BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021259
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 127/277 (45%), Gaps = 40/277 (14%)
Query: 19 NWRGYSIRYQYSGSTGPALVLVHGFGANSD---HWRKNIMVLAKSHRVYSIDLIGYGYSD 75
N G RY +G P ++L+HG GA ++ +WR I +LA+ +RV ++D++G+G +
Sbjct: 22 NAGGVETRYLEAGKGQP-VILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTA 80
Query: 76 KPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICNSIGGLVGLQAAVMEPEICRG 134
KP+ YT + L+DF K + D + + NS+GG GL +V+ E+
Sbjct: 81 KPDIE-------YTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNA 133
Query: 135 MILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYND 194
++L+ + ++ I + RP+I Y T E + +++ ND
Sbjct: 134 LVLMGSAGLVVEIHEDL---RPIIN---------------YDF--TREGMVHLVKALTND 173
Query: 195 TSQVTEELVEKILQPGLETGAADVF---LEFICYSGGPLPE-ELLPQVKCPVLIAWGDKD 250
++ + ++ + + +++I GG + E + +V+ P L+ G D
Sbjct: 174 GFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDD 233
Query: 251 PWEPIELGRAYGNFDSVEDF--IVLPNVGHCPQDEAP 285
P+E AY D ++D ++P+ GH E P
Sbjct: 234 KVVPVET--AYKFLDLIDDSWGYIIPHCGHWAMIEHP 268
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 110/283 (38%), Gaps = 45/283 (15%)
Query: 34 GPALVLVHGFGANSD---HWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G ++L+HG G +WR I L+K +RV + D++G+G++D+P + Y+
Sbjct: 25 GQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYN------YSK 78
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQ 150
++W + + ++A + N+ GG + + A+ E M+L+ + +
Sbjct: 79 DSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDV--- 135
Query: 151 PWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELV----EKI 206
T + + E++RN+L D S VT+EL E
Sbjct: 136 -----------------TEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEAS 178
Query: 207 LQPGLETGAADVF-------LEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR 259
+QPG + + +F ++ + S +E + + LI G +D P+
Sbjct: 179 IQPGFQESFSSMFPEPRQRWIDALASS-----DEDIKTLPNETLIIHGREDQVVPLSSSL 233
Query: 260 AYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 302
G V GH Q E N LV F TP
Sbjct: 234 RLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNEANTP 276
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 109/283 (38%), Gaps = 45/283 (15%)
Query: 34 GPALVLVHGFGANSD---HWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G ++L+HG G +WR I L+K +RV + D++G+G++D+P + Y+
Sbjct: 25 GQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYN------YSK 78
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQ 150
++W + + ++A + NS GG + + A+ E M+L+ +
Sbjct: 79 DSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDV--- 135
Query: 151 PWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELV----EKI 206
T + + E++RN+L D S VT+EL E
Sbjct: 136 -----------------TEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEAS 178
Query: 207 LQPGLETGAADVF-------LEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR 259
+QPG + + +F ++ + S +E + + LI G +D P+
Sbjct: 179 IQPGFQESFSSMFPEPRQRWIDALASS-----DEDIKTLPNETLIIHGREDQVVPLSSSL 233
Query: 260 AYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 302
G V GH Q E N LV F TP
Sbjct: 234 RLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNEANTP 276
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT- 89
GS +VL HGFG + W+ + L +RV D +G G + NP D+FD Y+
Sbjct: 16 GSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSN 71
Query: 90 FETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH-IK 148
E ++ L +D+ + F+ +S+ ++G+ A++ P++ +++++ S R ++ +
Sbjct: 72 LEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVD 131
Query: 149 KQPWYGRP-LIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQ-----CYNDTSQVTEEL 202
Q + + L + F+ + N A L + +A + +I Q +N + +
Sbjct: 132 YQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSV 191
Query: 203 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AY 261
+ I Q + ++LP V P I KD P+ + +
Sbjct: 192 GQTIFQSDM--------------------RQILPFVTVPCHILQSVKDLAVPVVVSEYLH 231
Query: 262 GNFDSVEDFIVLPNVGHCPQDEAPHLVNPLV 292
N V+P+ GH PQ +P V P++
Sbjct: 232 ANLGCESVVEVIPSDGHLPQLSSPDSVIPVI 262
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT- 89
GS +VL HGFG + W+ + L +RV D +G G + NP D+FD Y+
Sbjct: 14 GSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSN 69
Query: 90 FETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH-IK 148
E ++ L +D+ + F+ +S+ ++G+ A++ P++ +++++ S R ++ +
Sbjct: 70 LEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVD 129
Query: 149 KQPWYGRP-LIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQ-----CYNDTSQVTEEL 202
Q + + L + F+ + N A L + +A + +I Q +N + +
Sbjct: 130 YQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSV 189
Query: 203 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AY 261
+ I Q + ++LP V P I KD P+ + +
Sbjct: 190 GQTIFQSDM--------------------RQILPFVTVPCHILQSVKDLAVPVVVSEYLH 229
Query: 262 GNFDSVEDFIVLPNVGHCPQDEAPHLVNPLV 292
N V+P+ GH PQ +P V P++
Sbjct: 230 ANLGCESVVEVIPSDGHLPQLSSPDSVIPVI 260
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT- 89
GS +VL HGFG + W+ + L +RV D +G G + NP D+FD Y+
Sbjct: 32 GSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSN 87
Query: 90 FETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH-IK 148
E ++ L +D+ + F+ +S+ ++G+ A++ P++ +++++ S R ++ +
Sbjct: 88 LEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVD 147
Query: 149 KQPWYGRP-LIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQ-----CYNDTSQVTEEL 202
Q + + L + F+ + N A L + +A + +I Q +N + +
Sbjct: 148 YQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSV 207
Query: 203 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AY 261
+ I Q + ++LP V P I KD P+ + +
Sbjct: 208 GQTIFQSDM--------------------RQILPFVTVPCHILQSVKDLAVPVVVSEYLH 247
Query: 262 GNFDSVEDFIVLPNVGHCPQDEAPHLVNPLV 292
N V+P+ GH PQ +P V P++
Sbjct: 248 ANLGCESVVEVIPSDGHLPQLSSPDSVIPVI 278
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G +GPAL+L+HGF N W + +LA + V DL GYG S KP D Y+F
Sbjct: 22 GGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAP--DHANYSF 79
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
AS + + + ++ + ++ GG G + A+ P+ + +L+I
Sbjct: 80 RAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDI 129
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G +GPAL+L+HGF N W + +LA + V DL GYG S KP D Y+F
Sbjct: 22 GGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAP--DHANYSF 79
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
AS + + + ++ + + GG G + A+ P+ + +L+I
Sbjct: 80 RAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDI 129
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
GS +++ GFG + W + HRV D +G G+SD R + + T
Sbjct: 17 GSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDL---RAYDLNRYQTL 73
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 141
+ +A + D C+ + + F+ +S+G L+G+ A++ PE+ ++++ S
Sbjct: 74 DGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPS 124
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 24 SIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFF 83
++ + GS LVL HGFG + W + + + +RV DL+ G NP DFF
Sbjct: 10 ALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAG---SVNP-DFF 65
Query: 84 D-KPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
D + + T + + L + D ++ +S+ ++G+ A++ PE+ +IL+ S
Sbjct: 66 DFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASP 125
Query: 143 RMLH 146
R L+
Sbjct: 126 RFLN 129
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 129/306 (42%), Gaps = 42/306 (13%)
Query: 7 SEEPYEVKNSMWNWRGYSIRYQYSGSTGPALVLVHGFGANSDHWRK-NIMVLAKSH-RVY 64
S E EV+N + R SGS GP L+L+HG G ++ W ++++ R+
Sbjct: 18 SMEDVEVENETGK---DTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIV 74
Query: 65 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD---QAFFICNSIGGLVG 121
++DL +G + NP D + ET A + + + + D I +++GG +
Sbjct: 75 ALDLRSHGETKVKNPEDL------SAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAIA 128
Query: 122 LQAAV--MEPE---ICRGMILLNISLRMLHIKKQPWYGRP-LIRSFQNLLRNTAAGKLFY 175
+ A + P +C ++ ++ L+ + GRP +S +N + +
Sbjct: 129 VHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIR 188
Query: 176 KMVATSESVRNILCQCYND--TSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEE 233
+ + S+ + QC T ++ EK G G +++FL C P+P+
Sbjct: 189 NLESARVSMVGQVKQCEGKPYTWRIELAKTEKYWD-GWFRGLSNLFLS--C----PIPKL 241
Query: 234 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVE 293
LL + DKD + +G+ G F VLP GH ++AP V V
Sbjct: 242 LL-----LAGVDRLDKD----LTIGQMQGKF----QMQVLPQCGHAVHEDAPDKVAEAVA 288
Query: 294 SFVTRH 299
+F+ RH
Sbjct: 289 TFLIRH 294
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 33 TGPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE 91
+GPA+ L HGF + WR I LA++ +RV ++D+ GYG S P + Y E
Sbjct: 53 SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-----EIEEYCME 107
Query: 92 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
++ F + QA FI + GG++ A+ PE R + LN
Sbjct: 108 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLN 155
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 33 TGPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE 91
+GPA+ L HGF + WR I LA++ +RV ++D+ GYG S P + Y E
Sbjct: 38 SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-----EIEEYCME 92
Query: 92 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
++ F + QA FI + GG++ A+ PE R + LN
Sbjct: 93 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLN 140
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 130/316 (41%), Gaps = 52/316 (16%)
Query: 7 SEEPYEVKNSMWNWRGYSIRYQYSGSTGPALVLVHGFGANSDHWRK-NIMVLAKSH-RVY 64
S E EV+N + R SGS GP L+L+HG G ++ W ++++ R+
Sbjct: 14 SMEDVEVENETGK---DTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIV 70
Query: 65 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD---QAFFICNSIGGLVG 121
++DL +G + NP D + ET A + + + + D I +S+GG +
Sbjct: 71 ALDLRSHGETKVKNPEDL------SAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIA 124
Query: 122 LQAAV--MEPE---ICRGMILLNISLRMLHIKKQPWYGRP-LIRSFQNLLRNTAAGKLFY 175
+ A + P +C ++ ++ L+ + GRP +S +N + +
Sbjct: 125 VHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIR 184
Query: 176 KMVATSESVRNILCQCYNDTS------------QVTEELVEKILQPGLETGAADVFLEFI 223
+ + S+ + QC TS ++ EK G G +++FL
Sbjct: 185 NLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWD-GWFRGLSNLFLS-- 241
Query: 224 CYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDE 283
C P+P+ LL + DKD + +G+ G F VLP GH ++
Sbjct: 242 C----PIPKLLL-----LAGVDRLDKD----LTIGQMQGKF----QMQVLPQCGHAVHED 284
Query: 284 APHLVNPLVESFVTRH 299
AP V V +F+ RH
Sbjct: 285 APDKVAEAVATFLIRH 300
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + + P +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEF 144
Query: 154 GRPLIRSFQN 163
R L ++F+
Sbjct: 145 ARELFQAFRT 154
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 33 TGPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE 91
+GPA+ L HGF + WR I LA++ +RV ++D+ GYG S P + Y E
Sbjct: 257 SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-----EIEEYCME 311
Query: 92 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
++ F + QA FI + GG++ A+ PE R + LN
Sbjct: 312 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLN 359
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 24 SIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFF 83
++ + GS LVL HGFG + W + + + +RV DL+ G NP DFF
Sbjct: 10 ALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAG---SVNP-DFF 65
Query: 84 D-KPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
D + + T + + L + D ++ +++ ++G+ A++ PE+ +IL+ S
Sbjct: 66 DFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASP 125
Query: 143 RMLH 146
R L+
Sbjct: 126 RFLN 129
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + V ++ + + G +G A PE +G+ + + + P +
Sbjct: 85 VRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEF 144
Query: 154 GRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 191
R ++F R G+ ++ + + +L +C
Sbjct: 145 ARETFQAF----RTADVGREL--IIDQNAFIEGVLPKC 176
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPR 80
G + + GS GPAL L HGF + WR I LA++ RV +ID+ GYG S P
Sbjct: 245 GIRLHFVEMGS-GPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPP-- 301
Query: 81 DFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
+ Y E ++ F + QA FI + G++ A+ PE R + LN
Sbjct: 302 ---EIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLN 357
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 117/292 (40%), Gaps = 46/292 (15%)
Query: 32 STGPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
+ G ++L HG + W + I VLA + +RV ++D +G+ S KP Y+F
Sbjct: 44 ANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQ------YSF 97
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKK 149
+ A+ + + + +A I +S GG + + A++ P ++L+N I L
Sbjct: 98 QQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGLEDWKALG 157
Query: 150 QPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYN------DTSQVTEELV 203
PW RS + R + ++E +R Y + + +
Sbjct: 158 VPW------RSVDDWYRR--------DLQTSAEGIRQYQQATYYAGEWRPEFDRWVQXQA 203
Query: 204 EKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKD------PWEPIEL 257
G E+ A + L + P+ E L +++ P L+ G+KD P EL
Sbjct: 204 GXYRGKGRESVAWNSALTYDXIFTQPVVYE-LDRLQXPTLLLIGEKDNTAIGKDAAPAEL 262
Query: 258 GRAYGNFDSV----------EDFIVLPNVGHCPQDEAPHLVN-PLVESFVTR 298
GN+ + + P++GH PQ +AP + L+E T+
Sbjct: 263 KARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQAPERFHQALLEGLQTQ 314
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + + P +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEF 144
Query: 154 GRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 191
R ++F R G+ ++ + + +L +C
Sbjct: 145 ARETFQAF----RTADVGREL--IIDQNAFIEGVLPKC 176
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 29 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 81
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + + P +
Sbjct: 82 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEF 141
Query: 154 GRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 191
R ++F R G+ ++ + + +L +C
Sbjct: 142 ARETFQAF----RTADVGREL--IIDQNAFIEGVLPKC 173
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + + P +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEF 144
Query: 154 GRPLIRSFQN 163
R ++F+
Sbjct: 145 ARETFQAFRT 154
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
GS +VL HGFG + W + + L + HRV DL+ G NP F + +
Sbjct: 16 GSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAG---SVNPDHFDFRRYDNL 72
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH 146
+ + L + + F+ +S+ ++G+ A++ P++ ++L+ S R L+
Sbjct: 73 DAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLN 128
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
GS +VL HGFG + W + + L + HRV DL+ G NP F + +
Sbjct: 14 GSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAG---SVNPDHFDFRRYDNL 70
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH 146
+ + L + + F+ +S+ ++G+ A++ P++ ++L+ S R L+
Sbjct: 71 DAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLN 126
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + P +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 144
Query: 154 GRPLIRSFQN 163
R ++F+
Sbjct: 145 ARETFQAFRT 154
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + P +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 144
Query: 154 GRPLIRSFQN 163
R ++F+
Sbjct: 145 ARETFQAFRT 154
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + P +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 144
Query: 154 GRPLIRSFQN 163
R ++F+
Sbjct: 145 ARETFQAFRT 154
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 29 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 81
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
L+ F + + ++ + + G +G A PE +G+ + + P +
Sbjct: 82 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 141
Query: 154 GRPLIRSFQN 163
R ++F+
Sbjct: 142 ARETFQAFRT 151
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 37 LVLVHGFGANSDHWRKNIMVL-AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG + S +RK + V A RV + DL G+G SDKP D YTF
Sbjct: 49 FLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPT-----DDAVYTFGFHRR 103
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGR 155
L F + ++ +C GG++GL V P++ +I++N + L + P G
Sbjct: 104 SLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA---LAVGLSPGKGF 160
Query: 156 PLIRSFQNLLRNTAAGKLFYKMV 178
R F + GKL + +
Sbjct: 161 ESWRDFVANSPDLDVGKLMQRAI 183
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 135
L+ F + + ++ + + G +G A PE +G+
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G ++ +HG +S WR I +A SHR + DLIG G SDKP+ FFD
Sbjct: 32 GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------H 84
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 135
L+ F + + ++ + + G +G A PE +G+
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 107/279 (38%), Gaps = 29/279 (10%)
Query: 37 LVLVHGFGANSDHWRKNIMVLA--KSHRVYSIDLIGYGYSDKPNPRDFFDKP--FYTFET 92
L+++HG + ++ NI LA V D +G G N D P F+T +
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCG-----NSTHLPDAPADFWTPQL 111
Query: 93 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN--ISLRMLHIKKQ 150
+ + + C + ++ + S GG++G + AV +P + + N S+R+
Sbjct: 112 FVDEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAG 171
Query: 151 PWYGRPLIRSFQNLLRNTAAGKLFYK--MVATSESVRNILCQCYNDTSQVTEELVEKILQ 208
+ + L R+ AAG + + + A +E R +C+ + + + +
Sbjct: 172 DLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAE 231
Query: 209 PGL-ETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKD-----PWEPIELGRAYG 262
P + T + G + LP V PVL+ G+ D W+P
Sbjct: 232 PTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVTAPVLVIAGEHDEATPKTWQPF------- 284
Query: 263 NFDSVEDFI--VLPNVGHCPQDEAPHLVNPLVESFVTRH 299
D + D V P HC E P +V F+ +H
Sbjct: 285 -VDHIPDVRSHVFPGTSHCTHLEKPEEFRAVVAQFLHQH 322
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 24 SIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFF 83
+I +Q G LVL+HG+G N++ WR L+ ++ +DL G+G S R F
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRS-----RGFG 57
Query: 84 DKPFYTFETWASQLNDFCKDVVK---DQAFFICNSIGGLVGLQAAVMEPEICRGMI 136
A L D + V++ D+A ++ S+GGLV Q A+ PE R ++
Sbjct: 58 ----------ALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALV 103
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYT 89
G+ L L HGFG + W + +++RV DL+ G NP D+FD + T
Sbjct: 16 GTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAG---SVNP-DYFDFNRYTT 71
Query: 90 FETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH 146
+ + L + + ++ +S+ ++G+ A++ PE+ +IL+ S R L+
Sbjct: 72 LDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRFLN 128
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 9 EPYEVKNSMWNWRGYSIRYQYSGST-GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSID 67
+P E++ G S+ Y+ +G+ P ++ +HG +S WR + +++ + D
Sbjct: 3 KPIEIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPD 62
Query: 68 LIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 126
LIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 63 LIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLAA 114
Query: 127 MEPEICRGMILLN 139
P+ RG+ +
Sbjct: 115 RRPDFVRGLAFME 127
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 9 EPYEVKNSMWNWRGYSIRYQYSGST-GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSID 67
+P E++ G S+ Y+ +G+ P ++ +HG +S WR + +++ + D
Sbjct: 3 KPIEIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPD 62
Query: 68 LIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 126
LIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 63 LIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLAA 114
Query: 127 MEPEICRGMILLN 139
P+ RG+ +
Sbjct: 115 RRPDFVRGLAFME 127
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 9 EPYEVKNSMWNWRGYSIRYQYSGST-GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSID 67
+P E++ G S+ Y+ +G+ P ++ +HG +S WR + +++ + D
Sbjct: 3 KPIEIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPD 62
Query: 68 LIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 126
LIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 63 LIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLAA 114
Query: 127 MEPEICRGMILLN 139
P+ RG+ +
Sbjct: 115 RRPDFVRGLAFME 127
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 20/115 (17%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFET 92
GP +VL+HGF + WR I LA + +RV +ID GYG S K Y +
Sbjct: 33 GPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK-----------YRVQK 81
Query: 93 WASQLNDFCKDVV-------KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
A ++ + DVV +QAF + + G V A + P+ C G++ +++
Sbjct: 82 -AYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISV 135
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 20/115 (17%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFET 92
GP +VL+HGF + WR I LA + +RV +ID GYG S K Y +
Sbjct: 27 GPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK-----------YRVQK 75
Query: 93 WASQLNDFCKDVV-------KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
A ++ + DVV +QAF + + G V A + P+ C G++ +++
Sbjct: 76 -AYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISV 129
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 24 SIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFF 83
+I +Q G LVL+HG+G N++ WR L+ ++ +DL G+G S R F
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRS-----RGFG 57
Query: 84 DKPFYTFETWASQLNDFCKDVVK---DQAFFICNSIGGLVGLQAAVMEPEICRGMI 136
A L D + V++ D+A ++ ++GGLV Q A+ PE + ++
Sbjct: 58 ----------ALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALV 103
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G + P ++ +HG G N+ W I+ L + ++DL G+G+S ++ P
Sbjct: 78 GGSAPRVIFLHGGGQNAHTWDTVIVGLGEP--ALAVDLPGHGHSAWREDGNY--SPQLNS 133
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 141
ET A L +++ F + S+GGL ++ A M P++ ++L++++
Sbjct: 134 ETLAPVL----RELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVT 180
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 40/237 (16%)
Query: 22 GYSIRYQYSGSTGPALVLVHG-FGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNP 79
G + YQ +G A++L+ G G+ + + L K V + D GYG+S +P
Sbjct: 11 GVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS-RPPD 69
Query: 80 RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
RDF P FE A D K + + + S GG+ L AA P M++
Sbjct: 70 RDF---PADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVI-- 124
Query: 140 ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNIL--CQCYNDTSQ 197
W + +++ + SE R L Y+ ++
Sbjct: 125 ------------WGANAYVTDEDSMIYEG-----IRDVSKWSERTRKPLEALYGYDYFAR 167
Query: 198 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP 254
E+ V+ I Q F G + LLP+V+CP LI G+KDP P
Sbjct: 168 TCEKWVDGIRQ-------------FKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 31/230 (13%)
Query: 37 LVLVHGFGANSDHW---RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
+VL+HG G + W +NI VLA+ V ++D GYG+SDK F++ Y
Sbjct: 59 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNR--YA---- 112
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPW 152
A L + + + NS+GG ++ A+ P ++L+ L + P
Sbjct: 113 AMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPT 172
Query: 153 YGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKIL----Q 208
G + F + T E++ L D + +T ELV++
Sbjct: 173 EGVKRLSKF--------------SVAPTRENLEAFLRVMVYDKNLITPELVDQRFALAST 218
Query: 209 PGLETGAADVFLEFIC--YSGGPLPEELLPQVKCPVLIAWGDKDPWEPIE 256
P T + F + G + E+ +++ PVL+ WG +D P++
Sbjct: 219 PESLTATRAMGKSFAGADFEAGMMWREVY-RLRQPVLLIWGREDRVNPLD 267
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 40/237 (16%)
Query: 22 GYSIRYQYSGSTGPALVLVHG-FGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNP 79
G + YQ +G A++L+ G G+ + + L K V + D GYG+S +P
Sbjct: 11 GVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS-RPPD 69
Query: 80 RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
RDF P FE A D K + + + S GG+ L AA P M++
Sbjct: 70 RDF---PADFFERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVI-- 124
Query: 140 ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNIL--CQCYNDTSQ 197
W + +++ + SE R L Y+ ++
Sbjct: 125 ------------WGANAYVTDEDSMIYEG-----IRDVSKWSERTRKPLEALYGYDYFAR 167
Query: 198 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP 254
E+ V+ I Q F G + LLP+V+CP LI G+KDP P
Sbjct: 168 TCEKWVDGIRQ-------------FKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 35 PALVLVHGFGANS---DHWRKNIMVLAKSHRVYSIDLIGYGYSDKPN--PRDFFDKPFYT 89
PA+VL+HG G + +WR I LA++ V + DLIG+G S+ P P
Sbjct: 30 PAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMR 89
Query: 90 FETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 130
E +N F +++ + NS+GG V LQ V PE
Sbjct: 90 VEQILGLMNHFG----IEKSHIVGNSMGGAVTLQLVVEAPE 126
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 40/237 (16%)
Query: 22 GYSIRYQYSGSTGPALVLVHG-FGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNP 79
G + YQ +G A++L+ G G+ + + L K V + D GYG+S +P
Sbjct: 11 GVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS-RPPD 69
Query: 80 RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
RDF P FE A D K + + + + GG+ L AA P M++
Sbjct: 70 RDF---PADFFERDAKDAVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVI-- 124
Query: 140 ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNIL--CQCYNDTSQ 197
W + +++ + SE R L Y+ ++
Sbjct: 125 ------------WGANAYVTDEDSMIYEG-----IRDVSKWSERTRKPLEALYGYDYFAR 167
Query: 198 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP 254
E+ V+ I Q F G + LLP+V+CP LI G+KDP P
Sbjct: 168 TCEKWVDGIRQ-------------FKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 31/230 (13%)
Query: 37 LVLVHGFGANSDHW---RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
+VL+HG G + W +NI VLA+ V ++D GYG+SDK F++ Y
Sbjct: 39 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNR--YA---- 92
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPW 152
A L + + + N++GG ++ A+ P ++L+ L + P
Sbjct: 93 AMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPT 152
Query: 153 YGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKIL----Q 208
G + F + T E++ L D + +T ELV++
Sbjct: 153 EGVKRLSKFS--------------VAPTRENLEAFLRVMVYDKNLITPELVDQRFALAST 198
Query: 209 PGLETGAADVFLEFIC--YSGGPLPEELLPQVKCPVLIAWGDKDPWEPIE 256
P T + F + G + E+ +++ PVL+ WG +D P++
Sbjct: 199 PESLTATRAMGKSFAGADFEAGMMWREVY-RLRQPVLLIWGREDRVNPLD 247
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP L+L+HGF W + LA+ +V DL GYG+SD P D P YT
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPE-SDEQHTP-YTK 87
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
A QL + + + ++ G V + A+ P + +L+I
Sbjct: 88 RAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP L+L+HGF W + LA+ +V DL GYG+SD P D P YT
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPE-SDEQHTP-YTK 87
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
A QL + + + + G V + A+ P + +L+I
Sbjct: 88 RAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP L+L+HGF W + LA+ +V DL GYG+SD P D P YT
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPE-SDEQHTP-YTK 87
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
A QL + + + + G V + A+ P + +L+I
Sbjct: 88 RAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP L+L+HGF W + LA+ +V DL GYG+SD P D P YT
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPE-SDEQHTP-YTK 87
Query: 91 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
A QL + + + + G V + A+ P + +L+I
Sbjct: 88 RAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 19 NWRGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKS----HRVYSIDLIGYGYS 74
N R + + Q++ S +VLVHG + D N+ VLA+ H + +D+ +G S
Sbjct: 4 NIRAQTAQNQHNNSP---IVLVHGLFGSLD----NLGVLARDLVNDHNIIQVDVRNHGLS 56
Query: 75 DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 134
PR+ P + A L D + D+A FI +S+GG + + P+
Sbjct: 57 ----PRE----PVMNYPAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDK 108
Query: 135 MILLNISLRMLHIKKQ 150
++ ++I+ H+++
Sbjct: 109 LVAIDIAPVDYHVRRH 124
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP ++LVHGFG W + + LAK V + DL G G S+ P K Y+
Sbjct: 27 GGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPP-------KTGYSG 79
Query: 91 ETWASQLNDFCKDVVKDQAF-FICNSIG 117
E A L+ + D+ F + + IG
Sbjct: 80 EQVAVYLHKLARQFSPDRPFDLVAHDIG 107
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP ++LVHGFG W + + LAK V + DL G G S+ P K Y+
Sbjct: 27 GGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPP-------KTGYSG 79
Query: 91 ETWASQLNDFCKDVVKDQAF-FICNSIG 117
E A L+ + D+ F + + IG
Sbjct: 80 EQVAVYLHKLARQFSPDRPFDLVAHDIG 107
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 33 TGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFET 92
+GP + HG +NS + + L+ ++D G+G SDKP + Y
Sbjct: 67 SGPLXLFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKP-------ETGYEAND 119
Query: 93 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 141
+A + + + + A + +S+G + AA P++ R ++ ++ +
Sbjct: 120 YADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFT 168
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 31 GSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTF 90
G GP ++LVHGFG W + + LAK V + DL G G S+ P K Y+
Sbjct: 27 GGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPP-------KTGYSG 79
Query: 91 ETWASQLNDFCKDVVKDQAF-FICNSIG 117
E A L+ + D+ F + + IG
Sbjct: 80 EQVAVYLHKLARQFSPDRPFDLVAHDIG 107
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 37 LVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG S +RK I V A+S RV + D G+G SDKP D+ YTFE +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRN 104
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
L + + + GG +GL + +P + +I++N L
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXL 151
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 22 GYSIRYQYSGST-GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSD-KPNP 79
G S+ Y+ G+ P L L + G W + L + RV D G+G S P P
Sbjct: 14 GASLAYRLDGAAEKPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGP 73
Query: 80 RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 139
YT + + + +A F+ S+GG+VG A+ P+ ++L N
Sbjct: 74 --------YTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLAN 125
Query: 140 IS 141
S
Sbjct: 126 TS 127
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 37 LVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG S +RK I V A+S RV + D G+G SDKP D+ YTFE +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRN 104
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
L + + + GG +GL + +P + +I++N L
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 37 LVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG S +RK I V A+S RV + D G+G SDKP D+ YTFE +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRN 104
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
L + + + GG +GL + +P + +I++N L
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 37 LVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG S +RK I V A+S RV + D G+G SDKP D+ YTFE +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRN 104
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
L + + + GG +GL + +P + +I++N L
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 37 LVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG S +RK I V A+S RV + D G+G SDKP D+ YTFE +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRN 104
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
L + + + GG +GL + +P + +I++N L
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 6 SSEEPYEVKNSMWNWRGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNI-MVLAKSHRVY 64
SSE P+ + G +I Y GS P L L HG +S WR I V+A +R
Sbjct: 4 SSEFPFAKRTV--EVEGATIAYVDEGSGQPVLFL-HGNPTSSYLWRNIIPYVVAAGYRAV 60
Query: 65 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 124
+ DLIG G S KP+ Y + + + F + D + + G ++G +
Sbjct: 61 APDLIGXGDSAKPDIE-------YRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRH 113
Query: 125 AVMEPE 130
A + P+
Sbjct: 114 ARLNPD 119
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 37 LVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWAS 95
+ +HG S +RK I V A+S RV + D G+G SDKP D+ YTFE +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRN 104
Query: 96 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
L + + + GG +GL + +P + +I++N L
Sbjct: 105 FLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 19 NWRGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKS----HRVYSIDLIGYGYS 74
N R + + Q++ S +VLVHG + D N+ VLA+ H + +D+ +G S
Sbjct: 4 NIRAQTAQNQHNNSP---IVLVHGLFGSLD----NLGVLARDLVNDHNIIQVDVRNHGLS 56
Query: 75 DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 134
PR+ P + A L D D+A FI +S+GG + + P+
Sbjct: 57 ----PRE----PVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDK 108
Query: 135 MILLNISLRMLHIKKQ 150
++ ++I+ H+++
Sbjct: 109 LVAIDIAPVDYHVRRH 124
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 27 YQYSGSTGPALVLVHGFGANSDHW-RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDK 85
Y TG +VL+HGF + W R++ +L +RV + D G+G S +P
Sbjct: 17 YYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG----- 71
Query: 86 PFYTFETWASQLNDFCKDVVKDQAFFICNSIG 117
Y ++T+A+ LN + + A + S+G
Sbjct: 72 --YDYDTFAADLNTVLETLDLQDAVLVGFSMG 101
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 33 TGPALVLVHGFGANSDHW-RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE 91
TG +VL+HGF + W R++ +L +RV + D G+G S +P Y ++
Sbjct: 22 TGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-------YDYD 74
Query: 92 TWASQLNDFCKDVVKDQAFFICNSIG 117
T+A+ LN + + A + S+G
Sbjct: 75 TFAADLNTVLETLDLQDAVLVGFSMG 100
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 33 TGPALVLVHGFGANSDHW-RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE 91
TG +VL+HGF + W R++ +L +RV + D G+G S +P Y ++
Sbjct: 22 TGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-------YDYD 74
Query: 92 TWASQLNDFCKDVVKDQAFFICNSIG 117
T+A+ LN + + A + S G
Sbjct: 75 TFAADLNTVLETLDLQDAVLVGFSTG 100
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 102/281 (36%), Gaps = 31/281 (11%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
G L+L+HG+ W K +LA + V + DL GYG D P Y+
Sbjct: 25 GAPLLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYG--DSSRPASVPHHINYSKRVM 82
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI--SLRMLHIKKQ- 150
A + + +Q + + + G V + A+ P + + LL+I + +M Q
Sbjct: 83 AQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTTDQE 142
Query: 151 ---PWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTS----QVTEELV 203
+Y + NL Y + R L + D S Q E +
Sbjct: 143 FATAYYHWFFLIQPDNLPETLIGANPEYYL-------RKCLEKWGKDFSAFHPQALAEYI 195
Query: 204 EKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGN 263
QP + + + ++ ++ CPVL+ WG+K +GR Y
Sbjct: 196 RCFSQPAVIHATCEDYRAAATIDLEHDELDMKQKISCPVLVLWGEKGI-----IGRKYDV 250
Query: 264 FDSVEDFIV------LPNVGHCPQDEAPHLVNPLVESFVTR 298
+ + + LP GH +EAP + +F+T
Sbjct: 251 LATWRERAIDVSGQSLP-CGHFLPEEAPEETYQAIYNFLTH 290
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 20/239 (8%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVL-AKSHRVYSIDLIGYGYSDKPNPR 80
G I Y+ GS P +V HG+ N+D W ++ L A+ +RV + D G+G S +P
Sbjct: 8 GTQIYYKDWGSGQP-IVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSG 66
Query: 81 DFFDKPFYTFETWASQLNDFCKDV-VKDQAFFICNSIGGLVGLQAAVM-EPEICRGMILL 138
+ D T+A L + + ++D F ++ GG V + + ++
Sbjct: 67 NDMD-------TYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLIS 119
Query: 139 NISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGK-LFYKMVATSESVRNILCQCYNDTSQ 197
+ ML + P G P+ F + + + A + YK +A+ ++
Sbjct: 120 AVPPLMLKTEANPG-GLPM-EVFDGIRQASLADRSQLYKDLASGP-----FFGFNQPGAK 172
Query: 198 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIE 256
+ +V+ G+ G + + +S E+ L ++ P L+ GD D PIE
Sbjct: 173 SSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTED-LKKIDVPTLVVHGDADQVVPIE 230
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 32 STGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE 91
+ P +VL+ G G + +W + VL + ++V D G G NP + Y+
Sbjct: 13 ADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGN----NPDTLAED--YSIA 66
Query: 92 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 144
A++L+ + + +++G LVG Q A+ P +I +N LR+
Sbjct: 67 QXAAELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVNGWLRI 119
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 25 IRYQYSGSTGPALVLVHGFGANSDHW-RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFF 83
+ Y+ G+ P +VL+HGF + W R++ +L +RV + D G+G S +P
Sbjct: 15 LYYEDHGAGQP-VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG--- 70
Query: 84 DKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 117
Y ++T+A+ LN + + A + S+G
Sbjct: 71 ----YDYDTFAADLNTVLETLDLQDAVLVGFSMG 100
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Query: 35 PALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
P ++ +HG W++ + LA + +RV + DL G+G S Y+ T+
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSH-----LEMVTSYSSLTF 81
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
+Q++ +++ + +S+G ++ A + P+ + +IL+ + L KK+
Sbjct: 82 LAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAV 141
Query: 154 GRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQP 209
+ + + + L +T +F + + +R + + S + L ++I QP
Sbjct: 142 NQ--LTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYI---LAQRITQP 192
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 107 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 165
D+A + NS+GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 166 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 223
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 224 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 278
PL L ++K I WG D + P++ G + N D V GH
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGH 265
Query: 279 CPQDEAPHLVNPLVESFVTRHA 300
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 43/271 (15%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETW 93
P LVL+HG +S W NI + +R Y++D+I G +K P + T +
Sbjct: 67 APPLVLLHGALFSSTXWYPNIADWSSKYRTYAVDII--GDKNKSIPENVSG----TRTDY 120
Query: 94 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY 153
A+ L D ++ +++ I S+GGL + PE + +L+ + L
Sbjct: 121 ANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFL-------- 172
Query: 154 GRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGL-- 211
F + A G + S V L ND V + K + G+
Sbjct: 173 ------PFHHDFYKYALG------LTASNGVETFLNWXXND-QNVLHPIFVKQFKAGVXW 219
Query: 212 ETGA------ADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDP-WEPIELGRAYGNF 264
+ G+ AD F +E L + P+L+ G+ + ++P +F
Sbjct: 220 QDGSRNPNPNADGFPYVFT-------DEELRSARVPILLLLGEHEVIYDPHSALHRASSF 272
Query: 265 DSVEDFIVLPNVGHCPQDEAPHLVNPLVESF 295
+ V+ N GH E P VN V F
Sbjct: 273 VPDIEAEVIKNAGHVLSXEQPTYVNERVXRF 303
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 20/234 (8%)
Query: 22 GYSIRYQYSG-STGPALVLVHGFGANSDHWRKNIMV-LAKSHRVYSIDLIGYGYSDKPNP 79
G +I Y+ G G +V HG+ ++D W ++ L+ +RV + D G+G SD+P+
Sbjct: 8 GTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPST 67
Query: 80 RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVMEP-EICRGMIL 137
+ +T+A+ + + + A I +S GG V A EP + + +++
Sbjct: 68 G-------HDMDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLV 120
Query: 138 LNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKL-FYKMVATSESVRNILCQCYNDTS 196
+ M+ P G PL F AA + FY V + + +
Sbjct: 121 SAVPPVMVKSDTNP-DGLPL-EVFDEFRAALAANRAQFYIDVPSGP-----FYGFNREGA 173
Query: 197 QVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKD 250
V++ L++ G+ GAA+ E I + L ++ PVL+A G D
Sbjct: 174 TVSQGLIDHWWLQGM-MGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDD 226
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 107 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 165
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 166 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 223
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 224 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 278
PL L ++K I WG D + P++ G + N D V GH
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGH 265
Query: 279 CPQDEAPHLVNPLVESFVTRHA 300
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 107 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 165
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 101 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 150
Query: 166 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 223
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 151 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 203
Query: 224 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 278
PL L ++K I WG D + P++ G + N D V GH
Sbjct: 204 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGH 262
Query: 279 CPQDEAPHLVNPLVESFVTRHA 300
Q E N LV F+ RHA
Sbjct: 263 WAQWEHADEFNRLVIDFL-RHA 283
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 112/281 (39%), Gaps = 38/281 (13%)
Query: 25 IRYQYSGSTGPALVLVHGFGANSDHWRKNIM-VLAKSHRVYSIDLIGYGYS-DKPNPRDF 82
I + S G L+++HG ++ + + + K RV + DL G+G S D +P
Sbjct: 15 IAVRESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDP--- 71
Query: 83 FDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
D+ Y+ E +A + + + + A S+GG +G++ PE +
Sbjct: 72 -DRS-YSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-----------M 118
Query: 143 RMLHIKKQPWYGRPLI-RSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYN----DTSQ 197
R L I P R + + F++ AG+ + R+ + + D
Sbjct: 119 RGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVA 178
Query: 198 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIEL 257
T+ +I+ F +F +GG +++ + + P+ + G +P+ ++
Sbjct: 179 RTDGRARRIM-----------FEKFGSGTGGN-QRDIVAEAQLPIAVVNGRDEPFVELDF 226
Query: 258 --GRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 296
+GN + V+ N GH P EAP + + F+
Sbjct: 227 VSKVKFGNLWEGKTH-VIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 27 YQYSGSTGPALVLVHGFGANSDHW-RKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDK 85
Y+ GS P +VL+HG+ + W R+ +LA+ +RV + D G+G S K N
Sbjct: 17 YEDQGSGQP-VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTG----- 70
Query: 86 PFYTFETWASQLNDFCKDVVKDQAFFICNSIG 117
Y ++T+A+ L+ + + + S+G
Sbjct: 71 --YDYDTFAADLHTVLETLDLRDVVLVGFSMG 100
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 24 SIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDF 82
I Y G+ GP L+L+HG+ W K I LA+ + V DL G+G S+KP+ D
Sbjct: 20 KIHYVREGA-GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDL 77
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 111/281 (39%), Gaps = 38/281 (13%)
Query: 25 IRYQYSGSTGPALVLVHGFGANSDHWRKNIM-VLAKSHRVYSIDLIGYGYS-DKPNPRDF 82
I + S G L+++HG ++ + + + K RV + DL G+G S D +P
Sbjct: 15 IAVRESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDP--- 71
Query: 83 FDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
D+ Y+ E +A + + + + A S+GG +G++ PE +
Sbjct: 72 -DRS-YSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-----------M 118
Query: 143 RMLHIKKQPWYGRPLI-RSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYN----DTSQ 197
R L I P R + + F++ AG+ + R+ + + D
Sbjct: 119 RGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVA 178
Query: 198 VTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIEL 257
T+ +I+ F +F +GG +++ + + P+ + G P+ ++
Sbjct: 179 RTDGRARRIM-----------FEKFGSGTGGN-QRDIVAEAQLPIAVVNGRDGPFVELDF 226
Query: 258 --GRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 296
+GN + V+ N GH P EAP + + F+
Sbjct: 227 VSKVKFGNLWEGKTH-VIDNAGHAPFREAPAEFDAYLARFI 266
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 30 SGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT 89
+G ++L HGFG + + WR + L K V D +G G SD F K + +
Sbjct: 24 TGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDL---ESFSTKRYSS 80
Query: 90 FETWASQLNDF 100
E +A + +
Sbjct: 81 LEGYAKDVEEI 91
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 27 YQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKP 86
Y+ + T LV +HGF ++S + +I ++ V +IDL G+G + + D
Sbjct: 9 YEANVETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHG--EDQSSMD----- 61
Query: 87 FYTFETW----ASQLNDFCKDVVKDQAFFICN-SIGGLVGLQAAV 126
ETW + L D D KD++ + S+GG V L A+
Sbjct: 62 ----ETWNFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAI 102
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 27/202 (13%)
Query: 107 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 165
D+A + NS+GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 166 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 223
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 224 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 278
PL L ++K I WG D + P++ G + N D V G
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGQ 265
Query: 279 CPQDEAPHLVNPLVESFVTRHA 300
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 10 PYEVKNSMWNWRGYSIRYQYSGSTGP--ALVLV-HGFGANSDHWRK-NIMVLAKSHRVYS 65
PY+ + N G + +Y TG AL+ V HG G +S + + M++ V++
Sbjct: 15 PYQDLPHLVNADGQYLFCRYWAPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFA 74
Query: 66 IDLIGYGYSDKPNPRDFFDKPFYTF-ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 124
D +G+G S+ F+ F ++ KD F + +S+GG + +
Sbjct: 75 HDHVGHGQSEG---ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILT 131
Query: 125 AVMEPEICRGMILLN 139
A P GM+L++
Sbjct: 132 AAERPGHFAGMVLIS 146
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 10 PYEVKNSMWNWRGYSI--RYQYSGSTGPALVLV-HGFGANSDHWRK-NIMVLAKSHRVYS 65
PY+ + N G + RY T AL+ V HG G +S + + M++ V++
Sbjct: 32 PYQDLPHLVNADGQYLFCRYWKPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFA 91
Query: 66 IDLIGYGYSDKPNPRDFFDKPFYTF-ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 124
D +G+G S+ F+ F ++ KD F + +S+GG + +
Sbjct: 92 HDHVGHGQSEG---ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILT 148
Query: 125 AVMEPEICRGMILLN 139
A P GM+L++
Sbjct: 149 AAERPGHFAGMVLIS 163
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 36/127 (28%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFET 92
GP ++ +HGF WR ++ LA + +R + DL GYG +T
Sbjct: 31 GPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG------------------DT 72
Query: 93 WASQLNDFCK--------DVV---------KDQAFFICNSIGGLVGLQAAVMEPEICRGM 135
+ LND K DVV +++ F + + G L+ + P+ + +
Sbjct: 73 TGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKAL 132
Query: 136 ILLNISL 142
+ L++
Sbjct: 133 VNLSVHF 139
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 10 PYEVKNSMWNWRGYSI--RYQYSGSTGPALVLV-HGFGANSDHWRK-NIMVLAKSHRVYS 65
PY+ + N G + RY T AL+ V HG G +S + + M++ V++
Sbjct: 33 PYQDLPHLVNADGQYLFCRYWKPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFA 92
Query: 66 IDLIGYGYSDKPNPRDFFDKPFYTF-ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 124
D +G+G S+ F+ F ++ KD F + +S+GG + +
Sbjct: 93 HDHVGHGQSEG---ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILT 149
Query: 125 AVMEPEICRGMILLN 139
A P GM+L++
Sbjct: 150 AAERPGHFAGMVLIS 164
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 36/127 (28%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFET 92
GP ++ +HGF WR ++ LA + +R + DL GYG +T
Sbjct: 31 GPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG------------------DT 72
Query: 93 WASQLNDFCK--------DVV---------KDQAFFICNSIGGLVGLQAAVMEPEICRGM 135
+ LND K DVV +++ F + + G L+ + P+ + +
Sbjct: 73 TGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKAL 132
Query: 136 ILLNISL 142
+ L++
Sbjct: 133 VNLSVHF 139
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 27/202 (13%)
Query: 107 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 165
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 166 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 223
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 224 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 278
PL L ++K I WG D + P++ G + N D V G
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGQ 265
Query: 279 CPQDEAPHLVNPLVESFVTRHA 300
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 25/154 (16%)
Query: 21 RGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNP- 79
+G + Y G TG ++ HG +S WR + A R+ + DLIG G SDK +P
Sbjct: 17 KGRRMAYIDEG-TGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPS 75
Query: 80 ----------RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 129
RD+ D + + + D+ + + G +G A
Sbjct: 76 GPERYAYAEHRDYLDALWEALD-------------LGDRVVLVVHDWGSALGFDWARRHR 122
Query: 130 EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 163
E +G+ + + P R L ++F++
Sbjct: 123 ERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 156
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 25/154 (16%)
Query: 21 RGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNP- 79
+G + Y G TG ++ HG +S WR + A R+ + DLIG G SDK +P
Sbjct: 17 KGRRMAYIDEG-TGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPS 75
Query: 80 ----------RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 129
RD+ D + + + D+ + + G +G A
Sbjct: 76 GPERYAYAEHRDYLDALWEALD-------------LGDRVVLVVHDWGSALGFDWARRHR 122
Query: 130 EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 163
E +G+ + + P R L ++F++
Sbjct: 123 ERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 156
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 25/154 (16%)
Query: 21 RGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNP- 79
+G + Y G TG ++ HG +S WR + A R+ + DLIG G SDK +P
Sbjct: 17 KGRRMAYIDEG-TGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPS 75
Query: 80 ----------RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 129
RD+ D + + + D+ + + G +G A
Sbjct: 76 GPERYAYAEHRDYLDALWEALD-------------LGDRVVLVVHDWGSALGFDWARRHR 122
Query: 130 EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 163
E +G+ + + P R L ++F++
Sbjct: 123 ERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 156
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 25/154 (16%)
Query: 21 RGYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNP- 79
+G + Y G TG ++ HG +S WR + A R+ + DLIG G SDK +P
Sbjct: 16 KGRRMAYIDEG-TGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPS 74
Query: 80 ----------RDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 129
RD+ D + + + D+ + + G +G A
Sbjct: 75 GPERYAYAEHRDYLDALWEALD-------------LGDRVVLVVHDWGSALGFDWARRHR 121
Query: 130 EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 163
E +G+ + + P R L ++F++
Sbjct: 122 ERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 155
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 27/202 (13%)
Query: 107 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 165
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 166 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 223
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 224 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 278
PL L ++K I WG D + P++ G + N D V G
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGA 265
Query: 279 CPQDEAPHLVNPLVESFVTRHA 300
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDK-----PNPRDFFDKPFY 88
G A+V HG +S WR + L R+ + DLIG G SDK P+ + ++ +
Sbjct: 30 GDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQRDF 89
Query: 89 TFETW-ASQLNDFCKDVVKD 107
F W A L D V+ D
Sbjct: 90 LFALWDALDLGDHVVLVLHD 109
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 34 GPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDK-----PNPRDFFDKPFY 88
G A+V HG +S WR + L R+ + DLIG G SDK P+ + ++ +
Sbjct: 28 GDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQRDF 87
Query: 89 TFETW-ASQLNDFCKDVVKD 107
F W A L D V+ D
Sbjct: 88 LFALWDALDLGDHVVLVLHD 107
>pdb|3L80|A Chain A, Crystal Structure Of Smu.1393c From Streptococcus Mutans
Ua159
pdb|3L80|B Chain B, Crystal Structure Of Smu.1393c From Streptococcus Mutans
Ua159
Length = 292
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 42 GFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNP-----RDFFDKPFYTFETWASQ 96
GF + +D++ I L S + +ID GYS N RD+ + FE +
Sbjct: 51 GFFSTADNFANIIDKLPDSIGILTIDAPNSGYSPVSNQANVGLRDWVNAILXIFEHF--- 107
Query: 97 LNDFCKDVVKDQAFFIC-NSIGGLVGLQAAVMEPEICRGMILL 138
K Q++ +C +SIGG LQ + C G I L
Sbjct: 108 ---------KFQSYLLCVHSIGGFAALQIXNQSSKACLGFIGL 141
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 21 RGYSIRYQY----SGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYG 72
RG I +Y + PAL+ HG+ +NS W + +A V ++D+ G G
Sbjct: 91 RGARIHAKYIKPKTEGKHPALIRFHGYSSNSGDWNDKLNYVAAGFTVVAMDVRGQG 146
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 100/281 (35%), Gaps = 68/281 (24%)
Query: 54 IMVLAKSHRVYSID-----LIGYGYSDKPNPRDFFDKPF----YTF-------------E 91
+ VL + +YS+ L+ +G++ P F + F YT E
Sbjct: 34 LQVLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAE 93
Query: 92 TWASQLNDFCKDVVK---------DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
AS +D+ D+V D F S+GG + + AA PE G++ +N +L
Sbjct: 94 MAASTASDWTADIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAAL 153
Query: 143 RMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEEL 202
RM + L + A +E S + E
Sbjct: 154 RM---------------------ESPDLAALAFNPDAPAE--------LPGIGSDIKAEG 184
Query: 203 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AY 261
V+++ P A + G + E LLP+VKCP LI +D P G Y
Sbjct: 185 VKELAYPVTPVPAIKHLITI-----GAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIY 239
Query: 262 GNFDSVE-DFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRHA 300
S E + + L N H D L+ +F+ +H+
Sbjct: 240 NGIGSTEKELLWLENSYHVATLDNDKELILERSLAFIRKHS 280
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 99/280 (35%), Gaps = 68/280 (24%)
Query: 54 IMVLAKSHRVYSID-----LIGYGYSDKPNPRDFFDKPF----YTF-------------E 91
+ VL + +YS+ L+ +G++ P F + F YT E
Sbjct: 36 LQVLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAE 95
Query: 92 TWASQLNDFCKDVVK---------DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 142
AS +D+ D+V D F S+GG + + AA PE G++ +N +L
Sbjct: 96 MAASTASDWTADIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAAL 155
Query: 143 RMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEEL 202
RM + L + A +E S + E
Sbjct: 156 RM---------------------ESPDLAALAFNPDAPAE--------LPGIGSDIKAEG 186
Query: 203 VEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AY 261
V+++ P A + G + E LLP+VKCP LI +D P G Y
Sbjct: 187 VKELAYPVTPVPAIKHLITI-----GAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIY 241
Query: 262 GNFDSVE-DFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRH 299
S E + + L N H D L+ +F+ +H
Sbjct: 242 NGIGSTEKELLWLENSYHVATLDNDKELILERSLAFIRKH 281
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 25 IRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKSHRVYSIDLIGYGYSDKPNPRDFFD 84
+R GS GP L+L+HG+ W + LA+ + V DL GYG S + +
Sbjct: 23 LRVAVKGS-GPPLLLLHGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDE----E 77
Query: 85 KPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 140
Y+ A + + ++ I + G VG + A+ P+ + L +
Sbjct: 78 GADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTV 133
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
Length = 271
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKP 77
G I ++ GS P L HG+ ++D W + L+ + +R + D G+G SD+P
Sbjct: 8 GTQIYFKDWGSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
Length = 271
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKP 77
G I ++ GS P L HG+ ++D W + L+ + +R + D G+G SD+P
Sbjct: 8 GTQIYFKDWGSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKP 77
G I ++ GS P L HG+ ++D W + L+ + +R + D G+G SD+P
Sbjct: 8 GTQIYFKDWGSGKPVL-FSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKP 77
G I ++ GS P L HG+ ++D W + L+ + +R + D G+G SD+P
Sbjct: 8 GTQIYFKDWGSGKPVL-FSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 22 GYSIRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLA-KSHRVYSIDLIGYGYSDKP 77
G I ++ GS P L HG+ ++D W + L+ + +R + D G+G SD+P
Sbjct: 8 GTQIYFKDWGSGKPVL-FSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 25 IRYQYSGSTGPALVLVHGFGANSDHWRKNIMVLAKS-HRVYSIDLIGYGYSDKP 77
I Y+ G TG +VL+HG+ + W + L ++ +RV + D G+G S +P
Sbjct: 19 IYYEDHG-TGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQP 71
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 99/287 (34%), Gaps = 94/287 (32%)
Query: 35 PALVLVHGFGANSDHWRKNIMVLAKSHRVYSI-----DLIGYGYSDKPNPRDFFDKPFYT 89
P +++HGF +S+ ++I+ + ++ + D+ G+G SD F D +
Sbjct: 28 PLCIIIHGFTGHSE--ERHIVAVQETLNEIGVATLRADMYGHGKSDGK----FEDHTLFK 81
Query: 90 FETWASQLNDFCK--DVVKDQAFFICNSIGGLVGLQAAVME----------------PEI 131
+ T + D+ K D V D + +S GGL + AA ME PEI
Sbjct: 82 WLTNILAVVDYAKKLDFVTD-IYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEI 140
Query: 132 CRGMILLNISLRMLHIKKQ--PWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILC 189
R LL + +I + W GR KL V ++++R
Sbjct: 141 ARTGELLGLKFDPENIPDELDAWDGR----------------KLKGNYVRVAQTIR---- 180
Query: 190 QCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDK 249
E+ V+K +P VLI GD+
Sbjct: 181 ---------VEDFVDKYTKP--------------------------------VLIVHGDQ 199
Query: 250 DPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 296
D P E A+ + +P HC D LV V+ F+
Sbjct: 200 DEAVPYEASVAFSKQYKNCKLVTIPGDTHC-YDHHLELVTEAVKEFM 245
>pdb|2LD6|A Chain A, Solution Structure Of Histidine Phosphotransfer Domain Of
Chea
Length = 139
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 137 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 194
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 17 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 76
Query: 195 TSQVTEELVEKI 206
++T +L++KI
Sbjct: 77 EIKITSDLLDKI 88
>pdb|1TQG|A Chain A, Chea Phosphotransferase Domain From Thermotoga Maritima
Length = 105
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 137 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 194
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 18 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 77
Query: 195 TSQVTEELVEKI 206
++T +L++KI
Sbjct: 78 EIKITSDLLDKI 89
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 237 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 285
+++ L+ WG KD PI L + Y + S ++ GH E P
Sbjct: 145 KIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKP 193
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 235 LPQVKCPVLIAWGDKDPWEPIELGRAYGN-FDSVEDFIVLPNVGH 278
L Q+ P LI GD+D P E +A+ N S +F+V+ H
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASH 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,126,621
Number of Sequences: 62578
Number of extensions: 438874
Number of successful extensions: 1120
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 145
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)