Query 021260
Match_columns 315
No_of_seqs 177 out of 1053
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.6 3.4E-15 1.2E-19 127.3 12.6 121 1-127 44-178 (186)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 88.2 4.8 0.00016 34.4 11.1 58 171-228 20-83 (235)
3 1kqf_C FDH-N gamma, formate de 87.2 1.7 5.8E-05 36.8 7.4 62 205-267 54-136 (217)
4 2ks1_B Epidermal growth factor 55.1 25 0.00084 21.9 4.6 29 273-301 12-41 (44)
5 2l2t_A Receptor tyrosine-prote 53.5 36 0.0012 21.2 5.1 31 272-302 10-41 (44)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 49.9 1.1E+02 0.0039 25.5 10.7 57 135-192 17-82 (235)
7 2jwa_A Receptor tyrosine-prote 45.0 30 0.001 21.6 3.8 22 278-299 17-38 (44)
8 1vf5_A Cytochrome B6; photosyn 44.2 61 0.0021 27.4 6.9 105 139-266 35-139 (215)
9 1vf5_A Cytochrome B6; photosyn 43.2 96 0.0033 26.2 8.0 67 210-276 35-122 (215)
10 2qjy_A Cytochrome B; cytochrom 34.1 1.2E+02 0.0043 28.4 8.0 84 181-269 56-153 (445)
11 1kqf_C FDH-N gamma, formate de 32.0 2.1E+02 0.0072 23.4 10.3 52 213-264 118-175 (217)
12 2qjy_A Cytochrome B; cytochrom 27.6 1E+02 0.0034 29.1 6.2 89 140-232 47-152 (445)
13 3cx5_C Cytochrome B-C1 complex 26.7 2E+02 0.0069 26.4 7.9 84 181-269 41-138 (385)
14 3cx5_C Cytochrome B-C1 complex 25.3 1.2E+02 0.0041 28.0 6.1 89 140-232 32-137 (385)
15 4ev6_A Magnesium transport pro 24.2 86 0.003 28.0 4.9 39 252-290 290-329 (339)
16 4djk_A Probable glutamate/gamm 24.1 2.4E+02 0.0084 26.0 8.4 15 245-259 409-423 (511)
17 3zux_A Transporter, ASBTNM; tr 22.2 3E+02 0.01 24.4 8.2 17 140-156 165-181 (332)
18 2nr1_A NR1 M2, M2; receptor, s 21.0 64 0.0022 17.7 2.0 16 141-156 10-25 (27)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.62 E-value=3.4e-15 Score=127.30 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=93.9
Q ss_pred CEEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEE
Q 021260 1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYM 80 (315)
Q Consensus 1 i~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~ 80 (315)
+.|+|++|.+.||+|||++ ++|.|++|+|+|+++ |++++++|+.+||.+|++...+-++++..++ ..+++++++
T Consensus 44 ~~~qi~~p~~~gW~g~g~G--g~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~~~~~~lL~gs---~vn~t~~~~ 117 (186)
T 1d7b_A 44 FIGEVVAPIASKWIGIALG--GAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTGTATLTTLPET---TINSTHWKW 117 (186)
T ss_dssp EEEEEEEETTCCEEEEETT--SSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCSSCEEEECTTC---EECSSEEEE
T ss_pred EEEEEEccCCCCEEEEecC--CCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCCCceEEEcccc---cEeCCEEEE
Confidence 4689999988899999996 599999999999985 8899999999999999843332346665553 378889999
Q ss_pred EEEEe----c-CC----CCCcccEEEeecCCCCC-----CCCccccCCCCceeEeecCCCc
Q 021260 81 AFQLK----F-EN----HLRQQPIILAFGSRYPK-----HFHLTHHVDKRTIMFDFSGGSS 127 (315)
Q Consensus 81 ~f~r~----~-~~----~~~~~~~I~A~G~~~~s-----~~~l~~H~~~gs~~ldl~~G~~ 127 (315)
.|+++ . .+ ......++||+++..|. +..+.+|+.+|.+.+||.....
T Consensus 118 ~f~C~~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~~G~~~~dL~~a~~ 178 (186)
T 1d7b_A 118 VFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYSTAHS 178 (186)
T ss_dssp EEEEETTTBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEEEEEEEGGGCBC
T ss_pred EEEeCCCcccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhCcceEEEEcccccc
Confidence 99885 1 11 12223899999766431 4689999999999999997543
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=88.20 E-value=4.8 Score=34.44 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheecc--ccccCC----CCcccchhhhHHHHHHHHHHHHhhee
Q 021260 171 YLHAIIQLVGFIFGLATVLLGIQLYN--KLNVKN----ANISAHRGIGIFILVLSILQILAFFL 228 (315)
Q Consensus 171 ~~H~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~----~~~~~H~~iG~~~~~l~~~Q~~~g~~ 228 (315)
-+|+..=++-+++.+.|+.+...... +..... .....|..+|+++++++++-.+.++.
T Consensus 20 ~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 20 IWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46776655555555556555432110 100000 01247999999999999888877764
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=87.17 E-value=1.7 Score=36.77 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=39.9
Q ss_pred cccchhhhHHHHHHHHHHHHhheec---cCCCC------------------CCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260 205 ISAHRGIGIFILVLSILQILAFFLR---PSKDS------------------KFRRFWNWYHHWFGRLALFFASVNIVLGI 263 (315)
Q Consensus 205 ~~~H~~iG~~~~~l~~~Q~~~g~~r---~~~~~------------------~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl 263 (315)
...|.++|+++++++++-.+ .+.| |.+.+ +....+|+..+..=.+++++..+.+.+|+
T Consensus 54 ~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~ 132 (217)
T 1kqf_C 54 RILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGV 132 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888877766443 1111 22110 11234677777766788888999999999
Q ss_pred hhcc
Q 021260 264 QIGY 267 (315)
Q Consensus 264 ~~~~ 267 (315)
.+..
T Consensus 133 ~~~~ 136 (217)
T 1kqf_C 133 IIWR 136 (217)
T ss_dssp HTCT
T ss_pred HHHH
Confidence 8875
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=55.06 E-value=25 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HhhhCCC
Q 021260 273 KIGYGFLLAVVLLAVIVLETLS-WMKKRSD 301 (315)
Q Consensus 273 ~~~y~~~~~~~~~~~~~le~~~-~~~~~~~ 301 (315)
.|+-+++.++.+++.+.+-+.- ||+||++
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3555665555555544444333 4444443
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=53.47 E-value=36 Score=21.19 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHH-HHhhhCCCC
Q 021260 272 WKIGYGFLLAVVLLAVIVLETL-SWMKKRSDK 302 (315)
Q Consensus 272 ~~~~y~~~~~~~~~~~~~le~~-~~~~~~~~~ 302 (315)
..|+-+++.++.+++.+.+-+. -||+||+.+
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3455555555555444444433 355555443
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=49.89 E-value=1.1e+02 Score=25.54 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=32.8
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhccC--CCC------hh-hhhhHHHHHHHHHHHHHHHhhhh
Q 021260 135 REKKNHGALGMIGWGIILPVGAIIPRYFKH--KDP------LW-YYLHAIIQLVGFIFGLATVLLGI 192 (315)
Q Consensus 135 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~--~~~------~w-f~~H~~~~~~~~~~~~~g~~l~~ 192 (315)
..+..| +++++++.+++..|..+...... ..+ .| ..+|..+..+-+++.+.=++..+
T Consensus 17 ~~R~~H-W~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 17 PVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp CTTHHH-HHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566 57888888888888665432210 111 12 35899888776655555444444
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=44.99 E-value=30 Score=21.55 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q 021260 278 FLLAVVLLAVIVLETLSWMKKR 299 (315)
Q Consensus 278 ~~~~~~~~~~~~le~~~~~~~~ 299 (315)
.++++++++.+.+-+.-|.+||
T Consensus 17 ~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhheehh
Confidence 3344444444444444555544
No 8
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=44.24 E-value=61 Score=27.39 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHH
Q 021260 139 NHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVL 218 (315)
Q Consensus 139 ~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l 218 (315)
.=|.+..+++++..-.|++.+-++.+.-. .+..++. -+ .++.....-....|+.=.-..+++
T Consensus 35 ~fGsll~~~l~iqi~TG~~Lam~Y~p~~~------~Af~Sv~-------~I-----~~dv~~GwliR~~H~~gAs~ffi~ 96 (215)
T 1vf5_A 35 CLGGITLTCFLIQFATGFAMTFYYKPTVT------EAYASVQ-------YI-----MNEVSFGWLIRSIHRWSASMMVLM 96 (215)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTTCCCSTT------THHHHHH-------HH-----HTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCChh------HHHHHHH-------HH-----HhhcccchhhccchHHHHHHHHHH
Confidence 34888888888888888888866665311 0111100 00 011111012446777777777777
Q ss_pred HHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260 219 SILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 266 (315)
Q Consensus 219 ~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~ 266 (315)
+.+...-|++...-+.++. .=+..|.+++++.+++.++|..+.
T Consensus 97 ~ylHi~Rglyygsy~~p~~-----~~W~~Gv~l~~l~m~~aF~GYvLP 139 (215)
T 1vf5_A 97 MILHVFRVYLTGGFKKPRE-----LTWISGVILAVITVSFGVTGYSLP 139 (215)
T ss_dssp HHHHHHHHHHTTSSSSSCS-----HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhhcccCCC-----ceeHhHHHHHHHHHHHHHcccccC
Confidence 7777777765422111111 235688888888888888887665
No 9
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=43.16 E-value=96 Score=26.16 Aligned_cols=67 Identities=16% Similarity=0.314 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHhhee-----ccCC------------CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc--CCC
Q 021260 210 GIGIFILVLSILQILAFFL-----RPSK------------DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY--AGN 270 (315)
Q Consensus 210 ~iG~~~~~l~~~Q~~~g~~-----r~~~------------~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~--~~~ 270 (315)
.+|-++....++|.+.|++ .|.. +-+.-...+.+|.+-.-..+++-.+-++-|+.... .++
T Consensus 35 ~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~ 114 (215)
T 1vf5_A 35 CLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPR 114 (215)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 4899999999999998853 3442 22344556889999999999999999999987643 345
Q ss_pred --cchhhH
Q 021260 271 --EWKIGY 276 (315)
Q Consensus 271 --~~~~~y 276 (315)
.|.++.
T Consensus 115 ~~~W~~Gv 122 (215)
T 1vf5_A 115 ELTWISGV 122 (215)
T ss_dssp SHHHHHHH
T ss_pred CceeHhHH
Confidence 355543
No 10
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=34.06 E-value=1.2e+02 Score=28.43 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++..+.|+.+++.+..+.. ...-....|++=.-..++++.+...-|++...-+.+ | ..=+.
T Consensus 56 ~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~P-r----~~~W~ 130 (445)
T 2qjy_A 56 VLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAP-R----EVTWI 130 (445)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTT-C----HHHHH
T ss_pred HHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-c----cceee
Confidence 3345678888876543221 101234678887777777778888777665222111 1 23467
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC
Q 021260 247 FGRLALFFASVNIVLGIQIGYAG 269 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~ 269 (315)
.|.+++++.+++.++|..+....
T Consensus 131 ~Gv~l~ll~m~taF~GYvLPwgQ 153 (445)
T 2qjy_A 131 VGMLIYLAMMATAFMGYVLPWGQ 153 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBH
T ss_pred ehHHHHHHHHHHHHHheeccCCc
Confidence 99999999999999999998643
No 11
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=31.96 E-value=2.1e+02 Score=23.37 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhheeccCCC------CCCcccccchhHHHHHHHHHHHHHHHHHhhh
Q 021260 213 IFILVLSILQILAFFLRPSKD------SKFRRFWNWYHHWFGRLALFFASVNIVLGIQ 264 (315)
Q Consensus 213 ~~~~~l~~~Q~~~g~~r~~~~------~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~ 264 (315)
+.+.+++++|++.|++.-... .........+|.+.+.+++++.++=+...+.
T Consensus 118 ~~l~~l~~~~~~TG~~~~~~~~~~~~~~~~~~~~~~iH~~~a~~l~~~v~~Hv~~al~ 175 (217)
T 1kqf_C 118 WSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666677889999997532210 0112334668888888887776665665543
No 12
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=27.64 E-value=1e+02 Score=29.07 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhHHHHHHHHHHHHHHHhhhheeccccccCC
Q 021260 140 HGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKN 202 (315)
Q Consensus 140 Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 202 (315)
=|.+..+++++..-.|++.+-++.+. .-.| ..+|+.--.+-+++.-+=+.=++.. +...
T Consensus 47 fGsll~~~l~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~Rglyy-gsY~--- 122 (445)
T 2qjy_A 47 WGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYY-GSYK--- 122 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTS---
T ss_pred hHHHHHHHHHHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccC---
Confidence 58999999999999999988776542 1234 3566543332222222222222222 1111
Q ss_pred CCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 203 ANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 203 ~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
.....==.+|++++++.....+.|+..|.-
T Consensus 123 ~Pr~~~W~~Gv~l~ll~m~taF~GYvLPwg 152 (445)
T 2qjy_A 123 APREVTWIVGMLIYLAMMATAFMGYVLPWG 152 (445)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred CCccceeeehHHHHHHHHHHHHHheeccCC
Confidence 112334578999999999999999988765
No 13
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=26.75 E-value=2e+02 Score=26.41 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhheeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260 181 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 246 (315)
Q Consensus 181 ~~~~~~g~~l~~~~~~~~~--------------~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 246 (315)
++-.+.|+.+++.+..+.. ...-..+.|+.=.-..++++.+...-|++...-+.++ ..=+.
T Consensus 41 ~iqi~TGifLam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr-----~~~W~ 115 (385)
T 3cx5_C 41 VIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPR-----VTLWN 115 (385)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC-----HHHHH
T ss_pred HHHHHHHHHHHeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-----cceee
Confidence 3345568888775543221 0012346788877777788888887787653221111 13467
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC
Q 021260 247 FGRLALFFASVNIVLGIQIGYAG 269 (315)
Q Consensus 247 ~G~~~~~l~~~~i~~Gl~~~~~~ 269 (315)
.|.+++++.+++.++|..+....
T Consensus 116 ~Gv~l~ll~m~~aF~GYvLPwgQ 138 (385)
T 3cx5_C 116 VGVIIFILTIATAFLGYCCVYGQ 138 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBH
T ss_pred ecHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999987643
No 14
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=25.28 E-value=1.2e+02 Score=27.99 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhHHHHHHHHHHHHHHHhhhheeccccccCC
Q 021260 140 HGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKN 202 (315)
Q Consensus 140 Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 202 (315)
=|.+..+++++..-.|++.+-++.+. .-.| ..+|+.--..-+++.-+=+.=++...+ ..
T Consensus 32 fGsll~~~l~iqi~TGifLam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygs-y~--- 107 (385)
T 3cx5_C 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGS-YR--- 107 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TS---
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cC---
Confidence 58999999999999999988776542 1234 356654333322222222222222211 11
Q ss_pred CCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260 203 ANISAHRGIGIFILVLSILQILAFFLRPSK 232 (315)
Q Consensus 203 ~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~ 232 (315)
.....==.+|++++++.......|+..|.-
T Consensus 108 ~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwg 137 (385)
T 3cx5_C 108 SPRVTLWNVGVIIFILTIATAFLGYCCVYG 137 (385)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCB
T ss_pred CCCcceeeecHHHHHHHHHHHHHhhhccCC
Confidence 112334578999999999999999988765
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=24.16 E-value=86 Score=27.98 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhccC-CCcchhhHHHHHHHHHHHHHHH
Q 021260 252 LFFASVNIVLGIQIGYA-GNEWKIGYGFLLAVVLLAVIVL 290 (315)
Q Consensus 252 ~~l~~~~i~~Gl~~~~~-~~~~~~~y~~~~~~~~~~~~~l 290 (315)
+.+..++.+.|+...+- ...|..+|.+++++++++.+++
T Consensus 290 lP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~ 329 (339)
T 4ev6_A 290 AVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIF 329 (339)
T ss_dssp SHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHH
Confidence 34556666677776543 3456666666666655555544
No 16
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.05 E-value=2.4e+02 Score=25.96 Aligned_cols=15 Identities=0% Similarity=-0.128 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 021260 245 HWFGRLALFFASVNI 259 (315)
Q Consensus 245 ~~~G~~~~~l~~~~i 259 (315)
++..+.+-+++.+-+
T Consensus 409 ~~~~~~~~~~~~~~~ 423 (511)
T 4djk_A 409 KGVKLVVAIVGLLTS 423 (511)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 333333333343333
No 17
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=22.19 E-value=3e+02 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHhhhh
Q 021260 140 HGALGMIGWGIILPVGA 156 (315)
Q Consensus 140 Hg~lm~~aw~~l~p~gi 156 (315)
-..+..+...++.|+.+
T Consensus 165 ~~~~~~l~~~vllP~~l 181 (332)
T 3zux_A 165 AGMLMSIVKMVLLPIVL 181 (332)
T ss_dssp HHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566777788888654
No 18
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=20.99 E-value=64 Score=17.71 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 021260 141 GALGMIGWGIILPVGA 156 (315)
Q Consensus 141 g~lm~~aw~~l~p~gi 156 (315)
..-|..+|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 4568889999988776
Done!