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~-----y~-------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l 68 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTD-----FQ-------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDF 68 (354)
T ss_pred CCcEEEEeCCCCccCCCCcc-----cc-------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHH
Confidence 46789999999999974211 00 111223678999999999998 46999999995
Q ss_pred --chhhHHHHHHHhCCCCCeeeeEEEe-----cceeeeCCc---ccccccccCCCCCcEEEEECCchhhccCCCCeeeec
Q 021254 207 --QSIYAGQLLDILDPNQTLIGQRVYR-----DSCVFADGE---YLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 207 --~~~YA~~vL~~LDp~~~~f~~rl~R-----e~C~~~~g~---y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~ 276 (315)
...++..+++.++. +|...++. +.|...+.. +..-+..++.+++++++|-|+..-......+|+..-
T Consensus 69 ~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 69 DPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred hhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 24456666666654 36555554 455444432 334445678899999999999877766667777755
Q ss_pred cccCCCCChHHHHHHHHHh
Q 021254 277 SWFGDPSDSALLSLLMFLE 295 (315)
Q Consensus 277 ~f~~d~~D~eLl~L~~~L~ 295 (315)
-...+.- ..-++..+|.
T Consensus 146 ~v~~~~~--~~~~i~~~l~ 162 (354)
T PRK05446 146 RYARETL--NWDAIAEQLT 162 (354)
T ss_pred EEECCCC--CHHHHHHHHh
Confidence 3322222 2225555553
No 55
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.76 E-value=2.6e-05 Score=68.39 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=78.2
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCc-hhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQ-SIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~-~~YA~~vL~ 216 (315)
..+-..+|+|+||||+.... ...-|++.++|++|. +.+.++|.|++. ...+..+++
T Consensus 22 ~~~v~~vv~D~Dgtl~~~~~----------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~ 79 (170)
T TIGR01668 22 KVGIKGVVLDKDNTLVYPDH----------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEK 79 (170)
T ss_pred HCCCCEEEEecCCccccCCC----------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHH
Confidence 35667899999999997521 124799999999998 459999999998 678888887
Q ss_pred HhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCch-hhccCCCCeeeeccc
Q 021254 217 ILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQ-VFQLQVDNGIPIESW 278 (315)
Q Consensus 217 ~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~-~~~~q~~NgI~I~~f 278 (315)
.++... + . ....-....|.+-++.+|.+++++++|+|+.. -......+|+..--+
T Consensus 80 ~~gl~~-~-----~-~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 80 ALGIPV-L-----P-HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred HcCCEE-E-----c-CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 775431 1 1 11111122466777788999999999999984 555555666654433
No 56
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.76 E-value=2.5e-05 Score=68.96 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|+++++ .|.++|.|++...++..+++.++... +|+.++..++....+. .|.+-++.+|.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 5567999999999996 59999999999999999999998664 8998888877655443 36777888999999999
Q ss_pred EEECCchhhccCCCCeeee
Q 021254 257 IVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I 275 (315)
+|+|++.-.......|+..
T Consensus 170 ~vgD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKT 188 (198)
T ss_pred EEeCCHHHHHHHHHCCCcE
Confidence 9999997666666677654
No 57
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.70 E-value=3.4e-05 Score=68.72 Aligned_cols=94 Identities=10% Similarity=0.057 Sum_probs=78.7
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---ccccccccc-CCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTIL-GRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~L-grdl~~vI 256 (315)
+..+||+.++|+++++.+.++|-|++...++..+++.++-.+ +|+.++..+.+...+. .|.+-++.+ |.+++++|
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 578999999999999669999999999999999999998876 8998888877665554 377888899 99999999
Q ss_pred EEECCc-hhhccCCCCeeee
Q 021254 257 IVDNTP-QVFQLQVDNGIPI 275 (315)
Q Consensus 257 IIDDsp-~~~~~q~~NgI~I 275 (315)
+|+|++ ........+|++.
T Consensus 175 ~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred EECCCcHHHHHHHHHCCCcE
Confidence 999997 4565555666654
No 58
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.68 E-value=3.8e-05 Score=68.26 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=80.8
Q ss_pred eEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc---ccccccccCCCCCcE
Q 021254 180 FVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE---YLKDLTILGRDLARI 255 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~---y~KDL~~Lgrdl~~v 255 (315)
+...+||+.++|++++ +.+.++|.|++....+..++.....-..+|+..++.+++...++. |..-++.+|.+++++
T Consensus 82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 3567899999999998 579999999999887766654421113478888888887766653 778888999999999
Q ss_pred EEEECCchhhccCCCCeeeeccccCC
Q 021254 256 AIVDNTPQVFQLQVDNGIPIESWFGD 281 (315)
Q Consensus 256 IIIDDsp~~~~~q~~NgI~I~~f~~d 281 (315)
++|||++.........|+....+.+.
T Consensus 162 l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 162 VFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred EEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 99999999887777888887665543
No 59
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.65 E-value=6.1e-05 Score=65.15 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=61.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC-----------------ccc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG-----------------EYL 242 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g-----------------~y~ 242 (315)
+.++||+.++|+.+. +.+.++|.|++...+++.+++.++... +|..++..+......| ...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 678999999999998 469999999999999999999987654 6777665332111101 112
Q ss_pred c--cccccCCC-CCcEEEEECCchhhccC
Q 021254 243 K--DLTILGRD-LARIAIVDNTPQVFQLQ 268 (315)
Q Consensus 243 K--DL~~Lgrd-l~~vIIIDDsp~~~~~q 268 (315)
| -+..+... ++++|+|+|+..-+...
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~aa 178 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCPA 178 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhchH
Confidence 3 22233333 78899999998765433
No 60
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.65 E-value=5.5e-05 Score=68.16 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=84.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|++++ +.+.++|.|++....++.+++.++..+ +|+..+..+.....++ .|..-++.+|.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 467799999999998 679999999999999999999998776 8988888776554443 36777888899999999
Q ss_pred EEECCchhhccCCCCeeeeccccCCC
Q 021254 257 IVDNTPQVFQLQVDNGIPIESWFGDP 282 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f~~d~ 282 (315)
+|+|++.-.......|++.--+....
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~ 195 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPE 195 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCc
Confidence 99999998877788888876665443
No 61
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.63 E-value=0.00032 Score=66.71 Aligned_cols=125 Identities=19% Similarity=0.173 Sum_probs=85.7
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEee-CchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQ-RPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~l-RP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~ 216 (315)
..++-.+|||||.|||..... +.. -|.+-+-|.++++ +.-+++||.|.+++|..-++
T Consensus 119 ~~~phVIVfDlD~TLItd~~~---------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~ 177 (297)
T PF05152_consen 119 WEPPHVIVFDLDSTLITDEGD---------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLK 177 (297)
T ss_pred CCCCcEEEEECCCcccccCCc---------------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHH
Confidence 356669999999999987532 112 3889999999995 56899999999999999999
Q ss_pred HhCCCCCeeeeEEEecceeee----------------CCccccccc-----------------ccCCCCCc-EEEEECCc
Q 021254 217 ILDPNQTLIGQRVYRDSCVFA----------------DGEYLKDLT-----------------ILGRDLAR-IAIVDNTP 262 (315)
Q Consensus 217 ~LDp~~~~f~~rl~Re~C~~~----------------~g~y~KDL~-----------------~Lgrdl~~-vIIIDDsp 262 (315)
.++..+ +|...+.+..-.-. ...+..|.. ..|...-+ +-+|||-+
T Consensus 178 ~~~L~~-~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~ 256 (297)
T PF05152_consen 178 ELKLEG-YFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVTNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 256 (297)
T ss_pred HhCCcc-ccEEEEeCCccCCcCCccceeecccceEEeccceEEeCCcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCc
Confidence 999885 89988875442111 111222222 22444333 45777766
Q ss_pred hhhccCCCCeeeeccccCCCCChH
Q 021254 263 QVFQLQVDNGIPIESWFGDPSDSA 286 (315)
Q Consensus 263 ~~~~~q~~NgI~I~~f~~d~~D~e 286 (315)
.. .+.-+|-+.++..-...+|..
T Consensus 257 ~N-n~~YD~FVnvkrcp~P~~DW~ 279 (297)
T PF05152_consen 257 SN-NYSYDYFVNVKRCPVPVNDWQ 279 (297)
T ss_pred cc-CccceeEEEeccCCCCchHHH
Confidence 44 356777777777665555553
No 62
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.62 E-value=6.3e-05 Score=64.86 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+.++||+||||+........ +++.. -++.++|+. -|++|+ +.+.++|-|+.....+..+++.+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~----------~~~~~-~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTN----------NGEEI-KAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred eEEEEeCceeEEcCeEEECC----------CCcEE-EEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 46889999999964221000 11111 224567776 788888 57999999999999999999999876
Q ss_pred CCeeeeEEEecceeeeCC-cccccccccCCCCCcEEEEECCchhhccCCCCeee
Q 021254 222 QTLIGQRVYRDSCVFADG-EYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIP 274 (315)
Q Consensus 222 ~~~f~~rl~Re~C~~~~g-~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~ 274 (315)
. +|... ..+. .+.+-+..+|.+++++++|-|+..-...-...|+.
T Consensus 69 ~-~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 69 H-LYQGQ-------SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred E-EEecc-------cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 4 55421 1122 24455567788999999999999876555555555
No 63
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.62 E-value=2.2e-05 Score=69.52 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEec-ceee-----eCC-cccccccccCCCCC
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRD-SCVF-----ADG-EYLKDLTILGRDLA 253 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re-~C~~-----~~g-~y~KDL~~Lgrdl~ 253 (315)
+..+||+.++|+.+++.+.++|.|++...+++.+++.++... +|...+.-. +... ..+ ....-+..++...+
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 567899999999999669999999999999999999998764 665544321 1100 011 11111223344557
Q ss_pred cEEEEECCchhhccCCCCeeee
Q 021254 254 RIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 254 ~vIIIDDsp~~~~~q~~NgI~I 275 (315)
+++.|.|+..-......+|+.+
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCE
Confidence 8999999998654444444444
No 64
>PRK09449 dUMP phosphatase; Provisional
Probab=97.60 E-value=6.4e-05 Score=67.53 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCC-CCCcEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGR-DLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgr-dl~~vI 256 (315)
+...||+.++|++|++.+.++|.|++...++...++.++..+ +|+..+..+++...++ .|.+-++.+|. +.++++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 467899999999999889999999999999999999988875 8999998888766554 37788888986 457899
Q ss_pred EEECCch-hhccCCCCeee
Q 021254 257 IVDNTPQ-VFQLQVDNGIP 274 (315)
Q Consensus 257 IIDDsp~-~~~~q~~NgI~ 274 (315)
+|+|++. -.......|+.
T Consensus 173 ~vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 173 MVGDNLHSDILGGINAGID 191 (224)
T ss_pred EEcCCcHHHHHHHHHCCCc
Confidence 9999984 55555555654
No 65
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.59 E-value=4e-05 Score=66.36 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=75.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
+...||+.++|+.|. ..+.++|-|++ .++..+++.++..+ +|+.++..+.+...+. .|.+-++.+|.+++++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 568999999999998 46999999988 78999999988765 7988888776654443 36677788899999999
Q ss_pred EEECCchhhccCCCCeeee
Q 021254 257 IVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I 275 (315)
+|+|++........+|++.
T Consensus 164 ~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFA 182 (185)
T ss_pred EEeCcHhhHHHHHHCCCeE
Confidence 9999998777666777754
No 66
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.58 E-value=5.3e-05 Score=69.60 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=70.9
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEeccee---------eeCCcccccccccCCC
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCV---------FADGEYLKDLTILGRD 251 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~---------~~~g~y~KDL~~Lgrd 251 (315)
++--|-|+++|-.|.+.+ .++||.+.+..|..+|+.|+... +|..+++.+--. -....|.|-....|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 566678999999999777 89999999999999999999986 899888854422 2233467777778888
Q ss_pred -CCcEEEEECCchhhccCCC
Q 021254 252 -LARIAIVDNTPQVFQLQVD 270 (315)
Q Consensus 252 -l~~vIIIDDsp~~~~~q~~ 270 (315)
++||+++|||....+....
T Consensus 177 ~p~~t~FfDDS~~NI~~ak~ 196 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNIQTAKE 196 (244)
T ss_pred CcCceEEEcCchhhHHHHHh
Confidence 9999999999987754433
No 67
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.53 E-value=0.00028 Score=65.74 Aligned_cols=131 Identities=11% Similarity=0.040 Sum_probs=77.3
Q ss_pred CCCCeEEEEeCCcceeceecCCC-CCCCc-----ee--eeee-c--CeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC
Q 021254 139 AGLPITLVLDLDETLVHSSFDNC-KDADF-----SF--PIHS-K--MEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG 206 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~-~~~d~-----~~--~i~~-~--~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas 206 (315)
.++++.++||+|||+++++.-.- ....| .+ .-.+ . ......+....||+.+||+++. +.++|++-|+.
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45677999999999999753110 01000 01 0000 0 0112334556677999999995 78999999994
Q ss_pred ----chhhHHHHHHHhCC-CCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeee
Q 021254 207 ----QSIYAGQLLDILDP-NQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 207 ----~~~YA~~vL~~LDp-~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I 275 (315)
...+++.+++.++. ...+|...+..+.. .+..-..-+. ...-+|+|-|+..-+......|+..
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~~l~----~~~i~I~IGDs~~Di~aA~~AGi~~ 207 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQWLK----KKNIRIFYGDSDNDITAAREAGARG 207 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHHHHH----hcCCeEEEcCCHHHHHHHHHcCCcE
Confidence 46688999987766 12367655554431 1111111111 2233899999988775555666654
No 68
>PLN02954 phosphoserine phosphatase
Probab=97.52 E-value=4.8e-05 Score=68.31 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=62.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCC-CeeeeEEEecc-------------eee-eCCc-ccc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQ-TLIGQRVYRDS-------------CVF-ADGE-YLK 243 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~-~~f~~rl~Re~-------------C~~-~~g~-y~K 243 (315)
..++||+.++|+++. +.+.++|-|++.+.+++.+++.++... .+|...+.-+. |.. .+.. +.+
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 457899999999998 579999999999999999999987652 36654433211 100 0111 111
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCCeeee
Q 021254 244 DLTILGRDLARIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 244 DL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I 275 (315)
-+..+| .+++|+|-|++.-......+|+.+
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~~ 192 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGADL 192 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCCE
Confidence 122234 368999999999776655544543
No 69
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.50 E-value=0.00011 Score=67.48 Aligned_cols=97 Identities=12% Similarity=-0.040 Sum_probs=80.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCee-eeEEEecceeeeCC---cccccccccCCC-CCc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLI-GQRVYRDSCVFADG---EYLKDLTILGRD-LAR 254 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f-~~rl~Re~C~~~~g---~y~KDL~~Lgrd-l~~ 254 (315)
+...||+.++|++|+ +.+.++|-|++...+++.+++.++..+ +| +.++..+.....++ .|.+-+..+|.. +++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 467899999999998 579999999999999999999998776 54 77777776555444 377888889984 899
Q ss_pred EEEEECCchhhccCCCCeeeeccc
Q 021254 255 IAIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 255 vIIIDDsp~~~~~q~~NgI~I~~f 278 (315)
+|+|.|++.-......+|+.....
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeEEEE
Confidence 999999999887777888877655
No 70
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.40 E-value=0.0008 Score=69.37 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=115.7
Q ss_pred CCCcccchhhc--------ccccccccccCCCCCCCccCCCCccccccccccccCCCCcccceeeccccc----ccCCCC
Q 021254 29 EDPVCSHEEIN--------FGTIFDLDLRRPCHEGKNVGQGTCEDILPIDKTLCNPHHELFSYSIQQTSL----LDQGSN 96 (315)
Q Consensus 29 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~q~~~----~~~~~~ 96 (315)
.|.+|+...-. .-+..++-.|-.-.+|.-+.+|......+=|.+-+-++-.-...-+..-++ .+.+..
T Consensus 45 ~d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~g~~l~~v~~~~~~~~~f~~~~~~~~~~~~~~~ 124 (526)
T TIGR01663 45 RDRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGHGDLLEIVNGLHPLTLQFEETFNPEPEPDKEKA 124 (526)
T ss_pred chhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecCCCEEEEeccccceeEEeeeccCCCcccccccc
Confidence 47889865433 233445555544567888888888888888877654333322222211111 111100
Q ss_pred cc--c-CC--cccccccCCchhhhccCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeCCcceeceecCCCCCCCceeeee
Q 021254 97 MQ--S-CL--GIADEEYYNPYLYFMGWQNLPQIAPSYWPRTPLREPIAGLPITLVLDLDETLVHSSFDNCKDADFSFPIH 171 (315)
Q Consensus 97 ~~--~-~~--~~~~~~~fdp~~fi~~~~~lp~~~~~~~~~llP~~~~~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~ 171 (315)
.+ + .+ .....+..+... -.+|+.+..+.. .-........+.+.||+||||+...... .| .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~------~~~~~~~~~~Kia~fD~DGTLi~t~sg~----~~--~-- 189 (526)
T TIGR01663 125 EPLSSQDEKRDAEKPEKRDRKG-NPGWENLEKLLI------FTAAGVKGQEKIAGFDLDGTIIKTKSGK----VF--P-- 189 (526)
T ss_pred cccccccccccchhhhhhcccC-CccccccCceEE------EecCCcCccCcEEEEECCCCccccCCCc----cC--C--
Confidence 00 0 00 000001000000 013444433210 0111112456789999999999753210 00 0
Q ss_pred ecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCch------------hhHHHHHHHhCCCCCeeeeEEEecceeeeC
Q 021254 172 SKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQS------------IYAGQLLDILDPNQTLIGQRVYRDSCVFAD 238 (315)
Q Consensus 172 ~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~------------~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~ 238 (315)
..... +..+-||+.+.|++|. ..|.|+|+|+... ..+..+++.++. .|...+..+.|.+.+
T Consensus 190 --~~~~d-~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfdviia~~~~~~RK 263 (526)
T TIGR01663 190 --KGPDD-WQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV---PFQVFIAIGAGFYRK 263 (526)
T ss_pred --CCHHH-eeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC---ceEEEEeCCCCCCCC
Confidence 00111 1224699999999999 5799999999776 468888888865 377555566665554
Q ss_pred C---ccccccccc----CCCCCcEEEEECCch
Q 021254 239 G---EYLKDLTIL----GRDLARIAIVDNTPQ 263 (315)
Q Consensus 239 g---~y~KDL~~L----grdl~~vIIIDDsp~ 263 (315)
. .+..-+..+ +.+++++++|-|+..
T Consensus 264 P~pGm~~~a~~~~~~~~~Id~~~S~~VGDaag 295 (526)
T TIGR01663 264 PLTGMWDHLKEEANDGTEIQEDDCFFVGDAAG 295 (526)
T ss_pred CCHHHHHHHHHhcCcccCCCHHHeEEeCCccc
Confidence 3 333333333 579999999999973
No 71
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.34 E-value=0.0001 Score=65.62 Aligned_cols=98 Identities=16% Similarity=0.052 Sum_probs=73.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhh--HHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIY--AGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLAR 254 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~Y--A~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~ 254 (315)
+...||+.++|++|+ +.+.++|.|++.... +...+..++.. .+|+.++..+++...+. .|.+-++.+|.++++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 567899999999998 579999999987655 33333333333 37888887666554443 377888899999999
Q ss_pred EEEEECCchhhccCCCCeeeecccc
Q 021254 255 IAIVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 255 vIIIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
+++|||++.........|+..-.+.
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~i~v~ 196 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITTIKVS 196 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 9999999998877778888765544
No 72
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.34 E-value=0.00024 Score=63.49 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=74.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vI 256 (315)
...+||+.++|+.++ +.+.++|.|++...++..+++.++..+ +|...+..+.+...+. .+.+-+..++.++++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-CccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 568999999999999 579999999999999999999998765 6876666555433332 25677778899999999
Q ss_pred EEECCchhhccCCCCeeee
Q 021254 257 IVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I 275 (315)
+|+|++.-.......|++.
T Consensus 171 ~igD~~~Di~~a~~~g~~~ 189 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCPS 189 (226)
T ss_pred EECCCHHHHHHHHHCCCcE
Confidence 9999988776555666643
No 73
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.30 E-value=0.00022 Score=69.20 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=67.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecc----------eee--eCCcc-ccccc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDS----------CVF--ADGEY-LKDLT 246 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~----------C~~--~~g~y-~KDL~ 246 (315)
+.++||+.++|+.+. ..+.++|.|++...+++.+++.++... .+...+-... +.. .+... .+-++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 668999999999999 569999999999999999999987754 3433322111 111 11122 23335
Q ss_pred ccCCCCCcEEEEECCchhhccCCCCeeeec
Q 021254 247 ILGRDLARIAIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 247 ~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~ 276 (315)
.+|.++++||.|-|+..-..+-...|+.|-
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 679999999999999987765555566554
No 74
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.27 E-value=0.0004 Score=64.63 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=78.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCC-CCcE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRD-LARI 255 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrd-l~~v 255 (315)
+..-||+.++|+.|+ +.+.++|-|++.+..+..+++.+...+-.+..++..+++...+. .|.+-++.+|.. ++.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 467899999999998 67999999999999999999988766522477777777655443 377888889975 6899
Q ss_pred EEEECCchhhccCCCCeeeeccc
Q 021254 256 AIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 256 IIIDDsp~~~~~q~~NgI~I~~f 278 (315)
|+|+|++.-+......|+..-..
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v 202 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGV 202 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEE
Confidence 99999998887777778766544
No 75
>PRK08238 hypothetical protein; Validated
Probab=97.27 E-value=0.001 Score=67.86 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=60.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc--ccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE--YLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~--y~KDL~~Lgrdl~~vII 257 (315)
...+|++.++|++++ +.+.++|-|++.+.++++++++++. |+..+..+.....+|. ...-.+.+| .+.++.
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd~~~~~kg~~K~~~l~~~l~--~~~~~y 144 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASDGTTNLKGAAKAAALVEAFG--ERGFDY 144 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCCCccccCCchHHHHHHHHhC--ccCeeE
Confidence 347899999999998 7899999999999999999999954 6666665543322221 111112233 245788
Q ss_pred EECCchhh--ccCCCCeeeec
Q 021254 258 VDNTPQVF--QLQVDNGIPIE 276 (315)
Q Consensus 258 IDDsp~~~--~~q~~NgI~I~ 276 (315)
+.|+..-. ...-++.+.|.
T Consensus 145 vGDS~~Dlp~~~~A~~av~Vn 165 (479)
T PRK08238 145 AGNSAADLPVWAAARRAIVVG 165 (479)
T ss_pred ecCCHHHHHHHHhCCCeEEEC
Confidence 88888633 22345666553
No 76
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.23 E-value=0.00034 Score=61.81 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=71.0
Q ss_pred eeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCc---ccccccccCCCCCcEEE
Q 021254 182 RQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGE---YLKDLTILGRDLARIAI 257 (315)
Q Consensus 182 ~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~---y~KDL~~Lgrdl~~vII 257 (315)
...||+.++|++|++ .+.++|.|++... +..+++.++..+ +|..++..+++...+.. |.+-++.+|.+++++|+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLE-YFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHH-hcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 567999999999984 6999999998775 477888887765 79888887776655543 67788889999999999
Q ss_pred EECCc-hhhccCCCCeee
Q 021254 258 VDNTP-QVFQLQVDNGIP 274 (315)
Q Consensus 258 IDDsp-~~~~~q~~NgI~ 274 (315)
|+|++ .-.......|+.
T Consensus 183 IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGWR 200 (203)
T ss_pred ECCCchHHHHHHHHcCCe
Confidence 99997 445444444443
No 77
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.22 E-value=0.00025 Score=61.32 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=71.7
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEEE
Q 021254 182 RQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIAI 257 (315)
Q Consensus 182 ~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vII 257 (315)
...||+.++|++|+ +.+.++|-|++. .+..+++.++... +|+..+..++-...+. .|.+-++.+|.+++++|+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56799999999998 669999999764 4677899988775 7888877655333333 367888888999999999
Q ss_pred EECCchhhccCCCCeeee
Q 021254 258 VDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 258 IDDsp~~~~~q~~NgI~I 275 (315)
|+|++.-+.....+|+..
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred EecCHHHHHHHHHcCCEE
Confidence 999998777667777764
No 78
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.20 E-value=0.00057 Score=61.01 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=79.0
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vII 257 (315)
+..-|++.++|+.+.+.|.++|.|++...++...+..++.. .+|+.+++.+.....+. .|..-++.+|.+++++++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLL-DYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCCh-hhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 56789999999999977999999999999999999999855 48999999999887664 378888899999999999
Q ss_pred EECCchhh-ccCCCCeee
Q 021254 258 VDNTPQVF-QLQVDNGIP 274 (315)
Q Consensus 258 IDDsp~~~-~~q~~NgI~ 274 (315)
|||+...- .....-|+.
T Consensus 177 VgD~~~~di~gA~~~G~~ 194 (229)
T COG1011 177 VGDSLENDILGARALGMK 194 (229)
T ss_pred ECCChhhhhHHHHhcCcE
Confidence 99999866 444444444
No 79
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.19 E-value=0.00045 Score=65.49 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=74.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCC--CeeeeEEEecceeeeCC---cccccccccCCCCCc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQ--TLIGQRVYRDSCVFADG---EYLKDLTILGRDLAR 254 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~--~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~ 254 (315)
+...||+.++|++++ +.+.++|.|++...++..+++.+.-.+ .+|... ..+.+...+. .|.+-+..+|.++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 468899999999998 579999999999999999999773222 123322 4555443333 367778889999999
Q ss_pred EEEEECCchhhccCCCCeeeecccc
Q 021254 255 IAIVDNTPQVFQLQVDNGIPIESWF 279 (315)
Q Consensus 255 vIIIDDsp~~~~~q~~NgI~I~~f~ 279 (315)
+|+|+|++.-+.....+|+.+....
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~ 246 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTK 246 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEc
Confidence 9999999998877777887776553
No 80
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.18 E-value=0.00096 Score=56.45 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=52.6
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHH---------
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAG--------- 212 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~--------- 212 (315)
+.+++||||||+..... .+. .....+.+.+.|+++. +.++|+++|+-......
T Consensus 2 K~i~~DiDGTL~~~~~~-----~y~------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-----DYA------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCCC-----ccc------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 47899999999764210 000 1236788999999985 78999999999888776
Q ss_pred ---HHHHHhCCCCCeeeeEEEec
Q 021254 213 ---QLLDILDPNQTLIGQRVYRD 232 (315)
Q Consensus 213 ---~vL~~LDp~~~~f~~rl~Re 232 (315)
.+++.|+..+-.+...+.|.
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCC
Confidence 77778877765555555544
No 81
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.17 E-value=0.00077 Score=58.94 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=68.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC-------------ccccccc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG-------------EYLKDLT 246 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g-------------~y~KDL~ 246 (315)
+..+||+.++|+.+. +.+.++|.|++...+++.+++.++... +|...+..++.....+ .+.+-+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 668999999999998 579999999999999999999998764 6766554332221111 1112234
Q ss_pred ccCCCCCcEEEEECCchhhccCCCCeeee
Q 021254 247 ILGRDLARIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 247 ~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I 275 (315)
.+|.+++++++|.|+..-...-...|+++
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 56888999999999987665544555544
No 82
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.17 E-value=0.00066 Score=60.16 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=74.0
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+..+.+|+|+||||+........ .+.....+.. |.+ .=++.+. +.++++|-|+.....+..+++.+
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~~----------~~~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMGN----------NGEELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEcC----------CCCEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 35778999999999986321000 0111111221 221 1334444 68999999999999999999999
Q ss_pred CCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeec
Q 021254 219 DPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 219 Dp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~ 276 (315)
.... +|. .+......+.+-+..+|.+++.+++|-|++.-...-...|+.+.
T Consensus 86 gl~~-~f~------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 86 GITH-LYQ------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred CCce-eec------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 7654 443 11111123455567789999999999999886655555566543
No 83
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.10 E-value=0.0011 Score=58.79 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=66.6
Q ss_pred CchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEEEEE
Q 021254 184 RPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIAIVD 259 (315)
Q Consensus 184 RP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vIIID 259 (315)
.|+..++|+.|+ +.+.++|.|++...++..+++.++... +|...+..++... +. .+.+-+..+|.+++++|+|+
T Consensus 108 ~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 108 LLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEe
Confidence 445699999998 569999999999999999999998875 8988888776544 43 36777788899999999999
Q ss_pred CCchhh
Q 021254 260 NTPQVF 265 (315)
Q Consensus 260 Dsp~~~ 265 (315)
|++.-.
T Consensus 186 D~~~Di 191 (197)
T TIGR01548 186 DTVDDI 191 (197)
T ss_pred CCHHHH
Confidence 998643
No 84
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.06 E-value=0.0012 Score=60.78 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=67.0
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHH--HHHHHh
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAG--QLLDIL 218 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~--~vL~~L 218 (315)
...++||+||||++... .-||+.++|++|. +.+.++|.|++.+..+. ..++.+
T Consensus 8 ~~~~~~D~dG~l~~~~~------------------------~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~ 63 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGNH------------------------TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL 63 (242)
T ss_pred CCEEEEecccccccCCc------------------------cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC
Confidence 45789999999998632 4799999999999 67999999999988777 788888
Q ss_pred CCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCc
Q 021254 219 DPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262 (315)
Q Consensus 219 Dp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp 262 (315)
+....+|..++....... ..+..-++.+|..++++++|-|+.
T Consensus 64 gl~~~~~~~Ii~s~~~~~--~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 64 GINADLPEMIISSGEIAV--QMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred CCCccccceEEccHHHHH--HHHHhhhhhccCCCceEEEeCCcc
Confidence 775325776666553221 111122234455667777777755
No 85
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.04 E-value=0.00056 Score=62.86 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=71.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhC---CCCCeeeeEEEecceeee-CCcccccccccCCCCCcE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILD---PNQTLIGQRVYRDSCVFA-DGEYLKDLTILGRDLARI 255 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LD---p~~~~f~~rl~Re~C~~~-~g~y~KDL~~Lgrdl~~v 255 (315)
..+.|++.++|+++. +.+.++|+|+++......+++..+ ... +|+..+....+... ...|.+-++.+|.+++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~-~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~ 172 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTP-YFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREI 172 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhh-hcceEEEeCcccCCCHHHHHHHHHHhCcChhHE
Confidence 457899999999998 689999999999999998888863 322 56554432222111 124788889999999999
Q ss_pred EEEECCchhhccCCCCeeeec
Q 021254 256 AIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 256 IIIDDsp~~~~~q~~NgI~I~ 276 (315)
++|+|++.........|+...
T Consensus 173 lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 173 LFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred EEEeCCHHHHHHHHHcCCEEE
Confidence 999999987766667777653
No 86
>PLN02811 hydrolase
Probab=96.99 E-value=0.00081 Score=60.72 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=73.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHH-HHHHhCCCCCeeeeEEEec--ceeeeCC---cccccccccC---C
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQ-LLDILDPNQTLIGQRVYRD--SCVFADG---EYLKDLTILG---R 250 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~-vL~~LDp~~~~f~~rl~Re--~C~~~~g---~y~KDL~~Lg---r 250 (315)
+.+.||+.++|+.|+ ..+.++|-|++.+.++.. +.+..... .+|..+++.+ ++...+. .|.+-+..+| .
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 446899999999998 579999999998876554 33333333 3788888888 6654443 4677777775 8
Q ss_pred CCCcEEEEECCchhhccCCCCeeeeccc
Q 021254 251 DLARIAIVDNTPQVFQLQVDNGIPIESW 278 (315)
Q Consensus 251 dl~~vIIIDDsp~~~~~q~~NgI~I~~f 278 (315)
+++++|+|+|++.-.......|++.-..
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 8999999999999887777778777655
No 87
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.89 E-value=0.0039 Score=56.30 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=78.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC-CCeeeeE--EEecceeeeCC-------------cccc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN-QTLIGQR--VYRDSCVFADG-------------EYLK 243 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~-~~~f~~r--l~Re~C~~~~g-------------~y~K 243 (315)
+.++||+.+||+++. +.+.++|.|++...|++++++.+ .. ..++... +..+.....+. ...+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 678999999999998 57999999999999999999987 32 2233222 22221111110 1234
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCCeeeeccccCCCCChHHHHHHHHHhhc-------cCCCChHHHHHhhhcC
Q 021254 244 DLTILGRDLARIAIVDNTPQVFQLQVDNGIPIESWFGDPSDSALLSLLMFLETL-------VGADDVRPIIKQKYGS 313 (315)
Q Consensus 244 DL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~f~~d~~D~eLl~L~~~L~~L-------~~~~DVR~~l~~~f~~ 313 (315)
-+..++.+..++|+|.|+..-.......|+.+.. + . |..+.+.. ....||..+|++.|..
T Consensus 152 ~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~------~-~---l~~~~~~~~~~~~~~~~f~ei~~~l~~~~~~ 218 (219)
T PRK09552 152 LIRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR------D-F---LITKCEELGIPYTPFETFHDVQTELKHLLEV 218 (219)
T ss_pred HHHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH------H-H---HHHHHHHcCCCccccCCHHHHHHHHHHHhcc
Confidence 4556677888999999999877655566774441 1 2 33343321 2223777777776654
No 88
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=96.81 E-value=0.00057 Score=63.13 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=77.0
Q ss_pred eEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEE--ecceeeeCC---cccccccccCCCC-
Q 021254 180 FVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVY--RDSCVFADG---EYLKDLTILGRDL- 252 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~--Re~C~~~~g---~y~KDL~~Lgrdl- 252 (315)
.++.-||+..++..|. ..-.+.++|++.+.+++..++.+.---..|++... -..+...+. .|++-++++|.++
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 3677899999999999 67999999999999999988888633336777766 333332222 3899999999998
Q ss_pred CcEEEEECCchhhccCCCCeeeeccccC
Q 021254 253 ARIAIVDNTPQVFQLQVDNGIPIESWFG 280 (315)
Q Consensus 253 ~~vIIIDDsp~~~~~q~~NgI~I~~f~~ 280 (315)
+++++++|+|........-|.++...-+
T Consensus 170 ~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 170 SKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred cceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 9999999999987666666655555443
No 89
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.61 E-value=0.0017 Score=61.44 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=67.2
Q ss_pred CCCeEEEEeCCcceeceecC----CCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHH-
Q 021254 140 GLPITLVLDLDETLVHSSFD----NCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQ- 213 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~----~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~- 213 (315)
.+++.+|||+|||+++.+.- ......|. +-.|..-....-...-||+.+||+.+. +...++|.|+....+.+.
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~-~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFD-PETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCC-HHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 45789999999999987631 00111110 000110011122446799999999997 679999999988766664
Q ss_pred --HHHHhCCCCCeeeeEEEecceeeeCCcccccccc--cCCCCCcEEEEECCchhh
Q 021254 214 --LLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTI--LGRDLARIAIVDNTPQVF 265 (315)
Q Consensus 214 --vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~--Lgrdl~~vIIIDDsp~~~ 265 (315)
.|+.++.....+++.+.|+.- . -|..++ +...-.=++.|.|...-+
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~~-~-----~K~~rr~~I~~~y~Ivl~vGD~~~Df 201 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKDK-S-----SKESRRQKVQKDYEIVLLFGDNLLDF 201 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCCC-C-----CcHHHHHHHHhcCCEEEEECCCHHHh
Confidence 444444433234566777531 1 122221 111112277788876655
No 90
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=96.58 E-value=0.00061 Score=58.71 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=65.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vII 257 (315)
+..+||+.++|+. ++|.|++...++..+++.++... +|+.++..+.....++ .|.+-++.+|.+++++++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 5578999999993 78999999999999999998765 8988888777655554 378888999999999999
Q ss_pred EECCchh
Q 021254 258 VDNTPQV 264 (315)
Q Consensus 258 IDDsp~~ 264 (315)
|+|++..
T Consensus 162 vgD~~~D 168 (175)
T TIGR01493 162 VAAHQWD 168 (175)
T ss_pred EecChhh
Confidence 9999753
No 91
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0016 Score=59.54 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=68.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeC---Cc---------cc-cccc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFAD---GE---------YL-KDLT 246 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~---g~---------y~-KDL~ 246 (315)
+.++||+.+.+++++ ..+.++|.|+|-..+++++.+.++.+. .+..++-.++-.+.. |. -+ .=++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 788999999999999 569999999999999999999999886 567676655511111 11 11 1123
Q ss_pred ccCCCCCcEEEEECCchhhcc--CCCCeeee
Q 021254 247 ILGRDLARIAIVDNTPQVFQL--QVDNGIPI 275 (315)
Q Consensus 247 ~Lgrdl~~vIIIDDsp~~~~~--q~~NgI~I 275 (315)
.+|.++++++.+=|+..-..+ .-++++.+
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 458889999999998875433 33445444
No 92
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.48 E-value=0.0084 Score=55.37 Aligned_cols=59 Identities=24% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhC
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILD 219 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LD 219 (315)
..+.+++||||||+.+... ..|...+.|+++. +...++|-|......+.++++.|.
T Consensus 2 ~~kli~~DlDGTLl~~~~~-----------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~ 58 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-----------------------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELG 58 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 3578999999999998642 5889999999886 889999999999999999999998
Q ss_pred CCC
Q 021254 220 PNQ 222 (315)
Q Consensus 220 p~~ 222 (315)
..+
T Consensus 59 ~~~ 61 (264)
T COG0561 59 LDG 61 (264)
T ss_pred CCc
Confidence 876
No 93
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.42 E-value=0.011 Score=51.49 Aligned_cols=104 Identities=21% Similarity=0.166 Sum_probs=55.8
Q ss_pred eEEEEeCCcceeceecCCC---CCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCch----------
Q 021254 143 ITLVLDLDETLVHSSFDNC---KDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQS---------- 208 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~---~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~---------- 208 (315)
|.+.|||||||+....... ...| +..+-|++-+-|+++. +.|.|||+|+..-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D--------------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~ 66 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDD--------------WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDL 66 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCG--------------GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHH--------------hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchH
Confidence 4678999999999854211 1112 2335678999999999 5899999998621
Q ss_pred ----hhHHHHHHHhCCCCCeeeeEEE-ecceeeeC---Cccc---ccccc-cCCCCCcEEEEECCchh
Q 021254 209 ----IYAGQLLDILDPNQTLIGQRVY-RDSCVFAD---GEYL---KDLTI-LGRDLARIAIVDNTPQV 264 (315)
Q Consensus 209 ----~YA~~vL~~LDp~~~~f~~rl~-Re~C~~~~---g~y~---KDL~~-Lgrdl~~vIIIDDsp~~ 264 (315)
...+.+++.++-. + ..++ ..+..+.+ |++. +++.. +..|+++.++|=|+..-
T Consensus 67 ~~~~~ki~~il~~l~ip---~-~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 67 ENFHEKIENILKELGIP---I-QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHCTS----E-EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHHHHcCCc---e-EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCC
Confidence 2233455555322 2 2222 22212222 3333 33332 23688999999997543
No 94
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.24 E-value=0.0092 Score=48.13 Aligned_cols=50 Identities=24% Similarity=0.188 Sum_probs=37.9
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
++||+||||++... .=||+.+||++|. ....+++.|+++..-...+.+.|
T Consensus 1 ~l~D~dGvl~~g~~------------------------~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE------------------------PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETTE------------------------E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCCC------------------------cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 58999999998532 3699999999999 56999999999866555555554
No 95
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.22 E-value=0.012 Score=54.93 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=47.9
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
.+.+++||||||+.+.. ...|...+.|+++. +.+.++|-|......+..+++.++.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 46899999999998531 13577889999999 4699999999999999999999876
Q ss_pred CC
Q 021254 221 NQ 222 (315)
Q Consensus 221 ~~ 222 (315)
..
T Consensus 61 ~~ 62 (273)
T PRK00192 61 ED 62 (273)
T ss_pred CC
Confidence 53
No 96
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.19 E-value=0.015 Score=51.65 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=64.9
Q ss_pred CCCCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhccc---EEEEEcCCc------
Q 021254 137 PIAGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMF---DVVIFTAGQ------ 207 (315)
Q Consensus 137 ~~~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~f---EIvIfTas~------ 207 (315)
.+..+-+.||||+|+||+..... ..-|.+.+.+++|.+.| .|+|.|++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~----------------------~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYED----------------------EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcC----------------------cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 44678889999999999865321 14788889999999655 399999983
Q ss_pred -hhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccC-----CCCCcEEEEECCch
Q 021254 208 -SIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILG-----RDLARIAIVDNTPQ 263 (315)
Q Consensus 208 -~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lg-----rdl~~vIIIDDsp~ 263 (315)
..-|+.+-+.|+.. ++.|+--.. +.+-+-++.++ ..++++++|-|.-.
T Consensus 94 ~~~~a~~~~~~lgIp--vl~h~~kKP------~~~~~i~~~~~~~~~~~~p~eiavIGDrl~ 147 (168)
T PF09419_consen 94 DGERAEALEKALGIP--VLRHRAKKP------GCFREILKYFKCQKVVTSPSEIAVIGDRLF 147 (168)
T ss_pred cHHHHHHHHHhhCCc--EEEeCCCCC------ccHHHHHHHHhhccCCCCchhEEEEcchHH
Confidence 67788888888643 233321111 22222233332 35889999999754
No 97
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=96.12 E-value=0.011 Score=52.42 Aligned_cols=54 Identities=26% Similarity=0.208 Sum_probs=45.8
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+++||||||+++... .-|...+.|+++. +...++|.|......+..++..+.-.
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-----------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999996432 3578889999888 78999999999999999999987644
No 98
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.06 E-value=0.007 Score=53.63 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCCCCCCCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhH
Q 021254 133 PLREPIAGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYA 211 (315)
Q Consensus 133 lP~~~~~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA 211 (315)
.|......+.+.+|+|||+|||-=... ..-|.+++-+..+. ....++|.|+.++.-+
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~----------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV 76 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNP----------------------DATPELRAWLAELKEAGIKVVVVSNNKESRV 76 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCC----------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHH
Confidence 344455688999999999999975321 13688999999999 5699999999999999
Q ss_pred HHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCch
Q 021254 212 GQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQ 263 (315)
Q Consensus 212 ~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~ 263 (315)
..++..||-.- + ++-- .-....+-|.|..++.++++|++|-|.-.
T Consensus 77 ~~~~~~l~v~f--i----~~A~-KP~~~~fr~Al~~m~l~~~~vvmVGDqL~ 121 (175)
T COG2179 77 ARAAEKLGVPF--I----YRAK-KPFGRAFRRALKEMNLPPEEVVMVGDQLF 121 (175)
T ss_pred HhhhhhcCCce--e----eccc-CccHHHHHHHHHHcCCChhHEEEEcchhh
Confidence 99999998763 1 1111 00012367888899999999999999765
No 99
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.06 E-value=0.0095 Score=53.45 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=83.7
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCc------------h
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQ------------S 208 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~------------~ 208 (315)
.++|+||.||||.--........+ -..+.||+.+-|..+. ..|.+||+|..+ .
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~--------------~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLD--------------DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHH--------------HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 678999999999874321111000 1236899999999997 579999999943 2
Q ss_pred hhHHHHHHHhCCCCCeeeeEEEecc-----eeeeC---CcccccccccCCCCCcEEEEECCchhhccCCCC---eeeecc
Q 021254 209 IYAGQLLDILDPNQTLIGQRVYRDS-----CVFAD---GEYLKDLTILGRDLARIAIVDNTPQVFQLQVDN---GIPIES 277 (315)
Q Consensus 209 ~YA~~vL~~LDp~~~~f~~rl~Re~-----C~~~~---g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~N---gI~I~~ 277 (315)
.+-..+++.|--.+.-|+.++++-| |.+.+ |.+..-+...+.|+++.++|=|+..-....... ++.+..
T Consensus 71 ~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~ 150 (181)
T COG0241 71 KLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLT 150 (181)
T ss_pred HHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEc
Confidence 3334466666666667899998533 66655 346666677789999999999996644222222 555555
Q ss_pred ccCC
Q 021254 278 WFGD 281 (315)
Q Consensus 278 f~~d 281 (315)
|.+.
T Consensus 151 ~~~~ 154 (181)
T COG0241 151 GIGV 154 (181)
T ss_pred Cccc
Confidence 5543
No 100
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.06 E-value=0.017 Score=51.68 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=47.5
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+.+++||||||+.... ...|...+-|+++. +...++|-|......+..+++.++..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 4789999999997421 14678888899998 56999999999999999999999876
Q ss_pred C
Q 021254 222 Q 222 (315)
Q Consensus 222 ~ 222 (315)
.
T Consensus 59 ~ 59 (215)
T TIGR01487 59 G 59 (215)
T ss_pred C
Confidence 4
No 101
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.04 E-value=0.012 Score=51.94 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=74.6
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHh-hcccEEEEEcCCchhhHHHHHHHhC
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAV-ASMFDVVIFTAGQSIYAGQLLDILD 219 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l-~~~fEIvIfTas~~~YA~~vL~~LD 219 (315)
.-+.+|||.||+|-.-+..-.. .+.... -+..|-+.- ++.| .+.+.++|.|+....++..+++.+.
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~----------~g~~~~-~~~~~D~~~--~~~L~~~Gi~laIiT~k~~~~~~~~l~~lg 72 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVIND----------EGIESR-NFDIKDGMG--VIVLQLCGIDVAIITSKKSGAVRHRAEELK 72 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcC----------CCcEEE-EEecchHHH--HHHHHHCCCEEEEEECCCcHHHHHHHHHCC
Confidence 3678999999999987532111 111111 122344432 2233 3679999999999999999999998
Q ss_pred CCCCeeeeEEEecceeeeC-CcccccccccCCCCCcEEEEECCchhhccCCCCeeeec
Q 021254 220 PNQTLIGQRVYRDSCVFAD-GEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 220 p~~~~f~~rl~Re~C~~~~-g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~ 276 (315)
... +|... ..+ ..+..-+..+|.++++++.|.|++.-.......|+.+-
T Consensus 73 i~~-~f~~~-------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~a 122 (169)
T TIGR02726 73 IKR-FHEGI-------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVA 122 (169)
T ss_pred CcE-EEecC-------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 764 56532 111 13455566779999999999999986654444554443
No 102
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.99 E-value=0.02 Score=53.42 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+.++.+++||||||+++... .-|-..+-|+++. +...++|.|......+..+++.+
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~-----------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY-----------------------DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc-----------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 45778999999999986321 2345667788887 67999999999999999999999
Q ss_pred CCC
Q 021254 219 DPN 221 (315)
Q Consensus 219 Dp~ 221 (315)
+..
T Consensus 62 ~~~ 64 (271)
T PRK03669 62 GLQ 64 (271)
T ss_pred CCC
Confidence 764
No 103
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.89 E-value=0.026 Score=51.85 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=44.0
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
.+.+++||||||+.+... ..|...+-|+++. +...++|-|......+..+++.++.
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (272)
T PRK10530 3 YRVIALDLDGTLLTPKKT-----------------------ILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALAL 59 (272)
T ss_pred ccEEEEeCCCceECCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 468899999999986421 3455667777777 5688888888888888888888876
Q ss_pred CC
Q 021254 221 NQ 222 (315)
Q Consensus 221 ~~ 222 (315)
..
T Consensus 60 ~~ 61 (272)
T PRK10530 60 DT 61 (272)
T ss_pred CC
Confidence 53
No 104
>PTZ00445 p36-lilke protein; Provisional
Probab=95.89 E-value=0.012 Score=54.23 Aligned_cols=132 Identities=11% Similarity=0.090 Sum_probs=80.1
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhh-------
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIY------- 210 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~Y------- 210 (315)
..+-+.+++|||.|||..-.-...+++ +....+.-..||.+..++++|. ..+.|+|-|-+.+..
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~--------~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~ 111 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPD--------NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRP 111 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCC--------cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCc
Confidence 467889999999999873211111110 0011223447999999999998 579999999988754
Q ss_pred --------HHHHHHHhCCCCCeeeeEE------Eecceee-----eC---Cc--c--cccccccCCCCCcEEEEECCchh
Q 021254 211 --------AGQLLDILDPNQTLIGQRV------YRDSCVF-----AD---GE--Y--LKDLTILGRDLARIAIVDNTPQV 264 (315)
Q Consensus 211 --------A~~vL~~LDp~~~~f~~rl------~Re~C~~-----~~---g~--y--~KDL~~Lgrdl~~vIIIDDsp~~ 264 (315)
+...|+.=.-+- -+..++ +.+.-.+ .+ +. | .+-++..|.+++.+++|||++..
T Consensus 112 ~~Isg~~li~~~lk~s~~~~-~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 112 RYISGDRMVEAALKKSKCDF-KIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred ceechHHHHHHHHHhcCccc-eeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 444554322221 111111 1221111 11 11 3 44456669999999999999998
Q ss_pred hccCCCCeeeecccc
Q 021254 265 FQLQVDNGIPIESWF 279 (315)
Q Consensus 265 ~~~q~~NgI~I~~f~ 279 (315)
+.....-|+..--+.
T Consensus 191 VeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 191 CKNALKEGYIALHVT 205 (219)
T ss_pred HHHHHHCCCEEEEcC
Confidence 876666676665554
No 105
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.85 E-value=0.0057 Score=56.05 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=66.7
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcEEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARIAI 257 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~vII 257 (315)
+..-||+.++|++|++.|.++|.|++... ++..+..+ +|+.++..+.....+. .|.+-++.+|.+++++++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~~-~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~ 185 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLGD-YFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILH 185 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcHH-hhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEE
Confidence 44559999999999988999999998765 35555543 7888887666544443 367778889999999999
Q ss_pred EECCc-hhhccCCCCeeee
Q 021254 258 VDNTP-QVFQLQVDNGIPI 275 (315)
Q Consensus 258 IDDsp-~~~~~q~~NgI~I 275 (315)
|.|++ .-......+|+..
T Consensus 186 VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred EcCCcHHHHHHHHHCCCeE
Confidence 99995 5554555666665
No 106
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=95.85 E-value=0.021 Score=52.70 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=46.7
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
.+.+++||||||+++... .-|...+.|+++. +...++|-|......+..+++.++.
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDHT-----------------------ISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 467899999999986321 3566778888888 5699999999999999999999876
Q ss_pred C
Q 021254 221 N 221 (315)
Q Consensus 221 ~ 221 (315)
.
T Consensus 60 ~ 60 (270)
T PRK10513 60 E 60 (270)
T ss_pred C
Confidence 5
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=95.79 E-value=0.031 Score=50.13 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=47.0
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
.+.+++||||||+.+... ..|...+-|+++. +...++|-|......+.++++.+..
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (230)
T PRK01158 3 IKAIAIDIDGTITDKDRR-----------------------LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGT 59 (230)
T ss_pred eeEEEEecCCCcCCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 367899999999975321 4677888888888 5689999999999999999999876
Q ss_pred CC
Q 021254 221 NQ 222 (315)
Q Consensus 221 ~~ 222 (315)
..
T Consensus 60 ~~ 61 (230)
T PRK01158 60 SG 61 (230)
T ss_pred CC
Confidence 64
No 108
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.73 E-value=0.024 Score=51.01 Aligned_cols=94 Identities=6% Similarity=0.043 Sum_probs=62.2
Q ss_pred eEeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEE--ecceeeeCCc-------------ccc
Q 021254 180 FVRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVY--RDSCVFADGE-------------YLK 243 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~--Re~C~~~~g~-------------y~K 243 (315)
.+.+|||+.+||+.+.+ .+.++|.|++...+++++++.+.+...++..++. .+........ -.+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 37899999999999995 6999999999999999999998554333332222 1111111110 012
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCCee
Q 021254 244 DLTILGRDLARIAIVDNTPQVFQLQVDNGI 273 (315)
Q Consensus 244 DL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI 273 (315)
-+..++...+++|.|-|+..-+......++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 233445567889999999987654444444
No 109
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=95.59 E-value=0.033 Score=51.72 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=44.0
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+.+++||||||+.+... .-|...+-|+++. +...++|-|......+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~~-----------------------i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDHH-----------------------LGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCCc-----------------------CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 57899999999986321 3566677788887 56888888888888888888888765
Q ss_pred C
Q 021254 222 Q 222 (315)
Q Consensus 222 ~ 222 (315)
.
T Consensus 60 ~ 60 (272)
T PRK15126 60 A 60 (272)
T ss_pred C
Confidence 4
No 110
>PRK10976 putative hydrolase; Provisional
Probab=95.57 E-value=0.033 Score=51.37 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=42.8
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+.+++||||||+++... .-|...+-|+++. +...++|-|.-....+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~~-----------------------is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDHT-----------------------LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCCc-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 57899999999987421 3455667777777 56888888888888888888887665
Q ss_pred C
Q 021254 222 Q 222 (315)
Q Consensus 222 ~ 222 (315)
.
T Consensus 60 ~ 60 (266)
T PRK10976 60 S 60 (266)
T ss_pred C
Confidence 3
No 111
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.57 E-value=0.031 Score=51.20 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=43.6
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+++||||||++... .-|...++|+++. +...+++.|..+...+..+++.++..
T Consensus 2 i~~DlDGTLl~~~~------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGY------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCC------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 68899999999421 2356889999999 56999999999999888999988754
No 112
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.56 E-value=0.032 Score=51.25 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=44.4
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQ 222 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~ 222 (315)
+++||||||+..... ..|...+.|+++. +...++|-|......+..+++.+....
T Consensus 2 i~~DlDGTLl~~~~~-----------------------i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 2 IFIDLDGTLLNDDHT-----------------------ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred EEEeCCCCCCCCCCc-----------------------cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 789999999986321 3567788888888 569999999999998888988887653
No 113
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.44 E-value=0.037 Score=49.58 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=43.8
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+++||||||+.+... .-|-..+.|+.+. +...++|.|......+..+++.+...
T Consensus 2 i~~DlDGTLL~~~~~-----------------------~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-----------------------DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC-----------------------CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999986321 1223778999988 56999999999999999999998754
No 114
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=95.34 E-value=0.052 Score=51.81 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=68.4
Q ss_pred eEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC---CCeeeeEEEecceeeeCC---c----ccc-----
Q 021254 180 FVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN---QTLIGQRVYRDSCVFADG---E----YLK----- 243 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~---~~~f~~rl~Re~C~~~~g---~----y~K----- 243 (315)
-+.+|||+.+|+++|. ....++|+|+|...+++.+++.++-. ...++.++--+......| . +.|
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 3778999999999998 56999999999999999999986542 234455543322111111 1 122
Q ss_pred --cccccC--CCCCcEEEEECCchhhcc-----CCCCeeeeccccCCCCCh
Q 021254 244 --DLTILG--RDLARIAIVDNTPQVFQL-----QVDNGIPIESWFGDPSDS 285 (315)
Q Consensus 244 --DL~~Lg--rdl~~vIIIDDsp~~~~~-----q~~NgI~I~~f~~d~~D~ 285 (315)
..+.++ .+.++||+|.|+..-..+ +.+|.|.| +|-.+.-+.
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfln~~~e~ 248 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYLNDRVDE 248 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-EecccCHHH
Confidence 222345 788999999999985422 23455554 455554444
No 115
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.25 E-value=0.021 Score=58.15 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=76.1
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecC-eeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKM-EVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~-~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~ 216 (315)
...+++||||||+||+--..-.-. .-.+.... .....| --+++|+..+. +.+=++|.|-....-|..+..
T Consensus 219 g~~kK~LVLDLDNTLWGGVIGedG----v~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~ 290 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVIGEDG----VDGIRLSNSAEGEAF----KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFR 290 (574)
T ss_pred CcccceEEEecCCccccccccccc----ccceeecCCCCchhH----HHHHHHHHHHHhccEEEEEecCCchhhHHHHHh
Confidence 467889999999999987532110 00111110 011111 12567777777 678899999999999988876
Q ss_pred HhCCCCCeeeeE-EEecceeee-C-CcccccccccCCCCCcEEEEECCchhhccCCCCe-eeecccc
Q 021254 217 ILDPNQTLIGQR-VYRDSCVFA-D-GEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNG-IPIESWF 279 (315)
Q Consensus 217 ~LDp~~~~f~~r-l~Re~C~~~-~-g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~Ng-I~I~~f~ 279 (315)
.. |+- +++.- +..-.|... + .+..|-..+|+..+.-.|+|||+|.....-..++ +.|..+-
T Consensus 291 kh-p~M-iLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 291 KH-PDM-ILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFP 355 (574)
T ss_pred hC-CCe-EeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence 54 221 11100 001112211 2 2456777889999999999999998764332222 4455443
No 116
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=95.03 E-value=0.057 Score=48.19 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=42.5
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+++||||||+++... ..|-..+-|+++. +...+++-|......+..+++.++..
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNRA-----------------------INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred CeEeccCccCCCCcc-----------------------cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 579999999986421 3566677788887 56899999999988888888888743
No 117
>PRK10444 UMP phosphatase; Provisional
Probab=94.97 E-value=0.049 Score=50.80 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=44.4
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILD 219 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LD 219 (315)
+.+++|+||||++... .=|++.++|+++. +...+++.|+....-+..+.+.|.
T Consensus 2 ~~v~~DlDGtL~~~~~------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 2 KNVICDIDGVLMHDNV------------------------AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred cEEEEeCCCceEeCCe------------------------eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999741 3689999999999 579999999999887777777764
No 118
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=94.86 E-value=0.062 Score=46.73 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=42.4
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHH---HHHHHh
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAG---QLLDIL 218 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~---~vL~~L 218 (315)
+++|+||||+.+..... .... + + .. ...|++.++++++. +.+.+++.|+.....+. +.++.+
T Consensus 2 VisDIDGTL~~sd~~~~-----~~~~-~-~--~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGH-----VVPI-I-G--KD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCcccccccc-----cccc-c-c--cC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 78999999998742100 0000 0 0 01 24799999999999 57999999998877774 666664
No 119
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=94.76 E-value=0.058 Score=47.66 Aligned_cols=52 Identities=29% Similarity=0.288 Sum_probs=43.0
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHh
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~L 218 (315)
+++|+||||+.+... ...|.+.+.|+++.+ ...++|-|......+..+++.+
T Consensus 2 i~~D~DgTL~~~~~~----------------------~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 2 LFFDLDGTLLDPNAH----------------------ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred EEEeCcCCCcCCCCC----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 789999999985210 146889999999995 4899999999999999999875
No 120
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=94.71 E-value=0.095 Score=44.79 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=57.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC--------------ccccc-
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG--------------EYLKD- 244 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g--------------~y~KD- 244 (315)
+..+||+.++|+.+. ..+.++|.|++...+++.+++.++... +|...+.-+......| ..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~ 150 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKEL 150 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEEECCCCEEeCccCCcccCCcchHHHHHHHH
Confidence 567999999999998 569999999999999999999997764 6665554321111011 11122
Q ss_pred ccccCCCCCcEEEEECCchhh
Q 021254 245 LTILGRDLARIAIVDNTPQVF 265 (315)
Q Consensus 245 L~~Lgrdl~~vIIIDDsp~~~ 265 (315)
+..+|.++++++.|-|+..-.
T Consensus 151 ~~~~~~~~~~~~~iGDs~~D~ 171 (177)
T TIGR01488 151 LEESKITLKKIIAVGDSVNDL 171 (177)
T ss_pred HHHhCCCHHHEEEEeCCHHHH
Confidence 223356677888888877543
No 121
>PTZ00174 phosphomannomutase; Provisional
Probab=94.64 E-value=0.073 Score=49.12 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=39.7
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHH
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~ 216 (315)
+.+.+++||||||+++... .-|...+-|+++. +...++|-|.....-+...+.
T Consensus 4 ~~klia~DlDGTLL~~~~~-----------------------is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-----------------------ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 3578999999999987532 3567778888888 569999999877665555444
No 122
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=94.59 E-value=0.093 Score=48.38 Aligned_cols=54 Identities=20% Similarity=0.100 Sum_probs=43.7
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+++||||||++.... ..+...+.++++.+ ...+++-|......+..+++.++..
T Consensus 2 i~~DlDGTll~~~~~-----------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-----------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCc-----------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999987421 13357899999984 6999999999999999999998754
No 123
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=94.35 E-value=0.059 Score=50.57 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCce---e-ee-------------eecC-----eeeeeeEeeCchHHHHHHHhh-cc
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFS---F-PI-------------HSKM-----EVQTVFVRQRPYLHMFLEAVA-SM 197 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~---~-~i-------------~~~~-----~~~~~yV~lRP~l~eFL~~l~-~~ 197 (315)
....||||+|+||+-+. .....+.+. + .+ .+.. ....-+...-|.+-++++.++ +.
T Consensus 19 ~~tLvvfDiDdTLi~~~-~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPK-QPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCc-cccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 56789999999999876 232222110 0 00 0000 011223556799999999999 67
Q ss_pred cEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecc---------------eeeeCC-----------cccccccccCCC
Q 021254 198 FDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDS---------------CVFADG-----------EYLKDLTILGRD 251 (315)
Q Consensus 198 fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~---------------C~~~~g-----------~y~KDL~~Lgrd 251 (315)
..++..|+....+...-++.|-.-|--|+...+++. -.+.+| ....=|..+|..
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~ 177 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS 177 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence 999999999999999888886332222222211111 111122 123445567999
Q ss_pred CCcEEEEECCchhh----ccCCCCeeeecccc
Q 021254 252 LARIAIVDNTPQVF----QLQVDNGIPIESWF 279 (315)
Q Consensus 252 l~~vIIIDDsp~~~----~~q~~NgI~I~~f~ 279 (315)
++++|+|||+.... ......+|..-+++
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 99999999999854 22344788877774
No 124
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=94.28 E-value=0.086 Score=45.85 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=53.3
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhh--HHHHHHHhCCCCCee--eeEEEecceeeeCCcccccccccCCCCCcEE
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIY--AGQLLDILDPNQTLI--GQRVYRDSCVFADGEYLKDLTILGRDLARIA 256 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~Y--A~~vL~~LDp~~~~f--~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vI 256 (315)
...-||+++.+++|-++|+|+|-||++..+ ...-.+.|--.-.++ ++.+++.. |.+ +. -=|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn---------Kni--vk----aDi 131 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN---------KNI--VK----ADI 131 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC---------CCe--EE----eeE
Confidence 445799999999999999999999995443 333333332111111 12222221 221 11 137
Q ss_pred EEECCchhhccCCCCeeeeccccCCC
Q 021254 257 IVDNTPQVFQLQVDNGIPIESWFGDP 282 (315)
Q Consensus 257 IIDDsp~~~~~q~~NgI~I~~f~~d~ 282 (315)
+|||.|........|-|....-....
T Consensus 132 lIDDnp~nLE~F~G~kIlFdA~HN~n 157 (180)
T COG4502 132 LIDDNPLNLENFKGNKILFDAHHNKN 157 (180)
T ss_pred EecCCchhhhhccCceEEEecccccC
Confidence 89999998877777877766655443
No 125
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.20 E-value=0.075 Score=46.71 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=58.6
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEe-cceeee---CCc----------cccccc
Q 021254 182 RQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYR-DSCVFA---DGE----------YLKDLT 246 (315)
Q Consensus 182 ~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~R-e~C~~~---~g~----------y~KDL~ 246 (315)
..+|++.++|+++. +.+.++|-|++...+++.+++.++-.. +|..++.. ++-.+. .|. ...-+.
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 47999999999998 579999999999999999999998775 67664442 210111 010 111123
Q ss_pred ccCCCCCcEEEEECCchhhc
Q 021254 247 ILGRDLARIAIVDNTPQVFQ 266 (315)
Q Consensus 247 ~Lgrdl~~vIIIDDsp~~~~ 266 (315)
..+.++++++.+-|++.-..
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~ 185 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLP 185 (202)
T ss_pred HcCCCHHHcEeeeCCcccHH
Confidence 34677788888888887553
No 126
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.18 E-value=0.14 Score=49.45 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=45.1
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+.+++||||||+++.. | .-+-+.+-|++|. +...+++.|+-+..-+..+.+.|...
T Consensus 2 KLIftDLDGTLLd~~~---------------------~--~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF---------------------N--SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCC---------------------c--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 5788899999998642 1 2344778889998 56999999999988888899998765
Q ss_pred C
Q 021254 222 Q 222 (315)
Q Consensus 222 ~ 222 (315)
.
T Consensus 59 ~ 59 (302)
T PRK12702 59 H 59 (302)
T ss_pred C
Confidence 3
No 127
>PLN02645 phosphoglycolate phosphatase
Probab=94.18 E-value=0.089 Score=50.46 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=42.8
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+-+.++||+||||++... .=||+.++|+++. +...+++-|+........+++.|
T Consensus 27 ~~~~~~~D~DGtl~~~~~------------------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDK------------------------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred hCCEEEEeCcCCeEeCCc------------------------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 456899999999998631 1399999999998 68999999998866666666554
No 128
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=94.11 E-value=0.12 Score=48.62 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=44.2
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc--ccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS--MFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~--~fEIvIfTas~~~YA~~vL~~ 217 (315)
.++..+++|+||||+.....+.. ...-|.+.+-|+.|++ ...++|-|.....-+..++..
T Consensus 12 ~~~~li~~D~DGTLl~~~~~p~~------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~ 73 (266)
T PRK10187 12 SANYAWFFDLDGTLAEIKPHPDQ------------------VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKP 73 (266)
T ss_pred CCCEEEEEecCCCCCCCCCCccc------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCc
Confidence 44688999999999986432211 0135788888888875 578888888888888777755
Q ss_pred h
Q 021254 218 L 218 (315)
Q Consensus 218 L 218 (315)
+
T Consensus 74 ~ 74 (266)
T PRK10187 74 Y 74 (266)
T ss_pred c
Confidence 4
No 129
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.95 E-value=0.1 Score=48.74 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=39.0
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHH
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~ 217 (315)
+.++||+||||++..... . ..=|++.++|+++. +...+++.|..+..-...+.+.
T Consensus 2 k~i~~D~DGtl~~~~~~~-~-------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~ 57 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS-G-------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLER 57 (257)
T ss_pred CEEEEeCCCeEEeCCCcc-c-------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 478999999999874200 0 03589999999999 5799999998765543333333
No 130
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=93.80 E-value=0.23 Score=52.83 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=46.8
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~ 217 (315)
..+++.+++||||||+++.. ++ -+...+-|+++. +...+++.|.-+...+..+++.
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~---------------------~i--~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT---------------------YS--YSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred CceeeEEEEECcCCCcCCCC---------------------cc--CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 37788889999999998742 11 123456788887 5699999999999999999999
Q ss_pred hCCC
Q 021254 218 LDPN 221 (315)
Q Consensus 218 LDp~ 221 (315)
++..
T Consensus 470 Lgl~ 473 (694)
T PRK14502 470 LGIK 473 (694)
T ss_pred cCCC
Confidence 8754
No 131
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=93.78 E-value=0.12 Score=48.59 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=34.5
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchh
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSI 209 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~ 209 (315)
..+++|+||||++... .-|++.++|+++. +...+++.|+.+..
T Consensus 3 ~~~~~D~DGtl~~~~~------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns~~ 46 (279)
T TIGR01452 3 QGFIFDCDGVLWLGER------------------------VVPGAPELLDRLARAGKAALFVTNNSTK 46 (279)
T ss_pred cEEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4788999999988631 3588999999999 57899999986543
No 132
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.74 E-value=0.099 Score=50.39 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=41.7
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc-----ccEEEEEcCCc----hhhHHH
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS-----MFDVVIFTAGQ----SIYAGQ 213 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~-----~fEIvIfTas~----~~YA~~ 213 (315)
+.++||+||||+++.. .-|++.++++.+.. ...+++.|+.. +.+++.
T Consensus 1 ~~~ifD~DGvL~~g~~------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~ 56 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEE 56 (321)
T ss_pred CEEEEeCcCceECCcc------------------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHH
Confidence 3689999999999853 36899999999995 78899999775 456666
Q ss_pred HHHHhC
Q 021254 214 LLDILD 219 (315)
Q Consensus 214 vL~~LD 219 (315)
+.+.++
T Consensus 57 l~~~lG 62 (321)
T TIGR01456 57 ISSLLG 62 (321)
T ss_pred HHHHcC
Confidence 656554
No 133
>PLN02423 phosphomannomutase
Probab=93.51 E-value=0.16 Score=47.08 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhC
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILD 219 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LD 219 (315)
+.+..+++||||||+.+... .-|...+.|++|.+...+++.|.... ..+.+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~-----------------------i~~~~~~ai~~l~~~i~fviaTGR~~---~~~~~~~~ 58 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKE-----------------------ATPEMLEFMKELRKVVTVGVVGGSDL---SKISEQLG 58 (245)
T ss_pred ccceEEEEeccCCCcCCCCc-----------------------CCHHHHHHHHHHHhCCEEEEECCcCH---HHHHHHhc
Confidence 34556669999999987432 35777888999997788888887633 34555554
Q ss_pred C
Q 021254 220 P 220 (315)
Q Consensus 220 p 220 (315)
+
T Consensus 59 ~ 59 (245)
T PLN02423 59 K 59 (245)
T ss_pred c
Confidence 4
No 134
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=93.38 E-value=0.14 Score=46.35 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=57.7
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC----------cccccccccCC
Q 021254 181 VRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG----------EYLKDLTILGR 250 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g----------~y~KDL~~Lgr 250 (315)
+.++||+.+||+++.+.+.++|-|++...++.++++.++.+. +|..++--++.....| ..++-+...|
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~- 144 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY- 144 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC-
Confidence 568999999999999778999999999999999999998875 6765544332111111 1233333333
Q ss_pred CCCcEEEEECCchhhc
Q 021254 251 DLARIAIVDNTPQVFQ 266 (315)
Q Consensus 251 dl~~vIIIDDsp~~~~ 266 (315)
.+++.|-|+..-..
T Consensus 145 --~~~v~vGDs~nDl~ 158 (203)
T TIGR02137 145 --YRVIAAGDSYNDTT 158 (203)
T ss_pred --CCEEEEeCCHHHHH
Confidence 36889988887543
No 135
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=93.13 E-value=0.13 Score=48.03 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=41.4
Q ss_pred EeeCchHHHHHHHhh---cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEE
Q 021254 181 VRQRPYLHMFLEAVA---SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVY 230 (315)
Q Consensus 181 V~lRP~l~eFL~~l~---~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~ 230 (315)
+..-||+.+|++.++ ..++++|-|-|...|.+.+|++-+... +|+.++.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccceEEe
Confidence 677899999999994 479999999999999999999988764 5555444
No 136
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=92.94 E-value=0.21 Score=46.31 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=38.0
Q ss_pred eEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCc---hhhHHHHHHHh
Q 021254 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQ---SIYAGQLLDIL 218 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~---~~YA~~vL~~L 218 (315)
..+++|+||||+.... .=|++.++|+++. +...+++.|..+ ..-....++.+
T Consensus 2 ~~~~~D~DGtl~~~~~------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~ 57 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE------------------------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF 57 (249)
T ss_pred CEEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 3789999999998632 2368899999998 679999999633 33333444545
Q ss_pred CC
Q 021254 219 DP 220 (315)
Q Consensus 219 Dp 220 (315)
+.
T Consensus 58 g~ 59 (249)
T TIGR01457 58 DI 59 (249)
T ss_pred CC
Confidence 43
No 137
>PLN02887 hydrolase family protein
Probab=92.94 E-value=0.22 Score=52.15 Aligned_cols=59 Identities=20% Similarity=0.092 Sum_probs=47.3
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
.+.+.+++||||||+.+... .-|...+-|+++. +...++|-|.-...-+..+++.+
T Consensus 306 ~~iKLIa~DLDGTLLn~d~~-----------------------Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKSQ-----------------------ISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred cCccEEEEeCCCCCCCCCCc-----------------------cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 45668899999999987421 3566678888888 67999999999999999999988
Q ss_pred CCC
Q 021254 219 DPN 221 (315)
Q Consensus 219 Dp~ 221 (315)
+..
T Consensus 363 ~l~ 365 (580)
T PLN02887 363 DLA 365 (580)
T ss_pred Ccc
Confidence 754
No 138
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=92.19 E-value=0.27 Score=46.82 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=42.9
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+..+++|||||||++... .=||+.+||+++. +.-.+++-|++..+-.+.+.++|
T Consensus 7 ~y~~~l~DlDGvl~~G~~------------------------~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNE------------------------AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hcCEEEEcCcCceEeCCc------------------------cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 345789999999998743 3599999999999 55999999999876666555554
No 139
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=92.05 E-value=0.29 Score=44.92 Aligned_cols=60 Identities=25% Similarity=0.109 Sum_probs=42.5
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcc-cEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASM-FDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~-fEIvIfTas~~~YA~~vL~~LDp 220 (315)
++.++.||||||+.+... + -...|.+.+.++++.+. -.+++-|..+..-+.++++.+.+
T Consensus 1 ~~li~tDlDGTLl~~~~~-----~---------------~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDG-----D---------------NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred CeEEEEcCCCcCcCCCCC-----C---------------hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 357888999999974211 0 01468888888888854 47777777777778888776655
Q ss_pred C
Q 021254 221 N 221 (315)
Q Consensus 221 ~ 221 (315)
.
T Consensus 61 ~ 61 (249)
T TIGR01485 61 L 61 (249)
T ss_pred C
Confidence 4
No 140
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.52 Score=42.81 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=38.2
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCC
Q 021254 181 VRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQ 222 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~ 222 (315)
++.|||.++|.+++.+ .-.++|-|+|+..|..++++.+--+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke 114 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKE 114 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccc
Confidence 7899999999999995 59999999999999999999987554
No 141
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.04 E-value=0.33 Score=44.55 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=37.5
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCc----hhhHHHHHHHh
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQ----SIYAGQLLDIL 218 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~----~~YA~~vL~~L 218 (315)
++||+||||+.... .=|++.++|+.+. +.+.+++-|++. ..+++.+.+++
T Consensus 1 ~lfD~DGvL~~~~~------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred CEEeCcCccCcCCc------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999742 2468999999998 469999998555 45666666643
No 142
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=89.84 E-value=0.78 Score=47.72 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=58.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVD 259 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIID 259 (315)
-..||++.+++++|+ ..++++|-|+..+.+|+.+++.++.+ +|. +-....+...++.+ ....++|++|-
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~-----~~~p~~K~~~v~~l---~~~~~~v~~VG 473 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRA-----EVLPDDKAALIKEL---QEKGRVVAMVG 473 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEc-----cCChHHHHHHHHHH---HHcCCEEEEEe
Confidence 457999999999998 46999999999999999999999764 222 11111122233333 34567899999
Q ss_pred CCchhhccCCCCeeee
Q 021254 260 NTPQVFQLQVDNGIPI 275 (315)
Q Consensus 260 Dsp~~~~~q~~NgI~I 275 (315)
|...-...-...++.|
T Consensus 474 Dg~nD~~al~~A~vgi 489 (562)
T TIGR01511 474 DGINDAPALAQADVGI 489 (562)
T ss_pred CCCccHHHHhhCCEEE
Confidence 9987654433444544
No 143
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=89.77 E-value=0.33 Score=45.18 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=53.8
Q ss_pred CCCeEEEEeCCcceeceecCC----CCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDN----CKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQL 214 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~----~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~v 214 (315)
.+|..+|||+|+|++....-. -....|.- ..|..-....--..-|++.+|++.+. ..++|++.|.-........
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~-~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T 153 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDP-TAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNAT 153 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCH-HHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 578899999999999976300 00000100 00000000001235699999999997 6899999999988775555
Q ss_pred HHHhCCCCCe-eeeEEEec
Q 021254 215 LDILDPNQTL-IGQRVYRD 232 (315)
Q Consensus 215 L~~LDp~~~~-f~~rl~Re 232 (315)
++.|.-.|-. +.+.+.|.
T Consensus 154 ~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 154 LDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHcCCCCcCeeeecC
Confidence 5555433311 24455554
No 144
>PLN02151 trehalose-phosphatase
Probab=89.47 E-value=0.62 Score=46.06 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~ 216 (315)
..++..|+||+||||+--...|. -+..-|.+.+-|+.|++.+.++|-|.-...-++.++.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~------------------~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPD------------------RAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcc------------------cccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 35678899999999995432211 1235789999999999889999999988888877764
No 145
>PLN02580 trehalose-phosphatase
Probab=89.06 E-value=0.7 Score=46.16 Aligned_cols=61 Identities=23% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~ 217 (315)
..++..|+||.||||+--...|. -+..-|.+.+-|+.|++.+.++|-|.-...-++.++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~Pd------------------~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDDPD------------------RALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred hcCCeEEEEecCCccCCCCCCcc------------------cccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 35778899999999986543221 13356899999999999999999999998888887754
No 146
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=88.90 E-value=0.24 Score=46.66 Aligned_cols=79 Identities=24% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCCCeEEEEeCCcceeceecCC----CCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcc-cEEEEEcCCchhh-HH
Q 021254 139 AGLPITLVLDLDETLVHSSFDN----CKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASM-FDVVIFTAGQSIY-AG 212 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~----~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~-fEIvIfTas~~~Y-A~ 212 (315)
..+++.+|+|||||.++-+.-. ..+..|+ +-.|+.-...---+.=||+.+||+++-++ -.|.--|...++. .+
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~-pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~ 154 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFT-PETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKD 154 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCC-ccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccc
Confidence 4566699999999999976311 1111110 00000000001123459999999999965 4454445555555 44
Q ss_pred HHHHHh
Q 021254 213 QLLDIL 218 (315)
Q Consensus 213 ~vL~~L 218 (315)
.-++.|
T Consensus 155 ~T~~nL 160 (274)
T COG2503 155 GTIENL 160 (274)
T ss_pred hhHHHH
Confidence 445544
No 147
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=88.72 E-value=0.42 Score=42.25 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=43.7
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchh----hHHHHHHHhCCC--CCeeeeEEEecceeeeCCcccccccccCCCCC
Q 021254 181 VRQRPYLHMFLEAVASM-FDVVIFTAGQSI----YAGQLLDILDPN--QTLIGQRVYRDSCVFADGEYLKDLTILGRDLA 253 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~~-fEIvIfTas~~~----YA~~vL~~LDp~--~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~ 253 (315)
...-||+.+.|++|.+. +++++-|++... .+..-.+.|+.. +......++..+ |. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~---------K~--~v~~D-- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD---------KT--LVGGD-- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS---------GG--GC--S--
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC---------CC--eEecc--
Confidence 45669999999999965 688888887654 233333333221 111222333221 22 34444
Q ss_pred cEEEEECCchhhccCCCCeeee
Q 021254 254 RIAIVDNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 254 ~vIIIDDsp~~~~~q~~NgI~I 275 (315)
|+|||+|.........|+++
T Consensus 139 --vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 139 --VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp --EEEESSSHHHSS-SSESSEE
T ss_pred --EEecCChHHHHhccCCCceE
Confidence 89999999886666677444
No 148
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=88.42 E-value=0.75 Score=43.73 Aligned_cols=60 Identities=22% Similarity=0.108 Sum_probs=47.2
Q ss_pred CCCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccE--EEEEcCCchhhHHHHHH
Q 021254 139 AGLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFD--VVIFTAGQSIYAGQLLD 216 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fE--IvIfTas~~~YA~~vL~ 216 (315)
..+|.+++||.||||++....|.. +..=+++.+.|..|+..+. ++|.|.-+..-.+..+.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~p~~------------------a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPHPEA------------------AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred cccceEEEEeccccccccccCccc------------------cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 477889999999999998754332 2245788999999998887 88888888877777776
No 149
>PLN03017 trehalose-phosphatase
Probab=87.21 E-value=1.1 Score=44.63 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=45.0
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~ 217 (315)
.++..|+||+||||+--...+. -...-|.+.+-|++|++.+.++|-|.-...-+..++..
T Consensus 109 ~k~~llflD~DGTL~Piv~~p~------------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~l 168 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDPD------------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVKL 168 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCcc------------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhcc
Confidence 5678889999999994322110 01246888999999999999999999988888877543
No 150
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=86.84 E-value=0.64 Score=42.78 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccE--EEEEcCCc
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFD--VVIFTAGQ 207 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fE--IvIfTas~ 207 (315)
++..|+||+||||+.....|. .+..-|++.+.|+.|.+... |+|-|.-.
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPD------------------AAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCCCc------------------ccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 577899999999997532221 12346889999999987644 45666653
No 151
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=86.19 E-value=0.86 Score=39.68 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=58.3
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecce-eeeCCcccccccccCCCCCcEEEE
Q 021254 181 VRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSC-VFADGEYLKDLTILGRDLARIAIV 258 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C-~~~~g~y~KDL~~Lgrdl~~vIII 258 (315)
-..||++.++|++|.+ .+.++|.|......|..+.+.++... ..++.+.+ ......+.+-+..|+.+.+.|++|
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEEEEE
Confidence 5679999999999995 59999999999999999999997743 22332221 111112355566678888899999
Q ss_pred ECCch
Q 021254 259 DNTPQ 263 (315)
Q Consensus 259 DDsp~ 263 (315)
-|...
T Consensus 202 GDg~n 206 (215)
T PF00702_consen 202 GDGVN 206 (215)
T ss_dssp ESSGG
T ss_pred ccCHH
Confidence 99764
No 152
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=85.66 E-value=0.39 Score=42.34 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.2
Q ss_pred EEEEeCCcceeceec
Q 021254 144 TLVLDLDETLVHSSF 158 (315)
Q Consensus 144 tLVLDLDeTLVhs~~ 158 (315)
.++|||||||++|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 579999999999974
No 153
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=83.80 E-value=0.74 Score=43.08 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=69.0
Q ss_pred eEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCC---cccccccccCCCCCcE
Q 021254 180 FVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADG---EYLKDLTILGRDLARI 255 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g---~y~KDL~~Lgrdl~~v 255 (315)
+....|-+ ++|++++ +.+.|.|.|....++= .++..++.. .+|++.+..-.-...+. -|.+-|+.+|..++.+
T Consensus 112 ~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 112 WKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred ceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 34445555 9999999 6789999999988877 888888777 48988876433334443 3889999999999999
Q ss_pred EEEECCchh-hccCCCCeee
Q 021254 256 AIVDNTPQV-FQLQVDNGIP 274 (315)
Q Consensus 256 IIIDDsp~~-~~~q~~NgI~ 274 (315)
|.|||+... +.....-|+.
T Consensus 189 vhIgD~l~nD~~gA~~~G~~ 208 (237)
T KOG3085|consen 189 VHIGDLLENDYEGARNLGWH 208 (237)
T ss_pred EEecCccccccHhHHHcCCE
Confidence 999999987 6444444433
No 154
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=83.78 E-value=1.5 Score=43.24 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=44.1
Q ss_pred eeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh-C-----C-CCCeeeeEEE
Q 021254 178 TVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL-D-----P-NQTLIGQRVY 230 (315)
Q Consensus 178 ~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L-D-----p-~~~~f~~rl~ 230 (315)
.-||.+-|++.++|+++. +...+.|-|++...|++.+++.+ + + -..+|+.++.
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEe
Confidence 357888999999999998 56999999999999999999997 5 2 2447765555
No 155
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=83.69 E-value=1.6 Score=39.65 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=35.2
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
++.||||||+++... +.|.. +-++...+...++|-|.....-+..++..++..
T Consensus 2 i~~DlDgTLl~~~~~-----------------------~~~~~-~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 2 IITDLDNTLLGDDEG-----------------------LASFV-ELLRGSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred eEEeccccccCCHHH-----------------------HHHHH-HHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 688999999985321 12222 445533356778888888888888888777653
No 156
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=83.55 E-value=1.6 Score=40.75 Aligned_cols=41 Identities=15% Similarity=0.371 Sum_probs=35.5
Q ss_pred EeeCchHHHHHHHhhc--ccEEEEEcCCchhhHHHHHHHhCCC
Q 021254 181 VRQRPYLHMFLEAVAS--MFDVVIFTAGQSIYAGQLLDILDPN 221 (315)
Q Consensus 181 V~lRP~l~eFL~~l~~--~fEIvIfTas~~~YA~~vL~~LDp~ 221 (315)
+..-||+-+.++.+++ .||++|-|-+..-..+.+|++.+..
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 4456999999999984 4899999999999999999997654
No 157
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=83.35 E-value=2.3 Score=44.12 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=60.9
Q ss_pred EeeCchHHHHHHHhh-cc-cEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEE
Q 021254 181 VRQRPYLHMFLEAVA-SM-FDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIV 258 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~-fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIII 258 (315)
...|||+.+.|++|. +. ++++|-|...+.+|..+++.++.+. +|... . ...+...++. ++....+|++|
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~~-~----p~~K~~~v~~---l~~~~~~v~~v 453 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAEL-L----PEDKLAIVKE---LQEEGGVVAMV 453 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eeccC-C----HHHHHHHHHH---HHHcCCEEEEE
Confidence 458999999999998 56 9999999999999999999998864 55421 1 1112223333 34455689999
Q ss_pred ECCchhhccCCCCeeee
Q 021254 259 DNTPQVFQLQVDNGIPI 275 (315)
Q Consensus 259 DDsp~~~~~q~~NgI~I 275 (315)
-|...-...-...++-|
T Consensus 454 GDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 454 GDGINDAPALAAADVGI 470 (556)
T ss_pred ECChhHHHHHhhCCEeE
Confidence 99988654434444444
No 158
>PRK11590 hypothetical protein; Provisional
Probab=82.95 E-value=0.67 Score=41.63 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=35.0
Q ss_pred EeeCchHHHHH-HHhh-cccEEEEEcCCchhhHHHHHHHhC
Q 021254 181 VRQRPYLHMFL-EAVA-SMFDVVIFTAGQSIYAGQLLDILD 219 (315)
Q Consensus 181 V~lRP~l~eFL-~~l~-~~fEIvIfTas~~~YA~~vL~~LD 219 (315)
+..+||+.+.| +.++ +.+.++|-|++...++.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 5677 689999999999999999999977
No 159
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=82.67 E-value=1.3 Score=40.97 Aligned_cols=78 Identities=19% Similarity=0.090 Sum_probs=44.9
Q ss_pred CCCeEEEEeCCcceeceecC----CCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFD----NCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQL 214 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~----~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~v 214 (315)
.++..+|||+|||++....- ......|. +-.|..-....--..=|++.+|++.+. ..++|++-|.-....-+.-
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~-~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFS-PEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH--CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCC-hHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 56789999999999965321 00000000 000000000000134588999999999 5799999998877655555
Q ss_pred HHHh
Q 021254 215 LDIL 218 (315)
Q Consensus 215 L~~L 218 (315)
++.|
T Consensus 149 ~~nL 152 (229)
T PF03767_consen 149 EKNL 152 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 160
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=82.48 E-value=0.7 Score=41.01 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.9
Q ss_pred eEEEEeCCcceeceec
Q 021254 143 ITLVLDLDETLVHSSF 158 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~ 158 (315)
++++|||||||+++..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 5799999999999863
No 161
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=82.46 E-value=0.71 Score=40.54 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=13.1
Q ss_pred eEEEEeCCcceecee
Q 021254 143 ITLVLDLDETLVHSS 157 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~ 157 (315)
+.++|||||||+.+.
T Consensus 1 k~viFDlDGTL~d~~ 15 (203)
T TIGR02252 1 KLITFDAVGTLLALK 15 (203)
T ss_pred CeEEEecCCceeeeC
Confidence 368999999999985
No 162
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=82.42 E-value=0.76 Score=42.08 Aligned_cols=16 Identities=19% Similarity=0.163 Sum_probs=13.8
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
-++++||+||||+++.
T Consensus 2 ~k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFG 17 (253)
T ss_pred ceEEEEeCCCCeecCC
Confidence 3579999999999984
No 163
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=82.28 E-value=0.66 Score=39.82 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=14.0
Q ss_pred eEEEEeCCcceeceec
Q 021254 143 ITLVLDLDETLVHSSF 158 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~ 158 (315)
++++||+||||+++..
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 5789999999999964
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=82.17 E-value=2.6 Score=45.14 Aligned_cols=61 Identities=25% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc--ccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS--MFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~--~fEIvIfTas~~~YA~~vL~~ 217 (315)
.++..+++|+||||+.....+.. ...-|.+.+.|++|.+ ...|+|-|.-+....++++..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~------------------~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPEL------------------AVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGD 551 (726)
T ss_pred ccceEEEEecCccccCCCCCccc------------------CCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCC
Confidence 56788999999999975321110 1135788899999996 788999999988877776654
Q ss_pred h
Q 021254 218 L 218 (315)
Q Consensus 218 L 218 (315)
+
T Consensus 552 ~ 552 (726)
T PRK14501 552 L 552 (726)
T ss_pred C
Confidence 4
No 165
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=82.05 E-value=0.74 Score=42.40 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.5
Q ss_pred CCCeEEEEeCCcceeceec
Q 021254 140 GLPITLVLDLDETLVHSSF 158 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~ 158 (315)
.+-+.++|||||||+++..
T Consensus 20 ~~~k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDP 38 (248)
T ss_pred CccCEEEEcCCCccCcCHH
Confidence 3346899999999999864
No 166
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=81.51 E-value=0.79 Score=41.90 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=14.0
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
-+.++|||||||+++.
T Consensus 10 ~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 10 ISALTFDLDDTLYDNR 25 (238)
T ss_pred ceeEEEcCcccccCCh
Confidence 4679999999999985
No 167
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=81.28 E-value=0.82 Score=42.40 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=14.0
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
-++++||+||||+++.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 4689999999999984
No 168
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=81.24 E-value=1.3 Score=45.83 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred eEeeCchHHHHHHHhh-ccc-EEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEE
Q 021254 180 FVRQRPYLHMFLEAVA-SMF-DVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAI 257 (315)
Q Consensus 180 yV~lRP~l~eFL~~l~-~~f-EIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vII 257 (315)
....||++.+.|++|+ +.+ +++|-|+..+.+|..+++.++..+ +|.... ...+ .+-+..++...+++++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~~~-----p~~K---~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAELL-----PEDK---LEIVKELREKYGPVAM 430 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhccC-----cHHH---HHHHHHHHhcCCEEEE
Confidence 3568999999999999 468 999999999999999999998865 443211 1111 2334445566689999
Q ss_pred EECCchhhccCCCCeeeec
Q 021254 258 VDNTPQVFQLQVDNGIPIE 276 (315)
Q Consensus 258 IDDsp~~~~~q~~NgI~I~ 276 (315)
|-|...-...-...++.|.
T Consensus 431 vGDg~nD~~al~~A~vgia 449 (536)
T TIGR01512 431 VGDGINDAPALAAADVGIA 449 (536)
T ss_pred EeCCHHHHHHHHhCCEEEE
Confidence 9999876544444444443
No 169
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=80.81 E-value=2.3 Score=39.41 Aligned_cols=55 Identities=25% Similarity=0.166 Sum_probs=37.7
Q ss_pred CCeEEEEeCCccee-ceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHH-HhhcccEEEEEcCCchhhHHHHHHHh
Q 021254 141 LPITLVLDLDETLV-HSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLE-AVASMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 141 ~k~tLVLDLDeTLV-hs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~-~l~~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+++.||-||||||+ .... -+.-+.++|+ ......-+++-|..+..-+..++...
T Consensus 1 ~~~ll~sDlD~Tl~~~~~~------------------------~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGDDE------------------------ALARLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp -SEEEEEETBTTTBHCHHH------------------------HHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred CCEEEEEECCCCCcCCCHH------------------------HHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 46789999999999 2110 2455666777 44467888888888888888888865
Q ss_pred C
Q 021254 219 D 219 (315)
Q Consensus 219 D 219 (315)
.
T Consensus 57 ~ 57 (247)
T PF05116_consen 57 N 57 (247)
T ss_dssp T
T ss_pred C
Confidence 3
No 170
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=79.37 E-value=0.71 Score=40.74 Aligned_cols=14 Identities=50% Similarity=0.589 Sum_probs=12.4
Q ss_pred EEEeCCcceeceec
Q 021254 145 LVLDLDETLVHSSF 158 (315)
Q Consensus 145 LVLDLDeTLVhs~~ 158 (315)
+||||||||+.+..
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 58999999999964
No 171
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=79.32 E-value=0.78 Score=39.35 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=13.1
Q ss_pred EEEEeCCcceeceec
Q 021254 144 TLVLDLDETLVHSSF 158 (315)
Q Consensus 144 tLVLDLDeTLVhs~~ 158 (315)
.+|||+||||+++..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999974
No 172
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=79.22 E-value=1.1 Score=42.38 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.3
Q ss_pred CCCeEEEEeCCcceecee
Q 021254 140 GLPITLVLDLDETLVHSS 157 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~ 157 (315)
.+-+.+|||+||||+++.
T Consensus 38 ~~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 38 ALPEALLFDCDGVLVETE 55 (286)
T ss_pred cCCcEEEEeCceeEEccc
Confidence 334689999999999997
No 173
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=77.85 E-value=0.85 Score=40.13 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=12.2
Q ss_pred EEEeCCcceeceec
Q 021254 145 LVLDLDETLVHSSF 158 (315)
Q Consensus 145 LVLDLDeTLVhs~~ 158 (315)
+|||+||||++|..
T Consensus 1 viFD~DGTL~Ds~~ 14 (213)
T TIGR01449 1 VLFDLDGTLVDSAP 14 (213)
T ss_pred CeecCCCccccCHH
Confidence 58999999999863
No 174
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=77.64 E-value=3.4 Score=35.41 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=52.7
Q ss_pred eCchHH----HHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCC-CeeeeEEEecc------------eeeeCCccccc
Q 021254 183 QRPYLH----MFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQ-TLIGQRVYRDS------------CVFADGEYLKD 244 (315)
Q Consensus 183 lRP~l~----eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~-~~f~~rl~Re~------------C~~~~g~y~KD 244 (315)
++|++. +||+++. +.++++|-|++...+++++++.++... .++...++-+. |. .+...++.
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~K~~~l~~ 164 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCG-GKAEALKE 164 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEES-HHHHHHHH
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCC-cHHHHHHH
Confidence 356666 9999986 789999999999999999999887653 23444442111 11 02223333
Q ss_pred c---cccCCCCCcEEEEECCchh
Q 021254 245 L---TILGRDLARIAIVDNTPQV 264 (315)
Q Consensus 245 L---~~Lgrdl~~vIIIDDsp~~ 264 (315)
+ ..-+.+..+++.|=|+..-
T Consensus 165 ~~~~~~~~~~~~~~~~iGDs~~D 187 (192)
T PF12710_consen 165 LYIRDEEDIDPDRVIAIGDSIND 187 (192)
T ss_dssp HHHHHHHTHTCCEEEEEESSGGG
T ss_pred HHHHhhcCCCCCeEEEEECCHHH
Confidence 3 1005667788888887653
No 175
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=77.15 E-value=1.4 Score=38.98 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=13.3
Q ss_pred eEEEEeCCcceecee
Q 021254 143 ITLVLDLDETLVHSS 157 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~ 157 (315)
+++||||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 479999999999974
No 176
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=76.99 E-value=1.2 Score=39.28 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.9
Q ss_pred eEEEEeCCcceeceec
Q 021254 143 ITLVLDLDETLVHSSF 158 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~ 158 (315)
+.++||+||||+++..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 4799999999999864
No 177
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=76.99 E-value=1.1 Score=38.18 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=12.1
Q ss_pred EEEeCCcceecee
Q 021254 145 LVLDLDETLVHSS 157 (315)
Q Consensus 145 LVLDLDeTLVhs~ 157 (315)
++||+||||+++.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999986
No 178
>PRK11590 hypothetical protein; Provisional
Probab=76.88 E-value=3.6 Score=36.89 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.1
Q ss_pred CCeEEEEeCCcceecee
Q 021254 141 LPITLVLDLDETLVHSS 157 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~ 157 (315)
+++.++|||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56689999999999543
No 179
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=76.34 E-value=1.3 Score=38.81 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=13.3
Q ss_pred eEEEEeCCcceecee
Q 021254 143 ITLVLDLDETLVHSS 157 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~ 157 (315)
+.++||+||||+++.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 468999999999976
No 180
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=76.06 E-value=1.5 Score=38.04 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.5
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
.+++|||+||||+.+.
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 4579999999999864
No 181
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=76.05 E-value=1.6 Score=39.15 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.7
Q ss_pred CCeEEEEeCCcceecee
Q 021254 141 LPITLVLDLDETLVHSS 157 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~ 157 (315)
..+.++||+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35689999999999985
No 182
>PLN02382 probable sucrose-phosphatase
Probab=75.96 E-value=7.1 Score=39.23 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCCCeEEEEeCCcceece
Q 021254 139 AGLPITLVLDLDETLVHS 156 (315)
Q Consensus 139 ~~~k~tLVLDLDeTLVhs 156 (315)
..+++.||.||||||+.+
T Consensus 6 ~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 6 GSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCCEEEEEcCCCcCcCC
Confidence 356888999999999976
No 183
>PRK09449 dUMP phosphatase; Provisional
Probab=75.35 E-value=1.4 Score=39.32 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.7
Q ss_pred CeEEEEeCCcceece
Q 021254 142 PITLVLDLDETLVHS 156 (315)
Q Consensus 142 k~tLVLDLDeTLVhs 156 (315)
-++++|||||||++.
T Consensus 3 ~k~iiFDlDGTLid~ 17 (224)
T PRK09449 3 YDWILFDADETLFHF 17 (224)
T ss_pred ccEEEEcCCCchhcc
Confidence 357999999999973
No 184
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=74.86 E-value=4 Score=39.03 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=51.7
Q ss_pred CCeEEEEeCCcceeceecCCC----CCCCceeeeeec-CeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHH
Q 021254 141 LPITLVLDLDETLVHSSFDNC----KDADFSFPIHSK-MEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQL 214 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~----~~~d~~~~i~~~-~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~v 214 (315)
++-.+|||+|||++....-.. ....|. ...|. .-....-..-=|++.+|++.+. ..+.|++.|.-....-..=
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~-~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFD-SELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCC-hhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 468999999999996542100 000010 00010 0000001223489999999998 6799999999987666666
Q ss_pred HHHhCCCCCe-eeeEEEec
Q 021254 215 LDILDPNQTL-IGQRVYRD 232 (315)
Q Consensus 215 L~~LDp~~~~-f~~rl~Re 232 (315)
++.|...|-. ..+.+.|.
T Consensus 179 ~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 179 EANLKKAGYHTWEKLILKD 197 (275)
T ss_pred HHHHHHcCCCCcceeeecC
Confidence 6666545511 23445554
No 185
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=74.36 E-value=1.7 Score=38.43 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=13.8
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
-+.++||+||||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 4589999999999875
No 186
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=73.61 E-value=7.7 Score=35.09 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=33.9
Q ss_pred EeeCchHHHHHH-Hhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 181 VRQRPYLHMFLE-AVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 181 V~lRP~l~eFL~-~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+..+|++.+.|+ .+. +...++|-|++...|++++.+..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 357999999995 777 69999999999999999999874
No 187
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=71.51 E-value=1.8 Score=35.78 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=12.2
Q ss_pred EEEeCCcceeceec
Q 021254 145 LVLDLDETLVHSSF 158 (315)
Q Consensus 145 LVLDLDeTLVhs~~ 158 (315)
++||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999764
No 188
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=69.44 E-value=12 Score=32.94 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=40.7
Q ss_pred EEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHh
Q 021254 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDIL 218 (315)
Q Consensus 145 LVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~L 218 (315)
+|.|+||||--|-... ..+.+ -+. . +.+||+-++...++ ..|.++=-|+-.-..|...-+.|
T Consensus 2 VvsDIDGTiT~SD~~G-----~i~~~--~G~--d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLG-----HILPI--LGK--D---WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred EEEeccCCcCccchhh-----hhhhc--cCc--h---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 6889999999883210 00000 011 1 46999999999999 56988888887765555444443
No 189
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=68.73 E-value=6.3 Score=35.88 Aligned_cols=51 Identities=25% Similarity=0.164 Sum_probs=30.7
Q ss_pred EEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccE--EEEEcCCchhhHHHH
Q 021254 146 VLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFD--VVIFTAGQSIYAGQL 214 (315)
Q Consensus 146 VLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fE--IvIfTas~~~YA~~v 214 (315)
.||.||||.-....+. -...-|++.+.|+.|+.... |+|-|.......+..
T Consensus 1 ~lDyDGTL~p~~~~p~------------------~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPD------------------AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-GG------------------G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CcccCCccCCCCCCcc------------------ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 4899999998764322 13457999999999997766 888888877764333
No 190
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=68.61 E-value=14 Score=34.63 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=39.6
Q ss_pred CeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCC
Q 021254 142 PITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDP 220 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp 220 (315)
.+.+.+|||+||+..+.++.. +...+.++. ..|+|+.-|+-+.---..+=+.|+.
T Consensus 7 ~~lIFtDlD~TLl~~~ye~~p------------------------A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEWQP------------------------AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred ceEEEEcccCcccCCCCCCCc------------------------cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 345667999999995544322 123455566 6899999998777666667777877
Q ss_pred CCC
Q 021254 221 NQT 223 (315)
Q Consensus 221 ~~~ 223 (315)
.+.
T Consensus 63 ~~~ 65 (274)
T COG3769 63 QGL 65 (274)
T ss_pred CCC
Confidence 753
No 191
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=65.96 E-value=12 Score=41.37 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=41.4
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh--cccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA--SMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~--~~fEIvIfTas~~~YA~~vL~~ 217 (315)
.++..++||+||||+..... -+..-|++.+.|++|. +...++|-|.-...-.+.++..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred hcCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 56788999999999955310 0112467888888874 4677888888877777777654
Q ss_pred h
Q 021254 218 L 218 (315)
Q Consensus 218 L 218 (315)
+
T Consensus 654 ~ 654 (854)
T PLN02205 654 C 654 (854)
T ss_pred C
Confidence 4
No 192
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=65.35 E-value=13 Score=40.47 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc--ccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS--MFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~--~fEIvIfTas~~~YA~~vL~~ 217 (315)
.++..|+||.||||+.....+.. ..-+..-|++.+-|+.|++ .-.|+|-|.-...-.++++..
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~~---------------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQIK---------------EMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred ccCeEEEEecCccccCCCCCccc---------------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 56788999999999954321100 0113346899999999984 578999998888888877764
Q ss_pred h
Q 021254 218 L 218 (315)
Q Consensus 218 L 218 (315)
+
T Consensus 570 ~ 570 (797)
T PLN03063 570 Y 570 (797)
T ss_pred C
Confidence 3
No 193
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=62.48 E-value=4.1 Score=36.54 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.9
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
++++++|+||||+.+.
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 5689999999999875
No 194
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=62.28 E-value=16 Score=40.64 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=49.2
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhc--ccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVAS--MFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~--~fEIvIfTas~~~YA~~vL~~ 217 (315)
.++..|+||.||||+.....|...... ....-+..-|.+.+.|+.|.. ...|+|-|.-...-.+.++..
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~~~---------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~ 659 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRGDQ---------IKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGE 659 (934)
T ss_pred ccceEEEEecCceeccCCCCccccccc---------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCC
Confidence 567889999999999765433211111 001123345889999999994 588999999999988888866
Q ss_pred h
Q 021254 218 L 218 (315)
Q Consensus 218 L 218 (315)
+
T Consensus 660 ~ 660 (934)
T PLN03064 660 F 660 (934)
T ss_pred C
Confidence 5
No 195
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=60.52 E-value=9.7 Score=35.89 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=57.0
Q ss_pred eeEeeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhC---CCCCeeeeEEEecceeee---CC----cccccccc
Q 021254 179 VFVRQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILD---PNQTLIGQRVYRDSCVFA---DG----EYLKDLTI 247 (315)
Q Consensus 179 ~yV~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LD---p~~~~f~~rl~Re~C~~~---~g----~y~KDL~~ 247 (315)
.-+.+|.|+.+|++.|.+ .-.+.|||||-..-.+.+|++-. +.-++++..+.-+..... +| .|.|+-..
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 347899999999999995 58999999999999999999963 222244444433221111 11 24455443
Q ss_pred c--------CCCCCcEEEEECCchhhcc-----CCCCeeeeccc
Q 021254 248 L--------GRDLARIAIVDNTPQVFQL-----QVDNGIPIESW 278 (315)
Q Consensus 248 L--------grdl~~vIIIDDsp~~~~~-----q~~NgI~I~~f 278 (315)
+ -..-.|||++-|+..-..+ ..+|.|.|.=.
T Consensus 167 l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFL 210 (246)
T PF05822_consen 167 LEDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFL 210 (246)
T ss_dssp HTTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE
T ss_pred ccCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEec
Confidence 3 1344789999999986532 33555555433
No 196
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=58.73 E-value=5.3 Score=35.16 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=12.5
Q ss_pred EEEEeCCcceecee
Q 021254 144 TLVLDLDETLVHSS 157 (315)
Q Consensus 144 tLVLDLDeTLVhs~ 157 (315)
++||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999974
No 197
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=57.66 E-value=6.2 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCeEEEEeCCcceeceec
Q 021254 141 LPITLVLDLDETLVHSSF 158 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~ 158 (315)
..++++||+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 356889999999999753
No 198
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=57.55 E-value=5.7 Score=35.94 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.2
Q ss_pred CCeEEEEeCCcceecee
Q 021254 141 LPITLVLDLDETLVHSS 157 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~ 157 (315)
-++..+||+||||++.-
T Consensus 4 ~~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQD 20 (210)
T ss_pred cCcEEEEcCCCCCccCc
Confidence 35678999999999974
No 199
>PRK10671 copA copper exporting ATPase; Provisional
Probab=52.00 E-value=14 Score=40.25 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=60.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEE
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVD 259 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIID 259 (315)
-..||++.+.|+++. ..+.+++.|...+..|+.+++.++... +|.... ...+. +-++.++...+++++|-
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~~~-----p~~K~---~~i~~l~~~~~~v~~vG 719 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAGVL-----PDGKA---EAIKRLQSQGRQVAMVG 719 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeCCC-----HHHHH---HHHHHHhhcCCEEEEEe
Confidence 357999999999998 579999999999999999999998764 343211 01122 23333455567899999
Q ss_pred CCchhhccCCCCeeee
Q 021254 260 NTPQVFQLQVDNGIPI 275 (315)
Q Consensus 260 Dsp~~~~~q~~NgI~I 275 (315)
|...-...-...++-|
T Consensus 720 Dg~nD~~al~~Agvgi 735 (834)
T PRK10671 720 DGINDAPALAQADVGI 735 (834)
T ss_pred CCHHHHHHHHhCCeeE
Confidence 9988654444444444
No 200
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=50.26 E-value=8.1 Score=34.83 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.4
Q ss_pred EEEEeCCcceeceec
Q 021254 144 TLVLDLDETLVHSSF 158 (315)
Q Consensus 144 tLVLDLDeTLVhs~~ 158 (315)
..+|||||||+...|
T Consensus 3 la~FDlD~TLi~~~w 17 (203)
T TIGR02137 3 IACLDLEGVLVPEIW 17 (203)
T ss_pred EEEEeCCcccHHHHH
Confidence 479999999997654
No 201
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=48.95 E-value=47 Score=28.99 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=35.2
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECC
Q 021254 183 QRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNT 261 (315)
Q Consensus 183 lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDs 261 (315)
.|-.+.+||+.+. +.-.|++|-|+.+.. .+|..++...+++. .++|++
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~--tlln~~g~~~~~I~-----------------------------~vvD~n 101 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGN--TLLNYFGLDNDLID-----------------------------YVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHH--HHHHHHT--TTTS-------------------------------EEES-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHH--HHHHHhCCCcceeE-----------------------------EEEeCC
Confidence 4566778888887 567799999988765 45777766553332 366666
Q ss_pred chhh-ccCCCCeeeecccc
Q 021254 262 PQVF-QLQVDNGIPIESWF 279 (315)
Q Consensus 262 p~~~-~~q~~NgI~I~~f~ 279 (315)
|.+. .+-|..+|||.+-.
T Consensus 102 p~K~G~~~PGt~ipI~~p~ 120 (160)
T PF08484_consen 102 PLKQGKYLPGTHIPIVSPE 120 (160)
T ss_dssp GGGTTEE-TTT--EEEEGG
T ss_pred hhhcCcccCCCCCeECCHH
Confidence 6665 33466667666553
No 202
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=47.01 E-value=98 Score=26.71 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCC-chhhHHHHHHHh
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAG-QSIYAGQLLDIL 218 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas-~~~YA~~vL~~L 218 (315)
++..++||||-||+-+-..-.-++.|. ++.......+.-...=|...--|..|+ +..++++.+.+ .+.+|.+.|+.+
T Consensus 4 ~p~~~~fdldytiwP~~vdthl~~pfk-P~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~f 82 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHLDYPFK-PFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETF 82 (144)
T ss_pred CCceeEEeccceeeeEEEEeccccccc-ccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh
Confidence 455788888888876643211111110 111111223333455678888899999 67999998887 579999999998
Q ss_pred CCCCCeeeeEEEecceee---eCC---ccccccccc-CCCCCcEEEEECCch
Q 021254 219 DPNQTLIGQRVYRDSCVF---ADG---EYLKDLTIL-GRDLARIAIVDNTPQ 263 (315)
Q Consensus 219 Dp~~~~f~~rl~Re~C~~---~~g---~y~KDL~~L-grdl~~vIIIDDsp~ 263 (315)
-.... +.-+-..+...+ .+| .+.|++..- |...++..+.||...
T Consensus 83 kvk~~-Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 83 KVKQT-GVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNSIEKNKQVFDDESR 133 (144)
T ss_pred ccCcc-cccchhhhcCceeeecCcccchhHHHHhhccCcchhceeeeccccc
Confidence 64421 111111111111 122 133666433 666677888888653
No 203
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=46.59 E-value=9.9 Score=32.48 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=11.6
Q ss_pred EEEeCCcceecee
Q 021254 145 LVLDLDETLVHSS 157 (315)
Q Consensus 145 LVLDLDeTLVhs~ 157 (315)
+|||+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999985
No 204
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=46.46 E-value=9.3 Score=32.33 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.3
Q ss_pred EEEeCCcceecee
Q 021254 145 LVLDLDETLVHSS 157 (315)
Q Consensus 145 LVLDLDeTLVhs~ 157 (315)
+|||+||||+...
T Consensus 2 ~~fD~DgTl~~~~ 14 (177)
T TIGR01488 2 AIFDFDGTLTRQD 14 (177)
T ss_pred EEecCccccccch
Confidence 6899999999864
No 205
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=43.92 E-value=11 Score=32.86 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=11.4
Q ss_pred EEEeCCcceecee
Q 021254 145 LVLDLDETLVHSS 157 (315)
Q Consensus 145 LVLDLDeTLVhs~ 157 (315)
.+||+||||+...
T Consensus 2 a~FD~DgTL~~~~ 14 (202)
T TIGR01490 2 AFFDFDGTLTAKD 14 (202)
T ss_pred eEEccCCCCCCCc
Confidence 6899999999964
No 206
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=43.29 E-value=20 Score=32.74 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=62.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHH----HHhCCCCCeeeeEEEecceee-eCCcccccccccCCCCCc
Q 021254 181 VRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLL----DILDPNQTLIGQRVYRDSCVF-ADGEYLKDLTILGRDLAR 254 (315)
Q Consensus 181 V~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL----~~LDp~~~~f~~rl~Re~C~~-~~g~y~KDL~~Lgrdl~~ 254 (315)
-.+=|.+-+++++-. ....++|||+++-. |++++ +..|..+ ||+..+-...-.. ..+.|.|.+..+|.+++.
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~-AQkL~Fghs~agdL~~-lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~e 179 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVK-AQKLFFGHSDAGDLNS-LFSGYFDTTIGKKRESQSYAKIAGDIGLPPAE 179 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCch-hHHHhhcccccccHHh-hhcceeeccccccccchhHHHHHHhcCCCchh
Confidence 345699999999888 67999999998743 44433 2334443 6665554322111 134689999999999999
Q ss_pred EEEEECCchhhccCCCCeee
Q 021254 255 IAIVDNTPQVFQLQVDNGIP 274 (315)
Q Consensus 255 vIIIDDsp~~~~~q~~NgI~ 274 (315)
++++-|.|.......+-|+.
T Consensus 180 ilFLSDn~~EL~AA~~vGl~ 199 (229)
T COG4229 180 ILFLSDNPEELKAAAGVGLA 199 (229)
T ss_pred eEEecCCHHHHHHHHhcchh
Confidence 99999999866444444443
No 207
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=43.23 E-value=50 Score=26.02 Aligned_cols=16 Identities=50% Similarity=0.547 Sum_probs=14.0
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
..+|||+=|||.|.+.
T Consensus 39 ~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 39 VLTLVLEEDGTAVDSE 54 (81)
T ss_pred ceEEEEecCCCEEccH
Confidence 4799999999999873
No 208
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.07 E-value=52 Score=25.74 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=14.0
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
..+|||+=|||.|.+.
T Consensus 40 ~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 40 LVTLVLEEDGTVVDTE 55 (78)
T ss_pred CcEEEEeCCCCEEccH
Confidence 5789999999999873
No 209
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=38.21 E-value=61 Score=25.06 Aligned_cols=16 Identities=50% Similarity=0.796 Sum_probs=14.1
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
..+|||+=|||.|...
T Consensus 38 ~~~l~L~eDGT~VddE 53 (74)
T smart00266 38 PVTLVLEEDGTIVDDE 53 (74)
T ss_pred CcEEEEecCCcEEccH
Confidence 6789999999999873
No 210
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=37.83 E-value=48 Score=32.62 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=57.7
Q ss_pred eeEeeCc-hHHHHHHHhhc------ccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEEecce---------ee-eCCcc
Q 021254 179 VFVRQRP-YLHMFLEAVAS------MFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVYRDSC---------VF-ADGEY 241 (315)
Q Consensus 179 ~yV~lRP-~l~eFL~~l~~------~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~Re~C---------~~-~~g~y 241 (315)
+.++.|| ++..-|+.|.+ .++|+|+--+...-+..++....-.=+++.+.-....- .. ...+|
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hy 85 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIARHY 85 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHHHH
Confidence 4577899 79999999984 48999998887765556555542110133332211110 00 00123
Q ss_pred ccccccc--CCCCCcEEEEECCchhh------------c-cCCCCeeeeccccC
Q 021254 242 LKDLTIL--GRDLARIAIVDNTPQVF------------Q-LQVDNGIPIESWFG 280 (315)
Q Consensus 242 ~KDL~~L--grdl~~vIIIDDsp~~~------------~-~q~~NgI~I~~f~~ 280 (315)
..-|+.+ ....+.+||+||....- . .+-.....|.+|.+
T Consensus 86 k~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd 139 (334)
T cd02514 86 KWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND 139 (334)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence 3344433 23468899999976532 1 22346777788853
No 211
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=37.30 E-value=51 Score=30.60 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=31.7
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhhcccEEEEEcCC
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAG 206 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~~~fEIvIfTas 206 (315)
.++..+.+|.||||.-+... .-|-+.+||+.+.+...|.+--.+
T Consensus 9 ~~~~l~lfdvdgtLt~~r~~-----------------------~~~e~~~~l~~lr~~v~ig~Vggs 52 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTPPRQK-----------------------VTPEMLEFLQKLRKKVTIGFVGGS 52 (252)
T ss_pred CCceEEEEecCCcccccccc-----------------------CCHHHHHHHHHHhhheEEEEeecH
Confidence 44456667999999877532 468889999999887776654433
No 212
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=36.84 E-value=67 Score=25.07 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=14.5
Q ss_pred CCeEEEEeCCcceecee
Q 021254 141 LPITLVLDLDETLVHSS 157 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~ 157 (315)
...+|||+-|||.|...
T Consensus 39 ~~~~lvL~eDGTeVddE 55 (78)
T cd01615 39 APVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCeEEEEeCCCcEEccH
Confidence 46789999999999763
No 213
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=36.76 E-value=67 Score=25.21 Aligned_cols=17 Identities=53% Similarity=0.685 Sum_probs=14.5
Q ss_pred CCeEEEEeCCcceecee
Q 021254 141 LPITLVLDLDETLVHSS 157 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~ 157 (315)
...+|||+=|||.|...
T Consensus 41 ~~~~lvL~eDGT~VddE 57 (80)
T cd06536 41 APITLVLAEDGTIVEDE 57 (80)
T ss_pred CceEEEEecCCcEEccH
Confidence 45799999999999873
No 214
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=36.20 E-value=27 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.2
Q ss_pred EEEEEcCCchhhHHHHHHH-hCCC
Q 021254 199 DVVIFTAGQSIYAGQLLDI-LDPN 221 (315)
Q Consensus 199 EIvIfTas~~~YA~~vL~~-LDp~ 221 (315)
+.+|-||+.+.|++++++. ++-+
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCCCC
Confidence 4599999999999999975 6554
No 215
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=34.82 E-value=67 Score=25.17 Aligned_cols=16 Identities=44% Similarity=0.374 Sum_probs=13.8
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
..+|||+=|||.|...
T Consensus 39 ~~~lvL~eDGT~Vd~E 54 (79)
T cd06538 39 ISSLVLDEDGTGVDTE 54 (79)
T ss_pred ccEEEEecCCcEEccH
Confidence 3789999999999863
No 216
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.44 E-value=22 Score=30.73 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.2
Q ss_pred eEEEEeCCcceeceec
Q 021254 143 ITLVLDLDETLVHSSF 158 (315)
Q Consensus 143 ~tLVLDLDeTLVhs~~ 158 (315)
.+++||.||||.....
T Consensus 2 ~~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKM 17 (215)
T ss_dssp SEEEEECCTTTBESHH
T ss_pred eEEEEecCCCcccCeE
Confidence 3789999999988754
No 217
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=33.19 E-value=45 Score=29.67 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=71.0
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeee-eeEeeCchHHHHHHHh-hcccEEEEEcCCchhhHHHHHHH
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQT-VFVRQRPYLHMFLEAV-ASMFDVVIFTAGQSIYAGQLLDI 217 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~-~yV~lRP~l~eFL~~l-~~~fEIvIfTas~~~YA~~vL~~ 217 (315)
++-+.|++|.||||.+...--.+ ++.... |.| |-|.- ++.+ .-..++.|-|.-....++.=++.
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~----------~Gee~KaFnv--~DG~G--ik~l~~~Gi~vAIITGr~s~ive~Ra~~ 71 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDE----------NGEEIKAFNV--RDGHG--IKLLLKSGIKVAIITGRDSPIVEKRAKD 71 (170)
T ss_pred hhceEEEEeccceeecCeEEEcC----------CCceeeeeec--cCcHH--HHHHHHcCCeEEEEeCCCCHHHHHHHHH
Confidence 45678999999999987642111 122211 222 33322 2222 24689999999999999999999
Q ss_pred hCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCCeeeecc
Q 021254 218 LDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQVFQLQVDNGIPIES 277 (315)
Q Consensus 218 LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q~~NgI~I~~ 277 (315)
|..+. ++..+.-... .|..-+..++.+++.|..|-|.---|..-..-|+++.+
T Consensus 72 LGI~~-~~qG~~dK~~------a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~ 124 (170)
T COG1778 72 LGIKH-LYQGISDKLA------AFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAV 124 (170)
T ss_pred cCCce-eeechHhHHH------HHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCcccc
Confidence 97764 3322211111 23444556788999998887776655444445555443
No 218
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=32.98 E-value=62 Score=27.81 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=40.5
Q ss_pred eCchHHHHHHHhhc-ccEEEEEcCCchh-hHHHHHHHhCCCCCeeeeEEEecceeeeCCcccccccccCCCCCcEEEEEC
Q 021254 183 QRPYLHMFLEAVAS-MFDVVIFTAGQSI-YAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDN 260 (315)
Q Consensus 183 lRP~l~eFL~~l~~-~fEIvIfTas~~~-YA~~vL~~LDp~~~~f~~rl~Re~C~~~~g~y~KDL~~Lgrdl~~vIIIDD 260 (315)
.++.+.++++.+++ .+.+.|+|..... --+.+++.+|- ...|.|++++..+++.-+|=+|+|-
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~---------------l~~g~y~~~~~~~~~~~sNQ~~~~~ 137 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDY---------------LKTGRWIHTRGGLGSPTTNQIFIDL 137 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCE---------------EEEChHHHHcCCCCCCCcCceEEEC
Confidence 67899999999995 6999999986542 22344444432 1245666666555544456677764
No 219
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.26 E-value=48 Score=25.87 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.4
Q ss_pred CCeEEEEeCCcceecee
Q 021254 141 LPITLVLDLDETLVHSS 157 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~ 157 (315)
...+|||+-|||.|...
T Consensus 39 ~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp STCEEEETTTTCBESSC
T ss_pred cCcEEEEeCCCcEEccH
Confidence 45689999999999963
No 220
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=31.46 E-value=6.7 Score=35.86 Aligned_cols=89 Identities=8% Similarity=-0.062 Sum_probs=56.3
Q ss_pred CchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeE--EEecceeeeCC---cccccccccCC-CCCcEE
Q 021254 184 RPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQR--VYRDSCVFADG---EYLKDLTILGR-DLARIA 256 (315)
Q Consensus 184 RP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~r--l~Re~C~~~~g---~y~KDL~~Lgr-dl~~vI 256 (315)
-|++.+.|+.+. +...+ |-|+....|+...+..++... +|... ...+.....+. .|.+-+..+|. +.++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~-~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGY-YAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccH-HHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 489999999876 45666 669999999987777666542 44321 22333222232 25566667774 467899
Q ss_pred EEECCc-hhhccCCCCeee
Q 021254 257 IVDNTP-QVFQLQVDNGIP 274 (315)
Q Consensus 257 IIDDsp-~~~~~q~~NgI~ 274 (315)
+|.|+. .-......+|+.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGID 236 (242)
T ss_pred EECCCcHHHHHHHHHCCCe
Confidence 999995 444444455553
No 221
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=30.20 E-value=29 Score=30.42 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=12.2
Q ss_pred CeEEEEeCCcceecee
Q 021254 142 PITLVLDLDETLVHSS 157 (315)
Q Consensus 142 k~tLVLDLDeTLVhs~ 157 (315)
|+.+.+|+||||.+..
T Consensus 2 ~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFN 17 (191)
T ss_dssp -EEEEEESBTTTB-HH
T ss_pred CcEEEEECCCCCcccH
Confidence 5569999999999865
No 222
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=30.11 E-value=77 Score=32.07 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCc
Q 021254 140 GLPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQ 207 (315)
Q Consensus 140 ~~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~ 207 (315)
...+..-||+|||||...... .|+ ....++.+..++.-.. |+.+. +.|-++|||...
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~------vf~----~~~~dw~~l~~~vp~K-lktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGK------VFP----KGSMDWRILFPEVPSK-LKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCcc------eee----ccCccceeeccccchh-hhhhccCCeEEEEEeccc
Confidence 455678899999999985421 111 1122333434444444 55555 789999999765
No 223
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=29.02 E-value=37 Score=35.24 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.7
Q ss_pred EEEEEcCCchhhHHHHHHH-hCCC
Q 021254 199 DVVIFTAGQSIYAGQLLDI-LDPN 221 (315)
Q Consensus 199 EIvIfTas~~~YA~~vL~~-LDp~ 221 (315)
+++|-||+.+.++++-++. ++-+
T Consensus 110 ~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999998 6655
No 224
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.03 E-value=1.3e+02 Score=27.92 Aligned_cols=83 Identities=12% Similarity=0.210 Sum_probs=56.1
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCC-eeeeEE-Eecceeee---------C-C---cccccc
Q 021254 182 RQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQT-LIGQRV-YRDSCVFA---------D-G---EYLKDL 245 (315)
Q Consensus 182 ~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~-~f~~rl-~Re~C~~~---------~-g---~y~KDL 245 (315)
.+-||++++..+|. +...+++-|.+-...+.+|-+.|+.... .+..++ |-.+-.+. + | .-++-|
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~l 167 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALL 167 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHH
Confidence 45699999999999 6799999999999999999999986631 333332 22221111 0 1 122333
Q ss_pred cccCCCCCcEEEEECCchhh
Q 021254 246 TILGRDLARIAIVDNTPQVF 265 (315)
Q Consensus 246 ~~Lgrdl~~vIIIDDsp~~~ 265 (315)
.. |++-+.+++|-|-..-.
T Consensus 168 rk-~~~~~~~~mvGDGatDl 186 (227)
T KOG1615|consen 168 RK-NYNYKTIVMVGDGATDL 186 (227)
T ss_pred Hh-CCChheeEEecCCcccc
Confidence 33 78888888888866543
No 225
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=23.28 E-value=73 Score=34.32 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=37.8
Q ss_pred eeCchHHHHHHHhhc-ccEEEEEcCCchhhHHHHHHHhCCCC
Q 021254 182 RQRPYLHMFLEAVAS-MFDVVIFTAGQSIYAGQLLDILDPNQ 222 (315)
Q Consensus 182 ~lRP~l~eFL~~l~~-~fEIvIfTas~~~YA~~vL~~LDp~~ 222 (315)
..||++.+.+++|++ ..++++-|--.+..|..|.+.++...
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~ 482 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDR 482 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCce
Confidence 579999999999995 79999999999999999999998764
No 226
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=22.99 E-value=13 Score=34.45 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=56.2
Q ss_pred chHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhCCCCCeeeeEEE---ecceeeeCC---cccccccccCCCCCcEEE
Q 021254 185 PYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRVY---RDSCVFADG---EYLKDLTILGRDLARIAI 257 (315)
Q Consensus 185 P~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LDp~~~~f~~rl~---Re~C~~~~g---~y~KDL~~Lgrdl~~vII 257 (315)
|++.+-++.|. ..+.++|-|+....++...+..++... +|....+ ++.....+. .|.+-+..+|.+++++++
T Consensus 123 ~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~-~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~ 201 (257)
T TIGR01458 123 QILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGP-FVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVM 201 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchH-HHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEE
Confidence 67777788887 467889998888777765555444432 3332211 111111222 356667788999999999
Q ss_pred EECCc-hhhccCCCCeeeec
Q 021254 258 VDNTP-QVFQLQVDNGIPIE 276 (315)
Q Consensus 258 IDDsp-~~~~~q~~NgI~I~ 276 (315)
|.|+. .-......+|+..-
T Consensus 202 vGD~~~~Di~~a~~~G~~~i 221 (257)
T TIGR01458 202 IGDDCRDDVGGAQDCGMRGI 221 (257)
T ss_pred ECCCcHHHHHHHHHcCCeEE
Confidence 99986 44544455555543
No 227
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=22.73 E-value=1.4e+02 Score=30.49 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=39.5
Q ss_pred eeeEeeCchHHHHHHHhhcc-cEEEEEcCCchhhHHHHHHHh-CC-------CCCeeeeEEE
Q 021254 178 TVFVRQRPYLHMFLEAVASM-FDVVIFTAGQSIYAGQLLDIL-DP-------NQTLIGQRVY 230 (315)
Q Consensus 178 ~~yV~lRP~l~eFL~~l~~~-fEIvIfTas~~~YA~~vL~~L-Dp-------~~~~f~~rl~ 230 (315)
.-||.+-|.+..+|++|++. -.+.+-|+|.-.|++.+++.+ ++ -+.||+-++.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 35788899999999999965 589999999999999999996 34 2457776665
No 228
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=21.66 E-value=1.4e+02 Score=27.99 Aligned_cols=55 Identities=20% Similarity=0.097 Sum_probs=43.8
Q ss_pred CCeEEEEeCCcceeceecCCCCCCCceeeeeecCeeeeeeEeeCchHHHHHHHhh-cccEEEEEcCCchhhHHHHHHHhC
Q 021254 141 LPITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVA-SMFDVVIFTAGQSIYAGQLLDILD 219 (315)
Q Consensus 141 ~k~tLVLDLDeTLVhs~~~~~~~~d~~~~i~~~~~~~~~yV~lRP~l~eFL~~l~-~~fEIvIfTas~~~YA~~vL~~LD 219 (315)
.-+.+.+||-|||-.+-. -=||..|-|++|. ++-.|-..|..++.--..+.+.|.
T Consensus 6 ~v~gvLlDlSGtLh~e~~------------------------avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~ 61 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDA------------------------AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQ 61 (262)
T ss_pred ccceEEEeccceEecccc------------------------cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHH
Confidence 345688999999977632 3699999999999 899999999998877777777663
No 229
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=20.01 E-value=1.9e+02 Score=22.57 Aligned_cols=13 Identities=38% Similarity=0.151 Sum_probs=11.7
Q ss_pred CeEEEEeCCccee
Q 021254 142 PITLVLDLDETLV 154 (315)
Q Consensus 142 k~tLVLDLDeTLV 154 (315)
..+|||+=|||.|
T Consensus 40 ~~~l~L~eDGTeV 52 (77)
T cd06535 40 GSRLCLYEDGTEV 52 (77)
T ss_pred CcEEEEecCCcEe
Confidence 4689999999999
Done!