Query 021260
Match_columns 315
No_of_seqs 177 out of 1053
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08760 Cyt_b561_FRRS1_like Eu 100.0 2.1E-33 4.5E-38 243.9 17.4 157 133-291 32-190 (191)
2 KOG4293 Predicted membrane pro 100.0 4.3E-30 9.4E-35 245.8 4.1 294 2-299 61-376 (403)
3 smart00665 B561 Cytochrome b-5 99.9 6E-27 1.3E-31 190.8 9.7 124 139-263 1-129 (129)
4 cd08766 Cyt_b561_ACYB-1_like P 99.9 2E-24 4.4E-29 177.5 10.3 133 133-266 4-139 (144)
5 PF03188 Cytochrom_B561: Eukar 99.9 4E-24 8.6E-29 175.9 11.0 127 139-266 1-133 (137)
6 cd08554 Cyt_b561 Eukaryotic cy 99.9 9.7E-24 2.1E-28 172.4 10.1 126 137-263 2-131 (131)
7 PLN02351 cytochromes b561 fami 99.9 3.9E-23 8.5E-28 181.0 13.1 130 135-266 48-181 (242)
8 PLN02810 carbon-monoxide oxyge 99.9 3.9E-22 8.5E-27 173.3 14.6 133 133-266 43-178 (231)
9 cd08764 Cyt_b561_CG1275_like N 99.9 1.8E-22 3.9E-27 175.8 11.9 133 133-265 20-157 (214)
10 cd08761 Cyt_b561_CYB561D2_like 99.9 2E-22 4.3E-27 173.8 11.6 132 133-265 17-157 (183)
11 PLN02680 carbon-monoxide oxyge 99.9 7.2E-22 1.6E-26 173.0 14.7 133 133-266 43-178 (232)
12 cd08762 Cyt_b561_CYBASC3 Verte 99.9 2.3E-22 4.9E-27 169.3 10.6 131 135-266 33-169 (179)
13 cd08765 Cyt_b561_CYBRD1 Verteb 99.9 2.2E-22 4.8E-27 166.3 10.2 132 134-266 9-146 (153)
14 cd08763 Cyt_b561_CYB561 Verteb 99.9 9.9E-22 2.2E-26 161.4 10.9 131 135-266 5-139 (143)
15 KOG1619 Cytochrome b [Energy p 99.8 1.1E-20 2.3E-25 163.9 7.5 133 133-266 51-187 (245)
16 smart00664 DoH Possible catech 99.8 1.2E-17 2.6E-22 139.1 14.4 120 1-125 16-146 (148)
17 PF03351 DOMON: DOMON domain; 99.7 5.5E-16 1.2E-20 124.9 11.3 95 1-100 18-124 (124)
18 cd00241 CDH_cytochrome Cellobi 99.4 1.4E-11 2.9E-16 105.4 12.8 121 1-127 42-176 (184)
19 PF10348 DUF2427: Domain of un 99.3 4.5E-12 9.8E-17 99.0 8.4 90 132-229 13-102 (105)
20 PF04526 DUF568: Protein of un 98.4 2.6E-06 5.5E-11 65.8 10.1 91 24-122 1-101 (101)
21 KOG3568 Dopamine beta-monooxyg 98.3 2.5E-06 5.3E-11 81.1 7.5 93 1-100 58-158 (603)
22 PF13301 DUF4079: Protein of u 97.2 0.0043 9.3E-08 52.9 10.1 60 203-266 112-172 (175)
23 cd08554 Cyt_b561 Eukaryotic cy 96.7 0.007 1.5E-07 49.0 7.2 94 170-266 2-95 (131)
24 PF03188 Cytochrom_B561: Eukar 96.5 0.043 9.4E-07 44.5 10.7 93 172-267 1-95 (137)
25 smart00665 B561 Cytochrome b-5 96.5 0.034 7.3E-07 44.9 9.9 95 172-269 1-96 (129)
26 cd08760 Cyt_b561_FRRS1_like Eu 96.4 0.034 7.3E-07 48.1 10.2 98 133-231 65-164 (191)
27 cd08761 Cyt_b561_CYB561D2_like 96.3 0.054 1.2E-06 46.5 10.7 97 167-265 18-116 (183)
28 cd08763 Cyt_b561_CYB561 Verteb 96.2 0.08 1.7E-06 43.7 10.9 95 169-266 6-100 (143)
29 cd08764 Cyt_b561_CG1275_like N 96.0 0.082 1.8E-06 46.5 10.2 98 167-265 21-118 (214)
30 PF00033 Cytochrom_B_N: Cytoch 95.6 0.036 7.7E-07 47.1 6.6 95 171-265 10-127 (188)
31 PLN02680 carbon-monoxide oxyge 95.2 0.35 7.6E-06 43.0 11.5 93 169-265 46-138 (232)
32 cd08766 Cyt_b561_ACYB-1_like P 95.1 0.36 7.7E-06 39.9 10.4 93 168-264 6-98 (144)
33 COG2717 Predicted membrane pro 94.0 0.77 1.7E-05 40.2 10.6 138 144-289 50-191 (209)
34 cd08762 Cyt_b561_CYBASC3 Verte 93.7 3 6.5E-05 35.7 13.4 97 168-266 33-130 (179)
35 cd08765 Cyt_b561_CYBRD1 Verteb 92.2 0.4 8.6E-06 40.0 5.8 95 133-228 44-144 (153)
36 PF13172 PepSY_TM_1: PepSY-ass 91.7 0.23 4.9E-06 30.3 2.9 31 237-267 2-32 (34)
37 PF10067 DUF2306: Predicted me 91.4 0.82 1.8E-05 35.4 6.5 32 237-268 2-33 (103)
38 PLN02351 cytochromes b561 fami 91.1 3.2 6.9E-05 37.2 10.6 93 169-266 50-142 (242)
39 PF10348 DUF2427: Domain of un 90.8 2.6 5.6E-05 32.8 8.8 88 166-265 14-102 (105)
40 PLN02810 carbon-monoxide oxyge 90.7 3.4 7.3E-05 36.7 10.3 93 169-265 46-138 (231)
41 PF13301 DUF4079: Protein of u 90.6 5.2 0.00011 34.1 11.2 62 204-270 79-143 (175)
42 KOG1619 Cytochrome b [Energy p 90.3 2.1 4.6E-05 38.1 8.7 95 133-228 85-185 (245)
43 PF01292 Ni_hydr_CYTB: Prokary 89.9 5.8 0.00013 33.3 11.2 94 171-267 8-124 (182)
44 TIGR02125 CytB-hydogenase Ni/F 89.2 3.8 8.2E-05 35.5 9.7 28 240-267 112-139 (211)
45 PF00033 Cytochrom_B_N: Cytoch 88.9 2 4.3E-05 36.2 7.6 129 136-265 8-174 (188)
46 COG3038 CybB Cytochrome B561 [ 88.7 5.2 0.00011 34.3 9.8 62 170-232 13-74 (181)
47 PRK11513 cytochrome b561; Prov 88.1 2.2 4.7E-05 36.4 7.1 62 204-265 41-104 (176)
48 PF04238 DUF420: Protein of un 86.7 14 0.00031 30.0 10.8 46 138-190 6-51 (133)
49 PF13706 PepSY_TM_3: PepSY-ass 86.4 0.86 1.9E-05 28.4 2.7 29 237-265 1-29 (37)
50 PF01794 Ferric_reduct: Ferric 86.0 3.4 7.4E-05 32.3 6.9 49 211-260 1-53 (125)
51 PF13630 SdpI: SdpI/YhfL prote 84.0 1.6 3.4E-05 31.4 3.7 36 233-268 16-51 (76)
52 PF01292 Ni_hydr_CYTB: Prokary 83.7 12 0.00027 31.2 9.7 126 136-263 6-166 (182)
53 COG5658 Predicted integral mem 83.4 8.4 0.00018 33.6 8.4 43 234-276 39-81 (204)
54 PF10951 DUF2776: Protein of u 82.9 3.8 8.2E-05 37.6 6.3 85 175-266 156-244 (347)
55 TIGR01583 formate-DH-gamm form 82.2 28 0.00061 30.2 11.6 30 237-266 101-130 (204)
56 PRK10179 formate dehydrogenase 81.0 12 0.00025 33.0 8.8 30 237-266 106-135 (217)
57 PRK05419 putative sulfite oxid 80.8 32 0.0007 30.1 11.3 47 239-289 145-191 (205)
58 PF13703 PepSY_TM_2: PepSY-ass 79.1 7.8 0.00017 28.8 6.1 31 235-266 56-86 (88)
59 PF10856 DUF2678: Protein of u 77.4 8.8 0.00019 30.3 5.9 56 205-266 28-83 (118)
60 TIGR01191 ccmC heme exporter p 74.9 54 0.0012 28.2 12.2 65 132-196 8-72 (184)
61 PRK05771 V-type ATP synthase s 68.6 53 0.0012 33.9 11.1 48 216-263 450-498 (646)
62 PF03929 PepSY_TM: PepSY-assoc 66.7 11 0.00024 21.7 3.3 24 241-264 2-25 (27)
63 PRK10588 hypothetical protein; 66.3 17 0.00037 27.8 5.1 73 178-257 19-93 (97)
64 TIGR02112 cyd_oper_ybgE cyd op 65.6 19 0.00041 27.4 5.3 50 203-257 38-89 (93)
65 PF10129 OpgC_C: OpgC protein; 64.9 80 0.0017 30.1 10.7 54 138-192 186-239 (358)
66 PF09600 Cyd_oper_YbgE: Cyd op 64.5 24 0.00053 26.1 5.6 75 178-259 4-80 (82)
67 CHL00070 petB cytochrome b6 61.3 40 0.00086 29.8 7.3 86 181-271 45-144 (215)
68 PF12811 BaxI_1: Bax inhibitor 61.2 73 0.0016 29.2 9.2 55 242-299 209-271 (274)
69 PF01102 Glycophorin_A: Glycop 60.5 12 0.00026 29.9 3.6 16 274-289 69-84 (122)
70 PF13789 DUF4181: Domain of un 59.8 56 0.0012 25.4 7.3 63 238-303 25-88 (110)
71 PRK10639 formate dehydrogenase 59.4 45 0.00097 29.1 7.4 30 237-266 104-133 (211)
72 PRK03735 cytochrome b6; Provis 59.3 42 0.0009 29.8 7.1 86 181-271 53-152 (223)
73 PF13706 PepSY_TM_3: PepSY-ass 58.2 10 0.00022 23.5 2.2 24 204-227 4-27 (37)
74 COG4097 Predicted ferric reduc 58.0 1.8E+02 0.004 28.1 11.7 26 200-225 71-96 (438)
75 PRK13673 hypothetical protein; 57.8 95 0.0021 24.7 8.3 82 170-266 31-112 (118)
76 PF10361 DUF2434: Protein of u 56.2 95 0.0021 28.6 8.9 92 204-295 42-146 (296)
77 CHL00070 petB cytochrome b6 56.0 35 0.00077 30.1 6.1 93 136-232 32-141 (215)
78 PRK03735 cytochrome b6; Provis 55.1 38 0.00082 30.1 6.2 93 136-232 40-149 (223)
79 PF02628 COX15-CtaA: Cytochrom 53.5 66 0.0014 29.6 7.9 90 168-265 66-155 (302)
80 PF14358 DUF4405: Domain of un 51.9 44 0.00094 23.1 5.0 41 142-182 7-54 (64)
81 PF15176 LRR19-TM: Leucine-ric 51.8 40 0.00086 25.9 4.9 26 269-294 14-39 (102)
82 COG2717 Predicted membrane pro 51.8 19 0.0004 31.6 3.6 44 135-178 111-155 (209)
83 PF09990 DUF2231: Predicted me 51.6 58 0.0013 24.8 6.1 48 174-221 6-56 (104)
84 PF08507 COPI_assoc: COPI asso 51.5 1.3E+02 0.0028 24.3 9.3 52 236-294 57-109 (136)
85 PLN02631 ferric-chelate reduct 50.1 63 0.0014 33.7 7.7 64 203-267 187-255 (699)
86 TIGR02901 QoxD cytochrome aa3 48.9 1.2E+02 0.0025 23.1 7.5 72 171-254 7-81 (94)
87 PF08114 PMP1_2: ATPase proteo 48.0 22 0.00049 22.5 2.5 16 289-304 27-42 (43)
88 PF10856 DUF2678: Protein of u 47.3 76 0.0016 25.1 6.0 55 171-230 29-84 (118)
89 PRK10209 acid-resistance membr 47.1 1.8E+02 0.004 24.8 9.2 18 209-226 51-68 (190)
90 PF01654 Bac_Ubq_Cox: Bacteria 46.6 2.3E+02 0.0051 27.8 10.7 154 137-301 10-205 (436)
91 COG4858 Uncharacterized membra 45.8 2E+02 0.0043 24.9 9.9 86 165-263 91-184 (226)
92 cd00284 Cytochrome_b_N Cytochr 45.3 98 0.0021 26.9 7.2 87 180-271 33-133 (200)
93 PF02009 Rifin_STEVOR: Rifin/s 45.3 22 0.00047 33.1 3.2 12 292-303 276-287 (299)
94 PF03729 DUF308: Short repeat 45.1 35 0.00077 23.5 3.7 20 245-264 26-45 (72)
95 PF15330 SIT: SHP2-interacting 44.6 43 0.00093 26.1 4.3 25 278-302 5-30 (107)
96 TIGR03145 cyt_nit_nrfE cytochr 44.0 3.9E+02 0.0084 27.7 12.5 62 133-194 165-228 (628)
97 PRK10929 putative mechanosensi 43.8 1.7E+02 0.0038 32.3 10.1 13 209-221 629-641 (1109)
98 PF14800 DUF4481: Domain of un 43.6 71 0.0015 29.6 6.1 34 242-275 64-97 (308)
99 PLN02844 oxidoreductase/ferric 43.5 90 0.0019 32.8 7.7 127 139-267 112-259 (722)
100 PRK11281 hypothetical protein; 43.5 2.1E+02 0.0046 31.7 10.7 12 208-219 649-660 (1113)
101 PF06341 DUF1056: Protein of u 43.0 97 0.0021 21.7 5.3 31 238-268 5-35 (63)
102 TIGR02125 CytB-hydogenase Ni/F 42.7 2.2E+02 0.0047 24.4 9.1 55 137-192 8-71 (211)
103 PRK11513 cytochrome b561; Prov 42.5 2.1E+02 0.0045 24.2 9.8 62 168-229 40-104 (176)
104 COG3247 HdeD Uncharacterized c 42.3 2.2E+02 0.0049 24.5 11.7 72 179-270 81-153 (185)
105 COG3658 Cytochrome b [Energy p 42.3 75 0.0016 26.9 5.5 25 206-230 35-59 (192)
106 PF03729 DUF308: Short repeat 40.0 63 0.0014 22.2 4.4 67 180-257 3-69 (72)
107 COG2322 Predicted membrane pro 39.6 2.3E+02 0.0049 24.1 8.0 27 241-267 119-145 (177)
108 PF14358 DUF4405: Domain of un 39.5 70 0.0015 22.0 4.4 23 236-258 37-59 (64)
109 PF14387 DUF4418: Domain of un 38.0 94 0.002 24.9 5.4 27 167-193 29-58 (124)
110 cd00284 Cytochrome_b_N Cytochr 37.8 84 0.0018 27.4 5.6 92 137-232 22-130 (200)
111 COG4244 Predicted membrane pro 37.4 1.4E+02 0.003 25.1 6.4 120 171-293 16-138 (160)
112 PF01794 Ferric_reduct: Ferric 37.1 1E+02 0.0022 23.6 5.6 80 169-251 33-121 (125)
113 PF15183 MRAP: Melanocortin-2 36.4 83 0.0018 23.4 4.4 33 280-313 47-79 (90)
114 PTZ00127 cytochrome c oxidase 36.3 4.1E+02 0.0089 25.8 10.7 61 206-267 219-279 (403)
115 PF10966 DUF2768: Protein of u 36.2 1.2E+02 0.0027 20.9 5.0 46 143-192 6-51 (58)
116 PRK05419 putative sulfite oxid 35.9 44 0.00095 29.2 3.5 36 142-177 118-154 (205)
117 PF12794 MscS_TM: Mechanosensi 35.6 3.8E+02 0.0082 25.3 10.1 23 171-193 124-146 (340)
118 PRK15006 thiosulfate reductase 35.2 3.4E+02 0.0074 24.5 14.1 125 134-266 71-203 (261)
119 PF13703 PepSY_TM_2: PepSY-ass 34.7 74 0.0016 23.5 4.1 24 204-227 60-83 (88)
120 PRK10582 cytochrome o ubiquino 34.2 2.3E+02 0.0049 22.2 7.5 69 171-251 16-87 (109)
121 KOG4293 Predicted membrane pro 33.8 11 0.00024 36.5 -0.6 109 135-245 279-394 (403)
122 MTH00033 CYTB cytochrome b; Pr 33.6 1.8E+02 0.0038 28.2 7.5 84 181-271 39-136 (383)
123 KOG4671 Brain cell membrane pr 33.3 87 0.0019 26.9 4.7 61 168-232 78-138 (201)
124 MTH00086 CYTB cytochrome b; Pr 32.7 2.1E+02 0.0045 27.3 7.8 83 182-271 32-128 (355)
125 PRK12585 putative monovalent c 32.3 1.2E+02 0.0026 26.2 5.4 45 142-190 11-57 (197)
126 TIGR00353 nrfE c-type cytochro 32.0 5.7E+02 0.012 26.2 13.4 63 133-195 113-177 (576)
127 PF09323 DUF1980: Domain of un 31.9 2.8E+02 0.0062 23.4 7.9 20 212-231 73-92 (182)
128 PF12650 DUF3784: Domain of un 31.8 1.6E+02 0.0034 22.1 5.7 29 241-269 40-68 (97)
129 PF01578 Cytochrom_C_asm: Cyto 31.0 1.7E+02 0.0037 25.2 6.5 20 136-155 71-90 (214)
130 PF06609 TRI12: Fungal trichot 30.5 2.6E+02 0.0057 28.7 8.5 28 246-273 241-269 (599)
131 PRK10263 DNA translocase FtsK; 30.5 2.9E+02 0.0062 31.2 9.1 11 245-255 115-125 (1355)
132 TIGR01478 STEVOR variant surfa 30.4 55 0.0012 30.1 3.2 26 276-301 261-287 (295)
133 PRK10847 hypothetical protein; 30.0 1.8E+02 0.0038 25.5 6.4 25 243-267 156-180 (219)
134 PF05568 ASFV_J13L: African sw 29.7 62 0.0013 26.6 3.1 25 275-299 31-55 (189)
135 PTZ00370 STEVOR; Provisional 29.6 58 0.0013 30.0 3.3 26 276-301 257-283 (296)
136 KOG1608 Protein transporter of 29.5 3.5E+02 0.0075 25.3 8.1 37 232-268 245-281 (374)
137 KOG2082 K+/Cl- cotransporter K 29.2 2.5E+02 0.0054 29.8 7.9 17 233-249 596-612 (1075)
138 COG4146 Predicted symporter [G 28.9 1.7E+02 0.0036 28.5 6.2 66 220-285 473-545 (571)
139 PRK09546 zntB zinc transporter 28.7 1.6E+02 0.0034 27.4 6.2 45 246-290 269-314 (324)
140 PLN02292 ferric-chelate reduct 28.7 1.3E+02 0.0029 31.5 6.1 64 203-266 204-271 (702)
141 KOG4663 Cytochrome b [Energy p 28.7 2.3E+02 0.0049 24.7 6.4 59 204-267 78-136 (210)
142 PF11158 DUF2938: Protein of u 28.5 64 0.0014 26.8 3.1 49 209-257 95-149 (150)
143 MTH00131 CYTB cytochrome b; Pr 28.4 2.2E+02 0.0047 27.4 7.2 84 181-271 42-139 (380)
144 PF11014 DUF2852: Protein of u 28.3 56 0.0012 25.9 2.6 22 140-161 11-32 (115)
145 PF14007 YtpI: YtpI-like prote 28.3 1.9E+02 0.0041 21.8 5.3 19 246-264 61-79 (89)
146 cd01661 cbb3_Oxidase_I Cytochr 27.9 3.8E+02 0.0082 26.8 9.0 60 133-192 86-150 (493)
147 MTH00145 CYTB cytochrome b; Pr 27.8 2.7E+02 0.0058 26.8 7.7 84 181-271 43-140 (379)
148 COG0598 CorA Mg2+ and Co2+ tra 27.6 1.2E+02 0.0025 28.4 5.1 43 249-291 270-313 (322)
149 COG5395 Predicted membrane pro 27.5 2.4E+02 0.0053 22.2 5.9 46 205-252 37-82 (131)
150 MTH00100 CYTB cytochrome b; Pr 27.2 2.5E+02 0.0055 27.0 7.4 84 181-271 42-139 (379)
151 COG3038 CybB Cytochrome B561 [ 27.2 4E+02 0.0087 22.8 10.6 95 134-229 10-109 (181)
152 MTH00046 CYTB cytochrome b; Va 27.1 2.2E+02 0.0049 27.1 6.9 83 182-271 34-130 (355)
153 MTH00016 CYTB cytochrome b; Va 26.8 2.6E+02 0.0055 27.0 7.3 84 181-271 43-140 (378)
154 PF02322 Cyto_ox_2: Cytochrome 26.6 5.4E+02 0.012 24.1 11.5 55 205-259 156-210 (328)
155 PRK15049 L-asparagine permease 26.5 6.1E+02 0.013 25.1 10.3 19 237-255 415-433 (499)
156 cd01663 Cyt_c_Oxidase_I Cytoch 26.3 6.6E+02 0.014 25.0 11.9 58 133-190 45-109 (488)
157 PF10002 DUF2243: Predicted me 26.2 3.7E+02 0.0081 22.1 7.2 51 175-228 50-100 (143)
158 PF04238 DUF420: Protein of un 26.1 3.5E+02 0.0077 21.9 7.6 86 133-227 27-126 (133)
159 PRK10369 heme lyase subunit Nr 26.1 7.2E+02 0.016 25.4 12.9 62 133-194 167-230 (571)
160 PRK05151 electron transport co 26.0 4.4E+02 0.0095 22.9 9.4 94 208-314 72-172 (193)
161 MTH00156 CYTB cytochrome b; Pr 25.9 2.7E+02 0.0058 26.6 7.3 84 181-271 32-129 (356)
162 TIGR01943 rnfA electron transp 25.5 4.4E+02 0.0096 22.8 10.4 95 208-314 71-171 (190)
163 PF05745 CRPA: Chlamydia 15 kD 25.4 1.4E+02 0.003 24.2 4.3 28 173-200 65-92 (150)
164 COG3125 CyoD Heme/copper-type 25.2 3.4E+02 0.0074 21.3 8.6 77 170-258 17-96 (111)
165 PF05545 FixQ: Cbb3-type cytoc 25.1 1.1E+02 0.0024 19.9 3.3 23 277-299 12-34 (49)
166 PHA03049 IMV membrane protein; 24.8 1.5E+02 0.0032 21.0 3.8 31 283-313 10-44 (68)
167 MTH00034 CYTB cytochrome b; Va 24.5 2.9E+02 0.0063 26.6 7.3 84 181-271 42-139 (379)
168 TIGR00383 corA magnesium Mg(2+ 24.2 2.3E+02 0.005 26.0 6.5 41 250-290 267-308 (318)
169 TIGR00930 2a30 K-Cl cotranspor 24.1 3.8E+02 0.0082 29.3 8.8 27 234-260 489-515 (953)
170 MTH00191 CYTB cytochrome b; Pr 24.1 3.2E+02 0.0069 26.1 7.4 79 211-289 30-127 (365)
171 TIGR02847 CyoD cytochrome o ub 24.0 3.3E+02 0.0071 20.7 7.2 71 171-253 5-78 (96)
172 PRK12586 putative monovalent c 24.0 2.3E+02 0.0049 23.4 5.5 48 141-192 13-62 (145)
173 MTH00022 CYTB cytochrome b; Va 23.7 3.1E+02 0.0067 26.4 7.3 84 181-271 41-138 (379)
174 PF02550 AcetylCoA_hydro: Acet 23.6 24 0.00052 30.5 -0.3 36 2-37 129-167 (198)
175 TIGR00910 2A0307_GadC glutamat 23.4 7.4E+02 0.016 24.6 10.3 22 243-264 400-421 (507)
176 COG5395 Predicted membrane pro 22.9 2.8E+02 0.0061 21.8 5.4 24 243-266 39-62 (131)
177 MTH00100 CYTB cytochrome b; Pr 22.9 3.4E+02 0.0073 26.2 7.4 90 137-232 30-136 (379)
178 PF15048 OSTbeta: Organic solu 22.7 2E+02 0.0043 23.1 4.7 34 268-301 31-64 (125)
179 COG4329 Predicted membrane pro 22.4 1.2E+02 0.0025 24.7 3.4 23 204-226 89-111 (160)
180 PF05915 DUF872: Eukaryotic pr 22.2 3.8E+02 0.0083 21.1 6.3 23 244-266 43-65 (115)
181 MTH00224 CYTB cytochrome b; Pr 22.0 2.6E+02 0.0056 26.9 6.4 84 181-271 43-140 (379)
182 MTH00053 CYTB cytochrome b; Pr 21.8 4.2E+02 0.009 25.6 7.7 84 181-271 43-140 (381)
183 PF05393 Hum_adeno_E3A: Human 21.3 1.4E+02 0.003 22.4 3.3 27 281-310 41-67 (94)
184 MTH00074 CYTB cytochrome b; Pr 21.3 3.3E+02 0.0071 26.3 6.9 84 181-271 43-140 (380)
185 PF06024 DUF912: Nucleopolyhed 21.0 44 0.00095 25.7 0.7 13 296-309 88-100 (101)
186 TIGR00914 2A0601 heavy metal e 20.8 1E+03 0.022 26.2 11.4 40 175-220 906-945 (1051)
187 MTH00119 CYTB cytochrome b; Pr 20.7 6.5E+02 0.014 24.2 8.9 55 205-266 81-135 (380)
188 PRK15097 cytochrome d terminal 20.6 4.5E+02 0.0097 26.5 7.8 58 137-194 16-73 (522)
189 MTH00086 CYTB cytochrome b; Pr 20.5 4.1E+02 0.0088 25.4 7.3 89 138-232 20-125 (355)
190 PF02322 Cyto_ox_2: Cytochrome 20.5 3.8E+02 0.0082 25.1 7.1 58 210-267 83-144 (328)
191 PF01578 Cytochrom_C_asm: Cyto 20.5 5.5E+02 0.012 22.0 10.4 25 168-192 70-94 (214)
192 cd01661 cbb3_Oxidase_I Cytochr 20.4 8.6E+02 0.019 24.2 10.2 27 133-159 43-69 (493)
193 PF11377 DUF3180: Protein of u 20.4 4.7E+02 0.01 21.2 7.6 12 285-296 44-55 (138)
194 COG4760 Predicted membrane pro 20.2 5.9E+02 0.013 22.5 7.4 53 243-298 212-272 (276)
No 1
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.1e-33 Score=243.93 Aligned_cols=157 Identities=46% Similarity=0.846 Sum_probs=145.0
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG 212 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG 212 (315)
.+..+++||++|++||++++|+|++++||++..++.||++|+.+|+++++++++|+++++... ....+++++.|+++|
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~--~~~~~~~~~~H~~lG 109 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV--QGGGGSLNNAHAILG 109 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCcCcchhhh
Confidence 577899999999999999999999999998666789999999999999999999999999875 122247999999999
Q ss_pred HHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC--CcchhhHHHHHHHHHHHHHHH
Q 021260 213 IFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWKIGYGFLLAVVLLAVIVL 290 (315)
Q Consensus 213 ~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~--~~~~~~y~~~~~~~~~~~~~l 290 (315)
+++++++++|+++|++||.+.++.|+.|+++|+++|++++++|++|+.+|+.+.+.+ +.+.+.|++++++++++++++
T Consensus 110 l~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (191)
T cd08760 110 IIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLIL 189 (191)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888999999999999999999999999999999987 778899999999999999998
Q ss_pred H
Q 021260 291 E 291 (315)
Q Consensus 291 e 291 (315)
|
T Consensus 190 ~ 190 (191)
T cd08760 190 E 190 (191)
T ss_pred c
Confidence 7
No 2
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-30 Score=245.77 Aligned_cols=294 Identities=34% Similarity=0.644 Sum_probs=234.2
Q ss_pred EEEEEecCCCCEEEEEeCCCC-CCCCCcEEEEEEcC-CCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeC---c
Q 021260 2 TIILSAIYTTGWVGMGFSKDG-MMAGSSAMVGWFNK-KGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHG---A 76 (315)
Q Consensus 2 ~f~ls~~~~~gWvAiGfs~~~-~M~gsd~~i~~~~~-~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~---g 76 (315)
++...++....|+++++++.+ .|.++.+++.|.++ +|...+..++..++.+ ...+.....++.+.+......+ .
T Consensus 61 ~i~~~~~~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (403)
T KOG4293|consen 61 SIAFSAPLSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSP-SLVPALLSFTLGNVRAECNLRSSSPI 139 (403)
T ss_pred EEEEecCCcccccccccCCccccccccceeeeeeccccchhhceeeeecccch-hhcccccceeeecCcchhhccCCCCc
Confidence 456677755569999999976 79999999999887 5778888888887775 4444333333333222112334 6
Q ss_pred EEEEEEEEecCCCCCcccEEEeecCCCCCCCCccccCCCC-----ceeEeecC--CCccccc------ccchhhhhhHHH
Q 021260 77 MIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKR-----TIMFDFSG--GSSSVLY------VSSREKKNHGAL 143 (315)
Q Consensus 77 ~i~~~f~r~~~~~~~~~~~I~A~G~~~~s~~~l~~H~~~g-----s~~ldl~~--G~~~~~~------~~~~~~~~Hg~l 143 (315)
.++++++.+.. +...+..+|+.|+.......+.+|+.++ ...+|++. |..+..+ ....+...||++
T Consensus 140 ~if~~~~l~~~-~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil 218 (403)
T KOG4293|consen 140 GIFASFKLAGA-NGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGIL 218 (403)
T ss_pred eEEEEEEeecC-CCceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHH
Confidence 88999988841 2678999999998753356778887643 23455554 3332211 244555669999
Q ss_pred HHHHHHHHHhhhhhhhhhccCC---CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHH
Q 021260 144 GMIGWGIILPVGAIIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSI 220 (315)
Q Consensus 144 m~~aw~~l~p~gil~aR~~k~~---~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~ 220 (315)
+.++|+++.|+|++.+||+|.. .+.||++|+.+|..++++.+.|+..+....++... ...+.|..+|+..+++.+
T Consensus 219 ~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~--~~~~~h~~~G~~~~~l~~ 296 (403)
T KOG4293|consen 219 NALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDG--TVYSAHTDLGIILLVLAF 296 (403)
T ss_pred hhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCc--eeeeecccchhHHHHHHH
Confidence 9999999999999999999988 78999999999999988888898888877765332 567999999999999999
Q ss_pred HHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcch-hhHHHHHHHHHHHHHHHHHHHHhhhC
Q 021260 221 LQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWK-IGYGFLLAVVLLAVIVLETLSWMKKR 299 (315)
Q Consensus 221 ~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~-~~y~~~~~~~~~~~~~le~~~~~~~~ 299 (315)
+|++..++||.++++.|++||++|+..||..+++|++|++.|+.+.+....|. ++|+...+...++.+++|..+|+..-
T Consensus 297 lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~ 376 (403)
T KOG4293|consen 297 LQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLIAVILEILSWRITI 376 (403)
T ss_pred HHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechhhhhhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999988887 89998888889999999998886643
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.94 E-value=6e-27 Score=190.85 Aligned_cols=124 Identities=31% Similarity=0.539 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhh-cc-CCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHH
Q 021260 139 NHGALGMIGWGIILPVGAIIPRY-FK-HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFIL 216 (315)
Q Consensus 139 ~Hg~lm~~aw~~l~p~gil~aR~-~k-~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~ 216 (315)
+||++|.++|++++|+|++++|+ .+ ..++.|+++|+.+|+++++++++|+++++...++.+ +++++++|+++|++++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~-~~~~~s~H~~lGl~~~ 79 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESG-IANFYSLHSWLGLAAF 79 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCCccchhHHHHHHHH
Confidence 69999999999999999999997 33 346799999999999999999999999998766543 2489999999999999
Q ss_pred HHHHHHHHhheeccCCC---CCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260 217 VLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLALFFASVNIVLGI 263 (315)
Q Consensus 217 ~l~~~Q~~~g~~r~~~~---~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl 263 (315)
++.++|++.|++++.++ .+.|+.++++|+++|++++++|++|+.+|+
T Consensus 80 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 80 VLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999887765 677899999999999999999999999985
No 4
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.91 E-value=2e-24 Score=177.46 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=119.8
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG 212 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG 212 (315)
+..++++|+.||.+++.++++.||++.|..|..++.+..+|+.+|.+++++.++|+..++...++.+. +|++|+|+|+|
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~-~~~~SlHSwlG 82 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGI-PNLYSLHSWLG 82 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-cccccHHHHHH
Confidence 56789999999999999999999999999887777889999999999999999999999887766443 58999999999
Q ss_pred HHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 213 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 213 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
++++++..+|.+.|+ +.|....+.|+...++|+++|+++++++++++.+|+.+.
T Consensus 83 l~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek 139 (144)
T cd08766 83 IGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 478765566888889999999999999999999999864
No 5
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.91 E-value=4e-24 Score=175.88 Aligned_cols=127 Identities=30% Similarity=0.508 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhcc--C-CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHH
Q 021260 139 NHGALGMIGWGIILPVGAIIPRYFK--H-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI 215 (315)
Q Consensus 139 ~Hg~lm~~aw~~l~p~gil~aR~~k--~-~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~ 215 (315)
+|+++|.+||++++|.|++++|+.+ . .++.|+++|+.+|.+++++.++|+++++...+..+ .+|++++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~-~~h~~s~H~~lG~~~ 79 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNG-KPHFKSWHSILGLAT 79 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCCchhhhhHHH
Confidence 6999999999999999999999732 2 35789999999999999999999999987665433 358999999999999
Q ss_pred HHHHHHHHHhheec---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 216 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 216 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
++++++|++.|+++ |..+.+.|+.++++|+++|++++++|++|+.+|+...
T Consensus 80 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~ 133 (137)
T PF03188_consen 80 FVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEK 133 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 4455667888999999999999999999999999543
No 6
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.90 E-value=9.7e-24 Score=172.38 Aligned_cols=126 Identities=27% Similarity=0.386 Sum_probs=111.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHH
Q 021260 137 KKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI 215 (315)
Q Consensus 137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~ 215 (315)
+++|+++|.++|++++|.|++++|++|.. ++.|+++|+.+|++++++.++|+++++...++.+ .+|+++.|+++|+++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~-~~h~~s~Hs~lGl~~ 80 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGG-IANLYSLHSWLGLAT 80 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-cccchhHHHHHHHHH
Confidence 57999999999999999999999998764 4588999999999999999999999998765432 358999999999999
Q ss_pred HHHHHHHHHhheec---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260 216 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 263 (315)
Q Consensus 216 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl 263 (315)
+++.++|++.|+.+ |.+..+.|+.++++|+++|+++++++++|+++|+
T Consensus 81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999765 4444446889999999999999999999999985
No 7
>PLN02351 cytochromes b561 family protein
Probab=99.90 E-value=3.9e-23 Score=180.97 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=113.1
Q ss_pred hhh-hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhH
Q 021260 135 REK-KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI 213 (315)
Q Consensus 135 ~~~-~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~ 213 (315)
..+ ++|++||.++|++|.+.||+++|.+|..++.|+.+|+.+|.+|+++.++|+...+ .+..+..+|+++.|+|+|+
T Consensus 48 ~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a~f--h~~~~~i~nlySLHSWlGl 125 (242)
T PLN02351 48 LVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWTKF--HGQDGIVANFYSLHSWMGL 125 (242)
T ss_pred ceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCccchhHHHHHHHH
Confidence 355 7999999999999999999999999877677999999999999999999999833 2322212589999999999
Q ss_pred HHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 214 FILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 214 ~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
++++++.+|.+.|+ +.|......|....++|.++|+++++++++++.+|+.+.
T Consensus 126 ~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EK 181 (242)
T PLN02351 126 ICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEK 181 (242)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 457766667888899999999999999999999998863
No 8
>PLN02810 carbon-monoxide oxygenase
Probab=99.88 E-value=3.9e-22 Score=173.33 Aligned_cols=133 Identities=21% Similarity=0.209 Sum_probs=121.1
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG 212 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG 212 (315)
++..+++|++||.++++++...||++.|.++..++.+..+|+.+|.+++++.++|+...|...++.+. +|++|+|+|+|
T Consensus 43 ~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i-~nlySLHSWlG 121 (231)
T PLN02810 43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGI-ANLYSLHSWLG 121 (231)
T ss_pred CCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CceeeHHHHHH
Confidence 45689999999999999999999999999887677889999999999999999999999988776543 68999999999
Q ss_pred HHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 213 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 213 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
++++++..+|.+.|+ +.|+...+.|....++|.++|..+++++++++.+|+.+.
T Consensus 122 l~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EK 178 (231)
T PLN02810 122 IGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEK 178 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 578877777888889999999999999999999998863
No 9
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.88 E-value=1.8e-22 Score=175.77 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=116.2
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheecccc-ccCCCCcccchh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL-NVKNANISAHRG 210 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~H~~ 210 (315)
+...+++|+.+|.+++.+++..|+++.|.++.. ++.+..+|+.+|.+|+++.++|+..++...++. ++.+|++|.|+|
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence 345799999999999999999999999998853 446778999999999999999999988776654 234689999999
Q ss_pred hhHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260 211 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 211 iG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
+|++++++..+|.+.|+ +.|......|+...++|+++|+++++++++++.+|+.+
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 46776556677788899999999999999999999976
No 10
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.88 E-value=2e-22 Score=173.82 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=112.6
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhcc----CCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccc
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFK----HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAH 208 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k----~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H 208 (315)
...++++|+++|.++|++++|+|++..|... ..++.|+++|+.+|.+++++.++|+.+++...++.+ .+|+++.|
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~-~~hf~s~H 95 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNG-KPHFTSWH 95 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCccchh
Confidence 3568999999999999999999999765322 135688999999999999999999999887655433 35899999
Q ss_pred hhhhHHHHHHHHHHHHhhee---ccCCC--CCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260 209 RGIGIFILVLSILQILAFFL---RPSKD--SKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 209 ~~iG~~~~~l~~~Q~~~g~~---r~~~~--~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
+++|+++++++++|++.|+. +|... .++|+.++++|+++|++++++|++|+.+|++.
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999974 33332 35788899999999999999999999999988
No 11
>PLN02680 carbon-monoxide oxygenase
Probab=99.88 E-value=7.2e-22 Score=172.96 Aligned_cols=133 Identities=21% Similarity=0.205 Sum_probs=119.0
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG 212 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG 212 (315)
+..++++|++||.+++.++...+|+..|..+..++.+..+|+.+|.+++++.++|+...++..++.+. +|++|+|+|+|
T Consensus 43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~-~nfySlHSWlG 121 (232)
T PLN02680 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGI-DNFYSLHSWLG 121 (232)
T ss_pred CcceEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cccccHHHHHH
Confidence 45689999999999999999999999998887777889999999999999999999998888775443 68999999999
Q ss_pred HHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 213 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 213 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+++++++.+|.+.|+ +.|+...+.|+...++|+++|+++++++++++.+|+.+.
T Consensus 122 l~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek 178 (232)
T PLN02680 122 LACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEK 178 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 568766666777889999999999999999999998763
No 12
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.88 E-value=2.3e-22 Score=169.34 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=116.7
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhh
Q 021260 135 REKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 211 (315)
Q Consensus 135 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~i 211 (315)
+.+++|+++|.+++++|..+||++.|..++ .+..|+.+|+.+|.+++++.++|+..++...++.+. +|++|.|+|+
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~-~nlySlHSWl 111 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHT-ANLYSLHSWV 111 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cchhhHHHHH
Confidence 489999999999999999999999997653 345689999999999999999999999988776543 6899999999
Q ss_pred hHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 212 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 212 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
|+++++++.+|.+.|+ +.|....+.|...+++|+++|+++++++++++.+|+.+.
T Consensus 112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek 169 (179)
T cd08762 112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEK 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 456666667888899999999999999999999999864
No 13
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.88 E-value=2.2e-22 Score=166.27 Aligned_cols=132 Identities=22% Similarity=0.250 Sum_probs=116.6
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchh
Q 021260 134 SREKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG 210 (315)
Q Consensus 134 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~ 210 (315)
...+++|+.||.+++.++...+|++.|..+. .++.+..+|+.+|.+++++.++|+...+...++.+. +|++|+|+|
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~-~~fySlHSw 87 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI-PNMYSLHSW 87 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CccccHHHH
Confidence 4589999999999999999999999986542 356788999999999999999999999887765443 689999999
Q ss_pred hhHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 211 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 211 iG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+|++++++..+|.+.|+ +.|......|+...++|+++|+++++|+++++.+|+.+.
T Consensus 88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek 146 (153)
T cd08765 88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEK 146 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999995 467766667888999999999999999999999999864
No 14
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.87 E-value=9.9e-22 Score=161.37 Aligned_cols=131 Identities=20% Similarity=0.271 Sum_probs=116.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhH
Q 021260 135 REKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI 213 (315)
Q Consensus 135 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~ 213 (315)
.++++|+.+|.+++.+++..++++.|..+.. ++.+.++|+.+|.+++++.++|+...+...++.+ .+|++|.|+|+|+
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~-~~hf~SlHswlGl 83 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANG-YPDMYSLHSWCGI 83 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCccccHHHHHHH
Confidence 4899999999999999999999999987743 4567899999999999999999999987766543 3689999999999
Q ss_pred HHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 214 FILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 214 ~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+++++..+|.+.|+ +.|....+.|..++++|+++|+++++++++++.+|+.+.
T Consensus 84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek 139 (143)
T cd08763 84 LTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 467766667899999999999999999999999999763
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.83 E-value=1.1e-20 Score=163.89 Aligned_cols=133 Identities=19% Similarity=0.275 Sum_probs=119.5
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 211 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~i 211 (315)
.++.+++|+++|+++|+++...++++.|.+|.. ++.-+-+|..+|+++++++++|+...|...+..+. .+++|.|+|+
T Consensus 51 ~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i-~NfySLHSWl 129 (245)
T KOG1619|consen 51 PNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI-ANFYSLHSWL 129 (245)
T ss_pred cchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-cceeeHHHHH
Confidence 467999999999999999999999999997763 45567899999999999999999999988776553 4799999999
Q ss_pred hHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 212 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 212 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
|+.++++..+|.+.|| +.|....+.|....++|+.+|..+++++++|+.+|+.+.
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek 187 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEK 187 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 467777788999999999999999999999999999654
No 16
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.76 E-value=1.2e-17 Score=139.06 Aligned_cols=120 Identities=25% Similarity=0.360 Sum_probs=93.7
Q ss_pred CEEEEEecC-CCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEE
Q 021260 1 MTIILSAIY-TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIY 79 (315)
Q Consensus 1 i~f~ls~~~-~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~ 79 (315)
|+|+++++. +.||+|||||++++|.|+|+++||.+++|.+.+.++|++|+..|..+..++ +... . .....+|.++
T Consensus 16 v~~~l~~~~~~~gwvaiGfs~~~~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~-~~~~-~--~~~~~~g~~~ 91 (148)
T smart00664 16 IAFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQD-VTDL-L--SATYENGVLT 91 (148)
T ss_pred EEEEEEEecCCCCEEEEEECCCCCcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccc-cccc-e--eEEEECCEEE
Confidence 589999973 289999999999999999999999987799999999999998876444333 3221 0 2368899999
Q ss_pred EEEEEecCC--------CCCcccEEEeecCCCCCCCCccccCC--CCceeEeecCC
Q 021260 80 MAFQLKFEN--------HLRQQPIILAFGSRYPKHFHLTHHVD--KRTIMFDFSGG 125 (315)
Q Consensus 80 ~~f~r~~~~--------~~~~~~~I~A~G~~~~s~~~l~~H~~--~gs~~ldl~~G 125 (315)
|+|+|+.+. .+++++++||.|+.. .++.+.+|+. .+..++++..+
T Consensus 92 ~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~-~~~~~~~H~~~~~~~~~i~~~~~ 146 (148)
T smart00664 92 CRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLS-PNGGLGYHDFSLKSTKKVCLSSC 146 (148)
T ss_pred EEEEEEccCCCccccccCCCeEEEEEEECCCC-CCCCeeeccccccCceEEEeccC
Confidence 999998752 245889999999832 2567899986 46667887764
No 17
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.67 E-value=5.5e-16 Score=124.89 Aligned_cols=95 Identities=25% Similarity=0.489 Sum_probs=77.8
Q ss_pred CEEEEEecCC-CCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEE-eeccccccccCC-CCCccccCCCceEEEeCcE
Q 021260 1 MTIILSAIYT-TGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYY-LQGTRSSQVIHD-KGELPLTNVPPVVAIHGAM 77 (315)
Q Consensus 1 i~f~ls~~~~-~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~-~~g~~~~~~~~~-~~~l~~~~~s~~~~~~~g~ 77 (315)
|+|+|+++.. .||+|||||++++|.++|+++|+.+ +|.+.+.++| ..++.+|..+.+ +.++.+.. ...+++.
T Consensus 18 i~~~l~~~~~~~~w~aiGfs~~~~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~~~~~~----~~~~~g~ 92 (124)
T PF03351_consen 18 IEFELTGPANTNGWVAIGFSDDGGMGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQDIQLLS----GSYSNGT 92 (124)
T ss_pred EEEEEEeccCCCCEEEEEEccccCCCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCcEEEEE----EEEECCE
Confidence 5799998743 8999999999889999999999998 6999999999 888888877643 23355433 2578999
Q ss_pred EEEEEEEecCC---------CCCcccEEEeec
Q 021260 78 IYMAFQLKFEN---------HLRQQPIILAFG 100 (315)
Q Consensus 78 i~~~f~r~~~~---------~~~~~~~I~A~G 100 (315)
++|+|+|+... .+.++++|||+|
T Consensus 93 ~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 93 TTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred EEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 99999998652 367889999987
No 18
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.35 E-value=1.4e-11 Score=105.40 Aligned_cols=121 Identities=19% Similarity=0.311 Sum_probs=86.5
Q ss_pred CEEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEE
Q 021260 1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYM 80 (315)
Q Consensus 1 i~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~ 80 (315)
+.|+|++|.+.||+|+|++ ++|.++.++|.|++++ +++++.|+.+||.+|++...+-.+++.+++ ..++++++.
T Consensus 42 ~i~qi~aP~~~gW~gls~G--g~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs---~vn~t~~t~ 115 (184)
T cd00241 42 FIGELVAPRASGWIGLALG--GAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPSS---SVNSTHWKL 115 (184)
T ss_pred EEEEEeCcCCCCeEEEeec--ccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCCC---cEeCCEEEE
Confidence 4689999988999999996 6999999999999764 599999999999998664332235544433 356676555
Q ss_pred EEE----EecC-----CCCCcccEEEeecC---CCCC--CCCccccCCCCceeEeecCCCc
Q 021260 81 AFQ----LKFE-----NHLRQQPIILAFGS---RYPK--HFHLTHHVDKRTIMFDFSGGSS 127 (315)
Q Consensus 81 ~f~----r~~~-----~~~~~~~~I~A~G~---~~~s--~~~l~~H~~~gs~~ldl~~G~~ 127 (315)
.|+ ...+ +......++||.++ .+|+ +..|.+||..|.+.+||..+..
T Consensus 116 ~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G~f~~dl~~A~~ 176 (184)
T cd00241 116 VFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGINLSDAQS 176 (184)
T ss_pred EEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCcceeEechhccc
Confidence 442 2222 11223378999852 3332 6779999988999999986544
No 19
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.34 E-value=4.5e-12 Score=98.96 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=77.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhh
Q 021260 132 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 211 (315)
Q Consensus 132 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~i 211 (315)
..+..+.+|+++|.++|++++|+|++..+ .|+ ++|..+|++.++++++|+.++....++.+. -..++.|.++
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~-~~s------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~-lyp~n~H~k~ 84 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGN-ARS------RWHLPVQTVFLVLMILGLFLGSVYNGSTPD-LYPNNAHGKM 84 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHH
Confidence 36789999999999999999999998764 443 349999999999999999999887666542 1368999999
Q ss_pred hHHHHHHHHHHHHhheec
Q 021260 212 GIFILVLSILQILAFFLR 229 (315)
Q Consensus 212 G~~~~~l~~~Q~~~g~~r 229 (315)
|.++++++++|++.|+++
T Consensus 85 g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 85 GWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999764
No 20
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=98.44 E-value=2.6e-06 Score=65.84 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=65.9
Q ss_pred CCCCcEEEEEEcCC-CCcEEEEEEeeccccccccCCCCCccc--cCCCceEEEeCc--EEEEEEEEecCCCCCcccEEEe
Q 021260 24 MAGSSAMVGWFNKK-GQPRIKQYYLQGTRSSQVIHDKGELPL--TNVPPVVAIHGA--MIYMAFQLKFENHLRQQPIILA 98 (315)
Q Consensus 24 M~gsd~~i~~~~~~-G~~~v~~~~~~g~~~~~~~~~~~~l~~--~~~s~~~~~~~g--~i~~~f~r~~~~~~~~~~~I~A 98 (315)
|.|++++|++++++ |.+.+..|.++++.+ . ++++++.+ .+.+ +++.++ +|+.+.+++.+ .++.+.+|.
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~-~--l~~~~lsf~v~~ls--ae~~~~~~~IfAtl~Lp~n--~t~vnhVWQ 73 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSP-S--LQPGPLSFDVSDLS--AEYSGGEMTIFATLKLPGN--STSVNHVWQ 73 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeeccccc-c--cccccccccccceE--eEEeCCEEEEEEEEEcCCC--CcEEEEEeC
Confidence 99999999999988 889999999998886 2 23343443 3333 355667 45666677755 788999999
Q ss_pred ecCCCCCCCCccccCCC-----CceeEee
Q 021260 99 FGSRYPKHFHLTHHVDK-----RTIMFDF 122 (315)
Q Consensus 99 ~G~~~~s~~~l~~H~~~-----gs~~ldl 122 (315)
.|+... ++.+..|+.. +..+|||
T Consensus 74 ~G~~v~-gg~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 74 VGPSVQ-GGSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred cCCccC-CCccccCCCCCccccceEEecC
Confidence 999842 5778889753 4556664
No 21
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=98.26 E-value=2.5e-06 Score=81.14 Aligned_cols=93 Identities=20% Similarity=0.336 Sum_probs=68.9
Q ss_pred CEEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEE
Q 021260 1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYM 80 (315)
Q Consensus 1 i~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~ 80 (315)
|.|+|... +.+|+.||||+.+.|.+||+++.|.+ .+...++|+|.+-...-..++||+ .++... ..+...+.+
T Consensus 58 i~F~l~~~-t~~~v~fGfSdrG~lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQD-yqll~~----~e~~~~~~i 130 (603)
T KOG3568|consen 58 IAFRLQVR-TAGYVGFGFSDRGALANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQD-YQLLYA----MENSTHTII 130 (603)
T ss_pred eEEEEEec-cCCEEEEecCCcCCcccCcEEEEecc-CCchhhhhhhcCCCCceecchhhh-hHHHhh----hccCCccEE
Confidence 67999997 78999999999899999999999865 455788999987555444455555 555432 123335568
Q ss_pred EEEEecCC--------CCCcccEEEeec
Q 021260 81 AFQLKFEN--------HLRQQPIILAFG 100 (315)
Q Consensus 81 ~f~r~~~~--------~~~~~~~I~A~G 100 (315)
.|+|+++. .+++.+++||+-
T Consensus 131 ~frRkl~TCDp~Dy~i~dgTv~vv~a~~ 158 (603)
T KOG3568|consen 131 EFRRKLHTCDPNDYSITDGTVRVVWAYL 158 (603)
T ss_pred EEecccCcCCccceeccCCeEEEEEEEe
Confidence 89998752 468899999963
No 22
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.17 E-value=0.0043 Score=52.92 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=42.9
Q ss_pred CCcccchhhhHHHHHHHHHHHHhh-eeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 203 ANISAHRGIGIFILVLSILQILAF-FLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 203 ~~~~~H~~iG~~~~~l~~~Q~~~g-~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
-+.++|.+.|+.+..++.++.... .+.+++ ++.++..|..++.+++++-..+..+|....
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLNSLALLLFAWQAITGWRIL 172 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888876554 222222 345556888888888888888888887654
No 23
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.69 E-value=0.007 Score=49.00 Aligned_cols=94 Identities=21% Similarity=0.384 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHH
Q 021260 170 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR 249 (315)
Q Consensus 170 f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~ 249 (315)
|..|..+|++++++...--++.....+... +......|..+..+.+++.++=...++.... .+.++-+...|.++|.
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~-~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl 78 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLT-KRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGL 78 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHH
Confidence 467999999997754443333332222111 1134578999999888888877766654332 2234455678999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 021260 250 LALFFASVNIVLGIQIG 266 (315)
Q Consensus 250 ~~~~l~~~~i~~Gl~~~ 266 (315)
+++++..+|...|+...
T Consensus 79 ~~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 79 ATVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997765
No 24
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.48 E-value=0.043 Score=44.53 Aligned_cols=93 Identities=19% Similarity=0.365 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHH-HHHhhhheec-cccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHH
Q 021260 172 LHAIIQLVGFIFGL-ATVLLGIQLY-NKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR 249 (315)
Q Consensus 172 ~H~~~~~~~~~~~~-~g~~l~~~~~-~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~ 249 (315)
+|..+|.+++.+.. .|+.. .... .....+......|..+-.+.+++.++=.+..+.. ++.+.++-++..|.++|.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~-~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~--~~~~~~~h~~s~H~~lG~ 77 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILA-ARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFIN--KNRNGKPHFKSWHSILGL 77 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCCCCCCCchhhhhH
Confidence 49999999977655 34333 2221 1111123456789999888887777666665432 222233555678999999
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 021260 250 LALFFASVNIVLGIQIGY 267 (315)
Q Consensus 250 ~~~~l~~~~i~~Gl~~~~ 267 (315)
+++++...|...|+....
T Consensus 78 ~~~~l~~~Q~~~G~~~~~ 95 (137)
T PF03188_consen 78 ATFVLALLQPLLGFFRFF 95 (137)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999988654
No 25
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.47 E-value=0.034 Score=44.89 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHH-HHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHH
Q 021260 172 LHAIIQLVGFIFGL-ATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRL 250 (315)
Q Consensus 172 ~H~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~ 250 (315)
+|..+|++++++.. .|+.+.-......+ +......|..+.++.+++.++=...++...++ +.++-++..|.++|.+
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~-~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~--~~~~~~~s~H~~lGl~ 77 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLS-KPTWFLLHVVLQILALVLGVIGLLAIFISHNE--SGIANFYSLHSWLGLA 77 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCccchhHHHHHH
Confidence 48999999875544 44444321011111 12345789999998888877776666544222 1234567789999999
Q ss_pred HHHHHHHHHHHhhhhccCC
Q 021260 251 ALFFASVNIVLGIQIGYAG 269 (315)
Q Consensus 251 ~~~l~~~~i~~Gl~~~~~~ 269 (315)
++++..+|...|+.....+
T Consensus 78 ~~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 78 AFVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999998876554
No 26
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.41 E-value=0.034 Score=48.06 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=71.0
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhcc-CCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccc-cCCCCcccchh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFK-HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRG 210 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k-~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~H~~ 210 (315)
.+..+++|..++.++..+.. +|..+.-..+ ...+.....|..+-++.++++++=..+|+......+ .+..+...|.+
T Consensus 65 ~~~~~~~H~~~q~~~~~~~i-~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~ 143 (191)
T cd08760 65 DPVWFYLHAGLQLLAVLLAI-AGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRW 143 (191)
T ss_pred CchhHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHH
Confidence 45678999999998876655 5555443332 223445689999999988888887788875443322 12345789999
Q ss_pred hhHHHHHHHHHHHHhheeccC
Q 021260 211 IGIFILVLSILQILAFFLRPS 231 (315)
Q Consensus 211 iG~~~~~l~~~Q~~~g~~r~~ 231 (315)
+|.++.++...|...|+.-..
T Consensus 144 ~G~~~~~l~~v~i~~G~~~~~ 164 (191)
T cd08760 144 LGRAALILAIVNIFLGLDLAG 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999975443
No 27
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.30 E-value=0.054 Score=46.54 Aligned_cols=97 Identities=14% Similarity=0.335 Sum_probs=66.6
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHhhhheecccc--ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchh
Q 021260 167 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL--NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH 244 (315)
Q Consensus 167 ~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~--~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H 244 (315)
...|.+|..+|.+++.+.....++.+...+.. ..+......|.++-.+.+++.++=....+.- ++.+.++-++-.|
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~--~~~~~~~hf~s~H 95 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN--KERNGKPHFTSWH 95 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCccchh
Confidence 45689999999999877665555544322211 1112355789999998888776655444322 2223345566789
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 021260 245 HWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 245 ~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
.|+|.+++++...|...|+..
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 96 GILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999864
No 28
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.24 E-value=0.08 Score=43.68 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260 169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 248 (315)
Q Consensus 169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 248 (315)
=|.+|..+|++++++...--++.+......+. ......|.++.++.+++.++-...-+..+++ +..+=+...|-|+|
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k-~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlG 82 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETK-RSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCG 82 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHH
Confidence 47889999999988766544554432221111 1345689999999988877655444322222 22344566999999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 021260 249 RLALFFASVNIVLGIQIG 266 (315)
Q Consensus 249 ~~~~~l~~~~i~~Gl~~~ 266 (315)
.+++++=..|...|+...
T Consensus 83 l~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 83 ILTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997654
No 29
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.96 E-value=0.082 Score=46.55 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=64.0
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 167 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 167 ~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
...|.+|..+|++++++...=-++.+......+ +......|..+..+.+++.++-...-+-.+++..+..+=+...|-|
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence 357899999999998765443333333222111 1123458999999999887766444332233322223334558999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 021260 247 FGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~ 265 (315)
+|.++++|=..|...|+..
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743
No 30
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=95.63 E-value=0.036 Score=47.11 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhe--ec-cccccCCCCcccchhhhHHHHHHHHHHHHhheec------------------
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQ--LY-NKLNVKNANISAHRGIGIFILVLSILQILAFFLR------------------ 229 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~--~~-~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r------------------ 229 (315)
.+|+..-++-+++.+.|+.+... .. ............|..+|++.+++.++..+.++.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 56887777667777778777532 11 1111112456899999999999999999988776
Q ss_pred cC--CCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260 230 PS--KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 230 ~~--~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
.. ++.+..+.+|...++.-.+++++..+.+.+|+-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2233456678888899999999999999999998
No 31
>PLN02680 carbon-monoxide oxygenase
Probab=95.22 E-value=0.35 Score=43.03 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=60.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260 169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 248 (315)
Q Consensus 169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 248 (315)
=|.+|-.+|++++++...--++.+......+ ......|..+=.+.+++.++-...-+..++. +.++=+...|-|+|
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k--~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWlG 121 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTK--NLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWLG 121 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHHH
Confidence 4789999999999885544444333222111 1345678887777777665544332222221 12333445899999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 021260 249 RLALFFASVNIVLGIQI 265 (315)
Q Consensus 249 ~~~~~l~~~~i~~Gl~~ 265 (315)
.+++++-.+|...|+..
T Consensus 122 l~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 122 LACLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
No 32
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.05 E-value=0.36 Score=39.90 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=60.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHH
Q 021260 168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 247 (315)
..|.+|-.+|++++++...=-++.+......+ ......|..+=.+.+++.++-...-+ +.+. .+..+-....|-|+
T Consensus 6 ~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k--~~~k~iH~~l~~la~~~~vvGl~avf-~~~~-~~~~~~~~SlHSwl 81 (144)
T cd08766 6 LIFNVHPVLMVIGFIFLAGEAILAYKTVPGSR--EVQKAVHLTLHLVALVLGIVGIYAAF-KFHN-EVGIPNLYSLHSWL 81 (144)
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHhhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHH-HHhc-ccCccccccHHHHH
Confidence 46899999999998665543444444322111 12346788887777776655443332 2111 11233344589999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 021260 248 GRLALFFASVNIVLGIQ 264 (315)
Q Consensus 248 G~~~~~l~~~~i~~Gl~ 264 (315)
|.+++++-..|...|+.
T Consensus 82 Gl~t~~L~~lQ~~~G~~ 98 (144)
T cd08766 82 GIGTISLFGLQWLFGFV 98 (144)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999976
No 33
>COG2717 Predicted membrane protein [Function unknown]
Probab=94.04 E-value=0.77 Score=40.18 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccc--cc--cCCCCcccchhhhHHHHHHH
Q 021260 144 GMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNK--LN--VKNANISAHRGIGIFILVLS 219 (315)
Q Consensus 144 m~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~--~~--~~~~~~~~H~~iG~~~~~l~ 219 (315)
..+.|.+++-+....+|+.+. +.+.++=+.+.+.|+..++.=+..-+...-+ .. ..|-...+=-.+|++.++++
T Consensus 50 ~al~fLl~~la~tp~~~~~~~--~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iaflll 127 (209)
T COG2717 50 WALIFLLVTLAVTPLARLLKQ--PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAFLLL 127 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 334444555455556676664 4566777777777776655433332211111 10 01233445556777777666
Q ss_pred HHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHH
Q 021260 220 ILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 289 (315)
Q Consensus 220 ~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~y~~~~~~~~~~~~~ 289 (315)
+.-.+.-+---.++.. +.|+.+|++ ++.+++||.+=...+.. .+..+.+.|+++.+++++..+.
T Consensus 128 ~pLalTS~k~~~rrlG--~rW~~LHrL-vYl~~~L~~lH~~~s~K---~~~~~~vlY~ii~~~lll~R~~ 191 (209)
T COG2717 128 IPLALTSFKWVRRRLG--KRWKKLHRL-VYLALILGALHYLWSVK---IDMPEPVLYAIIFAVLLLLRVT 191 (209)
T ss_pred HHHHHHhhHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHH
Confidence 5544432210011111 668999995 78888888887777222 1223456777666555554444
No 34
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.75 E-value=3 Score=35.65 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=61.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheeccccc-cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
..|.+|-.+|++++++...=.++.+.....+. .+......|..+=.+.+++.++-...-+-.++. .+ .+=.-.+|.|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~-~~-~~nlySlHSW 110 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV-HH-TANLYSLHSW 110 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-ccchhhHHHH
Confidence 37999999999998876443344343222211 111235778888888877776655444332222 11 1222236999
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 021260 247 FGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+|..++++=..|...|+...
T Consensus 111 lGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 111 VGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998654
No 35
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=92.16 E-value=0.4 Score=40.01 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=68.0
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCC--CChhhhhhHHHHHHHHHHHHHHHhhhheec---c-ccccCCCCcc
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGIQLY---N-KLNVKNANIS 206 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~--~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~---~-~~~~~~~~~~ 206 (315)
++....+|.++..+|..+.. +|+.+.=.+|+. .+.-.-+|..+.++++++...=.+.|+... . ....+....-
T Consensus 44 k~~~k~iH~~L~~~a~~~~i-~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p 122 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAI-ISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMP 122 (153)
T ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 55678999999999976654 777655445543 234457899999999888777777776432 1 1111123567
Q ss_pred cchhhhHHHHHHHHHHHHhhee
Q 021260 207 AHRGIGIFILVLSILQILAFFL 228 (315)
Q Consensus 207 ~H~~iG~~~~~l~~~Q~~~g~~ 228 (315)
.|...|.+++++.+.-.++|+.
T Consensus 123 ~H~~~G~~i~~Lai~t~~lG~~ 144 (153)
T cd08765 123 LHVYSGLFIFGTVIATALMGIT 144 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999864
No 36
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=91.68 E-value=0.23 Score=30.33 Aligned_cols=31 Identities=29% Similarity=0.770 Sum_probs=26.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
|+.+..+|+++|..+.+.-.+-+.+|+.+..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677789999999999999999999987654
No 37
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=91.39 E-value=0.82 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=26.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 268 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~ 268 (315)
|++....|+++||+-+++..+.+..|+.+...
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~ 33 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFY 33 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566799999999999999999999887654
No 38
>PLN02351 cytochromes b561 family protein
Probab=91.06 E-value=3.2 Score=37.18 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=56.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260 169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 248 (315)
Q Consensus 169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 248 (315)
.|.+|-.+|++++++...=-++.+......+. .....|..+=.+.+++.++-...- .+ ..++..+=.-..|-|+|
T Consensus 50 ffn~HP~lMviGfi~L~geAILvYR~~~~~~k--~~K~lH~~Lh~~Ali~~vvGl~a~--fh-~~~~~i~nlySLHSWlG 124 (242)
T PLN02351 50 YAVLHPLLMVIGFILISGEAILVHRWLPGSRK--TKKSVHLWLQGLALASGVFGIWTK--FH-GQDGIVANFYSLHSWMG 124 (242)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhhcccccch--HHHHHHHHHHHHHHHHHHHHHHHH--Hh-cccCCccchhHHHHHHH
Confidence 34799999999988755444444433322211 245677777666665554433331 11 11111122334799999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 021260 249 RLALFFASVNIVLGIQIG 266 (315)
Q Consensus 249 ~~~~~l~~~~i~~Gl~~~ 266 (315)
..++++=.+|-..|+...
T Consensus 125 l~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 125 LICVSLFGAQWLTGFMSF 142 (242)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998654
No 39
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=90.82 E-value=2.6 Score=32.82 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=54.2
Q ss_pred CChhhhhhHHHHHHHHHH-HHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchh
Q 021260 166 DPLWYYLHAIIQLVGFIF-GLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH 244 (315)
Q Consensus 166 ~~~wf~~H~~~~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H 244 (315)
.+...+.|..+|+++.++ .-+|++++... + +.|-..=++-+++.++=.+.|....+... .-+.+-.|
T Consensus 14 ~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-s---------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p--~lyp~n~H 81 (105)
T PF10348_consen 14 HRSALYAHIVLMTLAWVILYPIGLVLGNAR-S---------RWHLPVQTVFLVLMILGLFLGSVYNGSTP--DLYPNNAH 81 (105)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c---------hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCHH
Confidence 356789999999998544 44677765543 2 22333333333333333444433211110 13356799
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 021260 245 HWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 245 ~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
.-+|++++++.+++..+|+..
T Consensus 82 ~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 82 GKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999754
No 40
>PLN02810 carbon-monoxide oxygenase
Probab=90.67 E-value=3.4 Score=36.74 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260 169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 248 (315)
Q Consensus 169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 248 (315)
=|.+|-.+|++++++.-.=-++.+......+ ......|..+=.+.+++.++-...-|-.++. .+ .+=.-.+|.|+|
T Consensus 46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k--~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~-~~-i~nlySLHSWlG 121 (231)
T PLN02810 46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK--EVKKLIHLVLHAIALILGIFGICAAFKNHNE-SG-IANLYSLHSWLG 121 (231)
T ss_pred eeeehHHHHHHHHHHHhhHHHHHhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-CCceeeHHHHHH
Confidence 5899999999998875554444443222111 2356778888777777766555443322222 22 222335899999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 021260 249 RLALFFASVNIVLGIQI 265 (315)
Q Consensus 249 ~~~~~l~~~~i~~Gl~~ 265 (315)
..++++=..|-..|+..
T Consensus 122 l~tv~Lf~lQw~~Gf~~ 138 (231)
T PLN02810 122 IGIISLYGIQWIYGFIV 138 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999843
No 41
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=90.63 E-value=5.2 Score=34.14 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=48.8
Q ss_pred CcccchhhhHHHHHHHHHHHHhhee---ccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 021260 204 NISAHRGIGIFILVLSILQILAFFL---RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGN 270 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~ 270 (315)
....|..+|.++++++.+-.+.|.. +... +.+..-|-|.|.++..|-.++..+.-.+....+
T Consensus 79 ~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-----~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~ 143 (175)
T PF13301_consen 79 ARDRHYRLGFALLAFMGLGALGGQLGTYRQNG-----KLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNR 143 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC-----CCccCchHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 5688999999999999999888742 2211 244456999999999999999999988876433
No 42
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=90.29 E-value=2.1 Score=38.07 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=64.7
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhh-hhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheec--cc--cccCCCCcc
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIP-RYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLY--NK--LNVKNANIS 206 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~a-R~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~--~~--~~~~~~~~~ 206 (315)
++....+|..|-.+|..+.. .|+... .+-+.. .+.-..+|-.+.+..+++-..=++.||... .. .+.+..+--
T Consensus 85 k~~~KliH~~LH~~Alvl~i-~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP 163 (245)
T KOG1619|consen 85 KKVSKLIHLGLHIIALVLAI-IGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMP 163 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhh
Confidence 45567899999999865544 444333 221211 133458999999998888777777776432 11 111234567
Q ss_pred cchhhhHHHHHHHHHHHHhhee
Q 021260 207 AHRGIGIFILVLSILQILAFFL 228 (315)
Q Consensus 207 ~H~~iG~~~~~l~~~Q~~~g~~ 228 (315)
.|..+|+..+++.+.|.++|++
T Consensus 164 ~H~~~Gl~~f~lai~ta~~Gl~ 185 (245)
T KOG1619|consen 164 WHVFLGLAIFILAIVTALTGLL 185 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999984
No 43
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=89.90 E-value=5.8 Score=33.27 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccccccCCCC--cccchhhhHHHHHHHHHHHHhh---------------------e
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNAN--ISAHRGIGIFILVLSILQILAF---------------------F 227 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~--~~~H~~iG~~~~~l~~~Q~~~g---------------------~ 227 (315)
.+|+..-+.-+++.+.|+.+-......... +.. ...|.++|++++++.++=.+.. .
T Consensus 8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~-~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T PF01292_consen 8 ILHWLNALSFIALIATGLWIHFPPPGLYFG-DFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc-ccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 467777766666666676664332221111 111 5789999999998887666555 1
Q ss_pred eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 228 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 228 ~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
.+. +.+....++..-+..-.+.+++..+.+.+|+-++.
T Consensus 87 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~ 124 (182)
T PF01292_consen 87 LRG--KPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF 124 (182)
T ss_pred hcC--CCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222334555555777778888888888888753
No 44
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=89.20 E-value=3.8 Score=35.54 Aligned_cols=28 Identities=14% Similarity=0.066 Sum_probs=22.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 240 WNWYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 240 ~~~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
+|..-++.-.+++++..+.+.+|+.+..
T Consensus 112 ~n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 112 YNPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777888899999999988764
No 45
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=88.89 E-value=2 Score=36.19 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=76.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhh---cc---CCCChhhhhhHHHHHHHHHHHHHHHhhhhee---------------
Q 021260 136 EKKNHGALGMIGWGIILPVGAIIPRY---FK---HKDPLWYYLHAIIQLVGFIFGLATVLLGIQL--------------- 194 (315)
Q Consensus 136 ~~~~Hg~lm~~aw~~l~p~gil~aR~---~k---~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~--------------- 194 (315)
....| +++++++.+++..|..+... .. ......+.+|..+.++-.++.+.=+...+..
T Consensus 8 ~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 8 TRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 34556 46777888888888876521 11 1224568899988877655555444444433
Q ss_pred ---cc---ccccCCCCcccchhhhHHHHHHHHHHHHhheec--------cCC---CCCCcccccchhHHHHHHHHHHHHH
Q 021260 195 ---YN---KLNVKNANISAHRGIGIFILVLSILQILAFFLR--------PSK---DSKFRRFWNWYHHWFGRLALFFASV 257 (315)
Q Consensus 195 ---~~---~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r--------~~~---~~~~r~~~~~~H~~~G~~~~~l~~~ 257 (315)
.. ..+.....+...+..-.++..+.+++++.|+.. +.. ..........+|.+.+.+++++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011112345667777778888888899988655 111 1123455677898888888877766
Q ss_pred HHHHhhhh
Q 021260 258 NIVLGIQI 265 (315)
Q Consensus 258 ~i~~Gl~~ 265 (315)
=++.++..
T Consensus 167 Hi~~a~~~ 174 (188)
T PF00033_consen 167 HIYAAIFH 174 (188)
T ss_dssp HHHHHHHB
T ss_pred HHHHHHHH
Confidence 66655543
No 46
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=88.69 E-value=5.2 Score=34.30 Aligned_cols=62 Identities=23% Similarity=0.201 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 170 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 170 f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
..+|+.+-++.+...+.|...+.....+.. ...+...|..+|+.++.++++-.+..+.-|.+
T Consensus 13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~-~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 13 IALHWLMALLVIGAFALGELMGFLPRGPGL-YFLLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 467887766655555556666554443311 11467899999999999999999988765443
No 47
>PRK11513 cytochrome b561; Provisional
Probab=88.05 E-value=2.2 Score=36.43 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=38.2
Q ss_pred CcccchhhhHHHHHHHHHHHHhheeccCCCCCCc-ccc-cchhHHHHHHHHHHHHHHHHHhhhh
Q 021260 204 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFR-RFW-NWYHHWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r-~~~-~~~H~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
+...|..+|+++++++++-.+..+..+.+..... +.| +..=+..-.++|++-++...+|+..
T Consensus 41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~ 104 (176)
T PRK11513 41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVM 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999887543321111 222 1111222355666666666666653
No 48
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=86.72 E-value=14 Score=30.00 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhh
Q 021260 138 KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLL 190 (315)
Q Consensus 138 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l 190 (315)
.+...++.++-.++. .|....|--| .+.|+-+|+.++.+..+-+++
T Consensus 6 ~l~a~~~~~s~~ll~-~g~~~Ir~~~------~~~Hr~~Ml~a~~ls~lFlv~ 51 (133)
T PF04238_consen 6 DLNAVLNAISAVLLL-IGWYFIRRGR------IKLHRKLMLTAFVLSALFLVS 51 (133)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHH
Confidence 455677777755554 6666665221 378999998877765544333
No 49
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=86.37 E-value=0.86 Score=28.37 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=22.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGIQI 265 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~ 265 (315)
|+.+...|+|+|.++-++-.+-+++|..+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45667789999988888888888887554
No 50
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=85.99 E-value=3.4 Score=32.25 Aligned_cols=49 Identities=35% Similarity=0.442 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHhheeccCCC----CCCcccccchhHHHHHHHHHHHHHHHH
Q 021260 211 IGIFILVLSILQILAFFLRPSKD----SKFRRFWNWYHHWFGRLALFFASVNIV 260 (315)
Q Consensus 211 iG~~~~~l~~~Q~~~g~~r~~~~----~~~r~~~~~~H~~~G~~~~~l~~~~i~ 260 (315)
+|.+.++++.++.+.+ .|+..- .........+|+++|+.+++++.+=..
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777 454321 111122345999999999998877644
No 51
>PF13630 SdpI: SdpI/YhfL protein family
Probab=84.04 E-value=1.6 Score=31.40 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.9
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260 233 DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 268 (315)
Q Consensus 233 ~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~ 268 (315)
..+....|+..|+..|...++.|++.+..|+.....
T Consensus 16 t~~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~~ 51 (76)
T PF13630_consen 16 TMKSDENWKKAHRFAGKIFIIGGIVLLIIGIIILFL 51 (76)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999999998886643
No 52
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=83.67 E-value=12 Score=31.21 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=65.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhccCC--CChh--hhhhHHHHHHHHHHHHHHHhhh--------------------
Q 021260 136 EKKNHGALGMIGWGIILPVGAIIPRYFKHK--DPLW--YYLHAIIQLVGFIFGLATVLLG-------------------- 191 (315)
Q Consensus 136 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~--~~~w--f~~H~~~~~~~~~~~~~g~~l~-------------------- 191 (315)
.+..| +++++++.+++..|..+....+.. ...+ +.+|..+..+-.++.+.-+...
T Consensus 6 ~r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 6 TRILH-WLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 34556 456667777777887654322221 1122 6789987766444443333322
Q ss_pred heeccccccCCCCccc-chhhhHHHHHHHHHHHHhheec--c--C------CCCCCcccccchhHHHHHHHHHHHHHHHH
Q 021260 192 IQLYNKLNVKNANISA-HRGIGIFILVLSILQILAFFLR--P--S------KDSKFRRFWNWYHHWFGRLALFFASVNIV 260 (315)
Q Consensus 192 ~~~~~~~~~~~~~~~~-H~~iG~~~~~l~~~Q~~~g~~r--~--~------~~~~~r~~~~~~H~~~G~~~~~l~~~~i~ 260 (315)
....++.+. ...+++ -.....++.++..++++.|++. . . .........+.+|.+.+..++++..+=+.
T Consensus 85 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~ 163 (182)
T PF01292_consen 85 FLLRGKPPP-AGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVY 163 (182)
T ss_pred HHhcCCCCC-CCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111121 122232 3334666777888899888643 1 1 12223455677888888877765555444
Q ss_pred Hhh
Q 021260 261 LGI 263 (315)
Q Consensus 261 ~Gl 263 (315)
..+
T Consensus 164 ~a~ 166 (182)
T PF01292_consen 164 AAL 166 (182)
T ss_pred HHH
Confidence 443
No 53
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=83.36 E-value=8.4 Score=33.62 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=33.1
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhH
Q 021260 234 SKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGY 276 (315)
Q Consensus 234 ~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~y 276 (315)
.+.+.-||..|+++|-.+++.+.+....+........-+...+
T Consensus 39 ~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~ 81 (204)
T COG5658 39 SPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVA 81 (204)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHH
Confidence 3456779999999999999999999998877776644444433
No 54
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=82.89 E-value=3.8 Score=37.59 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhhheeccccccC-CCCcccchhhhHHHHHHHHHHHHhheec---cCCCCCCcccccchhHHHHHH
Q 021260 175 IIQLVGFIFGLATVLLGIQLYNKLNVK-NANISAHRGIGIFILVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRL 250 (315)
Q Consensus 175 ~~~~~~~~~~~~g~~l~~~~~~~~~~~-~~~~~~H~~iG~~~~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~ 250 (315)
.+..+.++++++|++-++....+.+.. .++.--|-..|+...+-.++-.+.-+.| ..-.++.|+.|. ..
T Consensus 156 ~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~-------~l 228 (347)
T PF10951_consen 156 ILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWP-------KL 228 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhH-------HH
Confidence 445556777888888877655433221 2356678888888887666555544444 333444455444 45
Q ss_pred HHHHHHHHHHHhhhhc
Q 021260 251 ALFFASVNIVLGIQIG 266 (315)
Q Consensus 251 ~~~l~~~~i~~Gl~~~ 266 (315)
++++|.+++..|+...
T Consensus 229 Vl~mGsi~~l~Gl~vl 244 (347)
T PF10951_consen 229 VLVMGSISILWGLYVL 244 (347)
T ss_pred HHHHhhHHHHhhhheE
Confidence 6778888888888765
No 55
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=82.24 E-value=28 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=26.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
...+|+..+..-.++++++.+.+.+|+.++
T Consensus 101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 101 AGKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999888899999999999999997
No 56
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=80.96 E-value=12 Score=33.04 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=26.5
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
...+|+..+.....+++++.+.+.+|+-++
T Consensus 106 ~gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 106 VGKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999986
No 57
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=80.83 E-value=32 Score=30.07 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=27.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHH
Q 021260 239 FWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 289 (315)
Q Consensus 239 ~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~y~~~~~~~~~~~~~ 289 (315)
.|+.+|+. .+.+++++.+=.+..... ...-.+.|+++++.++...+.
T Consensus 145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~k~---~~~~~~~y~~~~~~ll~~R~~ 191 (205)
T PRK05419 145 RWQKLHRL-VYLIAILAPLHYLWSVKS---DSPEPLIYAAIVAVLLALRLK 191 (205)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHH
Confidence 68999987 566666777775544321 111235676666555554444
No 58
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=79.06 E-value=7.8 Score=28.83 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 235 KFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 235 ~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+.|+ +...|+.+|....+...+-+.+|+.+.
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~~ 86 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFFS 86 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455 666999999999999999888887653
No 59
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=77.39 E-value=8.8 Score=30.27 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=41.2
Q ss_pred cccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 205 ISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 205 ~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
.-.|-++|.++.+++++-.+.++.+|.+.. ++.|.+++..+++..+.++.+=...-
T Consensus 28 riinliiG~vT~l~VLvtii~afvf~~~~p------~p~~iffavcI~l~~~s~~lLI~WYR 83 (118)
T PF10856_consen 28 RIINLIIGAVTSLFVLVTIISAFVFPQDPP------KPLHIFFAVCILLICISAILLIFWYR 83 (118)
T ss_pred EEEEeehHHHHHHHHHHHHhheEEecCCCC------CceEEehHHHHHHHHHHHHhheeehh
Confidence 356788888888888888888888775532 23588888888888777777665543
No 60
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=74.92 E-value=54 Score=28.19 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=45.3
Q ss_pred ccchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheecc
Q 021260 132 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYN 196 (315)
Q Consensus 132 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~ 196 (315)
+..+.+..|-..+.++...+.-.++....|+..+++.+-.+-...-.+|+++..+|++.|....+
T Consensus 8 ~~~ri~yiHVp~a~~~~~~~~~~~~~s~~yL~~~~~~~D~la~~~a~iGf~f~tl~LitGaiWak 72 (184)
T TIGR01191 8 ASVRIMYVHVPAAWMAIGVYIMMAIASFIFLVWKHPLSDLAAKAAAPIGAVFTLIALVTGSLWGK 72 (184)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999888888887766666666764444455445555556678888888888866443
No 61
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=68.59 E-value=53 Score=33.85 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHhheeccC-CCCCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260 216 LVLSILQILAFFLRPS-KDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 263 (315)
Q Consensus 216 ~~l~~~Q~~~g~~r~~-~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl 263 (315)
+++.++|.+.|+...- ..-+.|....-+-..+|+.++++|.+-..++.
T Consensus 450 l~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 450 LLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456678877753211 11111222223334577777777777666654
No 62
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=66.67 E-value=11 Score=21.69 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=14.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 021260 241 NWYHHWFGRLALFFASVNIVLGIQ 264 (315)
Q Consensus 241 ~~~H~~~G~~~~~l~~~~i~~Gl~ 264 (315)
+.+|+|++-+.-++-++-+.+|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666655666666654
No 63
>PRK10588 hypothetical protein; Provisional
Probab=66.28 E-value=17 Score=27.82 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhhe-eccCCCCCCccccc-chhHHHHHHHHHHH
Q 021260 178 LVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWN-WYHHWFGRLALFFA 255 (315)
Q Consensus 178 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~-~~H~~~G~~~~~l~ 255 (315)
.+.+++++.-..+.+..-+... ++..+...++|..++..++.-.+.|+ ++|++ ..|+ .+|-++|+.+++.|
T Consensus 19 aLSliLAl~la~~v~w~P~~fa--~~~~~~~~~~~~lliwavc~g~IhGVGF~Pr~-----~~Wq~lFsP~~a~~iL~~g 91 (97)
T PRK10588 19 ALSLVMALLLAGCMFWDPSRFA--AKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQK-----VLWQGIFCPLPADIVLIVG 91 (97)
T ss_pred HHHHHHHHHHHHHHHcCHHHHH--HHcCCccHHHHHHHHHHHHHHHhhhcccchhH-----HHHHHHHhhHHHHHHHHHH
Confidence 3444444443334333333322 24667788999999988888888775 45543 5555 46778888887765
Q ss_pred HH
Q 021260 256 SV 257 (315)
Q Consensus 256 ~~ 257 (315)
..
T Consensus 92 ~~ 93 (97)
T PRK10588 92 LI 93 (97)
T ss_pred HH
Confidence 44
No 64
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=65.61 E-value=19 Score=27.36 Aligned_cols=50 Identities=12% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCcccchhhhHHHHHHHHHHHHhhe-eccCCCCCCccccc-chhHHHHHHHHHHHHH
Q 021260 203 ANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWN-WYHHWFGRLALFFASV 257 (315)
Q Consensus 203 ~~~~~H~~iG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~-~~H~~~G~~~~~l~~~ 257 (315)
+..+...++|..++..++.-.+.|+ +||++ ..|+ .++-++|+.+++.+..
T Consensus 38 ~~g~~~~~~~~lliwavc~g~IhGVGF~Pr~-----~~Wq~lF~P~~a~~iLi~~l~ 89 (93)
T TIGR02112 38 AIGGFNAVLALLMIWAVCILWIHGVGFRPRS-----TLWQLLFSPILGYIILIYLLI 89 (93)
T ss_pred HcCCccHHHHHHHHHHHHHHHHhhccccchH-----HHHHHHHhhHHHHHHHHHHHH
Confidence 3567778999999988888888776 56544 4555 4677888887765543
No 65
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.92 E-value=80 Score=30.09 Aligned_cols=54 Identities=6% Similarity=0.137 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhh
Q 021260 138 KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGI 192 (315)
Q Consensus 138 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~ 192 (315)
.-+..+.-.||=+++-.|+....+.+.. +.+...|..+..++.+..+.++....
T Consensus 186 ~~~w~FNP~aWQllFv~G~~~g~~~~~~-~~~~~~~~~l~~la~~~~l~~~~~~~ 239 (358)
T PF10129_consen 186 GGGWFFNPFAWQLLFVLGLWLGWGWRRG-RRFLPRRRWLVWLAVAYVLFAFFWRL 239 (358)
T ss_pred ccccccChHHHHHHHHHHHHHhcccccc-ccccccchHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999988765553 34567888888887776666655544
No 66
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=64.54 E-value=24 Score=26.14 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhhe-eccCCCCCCccccc-chhHHHHHHHHHHH
Q 021260 178 LVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWN-WYHHWFGRLALFFA 255 (315)
Q Consensus 178 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~-~~H~~~G~~~~~l~ 255 (315)
.+.+++++.-..+.+..-+... ++..+...+.+..++..++.-.+.|+ ++|++ ..|+ .++-+.++.+++.+
T Consensus 4 ~LSlilAl~la~~v~~~P~~fA--~~~g~~~~~~~~ll~wavc~~~IhGvGF~Pr~-----~~Wr~lFsP~~a~~il~~~ 76 (82)
T PF09600_consen 4 ALSLILALALAACVFWDPNRFA--AATGGFSHWLAPLLIWAVCAGWIHGVGFRPRS-----WIWRLLFSPLIAWIILIYG 76 (82)
T ss_pred HHHHHHHHHHHHHHHcCHHHHH--HHcCCCcHHHHHHHHHHHHHHHhhccccchhH-----HHHHHHHhHHHHHHHHHHH
Confidence 3444444443334344333322 14567778899999988888887775 45543 4455 35667888887777
Q ss_pred HHHH
Q 021260 256 SVNI 259 (315)
Q Consensus 256 ~~~i 259 (315)
.+..
T Consensus 77 l~~~ 80 (82)
T PF09600_consen 77 LILY 80 (82)
T ss_pred HHHH
Confidence 6543
No 67
>CHL00070 petB cytochrome b6
Probab=61.26 E-value=40 Score=29.79 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++..+.|+.+++.+..+. +...-..+.|.+-.-+.++++.+...-+++...-+.+ | ..-+.
T Consensus 45 ~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~ 119 (215)
T CHL00070 45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKP-R----ELTWV 119 (215)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-c----ccCcH
Confidence 444566888887554221 1112345789998888889999998888664222111 1 13478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+.....+
T Consensus 120 ~Gv~l~~l~m~~af~GY~Lpw~q~s 144 (215)
T CHL00070 120 TGVVLAVLTVSFGVTGYSLPWDQIG 144 (215)
T ss_pred HHHHHHHHHHHHHHccccCCcchhh
Confidence 9999999999999999998876554
No 68
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=61.22 E-value=73 Score=29.23 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcc------CCC--cchhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 021260 242 WYHHWFGRLALFFASVNIVLGIQIGY------AGN--EWKIGYGFLLAVVLLAVIVLETLSWMKKR 299 (315)
Q Consensus 242 ~~H~~~G~~~~~l~~~~i~~Gl~~~~------~~~--~~~~~y~~~~~~~~~~~~~le~~~~~~~~ 299 (315)
++=..++.+++++|..|..+=++..+ .|+ +|..++++.+. ++++.+|+++-..+-
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vT---LVWLYlEILRLL~~l 271 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVT---LVWLYLEILRLLSKL 271 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45666777777777777777766543 233 46667776554 788999998865543
No 69
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.49 E-value=12 Score=29.94 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 021260 274 IGYGFLLAVVLLAVIV 289 (315)
Q Consensus 274 ~~y~~~~~~~~~~~~~ 289 (315)
|.+|++++++.++.++
T Consensus 69 Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4666666665555444
No 70
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=59.80 E-value=56 Score=25.41 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 021260 238 RFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEW-KIGYGFLLAVVLLAVIVLETLSWMKKRSDKT 303 (315)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~-~~~y~~~~~~~~~~~~~le~~~~~~~~~~~~ 303 (315)
...|..|++.-+.+++..++.+..+..+....... .....+++++..+..... .|+.+|+.|+
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ra~m---EWKy~resK~ 88 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFRFFYPYILIFLFLIILFCFRAFM---EWKYDRESKE 88 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHHhcccchh
Confidence 45678999999999999888887776665433111 112222233333333333 4877776654
No 71
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=59.39 E-value=45 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=25.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
...+|+..+..-.++++++.+.+.+|+-+.
T Consensus 104 ~~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 104 TGRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888888888888899999999875
No 72
>PRK03735 cytochrome b6; Provisional
Probab=59.26 E-value=42 Score=29.83 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhheeccc--------------cccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNK--------------LNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~--------------~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++..+.|+.+.+.+..+ .....-..+.|.+=.-+.++++.++..-+++...-+.+ | ..-++
T Consensus 53 ~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~ 127 (223)
T PRK03735 53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKP-R----ELNWV 127 (223)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCC-C----CceeH
Confidence 44456688888754321 11112345789998888889999998888654211111 1 13478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+..+..+
T Consensus 128 ~Gv~l~~l~~~~af~GY~Lpw~q~s 152 (223)
T PRK03735 128 VGVLIFFVTVGLGFTGYLLPWDQKA 152 (223)
T ss_pred HHHHHHHHHHHHHhccccCCcccch
Confidence 9999999999999999999876554
No 73
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=58.21 E-value=10 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.1
Q ss_pred CcccchhhhHHHHHHHHHHHHhhe
Q 021260 204 NISAHRGIGIFILVLSILQILAFF 227 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~ 227 (315)
+...|.|+|+++..++++-.+.|.
T Consensus 4 ~~~~H~W~Gl~~g~~l~~~~~tG~ 27 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLFVIFLTGA 27 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457899999999999988888873
No 74
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=58.03 E-value=1.8e+02 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.6
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHh
Q 021260 200 VKNANISAHRGIGIFILVLSILQILA 225 (315)
Q Consensus 200 ~~~~~~~~H~~iG~~~~~l~~~Q~~~ 225 (315)
+.|..+..|.+.|+..+++.++..+.
T Consensus 71 GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 71 GLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33567899999999999999988765
No 75
>PRK13673 hypothetical protein; Provisional
Probab=57.80 E-value=95 Score=24.70 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHH
Q 021260 170 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR 249 (315)
Q Consensus 170 f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~ 249 (315)
..+|+.+-..-++..+.|+.+-+...++.+ -.+..-..+|+.+.. ..+.... |-+|.+ .-|..++.
T Consensus 31 ki~hMilRLfyil~iiTG~~l~~~~~~~~~---~l~~~K~l~gi~vIg--~mEm~l~--r~kk~k-------~~~~~~~~ 96 (118)
T PRK13673 31 KILHMILRLFYILIIITGFWLLIRSFGSNH---MLYILKMLLGIIVIG--LMEMSLA--KRKKGK-------PTGGFWWI 96 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHH--HHHHHHH--HHHcCC-------CcccHHHH
Confidence 368999988888877888777654432211 122333445554443 3454443 322221 23434444
Q ss_pred HHHHHHHHHHHHhhhhc
Q 021260 250 LALFFASVNIVLGIQIG 266 (315)
Q Consensus 250 ~~~~l~~~~i~~Gl~~~ 266 (315)
.+.+ -++++.+|+.+.
T Consensus 97 ~ii~-lvlti~lG~~Lp 112 (118)
T PRK13673 97 FIIV-LVLTILLGLILP 112 (118)
T ss_pred HHHH-HHHHHHHHHHhc
Confidence 4443 367778888765
No 76
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=56.20 E-value=95 Score=28.63 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=52.8
Q ss_pred CcccchhhhHHHHHHHHHHHHhhee---ccCC-----CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC--CCcch
Q 021260 204 NISAHRGIGIFILVLSILQILAFFL---RPSK-----DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA--GNEWK 273 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~~---r~~~-----~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~--~~~~~ 273 (315)
.-..|..+|+...++..+-.++-+. +|++ +.+.++.=+..-++....+.++|.+.++..++.-.. +...+
T Consensus 42 ~ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~pi 121 (296)
T PF10361_consen 42 PIGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPI 121 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccH
Confidence 4568999999888776655543321 2222 222333334466788889999999999999886532 22223
Q ss_pred hhHHHHH--HHHHHHHHHHH-HHHH
Q 021260 274 IGYGFLL--AVVLLAVIVLE-TLSW 295 (315)
Q Consensus 274 ~~y~~~~--~~~~~~~~~le-~~~~ 295 (315)
++.+.+. .....+.++=| ++.|
T Consensus 122 il~sfF~~l~~~~~lA~vWE~VRhW 146 (296)
T PF10361_consen 122 ILQSFFWYLMQPGTLAAVWEAVRHW 146 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333322 23334555556 4445
No 77
>CHL00070 petB cytochrome b6
Probab=56.01 E-value=35 Score=30.10 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhHHHHHHHHHHHHHHHhhhheecccc
Q 021260 136 EKKNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKL 198 (315)
Q Consensus 136 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~ 198 (315)
....=|.+..+++.+.+-.|++.+-|+.+. .--| ..+|...-.+-+++..+=+.=++.. +..
T Consensus 32 ~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~-gsY 110 (215)
T CHL00070 32 IFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLT-GGF 110 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh
Confidence 344558888899999999999988776653 1123 3555543222222222111112221 111
Q ss_pred ccCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 199 NVKNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 199 ~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
+ .....-=++|++++++.....+.|++.|.-
T Consensus 111 k---~pre~~W~~Gv~l~~l~m~~af~GY~Lpw~ 141 (215)
T CHL00070 111 K---KPRELTWVTGVVLAVLTVSFGVTGYSLPWD 141 (215)
T ss_pred c---CCcccCcHHHHHHHHHHHHHHHccccCCcc
Confidence 1 123344689999999999999999988764
No 78
>PRK03735 cytochrome b6; Provisional
Probab=55.12 E-value=38 Score=30.09 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=54.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhHHHHHHHHHHHHHHHhhhheecccc
Q 021260 136 EKKNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKL 198 (315)
Q Consensus 136 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~ 198 (315)
....=|.+..+++.+..-.|++.+-|+.+. .--| ..+|..--.+-++++.+=+.=++.. +..
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~-gsY 118 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFT-GGY 118 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHH
Confidence 334448899999999999999988776652 1123 2455532222122211111112211 111
Q ss_pred ccCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 199 NVKNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 199 ~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
+ .....-=++|++++++.....+.|++.|.-
T Consensus 119 k---~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~ 149 (223)
T PRK03735 119 K---KPRELNWVVGVLIFFVTVGLGFTGYLLPWD 149 (223)
T ss_pred c---CCCCceeHHHHHHHHHHHHHHhccccCCcc
Confidence 1 122344689999999999999999888765
No 79
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=53.51 E-value=66 Score=29.63 Aligned_cols=90 Identities=14% Similarity=-0.012 Sum_probs=56.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHH
Q 021260 168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 247 (315)
.+-+.||.+-.+..++.++.++..+...+.. ..=.+.....+++..+|.++|...-...- ..+..-..|..+
T Consensus 66 ~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~ 137 (302)
T PF02628_consen 66 WIEWGHRLLAGLVGLLILALAVWAWRKRRIR-------RRLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLL 137 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------cchHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 3457899887776665555555555322221 22237777788889999998854322210 134446789999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 021260 248 GRLALFFASVNIVLGIQI 265 (315)
Q Consensus 248 G~~~~~l~~~~i~~Gl~~ 265 (315)
+.+++.+.......-...
T Consensus 138 a~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 138 ALLIFALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 988888777666655444
No 80
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=51.94 E-value=44 Score=23.08 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccC-------CCChhhhhhHHHHHHHHH
Q 021260 142 ALGMIGWGIILPVGAIIPRYFKH-------KDPLWYYLHAIIQLVGFI 182 (315)
Q Consensus 142 ~lm~~aw~~l~p~gil~aR~~k~-------~~~~wf~~H~~~~~~~~~ 182 (315)
.++.+++.+++-.|+++.+...+ .++.|..+|...-...++
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~ 54 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLI 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHH
Confidence 35566666666667666544322 124566666655544433
No 81
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=51.84 E-value=40 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHH
Q 021260 269 GNEWKIGYGFLLAVVLLAVIVLETLS 294 (315)
Q Consensus 269 ~~~~~~~y~~~~~~~~~~~~~le~~~ 294 (315)
++.|..+.|++++.+++..+|+-..+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaK 39 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAK 39 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 56788888887777776666655444
No 82
>COG2717 Predicted membrane protein [Function unknown]
Probab=51.75 E-value=19 Score=31.64 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=34.2
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhccC-CCChhhhhhHHHHH
Q 021260 135 REKKNHGALGMIGWGIILPVGAIIPRYFKH-KDPLWYYLHAIIQL 178 (315)
Q Consensus 135 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~-~~~~wf~~H~~~~~ 178 (315)
.....=..+-++||.++.|.++-..+..+. .++.|.++|+..=.
T Consensus 111 ~~~rpyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl 155 (209)
T COG2717 111 LLKRPYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYL 155 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555778899999999999998887654 35789999997653
No 83
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=51.58 E-value=58 Score=24.80 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhhheecccc---ccCCCCcccchhhhHHHHHHHHH
Q 021260 174 AIIQLVGFIFGLATVLLGIQLYNKL---NVKNANISAHRGIGIFILVLSIL 221 (315)
Q Consensus 174 ~~~~~~~~~~~~~g~~l~~~~~~~~---~~~~~~~~~H~~iG~~~~~l~~~ 221 (315)
..+-.++.+.++.+...|+...... .........|..+|..++.++.+
T Consensus 6 ~wll~~G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 6 FWLLVLGLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666543322 11113456799999988888777
No 84
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=51.50 E-value=1.3e+02 Score=24.26 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=31.1
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcc-hhhHHHHHHHHHHHHHHHHHHH
Q 021260 236 FRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEW-KIGYGFLLAVVLLAVIVLETLS 294 (315)
Q Consensus 236 ~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~-~~~y~~~~~~~~~~~~~le~~~ 294 (315)
.++.++.+..+.||.++.+=+..+.++. .+ ....++.+.+.-++++++....
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~-------~~~~~i~g~~~~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ-------SILSIIIGLLLFLVGVIYIILGFFC 109 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677788889999988765444444444 22 1233444445556666666544
No 85
>PLN02631 ferric-chelate reductase
Probab=50.11 E-value=63 Score=33.74 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCcccchhhhHHHHHHHHHHHHhheec---cCCCCCCccccc--chhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 203 ANISAHRGIGIFILVLSILQILAFFLR---PSKDSKFRRFWN--WYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 203 ~~~~~H~~iG~~~~~l~~~Q~~~g~~r---~~~~~~~r~~~~--~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
.+...|.|+|-+++++.++-.+..... .+.-. .+..|+ +.-.+.|.+.++++.+-+++.+....
T Consensus 187 ~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~-~~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~R 255 (699)
T PLN02631 187 SSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFR 255 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-hhhhcccccchHHHHHHHHHHHHHHHHhccHHHH
Confidence 567789999999999988887655322 11110 011111 11236788888877777777776553
No 86
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=48.94 E-value=1.2e+02 Score=23.12 Aligned_cols=72 Identities=8% Similarity=0.174 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhh---eeccCCCCCCcccccchhHHH
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF---FLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g---~~r~~~~~~~r~~~~~~H~~~ 247 (315)
+-|..--+++++++++.|.+... +..+. ...-.+++++.+.|.+.= |++-+. +.+..||....++
T Consensus 7 ~~yviGFiLSiiLT~i~F~~v~~--~~~~~--------~~~~~~i~~lA~iQi~VqL~~FLHm~~--~~~~~~n~~~l~f 74 (94)
T TIGR02901 7 WKHVNGFILSLLLTFLALWVALY--SDLPL--------AMGLTIIIIFAFIQAGLQLIMFMHAGE--SEDGKVQIYNIYY 74 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--ccCCh--------hHHHHHHHHHHHHHHHHHHHHheeecC--CcccchHHHHHHH
Confidence 34667777788888888877543 22221 133345567788898753 344332 2334588888777
Q ss_pred HHHHHHH
Q 021260 248 GRLALFF 254 (315)
Q Consensus 248 G~~~~~l 254 (315)
|..+.++
T Consensus 75 t~~i~~i 81 (94)
T TIGR02901 75 SAFIALV 81 (94)
T ss_pred HHHHHHH
Confidence 7765543
No 87
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=47.99 E-value=22 Score=22.55 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=10.5
Q ss_pred HHHHHHHhhhCCCCCC
Q 021260 289 VLETLSWMKKRSDKTT 304 (315)
Q Consensus 289 ~le~~~~~~~~~~~~~ 304 (315)
.+-+.+|..|+++.++
T Consensus 27 ~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 27 LFIYRKWQARKRALQR 42 (43)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3346789888766554
No 88
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=47.27 E-value=76 Score=25.13 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhh-eecc
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF-FLRP 230 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g-~~r~ 230 (315)
.+|.+++.++.++++++++.+++..... ..-.|-.++..+++..+.-.++- +.|.
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~-----p~p~~iffavcI~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDP-----PKPLHIFFAVCILLICISAILLIFWYRQ 84 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCC-----CCceEEehHHHHHHHHHHHHhheeehhc
Confidence 6788888888888888888877765432 23556677766666555555443 3443
No 89
>PRK10209 acid-resistance membrane protein; Provisional
Probab=47.15 E-value=1.8e+02 Score=24.84 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 021260 209 RGIGIFILVLSILQILAF 226 (315)
Q Consensus 209 ~~iG~~~~~l~~~Q~~~g 226 (315)
-.+|...++-.+.|.+..
T Consensus 51 ~~~g~~ll~~Gi~~l~~~ 68 (190)
T PRK10209 51 TVVGILLICSGIALIVGL 68 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666543
No 90
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=46.61 E-value=2.3e+02 Score=27.79 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHH----HHhhhheeccccccCCCCcccchhhh
Q 021260 137 KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLA----TVLLGIQLYNKLNVKNANISAHRGIG 212 (315)
Q Consensus 137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~----g~~l~~~~~~~~~~~~~~~~~H~~iG 212 (315)
...|-++-.++-++-+-+.++=.++.|..++.|.++=+...-+-.+...+ |.++.+.....++. .-..+|
T Consensus 10 ~~~Hi~fv~~tiGl~~~~~i~e~~~~rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~f~~g~~wp~------f~~~~g 83 (436)
T PF01654_consen 10 AGFHILFVPLTIGLALLLAILETLYYRTGDPRYDRLARFWGKLFAINFAVGVVTGTVMEFQFGTNWPR------FSRFVG 83 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHH
Confidence 45677665554444444455555778887777754444333222222223 34443333333332 112233
Q ss_pred HHHH--------HHHHHHHH-hhee-ccCCCCCCcccccchhHHHHHHHHHHHHHHHHH------------hhhhc-cCC
Q 021260 213 IFIL--------VLSILQIL-AFFL-RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVL------------GIQIG-YAG 269 (315)
Q Consensus 213 ~~~~--------~l~~~Q~~-~g~~-r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~------------Gl~~~-~~~ 269 (315)
=+.. ..++++.. +|++ .-.. +.-+..|..+|..+-+-+....+. |..+. .++
T Consensus 84 ~vfg~pla~E~l~aFflE~~flgiy~fgW~-----rl~~~~H~~~~~~vaig~~~Sa~~I~~~nswM~tP~G~~~~~~~g 158 (436)
T PF01654_consen 84 DVFGPPLAIEGLFAFFLEATFLGIYLFGWD-----RLSPKVHLFIGWLVAIGAWLSAFWILAANSWMQTPVGFELNPVNG 158 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCCeeEEEcCCC
Confidence 3333 33344432 3332 2222 123457999998776655544332 33321 011
Q ss_pred C--------------cc-hhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 021260 270 N--------------EW-KIGYGFLLAVVLLAVIVLETLSWMKKRSD 301 (315)
Q Consensus 270 ~--------------~~-~~~y~~~~~~~~~~~~~le~~~~~~~~~~ 301 (315)
+ .| .....+..++....++++-+..|+-.|++
T Consensus 159 ~~~~~~~~~~~~NP~~~~~~~H~~~aa~~~g~f~v~~v~A~~llr~~ 205 (436)
T PF01654_consen 159 RAELTDFWAAFFNPSFWPRFLHMLLAAYLTGGFVVAGVSAYYLLRGR 205 (436)
T ss_pred eEEeccHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 01 12334566667777777777777666544
No 91
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=45.82 E-value=2e+02 Score=24.91 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=39.1
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHH-----HHhh--eeccCCC-CCC
Q 021260 165 KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQ-----ILAF--FLRPSKD-SKF 236 (315)
Q Consensus 165 ~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q-----~~~g--~~r~~~~-~~~ 236 (315)
.+|+|.++--.+-.++++..+-|+..-| ..+ -+..|++++++..+- .++. +.|+..+ +++
T Consensus 91 tdp~lm~lDssLl~lg~~aLlsgitaff-~~n-----------A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr 158 (226)
T COG4858 91 TDPWLMWLDSSLLFLGAMALLSGITAFF-QKN-----------AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQR 158 (226)
T ss_pred CCceEEEecccHHHHHHHHHHHHHHHHH-hcC-----------CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Confidence 3456666665555555444444433211 111 224566666544321 1111 1255554 334
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhh
Q 021260 237 RRFWNWYHHWFGRLALFFASVNIVLGI 263 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl 263 (315)
.+.|+.+-...+-.++-+++. +.+++
T Consensus 159 ~~~~K~~lv~~~sm~lWi~v~-i~t~~ 184 (226)
T COG4858 159 PGTWKYLLVAVLSMLLWIAVM-IATVF 184 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 456676666555544444433 44443
No 92
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=45.32 E-value=98 Score=26.93 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhH
Q 021260 180 GFIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH 245 (315)
Q Consensus 180 ~~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~ 245 (315)
-++..+.|+.+++.+..+. ....-..+.|.+-.-..++++.+..+-+++...-+.+ | ..-+
T Consensus 33 ~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~p-r----e~~W 107 (200)
T cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKP-R----ELTW 107 (200)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h----HHHH
Confidence 3445567888888654321 1112345678887788888888888777654211111 1 2458
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 246 WFGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 246 ~~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
+.|.+++++.++..++|..+..+..+
T Consensus 108 ~~G~~l~~l~~~~af~GY~Lpw~q~s 133 (200)
T cd00284 108 VIGVILLLLTMATAFMGYVLPWGQMS 133 (200)
T ss_pred HHHHHHHHHHHHHHHcccccCchhhh
Confidence 89999999999999999998876544
No 93
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=45.30 E-value=22 Score=33.07 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=6.6
Q ss_pred HHHHhhhCCCCC
Q 021260 292 TLSWMKKRSDKT 303 (315)
Q Consensus 292 ~~~~~~~~~~~~ 303 (315)
++-||.||++|+
T Consensus 276 YLILRYRRKKKm 287 (299)
T PF02009_consen 276 YLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHhhh
Confidence 345666665543
No 94
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=45.10 E-value=35 Score=23.49 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 021260 245 HWFGRLALFFASVNIVLGIQ 264 (315)
Q Consensus 245 ~~~G~~~~~l~~~~i~~Gl~ 264 (315)
..+|...++-|+.++..++.
T Consensus 26 ~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 26 IILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444
No 95
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=44.55 E-value=43 Score=26.12 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC-CCC
Q 021260 278 FLLAVVLLAVIVLETLSWMKKR-SDK 302 (315)
Q Consensus 278 ~~~~~~~~~~~~le~~~~~~~~-~~~ 302 (315)
+++++++++-+++.++.||.+| ++|
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4566677777888888997755 444
No 96
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=44.02 E-value=3.9e+02 Score=27.69 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=41.9
Q ss_pred cchhhhhhHHHHHHHHH-HHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhhee
Q 021260 133 SSREKKNHGALGMIGWG-IILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQL 194 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~ 194 (315)
.+.....|+.+..++.. +.+|.+.-++-..+.. +..|-++=+.+..++.++..+|+++|-..
T Consensus 165 q~~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~~LT~GI~~G~~W 228 (628)
T TIGR03145 165 QDIGLIFHPPLLYLGYVGFAVNFAMALAALISGHLDAAVARWSRPWVLLSWVFLTGGIMLGSWW 228 (628)
T ss_pred cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999996 4445544443333321 23566666677788999999999998653
No 97
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.79 E-value=1.7e+02 Score=32.34 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHH
Q 021260 209 RGIGIFILVLSIL 221 (315)
Q Consensus 209 ~~iG~~~~~l~~~ 221 (315)
..+|-+++++.++
T Consensus 629 ~~lgr~~~i~~~~ 641 (1109)
T PRK10929 629 GTLGRLCFILLCG 641 (1109)
T ss_pred ccHHHHHHHHHHH
Confidence 3666666655543
No 98
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=43.58 E-value=71 Score=29.57 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccCCCcchhh
Q 021260 242 WYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIG 275 (315)
Q Consensus 242 ~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~ 275 (315)
+.|..+-.++++.-+.+++.|+.+...+.-|...
T Consensus 64 ~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~~ 97 (308)
T PF14800_consen 64 YFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVGW 97 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhhcccHHHHH
Confidence 6899999999999999999999999777767643
No 99
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=43.49 E-value=90 Score=32.80 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCC-------CChh--hhhhHHHHHHHHHHHHHHHhhhheecccc----cc--CCC
Q 021260 139 NHGALGMIGWGIILPVGAIIPRYFKHK-------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKL----NV--KNA 203 (315)
Q Consensus 139 ~Hg~lm~~aw~~l~p~gil~aR~~k~~-------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~----~~--~~~ 203 (315)
.=+++|+++..+-. ....+.+-|+.. .+.| ...+..--..-+......+.+-...+++. .+ .+.
T Consensus 112 ~~~~~~f~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltGis~e~ 190 (722)
T PLN02844 112 ILAVLLFFLFLAWT-FYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLLGIQFEA 190 (722)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhhhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhCCCHHH
Confidence 33667776655533 222233333321 1233 34444444432333334444444444431 11 135
Q ss_pred CcccchhhhHHHHHHHHHHHHhhee---c-cCCCCCCccccc--chhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 204 NISAHRGIGIFILVLSILQILAFFL---R-PSKDSKFRRFWN--WYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~~---r-~~~~~~~r~~~~--~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
+...|.|+|-+++++.++-.+..+. . ....... ..|. ..-.+.|.+.++++.+-..+.+....
T Consensus 191 ~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~-~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iR 259 (722)
T PLN02844 191 SVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEI-WKWQKTGRIYLAGEIALVTGLVIWITSLPQIR 259 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-hhhccCcchhhhHHHHHHHHHHHHHHhhHHHH
Confidence 6678999999999999888765432 1 1110100 0111 11235677777777666666655443
No 100
>PRK11281 hypothetical protein; Provisional
Probab=43.47 E-value=2.1e+02 Score=31.73 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=6.4
Q ss_pred chhhhHHHHHHH
Q 021260 208 HRGIGIFILVLS 219 (315)
Q Consensus 208 H~~iG~~~~~l~ 219 (315)
...+|-+++++.
T Consensus 649 ~d~lg~~~~i~~ 660 (1113)
T PRK11281 649 DDVIGQAVIIIA 660 (1113)
T ss_pred hhhHHHHHHHHH
Confidence 345666655543
No 101
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=43.02 E-value=97 Score=21.74 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=25.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260 238 RFWNWYHHWFGRLALFFASVNIVLGIQIGYA 268 (315)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~ 268 (315)
+.++.+-+++...++++|.+.+-.+..+.+.
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~n~ 35 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLINQ 35 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677789999999999999988877653
No 102
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=42.67 E-value=2.2e+02 Score=24.36 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC---------CChhhhhhHHHHHHHHHHHHHHHhhhh
Q 021260 137 KKNHGALGMIGWGIILPVGAIIPRYFKHK---------DPLWYYLHAIIQLVGFIFGLATVLLGI 192 (315)
Q Consensus 137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------~~~wf~~H~~~~~~~~~~~~~g~~l~~ 192 (315)
+..| +++.+++.+++..|..+....... ...+..+|..+..+-+++.++=++..+
T Consensus 8 R~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 8 RLFH-WVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 466777777777776554221110 112457888877665544444333333
No 103
>PRK11513 cytochrome b561; Provisional
Probab=42.50 E-value=2.1e+02 Score=24.17 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=34.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheeccccccC--CCCcccchhh-hHHHHHHHHHHHHhheec
Q 021260 168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVK--NANISAHRGI-GIFILVLSILQILAFFLR 229 (315)
Q Consensus 168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~--~~~~~~H~~i-G~~~~~l~~~Q~~~g~~r 229 (315)
.++.+|..+.++.+++++.=++.-+......... +......+.+ -..+.++++++++.|++.
T Consensus 40 ~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~ 104 (176)
T PRK11513 40 LINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVM 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899998887777666555555432211100 0011112222 245667888999999763
No 104
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=42.27 E-value=2.2e+02 Score=24.47 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhhee-ccCCCCCCcccccchhHHHHHHHHHHHHH
Q 021260 179 VGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL-RPSKDSKFRRFWNWYHHWFGRLALFFASV 257 (315)
Q Consensus 179 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~-r~~~~~~~r~~~~~~H~~~G~~~~~l~~~ 257 (315)
.+.+..++|...++..... ....=..+++...+-.++|.+.++- |+.+ . ..-..+.|++
T Consensus 81 ~Gil~i~~gil~~~~~~~~------~~~l~~lia~~~i~~GI~ri~~~~~~~~~~-G-------------~~w~ii~Gvl 140 (185)
T COG3247 81 SGILSILLGILAGFNPGLG------ALVLTYLIAIWFIASGILRIVVAFRLRSLP-G-------------WWWMIISGVL 140 (185)
T ss_pred HHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHccccC-C-------------cHHHHHHHHH
Confidence 3444444555555433211 1122335555555666666666642 2222 1 1125667888
Q ss_pred HHHHhhhhccCCC
Q 021260 258 NIVLGIQIGYAGN 270 (315)
Q Consensus 258 ~i~~Gl~~~~~~~ 270 (315)
.+..|+.+.-+|.
T Consensus 141 ~ii~g~ill~~P~ 153 (185)
T COG3247 141 GIIAGLILLFNPV 153 (185)
T ss_pred HHHHHHHHHHccH
Confidence 8888887776544
No 105
>COG3658 Cytochrome b [Energy production and conversion]
Probab=42.26 E-value=75 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.2
Q ss_pred ccchhhhHHHHHHHHHHHHhheecc
Q 021260 206 SAHRGIGIFILVLSILQILAFFLRP 230 (315)
Q Consensus 206 ~~H~~iG~~~~~l~~~Q~~~g~~r~ 230 (315)
.+|.++|++++.+..+-.+.|..-+
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs 59 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGS 59 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhccccc
Confidence 7899999999999999999887643
No 106
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=39.97 E-value=63 Score=22.15 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHH
Q 021260 180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASV 257 (315)
Q Consensus 180 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~ 257 (315)
++++.++|+.+...-... ....-..+|+..++-.+.|...++- .++.. ..+..+...|...+++|+.
T Consensus 3 Gil~iv~Gi~~l~~p~~~------~~~~~~i~g~~~i~~Gi~~l~~~~~-~~~~~----~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDAS------LAALAIILGIWLIISGIFQLISAFR-RRKGS----KGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh-ccccc----hhhHHHHHHHHHHHHHHHH
Confidence 455555566554332221 2233457788888877888876654 22211 2335677777777777765
No 107
>COG2322 Predicted membrane protein [Function unknown]
Probab=39.64 E-value=2.3e+02 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 241 NWYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 241 ~~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
-..|..+..+...|+..++.+|+....
T Consensus 119 L~~Hi~LA~i~vPLal~al~~a~~~~~ 145 (177)
T COG2322 119 LITHIILAAINVPLALYALILAWKGLY 145 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcchh
Confidence 356888888888888888888877654
No 108
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=39.54 E-value=70 Score=22.03 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=16.3
Q ss_pred CcccccchhHHHHHHHHHHHHHH
Q 021260 236 FRRFWNWYHHWFGRLALFFASVN 258 (315)
Q Consensus 236 ~r~~~~~~H~~~G~~~~~l~~~~ 258 (315)
.|..|+.+|.+.|+..+++..+=
T Consensus 37 ~~~~~~~iH~~~g~~~~~l~~~H 59 (64)
T PF14358_consen 37 NKHFWRNIHLWAGYLFLILIILH 59 (64)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888777766543
No 109
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=37.98 E-value=94 Score=24.90 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=17.5
Q ss_pred ChhhhhhHHHHHH---HHHHHHHHHhhhhe
Q 021260 167 PLWYYLHAIIQLV---GFIFGLATVLLGIQ 193 (315)
Q Consensus 167 ~~wf~~H~~~~~~---~~~~~~~g~~l~~~ 193 (315)
..|.+.|+.-|.. +.++.+.+++..+.
T Consensus 29 g~~M~Ch~tg~a~~~ig~vi~~~~li~~~~ 58 (124)
T PF14387_consen 29 GGHMKCHWTGQAVTGIGAVIAVLSLIMLFV 58 (124)
T ss_pred CCeeeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999988765 45555555555444
No 110
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=37.85 E-value=84 Score=27.36 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=54.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCCC---------------Chh--hhhhHHHHHHHHHHHHHHHhhhheeccccc
Q 021260 137 KKNHGALGMIGWGIILPVGAIIPRYFKHKD---------------PLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLN 199 (315)
Q Consensus 137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~---------------~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~ 199 (315)
...=|.+..+++.+..-.|++.+-|+.+.. --| ..+|...=.+-+++..+=+.=++.. +..+
T Consensus 22 ~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~-gsY~ 100 (200)
T cd00284 22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYY-GSYK 100 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 444588889999999999999887776531 123 3555543222222211111111211 1111
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 200 VKNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 200 ~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
.....-=++|++++++.....+.|++.|.-
T Consensus 101 ---~pre~~W~~G~~l~~l~~~~af~GY~Lpw~ 130 (200)
T cd00284 101 ---KPRELTWVIGVILLLLTMATAFMGYVLPWG 130 (200)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 123445689999999999999999887765
No 111
>COG4244 Predicted membrane protein [Function unknown]
Probab=37.39 E-value=1.4e+02 Score=25.15 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCC--CcccccchhHHHH
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSK--FRRFWNWYHHWFG 248 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~--~r~~~~~~H~~~G 248 (315)
.+|-.+--..+.+.++++++=+...-.-+. .+.+.=-|.=..-.+..++-.+.|++.--+..+ .|+.-.-+|..+|
T Consensus 16 piHP~lVhFpI~l~v~ali~D~~~~~~~~~--~~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG 93 (160)
T COG4244 16 PIHPLLVHFPIGLFVAALIFDLVGFLTGKD--RWFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLG 93 (160)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHHHHHH
Q 021260 249 RLALF-FASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETL 293 (315)
Q Consensus 249 ~~~~~-l~~~~i~~Gl~~~~~~~~~~~~y~~~~~~~~~~~~~le~~ 293 (315)
.++.+ +++.|... +.....+..-...++.++++.....+.+...
T Consensus 94 ~il~~~la~~~~~r-~~~~~~~~~~v~~~~L~lsl~~~~Lv~l~g~ 138 (160)
T COG4244 94 NILLIVLAILTAWR-YVHRNDAVAAVSPAGLLLSLATVLLVALQGY 138 (160)
T ss_pred HHHHHHHHHHHHHH-HHHHcCChhhccHHHHHHHHHHHHHHHHHHH
No 112
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=37.10 E-value=1e+02 Score=23.60 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhe-ec--c----ccccCCCCcccchhhhHHHHHHHHHHHHhh--eeccCCCCCCccc
Q 021260 169 WYYLHAIIQLVGFIFGLATVLLGIQ-LY--N----KLNVKNANISAHRGIGIFILVLSILQILAF--FLRPSKDSKFRRF 239 (315)
Q Consensus 169 wf~~H~~~~~~~~~~~~~g~~l~~~-~~--~----~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g--~~r~~~~~~~r~~ 239 (315)
....|+.+-..++++.++=.+.-.. .. + .....+...+.-...|++.++++++-.+.. .+|. .+.-..
T Consensus 33 ~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~---r~~ye~ 109 (125)
T PF01794_consen 33 LLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRR---RRNYEI 109 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hCcHHH
Confidence 3458888887776665542222111 11 0 000011233444567888777776665554 2331 222356
Q ss_pred ccchhHHHHHHH
Q 021260 240 WNWYHHWFGRLA 251 (315)
Q Consensus 240 ~~~~H~~~G~~~ 251 (315)
|...|..+..+.
T Consensus 110 f~~~H~~~~~~~ 121 (125)
T PF01794_consen 110 FYYLHILFYIAF 121 (125)
T ss_pred HHHHHHHHHHHH
Confidence 778888754443
No 113
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=36.37 E-value=83 Score=23.36 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccCC
Q 021260 280 LAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNP 313 (315)
Q Consensus 280 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~ 313 (315)
+++++..+++|-..+|...-+.+. .+..++++|
T Consensus 47 A~FV~~lF~iL~~ms~sgspq~~~-~~k~~~~~p 79 (90)
T PF15183_consen 47 AAFVVFLFLILLYMSWSGSPQMRN-SEKHHPMCP 79 (90)
T ss_pred HHHHHHHHHHHHHHhccCCCCcCC-ccccCCCCC
Confidence 344555666666666655444432 255677776
No 114
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=36.29 E-value=4.1e+02 Score=25.76 Aligned_cols=61 Identities=13% Similarity=-0.031 Sum_probs=36.4
Q ss_pred ccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 206 SAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 206 ~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
..|-.+|++++.+.+...+.-+.+..+....++.-. --+.+++++.++..+++.+|-...+
T Consensus 219 a~Hll~al~i~~~l~~~~~~l~~~~~~~~~~~~~~~-~lr~l~~~~~~l~~lqI~lGa~Vag 279 (403)
T PTZ00127 219 AAHLFNAFVIYSLLLWNGLTLILFALPSIAPFPELL-KMRLLARGLFALVFLTAMSGAFVAG 279 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999988887776532222111111111111 1245677777888899999976554
No 115
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=36.17 E-value=1.2e+02 Score=20.86 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhh
Q 021260 143 LGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGI 192 (315)
Q Consensus 143 lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~ 192 (315)
+-.++++++.-.-+..+|+ |-+ ..|+ -..+-.+|+++.++|..+.+
T Consensus 6 ~~~iglMfisv~~i~~sR~-Klk-~~~l--k~i~~~vAy~lli~~gli~~ 51 (58)
T PF10966_consen 6 FGAIGLMFISVILIYFSRY-KLK-GKFL--KFIVSLVAYILLIVSGLIMF 51 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHh-ChHH--HHHHHHHHHHHHHHHHHheE
Confidence 3445566666667777886 221 1233 44566677777776554433
No 116
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=35.94 E-value=44 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhccC-CCChhhhhhHHHH
Q 021260 142 ALGMIGWGIILPVGAIIPRYFKH-KDPLWYYLHAIIQ 177 (315)
Q Consensus 142 ~lm~~aw~~l~p~gil~aR~~k~-~~~~wf~~H~~~~ 177 (315)
.+-.+||.++.|+++.+.+..+. .++.|.++|...=
T Consensus 118 ~~G~ia~~lLl~LaiTS~~~~~rrLg~~Wk~LH~l~Y 154 (205)
T PRK05419 118 TVGMAAFLILLPLALTSTRASQRRLGKRWQKLHRLVY 154 (205)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999988876543 2347999998743
No 117
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=35.65 E-value=3.8e+02 Score=25.27 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhe
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQ 193 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~ 193 (315)
+++.-+.-+..++...-++..+.
T Consensus 124 ~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 124 RLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444443
No 118
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=35.24 E-value=3.4e+02 Score=24.54 Aligned_cols=125 Identities=10% Similarity=-0.044 Sum_probs=62.3
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhccC----CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccch
Q 021260 134 SREKKNHGALGMIGWGIILPVGAIIPRYFKH----KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHR 209 (315)
Q Consensus 134 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~----~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~ 209 (315)
...+.+| +++.++|.+|...|..+. +.. ....+..+|..+..+-.+..+ +..+.....+..+. ..-+.+.
T Consensus 71 ~~~Rl~H-W~~A~~fl~L~lTGl~i~--~p~~~~~~~~~~~~iH~~~G~vf~~~~l-~~~~~~~~~~~~~~--~~~~~~~ 144 (261)
T PRK15006 71 KAVRLWH-WSNALLFVLLLLSGLINH--FALVGATAVKSLVAVHEVCGFLLLACWL-GFVLINAVGGNGHH--YRIRRQG 144 (261)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcchh--ccCcHHH
Confidence 3455667 678888898888887763 221 112345788876644333222 22222111111110 1123333
Q ss_pred hhhHHHHHHHHHHHHhheeccCCC---CCCcccccchhHHHHHHHH-HHHHHHHHHhhhhc
Q 021260 210 GIGIFILVLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLAL-FFASVNIVLGIQIG 266 (315)
Q Consensus 210 ~iG~~~~~l~~~Q~~~g~~r~~~~---~~~r~~~~~~H~~~G~~~~-~l~~~~i~~Gl~~~ 266 (315)
+++-. .-.+..-+.|.++.++. .+....+|+..+..-.+++ +++.+.+.+|+.+.
T Consensus 145 ~~~~~--~~~~~~yl~g~~~g~~~p~~~~~~~k~Npgqkl~y~~v~~~~~~~livTGl~l~ 203 (261)
T PRK15006 145 WLERC--AKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQLAYLGVMYGLVPLLLLTGLLCL 203 (261)
T ss_pred HHHHH--HHHHHHHHHHHhcCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 11111123444432221 1134467888887777653 56668999998864
No 119
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=34.68 E-value=74 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.8
Q ss_pred CcccchhhhHHHHHHHHHHHHhhe
Q 021260 204 NISAHRGIGIFILVLSILQILAFF 227 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~ 227 (315)
..+.|..+|+....+.++-.+.|.
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~ 83 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGL 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999998888877777664
No 120
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=34.21 E-value=2.3e+02 Score=22.19 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhh---eeccCCCCCCcccccchhHHH
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF---FLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g---~~r~~~~~~~r~~~~~~H~~~ 247 (315)
+-|..-.+++++++++.|.+... +..+ .- ..=.+++++.++|.+.= |++-+ .+.+..||..-.++
T Consensus 16 k~yviGFiLSliLT~i~F~lv~~--~~~~-------~~-~~~~~i~~lA~vQi~VqL~~FLHl~--~~~~~~wn~~al~F 83 (109)
T PRK10582 16 KTYMTGFILSIILTVIPFWMVMT--GAAS-------PA-VILGTILAMAVVQILVHLVCFLHMN--TKSDEGWNMTAFVF 83 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--ccCC-------hh-HHHHHHHHHHHHHHHHHHHHHhccc--CCcccchHHHHHHH
Confidence 44666667777777777777542 2221 11 22234445567787643 33333 23345677777666
Q ss_pred HHHH
Q 021260 248 GRLA 251 (315)
Q Consensus 248 G~~~ 251 (315)
+..+
T Consensus 84 t~~i 87 (109)
T PRK10582 84 TVLI 87 (109)
T ss_pred HHHH
Confidence 6653
No 121
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=33.76 E-value=11 Score=36.50 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=55.9
Q ss_pred hhhhhhHHHHHHHHH--HHHhhhhhhhhhccCC--CChhhhhhHHHHHHHHHHHHHHHhhhheecc---ccccCCCCccc
Q 021260 135 REKKNHGALGMIGWG--IILPVGAIIPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGIQLYN---KLNVKNANISA 207 (315)
Q Consensus 135 ~~~~~Hg~lm~~aw~--~l~p~gil~aR~~k~~--~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~---~~~~~~~~~~~ 207 (315)
....+|..++...+. ++-|++ +++|-.|.. .+.|=+.|+...-...++.++-...++.... .+.. -.....
T Consensus 279 ~~~~~h~~~G~~~~~l~~lQ~~~-~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~-~~~~~~ 356 (403)
T KOG4293|consen 279 TVYSAHTDLGIILLVLAFLQPLA-LLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIK-LGYGSI 356 (403)
T ss_pred eeeeecccchhHHHHHHHHHHHH-HHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEE-eeeeeE
Confidence 345566666666655 333333 355544432 2345455665544444444433333333221 1110 124566
Q ss_pred chhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhH
Q 021260 208 HRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH 245 (315)
Q Consensus 208 H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~ 245 (315)
|..+|.+..++-.+|.....-|+++.+..|...++.|+
T Consensus 357 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (403)
T KOG4293|consen 357 LAVLGLIAVILEILSWRITIERPSPSSMSRTSTNAPSR 394 (403)
T ss_pred EEEechhhhhhhhheeeeeecccCcccccccccCcccc
Confidence 77777777777776666665566665555655555554
No 122
>MTH00033 CYTB cytochrome b; Provisional
Probab=33.65 E-value=1.8e+02 Score=28.16 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+.. ...-..+.|.+=.-..++++.+...-|++...-+ | ..=+.
T Consensus 39 ~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~gsY~---r----~~~W~ 111 (383)
T MTH00033 39 GIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYS---R----VLTWI 111 (383)
T ss_pred HHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---C----hHHHH
Confidence 3445678888886543211 0112346777777777777778877776542211 2 12478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+.+.++|..+.....+
T Consensus 112 ~Gv~ll~l~m~~aF~GYvLpw~qms 136 (383)
T MTH00033 112 VGVLIFFIMMLTAFIGYVLPWGQMS 136 (383)
T ss_pred HhHHHHHHHHHHHHhhhcccccchh
Confidence 9999999999999999999876554
No 123
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=33.32 E-value=87 Score=26.90 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
.|++.-+++-..+.++.++.+++++....-.. ....-.++|.+++.+.++|...-.+.|-+
T Consensus 78 ~~~~aaAAmL~~g~~i~~I~filgl~~~cv~~----~~~fyRvi~~~l~laaV~qi~sLvIyPVk 138 (201)
T KOG4671|consen 78 DGGRAAAAMLFIGAAILVICFILGLFALCVPL----KLVFYRVIGGLLFLAAVLQIISLVIYPVK 138 (201)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----eEEeeeHHHHHHHHHHHHHhheeEEeeee
Confidence 35555555555666777778888876543211 34556689999999999998777666654
No 124
>MTH00086 CYTB cytochrome b; Provisional
Probab=32.68 E-value=2.1e+02 Score=27.32 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred HHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHH
Q 021260 182 IFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 182 ~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 247 (315)
+-.+.|+.+++.+..+. ....-....|.+=.-..++++.+...-|++...-+ |+ .=+..
T Consensus 32 iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~---~~----~~W~~ 104 (355)
T MTH00086 32 FQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR---LK----KVWIS 104 (355)
T ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccC---Cc----hHHHH
Confidence 33566888887653221 11113456788888888888888888786542211 11 13789
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCc
Q 021260 248 GRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 248 G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
|.+++++.+++.++|..+.....+
T Consensus 105 Gv~l~~l~m~~af~GYvLpw~qms 128 (355)
T MTH00086 105 GLTIYLLVMMEAFMGYVLVWAQMS 128 (355)
T ss_pred hHHHHHHHHHHHHhhhhcccCchh
Confidence 999999999999999999775544
No 125
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=32.27 E-value=1.2e+02 Score=26.23 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHH--HHHHHHHHHHHHHhh
Q 021260 142 ALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAI--IQLVGFIFGLATVLL 190 (315)
Q Consensus 142 ~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~--~~~~~~~~~~~g~~l 190 (315)
+|++++=++++-.++-+.|+ + ...-++|++ ...+|+.+.++|.++
T Consensus 11 vLLliG~~f~ligaIGLlRf-P---D~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 11 IMILIGGLLSILAAIGVIRL-P---DVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHHHHHHHHHHHHHHHhc-C---cHHHHhhccccchhhhHHHHHHHHHH
Confidence 34444433333333334453 2 356689997 456666666666555
No 126
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=32.04 E-value=5.7e+02 Score=26.16 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=42.2
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhhhhc-cC-CCChhhhhhHHHHHHHHHHHHHHHhhhheec
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIPRYF-KH-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLY 195 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~-k~-~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~ 195 (315)
.+.....|..+..++...+.-...+...++ +. ....|-++=+....++.++..+|+++|-...
T Consensus 113 q~~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~flt~Gi~~G~~WA 177 (576)
T TIGR00353 113 QDPGLIFHPPLLYMGYVGFSVAFAFALASLLRGELDSACARICRPWTLAAWSFLTLGIVLGSWWA 177 (576)
T ss_pred cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999998865544333333333 32 2345766666777889999999999986543
No 127
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=31.94 E-value=2.8e+02 Score=23.41 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHhheeccC
Q 021260 212 GIFILVLSILQILAFFLRPS 231 (315)
Q Consensus 212 G~~~~~l~~~Q~~~g~~r~~ 231 (315)
.....+++++=.+.|++.|.
T Consensus 73 ~~~~y~l~~iPll~g~l~p~ 92 (182)
T PF09323_consen 73 KLWSYFLFLIPLLIGFLFPP 92 (182)
T ss_pred ccHHHHHHHHHHHHHHcCCC
Confidence 33333444444556665544
No 128
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=31.81 E-value=1.6e+02 Score=22.07 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccCC
Q 021260 241 NWYHHWFGRLALFFASVNIVLGIQIGYAG 269 (315)
Q Consensus 241 ~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~ 269 (315)
+.+=+..|+..++.|++....++...-.+
T Consensus 40 ~~l~r~~g~~~~~~~i~~li~~l~~~~~~ 68 (97)
T PF12650_consen 40 KKLCRFMGKFMLIIGIILLIGGLLSFFQS 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 45678999999999999999998544433
No 129
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=30.95 E-value=1.7e+02 Score=25.20 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHHHhhh
Q 021260 136 EKKNHGALGMIGWGIILPVG 155 (315)
Q Consensus 136 ~~~~Hg~lm~~aw~~l~p~g 155 (315)
.+.+|..+..++...+.-.+
T Consensus 71 ~l~iHv~~~~~~ya~~~ia~ 90 (214)
T PF01578_consen 71 WLYIHVPLALLGYAAFAIAA 90 (214)
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 44555555555554444333
No 130
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=30.48 E-value=2.6e+02 Score=28.71 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCC-Ccch
Q 021260 246 WFGRLALFFASVNIVLGIQIGYAG-NEWK 273 (315)
Q Consensus 246 ~~G~~~~~l~~~~i~~Gl~~~~~~-~~~~ 273 (315)
|.|.++++.|.+-.++|+...+.+ .+|.
T Consensus 241 ~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~ 269 (599)
T PF06609_consen 241 WIGIFLFIAGLALFLLGLSWGGYPYYPWK 269 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 799999999999999999998875 4564
No 131
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.47 E-value=2.9e+02 Score=31.21 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 021260 245 HWFGRLALFFA 255 (315)
Q Consensus 245 ~~~G~~~~~l~ 255 (315)
+++|.++++++
T Consensus 115 RliGlLLLLLa 125 (1355)
T PRK10263 115 RIIGVLALILT 125 (1355)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 132
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.39 E-value=55 Score=30.08 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhCCC
Q 021260 276 YGFLLAVVLLAVIVLE-TLSWMKKRSD 301 (315)
Q Consensus 276 y~~~~~~~~~~~~~le-~~~~~~~~~~ 301 (315)
||+.+.+++++.|++- .+-|..||++
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4544434333333333 4568777755
No 133
>PRK10847 hypothetical protein; Provisional
Probab=29.95 E-value=1.8e+02 Score=25.53 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 243 YHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 243 ~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
+-.+.....++-..+-+.+|....+
T Consensus 156 F~~~~~lg~~~W~~~~~~~Gy~~g~ 180 (219)
T PRK10847 156 FAAYNVIGALLWVLLFTYAGYFFGT 180 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444455555655543
No 134
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=29.67 E-value=62 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhC
Q 021260 275 GYGFLLAVVLLAVIVLETLSWMKKR 299 (315)
Q Consensus 275 ~y~~~~~~~~~~~~~le~~~~~~~~ 299 (315)
.|.+++++.+++.++.-...|-.+|
T Consensus 31 m~tILiaIvVliiiiivli~lcssR 55 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSR 55 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555444433333333444444
No 135
>PTZ00370 STEVOR; Provisional
Probab=29.65 E-value=58 Score=29.99 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhCCC
Q 021260 276 YGFLLAVVLLAVIVLE-TLSWMKKRSD 301 (315)
Q Consensus 276 y~~~~~~~~~~~~~le-~~~~~~~~~~ 301 (315)
||+.+.+++++.|++- .+-|..||++
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444433333333333 4568777655
No 136
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.46 E-value=3.5e+02 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=25.1
Q ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260 232 KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 268 (315)
Q Consensus 232 ~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~ 268 (315)
+..+.+..|+-.-...-.+++++++.+++.|+.-..+
T Consensus 245 k~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~en 281 (374)
T KOG1608|consen 245 KYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAEN 281 (374)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3445566666554444456788999999999886654
No 137
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=29.21 E-value=2.5e+02 Score=29.83 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=14.0
Q ss_pred CCCCcccccchhHHHHH
Q 021260 233 DSKFRRFWNWYHHWFGR 249 (315)
Q Consensus 233 ~~~~r~~~~~~H~~~G~ 249 (315)
..++|+.|+++||.+-.
T Consensus 596 tPnWRPRfkyyHW~LSf 612 (1075)
T KOG2082|consen 596 TPNWRPRFKYYHWSLSF 612 (1075)
T ss_pred CCCCCccchhhhhHHHH
Confidence 56789999999997654
No 138
>COG4146 Predicted symporter [General function prediction only]
Probab=28.87 E-value=1.7e+02 Score=28.47 Aligned_cols=66 Identities=18% Similarity=0.433 Sum_probs=34.8
Q ss_pred HHHHHhheeccCCCC-----CC-cccccchhHHHHHHHHHHHHHHHHHhhhhccC-CCcchhhHHHHHHHHHH
Q 021260 220 ILQILAFFLRPSKDS-----KF-RRFWNWYHHWFGRLALFFASVNIVLGIQIGYA-GNEWKIGYGFLLAVVLL 285 (315)
Q Consensus 220 ~~Q~~~g~~r~~~~~-----~~-r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~-~~~~~~~y~~~~~~~~~ 285 (315)
....+.|+++|++.+ +. --.-+|=|.=.--+-++++++.+.+|+...+- +..|.+..+.+.+..++
T Consensus 473 vVMLviGflKpr~t~f~~~~a~~VDltpWk~ak~~sa~ill~migvylGlAe~~Gy~~~~l~~~~~fi~~vVi 545 (571)
T COG4146 473 VVMLVIGFLKPRATPFTFKDAFAVDLTPWKNAKIASAGILLAMIGVYLGLAEFGGYGTRWLAMISYFIAAVVI 545 (571)
T ss_pred HHHHhhhcccCCCCccccCccccccCcccccchhhHHHHHHHHHHHHhhhhhcCCcceeHHHHHHHHHHHhhe
Confidence 344457888776421 11 11112334445556778888889988876542 33455443333333333
No 139
>PRK09546 zntB zinc transporter; Reviewed
Probab=28.75 E-value=1.6e+02 Score=27.42 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccC-CCcchhhHHHHHHHHHHHHHHH
Q 021260 246 WFGRLALFFASVNIVLGIQIGYA-GNEWKIGYGFLLAVVLLAVIVL 290 (315)
Q Consensus 246 ~~G~~~~~l~~~~i~~Gl~~~~~-~~~~~~~y~~~~~~~~~~~~~l 290 (315)
.+..+.+.+.+++.+.|+...+- ...|..+|.+++++.+++.+++
T Consensus 269 ilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~ 314 (324)
T PRK09546 269 LMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGV 314 (324)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHH
Confidence 34444556677777788876643 3456666665555555554443
No 140
>PLN02292 ferric-chelate reductase
Probab=28.66 E-value=1.3e+02 Score=31.48 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCcccchhhhHHHHHHHHHHHHhhee---ccCCCCCCccccc-chhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 203 ANISAHRGIGIFILVLSILQILAFFL---RPSKDSKFRRFWN-WYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 203 ~~~~~H~~iG~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~-~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
++...|.|+|-+++++.++-.+.-.. +.+.-.+...+++ ..-.+.|.++++++.+-+.+.+...
T Consensus 204 ~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~i 271 (702)
T PLN02292 204 SSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKI 271 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56778888888888888887765432 2111111111110 1122567766666666555554443
No 141
>KOG4663 consensus Cytochrome b [Energy production and conversion]
Probab=28.66 E-value=2.3e+02 Score=24.71 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=44.1
Q ss_pred CcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260 204 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 267 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~ 267 (315)
...+|+.=.-.-++.+.+...-|++.-.-++++|..|+ .|.++++|-+++.++|..+..
T Consensus 78 lR~~HanGAS~ffi~m~LHi~rglyygsy~~pr~~~Wn-----~Gvii~lLt~~tAflGYvl~w 136 (210)
T KOG4663|consen 78 LRYLHANGASFFFIVMYLHIFRGLYYGSYRSPRETVWN-----KGVIILLLTIVTAFLGYVLPW 136 (210)
T ss_pred EeehhhcCCcHHHHHHHHHHhhhheEeeecccchhhhh-----hhHHHHHHHHHHhHhcccCch
Confidence 45667765556666777788778765554566777777 899999999999999988653
No 142
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=28.54 E-value=64 Score=26.79 Aligned_cols=49 Identities=18% Similarity=-0.029 Sum_probs=30.7
Q ss_pred hhhhHHHHH--HHHHHHHhhe--eccC--CCCCCcccccchhHHHHHHHHHHHHH
Q 021260 209 RGIGIFILV--LSILQILAFF--LRPS--KDSKFRRFWNWYHHWFGRLALFFASV 257 (315)
Q Consensus 209 ~~iG~~~~~--l~~~Q~~~g~--~r~~--~~~~~r~~~~~~H~~~G~~~~~l~~~ 257 (315)
-++|+++.+ +.++||.+|+ .-.+ +..+.|-.--..|..+|..+++.+.+
T Consensus 95 li~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~~ 149 (150)
T PF11158_consen 95 LIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSALA 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356766654 5678999885 3221 12223433346799999999987753
No 143
>MTH00131 CYTB cytochrome b; Provisional
Probab=28.41 E-value=2.2e+02 Score=27.42 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+. ....-..+.|.+=.-..++++.+...-+++...-+ |+ -=++
T Consensus 42 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~ev~~G~~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~----~~W~ 114 (380)
T MTH00131 42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYL---YK----ETWN 114 (380)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Cc----hHHH
Confidence 334667888888654321 11123456788777777777888887776542111 11 1378
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+.....+
T Consensus 115 ~G~~l~~l~~~~~f~Gy~Lpw~q~s 139 (380)
T MTH00131 115 IGVVLLLLVMMTAFVGYVLPWGQMS 139 (380)
T ss_pred HhHHHHHHHHHHHHHhccCccccch
Confidence 9999999999999999999876554
No 144
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=28.33 E-value=56 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhh
Q 021260 140 HGALGMIGWGIILPVGAIIPRY 161 (315)
Q Consensus 140 Hg~lm~~aw~~l~p~gil~aR~ 161 (315)
-..+|+++|+++.|+|..+.-|
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999876644
No 145
>PF14007 YtpI: YtpI-like protein
Probab=28.32 E-value=1.9e+02 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021260 246 WFGRLALFFASVNIVLGIQ 264 (315)
Q Consensus 246 ~~G~~~~~l~~~~i~~Gl~ 264 (315)
..|.+.+++|..|++.|+.
T Consensus 61 iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 61 IVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3455555555555555544
No 146
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=27.87 E-value=3.8e+02 Score=26.75 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=38.6
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhh---hhhhccCC--CChhhhhhHHHHHHHHHHHHHHHhhhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAI---IPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGI 192 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil---~aR~~k~~--~~~wf~~H~~~~~~~~~~~~~g~~l~~ 192 (315)
..+.+.+|+..|+.+|....-.|.. +.|..+.. .+.+-.+...+..++.++.++++..+.
T Consensus 86 f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~l~~~~l~~~~~w~~~~g~~l~~~~~~~G~ 150 (493)
T cd01661 86 FGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRARLAGGNLAWFVFWGYNLFIVLAATGYLLGI 150 (493)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 5678999999999999877655543 33555432 233334455555566666777776654
No 147
>MTH00145 CYTB cytochrome b; Provisional
Probab=27.85 E-value=2.7e+02 Score=26.83 Aligned_cols=84 Identities=15% Similarity=0.051 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+.. ...-....|.+=.-..++++.+...-|++...-+ |+ .=++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~---~~----~~W~ 115 (379)
T MTH00145 43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYL---MQ----HTWN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---Cc----hHHH
Confidence 3345668888876532211 0112346788866677777777777776542211 22 2378
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+.+.++|..+.....+
T Consensus 116 ~Gv~l~~l~~~~af~GYvLpw~q~s 140 (379)
T MTH00145 116 IGVTLLLLSMGTAFLGYVLPWGQMS 140 (379)
T ss_pred HhHHHHHHHHHHHHHhhccCccccc
Confidence 9999999999999999999876554
No 148
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=27.60 E-value=1.2e+02 Score=28.38 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhccC-CCcchhhHHHHHHHHHHHHHHHH
Q 021260 249 RLALFFASVNIVLGIQIGYA-GNEWKIGYGFLLAVVLLAVIVLE 291 (315)
Q Consensus 249 ~~~~~l~~~~i~~Gl~~~~~-~~~~~~~y~~~~~~~~~~~~~le 291 (315)
.+.+.+.+++.+.|+....- ...|..+|.+++++++++.+++-
T Consensus 270 ~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~ 313 (322)
T COG0598 270 TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLY 313 (322)
T ss_pred HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHH
Confidence 33334445555556666553 34566677777766666666653
No 149
>COG5395 Predicted membrane protein [Function unknown]
Probab=27.50 E-value=2.4e+02 Score=22.16 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=29.3
Q ss_pred cccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHH
Q 021260 205 ISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLAL 252 (315)
Q Consensus 205 ~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~ 252 (315)
...|..+|-+=++++..-.+.+++.+..+ .-.-+.++|...+..++
T Consensus 37 t~lHr~LGrvWv~lM~atavSs~FI~ei~--l~g~FSpIHLLSi~~i~ 82 (131)
T COG5395 37 TTLHRLLGRVWVALMGATAVSSLFIHEIN--LHGGFSPIHLLSIFTII 82 (131)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhheeeeee--eccCcChHHHHHHHHHH
Confidence 36788888888888887777776543321 12335567877666554
No 150
>MTH00100 CYTB cytochrome b; Provisional
Probab=27.25 E-value=2.5e+02 Score=26.98 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+. .......+.|.+=.-..++++.+...-+++...-+. .| =+.
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~~-~~------~W~ 114 (379)
T MTH00100 42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF-LE------TWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-ch------HHH
Confidence 444667888888654321 111234577887777777777778777765422111 11 278
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+.....+
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~s 139 (379)
T MTH00100 115 IGIILLFTVMATAFMGYVLPWGQMS 139 (379)
T ss_pred HHHHHHHHHHHHHHHHhccChhhhh
Confidence 9999999999999999999865444
No 151
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=27.17 E-value=4e+02 Score=22.82 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=54.8
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhccCC--CChhhhhhHHHHHHHHHHHHHHHhhhheeccc--cccCCCCcccch
Q 021260 134 SREKKNHGALGMIGWGIILPVGAIIPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNK--LNVKNANISAHR 209 (315)
Q Consensus 134 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~--~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~--~~~~~~~~~~H~ 209 (315)
...+..| ++|.+++...+-.|.+..+.-|.. ....+.+|..+.+..+++++.=+..-+..... .++.+.....=+
T Consensus 10 ~~~i~lH-Wl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~~~aA 88 (181)
T COG3038 10 LVQIALH-WLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAA 88 (181)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHH
Confidence 3445666 788888888887887777665543 22457999999988777766655554443332 111111111111
Q ss_pred hhh-HHHHHHHHHHHHhheec
Q 021260 210 GIG-IFILVLSILQILAFFLR 229 (315)
Q Consensus 210 ~iG-~~~~~l~~~Q~~~g~~r 229 (315)
.+| +.+.++++.-|+.|++.
T Consensus 89 ~~~Hl~LY~l~lalPlsG~l~ 109 (181)
T COG3038 89 KLGHLALYLLMLALPLSGYLL 109 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 122 33345666678888654
No 152
>MTH00046 CYTB cytochrome b; Validated
Probab=27.14 E-value=2.2e+02 Score=27.14 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=56.4
Q ss_pred HHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHH
Q 021260 182 IFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 182 ~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 247 (315)
+-.+.|+.+++.+..+. +...-....|++=.-..++++.++..-|++...-+ |+ .=++.
T Consensus 34 iQiiTGi~La~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gAs~~f~~~ylHi~R~~~~gsY~---~~----~~W~~ 106 (355)
T MTH00046 34 IQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYS---KK----GVWNV 106 (355)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc----hhHHH
Confidence 34566888887554321 11113456798888888888888888886542211 11 13789
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCc
Q 021260 248 GRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 248 G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
|.+++++.+++.++|..+.....+
T Consensus 107 Gv~l~~l~m~~aF~GYvLpwgqms 130 (355)
T MTH00046 107 GFILYLLVMVEAFLGYILPWHQMS 130 (355)
T ss_pred hHHHHHHHHHHHHeeeecCccchh
Confidence 999999999999999998776554
No 153
>MTH00016 CYTB cytochrome b; Validated
Probab=26.81 E-value=2.6e+02 Score=26.97 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+.. ...-..+.|.+=.-..++++.+...-|++...-+ |+ --+.
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~---~~----~~W~ 115 (378)
T MTH00016 43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYF---LM----ETWN 115 (378)
T ss_pred HHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc----hHHH
Confidence 3445678888876543211 1123456788777777777888888786542211 11 1478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+++.++|..+.....+
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~q~s 140 (378)
T MTH00016 116 IGVILLLLTMATAFLGYVLPWGQMS 140 (378)
T ss_pred hhHHHHHHHHHHHHhhhccchhhhh
Confidence 9999999999999999999765443
No 154
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=26.64 E-value=5.4e+02 Score=24.12 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=31.5
Q ss_pred cccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 021260 205 ISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNI 259 (315)
Q Consensus 205 ~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i 259 (315)
-++-+.++-+.++..+.+.-.-++.-+.++..|...+...+..+....++..+..
T Consensus 156 l~pf~ll~Gl~~v~~~~~~GA~~l~~kt~g~l~~rar~~a~~~~~~~~~~~~~~~ 210 (328)
T PF02322_consen 156 LSPFSLLGGLAVVALFALHGAVFLALKTEGELRERARRWALRLGLAALVLFLAFA 210 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777766666666666555554444334444444556666666655554444
No 155
>PRK15049 L-asparagine permease; Provisional
Probab=26.55 E-value=6.1e+02 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.073 Sum_probs=9.1
Q ss_pred cccccchhHHHHHHHHHHH
Q 021260 237 RRFWNWYHHWFGRLALFFA 255 (315)
Q Consensus 237 r~~~~~~H~~~G~~~~~l~ 255 (315)
|++..+...+..++.++..
T Consensus 415 ~pf~~~~~p~~~~~~l~~~ 433 (499)
T PRK15049 415 VSFKLPGAPFTSWLTLLFL 433 (499)
T ss_pred CCCcccCccHHHHHHHHHH
Confidence 3444444555555554443
No 156
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=26.33 E-value=6.6e+02 Score=25.04 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=37.0
Q ss_pred cchhhhhhHHHHHHHHHHH-Hhhhh---hhhhhccCC---CChhhhhhHHHHHHHHHHHHHHHhh
Q 021260 133 SSREKKNHGALGMIGWGII-LPVGA---IIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLL 190 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l-~p~gi---l~aR~~k~~---~~~wf~~H~~~~~~~~~~~~~g~~l 190 (315)
..+.+..||..|...|..- +..|. ++.|..+.+ .|.+-.++..+..++.++.++++..
T Consensus 45 y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 45 YNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999888763 22222 234555422 2333456777777777777777655
No 157
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=26.18 E-value=3.7e+02 Score=22.12 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhhee
Q 021260 175 IIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL 228 (315)
Q Consensus 175 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~ 228 (315)
.......+++++|+.+-.-...... ..-+.-...|-+++....+|.+=|.+
T Consensus 50 LFHa~~~~~~~~Gl~lL~r~~~r~~---~~~~~~~~~g~~l~G~G~Fnl~dG~v 100 (143)
T PF10002_consen 50 LFHAFTWVATVAGLFLLWRADRRRR---RPWSGRRLWGGVLLGWGLFNLVDGVV 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc---cCccchhhHHHHHHHhhHHHHHHHHH
Confidence 3444556677777776552211111 23466678888888888888877754
No 158
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=26.13 E-value=3.5e+02 Score=21.85 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=51.6
Q ss_pred cchhhhhhHHHHHHHHHHHHhh-hhhhhhhccC-----CCC--------hhhhhhHHHHHHHHHHHHHHHhhhheecccc
Q 021260 133 SSREKKNHGALGMIGWGIILPV-GAIIPRYFKH-----KDP--------LWYYLHAIIQLVGFIFGLATVLLGIQLYNKL 198 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~-gil~aR~~k~-----~~~--------~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~ 198 (315)
+++-...|--+|..|+.+..-. .....|..-. .++ .+.-.|..+-++++.+.+..+..++..
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~---- 102 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG---- 102 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 4567789999999998765432 1222222111 011 234567666666666666666555532
Q ss_pred ccCCCCcccchhhhHHHHHHHHHHHHhhe
Q 021260 199 NVKNANISAHRGIGIFILVLSILQILAFF 227 (315)
Q Consensus 199 ~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~ 227 (315)
..+.|..+|-.++.+.+.-.+.|+
T Consensus 103 -----~~~~Hrki~r~t~piWlyvsvTGv 126 (133)
T PF04238_consen 103 -----RFTRHRKIGRWTFPIWLYVSVTGV 126 (133)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 236688888888877776666663
No 159
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=26.08 E-value=7.2e+02 Score=25.42 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=41.2
Q ss_pred cchhhhhhHHHHHHHHH-HHHhhhhhhhhhccC-CCChhhhhhHHHHHHHHHHHHHHHhhhhee
Q 021260 133 SSREKKNHGALGMIGWG-IILPVGAIIPRYFKH-KDPLWYYLHAIIQLVGFIFGLATVLLGIQL 194 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~-~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~ 194 (315)
.+.....|+.+..++.. +.+|.+.-++-..+. ....|-++=+-+..++.++..+|+++|-..
T Consensus 167 q~~wl~iHpp~l~lgYa~~~v~fa~a~~~Ll~~~~~~~~~~~~~~~~~~gw~fLT~GI~lG~~W 230 (571)
T PRK10369 167 QHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAACARICWRWALPGWSALTAGIILGSWW 230 (571)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999998 445655544433332 223454444556677889999999998653
No 160
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=25.96 E-value=4.4e+02 Score=22.85 Aligned_cols=94 Identities=16% Similarity=0.312 Sum_probs=52.3
Q ss_pred chhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC--Ccch--hhHHHH--HH
Q 021260 208 HRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWK--IGYGFL--LA 281 (315)
Q Consensus 208 H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~--~~~~--~~y~~~--~~ 281 (315)
.+.+-+++.+..+.|.+--+++.. ....++-+|..+-+...=.+.+|..+.... ..+. +.+++- ++
T Consensus 72 lr~~~fIlvIA~~V~~ve~~l~~~--------~p~Ly~~LGiflpLI~tNCaVLG~al~~~~~~~~~~~s~~~glg~GlG 143 (193)
T PRK05151 72 LRTLAFILVIAVVVQFTEMVVRKT--------SPTLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFGAAVG 143 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 566777777777888876665421 122456677766655555555677665532 2222 344443 33
Q ss_pred HHHHHHHHHHHHHHhhhC-CCCCCCCCCcccCCC
Q 021260 282 VVLLAVIVLETLSWMKKR-SDKTTAPPTFQMNPV 314 (315)
Q Consensus 282 ~~~~~~~~le~~~~~~~~-~~~~~~~~~~~~~~~ 314 (315)
+.+++.+. .-.|+| +.++ -|+.||.-|.
T Consensus 144 f~lal~ll----a~iRErl~~~~-vP~~~~G~pI 172 (193)
T PRK05151 144 FSLVLVLF----AAIRERLAVAD-VPAPFRGAAI 172 (193)
T ss_pred HHHHHHHH----HHHHHHHcCCC-CCcccCCccH
Confidence 33333333 333334 4454 4999998884
No 161
>MTH00156 CYTB cytochrome b; Provisional
Probab=25.93 E-value=2.7e+02 Score=26.57 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++..+.|+.+++.+..+. ....-..+.|.+=.-..++++.+...-+++...-+ |+ .-++
T Consensus 32 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~----~~W~ 104 (356)
T MTH00156 32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYK---LK----HTWM 104 (356)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc----chhH
Confidence 444667888888654321 11123456788766667777777777776542211 11 1478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+.....+
T Consensus 105 ~G~~l~~~~~~~af~GY~Lpw~q~s 129 (356)
T MTH00156 105 SGVIILFLVMATAFLGYVLPWGQMS 129 (356)
T ss_pred hhHHHHHHHHHHHHeeeeccccchh
Confidence 9999999999999999999876554
No 162
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=25.52 E-value=4.4e+02 Score=22.76 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=52.0
Q ss_pred chhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC--CCcch--hhHHHH--HH
Q 021260 208 HRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA--GNEWK--IGYGFL--LA 281 (315)
Q Consensus 208 H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~--~~~~~--~~y~~~--~~ 281 (315)
.+.+-+++.+..+.|.+--+++... ...++-+|..+-+...=.+.+|..+... ...+. ..+++- ++
T Consensus 71 lr~~~filvIA~~V~~ve~~l~~~~--------p~ly~~LGiflpLI~tNCaVLG~a~~~~~~~~~~~~s~~~glg~GlG 142 (190)
T TIGR01943 71 LRTIVFILVIAALVQFVEMVVRKTS--------PDLYRALGIFLPLITTNCAVLGVALLNIQLDYNLLQSIVYAVGAGLG 142 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--------hHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4566677777777888766554211 1245567776666555555567666542 22332 344443 34
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCCCcccCCC
Q 021260 282 VVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPV 314 (315)
Q Consensus 282 ~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 314 (315)
+.+++.++.+ -|+|-+.++ -|+.||..|.
T Consensus 143 f~lal~l~a~---iRE~l~~~~-vP~~~~G~pI 171 (190)
T TIGR01943 143 FTLAMVIFAG---IRERLDLSD-VPKAFRGSPI 171 (190)
T ss_pred HHHHHHHHHH---HHHHHccCC-CCccccCcCH
Confidence 4444433332 333334454 4999999884
No 163
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=25.41 E-value=1.4e+02 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHhhhheecccccc
Q 021260 173 HAIIQLVGFIFGLATVLLGIQLYNKLNV 200 (315)
Q Consensus 173 H~~~~~~~~~~~~~g~~l~~~~~~~~~~ 200 (315)
...+.++++++.++|+++-|........
T Consensus 65 qItl~VlGiiLviagl~l~fil~~~lg~ 92 (150)
T PF05745_consen 65 QITLVVLGIILVIAGLALTFILHSQLGN 92 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHhhehhhhcC
Confidence 4466778999999999999988776543
No 164
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=25.17 E-value=3.4e+02 Score=21.33 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhh---eeccCCCCCCcccccchhHH
Q 021260 170 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF---FLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 170 f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g---~~r~~~~~~~r~~~~~~H~~ 246 (315)
.+-|..-.+++++++++.|.+.. .+.. +.+..+ .+++.+.+.|.+.= |++-+.+ .-..|+..+.+
T Consensus 17 ~k~y~iGFvLsIiLT~ipF~~vm--~~~~-------~~~~~~-~~i~~lA~iQi~vqLvyFlHM~~~--~eg~w~~~~~i 84 (111)
T COG3125 17 LKSYLIGFVLSIILTLIPFWVVM--TGAL-------SSTVTL-IIILGLAVIQILVHLVYFLHMNTK--SEGRWNMGALI 84 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccc-------chhhHH-HHHHHHHHHHHHHHHHHHhcccCC--cccceehHHHH
Confidence 45566666777777777776644 2222 222233 44566777887643 3333322 23457878888
Q ss_pred HHHHHHHHHHHH
Q 021260 247 FGRLALFFASVN 258 (315)
Q Consensus 247 ~G~~~~~l~~~~ 258 (315)
++.++.++-++.
T Consensus 85 Ft~~i~vivvvG 96 (111)
T COG3125 85 FTIFIIVIVVVG 96 (111)
T ss_pred HHHHHHHHHHHH
Confidence 877766655443
No 165
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.09 E-value=1.1e+02 Score=19.88 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Q 021260 277 GFLLAVVLLAVIVLETLSWMKKR 299 (315)
Q Consensus 277 ~~~~~~~~~~~~~le~~~~~~~~ 299 (315)
++.+.+++++++..-+..++.+|
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 33344444444443344554444
No 166
>PHA03049 IMV membrane protein; Provisional
Probab=24.82 E-value=1.5e+02 Score=21.03 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHH-HhhhCCCCCCC--CCCc-ccCC
Q 021260 283 VLLAVIVLETLS-WMKKRSDKTTA--PPTF-QMNP 313 (315)
Q Consensus 283 ~~~~~~~le~~~-~~~~~~~~~~~--~~~~-~~~~ 313 (315)
++++.+++-++. +++++...++. +|.| .||+
T Consensus 10 ICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMED 44 (68)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCChhhccCchh
Confidence 344444444444 44555444442 2455 4444
No 167
>MTH00034 CYTB cytochrome b; Validated
Probab=24.55 E-value=2.9e+02 Score=26.58 Aligned_cols=84 Identities=8% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+.. ...-..+.|.+=.-..++++.+...-+++...-+ |+ .=++
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~---~~----~~W~ 114 (379)
T MTH00034 42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYV---NI----ETWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---Cc----hHHH
Confidence 3446678988876543211 1113356788777777777778887776542211 11 1267
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+.....+
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~s 139 (379)
T MTH00034 115 IGVILFLLTMLTAFVGYVLPWGQMS 139 (379)
T ss_pred HhHHHHHHHHHHHHhhcCcchhhhh
Confidence 9999999999999999999775544
No 168
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=24.17 E-value=2.3e+02 Score=26.00 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhhccCC-CcchhhHHHHHHHHHHHHHHH
Q 021260 250 LALFFASVNIVLGIQIGYAG-NEWKIGYGFLLAVVLLAVIVL 290 (315)
Q Consensus 250 ~~~~l~~~~i~~Gl~~~~~~-~~~~~~y~~~~~~~~~~~~~l 290 (315)
+.+.+.+++.+.|+...+-| ..|..+|.+++++++++.+++
T Consensus 267 IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~ 308 (318)
T TIGR00383 267 IFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGP 308 (318)
T ss_pred HHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHH
Confidence 34445555556666654332 356667766666665555543
No 169
>TIGR00930 2a30 K-Cl cotransporter.
Probab=24.11 E-value=3.8e+02 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.524 Sum_probs=17.8
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHH
Q 021260 234 SKFRRFWNWYHHWFGRLALFFASVNIV 260 (315)
Q Consensus 234 ~~~r~~~~~~H~~~G~~~~~l~~~~i~ 260 (315)
...|+.++++|.|+..+..++..+-++
T Consensus 489 p~~RP~fk~~~~~~sllG~l~c~~lmf 515 (953)
T TIGR00930 489 PGWRPRFKYYHWWLSLLGASLCCAIMF 515 (953)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHH
Confidence 346888888898877666555544433
No 170
>MTH00191 CYTB cytochrome b; Provisional
Probab=24.06 E-value=3.2e+02 Score=26.15 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhee-----ccCC------------CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc--CCCc
Q 021260 211 IGIFILVLSILQILAFFL-----RPSK------------DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY--AGNE 271 (315)
Q Consensus 211 iG~~~~~l~~~Q~~~g~~-----r~~~------------~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~--~~~~ 271 (315)
+|-++...+.+|.+.|++ .|.. +-+.-...+.+|.+..-..+++..+=++-|+.... .++.
T Consensus 30 ~G~l~~~~~~~q~itG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~~~gsy~~~~~ 109 (365)
T MTH00191 30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccchh
Q ss_pred chhhHHHHHHHHHHHHHH
Q 021260 272 WKIGYGFLLAVVLLAVIV 289 (315)
Q Consensus 272 ~~~~y~~~~~~~~~~~~~ 289 (315)
|.++..+.+..+...+..
T Consensus 110 W~~G~~l~~l~~~~~f~G 127 (365)
T MTH00191 110 WNVGVILLILSMATAFLG 127 (365)
T ss_pred hHhhHHHHHHHHHHHHhh
No 171
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=23.98 E-value=3.3e+02 Score=20.75 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhh---eeccCCCCCCcccccchhHHH
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF---FLRPSKDSKFRRFWNWYHHWF 247 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g---~~r~~~~~~~r~~~~~~H~~~ 247 (315)
+-|..-.+++++++++.|.+... +..+ .. ..=.+++++.+.|.+.= |++-+ .+..+.||..-..+
T Consensus 5 k~yviGFiLsliLT~i~F~~v~~--~~~~-------~~-~~~~~i~~~A~iQi~vqL~~FlHl~--~~~~~~~n~~~l~F 72 (96)
T TIGR02847 5 KSYLIGFVLSVILTAIPFGLVMS--GTLS-------KG-LTLVIIIVLAVVQILVHLVFFLHLN--TSSEQRWNLISLLF 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--ccCC-------Hh-HHHHHHHHHHHHHHHHHHHHHhhcc--CccccchHHHHHHH
Confidence 34566667778888877777543 2111 11 22334445677887653 33333 23345677777666
Q ss_pred HHHHHH
Q 021260 248 GRLALF 253 (315)
Q Consensus 248 G~~~~~ 253 (315)
+.++.+
T Consensus 73 t~~i~~ 78 (96)
T TIGR02847 73 TILIIF 78 (96)
T ss_pred HHHHHH
Confidence 654443
No 172
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.95 E-value=2.3e+02 Score=23.44 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHH--HHHHHHHHHHHHHhhhh
Q 021260 141 GALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAI--IQLVGFIFGLATVLLGI 192 (315)
Q Consensus 141 g~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~--~~~~~~~~~~~g~~l~~ 192 (315)
.+++.++=.+++-.++-+.|+ + ...-++|+. .+.+|+.+.++|..+-+
T Consensus 13 ~ill~lG~~f~ligaIGllRf-P---D~ytRlHAatKa~TlG~~liLlg~~l~~ 62 (145)
T PRK12586 13 AIMILLGSIIALISAIGIVKF-Q---DVFLRSHAATKSSTLSVLLTLIGVLIYF 62 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-C---cHHHHccccccchhhHHHHHHHHHHHHH
Confidence 344444444444344444453 2 345689986 56677777777777644
No 173
>MTH00022 CYTB cytochrome b; Validated
Probab=23.65 E-value=3.1e+02 Score=26.42 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+. ....-....|.+=--..++++.+...-|++...-+. .| =+.
T Consensus 41 ~~qiiTG~~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lHi~r~~~~gsy~~-~~------~W~ 113 (379)
T MTH00022 41 VIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLK-FH------VWN 113 (379)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-cc------hhh
Confidence 334567888887654321 111234578988445555566667766765421111 11 267
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+++.++|..+.....+
T Consensus 114 ~Gv~l~~l~~~~af~GyvLpw~q~s 138 (379)
T MTH00022 114 VGVVIFLLTMATAFMGYVLPWGQMS 138 (379)
T ss_pred hcHHHHHHHHHHHHheeeecccccc
Confidence 9999999999999999998766544
No 174
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=23.55 E-value=24 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=27.4
Q ss_pred EEEEEecCCCCEEEEEeCCCC---CCCCCcEEEEEEcCC
Q 021260 2 TIILSAIYTTGWVGMGFSKDG---MMAGSSAMVGWFNKK 37 (315)
Q Consensus 2 ~f~ls~~~~~gWvAiGfs~~~---~M~gsd~~i~~~~~~ 37 (315)
..++|.++..||+.+|.|.+- .+..++.+|+..|++
T Consensus 129 ii~vSp~De~Gy~slG~s~~~~~~~ie~A~~vI~eVN~~ 167 (198)
T PF02550_consen 129 IIQVSPMDEHGYFSLGTSVDYTKAAIEQAKKVIVEVNPN 167 (198)
T ss_dssp EEEECEE-TTSEEECTTBHBTHHHHHHHTSEEEEEEETT
T ss_pred EEEecCcCCCCCEeecHHHHhHHHHHhcCCeEEEEcCCC
Confidence 357888899999999988654 366788899988753
No 175
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=23.36 E-value=7.4e+02 Score=24.58 Aligned_cols=22 Identities=0% Similarity=-0.372 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 021260 243 YHHWFGRLALFFASVNIVLGIQ 264 (315)
Q Consensus 243 ~H~~~G~~~~~l~~~~i~~Gl~ 264 (315)
...+.+..+-+++.+-+...+.
T Consensus 400 g~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 400 GGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred CCccchhhHHHHHHHHHHHHHh
Confidence 4444444555555554444443
No 176
>COG5395 Predicted membrane protein [Function unknown]
Probab=22.93 E-value=2.8e+02 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 243 YHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 243 ~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+|+.+|++-+++-..+...++-+-
T Consensus 39 lHr~LGrvWv~lM~atavSs~FI~ 62 (131)
T COG5395 39 LHRLLGRVWVALMGATAVSSLFIH 62 (131)
T ss_pred HHHHHHHHHHHHHHHHhhhhheee
Confidence 566667666666666666665543
No 177
>MTH00100 CYTB cytochrome b; Provisional
Probab=22.92 E-value=3.4e+02 Score=26.15 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhHHHHHHHHHHHHHHHhhhheeccccc
Q 021260 137 KKNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLN 199 (315)
Q Consensus 137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~ 199 (315)
...=|.+..+++.+..-.|++.+-++.+. .-.| ..+|...-..-+++..+=+.=++.. +..+
T Consensus 30 ~~~~G~ll~~~~~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~-gsy~ 108 (379)
T MTH00100 30 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYY-GSYL 108 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 34448888889998888999888766542 1234 3556532221111111111111111 1111
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 200 VKNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 200 ~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
. .. ==++|++++.+.......|++.|.-
T Consensus 109 ~---~~--~W~~G~~l~~l~~~~af~Gy~Lpw~ 136 (379)
T MTH00100 109 F---LE--TWNIGIILLFTVMATAFMGYVLPWG 136 (379)
T ss_pred C---ch--HHHHHHHHHHHHHHHHHHHhccChh
Confidence 1 11 2578999999999999999988765
No 178
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=22.65 E-value=2e+02 Score=23.11 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=13.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 021260 268 AGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSD 301 (315)
Q Consensus 268 ~~~~~~~~y~~~~~~~~~~~~~le~~~~~~~~~~ 301 (315)
++..|-...-++.++++++-+++=.+.-+.+|+.
T Consensus 31 D~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 31 DATPWNYSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 3445643322233333333333333444444433
No 179
>COG4329 Predicted membrane protein [Function unknown]
Probab=22.36 E-value=1.2e+02 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=12.1
Q ss_pred CcccchhhhHHHHHHHHHHHHhh
Q 021260 204 NISAHRGIGIFILVLSILQILAF 226 (315)
Q Consensus 204 ~~~~H~~iG~~~~~l~~~Q~~~g 226 (315)
.-+.|-+-|-..+....+|..-|
T Consensus 89 ~wSa~~~~G~ll~GaGlFnl~eG 111 (160)
T COG4329 89 QWSAKYWWGGLLLGAGLFNLYEG 111 (160)
T ss_pred eeehhhhhhhhhhcccchheeeh
Confidence 34555555555555555555444
No 180
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.17 E-value=3.8e+02 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhc
Q 021260 244 HHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 244 H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
=..++.+++++|.+-+.+|+.+.
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888889988888886654
No 181
>MTH00224 CYTB cytochrome b; Provisional
Probab=21.98 E-value=2.6e+02 Score=26.94 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhheecccc--------------ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKL--------------NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~--------------~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+. ....-..+.|.+=.-..++++.+...-+++...-+. .| =++
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~ev~~Gw~iR~~H~~gas~~f~~~~lH~~R~~~~gsy~~-~~------~W~ 115 (379)
T MTH00224 43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNL-SE------TWN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HH------HHH
Confidence 344667888887553321 111234578998888888888888887765422111 11 267
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+...++|..+.....+
T Consensus 116 ~Gv~l~~l~~~~af~GY~Lpw~q~s 140 (379)
T MTH00224 116 IGVILFILTMATAFLGYVLPWGQMS 140 (379)
T ss_pred HhHHHHHHHHHHHHeEeeeccccch
Confidence 9999999999999999999876554
No 182
>MTH00053 CYTB cytochrome b; Provisional
Probab=21.77 E-value=4.2e+02 Score=25.58 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+.. ...-..+.|.+=.-..++++.+...-|++...-+ | ..=+.
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~---~----~~~W~ 115 (381)
T MTH00053 43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYT---K----IIVWN 115 (381)
T ss_pred HHHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---C----chHHH
Confidence 3445678888876543211 1113456788777777777777777776542211 1 12478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+++.++|..+.....+
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~qms 140 (381)
T MTH00053 116 VGVLIFLLMILTAFIGYVLPWGQMS 140 (381)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhh
Confidence 9999999999999999998765444
No 183
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.33 E-value=1.4e+02 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCcc
Q 021260 281 AVVLLAVIVLETLSWMKKRSDKTTAPPTFQ 310 (315)
Q Consensus 281 ~~~~~~~~~le~~~~~~~~~~~~~~~~~~~ 310 (315)
+.++++.+++- +.|-.+|+++++ |.|+
T Consensus 41 ~~iFil~Vilw-fvCC~kRkrsRr--PIYr 67 (94)
T PF05393_consen 41 CGIFILLVILW-FVCCKKRKRSRR--PIYR 67 (94)
T ss_pred HHHHHHHHHHH-HHHHHHhhhccC--Cccc
Confidence 33344444443 344444444333 4443
No 184
>MTH00074 CYTB cytochrome b; Provisional
Probab=21.27 E-value=3.3e+02 Score=26.25 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhheeccc--------------cccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNK--------------LNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~--------------~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+ .....-....|.+=--..++++.+...-|++...-+ +++ =++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~--~~~-----~W~ 115 (380)
T MTH00074 43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYM--YKE-----TWN 115 (380)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch-----HHH
Confidence 34466788888755421 111123457888877777777778887776542111 111 367
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 021260 247 FGRLALFFASVNIVLGIQIGYAGNE 271 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~~~ 271 (315)
.|.+++++.+++.++|..+.....+
T Consensus 116 ~G~~l~~l~~~~af~Gy~Lpw~q~s 140 (380)
T MTH00074 116 IGVILLFLVMATAFVGYVLPWGQMS 140 (380)
T ss_pred hhHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999876554
No 185
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=21.03 E-value=44 Score=25.68 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=6.0
Q ss_pred hhhCCCCCCCCCCc
Q 021260 296 MKKRSDKTTAPPTF 309 (315)
Q Consensus 296 ~~~~~~~~~~~~~~ 309 (315)
|+||+...+ .|+|
T Consensus 88 Rer~~~~~~-~p~~ 100 (101)
T PF06024_consen 88 RERQKSIRN-QPSF 100 (101)
T ss_pred ecccccccC-CCCc
Confidence 444444444 4444
No 186
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.84 E-value=1e+03 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHH
Q 021260 175 IIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSI 220 (315)
Q Consensus 175 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~ 220 (315)
.+-++++.++++|.++++...+. .-+.-+.+|+++++.++
T Consensus 906 lii~~~iPl~~~g~~~~l~~~g~------~l~~~s~~G~i~l~Giv 945 (1051)
T TIGR00914 906 LLVFTGIPFALTGGVFALWLRGI------PLSISAAVGFIALSGVA 945 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC------CccHHHHHHHHHHHHHH
Confidence 34445667777777776654442 22445688888875444
No 187
>MTH00119 CYTB cytochrome b; Provisional
Probab=20.75 E-value=6.5e+02 Score=24.16 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=27.9
Q ss_pred cccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 205 ISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 205 ~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
.+.|.+=.-..++++.+...-+++...-+ | ..-++.|.+++++.+...++|..+.
T Consensus 81 R~~H~~ga~~~~~~~~lH~~r~~~~gsy~---~----~~~W~~Gv~l~~l~~~~~f~Gy~Lp 135 (380)
T MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYL---Y----KETWNTGVILLLLLMATAFVGYVLP 135 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhceec---c----cchhhhhhHHHHHHHHHHHHhcccc
Confidence 45566544455555555555454331110 1 1135666666666666666666553
No 188
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=20.62 E-value=4.5e+02 Score=26.54 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhhee
Q 021260 137 KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQL 194 (315)
Q Consensus 137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~ 194 (315)
...|-++-.+.-++-+-++++=.+|.|..++.|.++-+...-+-.+...+|++-|+..
T Consensus 16 ~~fH~lFvpltiGL~~llai~E~~~~rtg~~~y~~larFW~Klf~InFavGVvTGivm 73 (522)
T PRK15097 16 AMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTM 73 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3566666665555555566666688888888887777766554444444566666543
No 189
>MTH00086 CYTB cytochrome b; Provisional
Probab=20.55 E-value=4.1e+02 Score=25.37 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhHHHHHHHHHHHHHHHhhhheecccccc
Q 021260 138 KNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLNV 200 (315)
Q Consensus 138 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~ 200 (315)
.-=|.+..++..+-.-.|++.+-++.+. .-.| ..+|+..-..-+++..+=+.=++.. +....
T Consensus 20 w~~Gsll~~~l~iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~y-gsy~~ 98 (355)
T MTH00086 20 WNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFM-MSYRL 98 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHH-cccCC
Confidence 3348888888888888899888666542 1234 3556543332222222212222222 11111
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 201 KNANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 201 ~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
..==++|++++++.......|+..|.-
T Consensus 99 -----~~~W~~Gv~l~~l~m~~af~GYvLpw~ 125 (355)
T MTH00086 99 -----KKVWISGLTIYLLVMMEAFMGYVLVWA 125 (355)
T ss_pred -----chHHHHhHHHHHHHHHHHHhhhhcccC
Confidence 112478999999999999999988765
No 190
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.54 E-value=3.8e+02 Score=25.14 Aligned_cols=58 Identities=31% Similarity=0.466 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHhheeccCC-CCCCcccccchhHHHHHHH-HH--HHHHHHHHhhhhcc
Q 021260 210 GIGIFILVLSILQILAFFLRPSK-DSKFRRFWNWYHHWFGRLA-LF--FASVNIVLGIQIGY 267 (315)
Q Consensus 210 ~iG~~~~~l~~~Q~~~g~~r~~~-~~~~r~~~~~~H~~~G~~~-~~--l~~~~i~~Gl~~~~ 267 (315)
...+++++..++..+.--+|.+. +.+.|+.|+..-...+.+. ++ ....|+..|+....
T Consensus 83 lpl~liL~~li~RgvafefR~~~~~~~~r~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~~ 144 (328)
T PF02322_consen 83 LPLFLILLGLILRGVAFEFRHKADSPRWRRFWDWVFFIGSLLPPFLLGVALGNLVSGLPIDA 144 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccc
Confidence 33444445555566555577765 4566788887766555533 22 34558888877764
No 191
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=20.50 E-value=5.5e+02 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.568 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhh
Q 021260 168 LWYYLHAIIQLVGFIFGLATVLLGI 192 (315)
Q Consensus 168 ~wf~~H~~~~~~~~~~~~~g~~l~~ 192 (315)
.|+.+|..+-.++..+..++++.+.
T Consensus 70 ~~l~iHv~~~~~~ya~~~ia~~~al 94 (214)
T PF01578_consen 70 PWLYIHVPLALLGYAAFAIAALAAL 94 (214)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4677777777666665555555554
No 192
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=20.44 E-value=8.6e+02 Score=24.24 Aligned_cols=27 Identities=19% Similarity=-0.175 Sum_probs=13.9
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhhhhh
Q 021260 133 SSREKKNHGALGMIGWGIILPVGAIIP 159 (315)
Q Consensus 133 ~~~~~~~Hg~lm~~aw~~l~p~gil~a 159 (315)
.++..+.+-+..++...+=.-.|.+.+
T Consensus 43 ~~~~~~~~~~~a~~~~lig~l~Gl~~a 69 (493)
T cd01661 43 SDGPVFVGVIATMFWGLVGSLVGLIAA 69 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555544444444555544
No 193
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.37 E-value=4.7e+02 Score=21.19 Aligned_cols=12 Identities=0% Similarity=-0.113 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 021260 285 LAVIVLETLSWM 296 (315)
Q Consensus 285 ~~~~~le~~~~~ 296 (315)
..++...+++++
T Consensus 44 ~~~~a~~vr~~~ 55 (138)
T PF11377_consen 44 ELWLAWQVRRRI 55 (138)
T ss_pred HHHHHHHHHHHH
Confidence 333333344444
No 194
>COG4760 Predicted membrane protein [Function unknown]
Probab=20.16 E-value=5.9e+02 Score=22.49 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccC------CC--cchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 021260 243 YHHWFGRLALFFASVNIVLGIQIGYA------GN--EWKIGYGFLLAVVLLAVIVLETLSWMKK 298 (315)
Q Consensus 243 ~H~~~G~~~~~l~~~~i~~Gl~~~~~------~~--~~~~~y~~~~~~~~~~~~~le~~~~~~~ 298 (315)
+-..+-.+++.++..+..+-++..+. |. .|-++++.. +-++++.+|+++-.+.
T Consensus 212 ~~IiFSLfcigiAAf~fllDFDaad~~vr~GAP~kmaWgvAlGL~---VTLVWLY~EiLRLLSy 272 (276)
T COG4760 212 FGIIFSLFCIGIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLT---VTLVWLYLEILRLLSY 272 (276)
T ss_pred eEeeHHHHHHHHHHHHHHhhhhHHHHHHHcCChhhhHHHHHHhHH---HHHHHHHHHHHHHHHH
Confidence 34455566666666666666665431 21 233333332 2367788887765543
Done!