Query 021258
Match_columns 315
No_of_seqs 119 out of 1366
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1581 UDP-galactose transpor 100.0 3.9E-42 8.4E-47 299.0 25.0 283 1-285 37-319 (327)
2 PF08449 UAA: UAA transporter 100.0 8E-37 1.7E-41 279.1 30.4 272 13-285 30-303 (303)
3 KOG1580 UDP-galactose transpor 100.0 1.8E-36 3.8E-41 254.3 19.6 277 1-282 36-316 (337)
4 TIGR00817 tpt Tpt phosphate/ph 100.0 1.3E-31 2.7E-36 244.8 25.3 270 3-285 21-299 (302)
5 PTZ00343 triose or hexose phos 100.0 7.4E-29 1.6E-33 230.5 27.2 265 3-280 68-349 (350)
6 PF06027 DUF914: Eukaryotic pr 100.0 9E-28 1.9E-32 218.9 26.2 270 9-285 37-311 (334)
7 PLN00411 nodulin MtN21 family 100.0 5.5E-27 1.2E-31 217.6 29.8 268 15-285 42-334 (358)
8 KOG1582 UDP-galactose transpor 100.0 9E-28 2E-32 205.7 16.3 271 8-286 67-339 (367)
9 KOG1441 Glucose-6-phosphate/ph 100.0 1.1E-28 2.4E-33 222.1 11.0 274 2-287 35-315 (316)
10 PRK11272 putative DMT superfam 99.9 3.5E-24 7.6E-29 194.8 28.6 253 13-283 34-289 (292)
11 PRK11453 O-acetylserine/cystei 99.9 1.5E-23 3.2E-28 191.3 31.1 255 14-282 31-290 (299)
12 PRK11689 aromatic amino acid e 99.9 5.3E-24 1.2E-28 193.9 26.5 255 14-282 31-290 (295)
13 TIGR00950 2A78 Carboxylate/Ami 99.9 9.9E-24 2.1E-28 188.3 27.5 243 12-274 15-259 (260)
14 KOG1444 Nucleotide-sugar trans 99.9 3.6E-24 7.9E-29 189.1 19.9 272 2-285 30-306 (314)
15 PRK15430 putative chlorampheni 99.9 3.4E-23 7.3E-28 188.7 25.5 244 15-279 35-285 (296)
16 PRK10532 threonine and homoser 99.9 7.7E-23 1.7E-27 186.1 27.5 246 14-283 39-285 (293)
17 KOG1583 UDP-N-acetylglucosamin 99.9 5.8E-25 1.3E-29 189.1 8.6 259 15-278 33-313 (330)
18 KOG1443 Predicted integral mem 99.9 2.2E-23 4.8E-28 181.9 17.8 257 9-278 39-314 (349)
19 COG5070 VRG4 Nucleotide-sugar 99.9 1.2E-21 2.7E-26 163.8 13.6 277 2-285 24-302 (309)
20 TIGR03340 phn_DUF6 phosphonate 99.8 1.4E-19 3.1E-24 163.7 20.9 240 19-276 31-280 (281)
21 KOG2234 Predicted UDP-galactos 99.8 1.5E-18 3.2E-23 155.8 26.8 275 4-283 35-326 (345)
22 COG0697 RhaT Permeases of the 99.8 5.2E-18 1.1E-22 152.9 28.4 248 15-280 36-288 (292)
23 KOG4510 Permease of the drug/m 99.8 5.1E-22 1.1E-26 170.3 1.6 265 15-286 64-332 (346)
24 KOG1442 GDP-fucose transporter 99.8 1.1E-21 2.5E-26 168.6 2.9 277 3-287 47-335 (347)
25 TIGR00688 rarD rarD protein. T 99.8 5.8E-18 1.3E-22 151.0 24.5 218 14-254 28-255 (256)
26 PF04142 Nuc_sug_transp: Nucle 99.8 4E-18 8.7E-23 150.4 20.6 223 44-270 14-244 (244)
27 KOG3912 Predicted integral mem 99.8 3.8E-17 8.2E-22 141.3 19.9 266 10-278 34-333 (372)
28 TIGR00776 RhaT RhaT L-rhamnose 99.7 2.7E-15 5.8E-20 136.2 24.0 239 22-280 33-289 (290)
29 KOG2765 Predicted membrane pro 99.7 7.7E-17 1.7E-21 144.7 12.0 230 51-284 163-395 (416)
30 KOG2766 Predicted membrane pro 99.7 1.1E-17 2.4E-22 142.8 0.0 252 12-278 45-298 (336)
31 COG2962 RarD Predicted permeas 99.7 1.5E-13 3.4E-18 120.5 25.8 249 15-285 34-289 (293)
32 PF03151 TPT: Triose-phosphate 99.6 1.1E-14 2.5E-19 119.4 16.2 141 139-279 1-153 (153)
33 COG5006 rhtA Threonine/homoser 99.6 2.4E-13 5.2E-18 116.5 23.3 245 15-282 40-285 (292)
34 TIGR00803 nst UDP-galactose tr 99.6 9.1E-15 2E-19 127.7 13.5 203 71-276 2-221 (222)
35 COG2510 Predicted membrane pro 99.2 1E-10 2.2E-15 90.3 8.4 134 140-278 5-138 (140)
36 PF00892 EamA: EamA-like trans 99.2 3E-10 6.6E-15 89.2 11.3 124 148-278 1-125 (126)
37 PF13536 EmrE: Multidrug resis 99.0 2E-09 4.3E-14 83.9 10.4 101 20-121 2-108 (113)
38 PF06800 Sugar_transport: Suga 99.0 2.7E-07 5.9E-12 81.8 22.3 236 24-275 21-267 (269)
39 PRK15430 putative chlorampheni 98.9 8.7E-08 1.9E-12 87.3 18.0 140 134-277 4-143 (296)
40 TIGR00688 rarD rarD protein. T 98.9 7.4E-08 1.6E-12 85.9 17.2 137 138-277 2-140 (256)
41 PF00892 EamA: EamA-like trans 98.9 1.6E-08 3.4E-13 79.3 9.7 104 14-118 18-125 (126)
42 KOG4314 Predicted carbohydrate 98.8 8.3E-09 1.8E-13 85.7 7.2 219 51-282 57-279 (290)
43 TIGR03340 phn_DUF6 phosphonate 98.7 3.6E-07 7.7E-12 82.7 14.4 133 140-279 3-135 (281)
44 COG2510 Predicted membrane pro 98.6 1.3E-07 2.8E-12 73.3 7.1 106 13-118 29-138 (140)
45 PF05653 Mg_trans_NIPA: Magnes 98.6 1.1E-07 2.5E-12 86.5 8.0 222 52-282 54-295 (300)
46 PLN00411 nodulin MtN21 family 98.5 3.9E-06 8.4E-11 78.4 15.7 140 138-281 13-158 (358)
47 PF13536 EmrE: Multidrug resis 98.4 9.3E-06 2E-10 63.1 13.6 103 177-282 6-109 (113)
48 COG2962 RarD Predicted permeas 98.4 1.3E-05 2.8E-10 71.0 15.1 140 136-280 5-145 (293)
49 PRK02971 4-amino-4-deoxy-L-ara 98.3 2.7E-05 5.8E-10 61.9 14.3 68 215-282 56-125 (129)
50 TIGR00950 2A78 Carboxylate/Ami 98.3 1.9E-05 4.2E-10 70.2 13.7 116 151-278 2-118 (260)
51 PRK11272 putative DMT superfam 98.2 7E-05 1.5E-09 68.1 16.4 127 142-278 12-140 (292)
52 PRK15051 4-amino-4-deoxy-L-ara 98.1 4.6E-05 9.9E-10 59.0 11.4 63 56-118 46-108 (111)
53 TIGR00817 tpt Tpt phosphate/ph 98.1 0.00013 2.7E-09 66.7 15.5 119 153-277 17-135 (302)
54 PRK11453 O-acetylserine/cystei 98.1 0.00014 3E-09 66.4 15.2 123 141-278 7-131 (299)
55 PTZ00343 triose or hexose phos 98.1 0.00015 3.2E-09 67.8 15.3 134 140-278 51-185 (350)
56 TIGR00776 RhaT RhaT L-rhamnose 98.1 9.1E-05 2E-09 67.3 13.4 131 139-280 2-137 (290)
57 PF08449 UAA: UAA transporter 98.1 0.00015 3.2E-09 66.3 14.8 126 153-285 15-142 (303)
58 PRK11689 aromatic amino acid e 98.0 0.00016 3.4E-09 65.9 14.3 128 139-278 5-136 (295)
59 PRK15051 4-amino-4-deoxy-L-ara 98.0 7.2E-05 1.6E-09 57.9 9.7 62 216-277 46-107 (111)
60 PRK13499 rhamnose-proton sympo 97.9 0.0005 1.1E-08 63.5 14.6 143 135-285 4-159 (345)
61 PRK13499 rhamnose-proton sympo 97.8 0.0059 1.3E-07 56.5 20.5 226 51-278 77-340 (345)
62 COG0697 RhaT Permeases of the 97.8 0.0015 3.3E-08 58.4 16.4 143 135-283 4-147 (292)
63 PRK10452 multidrug efflux syst 97.8 0.00023 5.1E-09 55.6 9.3 67 215-281 38-105 (120)
64 KOG2922 Uncharacterized conser 97.8 0.00015 3.3E-09 65.1 9.1 221 52-284 68-311 (335)
65 PF06027 DUF914: Eukaryotic pr 97.7 0.0014 3E-08 60.5 14.5 75 207-281 79-153 (334)
66 PRK10532 threonine and homoser 97.6 0.001 2.2E-08 60.5 11.8 103 15-120 176-282 (293)
67 PF03151 TPT: Triose-phosphate 97.6 0.00094 2E-08 54.3 10.4 104 14-117 34-151 (153)
68 PF04142 Nuc_sug_transp: Nucle 97.5 0.00081 1.8E-08 59.5 10.3 73 212-284 22-94 (244)
69 PRK09541 emrE multidrug efflux 97.5 0.0013 2.8E-08 50.8 9.5 66 216-281 39-105 (110)
70 PRK10452 multidrug efflux syst 97.4 0.00093 2E-08 52.3 8.3 72 49-120 32-104 (120)
71 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.0013 2.9E-08 52.2 8.3 71 50-120 50-123 (129)
72 COG4975 GlcU Putative glucose 97.3 5.6E-05 1.2E-09 65.3 0.3 209 52-276 64-282 (288)
73 PRK10650 multidrug efflux syst 97.3 0.002 4.2E-08 49.6 8.6 68 50-117 38-106 (109)
74 PRK10650 multidrug efflux syst 97.3 0.0094 2E-07 45.8 12.1 62 216-277 44-106 (109)
75 COG2076 EmrE Membrane transpor 97.2 0.0024 5.3E-08 48.4 8.3 71 48-118 31-102 (106)
76 PRK11431 multidrug efflux syst 97.2 0.0025 5.5E-08 48.6 8.4 69 49-117 31-100 (105)
77 PF06800 Sugar_transport: Suga 97.2 0.0053 1.2E-07 54.7 11.5 117 163-285 7-128 (269)
78 PRK09541 emrE multidrug efflux 97.2 0.0031 6.6E-08 48.6 8.6 69 51-119 34-103 (110)
79 PRK11431 multidrug efflux syst 97.1 0.0057 1.2E-07 46.7 9.3 63 216-278 38-101 (105)
80 COG2076 EmrE Membrane transpor 97.0 0.0063 1.4E-07 46.2 8.7 64 216-279 39-103 (106)
81 PF04657 DUF606: Protein of un 96.8 0.082 1.8E-06 42.5 14.1 131 140-276 3-138 (138)
82 PF05653 Mg_trans_NIPA: Magnes 96.8 0.0084 1.8E-07 54.7 9.3 119 134-278 3-121 (300)
83 COG4975 GlcU Putative glucose 96.6 0.0013 2.7E-08 57.1 2.4 135 139-285 3-142 (288)
84 PF07857 DUF1632: CEO family ( 96.5 0.013 2.9E-07 51.8 8.0 67 218-284 66-139 (254)
85 PF00893 Multi_Drug_Res: Small 96.4 0.031 6.7E-07 41.7 8.5 57 54-110 36-93 (93)
86 PF00893 Multi_Drug_Res: Small 96.4 0.016 3.5E-07 43.2 6.9 55 216-270 38-93 (93)
87 KOG2234 Predicted UDP-galactos 96.2 0.38 8.1E-06 44.3 16.1 69 216-284 101-169 (345)
88 PF04657 DUF606: Protein of un 96.0 0.099 2.1E-06 42.0 10.1 102 14-116 29-138 (138)
89 PF10639 UPF0546: Uncharacteri 96.0 0.014 3E-07 45.1 4.8 68 50-117 44-112 (113)
90 PF06379 RhaT: L-rhamnose-prot 95.8 0.26 5.7E-06 45.2 13.1 145 134-285 3-159 (344)
91 KOG4510 Permease of the drug/m 95.7 0.0035 7.7E-08 55.1 0.6 68 212-279 102-169 (346)
92 KOG4314 Predicted carbohydrate 94.7 0.028 6.1E-07 47.3 3.1 66 219-284 65-130 (290)
93 COG5006 rhtA Threonine/homoser 94.6 0.3 6.4E-06 43.0 9.2 59 61-119 224-282 (292)
94 COG3238 Uncharacterized protei 94.3 1.9 4E-05 35.1 12.5 137 138-279 5-146 (150)
95 PF10639 UPF0546: Uncharacteri 94.1 0.093 2E-06 40.5 4.5 60 217-276 51-111 (113)
96 KOG2765 Predicted membrane pro 93.1 0.23 5.1E-06 45.9 6.1 71 212-282 164-234 (416)
97 TIGR00803 nst UDP-galactose tr 92.8 0.27 5.8E-06 42.6 5.9 62 55-116 160-221 (222)
98 KOG1444 Nucleotide-sugar trans 91.1 5.7 0.00012 36.2 12.4 133 139-276 13-146 (314)
99 KOG1441 Glucose-6-phosphate/ph 91.0 0.39 8.4E-06 44.1 4.9 70 206-275 82-151 (316)
100 KOG1580 UDP-galactose transpor 90.9 0.29 6.3E-06 42.5 3.7 73 47-119 241-313 (337)
101 COG3238 Uncharacterized protei 90.3 5.2 0.00011 32.5 10.3 104 13-117 32-144 (150)
102 PF06379 RhaT: L-rhamnose-prot 89.5 17 0.00038 33.6 17.0 229 49-278 75-339 (344)
103 KOG1581 UDP-galactose transpor 89.5 9.1 0.0002 34.8 12.1 125 153-284 29-160 (327)
104 KOG3912 Predicted integral mem 87.6 1.4 3.1E-05 39.4 5.7 66 214-279 93-158 (372)
105 KOG2922 Uncharacterized conser 86.8 0.24 5.3E-06 44.9 0.6 116 133-275 16-132 (335)
106 KOG1582 UDP-galactose transpor 83.8 3.1 6.6E-05 37.2 5.9 103 17-121 222-334 (367)
107 KOG2766 Predicted membrane pro 82.6 0.71 1.5E-05 40.7 1.5 73 207-279 78-150 (336)
108 PRK06638 NADH:ubiquinone oxido 81.6 32 0.0007 29.3 12.6 24 248-271 133-156 (198)
109 PLN00028 nitrate transmembrane 77.3 63 0.0014 31.2 13.4 21 233-253 382-402 (476)
110 COG5070 VRG4 Nucleotide-sugar 76.1 6.6 0.00014 34.1 5.3 70 51-120 228-297 (309)
111 KOG4831 Unnamed protein [Funct 75.8 3.3 7.2E-05 31.3 3.1 69 49-117 54-123 (125)
112 PRK02237 hypothetical protein; 74.8 35 0.00076 26.0 9.7 34 87-120 73-106 (109)
113 PF04342 DUF486: Protein of un 73.9 37 0.00079 25.8 8.3 81 36-116 19-105 (108)
114 PF02694 UPF0060: Uncharacteri 73.3 5.3 0.00012 30.3 3.6 34 87-120 71-104 (107)
115 PF04342 DUF486: Protein of un 73.2 3.7 8.1E-05 31.0 2.8 29 248-276 77-105 (108)
116 PRK02237 hypothetical protein; 70.4 41 0.00089 25.7 7.8 43 235-277 61-103 (109)
117 COG3169 Uncharacterized protei 68.9 14 0.00029 27.7 4.8 30 248-277 84-113 (116)
118 PRK13108 prolipoprotein diacyl 68.1 54 0.0012 31.9 10.2 24 259-282 254-277 (460)
119 PF07857 DUF1632: CEO family ( 66.4 96 0.0021 27.6 12.8 98 15-120 27-135 (254)
120 PF02694 UPF0060: Uncharacteri 65.9 13 0.00028 28.2 4.3 43 236-278 60-102 (107)
121 PF00558 Vpu: Vpu protein; In 62.8 7.5 0.00016 28.0 2.5 29 273-301 24-60 (81)
122 PF05297 Herpes_LMP1: Herpesvi 61.3 2.7 5.8E-05 37.6 0.0 94 71-174 47-142 (381)
123 PF06946 Phage_holin_5: Phage 61.2 43 0.00094 24.8 6.2 64 225-288 22-89 (93)
124 TIGR02840 spore_YtaF putative 59.2 22 0.00049 30.5 5.3 49 231-279 31-82 (206)
125 COG1742 Uncharacterized conser 57.9 10 0.00022 28.6 2.6 35 87-121 72-106 (109)
126 PF01102 Glycophorin_A: Glycop 57.8 7.3 0.00016 30.5 1.8 19 266-284 76-94 (122)
127 PF04971 Lysis_S: Lysis protei 56.8 11 0.00023 26.2 2.3 19 271-289 46-64 (68)
128 COG3086 RseC Positive regulato 54.7 30 0.00066 27.8 4.9 55 231-285 72-129 (150)
129 PF08507 COPI_assoc: COPI asso 51.1 33 0.00071 27.2 4.7 12 264-275 90-101 (136)
130 PF15102 TMEM154: TMEM154 prot 51.0 19 0.00042 29.0 3.3 19 267-285 69-87 (146)
131 PF02355 SecD_SecF: Protein ex 49.4 1.5E+02 0.0032 25.0 8.7 50 234-283 57-111 (189)
132 PF04246 RseC_MucC: Positive r 48.9 30 0.00065 27.3 4.2 20 235-254 69-88 (135)
133 PHA03049 IMV membrane protein; 47.4 26 0.00056 24.1 3.0 36 264-299 7-44 (68)
134 COG4858 Uncharacterized membra 45.0 1.2E+02 0.0026 25.6 7.1 30 44-73 158-187 (226)
135 COG5336 Uncharacterized protei 42.6 1.5E+02 0.0033 22.6 7.0 26 243-270 55-83 (116)
136 PF03348 Serinc: Serine incorp 41.6 2.9E+02 0.0063 26.6 10.3 25 258-282 282-306 (429)
137 PF12606 RELT: Tumour necrosis 41.4 37 0.00081 22.1 2.9 20 264-283 6-27 (50)
138 PF07444 Ycf66_N: Ycf66 protei 38.1 27 0.00058 25.4 2.1 28 258-285 4-31 (84)
139 PF09852 DUF2079: Predicted me 37.9 3.8E+02 0.0082 25.8 13.8 52 12-66 56-107 (449)
140 COG1742 Uncharacterized conser 37.5 1.4E+02 0.003 22.7 5.7 43 236-278 61-103 (109)
141 PRK04570 cell division protein 37.5 51 0.0011 28.8 4.0 26 268-293 16-42 (243)
142 PF06123 CreD: Inner membrane 37.0 3.3E+02 0.0073 26.3 9.9 94 79-185 298-398 (430)
143 PRK11469 hypothetical protein; 36.9 70 0.0015 27.0 4.8 41 234-274 41-82 (188)
144 PF15345 TMEM51: Transmembrane 36.9 33 0.00071 29.9 2.8 22 265-286 67-88 (233)
145 PRK11715 inner membrane protei 35.7 4E+02 0.0087 25.8 10.2 57 96-165 326-384 (436)
146 PF05961 Chordopox_A13L: Chord 35.5 50 0.0011 22.8 2.9 22 263-284 6-28 (68)
147 PF06609 TRI12: Fungal trichot 35.2 4.9E+02 0.011 26.4 19.2 28 90-117 369-397 (599)
148 PF03547 Mem_trans: Membrane t 35.0 3.7E+02 0.0081 24.9 12.9 7 183-189 41-47 (385)
149 PF14851 FAM176: FAM176 family 34.2 51 0.0011 26.9 3.4 16 265-280 32-47 (153)
150 cd01324 cbb3_Oxidase_CcoQ Cyto 33.9 14 0.0003 23.8 0.0 20 267-286 19-38 (48)
151 PF11346 DUF3149: Protein of u 33.6 45 0.00097 20.8 2.3 28 255-282 7-35 (42)
152 KOG1583 UDP-N-acetylglucosamin 33.4 33 0.00071 30.9 2.3 35 85-119 280-314 (330)
153 PRK15049 L-asparagine permease 32.9 1.4E+02 0.003 29.3 6.9 21 287-307 474-495 (499)
154 PRK15432 autoinducer 2 ABC tra 32.7 1.6E+02 0.0035 27.4 6.9 21 261-281 288-308 (344)
155 PRK12437 prolipoprotein diacyl 31.6 41 0.00088 30.2 2.7 24 259-282 235-258 (269)
156 TIGR00966 3a0501s07 protein-ex 31.5 2.7E+02 0.0059 24.4 7.9 41 232-272 122-162 (246)
157 PF11044 TMEMspv1-c74-12: Plec 31.5 15 0.00032 23.1 -0.1 6 273-278 22-27 (49)
158 TIGR01167 LPXTG_anchor LPXTG-m 31.2 41 0.00088 19.3 1.8 15 259-273 10-24 (34)
159 TIGR00892 2A0113 monocarboxyla 31.1 4.7E+02 0.01 24.9 11.5 9 163-171 270-278 (455)
160 PRK13021 secF preprotein trans 31.1 2.8E+02 0.006 25.3 8.0 39 234-272 152-190 (297)
161 PF14283 DUF4366: Domain of un 30.7 31 0.00067 30.0 1.7 6 273-278 175-180 (218)
162 KOG1623 Multitransmembrane pro 30.6 2E+02 0.0043 25.4 6.6 17 261-277 188-204 (243)
163 PRK14778 lipoprotein signal pe 30.5 65 0.0014 27.2 3.5 7 307-313 172-178 (186)
164 KOG1442 GDP-fucose transporter 30.5 13 0.00028 33.4 -0.7 53 225-277 120-172 (347)
165 KOG4831 Unnamed protein [Funct 30.2 71 0.0015 24.3 3.3 59 219-277 64-123 (125)
166 PF05545 FixQ: Cbb3-type cytoc 30.1 16 0.00036 23.4 -0.1 16 270-285 21-36 (49)
167 KOG2533 Permease of the major 30.0 4.9E+02 0.011 25.6 10.0 12 106-117 213-224 (495)
168 COG1971 Predicted membrane pro 29.9 86 0.0019 26.6 4.1 37 238-274 45-82 (190)
169 PF15471 TMEM171: Transmembran 29.8 30 0.00065 30.8 1.4 19 261-279 161-179 (319)
170 MTH00057 ND6 NADH dehydrogenas 29.2 3.5E+02 0.0075 22.7 10.0 24 248-271 132-155 (186)
171 COG4736 CcoQ Cbb3-type cytochr 29.1 29 0.00063 23.5 0.9 22 267-288 18-39 (60)
172 PRK13022 secF preprotein trans 27.6 3.4E+02 0.0073 24.5 8.0 42 231-272 150-191 (289)
173 PF15108 TMEM37: Voltage-depen 26.8 2.7E+02 0.0058 22.9 6.2 75 105-183 93-168 (184)
174 PF02158 Neuregulin: Neureguli 26.5 20 0.00043 33.5 -0.2 31 263-293 11-45 (404)
175 COG2271 UhpC Sugar phosphate p 26.3 67 0.0015 30.9 3.2 23 264-286 190-212 (448)
176 PRK00145 putative inner membra 26.2 4.3E+02 0.0093 22.8 9.2 14 157-170 85-98 (223)
177 PF06679 DUF1180: Protein of u 25.5 83 0.0018 26.0 3.2 6 299-304 139-144 (163)
178 PF15099 PIRT: Phosphoinositid 25.3 26 0.00056 27.5 0.2 29 265-293 90-119 (129)
179 PF15330 SIT: SHP2-interacting 25.0 1.1E+02 0.0024 23.3 3.6 21 262-282 4-25 (107)
180 PF12868 DUF3824: Domain of un 24.2 84 0.0018 25.1 2.9 10 264-273 9-18 (137)
181 PF07214 DUF1418: Protein of u 23.6 1.8E+02 0.0039 21.7 4.3 8 264-271 50-57 (96)
182 PF07168 Ureide_permease: Urei 23.3 53 0.0011 30.0 1.8 17 262-278 129-145 (336)
183 PRK00052 prolipoprotein diacyl 23.1 68 0.0015 28.7 2.5 27 258-284 236-262 (269)
184 PF09586 YfhO: Bacterial membr 22.6 8.9E+02 0.019 25.3 16.1 76 17-100 94-169 (843)
185 PF04306 DUF456: Protein of un 22.0 4.1E+02 0.0089 21.2 7.7 51 224-284 51-102 (140)
186 TIGR00544 lgt prolipoprotein d 21.5 77 0.0017 28.6 2.5 24 259-282 246-269 (278)
187 PF05393 Hum_adeno_E3A: Human 21.1 84 0.0018 23.0 2.1 8 261-268 37-44 (94)
188 PF08693 SKG6: Transmembrane a 21.1 64 0.0014 19.9 1.3 15 269-283 25-39 (40)
189 TIGR00910 2A0307_GadC glutamat 21.1 7.9E+02 0.017 24.0 10.6 15 168-182 331-345 (507)
190 COG3169 Uncharacterized protei 20.5 3.8E+02 0.0083 20.2 10.1 31 88-118 84-114 (116)
No 1
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-42 Score=298.99 Aligned_cols=283 Identities=50% Similarity=0.844 Sum_probs=264.4
Q ss_pred CccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHh
Q 021258 1 MRVPYGADNEYFKYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAK 80 (315)
Q Consensus 1 ~~~~~~~~~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~ 80 (315)
+|++|.+|+++|++|+++.++|.+++.+....++.+++...+.+.|++.|..+++.+.++.++++.|++|++.|++++.|
T Consensus 37 ~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaK 116 (327)
T KOG1581|consen 37 MTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAK 116 (327)
T ss_pred eecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHH
Confidence 68999999999999999999999999999998887776667778999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHH
Q 021258 81 CAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKL 160 (315)
Q Consensus 81 ~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l 160 (315)
+|+.+++|+.+.++.|+|++..+++...++..|+.++...+..+ . .+..+..++++|+.++..+.+++|+.+..|+++
T Consensus 117 scKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-s-~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~l 194 (327)
T KOG1581|consen 117 SCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-S-SSKSGRENSPIGILLLFGYLLFDGFTNATQDSL 194 (327)
T ss_pred HhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC-C-ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHH
Confidence 99999999999999999999999999999999999998876533 1 222235789999999999999999999999999
Q ss_pred HccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHH
Q 021258 161 FKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIM 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~ 240 (315)
.+++++++.++|++.++++++....+++..|.+.+.++|...+|+.+..+++++.|++++|.++++.+++.+|.+.+.+.
T Consensus 195 f~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ 274 (327)
T KOG1581|consen 195 FKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIM 274 (327)
T ss_pred hccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHH
Confidence 99999999999999999999999988888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 241 TTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 241 ~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
+.|+.++++++.++||+++++.||.|..++++|+.+..+.|+|++
T Consensus 275 ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~~ 319 (327)
T KOG1581|consen 275 TTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKKN 319 (327)
T ss_pred HHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999888744
No 2
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=8e-37 Score=279.10 Aligned_cols=272 Identities=36% Similarity=0.530 Sum_probs=241.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHH
Q 021258 13 KYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGT 92 (315)
Q Consensus 13 ~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~ 92 (315)
++|.+++++|+..+.+.+.++....+.+.+++.|+++|++.++++.++..++|.|++|+|.|+++++|+++|+++|+++.
T Consensus 30 ~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~ 109 (303)
T PF08449_consen 30 PFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGV 109 (303)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH
Confidence 68999999999999999988776666344567899999999999999999999999999999999999999999999999
Q ss_pred HHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHH
Q 021258 93 LIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQI 172 (315)
Q Consensus 93 l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~ 172 (315)
+++|||++++|+++++++++|++++...+..++..+ .........|+++++++.+++|+..++|||++++++.++.++|
T Consensus 110 l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~-~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~m 188 (303)
T PF08449_consen 110 LILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS-NSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELM 188 (303)
T ss_pred HhcCccccHHHHHHHHHHHhhHheeeeccccccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 999999999999999999999999887754222111 1011222349999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--hCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Q 021258 173 FYTTLCSCVLSLSGLIL--EGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVL 250 (315)
Q Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~il 250 (315)
+|.+.+++++.++..+. .++..+..++...+|..+..++..++++++++.+++..+++.||.+.+++.++|+++++++
T Consensus 189 fy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sill 268 (303)
T PF08449_consen 189 FYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILL 268 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Confidence 99999999998887766 7787777788777888888888889999999999999999999999999999999999999
Q ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 251 SCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 251 s~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
|+++||+++++.+|+|+++++.|..++.+.|+||+
T Consensus 269 S~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 269 SVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 99999999999999999999999999998888764
No 3
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=254.30 Aligned_cols=277 Identities=31% Similarity=0.511 Sum_probs=246.9
Q ss_pred CccccCC---CCCcccchhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHH
Q 021258 1 MRVPYGA---DNEYFKYSLFLVFCNRLMTSAVSAGTLIASR-KAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQ 76 (315)
Q Consensus 1 ~~~~~~~---~~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~ 76 (315)
+|-+|+. ..++|++.+.++++|+++..+++-+....++ .+.+ +.+.+.|...++.+.+++...|.|+||+|.+++
T Consensus 36 trGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D-~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTq 114 (337)
T KOG1580|consen 36 TRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEID-NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQ 114 (337)
T ss_pred hccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccccc-CCcchHHHHHHHHHHHHHHhccchhcccCCcHH
Confidence 3567874 4678999999999999999999866555444 3444 456688999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHH
Q 021258 77 TLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTF 156 (315)
Q Consensus 77 ~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~ 156 (315)
.+-|+|.|+++|+++.++.|++++|++++.++++.+||+++.+++... ...++.....|-++.++|...+++....
T Consensus 115 VlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv----~g~e~~t~g~GElLL~lSL~mDGlTg~~ 190 (337)
T KOG1580|consen 115 VLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV----GGAEDKTFGFGELLLILSLAMDGLTGSI 190 (337)
T ss_pred HhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc----CCCcccccchHHHHHHHHHHhcccchhH
Confidence 999999999999999999999999999999999999999999874321 1123466778999999999999999999
Q ss_pred HHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Q 021258 157 QDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTF 236 (315)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 236 (315)
|+++.+.+..+..++|+|.++++.+.+...++++||.++...|.+.+|..|+.+.+++++++++|.+++..+...+|.+.
T Consensus 191 Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtC 270 (337)
T KOG1580|consen 191 QDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTC 270 (337)
T ss_pred HHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeE
Confidence 99998888878899999999999999988889999999988898999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 237 ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 237 si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
|++.+.++.++++.|+++|+++++.+||.|.++++.++..-....|
T Consensus 271 SivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 271 SIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred EEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 9999999999999999999999999999999999998877664444
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.3e-31 Score=244.79 Aligned_cols=270 Identities=12% Similarity=0.052 Sum_probs=208.6
Q ss_pred cccCCCCCcccchhHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHh
Q 021258 3 VPYGADNEYFKYSLFLVFCNRLMTSAVSAGTLIA--SRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAK 80 (315)
Q Consensus 3 ~~~~~~~~~f~~p~~lt~~q~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~ 80 (315)
|||..+. |++|.++++.|+.++.+.+.+.... ++++..++++++..++.|+++.....+.|.|++|++++.+++++
T Consensus 21 NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 21 NKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred HHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6788863 8999999999999998776654211 11111123456667889999888889999999999999999999
Q ss_pred hcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHH
Q 021258 81 CAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKL 160 (315)
Q Consensus 81 ~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l 160 (315)
++.|+++++++++++|||++++++++++++++|+++.... + .+.+..|++++++++++++++.++.||.
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~----~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~ 167 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT----E-------LSFNWAGFLSAMISNITFVSRNIFSKKA 167 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC----c-------ccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875321 1 1345679999999999999999999998
Q ss_pred HccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHh-Hhhh----hChH-HHHHHHHHHH-HHHHHHHHHHHHHhhhCh
Q 021258 161 FKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAI-DFVY----HHLD-CFFDVALLST-VATTSQFFISYTIRTFGA 233 (315)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~~~a 233 (315)
.++.+.++.+.++|++..+++.++|.....++..... +... .... .+...+..+. +..+.+.+++.+++++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa 247 (302)
T TIGR00817 168 MTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSP 247 (302)
T ss_pred hccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 7744567889999999999988888755433211100 0100 0111 1211222222 233344566789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 234 LTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 234 ~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
+++++.++++|++++++|++++||++++.+++|.+++++|++++++.|+||+
T Consensus 248 ~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 248 LTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred hHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999999999887665554
No 5
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=7.4e-29 Score=230.53 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=201.1
Q ss_pred cccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHH
Q 021258 3 VPYGADNEYFKYSLFLVFCNRLMTSAVSAGTLIASRKAID----PVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTL 78 (315)
Q Consensus 3 ~~~~~~~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~ 78 (315)
|||..+. +++|.+++++|++++++++.++...+.++.+ .+.++++.++.|+++.......+.|+++++++.+.+
T Consensus 68 nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~i 145 (350)
T PTZ00343 68 NKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHV 145 (350)
T ss_pred HHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 5666654 7889999999999998876554322211111 122445678999998877777889999999999999
Q ss_pred HhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHH
Q 021258 79 AKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQD 158 (315)
Q Consensus 79 l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~ 158 (315)
+|++.|+++++++++++|||++++++++++++++|+++.+.. | ...++.|++++++|++++++++++.|
T Consensus 146 ika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~----~-------~~~~~~G~~~~l~s~~~~a~~~i~~k 214 (350)
T PTZ00343 146 VKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK----E-------LHFTWLAFWCAMLSNLGSSLRSIFAK 214 (350)
T ss_pred HHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc----c-------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987643 2 14568899999999999999999999
Q ss_pred HHHccCC-----CChHHHHHHHHHHHHHHHHHHHH-HhCc-hhHHhHhh--hhChHHHHHHHHH----HHHHHHHHHHHH
Q 021258 159 KLFKGYD-----MEIHNQIFYTTLCSCVLSLSGLI-LEGH-LFLAIDFV--YHHLDCFFDVALL----STVATTSQFFIS 225 (315)
Q Consensus 159 ~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~l~~~----~~~~~~~~~~~~ 225 (315)
+.+++++ .++.+...+...++.++++|..+ .++. ....++.. ......+..+++. +++..+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f 294 (350)
T PTZ00343 215 KTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAF 294 (350)
T ss_pred HHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887643 45666666778889888888754 3321 11111100 0011111112222 233333344555
Q ss_pred HHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhh
Q 021258 226 YTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 280 (315)
Q Consensus 226 ~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~ 280 (315)
.++++++|.++++.+++||++++++|++++||++++.+++|.+++++|+.++++-
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999999999999888765
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=9e-28 Score=218.88 Aligned_cols=270 Identities=16% Similarity=0.175 Sum_probs=211.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcch
Q 021258 9 NEYFKYSLFLVFCNRLMTSAVSAGTLIASRKAI----DPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKM 84 (315)
Q Consensus 9 ~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p 84 (315)
+.+++.|.+-++..++.-.++-..++.+|+.+. ..++++++|++.+++...++++.+.|++|++.+.++++.++..
T Consensus 37 ~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i 116 (334)
T PF06027_consen 37 NKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSI 116 (334)
T ss_pred hcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhh
Confidence 347888999999998776666555555554321 2357888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccC
Q 021258 85 IPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGY 164 (315)
Q Consensus 85 ~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~ 164 (315)
+++++++++++|+|+++.|++|++++++|+.++...|.... +++++.++...|+++++.|+++||++++++|++.|+.
T Consensus 117 ~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~--~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~ 194 (334)
T PF06027_consen 117 PFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSG--SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA 194 (334)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccccc--ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999888764211 1112346789999999999999999999999998864
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-hCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Q 021258 165 DMEIHNQIFYTTLCSCVLSLSGLIL-EGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTR 243 (315)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~ 243 (315)
+..+.+....++++++..+...+ +.+- +...+.+.+.+..++..+++-.+...+.-..++..||+..++-....
T Consensus 195 --~~~~~lg~~Glfg~ii~~iq~~ile~~~---i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTs 269 (334)
T PF06027_consen 195 --PRVEFLGMLGLFGFIISGIQLAILERSG---IESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTS 269 (334)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHheehhh---hhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHh
Confidence 56788888888998887765432 3221 11112233433333333333334444556679999999999999999
Q ss_pred HHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 244 QLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 244 ~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
.+.++++++++||+++++..++|.++++.|++++....++.+
T Consensus 270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 999999999999999999999999999999988886655443
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=5.5e-27 Score=217.61 Aligned_cols=268 Identities=15% Similarity=0.219 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCchh---hHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRK-AIDPVAPVY---KYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIW 90 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll 90 (315)
|..++++|+.++.+++.++.+++++ +..++.+++ .+.+.|++......+.+.|++|++++.+.++.++.|++++++
T Consensus 42 ~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~ll 121 (358)
T PLN00411 42 IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFIL 121 (358)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHH
Confidence 6668999999999888877655432 222223343 345566665445568899999999999999999999999999
Q ss_pred HHHH------hccccChhhHHHHHHHHHhHHHHhcCCCCCCCC------------C--CCCCCCchhhHHHHHHHHHHhh
Q 021258 91 GTLI------MQKRYKGYDYFLALLVTLGCSIFILFPSGADLS------------P--YSKGRENTVWGVSLMVGYLGFD 150 (315)
Q Consensus 91 ~~l~------~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~------------~--~~~~~~~~~~G~~~~~~s~~~~ 150 (315)
++++ +|||.+++++++++++++|+.++...++..... . ...+..+...|.++++.++++|
T Consensus 122 a~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~w 201 (358)
T PLN00411 122 AIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFV 201 (358)
T ss_pred HHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 9999 699999999999999999998876532100000 0 0001123356999999999999
Q ss_pred hhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHH-HHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021258 151 GFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSL-SGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIR 229 (315)
Q Consensus 151 a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (315)
+++++.+++..+++. +.....+++..++.+... +.+..+++....+ ....+.. ...+++.++++.+++.+++++++
T Consensus 202 a~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~i~y~~i~t~lay~lw~~~v~ 278 (358)
T PLN00411 202 SVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW-IIHFDIT-LITIVTMAIITSVYYVIHSWTVR 278 (358)
T ss_pred HHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCcccc-eeccchH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999877763 334455555555444333 3333332211111 0011222 23355566666677888999999
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 230 TFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 230 ~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
+.+|+++++..+++|++++++|++++||++++.+++|.+++++|+++..+.|+||.
T Consensus 279 ~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 279 HKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred ccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999987666554
No 8
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9e-28 Score=205.73 Aligned_cols=271 Identities=28% Similarity=0.402 Sum_probs=239.9
Q ss_pred CCCccc-chhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHH
Q 021258 8 DNEYFK-YSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIP 86 (315)
Q Consensus 8 ~~~~f~-~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~ 86 (315)
+.++|+ +-..+|++|+++=..+.++++..-+. .++..|||.|..++.+....+.+.+-|+.|++.|+++++|+|+.++
T Consensus 67 ~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~-k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliP 145 (367)
T KOG1582|consen 67 NVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQT-KRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIP 145 (367)
T ss_pred ccccCcccchHHHHHHHHHHHhhhheEEEeecc-cceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhh
Confidence 456777 88999999999888777776643322 3557999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCC
Q 021258 87 VMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDM 166 (315)
Q Consensus 87 ~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~ 166 (315)
+|+.+.++-++|+++.++.+..++.+|++++...|++ . .+.++..|+++.-.|.+++|.-...||+.++.++.
T Consensus 146 VmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~----~---sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ 218 (367)
T KOG1582|consen 146 VMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQ----T---SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA 218 (367)
T ss_pred hhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccc----c---CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 9999999999999999999999999999999887531 1 14788999999999999999999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhCh-HHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Q 021258 167 EIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHL-DCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQL 245 (315)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v 245 (315)
+..|+.+|....+.++.+.....+|++.++|.+-..+| +.....+..++.+.+++.+.-..++..+|.++..+.+.++.
T Consensus 219 ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKa 298 (367)
T KOG1582|consen 219 SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKA 298 (367)
T ss_pred CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhH
Confidence 88999999999999998888888999888888765555 46666677788899999888889999999999999999999
Q ss_pred HHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccCC
Q 021258 246 VSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEK 286 (315)
Q Consensus 246 ~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~~ 286 (315)
+++++|+++|..++|....-|..++..|+++..++|++|.+
T Consensus 299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~~ 339 (367)
T KOG1582|consen 299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKIP 339 (367)
T ss_pred HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCCc
Confidence 99999999999999999999999999999999999976643
No 9
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=222.12 Aligned_cols=274 Identities=18% Similarity=0.189 Sum_probs=226.3
Q ss_pred ccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHH
Q 021258 2 RVPYGADNEYFKYSLFLVFCNRLMTSAVSAGTLIASRK---AIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTL 78 (315)
Q Consensus 2 ~~~~~~~~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~ 78 (315)
-|||..+..+|++|.++|.+|..++.+........+-. +.+.+.+++..++.|+++.++..++|.|++|+|++...+
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence 48899999999999999999887777665554333322 112346788889999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHH
Q 021258 79 AKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQD 158 (315)
Q Consensus 79 l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~ 158 (315)
+|++.|+++.++++++.+|++++..+++++++..||++.+.. | .+.+++|.+.++++.+..++++++.+
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~----e-------~~fn~~G~i~a~~s~~~~al~~I~~~ 183 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT----E-------LSFNLFGFISAMISNLAFALRNILSK 183 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec----c-------ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764 2 36899999999999999999999999
Q ss_pred HHHc--cCCCChHHHHHHHHHHHHHHHH-HHHHH-hCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChH
Q 021258 159 KLFK--GYDMEIHNQIFYTTLCSCVLSL-SGLIL-EGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGAL 234 (315)
Q Consensus 159 ~l~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 234 (315)
++++ +++.++.+++.|+++.+...++ |.... +++....+.....+.+ ....+...++.+..|...+.++.++||.
T Consensus 184 ~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~f~~Nls~f~~ig~tSal 262 (316)
T KOG1441|consen 184 KLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVLAFLLNLSAFLVIGRTSAL 262 (316)
T ss_pred HhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHHHHHHHHHHHHHHcccCch
Confidence 9984 5678999999999999999888 76443 2321100010011112 2223344578888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccCCC
Q 021258 235 TFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKP 287 (315)
Q Consensus 235 ~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~~~ 287 (315)
+.++.+.+|.++.++.|+++|++++++.+..|+++.+.|+.+|++.|++++++
T Consensus 263 T~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 263 TYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred hhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999888876643
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.94 E-value=3.5e-24 Score=194.78 Aligned_cols=253 Identities=12% Similarity=0.067 Sum_probs=194.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHH-HHHHHHhhHhc-ccCchHHHHHHhhcchHHHHHH
Q 021258 13 KYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSN-ILTTTCQYEAL-KYVSFPVQTLAKCAKMIPVMIW 90 (315)
Q Consensus 13 ~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~al-~~v~~~~~~~l~~~~p~~~~ll 90 (315)
-.|..++++|+.++.++..++...+|++.+++++++.....|.+. .....+.+.+. ++++.+.+.++.++.|++++++
T Consensus 34 ~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~ll 113 (292)
T PRK11272 34 WPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCF 113 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence 359999999999999888777655554333344455556677664 45677788888 9999998999999999999999
Q ss_pred HHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHH
Q 021258 91 GTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHN 170 (315)
Q Consensus 91 ~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~ 170 (315)
+.+ +|||++++++.+++++++|+.++..++ + .+....|.++.+.++++++.+.+..||..++ ++..
T Consensus 114 a~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~---~-------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~ 179 (292)
T PRK11272 114 SRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG---N-------LSGNPWGAILILIASASWAFGSVWSSRLPLP---VGMM 179 (292)
T ss_pred HHH-hcccCchhHHHHHHHHHHhHHHHhcCc---c-------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchH
Confidence 986 699999999999999999998875331 1 1234579999999999999999998886432 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHH-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q 021258 171 QIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIV 249 (315)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~i 249 (315)
...+....+.+...+.....++... ...+...|..+++.++ ++.+++.++++++|+.++.++++..+++|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 180 AGAAEMLAAGVVLLIASLLSGERLT----ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 4556666666666555433322110 0123455666777766 4677888999999999999999999999999999
Q ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccc
Q 021258 250 LSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 283 (315)
Q Consensus 250 ls~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~ 283 (315)
++++++||++++.+++|.++++.|+++.++.++|
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887765553
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=1.5e-23 Score=191.33 Aligned_cols=255 Identities=13% Similarity=0.169 Sum_probs=185.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHH-HHHHHhhHhccc-CchHHHHHHhhcchHHHHHHH
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNI-LTTTCQYEALKY-VSFPVQTLAKCAKMIPVMIWG 91 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~al~~-v~~~~~~~l~~~~p~~~~ll~ 91 (315)
.|..++++|++++.+...+.. +++ +.+++..+..+++.. ....+.+.+++| ++.+.+.++.++.|+++++++
T Consensus 31 ~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~ 104 (299)
T PRK11453 31 PPLMLAGLRFMLVAFPAIFFV--ARP----KVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLG 104 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHh--cCC----CCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHH
Confidence 499999999998776655433 222 223444555566543 344567788887 677888888899999999999
Q ss_pred HHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCC-CChHH
Q 021258 92 TLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYD-MEIHN 170 (315)
Q Consensus 92 ~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~-~~~~~ 170 (315)
++++|||++++++++++++++|+.++...+. + ....++.|+++++.++++++++.+.+||..++.+ .+...
T Consensus 105 ~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~--~------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~ 176 (299)
T PRK11453 105 AFTFGERLQGKQLAGIALAIFGVLVLIEDSL--N------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMS 176 (299)
T ss_pred HHHhcCcCcHHHHHHHHHHHHhHHHhccccC--C------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhH
Confidence 9999999999999999999999988764311 0 0123467999999999999999999999765432 12223
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCchhHHhHhhhhChHHHHHHHHHHH-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Q 021258 171 QIFYTTLCSCVLSLSG-LILEGHLFLAIDFVYHHLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSI 248 (315)
Q Consensus 171 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ 248 (315)
..++....+.+..... ...+++.....+....++..|..++++++ ++.+++.+++.++++.++.+++++.+++|+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ 256 (299)
T PRK11453 177 LVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGL 256 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3334444433322222 12222211111111234566777788875 566788899999999999999999999999999
Q ss_pred HHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 249 VLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 249 ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
+++++++||++++.+++|.++++.|+++..+.++
T Consensus 257 ~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 257 ASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999998877665
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.93 E-value=5.3e-24 Score=193.85 Aligned_cols=255 Identities=11% Similarity=-0.016 Sum_probs=181.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHH-HHHHHHHHhhHhccc----CchHHHHHHhhcchHHHH
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSM-SNILTTTCQYEALKY----VSFPVQTLAKCAKMIPVM 88 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~al~~----v~~~~~~~l~~~~p~~~~ 88 (315)
.|..+.++|+.++.++..+.. ++++. ++..++++..+. .......+.+.+++| .+.....++.++.|++++
T Consensus 31 ~P~~~~~~R~~~a~l~l~~~~--~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ 106 (295)
T PRK11689 31 GPVGGAAMIYSVSGLLLLLTV--GFPRL--RQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTI 106 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHc--ccccc--ccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHH
Confidence 499999999999988876542 22211 222334444444 345566677777765 455566788999999999
Q ss_pred HHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCCh
Q 021258 89 IWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEI 168 (315)
Q Consensus 89 ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~ 168 (315)
+++++++|||++++++++++++++|+.++...+.+.+..+..++..+...|+++.+.++++|++++++.||..+++ ++
T Consensus 107 ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~ 184 (295)
T PRK11689 107 LFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NG 184 (295)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--Cc
Confidence 9999999999999999999999999988764321000000000112345799999999999999999999975543 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Q 021258 169 HNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSI 248 (315)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ 248 (315)
....+ ..+.+...+....+++.. ...+++.|..+++.++.+.+++.++++++|+.+|+++++..+++|++++
T Consensus 185 ~~~~~---~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~ 256 (295)
T PRK11689 185 ITLFF---ILTALALWIKYFLSPQPA-----MVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSA 256 (295)
T ss_pred hhHHH---HHHHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHH
Confidence 33322 222233333222232211 1234456666667777788899999999999999999999999999999
Q ss_pred HHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 249 VLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 249 ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
+++++++||++++.+++|.++++.|+++.....|
T Consensus 257 i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 257 ALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 9999999999999999999999999877765443
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.93 E-value=9.9e-24 Score=188.32 Aligned_cols=243 Identities=15% Similarity=0.083 Sum_probs=191.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHH-HHHHHHHhhHhcccCchHHHHHHhhcchHHHHHH
Q 021258 12 FKYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIW 90 (315)
Q Consensus 12 f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll 90 (315)
...|..+++.|++.+.+...+..+++ +++++++.++..+.+ ..+...+.+.|++|++.+...++.++.|++++++
T Consensus 15 ~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~ 90 (260)
T TIGR00950 15 QVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLL 90 (260)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHH
Confidence 34588888999888887776654333 223455566666655 5677889999999999999999999999999999
Q ss_pred HHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHH
Q 021258 91 GTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHN 170 (315)
Q Consensus 91 ~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~ 170 (315)
+.+++|||++++++.+++++++|+.++...+ + .+.+..|+++.++++++++.+.+..|+..++.+.++..
T Consensus 91 ~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~---~-------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~ 160 (260)
T TIGR00950 91 SDLMGKERPRKLVLLAAVLGLAGAVLLLSDG---N-------LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQ 160 (260)
T ss_pred HHHHccCCCcHHHHHHHHHHHHhHHhhccCC---c-------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHH
Confidence 9999999999999999999999998875331 1 13557899999999999999999999987665433434
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHH-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q 021258 171 QIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIV 249 (315)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~i 249 (315)
...+.+.++.++..+.....++.. ..+...|..+++.++ ++.+++.++++++|+.++.+++++.+++|+++.+
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l 234 (260)
T TIGR00950 161 FTGWVLLLGALLLLPFAWFLGPNP------QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALL 234 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 444556677777766654433211 113344555566665 4577889999999999999999999999999999
Q ss_pred HHHHHccCCCcchhhhhHHHHHHHH
Q 021258 250 LSCVWFRHPLSWEQCIGSIIVFGAL 274 (315)
Q Consensus 250 ls~l~f~e~~t~~~~iG~~lvl~gv 274 (315)
++++++||++++.+++|.++++.|+
T Consensus 235 l~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 235 LGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999886
No 14
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.6e-24 Score=189.15 Aligned_cols=272 Identities=16% Similarity=0.125 Sum_probs=217.6
Q ss_pred ccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHH
Q 021258 2 RVPYGADNEYFKYSLFLVFCNRLMTSAVSAGTLIASRKAIDP--VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLA 79 (315)
Q Consensus 2 ~~~~~~~~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l 79 (315)
.|||.+++.+|+...++...|++.+.+..+..-+.+-.+.++ +...|+++|+++++.+..+.+..+++|+++++++++
T Consensus 30 vNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~ 109 (314)
T KOG1444|consen 30 VNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVF 109 (314)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHH
Confidence 489999999998888888899998887766533222122221 445678999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHH
Q 021258 80 KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDK 159 (315)
Q Consensus 80 ~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~ 159 (315)
|...|+.+++.+.+++|+|+++..|.++..+.+|....... | ..++..|+.++...++..+.+.+..||
T Consensus 110 kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~----d-------~sf~~~gY~w~~~n~~~~a~~~v~~kk 178 (314)
T KOG1444|consen 110 KNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT----D-------LSFNLRGYSWALANCLTTAAFVVYVKK 178 (314)
T ss_pred hhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc----c-------ceecchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766544 2 145666999999999999999988888
Q ss_pred HHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhh---hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Q 021258 160 LFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFV---YHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTF 236 (315)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 236 (315)
-.+..+.+.+++++|.++++.+.+....++.||+. ...+. ..++..+..+.+.|+++....++.+.+.+..||++.
T Consensus 179 ~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~ 257 (314)
T KOG1444|consen 179 SVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTT 257 (314)
T ss_pred hhccccccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccce
Confidence 77766677889999999999988877777778754 22221 123455666677788898889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 237 ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 237 si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
++++......+.+.+.+++|+++++..++|+.+-+.|=+.+++.+.++|
T Consensus 258 tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 258 TIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred eehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 9999666666666666667779999999999997755445555554333
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.92 E-value=3.4e-23 Score=188.65 Aligned_cols=244 Identities=8% Similarity=0.012 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCC--C-CCchhhH--HHHH-HHHHHHHHHhhHhcccCchHHHHHHhhcchHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAID--P-VAPVYKY--CLVS-MSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVM 88 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~~--~-~~~~~~~--~~~~-~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ 88 (315)
|..++++|++++.+++..++..++++.+ + .+++++. ...+ +..+..+.+.++|++++|.+.+.++.++.|++++
T Consensus 35 ~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~ 114 (296)
T PRK15430 35 ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNI 114 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 8999999999998876655544332111 0 1122332 2244 4466778999999999999999999999999999
Q ss_pred HHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCCh
Q 021258 89 IWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEI 168 (315)
Q Consensus 89 ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~ 168 (315)
+++++++|||+++++|++++++++|+.++...+ +... .+.++++++|+.+.+.+|+..++...+.
T Consensus 115 l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-----------~~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~~~ 179 (296)
T PRK15430 115 VLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-----------GSLP----IIALGLAFSFAFYGLVRKKIAVEAQTGM 179 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-----------CCcc----HHHHHHHHHHHHHHHHHHhcCCCCchhH
Confidence 999999999999999999999999998876321 0111 3466678899999988877532211122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHH-HHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Q 021258 169 HNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDC-FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVS 247 (315)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~ 247 (315)
.....+..+++.+...+. ..... .....++.. +..+++.++.+.+++.++++++++.+|.+++++.+++|+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a 253 (296)
T PRK15430 180 LIETMWLLPVAAIYLFAI--ADSST----SHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLM 253 (296)
T ss_pred HHHHHHHHHHHHHHHHHH--ccCCc----ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 222333333333222111 11110 001122322 23334446677889999999999999999999999999999
Q ss_pred HHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 248 IVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
++++++++||++++.+++|+++++.|+.+...
T Consensus 254 ~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 254 FLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876555443
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=7.7e-23 Score=186.05 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=181.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHH
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL 93 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l 93 (315)
.|..++++|++++.+++.+..+.++.+. ++++++..+..|++......+.++|++|+|.+.++++.++.|+++++++
T Consensus 39 ~~~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~-- 115 (293)
T PRK10532 39 GAPGVTALRLALGTLILIAIFKPWRLRF-AKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS-- 115 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh--
Confidence 4888999999999988776553333222 2345556677888877778889999999999999999999999988776
Q ss_pred HhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHH
Q 021258 94 IMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIF 173 (315)
Q Consensus 94 ~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~ 173 (315)
+||+.+. ..+.++++|+.++...+. + ....+..|+++.+.++++++++.+..||..+++ ++... .
T Consensus 116 --~~~~~~~--~~~~i~~~Gv~li~~~~~--~------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~ 180 (293)
T PRK10532 116 --SRRPVDF--VWVVLAVLGLWFLLPLGQ--D------VSHVDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-A 180 (293)
T ss_pred --cCChHHH--HHHHHHHHHHheeeecCC--C------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-H
Confidence 3555544 456678899887653211 1 013356799999999999999999999886553 34444 4
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHH-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Q 021258 174 YTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST-VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSC 252 (315)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~ 252 (315)
+...++.+...+.....+.. ...+...|..++++++ ++.+++.++++++++.+|.+++++.+++|+++.++++
T Consensus 181 ~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~ 254 (293)
T PRK10532 181 IGSLIAALIFVPIGALQAGE------ALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGM 254 (293)
T ss_pred HHHHHHHHHHHHHHHHccCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHH
Confidence 55566666665654333210 0123334544556665 4567778899999999999999999999999999999
Q ss_pred HHccCCCcchhhhhHHHHHHHHHhhhhhccc
Q 021258 253 VWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 283 (315)
Q Consensus 253 l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~ 283 (315)
+++||++++.+++|.+++++|+....+..+|
T Consensus 255 l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 255 IFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988777655443
No 17
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.8e-25 Score=189.10 Aligned_cols=259 Identities=20% Similarity=0.318 Sum_probs=199.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhccc-CchHHHHHHhhcchHHHHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKY-VSFPVQTLAKCAKMIPVMIWGTL 93 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~-v~~~~~~~l~~~~p~~~~ll~~l 93 (315)
-+.+|+.|+++.+.-.+++. -+-...+++.|.|+|...-..++..+.++|+++++ ++.|.++++|+..++.+|+++++
T Consensus 33 gNLITFaqFlFia~eGlif~-skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~i 111 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFT-SKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWI 111 (330)
T ss_pred eeehHHHHHHHHHHhceeee-ccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHH
Confidence 46899999998888877664 12234467899999998777778889999999998 89999999999999999999999
Q ss_pred HhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCC-----CC--CC--CchhhHHHHHHHHHHhhhhhHHHHHHHHccC
Q 021258 94 IMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPY-----SK--GR--ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGY 164 (315)
Q Consensus 94 ~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~-----~~--~~--~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~ 164 (315)
+.+||++.+|+.++++.++|+++....+.. |..+. .+ .. .....|+.++.++.+.+|...++||..+|||
T Consensus 112 l~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~-d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ky 190 (330)
T KOG1583|consen 112 LLGKRYSLRQYSSVLMITIGIIICTLFSSK-DGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKY 190 (330)
T ss_pred hccceeehhhhhhHHhhhhhheeEEeecCc-chhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887775432 22220 00 11 2234688889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhCh--------HHHHHHHHHHHHHHHHHHH-HH---HHHhhhC
Q 021258 165 DMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHL--------DCFFDVALLSTVATTSQFF-IS---YTIRTFG 232 (315)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~ 232 (315)
+-++.|.+||....+.+.++. ..++..+.+.....++ ...+.....-++..+.|+. +- ....+++
T Consensus 191 GKh~~EalFytH~LsLP~Flf---~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~ 267 (330)
T KOG1583|consen 191 GKHWKEALFYTHFLSLPLFLF---MGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETS 267 (330)
T ss_pred cCChHHHHHHHHHhccchHHH---hcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceec
Confidence 999999999999988655432 2344433333221111 0122223334566777753 32 2357889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 233 ALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 233 a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+.+++++.++|+.+++++|.+.|++++++++|+|..++++|-.++.
T Consensus 268 sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 268 SLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998755444
No 18
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.91 E-value=2.2e-23 Score=181.86 Aligned_cols=257 Identities=14% Similarity=0.211 Sum_probs=209.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCchhhHH----HHHHHHHHHHHHhhHhcccCchHHHHHHhh
Q 021258 9 NEYFKYSLFLVFCNRLMTSAVSAGTLIASRKAI---DPVAPVYKYC----LVSMSNILTTTCQYEALKYVSFPVQTLAKC 81 (315)
Q Consensus 9 ~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~l~~~al~~v~~~~~~~l~~ 81 (315)
+.+|++|++++.+|+++-++++..+.+..+.+. +....|++++ +.+++.+....+.|+|++|++.+.+++.|+
T Consensus 39 ~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KS 118 (349)
T KOG1443|consen 39 TKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKS 118 (349)
T ss_pred hcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccc
Confidence 456999999999999999999876655433322 2245666665 888888999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHH
Q 021258 82 AKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLF 161 (315)
Q Consensus 82 ~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~ 161 (315)
+.++|+.+.+..+--||+++.-.+.++++.+|+.++++++ .+++..|..+++.+.++.|++..+.++++
T Consensus 119 Ssi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks-----------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll 187 (349)
T KOG1443|consen 119 SSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS-----------TQFNIEGFFLVLAASLLSGLRWAFTQMLL 187 (349)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc-----------cceeehhHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999887779999999999999999999988763 25788999999999999999999999998
Q ss_pred ccCC---CChHHHHHHHHHHHHHHHHHH-HHHhCchh----HHhHhhhhCh-HHHHHHHHHHHHHHHHHH---HHHHHHh
Q 021258 162 KGYD---MEIHNQIFYTTLCSCVLSLSG-LILEGHLF----LAIDFVYHHL-DCFFDVALLSTVATTSQF---FISYTIR 229 (315)
Q Consensus 162 ~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~-~~~~~l~~~~~~~~~~~~---~~~~~~~ 229 (315)
++.+ .+|...+++.+++..+.++|. +.++|... +.+++ +++ ..+..+...+.++..+.. +-+....
T Consensus 188 ~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~--~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~ 265 (349)
T KOG1443|consen 188 RNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRF--QDTGLILRVIGLISLGGLLAFLLEFSEFLLLS 265 (349)
T ss_pred hcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 7654 578999999999888777775 55666422 22222 222 345555555555555543 3455789
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 230 TFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 230 ~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+++..+.|+++..+.+.+.+++..+.+|.++..+|.|..+.+.|+.++.
T Consensus 266 ~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 266 RTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred eccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999884
No 19
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.87 E-value=1.2e-21 Score=163.76 Aligned_cols=277 Identities=13% Similarity=0.121 Sum_probs=212.7
Q ss_pred ccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhh
Q 021258 2 RVPYGADNEYFKYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKC 81 (315)
Q Consensus 2 ~~~~~~~~~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~ 81 (315)
||+|..+..+|+-...+.++|.+++.+-+.+.-+.+-...+ ..+.|+|++++++....++....+++|++++.++++|.
T Consensus 24 tNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKN 102 (309)
T COG5070 24 TNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKN 102 (309)
T ss_pred hhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhcc
Confidence 79999999999999999999999998876664433322233 45678899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHH
Q 021258 82 AKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLF 161 (315)
Q Consensus 82 ~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~ 161 (315)
...+.++..+.++++.|.+.....+.++++..-....++|.+ ........-..|++++...++..+.+....++-.
T Consensus 103 ltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q----~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri 178 (309)
T COG5070 103 LTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ----ASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRI 178 (309)
T ss_pred ceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh----HHHHHhcccCCceEEEehhhHhHHHHHHHHHHhh
Confidence 999999999999999999999999999999998877776431 1110012334688888888887777665444433
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhh-hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHH
Q 021258 162 KGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFV-YHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIM 240 (315)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~ 240 (315)
|-.+....+.|+|.+..+.++++...+...|+... +.. ...+.....++..++|+....++--++.+.+++++.|+++
T Consensus 179 ~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvG 257 (309)
T COG5070 179 KLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVG 257 (309)
T ss_pred cccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHH
Confidence 32234457899999999998887765554443221 111 1234455566677888877778888899999999999999
Q ss_pred HHHHHHHHHHHHHHccCCCcchhhhhHHHHHH-HHHhhhhhccccC
Q 021258 241 TTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG-ALYTRSFFKKVSE 285 (315)
Q Consensus 241 ~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~-gv~~~~~~k~~~~ 285 (315)
.+++.-..+-|.++|||+.+...+..+.+-.. |++| .+.|.+|+
T Consensus 258 ALNKlp~alaGlvffdap~nf~si~sillGflsg~iY-avaks~k~ 302 (309)
T COG5070 258 ALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY-AVAKSKKQ 302 (309)
T ss_pred HhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999764 5444 44554443
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.85 E-value=1.4e-19 Score=163.67 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCCC-CCCchhhHH-HHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHH
Q 021258 19 VFCNRLMTSAVSAGTLIAS--RKAID-PVAPVYKYC-LVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLI 94 (315)
Q Consensus 19 t~~q~l~~~l~~~~~~~~~--~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~ 94 (315)
++.+.....+...+...++ ++..+ +++.++..+ ..++.......+.+.|+++.+.+....+.++.|++++++++++
T Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~ 110 (281)
T TIGR03340 31 LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence 4556555655555554433 21111 122333343 3444567778899999999999999899999999999999999
Q ss_pred hccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChH-HHHH
Q 021258 95 MQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIH-NQIF 173 (315)
Q Consensus 95 ~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~-~~~~ 173 (315)
+|||+++++|+++.++++|+.++..++ + ...+..|+.+.+.++++++++.+..|+..++. ++. ....
T Consensus 111 ~~e~~~~~~~~g~~~~~~Gv~ll~~~~---~-------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~--~~~~~~~~ 178 (281)
T TIGR03340 111 LGETLSPLAWLGILIITLGLLVLGLSR---F-------AQHRRKAYAWALAAALGTAIYSLSDKAAALGV--PAFYSALG 178 (281)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccc---c-------cccchhHHHHHHHHHHHHHHhhhhccccccch--hcccccHH
Confidence 999999999999999999998876431 1 11234678788899999999988766543222 221 1112
Q ss_pred HHHHHHHHHH-HHHHHH---hCchhHHhHhhhhChHHHHHHHHH-HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Q 021258 174 YTTLCSCVLS-LSGLIL---EGHLFLAIDFVYHHLDCFFDVALL-STVATTSQFFISYTIRTFGALTFATIMTTRQLVSI 248 (315)
Q Consensus 174 ~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ 248 (315)
+. .++.+.. .+.... .++. .. ...+..+..+++. ++++.+++.++++++++.++.+++...+++|+++.
T Consensus 179 ~~-~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~ 252 (281)
T TIGR03340 179 YL-GIGFLAMGWPFLLLYLKRHGR----SM-FPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAV 252 (281)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhcc----ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHH
Confidence 21 1222221 222111 1110 00 0111222233343 56677889999999999999999999999999999
Q ss_pred HHHHHHccCCCcchhhhhHHHHHHHHHh
Q 021258 249 VLSCVWFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 249 ils~l~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
++|++++||++++.+++|.++++.|+++
T Consensus 253 l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 253 VLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999864
No 21
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.5e-18 Score=155.80 Aligned_cols=275 Identities=15% Similarity=0.219 Sum_probs=201.7
Q ss_pred ccCCCCCcccc-hhHHHHHHHHHHHHHHHHHHHhhc----CCCCC---------CCchhhHHHHHHHHHHHHHHhhHhcc
Q 021258 4 PYGADNEYFKY-SLFLVFCNRLMTSAVSAGTLIASR----KAIDP---------VAPVYKYCLVSMSNILTTTCQYEALK 69 (315)
Q Consensus 4 ~~~~~~~~f~~-p~~lt~~q~l~~~l~~~~~~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~al~ 69 (315)
+|....++++| |...+++-.++..++|...+++.. ++..+ +++..+....++++++.+-+.+.++.
T Consensus 35 ~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~ 114 (345)
T KOG2234|consen 35 RYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALS 114 (345)
T ss_pred HHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 44445554444 888889989999999887665442 11110 11233456778899999999999999
Q ss_pred cCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCC-CCCCCchhhHHHHHHHHHH
Q 021258 70 YVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPY-SKGRENTVWGVSLMVGYLG 148 (315)
Q Consensus 70 ~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~s~~ 148 (315)
+++.+++++....+.+.|++++.++++||.+++||.++++.+.|+.+....... +..+. .....+.+.|...++.+++
T Consensus 115 ~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~-~~~a~~~~~~~n~~~G~~avl~~c~ 193 (345)
T KOG2234|consen 115 NLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS-PTGAKSESSAQNPFLGLVAVLVACF 193 (345)
T ss_pred cCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC-CCCccCCCcccchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988732111 11111 1124678899999999999
Q ss_pred hhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhC-chhHHhHhhh-hChHHHHHHHHHHHHHHHHHHHHHH
Q 021258 149 FDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEG-HLFLAIDFVY-HHLDCFFDVALLSTVATTSQFFISY 226 (315)
Q Consensus 149 ~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 226 (315)
++++..++.||++|+.+.+.+........++.++.+......+ +-....++.+ ++...|..++. .+++.++...
T Consensus 194 ~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~----~a~gGLlvs~ 269 (345)
T KOG2234|consen 194 LSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL----NAVGGLLVSL 269 (345)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH----HhccchhHHH
Confidence 9999999999999987766666666666777777766544432 2110112222 22333433333 3444455666
Q ss_pred HHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccc
Q 021258 227 TIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 283 (315)
Q Consensus 227 ~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~ 283 (315)
.+|+.+-..-.-...+..+++.+.|+.+||-++|.....|..+|+.++.++...+.+
T Consensus 270 v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 270 VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 778888888888888888999999999999999999999999999999888744443
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=5.2e-18 Score=152.93 Aligned_cols=248 Identities=18% Similarity=0.176 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCchhhHHH-HHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRK-AIDPVAPVYKYCL-VSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGT 92 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~ 92 (315)
+....+.|.+.+.+........++. +.+...+++..+. .++.......+.+.++++++.+.++++.++.|+++.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 4455555887777763333222211 2222223333444 4445677789999999999999999999999999999997
Q ss_pred -HHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHH
Q 021258 93 -LIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQ 171 (315)
Q Consensus 93 -l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~ 171 (315)
+++|||++++++.++++.++|+.++...+.. + .+. ...|+.+.+.+.++++++.+..|++. +.++...
T Consensus 116 ~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~------~-~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~ 184 (292)
T COG0697 116 LLLLGERLSLLQILGILLALAGVLLILLGGGG------G-GIL-SLLGLLLALAAALLWALYTALVKRLS---RLGPVTL 184 (292)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHheecCCCc------c-hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHH
Confidence 6679999999999999999999988754210 0 011 57899999999999999999998876 3344444
Q ss_pred HH-HHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHH-HHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q 021258 172 IF-YTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT-TSQFFISYTIRTFGALTFATIMTTRQLVSIV 249 (315)
Q Consensus 172 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~a~~~si~~~l~~v~~~i 249 (315)
.. +..........+.. .. +. + .......+..+.+.++++. +++.++++++++.++...++..+++|+++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~-~~-~~----~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 257 (292)
T COG0697 185 ALLLQLLLALLLLLLFF-LS-GF----G-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAAL 257 (292)
T ss_pred HHHHHHHHHHHHHHHHH-hc-cc----c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 44 22221111111111 11 10 0 1123344556666666544 6899999999999999999999999999999
Q ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhh
Q 021258 250 LSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 280 (315)
Q Consensus 250 ls~l~f~e~~t~~~~iG~~lvl~gv~~~~~~ 280 (315)
+++++++|+++..+++|..+++.|+.+...+
T Consensus 258 ~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 258 LGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998887765
No 23
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.84 E-value=5.1e-22 Score=170.26 Aligned_cols=265 Identities=15% Similarity=0.138 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAI-DPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL 93 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l 93 (315)
|..+.-.|+++-.++.++-+.+++... -++-..+..+++|+..+.+..+.|+|++|++.+.++++..++|.+|.++++.
T Consensus 64 p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~ 143 (346)
T KOG4510|consen 64 PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWA 143 (346)
T ss_pred hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHH
Confidence 445555555555544444333333211 1222333456899999999999999999999999999999999999999999
Q ss_pred HhccccChhhHHHHHHHHHhHHHHhcCCC--CCCCCCCC-CCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHH
Q 021258 94 IMQKRYKGYDYFLALLVTLGCSIFILFPS--GADLSPYS-KGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHN 170 (315)
Q Consensus 94 ~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~--~~~~~~~~-~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~ 170 (315)
++|||+++.+.++....+.||+++...+- +++.++.+ ++.+.+.+|-...+.+.+.-+...+..+++-|+ .+..-
T Consensus 144 ~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~--~h~~m 221 (346)
T KOG4510|consen 144 FLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKN--AHAIM 221 (346)
T ss_pred HHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcc--ccEEE
Confidence 99999999999999999999998876432 11111111 112556778777777777766666777777554 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Q 021258 171 QIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVL 250 (315)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~il 250 (315)
.+-|+...+++..+..+..-|++. . .+..+.|+..+-+|+++.++|++.+.++|+-.|...++..+...+++.++
T Consensus 222 svsyf~~i~lV~s~I~~~~ig~~~----l-P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~w 296 (346)
T KOG4510|consen 222 SVSYFSLITLVVSLIGCASIGAVQ----L-PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFW 296 (346)
T ss_pred EehHHHHHHHHHHHHHHhhcccee----c-CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHH
Confidence 677888888887776654444321 1 23344555566679999999999999999999999999999999999999
Q ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccCC
Q 021258 251 SCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEK 286 (315)
Q Consensus 251 s~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~~ 286 (315)
-+++|+|.+++++|+|+++++++.+.....|..+++
T Consensus 297 qv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~~~ 332 (346)
T KOG4510|consen 297 QVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAGTN 332 (346)
T ss_pred HHHHhcCCChHHHhhceeeeehhHHHHHHHHHhccc
Confidence 999999999999999999999988887766655544
No 24
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-21 Score=168.61 Aligned_cols=277 Identities=15% Similarity=0.140 Sum_probs=218.8
Q ss_pred cccCCCC--CcccchhHHHHHHHHHHHHHHHHHHHhhcC-----CCC-CCCc---hhhHHHHHHHHHHHHHHhhHhcccC
Q 021258 3 VPYGADN--EYFKYSLFLVFCNRLMTSAVSAGTLIASRK-----AID-PVAP---VYKYCLVSMSNILTTTCQYEALKYV 71 (315)
Q Consensus 3 ~~~~~~~--~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~-----~~~-~~~~---~~~~~~~~~~~~~~~~l~~~al~~v 71 (315)
|+|-.+. ...+.|.++++.|+++...++...-...++ ..+ .+.+ .++.++.++.+.+++..+|+.++|+
T Consensus 47 nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yV 126 (347)
T KOG1442|consen 47 NKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYV 126 (347)
T ss_pred HHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhc
Confidence 3444444 677889999999999999888765443221 111 1111 2456788999999999999999999
Q ss_pred chHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhh
Q 021258 72 SFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDG 151 (315)
Q Consensus 72 ~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a 151 (315)
+++.+-+-|+...+|+.+++++++|+|-+..-..+..++++|--+ . . |.++. .+..++.|.++...|.++-|
T Consensus 127 gVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-G-v----dqE~~--~~~ls~~GvifGVlaSl~vA 198 (347)
T KOG1442|consen 127 GVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-G-V----DQEGS--TGTLSWIGVIFGVLASLAVA 198 (347)
T ss_pred ceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-c-c----ccccc--cCccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888888432 1 1 22221 24788999999999999999
Q ss_pred hhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021258 152 FTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYH-HLDCFFDVALLSTVATTSQFFISYTIRT 230 (315)
Q Consensus 152 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (315)
+..++.+|.....+...+.+..|++..++++++|.+.+.||+.+-+++.+. +.+.|..+.+.|++++.-++.-..-+|.
T Consensus 199 lnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~ 278 (347)
T KOG1442|consen 199 LNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKV 278 (347)
T ss_pred HHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEe
Confidence 999998877665555678999999999999999999999998776665433 3456666555566665555444455899
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccCCC
Q 021258 231 FGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSEKP 287 (315)
Q Consensus 231 ~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~~~ 287 (315)
+||.+.++-++.|.....++++.+++|.-+..-|-|-++++.|-..+.+-|+.+.+|
T Consensus 279 TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 279 TSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred cccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888887777655433
No 25
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.82 E-value=5.8e-18 Score=151.05 Aligned_cols=218 Identities=8% Similarity=0.005 Sum_probs=152.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCC------CCC--CCc-hhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcch
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKA------IDP--VAP-VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKM 84 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~------~~~--~~~-~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p 84 (315)
.|..++++|++++.++..+++..++++ .++ +++ +..+...|++......+.++|+++++.+.++++.++.|
T Consensus 28 ~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~P 107 (256)
T TIGR00688 28 PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINP 107 (256)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 589999999999988766655333221 111 111 11234567777888899999999999999999999999
Q ss_pred HHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccC
Q 021258 85 IPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGY 164 (315)
Q Consensus 85 ~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~ 164 (315)
+++++++++++|||++++++++++++++|+.++...+ .+.. .+.+.++++++.+.+..|+..++
T Consensus 108 i~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-----------~~~~----~~~l~aa~~~a~~~i~~~~~~~~- 171 (256)
T TIGR00688 108 LVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-----------GSLP----WEALVLAFSFTAYGLIRKALKNT- 171 (256)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-----------CCch----HHHHHHHHHHHHHHHHHhhcCCC-
Confidence 9999999999999999999999999999998775421 0111 24567889999999888876432
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhCh-HHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Q 021258 165 DMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHL-DCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTR 243 (315)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~ 243 (315)
+..+.... .....+...+.....+.. . .+ ..++ ..|..+++.++++.+++.++.+++|+.+|.++++..+++
T Consensus 172 --~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~ 244 (256)
T TIGR00688 172 --DLAGFCLE-TLSLMPVAIYYLLQTDFA-T-VQ--QTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIG 244 (256)
T ss_pred --CcchHHHH-HHHHHHHHHHHHHHhccC-c-cc--ccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22222221 122222222211111110 0 00 1122 256666777778889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 021258 244 QLVSIVLSCVW 254 (315)
Q Consensus 244 ~v~~~ils~l~ 254 (315)
|+++.++++++
T Consensus 245 Pv~~~~~~~~~ 255 (256)
T TIGR00688 245 PTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.81 E-value=4e-18 Score=150.35 Aligned_cols=223 Identities=16% Similarity=0.263 Sum_probs=172.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCC
Q 021258 44 VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSG 123 (315)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~ 123 (315)
+++..++.+.++++.+.+.+.+.++++++++++.+++.++.++|++++++++|||.+++||.++.+.++|+++....+..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999987765432
Q ss_pred CCCC-CCCC-----CCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHh-CchhHH
Q 021258 124 ADLS-PYSK-----GRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILE-GHLFLA 196 (315)
Q Consensus 124 ~~~~-~~~~-----~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 196 (315)
++.. ++.. .......|+++++.++++.|+..++.||++|+.+.+.+........++.++.++..... ++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~ 173 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISE 173 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 2100 0000 12346799999999999999999999999998776666666677777777776654332 211111
Q ss_pred hHhh-hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHH
Q 021258 197 IDFV-YHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIV 270 (315)
Q Consensus 197 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lv 270 (315)
..++ ..++..|. ..+..+++.+.....+|+.+...-+....+..+++.++++++||.+++....+|..+|
T Consensus 174 ~g~f~G~~~~~~~----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 174 SGFFHGYSWWVWI----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred CCchhhcchHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 1111 12222232 2234455666777889999999999999999999999999999999999999998764
No 27
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.78 E-value=3.8e-17 Score=141.33 Aligned_cols=266 Identities=15% Similarity=0.108 Sum_probs=195.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCchhh--HHHHHHHHHHHHHHhhHhcccCchH
Q 021258 10 EYFKYSLFLVFCNRLMTSAVSAGTLIASRKAI-------------DPVAPVYK--YCLVSMSNILTTTCQYEALKYVSFP 74 (315)
Q Consensus 10 ~~f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~~~l~~~al~~v~~~ 74 (315)
..|++|..-+.+.++--++++..+..+|++.. +.+.|++. +++.+++...+..+.|.++.+++.+
T Consensus 34 pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsAS 113 (372)
T KOG3912|consen 34 PGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSAS 113 (372)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHH
Confidence 34999988887777766666665555443210 11224443 4578999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhH
Q 021258 75 VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTS 154 (315)
Q Consensus 75 ~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~ 154 (315)
.+.++|-...+||.+++..+++++++.+||+++..+..|++++...|-+.+..+.+ .-..-..|.++.+++.++-|...
T Consensus 114 sfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~-d~s~iitGdllIiiaqiivaiQ~ 192 (372)
T KOG3912|consen 114 SFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYT-DYSSIITGDLLIIIAQIIVAIQM 192 (372)
T ss_pred HHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcc-ccccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887664432211111 01455789999999999999999
Q ss_pred HHHHHHHccCCCChHHHHHHHHHHHHHHHHHH-H---HH-hCc------------hhHHhHhhhhChHHHHHHHHHHH--
Q 021258 155 TFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSG-L---IL-EGH------------LFLAIDFVYHHLDCFFDVALLST-- 215 (315)
Q Consensus 155 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~------------~~~~~~~~~~~~~~~~~l~~~~~-- 215 (315)
+..||.+++++.+|.+...|...++.+++... . .+ .++ +...+.-.+..|... +...+.
T Consensus 193 v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~--val~~~~v 270 (372)
T KOG3912|consen 193 VCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLA--VALIGFTV 270 (372)
T ss_pred HHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhH--HHHhhhhh
Confidence 99999999999999999999999986554222 1 11 121 111111112223221 222222
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 216 VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
..++-++.-.+..|..|+++-.+...++..+..+++....-|.+...|+.|.++.+.|+.+++
T Consensus 271 SiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 271 SIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred heeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223344456899999999999999999999999999999999999999999988876654
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.72 E-value=2.7e-15 Score=136.24 Aligned_cols=239 Identities=9% Similarity=0.065 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCchhhHH----HHHHHHHHHHHHhhHhcccCchHHHHHHhh-cchHHHHHHHHHHhc
Q 021258 22 NRLMTSAVSAGTLIASRKAIDPVAPVYKYC----LVSMSNILTTTCQYEALKYVSFPVQTLAKC-AKMIPVMIWGTLIMQ 96 (315)
Q Consensus 22 q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~al~~v~~~~~~~l~~-~~p~~~~ll~~l~~~ 96 (315)
++.++.++...+....+.. + .+.+..+ .-|++...++.+.+.|.++++.+.++.+.+ ..+++..+.+.+++|
T Consensus 33 ~~~~g~l~~~~~~~~~~~~--~-~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~ 109 (290)
T TIGR00776 33 GTTFGALILSIAIAIFVLP--E-FWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFG 109 (290)
T ss_pred HHHHHHHHHHHHHHHHhCC--c-ccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 5666666655443333321 1 1222332 345557788899999999999998877777 777788899999999
Q ss_pred cccChhh----HHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHH
Q 021258 97 KRYKGYD----YFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQI 172 (315)
Q Consensus 97 ~~~~~~~----~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~ 172 (315)
|+.++++ +++++++++|+.++...+. + +.+.++..+...|+++.+++.++|+++.+..|+. +.++.+..
T Consensus 110 e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~--~-~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~ 182 (290)
T TIGR00776 110 EWSTSIQTLLGLLALILIIIGVYLTSRSKD--K-SAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVL 182 (290)
T ss_pred hccchHHHHHHHHHHHHHHHhHheEEeccc--c-ccccccccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceeh
Confidence 9999999 9999999999988765421 1 1100000233679999999999999998887654 24566664
Q ss_pred HHHHH----HHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhChHHHHHHHHHHHHHH
Q 021258 173 FYTTL----CSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIR-TFGALTFATIMTTRQLVS 247 (315)
Q Consensus 173 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~a~~~si~~~l~~v~~ 247 (315)
+.+.. .+.++..+. ... + +. .+...+..++ .++...+++.+++.+.+ +.++.++++..+++|+.+
T Consensus 183 ~~~~~g~~~~~~~~~~~~---~~~--~--~~--~~~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia 252 (290)
T TIGR00776 183 LPQAIGMVIGGIIFNLGH---ILA--K--PL--KKYAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIIS 252 (290)
T ss_pred hHHHHHHHHHHHHHHHHH---hcc--c--ch--HHHHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHH
Confidence 44333 222222222 000 0 00 1112333333 66667788888888888 999999999999999999
Q ss_pred HHHHHHHccCCCcchhh----hhHHHHHHHHHhhhhh
Q 021258 248 IVLSCVWFRHPLSWEQC----IGSIIVFGALYTRSFF 280 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~----iG~~lvl~gv~~~~~~ 280 (315)
.++++++++|..++.++ +|.+++++|+.+....
T Consensus 253 ~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 253 TLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999 9999999988776543
No 29
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.71 E-value=7.7e-17 Score=144.75 Aligned_cols=230 Identities=13% Similarity=0.055 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCC
Q 021258 51 CLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYS 130 (315)
Q Consensus 51 ~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~ 130 (315)
+..+.+.+++++..|.||.|.+++..+++.+++-+||..++.++..+|+++.+.+++.+.+.|++++...|++. . ++
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-~--~~ 239 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-N--SD 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-c--cc
Confidence 45667789999999999999999999999999999999999999999999999999999999999988775421 1 11
Q ss_pred CCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccC--CCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHH
Q 021258 131 KGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGY--DMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFF 208 (315)
Q Consensus 131 ~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (315)
..+.....|.++.++++++||+|.++.||-..+. +.|.....-|..++..++++|.+++-... ..-.|...+.....
T Consensus 240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~~~q~~ 318 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPSSTQFS 318 (416)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCCCceeE
Confidence 1245668999999999999999999988876655 35555555577778888888765432211 10111111111222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 209 DVALL-STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 209 ~l~~~-~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
.++.. .+.+.++-++|..+.-.++|..+++..++....+++...++-+.++++.+++|.+.|++|.++.++..+..
T Consensus 319 ~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 319 LVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred eeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 33343 44567788999999999999999999999999999999999999999999999999999988887665433
No 30
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.1e-17 Score=142.81 Aligned_cols=252 Identities=16% Similarity=0.167 Sum_probs=189.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHH
Q 021258 12 FKYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWG 91 (315)
Q Consensus 12 f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~ 91 (315)
-+.|..-+|+.+..-+++-..++.+|++. .+..|+.|++.++...-++++--.|+||++....+++.+-....+++++
T Consensus 45 iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~--~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~ls 122 (336)
T KOG2766|consen 45 INAPTSQTFLNYVLLALVYGPIMLFRRKY--IKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLS 122 (336)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHhhhHH--HHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHH
Confidence 55688889988766666656666666632 2345677899999988889888999999999888888888877899999
Q ss_pred HHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHH
Q 021258 92 TLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQ 171 (315)
Q Consensus 92 ~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~ 171 (315)
|+++|.|+++.++.|++++++|+.+++++|-+. .+.+++.+-..|.++++.++-+||..++.+|.+.|+ .+..+.
T Consensus 123 w~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a---gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn--~d~~el 197 (336)
T KOG2766|consen 123 WFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA---GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN--ADRVEL 197 (336)
T ss_pred HHHHHHHHhhheeeeEEeEecceEEEEEeeecc---ccccCCCCCccCcEEEEecceeeeeccccHHHHHhc--CcHHHH
Confidence 999999999999999999999999988875421 111234566789999999999999999999998875 578899
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHH--HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q 021258 172 IFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLS--TVATTSQFFISYTIRTFGALTFATIMTTRQLVSIV 249 (315)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~i 249 (315)
|....++++++..+-...+-...... +.+ +....+++ ++-++-.-+.-..+|..|++..++-.......+++
T Consensus 198 m~~lgLfGaIIsaIQ~i~~~~~~~tl---~w~---~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~ 271 (336)
T KOG2766|consen 198 MGFLGLFGAIISAIQFIFERHHVSTL---HWD---SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLL 271 (336)
T ss_pred HHHHHHHHHHHHHHHHhhhccceeeE---eeh---HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHH
Confidence 99999999998877644432211111 111 21122222 12222222333467889999888888888888888
Q ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 250 LSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 250 ls~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+ ..||-+++|...+..+.+..|..++.
T Consensus 272 i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 272 I--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred H--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 8 78899999999999999999987774
No 31
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.66 E-value=1.5e-13 Score=120.45 Aligned_cols=249 Identities=12% Similarity=0.067 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC---C-CCCchh--hHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAI---D-PVAPVY--KYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVM 88 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~---~-~~~~~~--~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ 88 (315)
+..+..-|.+-+..+....+...|+.. + .++|.+ .+...+++.+.+....-+|.+.=..-.+.+-.+..|++.+
T Consensus 34 ~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~V 113 (293)
T COG2962 34 ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNV 113 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHH
Confidence 445666676666655554444333211 1 122221 2234455566667777788887544456677888899999
Q ss_pred HHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCCh
Q 021258 89 IWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEI 168 (315)
Q Consensus 89 ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~ 168 (315)
+++.+++|||+++.||+++++..+||..-.+.. ++..+....++ +.+++|....|+ .+.++
T Consensus 114 llG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-----------g~lpwval~la----~sf~~Ygl~RK~----~~v~a 174 (293)
T COG2962 114 LLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-----------GSLPWVALALA----LSFGLYGLLRKK----LKVDA 174 (293)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-----------CCCcHHHHHHH----HHHHHHHHHHHh----cCCch
Confidence 999999999999999999999999998877642 24556555544 466777755433 35566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Q 021258 169 HNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVY-HHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVS 247 (315)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~ 247 (315)
.+-++.-..+-++..+.+.+..++-.. +.. .++..+..++..|..+++.-.++..+-|+.+=++.++..|.+|..-
T Consensus 175 ~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~ 251 (293)
T COG2962 175 LTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLM 251 (293)
T ss_pred HHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 555555545444444444333222111 222 3445566667778889999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 248 IVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
.+++++++||+++..+++..+.+-.|+.++.++.-+++
T Consensus 252 fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 252 FLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888876655444
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.64 E-value=1.1e-14 Score=119.43 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHcc-----CCCChHHHHHHHHHHHHHHHHHHHHHhCchh--HHh-Hhhh----hChHH
Q 021258 139 GVSLMVGYLGFDGFTSTFQDKLFKG-----YDMEIHNQIFYTTLCSCVLSLSGLILEGHLF--LAI-DFVY----HHLDC 206 (315)
Q Consensus 139 G~~~~~~s~~~~a~~~v~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~----~~~~~ 206 (315)
|.++++.|.++.+++.++.|+.+++ .+.++.++++|.++.++++++|..++.++.. +.. +... .++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6889999999999999999999887 5789999999999999999888765544322 111 1111 02344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 207 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
+..++..++++.+.++..+..++++||.+.++++.+|.+..+++|+++|+|++|+.+++|+++.+.|.+.|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5555666778888899999999999999999999999999999999999999999999999999999888765
No 33
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.63 E-value=2.4e-13 Score=116.47 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLI 94 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~ 94 (315)
|.=.|++|..++.+++....+=.+++.. +.+++..+..|......+.+.|.|++.+|.+++..+..+.|+.+.+++
T Consensus 40 ~~g~t~lRl~~aaLIll~l~RPwr~r~~-~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~--- 115 (292)
T COG5006 40 AAGVTALRLAIAALILLALFRPWRRRLS-KPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS--- 115 (292)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHhccC-hhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh---
Confidence 5567999988888887655431222222 456667788999999999999999999999999999999999655433
Q ss_pred hccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHH
Q 021258 95 MQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFY 174 (315)
Q Consensus 95 ~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~ 174 (315)
.||..-..| +.+.+.|+.+..-.. ++..+.+..|..+.+.+..||++|-+..+|.-+. .+...-+.+
T Consensus 116 -sRr~~d~vw--vaLAvlGi~lL~p~~--------~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~ 182 (292)
T COG5006 116 -SRRLRDFVW--VALAVLGIWLLLPLG--------QSVWSLDPVGVALALGAGACWALYIVLGQRAGRA--EHGTAGVAV 182 (292)
T ss_pred -ccchhhHHH--HHHHHHHHHhheecc--------CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc--CCCchHHHH
Confidence 455444444 455666766553221 1124678899999999999999999988887532 233444556
Q ss_pred HHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHH-HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Q 021258 175 TTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTV-ATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCV 253 (315)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l 253 (315)
-..+++++.+|+...... ..+ .+|.....-+..+++ +.+-+.+-..++++.++.+.++...+||.++.+.|++
T Consensus 183 gm~vAaviv~Pig~~~ag----~~l--~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i 256 (292)
T COG5006 183 GMLVAALIVLPIGAAQAG----PAL--FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLI 256 (292)
T ss_pred HHHHHHHHHhhhhhhhcc----hhh--cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHH
Confidence 666777777776443221 111 344444333444444 4556667778999999999999999999999999999
Q ss_pred HccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 254 WFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 254 ~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
++||.+|+.||.|++.|+.+..=..+.-|
T Consensus 257 ~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 257 FLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999976553343333
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.61 E-value=9.1e-15 Score=127.73 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=142.2
Q ss_pred CchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCC-------------CCCCC---CCCCC
Q 021258 71 VSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGA-------------DLSPY---SKGRE 134 (315)
Q Consensus 71 v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~-------------~~~~~---~~~~~ 134 (315)
+++|.++.++++.++++++.++...++|++..|+++..+++.|+.....++.+. +.++. ....+
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 567889999999999999999999999999999999999999987544332100 00000 00124
Q ss_pred chhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHh-CchhHHhHhhhhChHHHHHHHHH
Q 021258 135 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILE-GHLFLAIDFVYHHLDCFFDVALL 213 (315)
Q Consensus 135 ~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 213 (315)
+.+.|..+.+.+++++++..+++|+..|+++...+...+....++.+......... ++......+....+... ...
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 158 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAV---WIV 158 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHH---HHH
Confidence 67889999999999999999999998766543333333333333333222221111 11111111111122221 223
Q ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHh
Q 021258 214 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
.+..+.++.+....+|+.|+.+.+.+..++++++.++|+++|||+++..+++|..+++.|+.+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 345667778889999999999999999999999999999999999999999999999988765
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.19 E-value=1e-10 Score=90.30 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHH
Q 021258 140 VSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATT 219 (315)
Q Consensus 140 ~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (315)
.++++++++++++..++.|.=.+ +.||....+--+.....++...++..|++...- ..+++.|..++..++.+..
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---~~~~k~~lflilSGla~gl 79 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG---EIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccc---ccCcceehhhhHHHHHHHH
Confidence 56778899999999888765454 356655566566666556556666666643210 1366778888888888999
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 220 SQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 220 ~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+-++|++++|.-.++....+.-..+++++++|++++||+++..+|+|++++..|.++..
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999998876544
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=3e-10 Score=89.19 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=96.5
Q ss_pred HhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHH-HHHHHHHHHH
Q 021258 148 GFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTV-ATTSQFFISY 226 (315)
Q Consensus 148 ~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 226 (315)
++||.+.++.|+..++ .++....++....+.+ .++......... ....+++.+...+..+.+ +.+++.++++
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 3678888888888775 6788999998888876 444433322211 112334445555555554 6788899999
Q ss_pred HHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 227 TIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 227 ~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
++++.++..++++.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.05 E-value=2e-09 Score=83.87 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-----CCCchhhHHHHHHHHH-HHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHH
Q 021258 20 FCNRLMTSAVSAGTLIASRKAID-----PVAPVYKYCLVSMSNI-LTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL 93 (315)
Q Consensus 20 ~~q~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l 93 (315)
.+|++.+.+....+...+++..+ ++++++..+..|++.. .+..+.++|+++.+ +....+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 46778888777766655543211 1344444556677765 78899999999999 57778899999999999999
Q ss_pred HhccccChhhHHHHHHHHHhHHHHhcCC
Q 021258 94 IMQKRYKGYDYFLALLVTLGCSIFILFP 121 (315)
Q Consensus 94 ~~~~~~~~~~~~~l~l~~~Gv~l~~~~~ 121 (315)
++|||++++++.+++++++|++++...|
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999988763
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.98 E-value=2.7e-07 Score=81.75 Aligned_cols=236 Identities=9% Similarity=0.067 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhhcCCCCC-CCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHH-hhcchHHHHHHHHHHhccccCh
Q 021258 24 LMTSAVSAGTLIASRKAIDP-VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKG 101 (315)
Q Consensus 24 l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l-~~~~p~~~~ll~~l~~~~~~~~ 101 (315)
+-+.++..+....+++..+. ...+..-++-|++...+....+.|++++.++..+=+ .....+.+.+++.++++|.-+.
T Consensus 21 ~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~ 100 (269)
T PF06800_consen 21 IGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT 100 (269)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc
Confidence 33444444444444443221 122222356678889999999999998654322111 1223455888999999998887
Q ss_pred hhHH----HHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHH
Q 021258 102 YDYF----LALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTL 177 (315)
Q Consensus 102 ~~~~----~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ 177 (315)
.+++ ++++.++|+.+.+..+.+++. .+++.+...|++.++.+.+.|..|.+..+- .+.+++...+-++.
T Consensus 101 ~~~~~G~~Al~liiiGv~lts~~~~~~~~---~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~lPqai 173 (269)
T PF06800_consen 101 TQKIIGFLALVLIIIGVILTSYQDKKSDK---SSSKSNMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFLPQAI 173 (269)
T ss_pred chHHHHHHHHHHHHHHHHHhccccccccc---cccccchhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHHHHHH
Confidence 7754 899999999998887543221 111356677999999999999888876433 24677766664433
Q ss_pred HHHHHH-HHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHcc
Q 021258 178 CSCVLS-LSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFR 256 (315)
Q Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~ 256 (315)
+.++. ..+.....+ . ..+...|.. +.-++.=.++++++..+.++.+..+.=.++.+..+++.+.|.++++
T Consensus 174 -Gm~i~a~i~~~~~~~-----~--~~~k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~ 244 (269)
T PF06800_consen 174 -GMLIGAFIFNLFSKK-----P--FFEKKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILK 244 (269)
T ss_pred -HHHHHHHHHhhcccc-----c--ccccchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEE
Confidence 33332 222222211 0 112233433 2335555678888888999999999999999999999999999999
Q ss_pred CCCcch----hhhhHHHHHHHHH
Q 021258 257 HPLSWE----QCIGSIIVFGALY 275 (315)
Q Consensus 257 e~~t~~----~~iG~~lvl~gv~ 275 (315)
|.=+.. .++|.++++.|.+
T Consensus 245 E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 245 EKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred ecCchhhHHHHHHHHHHHHHhhh
Confidence 988866 4468887776644
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.93 E-value=8.7e-08 Score=87.35 Aligned_cols=140 Identities=11% Similarity=0.119 Sum_probs=104.9
Q ss_pred CchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHH
Q 021258 134 ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALL 213 (315)
Q Consensus 134 ~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (315)
.+...|.++.++++++|+...+..|.. . +.++.++.++...++.++.++.....++....... ..+++.+...+..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL-IQTPQKIFMLAVS 79 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-HcCHHHHHHHHHH
Confidence 355679999999999999999888653 3 47899999999999888776665444332111010 1122222222222
Q ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 214 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
+++....+.++++++++.++..++++.++.|++..++++++++|+++..+++|.++.+.|+.+.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3344556788999999999999999999999999999999999999999999999998887654
No 40
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.93 E-value=7.4e-08 Score=85.86 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHH-hHhhhhCh-HHHHHHHHHHH
Q 021258 138 WGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLA-IDFVYHHL-DCFFDVALLST 215 (315)
Q Consensus 138 ~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~~~ 215 (315)
.|+++.++++++++...+..|.+ . +.++.++.++-+.++++++++.....++.... .+...... +.+..+...++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 37889999999999999888763 3 47899999999999987776654443321110 01100111 11223344455
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 216 VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
+....+.+++.++++.++.+++++.++.|+++.++++++++|+++..+++|.++.++|+.+.
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 56667788999999999999999999999999999999999999999999999999887644
No 41
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.88 E-value=1.6e-08 Score=79.32 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCchhhHHHHHHH-HHHHHHHhhHhcccCchHHHHHHhhcchHHHHH
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKA---IDPVAPVYKYCLVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMI 89 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~l 89 (315)
.|...+++|++.+.+ ..+.....+++ ...++.+...+..+++ ...+..+.+.++++++++...++..+.|+++++
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i 96 (126)
T PF00892_consen 18 SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAI 96 (126)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 488999999999986 44333333221 1122333344566666 578889999999999999999999999999999
Q ss_pred HHHHHhccccChhhHHHHHHHHHhHHHHh
Q 021258 90 WGTLIMQKRYKGYDYFLALLVTLGCSIFI 118 (315)
Q Consensus 90 l~~l~~~~~~~~~~~~~l~l~~~Gv~l~~ 118 (315)
++++++||+++++++.+++++++|+.++.
T Consensus 97 ~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 97 LGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.84 E-value=8.3e-09 Score=85.67 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCC
Q 021258 51 CLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYS 130 (315)
Q Consensus 51 ~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~ 130 (315)
.+.+++..+.++++..|++.++.+.++-+.+|.-.++.++++.+++.|+...+++++++.+.|+.++.+.|.
T Consensus 57 aPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-------- 128 (290)
T KOG4314|consen 57 APFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-------- 128 (290)
T ss_pred cceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc--------
Confidence 466778888999999999999999999999999999999999999999999999999999999998877631
Q ss_pred CCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCC-ChHHHHHHHHHHHHHH-HHHH--HHHhCchhHHhHhhhhChHH
Q 021258 131 KGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDM-EIHNQIFYTTLCSCVL-SLSG--LILEGHLFLAIDFVYHHLDC 206 (315)
Q Consensus 131 ~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 206 (315)
+..+.+.|+.++.+|++..++|-+..|+...+-+. +....|--..++...+ ..|. +.+++- |.++.....|
T Consensus 129 -~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V--E~~qsFA~~P-- 203 (290)
T KOG4314|consen 129 -EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV--EHLQSFAAAP-- 203 (290)
T ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch--HHHHHHhhCC--
Confidence 24789999999999999999998888877654332 1222222112222211 1222 122221 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 207 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
|..+...+....--++.+..++..+.|...|+-..+.......+..++-+-..+.....|..++..|..+-..+.+
T Consensus 204 WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 204 WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 3332222222222233444566777888888777777777777777766667888899999999999776655444
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.72 E-value=3.6e-07 Score=82.65 Aligned_cols=133 Identities=9% Similarity=0.008 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHH
Q 021258 140 VSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATT 219 (315)
Q Consensus 140 ~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (315)
.++.+.++++++...+..|+..++ + ++ ..++....+++...|........ ..+.....+.+..++..++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~-~~--~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-E-PD--FLWWALLAHSVLLTPYGLWYLAQ---VGWSRLPATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-h-hH--HHHHHHHHHHHHHHHHHHHhccc---CCCCCcchhhHHHHHHHHHHHHH
Confidence 456778889999998888766544 1 22 34555566666666654332100 01111112223333344555667
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 220 SQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 220 ~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
.+.+.+.++++.++..++++.+..|+++.++++++++|+++..+++|.+++++|+.+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999999999999999999999999999999999999999876553
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.62 E-value=1.3e-07 Score=73.29 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=82.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCCCCC----CCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHH
Q 021258 13 KYSLFLVFCNRLMTSAVSAGTLIASRKAIDP----VAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVM 88 (315)
Q Consensus 13 ~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ 88 (315)
.+|.+-|++|.++..+++...+...++.... ++.|.-..+-|+...++..+.|.|++.=+.+...=+..++|+++.
T Consensus 29 vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~ 108 (140)
T COG2510 29 VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAV 108 (140)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHH
Confidence 4689999999999998888777665543221 233322335566678888999999998666554556778899999
Q ss_pred HHHHHHhccccChhhHHHHHHHHHhHHHHh
Q 021258 89 IWGTLIMQKRYKGYDYFLALLVTLGCSIFI 118 (315)
Q Consensus 89 ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~ 118 (315)
++++++++||+|..+|+|++++++|+++.+
T Consensus 109 lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 109 LLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999987754
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.61 E-value=1.1e-07 Score=86.46 Aligned_cols=222 Identities=14% Similarity=0.206 Sum_probs=121.2
Q ss_pred HHHHH-HHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCC
Q 021258 52 LVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYS 130 (315)
Q Consensus 52 ~~~~~-~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~ 130 (315)
+.|+. +.++..+++.|+.+.|.+..+=+.+...++.++++..++|||++++++.|..+++.|++++....++++.....
T Consensus 54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~ 133 (300)
T PF05653_consen 54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTL 133 (300)
T ss_pred HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCH
Confidence 45554 56778899999999999888777889999999999999999999999999999999988766543321110000
Q ss_pred CC-----CCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchh----HHh--Hh
Q 021258 131 KG-----RENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLF----LAI--DF 199 (315)
Q Consensus 131 ~~-----~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~ 199 (315)
++ ......-++.......+ .+.-...+|++.+ .++.|....+.+-. ...+...... +.. +.
T Consensus 134 ~~l~~~~~~~~fl~y~~~~~~~~~-----~L~~~~~~r~g~~--~i~vyi~i~sl~Gs-~tvl~~K~i~~~i~~~~~g~~ 205 (300)
T PF05653_consen 134 DELIALLSQPGFLVYFILVLVLIL-----ILIFFIKPRYGRR--NILVYISICSLIGS-FTVLSAKAISILIKLTFSGDN 205 (300)
T ss_pred HHHHHHhcCcceehhHHHHHHHHH-----HHHHhhcchhccc--ceEEEEEEeccccc-hhhhHHHHHHHHHHHHhcCch
Confidence 00 00111112212111111 1111111222211 12223222221110 0000000000 000 00
Q ss_pred hhhChHHHHHHHHHHHHHHHHH-HHHHHHHhhhChHHHHHHH-HHHHHHHHHHHHHHccC--CCcchh----hhhHHHHH
Q 021258 200 VYHHLDCFFDVALLSTVATTSQ-FFISYTIRTFGALTFATIM-TTRQLVSIVLSCVWFRH--PLSWEQ----CIGSIIVF 271 (315)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~a~~~si~~-~l~~v~~~ils~l~f~e--~~t~~~----~iG~~lvl 271 (315)
.-.++..|..++.+ +.+.+.| .+...++++.+++....+. ..-...+++-|.++|+| ..++.+ ..|..+++
T Consensus 206 ~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 206 QFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 01234445433333 4456666 4557799999998755444 44556677777888887 455544 45666677
Q ss_pred HHHHhhhhhcc
Q 021258 272 GALYTRSFFKK 282 (315)
Q Consensus 272 ~gv~~~~~~k~ 282 (315)
.|+.+-...|+
T Consensus 285 ~GV~lL~~~~~ 295 (300)
T PF05653_consen 285 IGVFLLSSSKD 295 (300)
T ss_pred HhhheeeccCc
Confidence 88887664444
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.52 E-value=3.9e-06 Score=78.41 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHH
Q 021258 138 WGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVA 217 (315)
Q Consensus 138 ~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (315)
.-++.++.-.++|+...++.|..++ .++++....+|-..++.++++++....... ......+.+.+..+...++++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~---~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRS---RSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHh---cccCcchHHHHHHHHHHHHHH
Confidence 3455566667788888888888774 478999999999999888887765432110 000001122344455566666
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHH------ccCCCcchhhhhHHHHHHHHHhhhhhc
Q 021258 218 TTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVW------FRHPLSWEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 218 ~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~------f~e~~t~~~~iG~~lvl~gv~~~~~~k 281 (315)
.+.+.+++.++++++|..++++.++.|+++.++++++ ++|+++..+++|+++.++|+.+....+
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 4455677889999999999999999999999999999 699999999999999999987655433
No 47
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.44 E-value=9.3e-06 Score=63.09 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHH-HHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHc
Q 021258 177 LCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT-TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWF 255 (315)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f 255 (315)
.++.+.........++..+........+ +...+..++++. ..+.+++.+.++.++ .++++..+.|+++.+++.+++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~ 82 (113)
T PF13536_consen 6 LFSVLFLLIILLIRGRLRDLFRALRRKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFF 82 (113)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554444444433222222222 222344455554 667788899999995 888999999999999999999
Q ss_pred cCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 256 RHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 256 ~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
+|+++..+++|.++++.|+.+..+..-
T Consensus 83 ~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 83 KERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999988776554
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.41 E-value=1.3e-05 Score=71.05 Aligned_cols=140 Identities=13% Similarity=0.114 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHH
Q 021258 136 TVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST 215 (315)
Q Consensus 136 ~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (315)
.-.|+++.+.+-+.||+...+.+-+. +.++.|+..+-..++.++.+.......+..+..+ ...+|+.+......+.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTAL 80 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHHH
Confidence 34689999999999999887775543 3578899999999998888776666555544333 3356665533322222
Q ss_pred HHHHHH-HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhh
Q 021258 216 VATTSQ-FFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 280 (315)
Q Consensus 216 ~~~~~~-~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~ 280 (315)
.. ..| ..+.++..+-....+|+-.+++|++.+++|.++++|+++..|++..++...|+....+.
T Consensus 81 li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 81 LI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 21 234 34556888889999999999999999999999999999999999999999998876654
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.35 E-value=2.7e-05 Score=61.91 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH--HccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 215 TVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCV--WFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l--~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
++..++.+++..++++.+.+.+..+..+.++...+.++. +|||++|+.+++|++++++|+++..+.++
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 356677889999999999999999999888888888885 89999999999999999999998775433
No 50
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.28 E-value=1.9e-05 Score=70.17 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 021258 151 GFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLST-VATTSQFFISYTIR 229 (315)
Q Consensus 151 a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 229 (315)
|...+..|...+. ..++.+..++....+.+++.+..... .+.+.+...+..+. +..+.+.+++.+++
T Consensus 2 g~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ 69 (260)
T TIGR00950 2 GTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR-----------PPLKRLLRLLLLGALQIGVFYVLYFVAVK 69 (260)
T ss_pred cchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc-----------cCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554443 46788888888888777766643221 11222323333433 44566778889999
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 230 TFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 230 ~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+.++..++++..+.|+++.+++.++++|++++.+++|+++.+.|+.+..
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 9999999999999999999999999999999999999999999877754
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.23 E-value=7e-05 Score=68.07 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=92.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHH-HHH
Q 021258 142 LMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVA-TTS 220 (315)
Q Consensus 142 ~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 220 (315)
..++-.++||...+..|.... +.+|.+.+++-..++.+++++.....+.- ....+.+......+.+. ...
T Consensus 12 ~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 12 ALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHP-------LPTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHHHHHHH
Confidence 345556778888888876654 57899999999999888877765443220 01122343334444443 344
Q ss_pred HHHHHHHH-hhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 221 QFFISYTI-RTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 221 ~~~~~~~~-~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+.+++.+. ++.++..++++.++.|+++.+++.+ ++|+++..+++|.++.+.|+.+..
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 55666676 9999999999999999999999985 799999999999999999987654
No 52
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.15 E-value=4.6e-05 Score=59.01 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=56.3
Q ss_pred HHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHh
Q 021258 56 SNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 118 (315)
Q Consensus 56 ~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~ 118 (315)
++.....+...+++.+|.+.+-.+-+..++++++++++++|||++++|++++.++++|++++.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466778889999999999877666779999999999999999999999999999999998764
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.11 E-value=0.00013 Score=66.67 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=85.4
Q ss_pred hHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 021258 153 TSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFG 232 (315)
Q Consensus 153 ~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 232 (315)
.++++|...++. ..|....+.....+.+...+... .+.. + ....+.+.+..++..+++..+.+.+.+.++++++
T Consensus 17 ~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 17 FNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS-SGLP-K---RLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH-hCCC-C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 446777777653 34677777766666554433311 1110 0 0011233455566677777667778889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 233 ALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 233 a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
++.++++..+.|+++.++++++++|+++..++.|.+++++|+.+.
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998654
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.09 E-value=0.00014 Score=66.41 Aligned_cols=123 Identities=11% Similarity=-0.018 Sum_probs=88.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHH
Q 021258 141 SLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTS 220 (315)
Q Consensus 141 ~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (315)
++.++++++||...+..|...+ +.+|....++-..++++..++... .. ... +..++..+++....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~~--~~--------~~~---~~~~~~~g~~~~~~ 71 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFVA--RP--------KVP---LNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhc--CC--------CCc---hHHHHHHHHHHHHH
Confidence 4567778899999888877664 478999999888876655444321 10 001 11222334433333
Q ss_pred H-HHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 221 Q-FFISYTIRT-FGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 221 ~-~~~~~~~~~-~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+ .+++.+.++ .++..++++.++.|+++.++++++++|+++..+++|.++.+.|+.+-.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 3 345667776 578899999999999999999999999999999999999999877655
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.07 E-value=0.00015 Score=67.76 Aligned_cols=134 Identities=7% Similarity=-0.010 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHccCCCC-hHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHH
Q 021258 140 VSLMVGYLGFDGFTSTFQDKLFKGYDME-IHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 218 (315)
Q Consensus 140 ~~~~~~s~~~~a~~~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (315)
..+++.--.+........|..++.. + |..+..+...++.++..+.... + ..+..++ ......+..++..+++..
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~-~-~~~~~~~-~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWAT-G-FRKIPRI-KSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHh-C-CCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 3333333334455566777777654 5 8888888888876654443221 1 1000001 001124555666777777
Q ss_pred HHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 219 TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 219 ~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
..+...+.++++.+++.++++..+.|+++.++++++++|+++..++.|.+++++|+.+..
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 666666788999999999999999999999999999999999999999999999987654
No 56
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.06 E-value=9.1e-05 Score=67.33 Aligned_cols=131 Identities=13% Similarity=0.024 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHH
Q 021258 139 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 218 (315)
Q Consensus 139 G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (315)
|++++++++++|+...+..|++. +.++.+.+. ..++.++........... . ...++.+..-+..++.=.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~~----~--~~~~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVLP----E--FWALSIFLVGLLSGAFWA 70 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhCC----c--ccccHHHHHHHHHHHHHH
Confidence 57888999999999988877653 444544442 333443333322221110 0 012333333333344456
Q ss_pred HHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHHHHccCCCcchh----hhhHHHHHHHHHhhhhh
Q 021258 219 TSQFFISYTIRTFGALTFATIMT-TRQLVSIVLSCVWFRHPLSWEQ----CIGSIIVFGALYTRSFF 280 (315)
Q Consensus 219 ~~~~~~~~~~~~~~a~~~si~~~-l~~v~~~ils~l~f~e~~t~~~----~iG~~lvl~gv~~~~~~ 280 (315)
.+|++++.++++.+.+.+-.+.+ +.++++.+++.++|+|..+..+ ++|.++++.|+.+....
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 78899999999999999988888 8888999999999999999999 99999999998876544
No 57
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.06 E-value=0.00015 Score=66.31 Aligned_cols=126 Identities=11% Similarity=0.038 Sum_probs=93.4
Q ss_pred hHHHHHHHHccCCCC--hHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021258 153 TSTFQDKLFKGYDME--IHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRT 230 (315)
Q Consensus 153 ~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (315)
+.+.||++.++...+ +..+.+.+....++...+.....+. . ......+...+..+++..++..+...++++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----P--KSRKIPLKKYAILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----c--CCCcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899998765444 6667776666666665554333320 0 011112333445567777777888899999
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 231 FGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 231 ~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
.+-.+..+.-..+++.+.++++++++++.+..++.+.+++.+|+.+....+.+++
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 9999999999999999999999999999999999999999999988887665444
No 58
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.03 E-value=0.00016 Score=65.91 Aligned_cols=128 Identities=5% Similarity=-0.042 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHH
Q 021258 139 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 218 (315)
Q Consensus 139 G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (315)
++++.++++++|+......|...+ +.+|....++-...+.+++++... ..+ . ...+ +..++..++...
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~~----~~~-~---~~~~--~~~~~~~~l~~~ 72 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTVG----FPR-L---RQFP--KRYLLAGGLLFV 72 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHcc----ccc-c---cccc--HHHHHHHhHHHH
Confidence 466777888999998888877654 368888888888888777665421 100 0 0111 112222222222
Q ss_pred HHHHHHHHHH----hhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 219 TSQFFISYTI----RTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 219 ~~~~~~~~~~----~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
..+.+.+.++ +..++..++++.++.|+++.++++++++|+++..+++|.++.+.|+.+-.
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 2233333333 56788889999999999999999999999999999999999999987655
No 59
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.99 E-value=7.2e-05 Score=57.91 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 216 VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
+...+.+++..++++.+...+...-++.++.+.++|+++|||++++.+++|++++++|+..-
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999998654
No 60
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.87 E-value=0.0005 Score=63.53 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=92.5
Q ss_pred chhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHH--HHHHH---HHHHhCchhHHhHhhhhChHHHHH
Q 021258 135 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSC--VLSLS---GLILEGHLFLAIDFVYHHLDCFFD 209 (315)
Q Consensus 135 ~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 209 (315)
+...|+++++++++|++...+-+|| .|++ ++|.. +. ..+. .+..| ..+..+++.+. ..+.++..+..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w---~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~--~~~~~~~~~~~ 75 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW---SWETM-WS-VGGIFSWLILPWLIAALLLPDFWAY--YSSFSGSTLLP 75 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCC---chhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHH--HHhcCHHHHHH
Confidence 5678999999999999998887766 3443 23443 32 1111 11122 11112222221 11245555554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHccCCC---c----chhhhhHHHHHHHHHhhhhhc
Q 021258 210 VALLSTVATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPL---S----WEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~e~~---t----~~~~iG~~lvl~gv~~~~~~k 281 (315)
-++.+++=.++|+.++.++|+.+-+. ..+..-+.-+.+.+++.+++||-. + ....+|.++++.|+.++.+..
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666789999999999999777 555566788899999999998643 2 336688888999999998755
Q ss_pred cccC
Q 021258 282 KVSE 285 (315)
Q Consensus 282 ~~~~ 285 (315)
.+|+
T Consensus 156 ~~k~ 159 (345)
T PRK13499 156 QLKE 159 (345)
T ss_pred hhcc
Confidence 5444
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.81 E-value=0.0059 Score=56.51 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHhhHhcccCchHHHHH-HhhcchHHHHHHHHHHhcccc-------ChhhHHHHHHHHHhHHHHhcCCC
Q 021258 51 CLVSMSNILTTTCQYEALKYVSFPVQTL-AKCAKMIPVMIWGTLIMQKRY-------KGYDYFLALLVTLGCSIFILFPS 122 (315)
Q Consensus 51 ~~~~~~~~~~~~l~~~al~~v~~~~~~~-l~~~~p~~~~ll~~l~~~~~~-------~~~~~~~l~l~~~Gv~l~~~~~~ 122 (315)
++-|++...+......+.+|+.++..+- --....+...++..++++|-. ...-..+++++++|+++......
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778889999999999976543321 122223445566666666432 23457899999999999988222
Q ss_pred CCCCCCCC--CCCCchhhHHHHHHHHHHhhhhhH-------HHHHHHHccCCCChHHHHHHHHH---HHHH-HHHHHHHH
Q 021258 123 GADLSPYS--KGRENTVWGVSLMVGYLGFDGFTS-------TFQDKLFKGYDMEIHNQIFYTTL---CSCV-LSLSGLIL 189 (315)
Q Consensus 123 ~~~~~~~~--~~~~~~~~G~~~~~~s~~~~a~~~-------v~~~~l~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 189 (315)
.+|.+.+. +++.+.-.|++.++++.+.+++++ ...+... +.+.++....+-+.. .+.. ..+.++..
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~ 235 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-ALGVDPLYAALPSYVVIMGGGAITNLGFCFI 235 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11211110 123456789999999999999887 3333221 234444322222221 1211 11111111
Q ss_pred ---hCc-hhHHhHhhhhChHHHHHHHHH---HHHHHHHHHHHHHHHhhhChHHHHH---HH-HHHHHHHHHHHHHHccCC
Q 021258 190 ---EGH-LFLAIDFVYHHLDCFFDVALL---STVATTSQFFISYTIRTFGALTFAT---IM-TTRQLVSIVLSCVWFRHP 258 (315)
Q Consensus 190 ---~~~-~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~a~~~si---~~-~l~~v~~~ils~l~f~e~ 258 (315)
.++ .....++....+..+...+.- ++.=.+++.++..+-.+.+.....+ +. .+..+++.++|. +++|.
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~ 314 (345)
T PRK13499 236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW 314 (345)
T ss_pred HHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence 111 100001100001112221111 2222344555555555554433333 33 667789999999 59997
Q ss_pred Cc------chhhhhHHHHHHHHHhhh
Q 021258 259 LS------WEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 259 ~t------~~~~iG~~lvl~gv~~~~ 278 (315)
=+ ...++|.++++.|..+..
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig 340 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVG 340 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHh
Confidence 66 567899999888766544
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.79 E-value=0.0015 Score=58.41 Aligned_cols=143 Identities=12% Similarity=0.008 Sum_probs=92.4
Q ss_pred chhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHH
Q 021258 135 NTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLS 214 (315)
Q Consensus 135 ~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (315)
....+....+...+.++......+...+. ..+.....++....+.+...+....... . ......+ .+...+.-+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~ 77 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPR--G--LRPALRP-WLLLLLLAL 77 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcc--c--ccccccc-hHHHHHHHH
Confidence 34456666666667777777666655443 2344555554555554442222111100 0 0001111 122233334
Q ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH-HHccCCCcchhhhhHHHHHHHHHhhhhhccc
Q 021258 215 TVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSC-VWFRHPLSWEQCIGSIIVFGALYTRSFFKKV 283 (315)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~-l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~ 283 (315)
+.....+.+++.++++.++..++++.+..|++..+++. ++++|+++..+++|..+.+.|+.+.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 45566778889999999999999999999999999997 6779999999999988889998887765543
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.78 E-value=0.00023 Score=55.61 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhc
Q 021258 215 TVATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k 281 (315)
++..++.++...++|+.+-.. .++..-+..+.+.++++++|||++|+.+++|+.++++|++......
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344566777888899888776 4555678889999999999999999999999999999987765433
No 64
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00015 Score=65.06 Aligned_cols=221 Identities=13% Similarity=0.183 Sum_probs=127.4
Q ss_pred HHHHH-HHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCCCCCCCCCCC
Q 021258 52 LVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFPSGADLSPYS 130 (315)
Q Consensus 52 ~~~~~-~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~ 130 (315)
..|++ +.++-.++|.|+.|.|.+..+-+-+.+.+..++++..++|||.++...+|..++++|-.+++...++.+.-.+.
T Consensus 68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~ 147 (335)
T KOG2922|consen 68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESV 147 (335)
T ss_pred HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccH
Confidence 56665 67889999999999999888888888899999999999999999999999999999977776654321110000
Q ss_pred CC-----CCchh---hHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHh---
Q 021258 131 KG-----RENTV---WGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDF--- 199 (315)
Q Consensus 131 ~~-----~~~~~---~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 199 (315)
.+ .+... .+.+..+...+. + ...++++. ..++.|....+.+-.+-... ...+..+++.
T Consensus 148 ~el~~~~~~~~Fliy~~~iil~~~il~------~--~~~p~~g~--tnilvyi~i~s~iGS~tV~s-vKalg~aiklt~~ 216 (335)
T KOG2922|consen 148 EEVWELATEPGFLVYVIIIILIVLILI------F--FYAPRYGQ--TNILVYIGICSLIGSLTVMS-VKALGIAIKLTFS 216 (335)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHh------e--eecccccc--cceeehhhHhhhhcceeeee-HHHHHHHHHHHhc
Confidence 00 01111 122111111110 0 11123332 23455555555443211100 0111111111
Q ss_pred ---hhhChHHHHHHHHHHHHHHHHH-HHHHHHHhhhChHHHHHHHH-HHHHHHHHHHHHHccC--CCcchh----hhhHH
Q 021258 200 ---VYHHLDCFFDVALLSTVATTSQ-FFISYTIRTFGALTFATIMT-TRQLVSIVLSCVWFRH--PLSWEQ----CIGSI 268 (315)
Q Consensus 200 ---~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~a~~~si~~~-l~~v~~~ils~l~f~e--~~t~~~----~iG~~ 268 (315)
...+|..|..++.+. .....| .....+++..+++..+.+.+ +-.-+++.-|.++|.| ..+..+ ..|..
T Consensus 217 g~~ql~~~~ty~~~l~~~-~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ 295 (335)
T KOG2922|consen 217 GNNQLFYPLTWIFLLVVA-TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFV 295 (335)
T ss_pred CCcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHH
Confidence 012344454333333 334445 45567899888888666655 4566777888888888 344444 46777
Q ss_pred HHHHHHHhhhhhcccc
Q 021258 269 IVFGALYTRSFFKKVS 284 (315)
Q Consensus 269 lvl~gv~~~~~~k~~~ 284 (315)
.++.|+.+....|+++
T Consensus 296 ti~~G~flL~~~kd~~ 311 (335)
T KOG2922|consen 296 TIFLGIFLLHRTKDME 311 (335)
T ss_pred HhhheeeEeeeecccc
Confidence 7778887765444444
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.69 E-value=0.0014 Score=60.47 Aligned_cols=75 Identities=12% Similarity=0.285 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhc
Q 021258 207 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k 281 (315)
|+--+.++++-..++++...++++++.+.+.+......+++.++|+++++++.++.+++|+.+.++|+.+.....
T Consensus 79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 344445678888999999999999999999999999999999999999999999999999999999987766544
No 66
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.57 E-value=0.001 Score=60.53 Aligned_cols=103 Identities=7% Similarity=-0.103 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhh---HHHHHHH-HHHHHHHhhHhcccCchHHHHHHhhcchHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYK---YCLVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIW 90 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll 90 (315)
|... ..+.+++.+++.+.......... .++.. .+..+++ ..++..+.++++++++.+.+.++.+..|++..++
T Consensus 176 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~ 252 (293)
T PRK10532 176 PATV-AIGSLIAALIFVPIGALQAGEAL--WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252 (293)
T ss_pred chHH-HHHHHHHHHHHHHHHHHccCccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHH
Confidence 3344 45555666555544433322111 11111 2345555 4566778999999999999999999999999999
Q ss_pred HHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 91 GTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 91 ~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
++++++|+++..+++|..++++|++.....
T Consensus 253 ~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 253 GMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887665
No 67
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.56 E-value=0.00094 Score=54.28 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCC-C-----CCC-----c---hhhHHHHHHHHHHHHHHhhHhcccCchHHHHHH
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKAI-D-----PVA-----P---VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLA 79 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~~-~-----~~~-----~---~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l 79 (315)
.|..+.......+.+.+.+.....+... . ... + +...+..|++....+...+..++++++-++.++
T Consensus 34 ~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~ 113 (153)
T PF03151_consen 34 NPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVL 113 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHH
Confidence 4666777777777777766544332211 0 000 1 111234456677888999999999999999999
Q ss_pred hhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHH
Q 021258 80 KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 80 ~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
...+-+.+.++++++++|+++..++.|+.++++|+.+.
T Consensus 114 ~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 114 GNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999998754
No 68
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.53 E-value=0.00081 Score=59.50 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 212 LLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
.-+++-.+.+.+.+.++++.+|.+..+...++.+++.++++++++++++..||.+..+...|+.+.+......
T Consensus 22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 3355666777889999999999999999999999999999999999999999999999999999887655533
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.48 E-value=0.0013 Score=50.76 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhc
Q 021258 216 VATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k 281 (315)
+-.++.++...++|+.+-.. .++-.-+..+.+.++++++|||++++.+++|+.+++.|++.-...+
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455566778888888776 4555678889999999999999999999999999999988765433
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.44 E-value=0.00093 Score=52.26 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHhhHhcccCchH-HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 49 KYCLVSMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 49 ~~~~~~~~~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
.....-+++..+.++...+++++|.+ .+.+......+.+.+++.++++|++++.+++++.++++|++++-..
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 44555566778889999999999987 4566566778889999999999999999999999999999877543
No 71
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.34 E-value=0.0013 Score=52.23 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=56.4
Q ss_pred HHHHHHH-HHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHH--HhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 50 YCLVSMS-NILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL--IMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 50 ~~~~~~~-~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l--~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
++..|+. +.++..+.+.+++.+|.+.+--+.+..+..+++.++. +++|++++.+++|++++++|+.++..+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 4455654 6778889999999999876655556666667777764 799999999999999999999987543
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.32 E-value=5.6e-05 Score=65.35 Aligned_cols=209 Identities=8% Similarity=0.098 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhhHhcccCchHHHHHHh-hcchHHHHHHHHHHhccccChhh----HHHHHHHHHhHHHHhcCCCCCCC
Q 021258 52 LVSMSNILTTTCQYEALKYVSFPVQTLAK-CAKMIPVMIWGTLIMQKRYKGYD----YFLALLVTLGCSIFILFPSGADL 126 (315)
Q Consensus 52 ~~~~~~~~~~~l~~~al~~v~~~~~~~l~-~~~p~~~~ll~~l~~~~~~~~~~----~~~l~l~~~Gv~l~~~~~~~~~~ 126 (315)
+-|++...+-...+.|.+++.++-++=+. .+..+-+-+.+++.++|-.+..+ ..++++.++|+.+.++.|.+ +.
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~-nk 142 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN-NK 142 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc-cc
Confidence 44566788888999999997554332211 12234466778888999888776 46888999999988776431 11
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHH-HHHhCchhHHhHhhhhChH
Q 021258 127 SPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSG-LILEGHLFLAIDFVYHHLD 205 (315)
Q Consensus 127 ~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 205 (315)
+ .++.++.-.|+..++.|.+.|-.|.+..+. .+.+.....+-++ .+.+..... .....+- ..+..
T Consensus 143 ~--~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~----f~v~g~saiLPqA-iGMv~~ali~~~~~~~~-------~~~K~ 208 (288)
T COG4975 143 E--EENPSNLKKGIVILLISTLGYVGYVVLFQL----FDVDGLSAILPQA-IGMVIGALILGFFKMEK-------RFNKY 208 (288)
T ss_pred c--ccChHhhhhheeeeeeeccceeeeEeeecc----ccccchhhhhHHH-HHHHHHHHHHhhccccc-------chHHH
Confidence 1 112345567888888888888777765432 2345444444332 233332222 1111110 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhh----hhHHHHHHHHHh
Q 021258 206 CFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQC----IGSIIVFGALYT 276 (315)
Q Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~----iG~~lvl~gv~~ 276 (315)
.|.. +.-++.=..++++++.+.++.+-.+.=..+.+..+.+.+-+.++++|+-|..++ +|+++++.|..+
T Consensus 209 t~~n-ii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 209 TWLN-IIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHH-HhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 3332 233555567888888888777777766667778889999999999999888764 677777755433
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.30 E-value=0.002 Score=49.56 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhhHhcccCchH-HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHH
Q 021258 50 YCLVSMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 50 ~~~~~~~~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
....-+.+..+.++-..++|++|.+ .+.+-.....+.+.+++.++++|++++.|++++.++++|+++.
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444555677788888999999986 4566666677789999999999999999999999999999764
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.28 E-value=0.0094 Score=45.80 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 216 VATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
+..++.++...++|+.+-.. .++-.-+..+.+.+.++++|+|++++.+++|+.++++|++.-
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 44456677788889888776 677778888999999999999999999999999999998764
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0024 Score=48.43 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHhhHhcccCchH-HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHh
Q 021258 48 YKYCLVSMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 118 (315)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~ 118 (315)
+..+..-+++..+..+-..|++++|.+ .+.+-.....+.+.+.++++++|+.+..+++++.+.++|++..-
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 344555556677788888999999996 56676777778899999999999999999999999999998753
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.23 E-value=0.0025 Score=48.62 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHhhHhcccCchH-HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHH
Q 021258 49 KYCLVSMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 49 ~~~~~~~~~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
..+..-+++..+.++-..++|.+|.+ .+.+-.....+.+.++++++++|+.++.+++++.++++|+++.
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 33444556777888888999999986 4566666777789999999999999999999999999999875
No 77
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.20 E-value=0.0053 Score=54.70 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=76.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH-
Q 021258 163 GYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFISYTIRTFGALTFATIMT- 241 (315)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~- 241 (315)
|.+-+|.++++-+..-+.++.+...++..... ..++..+..-+..+++=.++|...+.+.++.+.+.+-.+++
T Consensus 7 k~gG~~~~Q~lG~t~Gali~alv~~~~~~p~~------~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg 80 (269)
T PF06800_consen 7 KIGGKPANQILGTTIGALIFALVVFLFRQPAF------SMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTG 80 (269)
T ss_pred eeCCcHHHHHHHHHHHHHHHHHHHHHHhCCCc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchh
Confidence 33456777766555544444444333322110 11224444444456666789999999999999998877774
Q ss_pred HHHHHHHHHHHHHccCCCcchhh----hhHHHHHHHHHhhhhhccccC
Q 021258 242 TRQLVSIVLSCVWFRHPLSWEQC----IGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 242 l~~v~~~ils~l~f~e~~t~~~~----iG~~lvl~gv~~~~~~k~~~~ 285 (315)
++-+.+.++++++|||.-+..++ +++++++.|++++.+.+++++
T Consensus 81 ~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 81 LQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 56666889999999997776654 366677789999887666544
No 78
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.18 E-value=0.0031 Score=48.64 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhHhcccCchHH-HHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhc
Q 021258 51 CLVSMSNILTTTCQYEALKYVSFPV-QTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 119 (315)
Q Consensus 51 ~~~~~~~~~~~~l~~~al~~v~~~~-~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~ 119 (315)
...-+++.++..+...+++.+|.+. +.+-.....+.+.++++++++|++++.+++++.++++|+++.-.
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3444556777788889999999874 44545556677899999999999999999999999999988744
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.10 E-value=0.0057 Score=46.70 Aligned_cols=63 Identities=8% Similarity=0.121 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 216 VATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+-.++.++...++|+.+-.. .++-.-+..+.+.+.++++|||++++.+++|+.+++.|++.-+
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 44556677778888888766 6777788999999999999999999999999999999987643
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.0063 Score=46.18 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 216 VATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
+-..++.+...++|+.+-.. .++-.-...+.+.+.|+++|+|++++.+++|+.++++|++.-..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34455667778889888766 78888889999999999999999999999999999999876543
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.80 E-value=0.082 Score=42.48 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHH
Q 021258 140 VSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATT 219 (315)
Q Consensus 140 ~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (315)
+++.+.+..+-++...+..++.++.+ ++..-.+..+..+++.+....++.++. ........| |+. ..-++++.+
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p--~w~-~lGG~lG~~ 76 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP--SLASLSSVP--WWA-YLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCC--hHH-hccHHHHHH
Confidence 34455555566666667777766544 577777777778887776665554432 111111112 221 123667777
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHH-HHHHHHHHH----HccCCCcchhhhhHHHHHHHHHh
Q 021258 220 SQFFISYTIRTFGALTFATIMTTRQ-LVSIVLSCV----WFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 220 ~~~~~~~~~~~~~a~~~si~~~l~~-v~~~ils~l----~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
.-.+....+++.++..+........ +.+.++..+ .-.+++++..++|.++++.|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 6677788889999998776665544 455555654 23568999999999999999763
No 82
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.80 E-value=0.0084 Score=54.72 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=82.7
Q ss_pred CchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHH
Q 021258 134 ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALL 213 (315)
Q Consensus 134 ~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (315)
.+...|+++++.++++.+...++||+-.+|.+.+.... ++ +..+. ..++ .|+.-+..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~-------------------~~--~~~~~-l~~~-~W~~G~~~ 59 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA-------------------GS--GGRSY-LRRP-LWWIGLLL 59 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------cc--hhhHH-HhhH-HHHHHHHH
Confidence 46788999999999999999999888655432111000 00 00000 0122 23322221
Q ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 214 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
..+++.+.+.++...+++..+..+.+.-+++.+++..+++|+++...+.|.++++.|.....
T Consensus 60 ---~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 60 ---MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred ---HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 23444555678888999999999999999999999999999999999999999998865544
No 83
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0013 Score=57.14 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHH
Q 021258 139 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVAT 218 (315)
Q Consensus 139 G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (315)
.++.+++=++.|+...... .|.+-+|.++..-+.+-+.++.+..+++.... .+...+..-+..+.+=.
T Consensus 3 ~~liaL~P~l~WGsip~v~----~k~GG~p~qQ~lGtT~GALifaiiv~~~~~p~--------~T~~~~iv~~isG~~Ws 70 (288)
T COG4975 3 DLLIALLPALGWGSIPLVA----NKFGGKPYQQTLGTTLGALIFAIIVFLFVSPE--------LTLTIFIVGFISGAFWS 70 (288)
T ss_pred hHHHHHHHHHHhcccceee----eecCCChhHhhhhccHHHHHHHHHHheeecCc--------cchhhHHHHHHhhhHhh
Confidence 3556667777887765443 23345677776655444444443332222111 12233333333344456
Q ss_pred HHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHHHHccCCCcchhhh----hHHHHHHHHHhhhhhccccC
Q 021258 219 TSQFFISYTIRTFGALTFATIMT-TRQLVSIVLSCVWFRHPLSWEQCI----GSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 219 ~~~~~~~~~~~~~~a~~~si~~~-l~~v~~~ils~l~f~e~~t~~~~i----G~~lvl~gv~~~~~~k~~~~ 285 (315)
++|...+.+++..+.+.+..+++ ++-+-+.++++++|+|-.++.+.+ ..++++.|++.+.+.+|+++
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk 142 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK 142 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence 78988999999999888777665 566778899999999988887653 44455678888876665443
No 84
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.46 E-value=0.013 Score=51.83 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHH-HccCC-----CcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 218 TTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCV-WFRHP-----LSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 218 ~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l-~f~e~-----~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
+.++.+..-.+|..+=.. ..+-+..+-+.+...|.+ +||.+ -.++.++|.++++.|..++..-|.++
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 345555555555555333 444555566677776655 56542 45678999999988776666555444
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.39 E-value=0.031 Score=41.66 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhHhcccCchH-HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHH
Q 021258 54 SMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLV 110 (315)
Q Consensus 54 ~~~~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~ 110 (315)
-.++..+..+...+++++|.+ .+.+......+.+.+++.++++|+++..|++++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 335777788899999999987 456667778888999999999999999999998653
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.38 E-value=0.016 Score=43.22 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhChHHH-HHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHH
Q 021258 216 VATTSQFFISYTIRTFGALTF-ATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIV 270 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~~-si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lv 270 (315)
+-.++.+++..++|+.+...+ .+..-+..+.+.+.|+++|||++|+.+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344566788889999998886 6666789999999999999999999999999875
No 87
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.38 Score=44.29 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 216 VATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 216 ~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
+-++=+.+.+.+..+.+|.+..+...++...+.+++++++++.+++.||...++...|+.+.+.....+
T Consensus 101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 333444677889999999999999999999999999999999999999999999999999988544433
No 88
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.99 E-value=0.099 Score=42.01 Aligned_cols=102 Identities=9% Similarity=0.117 Sum_probs=71.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCC-CC--CCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHH-hhcchHHHHH
Q 021258 14 YSLFLVFCNRLMTSAVSAGTLIASRKA-ID--PVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMI 89 (315)
Q Consensus 14 ~p~~lt~~q~l~~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l-~~~~p~~~~l 89 (315)
+|..-+++.+.++.+.+.++...++++ .+ ++.||+.|+ -|++......+...+...+..+..+++ -....+..++
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 578888899999999888777665542 21 234544444 666777777888888888877544333 3334455666
Q ss_pred HHHH----HhccccChhhHHHHHHHHHhHHH
Q 021258 90 WGTL----IMQKRYKGYDYFLALLVTLGCSI 116 (315)
Q Consensus 90 l~~l----~~~~~~~~~~~~~l~l~~~Gv~l 116 (315)
++.+ .-|+++++++.++++++++|+.+
T Consensus 108 iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 6665 34799999999999999999863
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.98 E-value=0.014 Score=45.08 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhHhcccCchHHH-HHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHH
Q 021258 50 YCLVSMSNILTTTCQYEALKYVSFPVQ-TLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 50 ~~~~~~~~~~~~~l~~~al~~v~~~~~-~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
|...=+++..+....++.+...+.+.+ -+.+++..++|++.++++.+|..+++.++|+.+++.|+.+.
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 333334577778888888888777643 34478889999999999999999999999999999998763
No 90
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.82 E-value=0.26 Score=45.19 Aligned_cols=145 Identities=10% Similarity=0.044 Sum_probs=82.4
Q ss_pred CchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHH---HHhCchhHHhHhhhhCh-HHHHH
Q 021258 134 ENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGL---ILEGHLFLAIDFVYHHL-DCFFD 209 (315)
Q Consensus 134 ~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~ 209 (315)
..-..|+++..++.++.+...+=.||. |++ ++|..-....+-..+..|.. +..+++.+ .....| +.+..
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~W---sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~---i~~~~~~~~l~~ 75 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGW---SWESYWLVQGIFSWLIVPWLWALLAIPDFFS---IYSATPASTLFW 75 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH---HHHhCChhHHHH
Confidence 355789999999999988877765554 333 23443322222223333432 22233322 222222 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHHcc-------CCCcchhhhhHHHHHHHHHhhhhhc
Q 021258 210 VALLSTVATTSQFFISYTIRTFGALT-FATIMTTRQLVSIVLSCVWFR-------HPLSWEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~a~~-~si~~~l~~v~~~ils~l~f~-------e~~t~~~~iG~~lvl~gv~~~~~~k 281 (315)
....++.=.++.+.+-.++++.+-+. .++..-+-.++..++--++.| ++-....++|.++.+.|+.+..+..
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 34445544456666677788877554 555555555555555444433 2334467899999999999888765
Q ss_pred cccC
Q 021258 282 KVSE 285 (315)
Q Consensus 282 ~~~~ 285 (315)
.+|+
T Consensus 156 ~~Ke 159 (344)
T PF06379_consen 156 SMKE 159 (344)
T ss_pred Hhhh
Confidence 5444
No 91
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.69 E-value=0.0035 Score=55.08 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 212 LLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
+-|+.+..+-+..++++++.+-..++++....|++++++++.+++|+.|.....|..+.+.|+++-.+
T Consensus 102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 34777777888889999999999999999999999999999999999999999999999999877653
No 92
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.71 E-value=0.028 Score=47.31 Aligned_cols=66 Identities=8% Similarity=0.201 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 219 TSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 219 ~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
.+++.|..++++.+|+.++.+...+..+..+++++++||++....+...++.++|++.-.|..+.+
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 567889999999999999999999999999999999999999999999999999988777655433
No 93
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.64 E-value=0.3 Score=42.95 Aligned_cols=59 Identities=8% Similarity=-0.013 Sum_probs=52.9
Q ss_pred HHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhc
Q 021258 61 TTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 119 (315)
Q Consensus 61 ~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~ 119 (315)
..+...+++.+|..++.++-+..|.+..+.++++++|+++..||+++..++.+.+-...
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 46788899999999999999999999999999999999999999999999988775444
No 94
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.25 E-value=1.9 Score=35.05 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHH
Q 021258 138 WGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVA 217 (315)
Q Consensus 138 ~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (315)
...++.+.+..+-.+......++.+..+ +|.--.+..+..+++.+.......... ...+.. .+.-|+.. .-|+++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~--~~~pwW~~-~GG~lG 79 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGH-PGLAAV--ASAPWWAW-IGGLLG 79 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCC-Cchhhc--cCCchHHH-Hccchh
Confidence 3455556666666666666667755443 566666666677777666554442211 111111 11123221 112333
Q ss_pred HHHHHHHHHHHhhhChHHH-HHHHHHHHHHHHHHHHHHc-c---CCCcchhhhhHHHHHHHHHhhhh
Q 021258 218 TTSQFFISYTIRTFGALTF-ATIMTTRQLVSIVLSCVWF-R---HPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 218 ~~~~~~~~~~~~~~~a~~~-si~~~l~~v~~~ils~l~f-~---e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
.+.-........+.++++. .++-.-+-+.+.++..+=+ | .++++..++|++++++|+.+...
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 2222222344566666664 4444455556666665533 2 47999999999999999666543
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.12 E-value=0.093 Score=40.48 Aligned_cols=60 Identities=5% Similarity=0.050 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhChHHHHHH-HHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHh
Q 021258 217 ATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 217 ~~~~~~~~~~~~~~~~a~~~si~-~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
.-.+...++..+.+.+=+.+..+ +.+.-+++.+.++++.+|..+...++|.++++.|+.+
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 44566677888888888776666 6899999999999999889999999999999999754
No 96
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.13 E-value=0.23 Score=45.93 Aligned_cols=71 Identities=3% Similarity=0.095 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 212 LLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
.++..=+++++.+..++++++....+++....-.|++.++.++-+|++|+..+++..+-++|+++....+.
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 34444567788888899999999999999999999999999999999999999999999999988876654
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.75 E-value=0.27 Score=42.61 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHH
Q 021258 55 MSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSI 116 (315)
Q Consensus 55 ~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l 116 (315)
+....+-.+....++|.+..+..+...+.++++.+++.++++++++..++.+..+++.|+.+
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34445556666777888877778888889999999999999999999999999999988653
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=5.7 Score=36.18 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHccCCCCh-HHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHH
Q 021258 139 GVSLMVGYLGFDGFTSTFQDKLFKGYDMEI-HNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVA 217 (315)
Q Consensus 139 G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (315)
....++..++++.+..+..|....+|+.+. ...+++++..+.+.....-.. + +.+..++-....+.|..+-.+ -
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~-lv~~~~l~~~~~kk~~P~~~l---f 87 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-G-LVNFRPLDLRTAKKWFPVSLL---F 87 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-c-eeecCCcChHHHHHHccHHHH---H
Confidence 344455556666666667777777776543 555667777766554332111 1 101001111122333221111 1
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHh
Q 021258 218 TTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 218 ~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
..-.+.-.+.+|+.+-....++..+.++++.+...++++..++...+.....+++|...
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~ 146 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVA 146 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHh
Confidence 11112234578999999999999999999999999999999999999999888876543
No 99
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=90.97 E-value=0.39 Score=44.05 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHH
Q 021258 206 CFFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALY 275 (315)
Q Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~ 275 (315)
.+..++-++++-.++..+...++++.+-+.+-++..++|+++.++++++.+|+.+...+.-.+.+..|+.
T Consensus 82 ~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ 151 (316)
T KOG1441|consen 82 PLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVA 151 (316)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEE
Confidence 4566666777777788788889999999999999999999999999999999988765544444444433
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.85 E-value=0.29 Score=42.53 Aligned_cols=73 Identities=8% Similarity=0.182 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhc
Q 021258 47 VYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 119 (315)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~ 119 (315)
+++....+++..++-++.+.-..+..+-+..+...+.-+||.+.+.+++..+.+.+||++..+++.|+..-..
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 4455677777777888888777776554444555666788999999999999999999999999999876543
No 101
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.31 E-value=5.2 Score=32.51 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCchhhHHHHHHHHHHHHHHhhHhcccCchH-HHHHHhhcchHHH
Q 021258 13 KYSLFLVFCNRLMTSAVSAGTLIASRKAID----PVAPVYKYCLVSMSNILTTTCQYEALKYVSFP-VQTLAKCAKMIPV 87 (315)
Q Consensus 13 ~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~ 87 (315)
.+|..-.+..++++++.+.++...+.++.+ .+.|||.++ -|++.......+......+..+ +..+.-+...+.-
T Consensus 32 ~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~-GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 32 GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWI-GGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHH-ccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 468888888999988888777665433221 234554443 2333333334444444444443 3333334444555
Q ss_pred HHHHHH-Hh---ccccChhhHHHHHHHHHhHHHH
Q 021258 88 MIWGTL-IM---QKRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 88 ~ll~~l-~~---~~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
++++.+ ++ ++++++.++.+++++++|+.++
T Consensus 111 lliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 111 LLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 555544 22 6999999999999999995544
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.48 E-value=17 Score=33.56 Aligned_cols=229 Identities=10% Similarity=-0.058 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHhhHhcccCchH--HHHHHhhcchHHHHHHHHH------HhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 49 KYCLVSMSNILTTTCQYEALKYVSFP--VQTLAKCAKMIPVMIWGTL------IMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 49 ~~~~~~~~~~~~~~l~~~al~~v~~~--~~~~l~~~~p~~~~ll~~l------~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
...+.|++..++....=.+.||+..+ ..+.+-.|..+=|++=-.+ ++.++-....+++++++++|+++....
T Consensus 75 ~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 75 WTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 33556777777766666788986543 3444444332222211111 122333457799999999999988765
Q ss_pred CCCCCCCCCC-CCCCchhhHHHHHHHHHHhhhhhHHHHHHH------HccCCCChHHHH----HHHHHHHHHHHHHHHHH
Q 021258 121 PSGADLSPYS-KGRENTVWGVSLMVGYLGFDGFTSTFQDKL------FKGYDMEIHNQI----FYTTLCSCVLSLSGLIL 189 (315)
Q Consensus 121 ~~~~~~~~~~-~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 189 (315)
...+|.+.+. .++.+.-.|++.++++.+.+++.+.-.+.= -.+.+.++.... .....-+.+..+.++++
T Consensus 155 G~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~ 234 (344)
T PF06379_consen 155 GSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLI 234 (344)
T ss_pred HHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHH
Confidence 4333321111 112334579999988888887766432210 011223321111 01111122233333322
Q ss_pred h----CchhHHhHhhhhChHHHHHHHHHHHHHHH--HHHHHH-HHHh----hhChHHHHHHHHHHHHHHHHHHHHHccC-
Q 021258 190 E----GHLFLAIDFVYHHLDCFFDVALLSTVATT--SQFFIS-YTIR----TFGALTFATIMTTRQLVSIVLSCVWFRH- 257 (315)
Q Consensus 190 ~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~-~~~~----~~~a~~~si~~~l~~v~~~ils~l~f~e- 257 (315)
- .+....-|+....+......+...+.+.+ .|++.+ .+-. ..+.+.-.+...+..+++-+++.+. +|
T Consensus 235 ~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l-kEW 313 (344)
T PF06379_consen 235 LLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL-KEW 313 (344)
T ss_pred HHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 1 01000001101112222233333333333 232222 2222 2346667778888888888888854 44
Q ss_pred -----CCcchhhhhHHHHHHHHHhhh
Q 021258 258 -----PLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 258 -----~~t~~~~iG~~lvl~gv~~~~ 278 (315)
+.-..-++|+++++.++.+.-
T Consensus 314 Kg~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 314 KGASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 222335788888777766543
No 103
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.47 E-value=9.1 Score=34.77 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=86.3
Q ss_pred hHHHHHHHHcc-CC------CChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHHHHHHHHHHHHHHHHHH
Q 021258 153 TSTFQDKLFKG-YD------MEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFDVALLSTVATTSQFFIS 225 (315)
Q Consensus 153 ~~v~~~~l~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 225 (315)
..++|||+..+ |+ .++.-+.+-+.+.+.++....+ .+ . ........-|.-.-+.++.+.++..+.+
T Consensus 29 ~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l--~~-~----k~~~~~~apl~~y~~is~tn~~s~~~~y 101 (327)
T KOG1581|consen 29 WGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAML--KW-W----KKELSGVAPLYKYSLISFTNTLSSWCGY 101 (327)
T ss_pred HHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHH--hc-c----cccCCCCCchhHHhHHHHHhhcchHHHH
Confidence 45789998653 41 2345555555555555543322 11 0 0001112224444455677778888889
Q ss_pred HHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 226 YTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 226 ~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
.++|++|=-+..+.-..|-+-..+++.++.+.+.++....=..+|-+|+.+....++..
T Consensus 102 eaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 102 EALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 99999999999999999999999999999999999999988888888887777654433
No 104
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.58 E-value=1.4 Score=39.37 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 214 STVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
++|-..+..+.+.++-.++|+..-+.--.-.+++-+++..+++.+++..+|.|+..+..|+++..+
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 566777777777788888888888888888899999999999999999999999999999876543
No 105
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=0.24 Score=44.91 Aligned_cols=116 Identities=11% Similarity=0.119 Sum_probs=77.6
Q ss_pred CCchhhHHHHHHHHHHhhhhhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHhCchhHHhHhhhhChHHHHH-HH
Q 021258 133 RENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLSGLILEGHLFLAIDFVYHHLDCFFD-VA 211 (315)
Q Consensus 133 ~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 211 (315)
..++..|.++...+.+.-+...+..||-.+|.+... .-. -+|. ..+. .+ ..|+. ++
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~--~ra---------------~~gg----~~yl-~~-~~Ww~G~l 72 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASG--LRA---------------GEGG----YGYL-KE-PLWWAGML 72 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhc--ccc---------------cCCC----cchh-hh-HHHHHHHH
Confidence 367788999988888877777777666554432100 000 0111 0111 11 23332 22
Q ss_pred HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHH
Q 021258 212 LLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALY 275 (315)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~ 275 (315)
.+ .+|...-|.++...+++..+..+.+..+.+.+++..+++|.+++...+|.++.+.|-+
T Consensus 73 tm----~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst 132 (335)
T KOG2922|consen 73 TM----IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGST 132 (335)
T ss_pred HH----HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccE
Confidence 22 3455555677777899999999999999999999999999999999999999887643
No 106
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.83 E-value=3.1 Score=37.19 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC-----CCchhhH---HHHHHHHHHH--HHHhhHhcccCchHHHHHHhhcchHH
Q 021258 17 FLVFCNRLMTSAVSAGTLIASRKAIDP-----VAPVYKY---CLVSMSNILT--TTCQYEALKYVSFPVQTLAKCAKMIP 86 (315)
Q Consensus 17 ~lt~~q~l~~~l~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~--~~l~~~al~~v~~~~~~~l~~~~p~~ 86 (315)
..+++-..+++.+++..+..+++-.+. ..|++.| ++.++...++ ..+..+.+--. .++.+.....=..
T Consensus 222 EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA--~~aatvTTaRKav 299 (367)
T KOG1582|consen 222 EMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGA--LIAATVTTARKAV 299 (367)
T ss_pred eEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhch--hHHHHHHHhHhHH
Confidence 334455556666666555555543221 2444433 2334443333 23444333222 2222222223344
Q ss_pred HHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCC
Q 021258 87 VMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 121 (315)
Q Consensus 87 ~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~ 121 (315)
|.+++++++.|+++....-+.++++.|+.+-.+++
T Consensus 300 Ti~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 300 TILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 89999999999999999999999999999877763
No 107
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=82.56 E-value=0.71 Score=40.73 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhh
Q 021258 207 FFDVALLSTVATTSQFFISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~ 279 (315)
|..-+++++...=++++...+.|+++-+.+.+...-..+...+++|++++.+-.+.++.|.++.++|++....
T Consensus 78 ~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 78 WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 4444455666666788888999999999999999999999999999999999999999999999999876553
No 108
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=81.64 E-value=32 Score=29.31 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=17.8
Q ss_pred HHHHHHHccCCCcchhhhhHHHHH
Q 021258 248 IVLSCVWFRHPLSWEQCIGSIIVF 271 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~iG~~lvl 271 (315)
-.+|..+|++..=+...+|..+.+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLv 156 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLV 156 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777877788889988864
No 109
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=77.26 E-value=63 Score=31.23 Aligned_cols=21 Identities=0% Similarity=-0.047 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 021258 233 ALTFATIMTTRQLVSIVLSCV 253 (315)
Q Consensus 233 a~~~si~~~l~~v~~~ils~l 253 (315)
+...++.+....+...+.+++
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred hhhhhhhhccccHHHHHHHHH
Confidence 344444444444444444443
No 110
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=76.15 E-value=6.6 Score=34.12 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 51 CLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 51 ~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
++-|++.....++.-+.++-++.+++.+..+..-.+..+.+.+++.++.++..+.++++++...++....
T Consensus 228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666788888888888888888888877778888888899999999998888888877776654
No 111
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=75.82 E-value=3.3 Score=31.32 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHhhHhcccCchHHH-HHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHH
Q 021258 49 KYCLVSMSNILTTTCQYEALKYVSFPVQ-TLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 49 ~~~~~~~~~~~~~~l~~~al~~v~~~~~-~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
+|.+.=+++-.+..+.+.-++..+.+.+ -+.++....++++.+..+..|..-++.+++..++++|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4444445566667777777777655422 23466677889999999888888888899999999998764
No 112
>PRK02237 hypothetical protein; Provisional
Probab=74.81 E-value=35 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=29.4
Q ss_pred HHHHHHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 87 VMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 87 ~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
..+..+.+-++|+++.++.+..++++|+.++.+.
T Consensus 73 Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 73 SLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 4456778889999999999999999999887665
No 113
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.92 E-value=37 Score=25.80 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=45.9
Q ss_pred hhcCCCCCCCchhhHHHHH----HH-HHHHHHHhhHhcccCchH-HHHHHhhcchHHHHHHHHHHhccccChhhHHHHHH
Q 021258 36 ASRKAIDPVAPVYKYCLVS----MS-NILTTTCQYEALKYVSFP-VQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALL 109 (315)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~al~~v~~~-~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l 109 (315)
+.+-|.+...|++..++.| ++ +......+-++.+..+.. ..++=-..+...-+..+.+++||++++....+-++
T Consensus 19 YGHLK~~~~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~ 98 (108)
T PF04342_consen 19 YGHLKFKSSKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLC 98 (108)
T ss_pred HHHhhccccCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHH
Confidence 3443433345665444332 22 344445556666665543 22221222233345567888999999999999888
Q ss_pred HHHhHHH
Q 021258 110 VTLGCSI 116 (315)
Q Consensus 110 ~~~Gv~l 116 (315)
+..++..
T Consensus 99 i~~av~f 105 (108)
T PF04342_consen 99 ILGAVYF 105 (108)
T ss_pred HHHhhhe
Confidence 8777654
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.34 E-value=5.3 Score=30.30 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=29.6
Q ss_pred HHHHHHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 87 VMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 87 ~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
..+..+.+-++|+++.++++..++++|+.++.+.
T Consensus 71 Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 71 SLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 4556777889999999999999999999988765
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.21 E-value=3.7 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=25.3
Q ss_pred HHHHHHHccCCCcchhhhhHHHHHHHHHh
Q 021258 248 IVLSCVWFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
..+++++++|++++.+..|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999999988654
No 116
>PRK02237 hypothetical protein; Provisional
Probab=70.36 E-value=41 Score=25.65 Aligned_cols=43 Identities=14% Similarity=-0.037 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 235 TFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 235 ~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
..+..+-.-.+.++++++.+-|++++..-++|..+.+.|+.+-
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 3667777888999999999999999999999999999886544
No 117
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.86 E-value=14 Score=27.67 Aligned_cols=30 Identities=23% Similarity=0.652 Sum_probs=26.0
Q ss_pred HHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 248 IVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
+.+|++.++|++.+.++.|..++.+|++..
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 356888999999999999999999987654
No 118
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=68.11 E-value=54 Score=31.86 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=19.1
Q ss_pred CcchhhhhHHHHHHHHHhhhhhcc
Q 021258 259 LSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 259 ~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
++..|++.+.++++|+++..+.+|
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999877665443
No 119
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=66.39 E-value=96 Score=27.60 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHH-HHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHH
Q 021258 15 SLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLV-SMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTL 93 (315)
Q Consensus 15 p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l 93 (315)
+.+.-++++....+..++....++. .++..+..+ |.+...++.+.--..+.+..+..+++-.+. .++.+|.
T Consensus 27 g~~fQw~~~~~i~~~g~~v~~~~~~-----p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~---n~l~Gw~ 98 (254)
T PF07857_consen 27 GFFFQWVMCSGIFLVGLVVNLILGF-----PPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSV---NCLTGWA 98 (254)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCC-----CcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHH---HHHHHHH
Confidence 6666667766666666655544432 234445444 466788888888888888888877776664 3344444
Q ss_pred H-----hc---c--ccChhhHHHHHHHHHhHHHHhcC
Q 021258 94 I-----MQ---K--RYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 94 ~-----~~---~--~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
. ++ + +-++..++++.++++|.+++.+-
T Consensus 99 ~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 99 SGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred HhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 3 22 2 23466788999999998887763
No 120
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=65.92 E-value=13 Score=28.24 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 236 FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 236 ~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
.+..+-.-.+.++++++.+-+++|+..-++|..+.+.|+.+-.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 5566667788999999999999999999999999998765543
No 121
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=62.83 E-value=7.5 Score=28.01 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=8.9
Q ss_pred HHHhhhhhccccCCCC--------CCCCCcccccccc
Q 021258 273 ALYTRSFFKKVSEKPR--------PSEHPMENMHNGA 301 (315)
Q Consensus 273 gv~~~~~~k~~~~~~~--------~~~~~~~~~~~~~ 301 (315)
++++-.|.|.|+++|- +++++++++.+|.
T Consensus 24 ~iv~ieYrk~~rqrkId~li~RIreraEDSGnES~Gd 60 (81)
T PF00558_consen 24 TIVYIEYRKIKRQRKIDRLIERIRERAEDSGNESDGD 60 (81)
T ss_dssp HHH------------CHHHHHHHHCTTTCCHCTTTTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcccccCCCCCCCc
Confidence 4455556665555432 6666655544443
No 122
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=61.33 E-value=2.7 Score=37.57 Aligned_cols=94 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred CchHHHHHHhhcchHH-HHHHHHHHhccccCh-hhHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 021258 71 VSFPVQTLAKCAKMIP-VMIWGTLIMQKRYKG-YDYFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLG 148 (315)
Q Consensus 71 v~~~~~~~l~~~~p~~-~~ll~~l~~~~~~~~-~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~ 148 (315)
.+-+..+++.+...+. +.++-.++||||.=. .-.++++++++-..+..... + + .+.-+.|+++.++.+.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~t----L---t--GQ~LF~Gi~~l~l~~l 117 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWT----L---T--GQTLFVGIVILFLCCL 117 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH----h---h--ccHHHHHHHHHHHHHH
Confidence 3333444444444333 333345566766543 34556666555544433331 1 1 2344567776555544
Q ss_pred hhhhhHHHHHHHHccCCCChHHHHHH
Q 021258 149 FDGFTSTFQDKLFKGYDMEIHNQIFY 174 (315)
Q Consensus 149 ~~a~~~v~~~~l~~~~~~~~~~~~~~ 174 (315)
+.=....+ -.++++++.+.++++.+
T Consensus 118 LaL~vW~Y-m~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 118 LALGVWFY-MWLLRELGASFWTILAF 142 (381)
T ss_dssp --------------------------
T ss_pred HHHHHHHH-HHHHHHhhhHHHHHHHH
Confidence 32222223 23567888777777654
No 123
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=61.15 E-value=43 Score=24.78 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=32.4
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHHHHHHH---ccCC-CcchhhhhHHHHHHHHHhhhhhccccCCCC
Q 021258 225 SYTIRTFGALTFATIMTTRQLVSIVLSCVW---FRHP-LSWEQCIGSIIVFGALYTRSFFKKVSEKPR 288 (315)
Q Consensus 225 ~~~~~~~~a~~~si~~~l~~v~~~ils~l~---f~e~-~t~~~~iG~~lvl~gv~~~~~~k~~~~~~~ 288 (315)
..++|+++-.....+-.+.-++.+++|.+. .++. +-...|.|.+--+++-.+.+.-.||.++..
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~ 89 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYG 89 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcC
Confidence 455666554344444444455555555543 3332 333357787766765555554444444333
No 124
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=59.25 E-value=22 Score=30.46 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=29.0
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHccCCCc-chhhhhHHHHH-HHH-Hhhhh
Q 021258 231 FGALTFATIMTTRQLVSIVLSCVWFRHPLS-WEQCIGSIIVF-GAL-YTRSF 279 (315)
Q Consensus 231 ~~a~~~si~~~l~~v~~~ils~l~f~e~~t-~~~~iG~~lvl-~gv-~~~~~ 279 (315)
..+...+++..+-+..+..+|..+-+--.. +.+|+|.++.+ .|+ .+.+.
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNA 82 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777765543333 46788877754 454 34343
No 125
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.91 E-value=10 Score=28.61 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=28.9
Q ss_pred HHHHHHHHhccccChhhHHHHHHHHHhHHHHhcCC
Q 021258 87 VMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 121 (315)
Q Consensus 87 ~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~~ 121 (315)
..+..+++-++++++.+|.+..++++|+.++.+.|
T Consensus 72 sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 72 SLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 44556677799999999999999999998877653
No 126
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.77 E-value=7.3 Score=30.51 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=6.6
Q ss_pred hHHHHHHHHHhhhhhcccc
Q 021258 266 GSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 266 G~~lvl~gv~~~~~~k~~~ 284 (315)
|++.+++.+.|..++++||
T Consensus 76 GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3333333333444333333
No 127
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.77 E-value=11 Score=26.20 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=11.8
Q ss_pred HHHHHhhhhhccccCCCCC
Q 021258 271 FGALYTRSFFKKVSEKPRP 289 (315)
Q Consensus 271 l~gv~~~~~~k~~~~~~~~ 289 (315)
+.+.+.+.|-|.|+.+|++
T Consensus 46 ~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 46 LLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHhHhhhhhhHhhhHh
Confidence 4455666677776665554
No 128
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=54.75 E-value=30 Score=27.82 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=25.5
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHccCCC--cchhhhhHHHHH-HHHHhhhhhccccC
Q 021258 231 FGALTFATIMTTRQLVSIVLSCVWFRHPL--SWEQCIGSIIVF-GALYTRSFFKKVSE 285 (315)
Q Consensus 231 ~~a~~~si~~~l~~v~~~ils~l~f~e~~--t~~~~iG~~lvl-~gv~~~~~~k~~~~ 285 (315)
-+....+.+-|+-|+++.+++.++++.-. .....+|+++-. .|.+......||-+
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~ 129 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLA 129 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666655532211 122334444433 35444443333333
No 129
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=51.13 E-value=33 Score=27.23 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHH
Q 021258 264 CIGSIIVFGALY 275 (315)
Q Consensus 264 ~iG~~lvl~gv~ 275 (315)
++|..+...|++
T Consensus 90 i~g~~~~~~G~~ 101 (136)
T PF08507_consen 90 IIGLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHHHH
Confidence 344444444543
No 130
>PF15102 TMEM154: TMEM154 protein family
Probab=51.05 E-value=19 Score=28.99 Aligned_cols=19 Identities=5% Similarity=0.338 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhhhccccC
Q 021258 267 SIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 267 ~~lvl~gv~~~~~~k~~~~ 285 (315)
.+|++..|++..+.|||+.
T Consensus 69 vlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHheeEEeeccc
Confidence 3333444555555555444
No 131
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=49.37 E-value=1.5e+02 Score=25.02 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHH-----HHHhhhhhccc
Q 021258 234 LTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG-----ALYTRSFFKKV 283 (315)
Q Consensus 234 ~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~-----gv~~~~~~k~~ 283 (315)
...+++.....++..+.-+-+++-+++...+.|+..+++ .++++.+-|++
T Consensus 57 ~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~IVifdRIre~ 111 (189)
T PF02355_consen 57 ALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDNIVIFDRIREE 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcceeehHHHHHH
Confidence 334444455555555555667888999999999988876 34555544443
No 132
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=48.86 E-value=30 Score=27.31 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021258 235 TFATIMTTRQLVSIVLSCVW 254 (315)
Q Consensus 235 ~~si~~~l~~v~~~ils~l~ 254 (315)
.++.+.|+-|++..+++.++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 133
>PHA03049 IMV membrane protein; Provisional
Probab=47.40 E-value=26 Score=24.06 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=17.8
Q ss_pred hhhHHHHHHH-HHhhhhhccccC-CCCCCCCCcccccc
Q 021258 264 CIGSIIVFGA-LYTRSFFKKVSE-KPRPSEHPMENMHN 299 (315)
Q Consensus 264 ~iG~~lvl~g-v~~~~~~k~~~~-~~~~~~~~~~~~~~ 299 (315)
++++.+++.| ++|..|.|+++. ..++..+..++.|+
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMED 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCchh
Confidence 4555555555 455556666543 23333333455554
No 134
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=45.02 E-value=1.2e+02 Score=25.63 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=12.0
Q ss_pred CCchhhHHHHHHHHHHHHHHhhHhcccCch
Q 021258 44 VAPVYKYCLVSMSNILTTTCQYEALKYVSF 73 (315)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~~al~~v~~ 73 (315)
|.++++++.+.....+-..+-+++-.++|.
T Consensus 158 r~~~~K~~lv~~~sm~lWi~v~i~t~~lPt 187 (226)
T COG4858 158 RPGTWKYLLVAVLSMLLWIAVMIATVFLPT 187 (226)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344455554443322222233344444443
No 135
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.63 E-value=1.5e+02 Score=22.65 Aligned_cols=26 Identities=15% Similarity=-0.046 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHH---ccCCCcchhhhhHHHH
Q 021258 243 RQLVSIVLSCVW---FRHPLSWEQCIGSIIV 270 (315)
Q Consensus 243 ~~v~~~ils~l~---f~e~~t~~~~iG~~lv 270 (315)
..++...++|++ +|. +++.+|...++
T Consensus 55 GilVGa~iG~llD~~agT--sPwglIv~lll 83 (116)
T COG5336 55 GILVGAGIGWLLDKFAGT--SPWGLIVFLLL 83 (116)
T ss_pred HHHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Confidence 345666667654 333 45555555554
No 136
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=41.64 E-value=2.9e+02 Score=26.62 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.9
Q ss_pred CCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 258 PLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 258 ~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
.-++..++|.++.+..+.|...+..
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccccc
Confidence 3556678999999999888876543
No 137
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=41.35 E-value=37 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=10.7
Q ss_pred hhhHHHHH--HHHHhhhhhccc
Q 021258 264 CIGSIIVF--GALYTRSFFKKV 283 (315)
Q Consensus 264 ~iG~~lvl--~gv~~~~~~k~~ 283 (315)
++++++++ .|+.+....|++
T Consensus 6 iV~i~iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 34444443 466666656553
No 138
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.08 E-value=27 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=21.9
Q ss_pred CCcchhhhhHHHHHHHHHhhhhhccccC
Q 021258 258 PLSWEQCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 258 ~~t~~~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
.+++..++|++++++|+.++..++.|++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4688899999999999888876555444
No 139
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=37.90 E-value=3.8e+02 Score=25.82 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=30.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhH
Q 021258 12 FKYSLFLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYE 66 (315)
Q Consensus 12 f~~p~~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 66 (315)
|++|.++..+|.++-.+..++..+.-++.. .+.+.-+.+++.+.++......
T Consensus 56 ~Ps~~tLli~Qal~la~~~~pl~~lar~~~---~~~~~a~~~~~~ylL~p~~~~~ 107 (449)
T PF09852_consen 56 FPSPLTLLIVQALLLALGAIPLYRLARRRL---LSRRLALLIALAYLLSPGLQGA 107 (449)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHhHHHHhh
Confidence 578999999997776666665444333221 1223334556666666554443
No 140
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=37.50 E-value=1.4e+02 Score=22.72 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhh
Q 021258 236 FATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRS 278 (315)
Q Consensus 236 ~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~ 278 (315)
.+-.+-+-.+.++++.+++-|..++..-++|.++.+.|+.+-.
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil 103 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVIL 103 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeE
Confidence 4455667788899999999999999999999999988864433
No 141
>PRK04570 cell division protein ZipA; Provisional
Probab=37.49 E-value=51 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhccccCCCC-CCCCC
Q 021258 268 IIVFGALYTRSFFKKVSEKPR-PSEHP 293 (315)
Q Consensus 268 ~lvl~gv~~~~~~k~~~~~~~-~~~~~ 293 (315)
.+.++++.+....|++.+.++ +.++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~p 42 (243)
T PRK04570 16 LLLVAAIFLFGRPKKSPQGRRVDKEEP 42 (243)
T ss_pred HHHHHHHHHhcCCCCCcccccccccCC
Confidence 344567777777777666433 34444
No 142
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=37.01 E-value=3.3e+02 Score=26.26 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HhhcchHHHHHHHHHHh-----ccccChhh--HHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhh
Q 021258 79 AKCAKMIPVMIWGTLIM-----QKRYKGYD--YFLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDG 151 (315)
Q Consensus 79 l~~~~p~~~~ll~~l~~-----~~~~~~~~--~~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a 151 (315)
.|+...++.+.+..+++ |+|+.+.| ++|+.+++.=+.+.+.+ +...++...++.|..+-+
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlS-------------Ehi~F~~AYliAa~a~i~ 364 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLS-------------EHIGFNLAYLIAALACIG 364 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-------------hhhchHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH
Q 021258 152 FTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLSLS 185 (315)
Q Consensus 152 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (315)
+...+...++|+.+....--.....+++.+..+.
T Consensus 365 Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL 398 (430)
T PF06123_consen 365 LISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL 398 (430)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
No 143
>PRK11469 hypothetical protein; Provisional
Probab=36.90 E-value=70 Score=27.01 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHH-HHH
Q 021258 234 LTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVF-GAL 274 (315)
Q Consensus 234 ~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl-~gv 274 (315)
...+.+..+.|..+..++..+-+-...+.+|+|..+.+ .|.
T Consensus 41 l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~ 82 (188)
T PRK11469 41 LIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGG 82 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777776554444566788888754 354
No 144
>PF15345 TMEM51: Transmembrane protein 51
Probab=36.88 E-value=33 Score=29.87 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhhhhhccccCC
Q 021258 265 IGSIIVFGALYTRSFFKKVSEK 286 (315)
Q Consensus 265 iG~~lvl~gv~~~~~~k~~~~~ 286 (315)
.|+++.+.++.+..+.|||.+.
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666667788888877776643
No 145
>PRK11715 inner membrane protein; Provisional
Probab=35.67 E-value=4e+02 Score=25.78 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=30.6
Q ss_pred ccccChhhHH--HHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccCC
Q 021258 96 QKRYKGYDYF--LALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYD 165 (315)
Q Consensus 96 ~~~~~~~~~~--~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~~ 165 (315)
|.|+.+.|++ |+.+++.=+.+++.+ | +-.. +...++.|..|-++...+....+++.+
T Consensus 326 ~~~iHpiQYlLVGlAl~lFYLLLLSlS----E-------HigF--~~AYliAa~a~v~li~~Y~~~vl~~~k 384 (436)
T PRK11715 326 KLRIHPVQYLLVGLALVLFYLLLLSLS----E-------HIGF--TLAYLIAALACVLLIGFYLSAVLRSWK 384 (436)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHHHH----h-------hhch--HHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 6888888854 455555555555543 1 1233 333444444455555556666666543
No 146
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=35.53 E-value=50 Score=22.81 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=12.5
Q ss_pred hhhhHHHHHH-HHHhhhhhcccc
Q 021258 263 QCIGSIIVFG-ALYTRSFFKKVS 284 (315)
Q Consensus 263 ~~iG~~lvl~-gv~~~~~~k~~~ 284 (315)
-++++.+++. .++|..|.|++.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 3456666554 456666666544
No 147
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.22 E-value=4.9e+02 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=15.3
Q ss_pred HHHHHhc-cccChhhHHHHHHHHHhHHHH
Q 021258 90 WGTLIMQ-KRYKGYDYFLALLVTLGCSIF 117 (315)
Q Consensus 90 l~~l~~~-~~~~~~~~~~l~l~~~Gv~l~ 117 (315)
++.++.+ ++.++.-+++.++.++++..+
T Consensus 369 ~g~l~~~ir~~Kw~li~~~~~~ta~~Gam 397 (599)
T PF06609_consen 369 LGLLFSKIRHIKWQLIFGSVLMTAFCGAM 397 (599)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 3444444 455555567777776654333
No 148
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=34.98 E-value=3.7e+02 Score=24.89 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 021258 183 SLSGLIL 189 (315)
Q Consensus 183 ~~~~~~~ 189 (315)
++|.+++
T Consensus 41 ~lP~liF 47 (385)
T PF03547_consen 41 FLPALIF 47 (385)
T ss_pred HHHHHHH
Confidence 3444433
No 149
>PF14851 FAM176: FAM176 family
Probab=34.18 E-value=51 Score=26.88 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHhhhhh
Q 021258 265 IGSIIVFGALYTRSFF 280 (315)
Q Consensus 265 iG~~lvl~gv~~~~~~ 280 (315)
+|.++.+..++.-.-+
T Consensus 32 ~GLlLtLcllV~risc 47 (153)
T PF14851_consen 32 AGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHhhhee
Confidence 4455555444444333
No 150
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=33.93 E-value=14 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhhccccCC
Q 021258 267 SIIVFGALYTRSFFKKVSEK 286 (315)
Q Consensus 267 ~~lvl~gv~~~~~~k~~~~~ 286 (315)
.++++.|+++..+.+++|++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHhCCCcchh
Confidence 34566788888777666653
No 151
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=33.56 E-value=45 Score=20.84 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=20.7
Q ss_pred ccCCCcchhhhhHHHHHH-HHHhhhhhcc
Q 021258 255 FRHPLSWEQCIGSIIVFG-ALYTRSFFKK 282 (315)
Q Consensus 255 f~e~~t~~~~iG~~lvl~-gv~~~~~~k~ 282 (315)
|+...++.+.+.++.+++ ++++..+..+
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~ 35 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIR 35 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999988774 6665554433
No 152
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=33.40 E-value=33 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhc
Q 021258 85 IPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 119 (315)
Q Consensus 85 ~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~ 119 (315)
++.++++...++.++++..|+|.+++++|.++...
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44677888889999999999999999999887764
No 153
>PRK15049 L-asparagine permease; Provisional
Probab=32.91 E-value=1.4e+02 Score=29.28 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=13.1
Q ss_pred CCCCCCC-cccccccccccccc
Q 021258 287 PRPSEHP-MENMHNGASSLMKG 307 (315)
Q Consensus 287 ~~~~~~~-~~~~~~~~~~~~~~ 307 (315)
+...|+| .+.+++++|...|.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
T PRK15049 474 EIHSTAPVVEEDEEKQEIVFKP 495 (499)
T ss_pred cccCCCCcccccccccceeecC
Confidence 3344444 77777777777664
No 154
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=32.66 E-value=1.6e+02 Score=27.39 Aligned_cols=21 Identities=19% Similarity=0.616 Sum_probs=12.1
Q ss_pred chhhhhHHHHHHHHHhhhhhc
Q 021258 261 WEQCIGSIIVFGALYTRSFFK 281 (315)
Q Consensus 261 ~~~~iG~~lvl~gv~~~~~~k 281 (315)
+..+++.++++..+....+.+
T Consensus 288 ~~~ii~g~lll~vl~~~~~~~ 308 (344)
T PRK15432 288 WNDFIAGLVLLGVLVFDGRLR 308 (344)
T ss_pred HHHHHHHHHhhhhhhHHHHHH
Confidence 556666666666555555433
No 155
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=31.56 E-value=41 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=18.7
Q ss_pred CcchhhhhHHHHHHHHHhhhhhcc
Q 021258 259 LSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 259 ~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
+|..|+++..+++.|+.+..+.++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~~ 258 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRRK 258 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999988766544443
No 156
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=31.49 E-value=2.7e+02 Score=24.38 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHH
Q 021258 232 GALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 272 (315)
Q Consensus 232 ~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~ 272 (315)
......++...-.+...+....++|.+++...+.|..++++
T Consensus 122 r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iG 162 (246)
T TIGR00966 122 RFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIG 162 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 33444444455555555566667899999999999888775
No 157
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=31.48 E-value=15 Score=23.06 Aligned_cols=6 Identities=17% Similarity=0.024 Sum_probs=2.9
Q ss_pred HHHhhh
Q 021258 273 ALYTRS 278 (315)
Q Consensus 273 gv~~~~ 278 (315)
|+.+++
T Consensus 22 Gl~IyQ 27 (49)
T PF11044_consen 22 GLSIYQ 27 (49)
T ss_pred HHHHHH
Confidence 444554
No 158
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=31.22 E-value=41 Score=19.34 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=8.1
Q ss_pred CcchhhhhHHHHHHH
Q 021258 259 LSWEQCIGSIIVFGA 273 (315)
Q Consensus 259 ~t~~~~iG~~lvl~g 273 (315)
-.+..++|.+++.++
T Consensus 10 ~~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 10 NSLLLLLGLLLLGLG 24 (34)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445566777444443
No 159
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=31.09 E-value=4.7e+02 Score=24.89 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=3.8
Q ss_pred cCCCChHHH
Q 021258 163 GYDMEIHNQ 171 (315)
Q Consensus 163 ~~~~~~~~~ 171 (315)
+.+.+..+.
T Consensus 270 ~~g~s~~~~ 278 (455)
T TIGR00892 270 DKGVDEYEA 278 (455)
T ss_pred HcCCCHHHH
Confidence 334444443
No 160
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=31.06 E-value=2.8e+02 Score=25.32 Aligned_cols=39 Identities=5% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHH
Q 021258 234 LTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 272 (315)
Q Consensus 234 ~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~ 272 (315)
....++...-.+...+....++|.+++...++|++.+++
T Consensus 152 ~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG 190 (297)
T PRK13021 152 ASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILG 190 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 344556667777888888888999999999999887765
No 161
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=30.71 E-value=31 Score=29.96 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.5
Q ss_pred HHHhhh
Q 021258 273 ALYTRS 278 (315)
Q Consensus 273 gv~~~~ 278 (315)
|.++|.
T Consensus 175 Ga~yYf 180 (218)
T PF14283_consen 175 GAYYYF 180 (218)
T ss_pred ceEEEE
Confidence 344443
No 162
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=30.57 E-value=2e+02 Score=25.45 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=11.1
Q ss_pred chhhhhHHHHHHHHHhh
Q 021258 261 WEQCIGSIIVFGALYTR 277 (315)
Q Consensus 261 ~~~~iG~~lvl~gv~~~ 277 (315)
..+.+|..+.+.-..++
T Consensus 188 ipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 188 IPNVLGFLLGLIQLILY 204 (243)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 45567888777665554
No 163
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=30.55 E-value=65 Score=27.20 Aligned_cols=7 Identities=29% Similarity=0.492 Sum_probs=3.7
Q ss_pred cCCCCCC
Q 021258 307 GSSPRGG 313 (315)
Q Consensus 307 ~~~~~~~ 313 (315)
|-||.|+
T Consensus 172 ~~~~~~~ 178 (186)
T PRK14778 172 SKSDKRG 178 (186)
T ss_pred cccccCC
Confidence 5555554
No 164
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=13 Score=33.37 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=39.8
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 225 SYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 225 ~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
..++++++....-+--.+..+|++++++++++++=+..-..+..+++.|..+-
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 45677777776666667788899999999999887777777777777665543
No 165
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=30.18 E-value=71 Score=24.32 Aligned_cols=59 Identities=3% Similarity=-0.058 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhChHHHHH-HHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhh
Q 021258 219 TSQFFISYTIRTFGALTFAT-IMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTR 277 (315)
Q Consensus 219 ~~~~~~~~~~~~~~a~~~si-~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~ 277 (315)
++...++..+.+.+-+.+.. .+.+.-.++.+.|..+-.|...-..+.|..+++.|+.+.
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34445566666666555443 345567788888887777788889999999999887653
No 166
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.07 E-value=16 Score=23.36 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=11.0
Q ss_pred HHHHHHhhhhhccccC
Q 021258 270 VFGALYTRSFFKKVSE 285 (315)
Q Consensus 270 vl~gv~~~~~~k~~~~ 285 (315)
++.|+++..+.++||+
T Consensus 21 ~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 21 FFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHcccchh
Confidence 4568888887776554
No 167
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.96 E-value=4.9e+02 Score=25.59 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.1
Q ss_pred HHHHHHHhHHHH
Q 021258 106 LALLVTLGCSIF 117 (315)
Q Consensus 106 ~l~l~~~Gv~l~ 117 (315)
|++....|+.++
T Consensus 213 G~i~~~~gi~~f 224 (495)
T KOG2533|consen 213 GVITLVLGIVVF 224 (495)
T ss_pred HHHHHHHHheEE
Confidence 344444444433
No 168
>COG1971 Predicted membrane protein [Function unknown]
Probab=29.93 E-value=86 Score=26.57 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHH-HHH
Q 021258 238 TIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVF-GAL 274 (315)
Q Consensus 238 i~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl-~gv 274 (315)
.+..+.|++....+.++=.-.-.+.+|+|.++.. .|.
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~ 82 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGL 82 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566555555543444677888888854 564
No 169
>PF15471 TMEM171: Transmembrane protein family 171
Probab=29.82 E-value=30 Score=30.79 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=14.5
Q ss_pred chhhhhHHHHHHHHHhhhh
Q 021258 261 WEQCIGSIIVFGALYTRSF 279 (315)
Q Consensus 261 ~~~~iG~~lvl~gv~~~~~ 279 (315)
.+|+.|-.+++.|+.....
T Consensus 161 slQImGPlIVl~GLCFFVV 179 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVV 179 (319)
T ss_pred ehhhhhhHHHHHhhhhhhe
Confidence 3588999999999865543
No 170
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=29.16 E-value=3.5e+02 Score=22.74 Aligned_cols=24 Identities=17% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHHHHHHccCCCcchhhhhHHHHH
Q 021258 248 IVLSCVWFRHPLSWEQCIGSIIVF 271 (315)
Q Consensus 248 ~ils~l~f~e~~t~~~~iG~~lvl 271 (315)
-.+|..++.|..-+...+|..+.+
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLv 155 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLV 155 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888899998864
No 171
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=29 Score=23.51 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhccccCCCC
Q 021258 267 SIIVFGALYTRSFFKKVSEKPR 288 (315)
Q Consensus 267 ~~lvl~gv~~~~~~k~~~~~~~ 288 (315)
+.+.+.|+++..++++||++.+
T Consensus 18 ~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHhcccchhhHH
Confidence 3445567777777776665433
No 172
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=27.64 E-value=3.4e+02 Score=24.55 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=31.0
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHH
Q 021258 231 FGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 272 (315)
Q Consensus 231 ~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~ 272 (315)
.......++...-.+...+....++|-+++...++|...+++
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG 191 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIG 191 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 444555666666666667777778899999999998888764
No 173
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=26.83 E-value=2.7e+02 Score=22.88 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhhHHHHHHHHccC-CCChHHHHHHHHHHHHHHH
Q 021258 105 FLALLVTLGCSIFILFPSGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGY-DMEIHNQIFYTTLCSCVLS 183 (315)
Q Consensus 105 ~~l~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 183 (315)
++++..+.|.=+...++.-.|. ++ ...-..|-.+.++|-++++-....--.+++++ ....+++|||..+.+..++
T Consensus 93 lAVV~AIFGLElLmvSQvcEd~---~S-rrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fWCeFtAsFLf 168 (184)
T PF15108_consen 93 LAVVVAIFGLELLMVSQVCEDA---HS-RRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFWCEFTASFLF 168 (184)
T ss_pred HHHHHHHHhHHHHHHHHHHhcc---hh-hhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHHHHHHHHHHH
Confidence 4555666666555544221111 11 23334677777777665443322222234432 3456888888777665443
No 174
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=26.48 E-value=20 Score=33.53 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhhhHHH--HHHHHHhhh--hhccccCCCCCCCCC
Q 021258 263 QCIGSII--VFGALYTRS--FFKKVSEKPRPSEHP 293 (315)
Q Consensus 263 ~~iG~~l--vl~gv~~~~--~~k~~~~~~~~~~~~ 293 (315)
.+.||++ ++.|+++.. |+|.||++|+-.++.
T Consensus 11 TITgIcvaLlVVGi~Cvv~aYCKTKKQRkklh~hL 45 (404)
T PF02158_consen 11 TITGICVALLVVGIVCVVDAYCKTKKQRKKLHEHL 45 (404)
T ss_dssp -----------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445554 345776655 888888766544443
No 175
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=26.32 E-value=67 Score=30.93 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHhhhhhccccCC
Q 021258 264 CIGSIIVFGALYTRSFFKKVSEK 286 (315)
Q Consensus 264 ~iG~~lvl~gv~~~~~~k~~~~~ 286 (315)
.-|++-++.|+....+.|+++|.
T Consensus 190 ~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 190 FPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc
Confidence 34555566788887777877763
No 176
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=26.17 E-value=4.3e+02 Score=22.84 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=9.4
Q ss_pred HHHHHccCCCChHH
Q 021258 157 QDKLFKGYDMEIHN 170 (315)
Q Consensus 157 ~~~l~~~~~~~~~~ 170 (315)
.++++|+++.+|..
T Consensus 85 ~~~Lyk~~~inp~~ 98 (223)
T PRK00145 85 MMKLYKEKGVNPLG 98 (223)
T ss_pred HHHHHHHhCCCchH
Confidence 34667788888753
No 177
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.51 E-value=83 Score=25.97 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.4
Q ss_pred cccccc
Q 021258 299 NGASSL 304 (315)
Q Consensus 299 ~~~~~~ 304 (315)
.|..++
T Consensus 139 ~Em~pL 144 (163)
T PF06679_consen 139 VEMAPL 144 (163)
T ss_pred ceeccc
Confidence 334444
No 178
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=25.25 E-value=26 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=15.7
Q ss_pred hhHHHHHHH-HHhhhhhccccCCCCCCCCC
Q 021258 265 IGSIIVFGA-LYTRSFFKKVSEKPRPSEHP 293 (315)
Q Consensus 265 iG~~lvl~g-v~~~~~~k~~~~~~~~~~~~ 293 (315)
.|..+...| +.+.-..|||+++|+|.+..
T Consensus 90 ~GLmlL~~~alcW~~~~rkK~~kr~eSq~~ 119 (129)
T PF15099_consen 90 LGLMLLACSALCWKPIIRKKKKKRRESQTA 119 (129)
T ss_pred HHHHHHHhhhheehhhhHhHHHHhhhhhHH
Confidence 344444444 55555556656666665544
No 179
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.03 E-value=1.1e+02 Score=23.33 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=10.9
Q ss_pred hhhhhHHHHH-HHHHhhhhhcc
Q 021258 262 EQCIGSIIVF-GALYTRSFFKK 282 (315)
Q Consensus 262 ~~~iG~~lvl-~gv~~~~~~k~ 282 (315)
..++|.++++ .+.-+..|..+
T Consensus 4 l~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666654 45555555433
No 180
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=24.22 E-value=84 Score=25.15 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=4.6
Q ss_pred hhhHHHHHHH
Q 021258 264 CIGSIIVFGA 273 (315)
Q Consensus 264 ~iG~~lvl~g 273 (315)
+.++.|..+|
T Consensus 9 la~~aLaAAG 18 (137)
T PF12868_consen 9 LAEAALAAAG 18 (137)
T ss_pred HhHHHHHHHH
Confidence 4455554433
No 181
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=23.58 E-value=1.8e+02 Score=21.68 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=4.0
Q ss_pred hhhHHHHH
Q 021258 264 CIGSIIVF 271 (315)
Q Consensus 264 ~iG~~lvl 271 (315)
++|+.+.+
T Consensus 50 f~Gi~lMl 57 (96)
T PF07214_consen 50 FVGIGLML 57 (96)
T ss_pred HHHHHHHH
Confidence 34555554
No 182
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=23.27 E-value=53 Score=30.01 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHhhh
Q 021258 262 EQCIGSIIVFGALYTRS 278 (315)
Q Consensus 262 ~~~iG~~lvl~gv~~~~ 278 (315)
.-..|.++++.++++..
T Consensus 129 iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 129 ILFPGVACFLIAIILGA 145 (336)
T ss_pred EEEccHHHHHHHHHHHH
Confidence 45567777766665544
No 183
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.15 E-value=68 Score=28.70 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=20.5
Q ss_pred CCcchhhhhHHHHHHHHHhhhhhcccc
Q 021258 258 PLSWEQCIGSIIVFGALYTRSFFKKVS 284 (315)
Q Consensus 258 ~~t~~~~iG~~lvl~gv~~~~~~k~~~ 284 (315)
.++..|+++..+++.|+.+..+.+|++
T Consensus 236 ~ls~~Q~isl~~~~~gi~~~~~~~~~~ 262 (269)
T PRK00052 236 GLTMGQILSIPMILLGIILLIWAYRKK 262 (269)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 369999999999999887666554433
No 184
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=22.62 E-value=8.9e+02 Score=25.27 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhc
Q 021258 17 FLVFCNRLMTSAVSAGTLIASRKAIDPVAPVYKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQ 96 (315)
Q Consensus 17 ~lt~~q~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~ 96 (315)
.++.+++.++.+....+++.+++ + .+...-++.|++++..-+........ -....+ ..-|+...-+..++-+
T Consensus 94 ~~~~lk~~lag~~~~~~l~~~~~--~--~~~~~~~i~s~~Yafsg~~~~~~~~~-~fld~~---i~lPL~llgie~~~~~ 165 (843)
T PF09586_consen 94 LLIILKIGLAGLFFYLYLRKFKK--S--RSDWAALIGSLLYAFSGYVIYYSFNI-MFLDAM---ILLPLLLLGIERLLKE 165 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--C--cccHHHHHHHHHHHHHHHHHHHhhhH-HHHHHH---HHHHHHHHHHHHHHhc
Confidence 45677777777776665543332 1 11133345566665543333333221 111111 1236666666777766
Q ss_pred cccC
Q 021258 97 KRYK 100 (315)
Q Consensus 97 ~~~~ 100 (315)
+|..
T Consensus 166 ~k~~ 169 (843)
T PF09586_consen 166 KKWW 169 (843)
T ss_pred CCcc
Confidence 6543
No 185
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=22.03 E-value=4.1e+02 Score=21.15 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHhhhChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHH-HHHHHhhhhhcccc
Q 021258 224 ISYTIRTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIV-FGALYTRSFFKKVS 284 (315)
Q Consensus 224 ~~~~~~~~~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lv-l~gv~~~~~~k~~~ 284 (315)
-.+..|+.++++.++.+. ....+.+.+++. .+|.++- +.|.++.++.++|+
T Consensus 51 ~~~~ak~~G~s~~~~~ga---~iG~IvG~f~~~-------p~G~iiG~~~Ga~l~El~~~~~ 102 (140)
T PF04306_consen 51 GAYGAKRFGASRWGIWGA---IIGGIVGFFVLP-------PLGLIIGPFLGAFLGELLRGKD 102 (140)
T ss_pred HHHHHHhcCCCHHHHHHH---HHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHhCCC
Confidence 356789999999888643 456666666654 2277664 46888888755544
No 186
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=21.48 E-value=77 Score=28.57 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.8
Q ss_pred CcchhhhhHHHHHHHHHhhhhhcc
Q 021258 259 LSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 259 ~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
+|..|++...+++.|+.+..+.+|
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999988876654433
No 187
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.10 E-value=84 Score=22.98 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.3
Q ss_pred chhhhhHH
Q 021258 261 WEQCIGSI 268 (315)
Q Consensus 261 ~~~~iG~~ 268 (315)
+..++|+.
T Consensus 37 ~lvI~~iF 44 (94)
T PF05393_consen 37 FLVICGIF 44 (94)
T ss_pred HHHHHHHH
Confidence 33444443
No 188
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.08 E-value=64 Score=19.91 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=6.8
Q ss_pred HHHHHHHhhhhhccc
Q 021258 269 IVFGALYTRSFFKKV 283 (315)
Q Consensus 269 lvl~gv~~~~~~k~~ 283 (315)
+++.++.+..+.||+
T Consensus 25 ~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 25 IIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHhheEEecc
Confidence 333455555444443
No 189
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=21.08 E-value=7.9e+02 Score=24.05 Aligned_cols=15 Identities=0% Similarity=0.011 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q 021258 168 IHNQIFYTTLCSCVL 182 (315)
Q Consensus 168 ~~~~~~~~~~~~~~~ 182 (315)
|...+..+..++.++
T Consensus 331 P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 331 PVPLVIIQGIITSIA 345 (507)
T ss_pred cHHHHHHHHHHHHHH
Confidence 555555555554443
No 190
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.46 E-value=3.8e+02 Score=20.16 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHhccccChhhHHHHHHHHHhHHHHh
Q 021258 88 MIWGTLIMQKRYKGYDYFLALLVTLGCSIFI 118 (315)
Q Consensus 88 ~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~ 118 (315)
...+.+.+||++++..+.+..++..|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4568889999999999999999988887653
Done!