Query 021258
Match_columns 315
No_of_seqs 119 out of 1366
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 3E-09 1E-13 84.3 6.5 68 215-282 38-106 (137)
2 3b5d_A Multidrug transporter E 98.4 2.4E-06 8.3E-11 65.0 9.5 66 215-280 38-104 (110)
3 3b5d_A Multidrug transporter E 98.1 1.5E-05 5.2E-10 60.5 8.5 70 51-120 34-104 (110)
4 2i68_A Protein EMRE; transmemb 98.0 1.8E-05 6.1E-10 62.4 8.2 68 53-120 36-104 (137)
5 3l1l_A Arginine/agmatine antip 50.1 14 0.00047 33.7 4.2 23 263-285 410-432 (445)
6 2l2t_A Receptor tyrosine-prote 49.3 13 0.00043 22.6 2.5 6 280-285 35-40 (44)
7 2jwa_A Receptor tyrosine-prote 48.8 13 0.00044 22.6 2.5 14 272-285 27-40 (44)
8 3rko_J NADH-quinone oxidoreduc 48.6 1E+02 0.0036 24.7 9.2 23 249-271 128-150 (184)
9 3zux_A Transporter, ASBTNM; tr 36.0 1.9E+02 0.0065 25.4 9.3 13 245-257 272-284 (332)
10 2zxe_G FXYD10, phospholemman-l 30.4 26 0.0009 23.6 1.9 13 266-278 27-39 (74)
11 2knc_B Integrin beta-3; transm 22.2 4.8 0.00016 27.9 -3.0 9 300-308 59-67 (79)
12 3b9w_A Ammonium transporter fa 20.5 4.8E+02 0.017 23.6 14.7 13 259-271 318-330 (407)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.87 E-value=3e-09 Score=84.30 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhhhChHHHHHH-HHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhcc
Q 021258 215 TVATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFKK 282 (315)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~a~~~si~-~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~k~ 282 (315)
++..++++++.+++|+.+++.+..+ ..+.|+++.++|+++|||++++.+++|++++++|++.....++
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566778899999999999999888 8999999999999999999999999999999999988775443
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.36 E-value=2.4e-06 Score=64.98 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhhChHHHHHH-HHHHHHHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhh
Q 021258 215 TVATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 280 (315)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~a~~~si~-~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~gv~~~~~~ 280 (315)
++..++.+++..++|+.+.+++..+ ..+.|+.+.++++++|||++|+.+++|+++++.|++.....
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3455677788889999999999888 89999999999999999999999999999999999877643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.08 E-value=1.5e-05 Score=60.49 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhHhcccCchHHHHHH-hhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 51 CLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 51 ~~~~~~~~~~~~l~~~al~~v~~~~~~~l-~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
+...+++.++..+...+++++|.+.+-.+ ....|+.+.++++++++|++++.|++++.++++|+.+....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33334567788888899999999866444 89999999999999999999999999999999999887654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.02 E-value=1.8e-05 Score=62.43 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhHhcccCchHHHHHH-hhcchHHHHHHHHHHhccccChhhHHHHHHHHHhHHHHhcC
Q 021258 53 VSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 120 (315)
Q Consensus 53 ~~~~~~~~~~l~~~al~~v~~~~~~~l-~~~~p~~~~ll~~l~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 120 (315)
..+++.++..+.+.+++++|.+.+..+ ....|++++++++++++|++++.+++|+.++++|++++...
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 334577788999999999999855444 89999999999999999999999999999999999988664
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=50.10 E-value=14 Score=33.69 Aligned_cols=23 Identities=0% Similarity=-0.224 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHhhhhhccccC
Q 021258 263 QCIGSIIVFGALYTRSFFKKVSE 285 (315)
Q Consensus 263 ~~iG~~lvl~gv~~~~~~k~~~~ 285 (315)
.+.|.++++.|+.++.+.++|++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 44566667777766665555444
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=49.34 E-value=13 Score=22.64 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=2.3
Q ss_pred hccccC
Q 021258 280 FKKVSE 285 (315)
Q Consensus 280 ~k~~~~ 285 (315)
++||.+
T Consensus 35 RRRr~~ 40 (44)
T 2l2t_A 35 RRKSIK 40 (44)
T ss_dssp HTTCSS
T ss_pred hhhhhh
Confidence 333333
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.80 E-value=13 Score=22.60 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=7.3
Q ss_pred HHHHhhhhhccccC
Q 021258 272 GALYTRSFFKKVSE 285 (315)
Q Consensus 272 ~gv~~~~~~k~~~~ 285 (315)
.++.+..|.|||++
T Consensus 27 ~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 27 LGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHhheehhhh
Confidence 45555555555544
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=48.56 E-value=1e+02 Score=24.73 Aligned_cols=23 Identities=4% Similarity=0.003 Sum_probs=19.5
Q ss_pred HHHHHHccCCCcchhhhhHHHHH
Q 021258 249 VLSCVWFRHPLSWEQCIGSIIVF 271 (315)
Q Consensus 249 ils~l~f~e~~t~~~~iG~~lvl 271 (315)
-+|..+|++.+=+.+.+|+.+..
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899998899999999864
No 9
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=36.01 E-value=1.9e+02 Score=25.36 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=8.3
Q ss_pred HHHHHHHHHHccC
Q 021258 245 LVSIVLSCVWFRH 257 (315)
Q Consensus 245 v~~~ils~l~f~e 257 (315)
-.++.++...|++
T Consensus 272 ~lai~lA~~~F~~ 284 (332)
T 3zux_A 272 GLAAALAAAHFAA 284 (332)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCC
Confidence 3666666677864
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=30.37 E-value=26 Score=23.63 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=6.2
Q ss_pred hHHHHHHHHHhhh
Q 021258 266 GSIIVFGALYTRS 278 (315)
Q Consensus 266 G~~lvl~gv~~~~ 278 (315)
+.++.+.|+++..
T Consensus 27 A~vLfi~GI~iil 39 (74)
T 2zxe_G 27 AAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3344445655544
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.21 E-value=4.8 Score=27.91 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=3.6
Q ss_pred ccccccccC
Q 021258 300 GASSLMKGS 308 (315)
Q Consensus 300 ~~~~~~~~~ 308 (315)
+++++-+++
T Consensus 59 ~~NPlyk~~ 67 (79)
T 2knc_B 59 ANNPLYKEA 67 (79)
T ss_dssp TTCCHHHHC
T ss_pred CCCCCccCC
Confidence 334443333
No 12
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=20.48 E-value=4.8e+02 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=9.2
Q ss_pred CcchhhhhHHHHH
Q 021258 259 LSWEQCIGSIIVF 271 (315)
Q Consensus 259 ~t~~~~iG~~lvl 271 (315)
.+..|++|.+.++
T Consensus 318 ~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 318 IAVAQLTGIGITL 330 (407)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 3456999988864
Done!