Query 021258
Match_columns 315
No_of_seqs 119 out of 1366
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 15:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021258.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021258hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 34.7 65 0.0047 24.5 7.7 27 246-272 96-122 (222)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 30.2 22 0.0016 17.2 2.4 20 264-283 2-22 (27)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 23.5 18 0.0013 23.9 1.8 10 272-281 33-42 (91)
4 d1kqfb2 f.23.22.1 (B:246-290) 19.1 45 0.0033 18.8 2.7 25 252-276 5-29 (45)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.0 2.6E+02 0.019 21.4 8.1 54 48-105 3-56 (248)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 11.4 39 0.0028 25.4 1.3 41 232-272 64-104 (199)
7 d2iuba2 f.17.3.1 (A:286-349) M 6.3 1.3E+02 0.0095 17.6 2.0 10 262-271 43-52 (64)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 5.3 2E+02 0.015 18.4 2.7 12 271-282 43-55 (100)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 4.0 7.7E+02 0.056 18.7 15.6 10 270-279 194-203 (447)
10 d1q90a3 f.23.23.1 (A:248-292) 2.9 4.7E+02 0.034 14.2 3.1 31 133-163 1-31 (45)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=34.66 E-value=65 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCCCcchhhhhHHHHHH
Q 021258 246 VSIVLSCVWFRHPLSWEQCIGSIIVFG 272 (315)
Q Consensus 246 ~~~ils~l~f~e~~t~~~~iG~~lvl~ 272 (315)
...+++..+.+.+++....+|.++.++
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 455566778899999999999888765
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.22 E-value=22 Score=17.24 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=12.8
Q ss_pred hhhHHHH-HHHHHhhhhhccc
Q 021258 264 CIGSIIV-FGALYTRSFFKKV 283 (315)
Q Consensus 264 ~iG~~lv-l~gv~~~~~~k~~ 283 (315)
+.|.+++ ++|+.+..|...|
T Consensus 2 vlgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehHHHHHHHHHHHHHHhc
Confidence 3566654 5788887776543
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=23.50 E-value=18 Score=23.86 Aligned_cols=10 Identities=10% Similarity=-0.144 Sum_probs=4.1
Q ss_pred HHHHhhhhhc
Q 021258 272 GALYTRSFFK 281 (315)
Q Consensus 272 ~gv~~~~~~k 281 (315)
.|.+++..-|
T Consensus 33 ~~~~~~~~~r 42 (91)
T d1fftb2 33 ILMAVGFAWK 42 (91)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHhhhee
Confidence 3444444333
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=19.07 E-value=45 Score=18.78 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=15.1
Q ss_pred HHHccCCCcchhhhhHHHHHHHHHh
Q 021258 252 CVWFRHPLSWEQCIGSIIVFGALYT 276 (315)
Q Consensus 252 ~l~f~e~~t~~~~iG~~lvl~gv~~ 276 (315)
+-++....-+...+|+....++..+
T Consensus 5 V~lWKgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777776654333
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.99 E-value=2.6e+02 Score=21.44 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHhhHhcccCchHHHHHHhhcchHHHHHHHHHHhccccChhhHH
Q 021258 48 YKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYF 105 (315)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~~al~~v~~~~~~~l~~~~p~~~~ll~~l~~~~~~~~~~~~ 105 (315)
.+++++|++..+..++....+..=+...+.++ .+.+.++.++++.+|.-..+++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEEEccCccceehh
Confidence 46777888777776665555544433333221 2335566677777666666654
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.36 E-value=39 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHccCCCcchhhhhHHHHHH
Q 021258 232 GALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 272 (315)
Q Consensus 232 ~a~~~si~~~l~~v~~~ils~l~f~e~~t~~~~iG~~lvl~ 272 (315)
-+.....+...-.+........++|.+++.....+..+.++
T Consensus 64 ~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 64 RATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 33333344444444444555567888999888888888765
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.26 E-value=1.3e+02 Score=17.63 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=3.9
Q ss_pred hhhhhHHHHH
Q 021258 262 EQCIGSIIVF 271 (315)
Q Consensus 262 ~~~iG~~lvl 271 (315)
...+|+.+++
T Consensus 43 ~~~~~~~~~~ 52 (64)
T d2iuba2 43 PVVLAVMGVI 52 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.30 E-value=2e+02 Score=18.41 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=4.7
Q ss_pred HHHHH-hhhhhcc
Q 021258 271 FGALY-TRSFFKK 282 (315)
Q Consensus 271 l~gv~-~~~~~k~ 282 (315)
+.++. +..+++|
T Consensus 43 V~~~l~~~~~~~r 55 (100)
T d3dtub2 43 VTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHhhhhh
Confidence 33443 3334434
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=7.7e+02 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.2
Q ss_pred HHHHHHhhhh
Q 021258 270 VFGALYTRSF 279 (315)
Q Consensus 270 vl~gv~~~~~ 279 (315)
++.++.....
T Consensus 194 ~~~~~~~~~~ 203 (447)
T d1pw4a_ 194 ILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.89 E-value=4.7e+02 Score=14.15 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHHHhhhhhHHHHHHHHcc
Q 021258 133 RENTVWGVSLMVGYLGFDGFTSTFQDKLFKG 163 (315)
Q Consensus 133 ~~~~~~G~~~~~~s~~~~a~~~v~~~~l~~~ 163 (315)
++....|.+..+.+.++.-+..++-+|-..|
T Consensus 1 nP~Rv~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!