Query 021262
Match_columns 315
No_of_seqs 242 out of 1356
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00254 40S ribosomal protein 100.0 2.3E-85 5E-90 608.7 22.2 218 8-225 4-221 (249)
2 KOG0830 40S ribosomal protein 100.0 2.8E-81 6.1E-86 572.6 15.0 245 34-285 1-252 (254)
3 TIGR01012 Sa_S2_E_A ribosomal 100.0 1.6E-74 3.5E-79 521.0 19.1 195 15-210 2-196 (196)
4 PRK04020 rps2P 30S ribosomal p 100.0 4.3E-70 9.3E-75 494.9 17.4 193 17-210 10-202 (204)
5 COG0052 RpsB Ribosomal protein 100.0 7.6E-63 1.7E-67 455.8 15.1 188 16-204 3-238 (252)
6 PRK12311 rpsB 30S ribosomal pr 100.0 1.7E-57 3.7E-62 437.2 15.3 173 19-192 1-222 (326)
7 PRK05299 rpsB 30S ribosomal pr 100.0 6.6E-57 1.4E-61 421.7 15.6 176 16-192 3-227 (258)
8 TIGR01011 rpsB_bact ribosomal 100.0 3.6E-56 7.8E-61 409.3 16.4 174 17-191 2-224 (225)
9 CHL00067 rps2 ribosomal protei 100.0 9.4E-55 2E-59 401.0 15.3 177 13-190 4-229 (230)
10 cd01425 RPS2 Ribosomal protein 100.0 1.9E-54 4.1E-59 388.6 14.3 166 22-188 1-193 (193)
11 PF00318 Ribosomal_S2: Ribosom 100.0 2.5E-51 5.4E-56 373.1 15.9 168 22-190 1-211 (211)
12 KOG0832 Mitochondrial/chloropl 100.0 8E-48 1.7E-52 351.6 15.0 175 17-192 48-243 (251)
13 PRK12570 N-acetylmuramic acid- 96.2 0.062 1.3E-06 51.9 11.5 147 56-206 38-224 (296)
14 cd05007 SIS_Etherase N-acetylm 96.0 0.048 1E-06 51.4 9.6 147 56-206 29-215 (257)
15 PRK05441 murQ N-acetylmuramic 95.8 0.15 3.2E-06 49.3 12.2 148 55-206 41-228 (299)
16 TIGR00274 N-acetylmuramic acid 95.1 0.21 4.6E-06 48.1 10.8 148 55-206 36-223 (291)
17 cd05005 SIS_PHI Hexulose-6-pho 93.8 1.4 3.1E-05 38.5 12.2 108 54-169 10-130 (179)
18 PRK00414 gmhA phosphoheptose i 93.7 1.7 3.7E-05 39.2 12.7 109 58-169 26-164 (192)
19 cd05006 SIS_GmhA Phosphoheptos 93.5 2.9 6.4E-05 36.5 13.7 110 59-168 16-153 (177)
20 PRK10892 D-arabinose 5-phospha 93.4 1.6 3.4E-05 41.8 12.6 135 55-192 25-182 (326)
21 TIGR03127 RuMP_HxlB 6-phospho 93.3 1.9 4.1E-05 37.6 12.1 89 72-165 27-121 (179)
22 PRK13938 phosphoheptose isomer 92.4 1.8 3.9E-05 39.4 11.0 112 56-168 25-165 (196)
23 PF13580 SIS_2: SIS domain; PD 92.2 0.62 1.3E-05 39.5 7.2 94 59-152 18-137 (138)
24 PRK02947 hypothetical protein; 91.4 2.9 6.2E-05 39.1 11.3 96 59-155 23-143 (246)
25 PRK13936 phosphoheptose isomer 91.1 3.3 7.2E-05 37.3 11.2 105 60-170 27-168 (197)
26 PRK10886 DnaA initiator-associ 90.7 2.4 5.3E-05 38.6 9.9 114 59-172 24-168 (196)
27 PRK11557 putative DNA-binding 90.6 2.7 5.9E-05 39.2 10.4 48 120-167 173-226 (278)
28 PRK11302 DNA-binding transcrip 90.6 2.6 5.7E-05 39.2 10.3 48 120-167 173-225 (284)
29 PRK00331 glucosamine--fructose 90.3 2.6 5.5E-05 44.1 11.0 121 72-194 286-423 (604)
30 PRK15482 transcriptional regul 89.4 3.8 8.3E-05 38.5 10.4 50 120-169 180-235 (285)
31 PF10087 DUF2325: Uncharacteri 89.1 1.5 3.2E-05 35.1 6.4 75 77-151 1-81 (97)
32 cd05013 SIS_RpiR RpiR-like pro 88.2 4.9 0.00011 32.3 9.0 50 121-170 59-114 (139)
33 TIGR00441 gmhA phosphoheptose 88.1 9.5 0.00021 32.8 11.3 50 120-169 77-132 (154)
34 PRK11382 frlB fructoselysine-6 88.1 6.6 0.00014 38.3 11.4 108 60-169 30-145 (340)
35 PRK13937 phosphoheptose isomer 88.1 12 0.00026 33.4 12.2 101 60-166 22-156 (188)
36 PRK14101 bifunctional glucokin 87.9 4.3 9.4E-05 42.9 10.7 49 120-168 513-566 (638)
37 cd05710 SIS_1 A subgroup of th 87.7 3.7 8.1E-05 33.8 8.2 51 120-170 45-101 (120)
38 TIGR00393 kpsF KpsF/GutQ famil 87.5 4.1 9E-05 37.5 9.2 74 120-193 45-136 (268)
39 cd05008 SIS_GlmS_GlmD_1 SIS (S 87.1 3.5 7.6E-05 33.4 7.6 46 120-165 44-95 (126)
40 cd05009 SIS_GlmS_GlmD_2 SIS (S 86.9 16 0.00035 30.2 11.9 117 72-193 10-141 (153)
41 PRK11337 DNA-binding transcrip 85.3 8.4 0.00018 36.2 10.2 48 120-167 185-238 (292)
42 PRK08674 bifunctional phosphog 84.6 16 0.00035 35.5 12.0 72 121-194 77-159 (337)
43 cd05014 SIS_Kpsf KpsF-like pro 83.3 6.6 0.00014 31.8 7.5 48 120-167 45-98 (128)
44 COG2103 Predicted sugar phosph 82.1 13 0.00027 36.3 9.9 148 55-206 39-226 (298)
45 COG0279 GmhA Phosphoheptose is 78.6 30 0.00065 31.5 10.5 114 56-169 21-164 (176)
46 PF01380 SIS: SIS domain SIS d 78.2 9.8 0.00021 30.6 6.9 95 72-171 2-110 (131)
47 COG1737 RpiR Transcriptional r 75.9 19 0.00041 34.2 9.1 48 120-167 175-228 (281)
48 TIGR01135 glmS glucosamine--fr 74.1 17 0.00037 38.0 9.0 75 120-194 336-425 (607)
49 PRK15408 autoinducer 2-binding 73.8 29 0.00062 33.7 9.9 90 73-165 21-124 (336)
50 PRK11543 gutQ D-arabinose 5-ph 73.7 19 0.0004 34.3 8.5 46 120-165 87-138 (321)
51 cd06325 PBP1_ABC_uncharacteriz 72.4 5.9 0.00013 35.6 4.5 93 63-155 118-221 (281)
52 PRK07765 para-aminobenzoate sy 71.5 8.7 0.00019 35.2 5.5 76 77-153 2-84 (214)
53 TIGR01470 cysG_Nterm siroheme 69.9 9.5 0.00021 34.8 5.3 75 65-149 21-98 (205)
54 PTZ00295 glucosamine-fructose- 69.8 32 0.0007 36.5 10.0 47 122-168 369-421 (640)
55 cd06295 PBP1_CelR Ligand bindi 69.0 8.3 0.00018 34.7 4.7 45 121-166 63-107 (275)
56 PF04007 DUF354: Protein of un 67.3 17 0.00036 36.0 6.8 91 61-157 12-115 (335)
57 cd06294 PBP1_ycjW_transcriptio 64.4 20 0.00042 31.9 6.1 58 122-183 60-118 (270)
58 PRK13566 anthranilate synthase 64.3 39 0.00085 36.9 9.4 75 74-152 525-605 (720)
59 PLN02981 glucosamine:fructose- 63.5 62 0.0013 34.9 10.7 92 72-166 360-460 (680)
60 cd06278 PBP1_LacI_like_2 Ligan 63.0 24 0.00051 31.2 6.4 45 121-166 53-97 (266)
61 PRK05670 anthranilate synthase 61.4 14 0.0003 32.7 4.6 71 78-152 2-79 (189)
62 cd06267 PBP1_LacI_sugar_bindin 60.7 26 0.00056 30.5 6.1 59 121-183 54-112 (264)
63 PRK11070 ssDNA exonuclease Rec 60.3 39 0.00085 35.9 8.3 96 59-155 52-160 (575)
64 cd03786 GT1_UDP-GlcNAc_2-Epime 58.9 53 0.0012 30.9 8.3 36 121-160 276-311 (363)
65 cd03420 SirA_RHOD_Pry_redox Si 58.1 19 0.00042 27.0 4.2 52 63-114 14-65 (69)
66 PTZ00394 glucosamine-fructose- 58.0 72 0.0016 34.4 10.0 96 71-168 350-453 (670)
67 TIGR01815 TrpE-clade3 anthrani 57.5 62 0.0013 35.4 9.4 75 74-152 515-595 (717)
68 TIGR00315 cdhB CO dehydrogenas 56.4 79 0.0017 28.2 8.4 77 78-156 31-137 (162)
69 COG2222 AgaS Predicted phospho 55.4 1.9E+02 0.0042 28.7 11.8 131 57-188 18-159 (340)
70 PRK06456 acetolactate synthase 55.4 57 0.0012 33.8 8.5 72 61-134 196-285 (572)
71 cd05017 SIS_PGI_PMI_1 The memb 55.0 16 0.00034 29.9 3.6 56 120-176 41-107 (119)
72 COG1880 CdhB CO dehydrogenase/ 54.8 47 0.001 30.0 6.7 94 64-166 27-153 (170)
73 PF01206 TusA: Sulfurtransfera 53.5 25 0.00054 26.0 4.1 50 62-111 14-63 (70)
74 COG0794 GutQ Predicted sugar p 53.5 1.9E+02 0.0041 26.9 11.2 97 73-170 37-142 (202)
75 cd06283 PBP1_RegR_EndR_KdgR_li 53.5 38 0.00082 29.9 6.0 43 121-164 54-96 (267)
76 PRK05562 precorrin-2 dehydroge 52.2 28 0.00061 32.6 5.1 71 73-153 46-118 (223)
77 cd06271 PBP1_AglR_RafR_like Li 51.8 26 0.00056 31.0 4.7 43 122-165 59-101 (268)
78 PRK15179 Vi polysaccharide bio 51.2 35 0.00076 37.0 6.3 112 54-170 527-644 (694)
79 PRK11009 aphA acid phosphatase 50.4 1.1E+02 0.0025 28.7 8.9 110 53-168 96-224 (237)
80 cd06273 PBP1_GntR_like_1 This 50.3 47 0.001 29.5 6.1 57 122-182 55-111 (268)
81 cd01748 GATase1_IGP_Synthase T 49.2 39 0.00085 30.0 5.4 19 135-153 61-79 (198)
82 PRK15484 lipopolysaccharide 1, 49.0 50 0.0011 32.1 6.6 98 59-160 208-315 (380)
83 TIGR03088 stp2 sugar transfera 48.6 82 0.0018 29.7 7.8 99 57-160 207-310 (374)
84 cd01743 GATase1_Anthranilate_S 48.3 43 0.00093 29.3 5.5 72 78-152 1-78 (184)
85 PF02421 FeoB_N: Ferrous iron 48.0 21 0.00045 31.5 3.4 74 77-153 2-113 (156)
86 cd06318 PBP1_ABC_sugar_binding 47.2 83 0.0018 28.2 7.3 45 121-166 54-102 (282)
87 TIGR02128 G6PI_arch bifunction 47.1 2E+02 0.0044 27.9 10.4 60 121-181 65-135 (308)
88 cd00291 SirA_YedF_YeeD SirA, Y 46.7 39 0.00084 24.6 4.2 43 62-104 13-55 (69)
89 PTZ00295 glucosamine-fructose- 46.6 2.3E+02 0.0049 30.2 11.4 118 72-193 493-626 (640)
90 PF13407 Peripla_BP_4: Peripla 46.5 53 0.0011 29.1 5.9 34 121-155 54-89 (257)
91 cd06299 PBP1_LacI_like_13 Liga 46.5 63 0.0014 28.6 6.3 43 122-165 55-97 (265)
92 PF13241 NAD_binding_7: Putati 46.5 4.3 9.4E-05 32.7 -1.1 41 123-167 61-103 (103)
93 CHL00101 trpG anthranilate syn 46.3 59 0.0013 28.9 6.1 72 78-152 2-79 (190)
94 PF00205 TPP_enzyme_M: Thiamin 45.8 49 0.0011 27.4 5.2 69 64-134 3-89 (137)
95 PRK10014 DNA-binding transcrip 45.5 2.5E+02 0.0055 26.1 10.5 44 121-165 119-163 (342)
96 COG0608 RecJ Single-stranded D 45.5 1.1E+02 0.0023 31.5 8.6 96 57-155 17-122 (491)
97 cd05844 GT1_like_7 Glycosyltra 45.2 78 0.0017 29.4 7.0 89 60-151 204-300 (367)
98 PRK06718 precorrin-2 dehydroge 45.1 49 0.0011 30.0 5.5 73 65-148 22-97 (202)
99 cd06274 PBP1_FruR Ligand bindi 44.5 94 0.002 27.6 7.2 43 122-165 55-97 (264)
100 PRK06774 para-aminobenzoate sy 44.5 62 0.0014 28.6 6.0 70 78-152 2-79 (191)
101 cd06285 PBP1_LacI_like_7 Ligan 44.0 69 0.0015 28.5 6.3 35 121-156 54-88 (265)
102 cd06305 PBP1_methylthioribose_ 44.0 75 0.0016 28.2 6.4 42 122-164 55-98 (273)
103 COG0560 SerB Phosphoserine pho 43.7 41 0.00088 30.8 4.7 98 65-172 82-190 (212)
104 COG0028 IlvB Thiamine pyrophos 43.4 1.5E+02 0.0033 31.2 9.4 106 60-168 188-316 (550)
105 PRK05749 3-deoxy-D-manno-octul 43.1 93 0.002 30.5 7.5 91 59-151 246-350 (425)
106 cd03808 GT1_cap1E_like This fa 43.0 1.9E+02 0.0041 25.6 8.9 42 119-161 260-302 (359)
107 cd04949 GT1_gtfA_like This fam 43.0 86 0.0019 29.5 7.0 91 57-151 217-308 (372)
108 PLN02335 anthranilate synthase 43.0 52 0.0011 30.3 5.3 77 73-152 16-98 (222)
109 PRK00025 lpxB lipid-A-disaccha 42.2 95 0.0021 29.6 7.2 85 59-154 204-289 (380)
110 TIGR02815 agaS_fam putative su 42.0 3.2E+02 0.0069 27.1 11.1 112 75-188 42-176 (372)
111 TIGR01591 Fdh-alpha formate de 41.8 2.4E+02 0.0051 29.8 10.7 106 43-151 58-190 (671)
112 cd06292 PBP1_LacI_like_10 Liga 41.3 71 0.0015 28.4 5.9 35 121-156 54-93 (273)
113 TIGR00566 trpG_papA glutamine 41.2 58 0.0013 29.0 5.2 30 122-152 43-79 (188)
114 cd01536 PBP1_ABC_sugar_binding 41.0 72 0.0016 27.8 5.8 33 122-154 181-217 (267)
115 PF06258 Mito_fiss_Elm1: Mitoc 40.9 2E+02 0.0043 28.0 9.3 102 42-151 152-255 (311)
116 PLN02846 digalactosyldiacylgly 40.6 71 0.0015 33.0 6.4 92 54-152 238-331 (462)
117 COG1879 RbsB ABC-type sugar tr 40.1 60 0.0013 30.4 5.4 70 88-158 52-128 (322)
118 cd03818 GT1_ExpC_like This fam 39.9 1.5E+02 0.0032 28.6 8.3 102 56-161 224-339 (396)
119 cd06270 PBP1_GalS_like Ligand 39.5 76 0.0017 28.2 5.8 35 121-156 54-88 (268)
120 COG0449 GlmS Glucosamine 6-pho 39.5 65 0.0014 34.6 6.0 74 124-197 332-420 (597)
121 cd03819 GT1_WavL_like This fam 39.5 80 0.0017 29.0 6.1 97 59-159 200-301 (355)
122 cd03422 YedF YedF is a bacteri 39.4 62 0.0014 24.3 4.4 40 65-104 16-55 (69)
123 cd06272 PBP1_hexuronate_repres 39.1 78 0.0017 28.1 5.8 35 122-157 51-85 (261)
124 cd06277 PBP1_LacI_like_1 Ligan 38.8 76 0.0016 28.3 5.7 41 121-163 57-97 (268)
125 cd03812 GT1_CapH_like This fam 38.8 1.2E+02 0.0027 27.8 7.2 88 59-151 207-296 (358)
126 PF04413 Glycos_transf_N: 3-De 38.6 40 0.00086 30.3 3.8 86 62-151 34-124 (186)
127 cd06300 PBP1_ABC_sugar_binding 38.5 39 0.00085 30.2 3.7 42 122-164 60-103 (272)
128 cd06307 PBP1_uncharacterized_s 38.3 70 0.0015 28.7 5.4 31 122-152 58-90 (275)
129 PRK05858 hypothetical protein; 37.2 1.3E+02 0.0028 31.1 7.8 72 61-134 192-274 (542)
130 PRK07649 para-aminobenzoate/an 37.1 1E+02 0.0023 27.7 6.3 71 78-152 2-79 (195)
131 cd04795 SIS SIS domain. SIS (S 37.1 82 0.0018 23.3 4.8 33 120-152 45-81 (87)
132 PRK00299 sulfur transfer prote 36.9 66 0.0014 25.0 4.3 41 64-104 25-65 (81)
133 cd06308 PBP1_sensor_kinase_lik 36.2 1.1E+02 0.0024 27.2 6.4 32 121-152 55-88 (270)
134 cd06279 PBP1_LacI_like_3 Ligan 36.1 59 0.0013 29.5 4.6 42 122-165 56-97 (283)
135 cd06306 PBP1_TorT-like TorT-li 36.0 98 0.0021 27.9 6.0 31 121-151 56-87 (268)
136 KOG1554 COP9 signalosome, subu 36.0 16 0.00034 35.9 0.8 42 101-146 140-183 (347)
137 COG1519 KdtA 3-deoxy-D-manno-o 36.0 72 0.0016 32.8 5.5 89 53-151 57-152 (419)
138 cd03796 GT1_PIG-A_like This fa 35.2 1.3E+02 0.0027 29.2 6.9 94 54-150 203-298 (398)
139 PRK06048 acetolactate synthase 34.9 1.5E+02 0.0033 30.7 7.8 72 61-134 196-285 (561)
140 COG1029 FwdB Formylmethanofura 34.8 74 0.0016 32.5 5.2 43 60-102 67-109 (429)
141 cd06311 PBP1_ABC_sugar_binding 34.8 1.3E+02 0.0029 26.8 6.7 34 121-155 59-94 (274)
142 TIGR02634 xylF D-xylose ABC tr 34.3 1.3E+02 0.0029 27.9 6.7 35 121-156 53-89 (302)
143 PRK10637 cysG siroheme synthas 34.3 74 0.0016 32.4 5.4 27 123-149 73-101 (457)
144 cd03821 GT1_Bme6_like This fam 34.3 1.5E+02 0.0032 26.6 6.8 75 75-151 234-311 (375)
145 PRK00945 acetyl-CoA decarbonyl 34.2 2.8E+02 0.0061 25.0 8.5 79 78-156 38-145 (171)
146 cd01575 PBP1_GntR Ligand-bindi 34.0 1.5E+02 0.0032 26.1 6.7 35 121-155 54-88 (268)
147 cd03423 SirA SirA (also known 33.6 78 0.0017 23.6 4.1 50 64-113 15-64 (69)
148 PRK13181 hisH imidazole glycer 33.5 1.1E+02 0.0025 27.1 5.9 34 121-154 36-81 (199)
149 PRK06882 acetolactate synthase 33.4 1.9E+02 0.0041 30.0 8.3 74 61-136 195-286 (574)
150 PF14336 DUF4392: Domain of un 33.4 2E+02 0.0043 27.8 7.9 22 136-157 166-187 (291)
151 cd06317 PBP1_ABC_sugar_binding 33.3 88 0.0019 27.7 5.2 35 121-156 55-91 (275)
152 KOG1401 Acetylornithine aminot 33.3 66 0.0014 33.1 4.7 64 49-112 88-163 (433)
153 cd01574 PBP1_LacI Ligand-bindi 32.9 1.5E+02 0.0032 26.2 6.5 34 122-156 56-89 (264)
154 TIGR01855 IMP_synth_hisH imida 32.8 1.1E+02 0.0024 27.3 5.7 15 139-153 65-79 (196)
155 TIGR01672 AphA HAD superfamily 32.4 1.5E+02 0.0032 27.8 6.7 97 65-168 119-224 (237)
156 cd03421 SirA_like_N SirA_like_ 32.3 1.1E+02 0.0024 22.4 4.7 39 63-102 14-52 (67)
157 PRK09107 acetolactate synthase 32.0 2.1E+02 0.0045 30.1 8.4 72 61-134 201-292 (595)
158 cd06282 PBP1_GntR_like_2 Ligan 32.0 1.4E+02 0.003 26.3 6.2 35 121-156 54-89 (266)
159 TIGR03457 sulphoacet_xsc sulfo 31.8 1.7E+02 0.0037 30.4 7.7 72 61-134 185-274 (579)
160 PRK15395 methyl-galactoside AB 31.5 1.1E+02 0.0024 29.0 5.8 33 121-154 80-114 (330)
161 COG1954 GlpP Glycerol-3-phosph 31.4 33 0.00071 31.4 2.0 127 17-150 14-149 (181)
162 TIGR00173 menD 2-succinyl-5-en 31.1 2.9E+02 0.0062 27.7 8.9 103 62-168 201-324 (432)
163 PRK07710 acetolactate synthase 31.1 1.9E+02 0.0042 30.0 7.9 71 62-134 205-293 (571)
164 PRK09259 putative oxalyl-CoA d 30.8 1.9E+02 0.0041 30.1 7.7 73 60-134 201-284 (569)
165 COG1648 CysG Siroheme synthase 30.6 1.6E+02 0.0034 27.2 6.4 29 123-151 73-103 (210)
166 PRK08266 hypothetical protein; 30.5 1.9E+02 0.0041 29.7 7.7 73 62-136 195-277 (542)
167 PRK10703 DNA-binding transcrip 30.5 4.2E+02 0.0092 24.6 9.5 107 57-165 31-159 (341)
168 PRK15490 Vi polysaccharide bio 30.0 1.8E+02 0.0039 31.2 7.4 100 57-161 411-511 (578)
169 TIGR00888 guaA_Nterm GMP synth 29.8 1.4E+02 0.003 26.3 5.7 19 135-153 60-78 (188)
170 PF11238 DUF3039: Protein of u 29.6 31 0.00066 26.1 1.3 19 136-154 15-33 (58)
171 PRK01710 murD UDP-N-acetylmura 29.4 3.1E+02 0.0067 27.7 8.8 120 49-183 16-140 (458)
172 PTZ00394 glucosamine-fructose- 29.4 4.9E+02 0.011 28.2 10.7 114 73-193 524-656 (670)
173 cd06297 PBP1_LacI_like_12 Liga 29.3 1.5E+02 0.0034 26.5 6.1 33 122-155 55-87 (269)
174 PF13528 Glyco_trans_1_3: Glyc 29.2 88 0.0019 29.0 4.6 35 121-158 93-127 (318)
175 PRK08155 acetolactate synthase 28.7 2.1E+02 0.0044 29.7 7.6 73 61-135 200-290 (564)
176 PRK08978 acetolactate synthase 28.7 2.2E+02 0.0049 29.3 7.8 73 61-135 185-275 (548)
177 PRK08857 para-aminobenzoate sy 28.7 1.8E+02 0.0039 25.8 6.3 71 78-152 2-79 (193)
178 TIGR00118 acolac_lg acetolacta 28.6 2.3E+02 0.005 29.3 7.9 71 62-134 191-279 (558)
179 PRK08199 thiamine pyrophosphat 28.5 2.2E+02 0.0048 29.5 7.8 71 62-134 194-282 (557)
180 cd06298 PBP1_CcpA_like Ligand- 28.5 1E+02 0.0022 27.2 4.7 31 122-152 55-85 (268)
181 cd03822 GT1_ecORF704_like This 28.4 1.9E+02 0.0042 26.1 6.6 46 106-151 250-299 (366)
182 cd06296 PBP1_CatR_like Ligand- 28.3 96 0.0021 27.5 4.5 33 122-155 55-87 (270)
183 COG1029 FwdB Formylmethanofura 28.0 1.6E+02 0.0034 30.2 6.2 73 106-179 318-394 (429)
184 cd06289 PBP1_MalI_like Ligand- 28.0 1.1E+02 0.0024 26.9 4.9 44 122-166 55-99 (268)
185 cd01542 PBP1_TreR_like Ligand- 27.9 1.3E+02 0.0029 26.4 5.3 21 63-84 103-123 (259)
186 PRK06276 acetolactate synthase 27.8 2.2E+02 0.0047 29.8 7.6 72 61-134 192-281 (586)
187 PRK08007 para-aminobenzoate sy 27.8 1.1E+02 0.0024 27.2 4.8 70 78-152 2-79 (187)
188 PF01646 Herpes_UL24: Herpes v 27.7 96 0.0021 28.2 4.4 105 93-210 22-140 (179)
189 TIGR03590 PseG pseudaminic aci 27.6 5.2E+02 0.011 24.2 9.8 115 46-169 5-127 (279)
190 PRK08322 acetolactate synthase 27.6 2.3E+02 0.0051 29.1 7.7 72 61-134 185-274 (547)
191 cd06301 PBP1_rhizopine_binding 27.5 1.7E+02 0.0036 26.0 5.9 42 122-164 56-101 (272)
192 TIGR02149 glgA_Coryne glycogen 27.5 2.1E+02 0.0045 26.9 6.9 45 107-151 264-310 (388)
193 cd02767 MopB_ydeP The MopB_yde 27.3 3.6E+02 0.0079 28.5 9.2 99 50-154 78-200 (574)
194 PF10740 DUF2529: Protein of u 27.3 1.7E+02 0.0037 26.7 5.8 87 61-152 23-115 (172)
195 cd06302 PBP1_LsrB_Quorum_Sensi 27.0 1.2E+02 0.0027 27.9 5.2 35 121-156 55-91 (298)
196 cd01537 PBP1_Repressors_Sugar_ 26.9 99 0.0021 26.7 4.2 119 63-182 107-248 (264)
197 TIGR02417 fruct_sucro_rep D-fr 26.8 1.3E+02 0.0029 27.8 5.4 47 121-168 115-162 (327)
198 PRK06965 acetolactate synthase 26.7 2.5E+02 0.0054 29.4 7.8 74 60-135 209-300 (587)
199 PLN02275 transferase, transfer 26.6 1.1E+02 0.0024 29.6 4.9 72 77-151 263-339 (371)
200 PRK07418 acetolactate synthase 26.4 2.6E+02 0.0057 29.4 8.0 73 60-134 212-302 (616)
201 cd04951 GT1_WbdM_like This fam 26.4 2.3E+02 0.0051 25.8 6.8 88 58-150 202-291 (360)
202 cd01538 PBP1_ABC_xylose_bindin 26.4 1E+02 0.0022 28.1 4.5 34 121-155 54-89 (288)
203 CHL00197 carA carbamoyl-phosph 26.3 1.8E+02 0.004 29.4 6.5 71 76-152 193-270 (382)
204 cd01141 TroA_d Periplasmic bin 26.2 73 0.0016 27.4 3.2 35 117-151 64-98 (186)
205 TIGR01823 PabB-fungal aminodeo 26.2 1.6E+02 0.0034 32.4 6.4 78 74-153 4-94 (742)
206 cd01742 GATase1_GMP_Synthase T 26.1 2E+02 0.0044 24.7 6.1 16 138-153 63-78 (181)
207 PLN02501 digalactosyldiacylgly 26.1 1.7E+02 0.0036 32.6 6.4 94 53-152 555-649 (794)
208 cd06319 PBP1_ABC_sugar_binding 26.1 2.2E+02 0.0047 25.3 6.4 61 121-185 54-117 (277)
209 PRK07789 acetolactate synthase 26.0 2.4E+02 0.0053 29.7 7.6 73 61-135 220-310 (612)
210 PRK11269 glyoxylate carboligas 25.9 2.3E+02 0.0049 29.7 7.3 72 61-134 192-282 (591)
211 cd01540 PBP1_arabinose_binding 25.7 1.9E+02 0.0041 26.0 6.0 32 121-152 53-86 (289)
212 cd01741 GATase1_1 Subgroup of 25.6 2.3E+02 0.005 24.6 6.4 35 120-154 44-90 (188)
213 PRK12362 germination protease; 25.3 4.2E+02 0.0091 26.4 8.6 44 121-169 171-240 (318)
214 CHL00099 ilvB acetohydroxyacid 25.3 2.8E+02 0.0061 29.0 7.9 72 61-134 206-295 (585)
215 cd06312 PBP1_ABC_sugar_binding 25.2 1.7E+02 0.0037 26.2 5.6 32 121-152 56-89 (271)
216 cd06273 PBP1_GntR_like_1 This 25.1 1.8E+02 0.004 25.6 5.7 35 121-155 177-217 (268)
217 PRK05637 anthranilate synthase 25.1 1.8E+02 0.0038 26.6 5.7 72 77-152 3-80 (208)
218 TIGR03254 oxalate_oxc oxalyl-C 25.0 4E+02 0.0087 27.5 8.9 72 61-134 195-277 (554)
219 PRK06895 putative anthranilate 25.0 2E+02 0.0044 25.3 6.0 71 76-152 2-79 (190)
220 PRK08527 acetolactate synthase 25.0 2.7E+02 0.0058 28.9 7.7 73 60-134 191-281 (563)
221 PRK09939 putative oxidoreducta 24.7 3.4E+02 0.0073 29.9 8.6 130 18-154 91-245 (759)
222 COG3914 Spy Predicted O-linked 24.7 2.8E+02 0.006 30.0 7.6 103 41-152 431-538 (620)
223 COG3535 Uncharacterized conser 24.7 67 0.0014 32.2 3.0 38 121-170 294-331 (357)
224 PLN02470 acetolactate synthase 24.7 2.8E+02 0.0062 28.9 7.8 72 61-134 204-291 (585)
225 TIGR02137 HSK-PSP phosphoserin 24.4 1.2E+02 0.0027 27.3 4.5 92 65-169 73-171 (203)
226 COG0449 GlmS Glucosamine 6-pho 24.3 9.3E+02 0.02 26.1 11.8 117 72-193 452-583 (597)
227 cd03820 GT1_amsD_like This fam 24.2 3.4E+02 0.0074 23.8 7.3 89 59-151 193-282 (348)
228 PRK13143 hisH imidazole glycer 24.1 1.9E+02 0.0042 25.8 5.7 20 135-154 61-80 (200)
229 PRK13170 hisH imidazole glycer 24.1 2E+02 0.0044 25.7 5.8 12 141-152 66-77 (196)
230 PRK14987 gluconate operon tran 24.0 1.3E+02 0.0027 28.1 4.6 35 121-155 118-152 (331)
231 cd06287 PBP1_LacI_like_8 Ligan 23.9 2.4E+02 0.0052 25.7 6.4 30 122-151 56-85 (269)
232 cd06314 PBP1_tmGBP Periplasmic 23.5 2.1E+02 0.0046 25.5 5.9 33 121-155 54-88 (271)
233 PRK13818 ribosome-binding fact 23.5 88 0.0019 26.5 3.1 64 147-212 32-97 (121)
234 PRK15427 colanic acid biosynth 23.1 2.4E+02 0.0053 27.8 6.7 102 56-161 234-343 (406)
235 COG1817 Uncharacterized protei 22.9 2E+02 0.0044 28.9 5.9 91 61-156 12-115 (346)
236 cd06334 PBP1_ABC_ligand_bindin 22.8 6.4E+02 0.014 24.1 9.4 73 75-147 140-221 (351)
237 PRK05718 keto-hydroxyglutarate 22.8 2.9E+02 0.0063 25.5 6.7 81 64-149 28-112 (212)
238 PF01075 Glyco_transf_9: Glyco 22.7 1.7E+02 0.0038 26.1 5.1 81 66-154 127-211 (247)
239 TIGR01481 ccpA catabolite cont 22.3 2.1E+02 0.0046 26.4 5.8 34 121-155 114-147 (329)
240 COG0800 Eda 2-keto-3-deoxy-6-p 22.1 2.3E+02 0.005 26.6 5.8 87 63-154 25-115 (211)
241 cd06323 PBP1_ribose_binding Pe 22.0 3.5E+02 0.0076 23.7 6.9 58 122-179 181-248 (268)
242 TIGR02193 heptsyl_trn_I lipopo 21.9 4.4E+02 0.0094 24.7 7.9 33 120-156 252-284 (319)
243 PRK11018 hypothetical protein; 21.9 1.9E+02 0.0042 22.2 4.6 38 67-104 27-64 (78)
244 cd03811 GT1_WabH_like This fam 21.8 3.4E+02 0.0073 23.9 6.7 73 75-151 220-293 (353)
245 cd01542 PBP1_TreR_like Ligand- 21.8 1.5E+02 0.0032 26.1 4.4 31 121-151 54-84 (259)
246 PF01497 Peripla_BP_2: Peripla 21.7 1.1E+02 0.0023 27.0 3.5 37 120-156 58-94 (238)
247 cd06271 PBP1_AglR_RafR_like Li 21.6 2.4E+02 0.0052 24.7 5.7 34 121-154 180-219 (268)
248 PF00117 GATase: Glutamine ami 21.5 96 0.0021 26.9 3.1 32 121-152 41-79 (192)
249 PF00534 Glycos_transf_1: Glyc 21.4 97 0.0021 25.7 3.0 94 57-152 28-123 (172)
250 cd03807 GT1_WbnK_like This fam 21.3 3.4E+02 0.0074 24.1 6.7 31 120-150 266-297 (365)
251 PRK07525 sulfoacetaldehyde ace 21.2 3.3E+02 0.007 28.5 7.4 72 61-134 189-278 (588)
252 cd06323 PBP1_ribose_binding Pe 21.1 2.6E+02 0.0055 24.6 5.8 32 122-153 55-88 (268)
253 cd04962 GT1_like_5 This family 21.0 4E+02 0.0088 24.6 7.4 72 75-150 227-299 (371)
254 cd06298 PBP1_CcpA_like Ligand- 20.9 2.3E+02 0.0051 24.9 5.6 32 123-154 178-215 (268)
255 PRK06725 acetolactate synthase 20.8 3.4E+02 0.0074 28.4 7.4 72 61-134 203-292 (570)
256 cd01545 PBP1_SalR Ligand-bindi 20.7 1.7E+02 0.0036 25.9 4.6 34 122-156 56-90 (270)
257 cd01147 HemV-2 Metal binding p 20.6 1.2E+02 0.0026 27.3 3.7 41 113-153 65-106 (262)
258 cd03813 GT1_like_3 This family 20.3 3.9E+02 0.0085 26.9 7.6 87 59-150 308-399 (475)
259 PRK07586 hypothetical protein; 20.3 2.6E+02 0.0057 28.5 6.4 70 61-132 186-272 (514)
260 TIGR01441 GPR GPR endopeptidas 20.2 74 0.0016 32.1 2.3 57 121-186 173-255 (358)
261 PF07085 DRTGG: DRTGG domain; 20.2 81 0.0018 25.1 2.2 29 123-151 62-91 (105)
262 PRK14089 ipid-A-disaccharide s 20.1 1E+02 0.0022 30.6 3.2 32 121-152 75-109 (347)
263 cd01635 Glycosyltransferase_GT 20.1 4.1E+02 0.0088 22.0 6.6 93 58-152 118-212 (229)
264 TIGR01135 glmS glucosamine--fr 20.0 1E+03 0.022 25.0 12.0 115 74-193 462-593 (607)
265 cd06320 PBP1_allose_binding Pe 20.0 3.3E+02 0.0072 24.2 6.4 120 63-182 109-253 (275)
No 1
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=2.3e-85 Score=608.72 Aligned_cols=218 Identities=63% Similarity=1.064 Sum_probs=212.2
Q ss_pred CCccCCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchh
Q 021262 8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYG 87 (315)
Q Consensus 8 ~~~~l~~k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~ 87 (315)
++++|+++++++++||++|+||||++||++|++||||+|.||+|||||+|||++|++|+++|++|+++++|||||||+++
T Consensus 4 ~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~ 83 (249)
T PTZ00254 4 GPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYG 83 (249)
T ss_pred CcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHH
Confidence 57899999999999999999999999999999999998768999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecC
Q 021262 88 QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (315)
Q Consensus 88 q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~ 167 (315)
+++|+|||++||++||+|||+||+||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||||||
T Consensus 84 ~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~ 163 (249)
T PTZ00254 84 QRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPC 163 (249)
T ss_pred HHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhhhhHhhh
Q 021262 168 NNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAI 225 (315)
Q Consensus 168 Nnds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~~ 225 (315)
||||.+||+||||+|+|+|+++||+++|+++|+|||||||||||||+|++|+++++.+
T Consensus 164 Ndds~~SI~li~~lLar~Vl~~rG~~~r~~~~~v~~d~f~~r~~~~~~~~~~~~~~~~ 221 (249)
T PTZ00254 164 NNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETA 221 (249)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhCccccCCCCCcCceeccccChhhhhhHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999888776443
No 2
>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-81 Score=572.58 Aligned_cols=245 Identities=55% Similarity=0.932 Sum_probs=232.5
Q ss_pred CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccC
Q 021262 34 CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (315)
Q Consensus 34 ~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLT 113 (315)
++++|++||||+|+||||||||++|||||.+|+|.|++|+|+++|.++|+|++|||+|+|||++||+++|+|||+||+||
T Consensus 1 ~~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~aienp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 1 LNFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CCcccccccccccCCceEEeeccccHHHHHHHHHHHhhccCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcCC
Q 021262 114 NQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193 (315)
Q Consensus 114 N~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~i 193 (315)
||+|.+|+|||||||+|||.|||+|+|++|+|+|||+||||||++++|||+|||||||.|||+++||+|+|+||+|||++
T Consensus 81 n~iq~~f~epr~lvvtdpr~d~q~~~E~s~~n~p~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrgti 160 (254)
T KOG0830|consen 81 NQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRGTI 160 (254)
T ss_pred hHHHHhhcCCceeeecCcccccchhhhhhhcCCceEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcccccccccccCcccccchhhhhHhhhhhhhhccc--cCCCCCCCCCCcccCCCCCCCCCC--CCCCCC--CCC
Q 021262 194 RP-GHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYN--TNLTSGDQWPSQIADGGWAGGEVQ--KPIPGV--PYF 266 (315)
Q Consensus 194 ~~-~~~w~v~~dl~fyrdpee~e~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~w 266 (315)
++ .++|++||||||||||||+|++||+. +.++++.++|+ |+++++++..+++++++|++++++ +|++++ +||
T Consensus 161 s~~~~~~~~m~dl~FyrDpeE~e~eeqAa-~~ka~t~eefqge~ta~a~eftatq~~vadw~e~~q~ps~~~q~~~ted~ 239 (254)
T KOG0830|consen 161 SRLQHPWEVMPDLYFYRDPEETEKEEQAA-AEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGMQVPSVPIQQFPTEDW 239 (254)
T ss_pred hhhccchhhcCCcccccCccccchhhhcc-cchhhcccccccccccCCccccccCccccccccccccccccccccccccc
Confidence 97 99999999999999999999955544 46688888886 889999999999999999999887 467776 599
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 021262 267 PEAPAATVPLGGDGWDAVP 285 (315)
Q Consensus 267 ~~~~~~~~~~~~~~w~~a~ 285 (315)
+++|+ +++|.+++
T Consensus 240 sa~pa------~~~~~~a~ 252 (254)
T KOG0830|consen 240 SAQPA------TEDWQAAC 252 (254)
T ss_pred ccccc------cccccccC
Confidence 99988 88888774
No 3
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=1.6e-74 Score=521.01 Aligned_cols=195 Identities=56% Similarity=0.972 Sum_probs=192.0
Q ss_pred cHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHH
Q 021262 15 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKF 94 (315)
Q Consensus 15 k~~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kf 94 (315)
+++++++||++|+||||++|||+|++||||+|+||+|||||+|||++|++|+++|.++. +++|||||||++++++|++|
T Consensus 2 ~~~~i~~ll~agvH~Gh~~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~ 80 (196)
T TIGR01012 2 KLVPVDKYLAAGVHIGTQNKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKF 80 (196)
T ss_pred ccccHHHHHhCCeecCCCcCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHH
Confidence 56799999999999999999999999999999789999999999999999999999998 99999999999999999999
Q ss_pred HHHhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcch
Q 021262 95 AKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (315)
Q Consensus 95 A~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~S 174 (315)
|++||++||++||+||+||||.+..|++||+|||+||+.|++||+||+++||||||||||||||++|||||||||||.+|
T Consensus 81 A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~S 160 (196)
T TIGR01012 81 AKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHS 160 (196)
T ss_pred HHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccccccC
Q 021262 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 210 (315)
Q Consensus 175 I~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrd 210 (315)
|.|+||+|+|+|+++||+++++++|+||||+|||||
T Consensus 161 i~li~~lla~ail~~~g~~~~~~~~~~~~d~f~~~~ 196 (196)
T TIGR01012 161 LALIYWLLAREILRMRGTISRDQDWDVMYEEFFYRD 196 (196)
T ss_pred HHHHHHHHHHHHHHhhCccCCCCCCccChhhhcccC
Confidence 999999999999999999999999999999999997
No 4
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=4.3e-70 Score=494.91 Aligned_cols=193 Identities=41% Similarity=0.720 Sum_probs=189.7
Q ss_pred HHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 021262 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~ 96 (315)
.++++||++|+||||+.+||+|++||||+|+||+|||||+|||++|++|+++|..+ ++++|||||||++++++|++||+
T Consensus 10 v~i~~ll~ag~H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~ 88 (204)
T PRK04020 10 VPLEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAE 88 (204)
T ss_pred eeHHHHHhCCeEcCCCcCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHH
Confidence 67999999999999999999999999999988999999999999999999999998 78999999999999999999999
Q ss_pred HhCCccccCCccCCccCccccccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHH
Q 021262 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (315)
Q Consensus 97 ~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~ 176 (315)
++|++||++||+||+|||++..+|++|++|||+||+.|++||+||+++||||||||||||||++|||||||||||.+||+
T Consensus 89 ~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~ 168 (204)
T PRK04020 89 VVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALA 168 (204)
T ss_pred HhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccccC
Q 021262 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 210 (315)
Q Consensus 177 li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrd 210 (315)
|++|+|+++|+++||+++++++|+||+|+|++|.
T Consensus 169 li~~ll~~aIl~~kg~~~~~~~~~v~~~~f~~~~ 202 (204)
T PRK04020 169 LVYWLLAREILRERGEIKPDEDLPVPVEDFETKL 202 (204)
T ss_pred HHHHHHHHHHHHhhCccCCCCCCCcCHHHHhhhh
Confidence 9999999999999999999999999999999885
No 5
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-63 Score=455.77 Aligned_cols=188 Identities=33% Similarity=0.506 Sum_probs=171.9
Q ss_pred HHHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHH
Q 021262 16 EADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVL 92 (315)
Q Consensus 16 ~~~i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~ 92 (315)
.+++++||+||+||||+ +|||+|++|||+.| ||||||||.||+++|..|+++|..+ +++++|||||||.|++++|+
T Consensus 3 ~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~R-ngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~ 81 (252)
T COG0052 3 VVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVK 81 (252)
T ss_pred cCCHHHHHHcCccccccccccCCcccccceeec-CCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHH
Confidence 36889999999999974 59999999999999 6999999999999999999999998 68999999999999999999
Q ss_pred HHHHHhCCccccCCccCCccCcccccc-----c----------------------------------------cCCceEE
Q 021262 93 KFAKYTHAHAIAGRHTPGTFTNQMQTS-----F----------------------------------------NEPRLLI 127 (315)
Q Consensus 93 kfA~~tga~~i~grw~pGtLTN~~~~~-----f----------------------------------------~eP~lLI 127 (315)
+||++||++||++||+|||||||.+++ + +.||+||
T Consensus 82 ~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ 161 (252)
T COG0052 82 EFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF 161 (252)
T ss_pred HHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE
Confidence 999999999999999999999987632 1 3499999
Q ss_pred EeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 021262 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVD 204 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~d 204 (315)
|+||+.|++||+||+++||||||||||||+|+.|||+||||||+.+||.|++|+|+++|+++|+....+.-|+++++
T Consensus 162 ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~~~~~~~~~~~~~ 238 (252)
T COG0052 162 VIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGALDEEEAAIEED 238 (252)
T ss_pred EeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhccccchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999986543222333333
No 6
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.7e-57 Score=437.17 Aligned_cols=173 Identities=27% Similarity=0.374 Sum_probs=164.5
Q ss_pred HHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHH
Q 021262 19 IQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFA 95 (315)
Q Consensus 19 i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA 95 (315)
+++||++|+||||+ +|||+|++||||.|+ |+|||||.+|+.+|++|+++|..+ +++++|||||||++++++|+++|
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~-gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A 79 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRN-NIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAA 79 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceecccC-CcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 46899999999985 599999999999996 999999999999999999999987 89999999999999999999999
Q ss_pred HHhCCccccCCccCCccCcccccc--------------------c--------------------------cCCceEEEe
Q 021262 96 KYTHAHAIAGRHTPGTFTNQMQTS--------------------F--------------------------NEPRLLILT 129 (315)
Q Consensus 96 ~~tga~~i~grw~pGtLTN~~~~~--------------------f--------------------------~eP~lLIV~ 129 (315)
++||++||++||+|||||||.+.+ | ++||+|||+
T Consensus 80 ~~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~ 159 (326)
T PRK12311 80 KRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVI 159 (326)
T ss_pred HHhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEe
Confidence 999999999999999999998531 1 389999999
Q ss_pred CCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcC
Q 021262 130 DPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 130 DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~ 192 (315)
||+.|++||+||+++||||||||||||||++|||||||||||.+||.|+|++|+++|++++..
T Consensus 160 d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~~ 222 (326)
T PRK12311 160 DTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGISR 222 (326)
T ss_pred CCccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 7
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=6.6e-57 Score=421.67 Aligned_cols=176 Identities=30% Similarity=0.401 Sum_probs=167.6
Q ss_pred HHHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHH
Q 021262 16 EADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVL 92 (315)
Q Consensus 16 ~~~i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~ 92 (315)
..++++||++|+||||+ +|||+|++||||.| +|+|||||.+|+.+|++|+++|..+ +++++|||||||++.+++|+
T Consensus 3 ~~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r-~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~ 81 (258)
T PRK05299 3 VVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGER-NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIA 81 (258)
T ss_pred cCCHHHHHhcCcccccccCcCCCccccceeccc-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHH
Confidence 46799999999999985 49999999999999 5999999999999999999999986 89999999999999999999
Q ss_pred HHHHHhCCccccCCccCCccCcccccc-----------------c-----------------------------cCCceE
Q 021262 93 KFAKYTHAHAIAGRHTPGTFTNQMQTS-----------------F-----------------------------NEPRLL 126 (315)
Q Consensus 93 kfA~~tga~~i~grw~pGtLTN~~~~~-----------------f-----------------------------~eP~lL 126 (315)
++|++||++||++||+||+||||.+.+ | ++||+|
T Consensus 82 ~~A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~i 161 (258)
T PRK05299 82 EEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDAL 161 (258)
T ss_pred HHHHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEE
Confidence 999999999999999999999997621 1 589999
Q ss_pred EEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcC
Q 021262 127 ILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 127 IV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~ 192 (315)
||+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|+++++.
T Consensus 162 ii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~~ 227 (258)
T PRK05299 162 FVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQG 227 (258)
T ss_pred EEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999984
No 8
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=3.6e-56 Score=409.26 Aligned_cols=174 Identities=29% Similarity=0.414 Sum_probs=165.4
Q ss_pred HHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021262 17 ADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~k 93 (315)
.++++||++|+||||+ +|||+|++||||+| +|+|||||.+|+.+|++|+++|..+ +++++||||+||++.+++|++
T Consensus 2 ~~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r-~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~ 80 (225)
T TIGR01011 2 VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKE 80 (225)
T ss_pred cCHHHHHHcCcccccccCcCCcccccceeeee-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 3689999999999984 59999999999999 5999999999999999999999986 899999999999999999999
Q ss_pred HHHHhCCccccCCccCCccCcccccc-----------------c-----------------------------cCCceEE
Q 021262 94 FAKYTHAHAIAGRHTPGTFTNQMQTS-----------------F-----------------------------NEPRLLI 127 (315)
Q Consensus 94 fA~~tga~~i~grw~pGtLTN~~~~~-----------------f-----------------------------~eP~lLI 127 (315)
+|++||++||++||+||+||||.+.+ | ++||+||
T Consensus 81 ~a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vi 160 (225)
T TIGR01011 81 EAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLF 160 (225)
T ss_pred HHHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEE
Confidence 99999999999999999999997631 1 5899999
Q ss_pred EeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhc
Q 021262 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg 191 (315)
|+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|+++++
T Consensus 161 i~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~~ 224 (225)
T TIGR01011 161 VIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ 224 (225)
T ss_pred EeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999975
No 9
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=9.4e-55 Score=401.04 Aligned_cols=177 Identities=26% Similarity=0.363 Sum_probs=167.9
Q ss_pred CCcHHHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHH
Q 021262 13 SQKEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQR 89 (315)
Q Consensus 13 ~~k~~~i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~ 89 (315)
.|...++++||++|+||||+ +|||+|++||||+| ||+|||||.+|+.+|++|+++|..+ +++++||||+||++.++
T Consensus 4 ~~~~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r-~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~ 82 (230)
T CHL00067 4 RMWNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAER-NGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAAD 82 (230)
T ss_pred cccccCHHHHHhcCeEeccCcCcCCCchhhhhhccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHH
Confidence 34557899999999999986 69999999999999 5999999999999999999999997 89999999999999999
Q ss_pred HHHHHHHHhCCccccCCccCCccCcccccc---------------------------------------c-------cCC
Q 021262 90 AVLKFAKYTHAHAIAGRHTPGTFTNQMQTS---------------------------------------F-------NEP 123 (315)
Q Consensus 90 aV~kfA~~tga~~i~grw~pGtLTN~~~~~---------------------------------------f-------~eP 123 (315)
+|+++|+++|++||++||+||+||||.+.+ | ++|
T Consensus 83 ~v~~~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P 162 (230)
T CHL00067 83 LVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLP 162 (230)
T ss_pred HHHHHHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCC
Confidence 999999999999999999999999998631 1 689
Q ss_pred ceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhh
Q 021262 124 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (315)
Q Consensus 124 ~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~r 190 (315)
++|||+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|++++
T Consensus 163 ~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 163 DIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred CEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 10
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=1.9e-54 Score=388.59 Aligned_cols=166 Identities=43% Similarity=0.666 Sum_probs=159.7
Q ss_pred HHHcCceecccc--CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHh
Q 021262 22 MLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (315)
Q Consensus 22 LLaAgvHlG~~~--~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~t 98 (315)
||++|+|+||+. |||+|++||||+| ||+|||||++|+.+|++|+++|..+ .++++||||+||++.+++|+++|+++
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r-~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~ 79 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGER-NGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT 79 (193)
T ss_pred CCccceEeCCCcCCCCccchhheeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 689999999865 7999999999999 6999999999999999999999998 78999999999999999999999999
Q ss_pred CCccccCCccCCccCccccc------------------------cccCCceEEEeCCCCCchhHHHhhhcCCCceeeccC
Q 021262 99 HAHAIAGRHTPGTFTNQMQT------------------------SFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 99 ga~~i~grw~pGtLTN~~~~------------------------~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (315)
|++|+++||+||+||||.+. .+++||+|||+||..|+++|+||+++||||||||||
T Consensus 80 ~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 80 GSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred CCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 99999999999999999876 468999999999999999999999999999999999
Q ss_pred CCCCCcceEEecCCCCCcchHHHHHHHHHHHHHH
Q 021262 155 DSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 188 (315)
Q Consensus 155 ds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~ 188 (315)
||++++|||||||||||.+|+.|++++|+++|++
T Consensus 160 n~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 160 NCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred CCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999974
No 11
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=2.5e-51 Score=373.12 Aligned_cols=168 Identities=39% Similarity=0.579 Sum_probs=157.1
Q ss_pred HHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHh
Q 021262 22 MLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (315)
Q Consensus 22 LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~t 98 (315)
||++|+||||+ +|||+|++||||+| +|+|||||++|+++|++|+++|..+ +++++||||+|+++.+++|+++|+++
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r-~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~ 79 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKR-NGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRT 79 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEE-TTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHH
T ss_pred CcccceecCCCcCCCCCCcccceeccc-CceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHh
Confidence 78999999997 59999999999999 5999999999999999999999998 89999999999999999999999999
Q ss_pred CCccccCCccCCccCcccccc---------------------------------c-------cCCceEEEeCCCCCchhH
Q 021262 99 HAHAIAGRHTPGTFTNQMQTS---------------------------------F-------NEPRLLILTDPRTDHQPI 138 (315)
Q Consensus 99 ga~~i~grw~pGtLTN~~~~~---------------------------------f-------~eP~lLIV~DP~~d~qaI 138 (315)
|++|+++||+||+||||.+.. | +.|++|||+||..|+++|
T Consensus 80 ~~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i 159 (211)
T PF00318_consen 80 GSFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFKLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAI 159 (211)
T ss_dssp TCEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHH
T ss_pred CCCccCceecCcccCcHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhH
Confidence 999999999999999998652 1 469999999999999999
Q ss_pred HHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhh
Q 021262 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (315)
Q Consensus 139 ~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~r 190 (315)
+||.++||||||||||||++++|||||||||||..||.|++++|+++|+++|
T Consensus 160 ~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 160 REANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp HHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999875
No 12
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-48 Score=351.59 Aligned_cols=175 Identities=26% Similarity=0.383 Sum_probs=165.8
Q ss_pred HHHHHHHHcCceecccc--CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021262 17 ADIQMMLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~~--~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~IlfVstr~~~q~aV~k 93 (315)
.+|++|+.+|+||||+. ||+.|++||||+|. |||||||+||..+|++|++|++.+ ..+|.||||+||+...+.|.+
T Consensus 48 ~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~-Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~ 126 (251)
T KOG0832|consen 48 ISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRL-GIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVER 126 (251)
T ss_pred ccHHHHHhccccccccccccCcccchhhccccc-CcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHH
Confidence 78999999999999865 89999999999996 999999999999999999999998 788999999999999999999
Q ss_pred HHHHhCCccccCCccCCccCcccccc---------------c---cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCC
Q 021262 94 FAKYTHAHAIAGRHTPGTFTNQMQTS---------------F---NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 94 fA~~tga~~i~grw~pGtLTN~~~~~---------------f---~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
.|+++|+++++.+|.||+|||+.+.. | ..||+|||+|+.++|.||.||.|++||||||+|||
T Consensus 127 aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 127 AARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred HHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 99999999999999999999997531 1 46899999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCCcchHHHHHHHHHHHHHHhhcC
Q 021262 156 SPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (315)
Q Consensus 156 s~~~~VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~ 192 (315)
|+|++|+||||+||||..|+.|++.+|.++|.+++..
T Consensus 207 ~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~~ 243 (251)
T KOG0832|consen 207 CNPELITYPVPANDDSPASVEFILNLLKRAIARGKQK 243 (251)
T ss_pred CCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754
No 13
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.18 E-value=0.062 Score=51.89 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCc-------cCc----c--------
Q 021262 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-------FTN----Q-------- 115 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGt-------LTN----~-------- 115 (315)
....+.|..++..+.. ++++++|++++....+.-++...+.....+.+...-+.|. +.+ -
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~ 117 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGA 117 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHH
Confidence 3445667777777765 6899999999988766544554333332222211111111 111 0
Q ss_pred ---ccccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCC---C--------CCcchH
Q 021262 116 ---MQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN---N--------KGKHSI 175 (315)
Q Consensus 116 ---~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N---n--------ds~~SI 175 (315)
....+.+-|++|++...-+ ..+++.|...|.+||+|+.. ++++. ..|+.|... . ++..|.
T Consensus 118 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~taq 197 (296)
T PRK12570 118 QDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVLTGSTRLKSGTAQ 197 (296)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEeeCcCCccccccchHHHHHHH
Confidence 0012456788888875554 36789999999999999865 44443 478877521 1 345688
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 021262 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206 (315)
Q Consensus 176 ~li~~lLaraVl~~rg~i~~~~~w~v~~dl~ 206 (315)
.+++.+|+..+....|+..++ .|+|+-
T Consensus 198 k~vLd~L~t~~~~r~Gk~~~n----~mvd~~ 224 (296)
T PRK12570 198 KMVLNMLSTASMIRLGKSYQN----LMVDVK 224 (296)
T ss_pred HHHHHHHHHHHHHhcchhhcC----eEEEee
Confidence 889999999999888987664 488864
No 14
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=95.98 E-value=0.048 Score=51.41 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCcc-----ccCCccCCcc------Cccc-------
Q 021262 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-----IAGRHTPGTF------TNQM------- 116 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~-----i~grw~pGtL------TN~~------- 116 (315)
.+..+.|..++..+.. ++++++|++++....+.=+++..++...-+- +.+-..+|.- -|..
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~ 108 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGA 108 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHH
Confidence 3445667777777775 5899999999988776655543333322111 1111222211 1111
Q ss_pred ----cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCC-----------CCcchH
Q 021262 117 ----QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN-----------KGKHSI 175 (315)
Q Consensus 117 ----~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn-----------ds~~SI 175 (315)
...+.+-|++|++.-.-. ..+++.|++.|+|||+|+.. ++++. ..|+.|-... ++..+.
T Consensus 109 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E~~~~st~~~s~~aq 188 (257)
T cd05007 109 ADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQ 188 (257)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCccccCccccccHHHH
Confidence 122466788887764433 56889999999999999754 45543 3677775432 244567
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 021262 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206 (315)
Q Consensus 176 ~li~~lLaraVl~~rg~i~~~~~w~v~~dl~ 206 (315)
.+++.+|.-.+....|++-.. .|+|+-
T Consensus 189 k~vLn~L~t~~~~~~g~v~~n----~mvd~~ 215 (257)
T cd05007 189 KLALNMLSTAVMIRLGKVYGN----LMVDVR 215 (257)
T ss_pred HHHHHHHHHHHHHHcchHHHH----HHHHhh
Confidence 888999998888888876543 477764
No 15
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.81 E-value=0.15 Score=49.31 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCcc-----------Ccc-------
Q 021262 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF-----------TNQ------- 115 (315)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtL-----------TN~------- 115 (315)
+.+..+.|..++..+.. +.++++|.+++....+.-+++.+++...-+-+....+.|.+ .|.
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~ 120 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELG 120 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHH
Confidence 55666777777777765 58999999999987776665554443322211111122211 110
Q ss_pred ---c-cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeecc-CCCCCC-cceEEecCCC-----------CCcch
Q 021262 116 ---M-QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCD-TDSPMR-YVDIGIPANN-----------KGKHS 174 (315)
Q Consensus 116 ---~-~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~D-Tds~~~-~VD~pIP~Nn-----------ds~~S 174 (315)
. ...+..-|++|++...-. ..+++.|+..|.+||+|++ .++++. +.|+.|.... ++..+
T Consensus 121 ~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~ta 200 (299)
T PRK05441 121 AADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKAGTA 200 (299)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCccccccccccchhH
Confidence 0 122566788888864333 5688999999999999996 445543 4777775442 24457
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 021262 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206 (315)
Q Consensus 175 I~li~~lLaraVl~~rg~i~~~~~w~v~~dl~ 206 (315)
..+++.+|+..+....|+.-. ..|+|+-
T Consensus 201 qk~iLn~lst~~~~~~gkv~~----n~mvd~~ 228 (299)
T PRK05441 201 QKLVLNMISTGVMIRLGKVYG----NLMVDVK 228 (299)
T ss_pred HHHHHHHHHHHHHHHccHHHH----HHHHHhc
Confidence 788899999988888887533 2366653
No 16
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.13 E-value=0.21 Score=48.11 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHH---HHHhCCcc--ccCCccCCc---cCccc---------
Q 021262 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKF---AKYTHAHA--IAGRHTPGT---FTNQM--------- 116 (315)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kf---A~~tga~~--i~grw~pGt---LTN~~--------- 116 (315)
+....+.+..++..+.. ++++++|.++|....+.=+++.. .-+.|..+ +.+-..+|- +++..
T Consensus 36 v~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~ 115 (291)
T TIGR00274 36 IESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAG 115 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHH
Confidence 44556677778877765 68999999998876554233332 22234322 112122331 11111
Q ss_pred -----cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeecc-CCCCC-CcceEEecCC-----------CCCcch
Q 021262 117 -----QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCD-TDSPM-RYVDIGIPAN-----------NKGKHS 174 (315)
Q Consensus 117 -----~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~D-Tds~~-~~VD~pIP~N-----------nds~~S 174 (315)
...+.+=|++|++...-+ ..+++.|++.|+++|+|+. .++++ ++.|+.|... -++.-+
T Consensus 116 ~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~a 195 (291)
T TIGR00274 116 ANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTA 195 (291)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHH
Confidence 112566788888765444 4577899999999999975 34443 3577777542 134556
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 021262 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206 (315)
Q Consensus 175 I~li~~lLaraVl~~rg~i~~~~~w~v~~dl~ 206 (315)
..+++.+|+..+....|+.... .|+|+-
T Consensus 196 qk~iLd~L~t~~~~~~gk~~~n----~mvd~~ 223 (291)
T TIGR00274 196 QKMVLNMLSTASMIKLGKVYEN----LMVDVQ 223 (291)
T ss_pred HHHHHHHHHHHHHHhcchhhcC----eEEeee
Confidence 6778899999888888887654 488864
No 17
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=93.85 E-value=1.4 Score=38.53 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHH--HHHHHHhhCCCcEEEEccCchhHHHHHHHHHHh---CCccccCCccCCccCccccccccCCceEEE
Q 021262 54 NLGKTWEKLQMA--ARVIVAIENPGDIIVQSARPYGQRAVLKFAKYT---HAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128 (315)
Q Consensus 54 NL~kT~ekL~~A--a~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~t---ga~~i~grw~pGtLTN~~~~~f~eP~lLIV 128 (315)
||.+|.+.|... -+++..|.+.++|.|+|.+... -....++.+. |-..+ ..+..+. ..+.+-|++|+
T Consensus 10 ~l~~t~~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~-~~A~~~~~~l~~~g~~~~---~~~~~~~----~~~~~~D~vI~ 81 (179)
T cd05005 10 EIENVADKIDEEELDKLISAILNAKRIFVYGAGRSG-LVAKAFAMRLMHLGLNVY---VVGETTT----PAIGPGDLLIA 81 (179)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCeEEEEecChhH-HHHHHHHHHHHhCCCeEE---EeCCCCC----CCCCCCCEEEE
Confidence 455555543221 1122234555789998877432 1222233322 32211 1122221 23456688888
Q ss_pred eCCCCC----chhHHHhhhcCCCceeeccCC-CCCC-cceE--EecCCC
Q 021262 129 TDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-YVDI--GIPANN 169 (315)
Q Consensus 129 ~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~VD~--pIP~Nn 169 (315)
+..... ..+++.|+..|+|+|+|+|+. +++. +.|+ .+|++.
T Consensus 82 iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 82 ISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred EcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 874433 347788999999999999964 4442 3454 445543
No 18
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=93.71 E-value=1.7 Score=39.16 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHh---------CCccccCCccCC-ccCc------------
Q 021262 58 TWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT---------HAHAIAGRHTPG-TFTN------------ 114 (315)
Q Consensus 58 T~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~t---------ga~~i~grw~pG-tLTN------------ 114 (315)
-.+.|.+|++.|.. +.++++|.++|...-+.- -..|+... |-..+.. ... .++.
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~-A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~ 102 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCD-AMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFS 102 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH-HHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHH
Confidence 34678899999986 589999999887654321 22333221 1111110 000 1110
Q ss_pred -cccccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCC
Q 021262 115 -QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN 169 (315)
Q Consensus 115 -~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn 169 (315)
+.....++-|++|++...-+ ..+++.|+..|+|||+|+.. ++++. +.|+.|..+.
T Consensus 103 ~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 103 RYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred HHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 11122467788888764433 45778899999999999975 55553 4677776665
No 19
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=93.55 E-value=2.9 Score=36.47 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchh---HHHHHHHHHHhCCc--cccCCccCC------ccCcc----------c
Q 021262 59 WEKLQMAARVIVA-IENPGDIIVQSARPYG---QRAVLKFAKYTHAH--AIAGRHTPG------TFTNQ----------M 116 (315)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~---q~aV~kfA~~tga~--~i~grw~pG------tLTN~----------~ 116 (315)
.+.|.+++..|.. +.+.++|.+++..... +....+|..+.+-. -+...+..+ ...|- .
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQV 95 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHH
Confidence 6778889998876 5777889888877432 22222333221100 001111111 01110 1
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCC
Q 021262 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (315)
Q Consensus 117 ~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (315)
...+++-|++|++.-.-+ ..+++.|+..|+|||+|++. ++++. +.|+.|...
T Consensus 96 ~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 96 EALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 123577799888875444 46778999999999999986 44443 456655443
No 20
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=93.39 E-value=1.6 Score=41.81 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhCC-CcEEEEccCchhHHHHHHHHHHh---CCccccCCccCCccCccccccccCCceEEEe
Q 021262 55 LGKTWEKLQMAARVIVA-IENP-GDIIVQSARPYGQRAVLKFAKYT---HAHAIAGRHTPGTFTNQMQTSFNEPRLLILT 129 (315)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~-~~IlfVstr~~~q~aV~kfA~~t---ga~~i~grw~pGtLTN~~~~~f~eP~lLIV~ 129 (315)
+++|...|..-+.-+.. +.+. ++|.|++....+ .+...|+.+. |-..+. ..+..+.......+.+-|++|++
T Consensus 25 ~~~t~~~~~~~l~~~~~~l~~a~~~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~d~~I~i 101 (326)
T PRK10892 25 LAELDQYINQDFTLACEKMFWCKGKVVVMGMGKSG-HIGRKMAATFASTGTPSFF--VHPGEAAHGDLGMVTPQDVVIAI 101 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHhH-HHHHHHHHHHhcCCceeEE--eChHHhhccccccCCCCCEEEEE
Confidence 55666655554444443 3343 678888877332 2333344432 322111 01111111112335567888888
Q ss_pred CCCCC----chhHHHhhhcCCCceeeccCC-CCCC-cceEEe--cC-------CC---CCcchHHHHHHHHHHHHHHhhc
Q 021262 130 DPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-YVDIGI--PA-------NN---KGKHSIGCLFWLLARMVLQMRG 191 (315)
Q Consensus 130 DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~VD~pI--P~-------Nn---ds~~SI~li~~lLaraVl~~rg 191 (315)
.-.-+ ..+++.|+..|+|||+|++.. |++. +-|+.| ++ +. +|.-+..++...|...+++.+|
T Consensus 102 S~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g 181 (326)
T PRK10892 102 SNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARG 181 (326)
T ss_pred eCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 74333 568899999999999999864 4443 455555 32 11 2222233444455555666665
Q ss_pred C
Q 021262 192 T 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 182 ~ 182 (326)
T PRK10892 182 F 182 (326)
T ss_pred C
Confidence 4
No 21
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=93.31 E-value=1.9 Score=37.59 Aligned_cols=89 Identities=19% Similarity=0.083 Sum_probs=48.8
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhcCCC
Q 021262 72 IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIP 147 (315)
Q Consensus 72 I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIP 147 (315)
+.+.++|.+++....+ -....|+.+....-+.-.+....+ .....+-|++|++.-.-. ..+++.|+..|+|
T Consensus 27 l~~a~~I~i~G~G~S~-~~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ 101 (179)
T TIGR03127 27 IIKAKRIFVAGAGRSG-LVGKAFAMRLMHLGFNVYVVGETT----TPSIKKGDLLIAISGSGETESLVTVAKKAKEIGAT 101 (179)
T ss_pred HHhCCEEEEEecCHHH-HHHHHHHHHHHhCCCeEEEeCCcc----cCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCe
Confidence 3455788888877432 222333333211111111222222 223566788888874333 3566778999999
Q ss_pred ceeeccCC-CCCC-cceEEe
Q 021262 148 TIAFCDTD-SPMR-YVDIGI 165 (315)
Q Consensus 148 tIAL~DTd-s~~~-~VD~pI 165 (315)
||+|++.. |++. +.|+.+
T Consensus 102 ii~IT~~~~s~la~~ad~~l 121 (179)
T TIGR03127 102 VAAITTNPESTLGKLADVVV 121 (179)
T ss_pred EEEEECCCCCchHHhCCEEE
Confidence 99999864 4443 355544
No 22
>PRK13938 phosphoheptose isomerase; Provisional
Probab=92.45 E-value=1.8 Score=39.42 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCC--------ccCC-ccC------------
Q 021262 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGR--------HTPG-TFT------------ 113 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~gr--------w~pG-tLT------------ 113 (315)
....+.+..++..+.. +.++++|++++....+.- -..|+.+...++.-+| ...+ .+|
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~-A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~ 103 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMCGNGGSAAD-AQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVF 103 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH-HHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHH
Confidence 3445566667776665 689999999887655433 2345544322211111 0111 111
Q ss_pred -ccccccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCC-CcceEEecCC
Q 021262 114 -NQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPAN 168 (315)
Q Consensus 114 -N~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~N 168 (315)
.+.....++-|++|++...-+ ..+++.|+..|+|||+|++. ++++ ++.|+.|...
T Consensus 104 ~~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~ 165 (196)
T PRK13938 104 ARALEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVP 165 (196)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeC
Confidence 222334578899998875543 46788999999999999974 4444 3456655433
No 23
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=92.16 E-value=0.62 Score=39.52 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcc---------cc-----------
Q 021262 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------MQ----------- 117 (315)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~---------~~----------- 117 (315)
.+.|..|++.|.. ++++++|.++++...+.-+..-+....|.+.+.....+...-+. ..
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLA 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHH
Confidence 6778899999987 58999999999886554433333333343333333333222221 10
Q ss_pred -ccccCCceEEEeCCCCC----chhHHHhhhcCCCceeec
Q 021262 118 -TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 118 -~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~ 152 (315)
..++.-|+||++...-+ ..++++|++.|.+||+|.
T Consensus 98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 11477888888865443 347789999999999984
No 24
>PRK02947 hypothetical protein; Provisional
Probab=91.39 E-value=2.9 Score=39.14 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCC-ccCCcc--------C---cc--------cc
Q 021262 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGR-HTPGTF--------T---NQ--------MQ 117 (315)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~gr-w~pGtL--------T---N~--------~~ 117 (315)
.+.|..|++.|.. +.+.++|.|++.+.... ....|..+.|......+ ..+..+ | +. ..
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~-vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHI-LAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDR 101 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHH
Confidence 3568889999886 58889999998875433 22333333321100000 111110 0 10 12
Q ss_pred ccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC
Q 021262 118 TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 118 ~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd 155 (315)
..+..-|++|++...-+ ..+++.|+..|+|+|+|++..
T Consensus 102 ~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 23567788888875544 346789999999999999874
No 25
>PRK13936 phosphoheptose isomerase; Provisional
Probab=91.15 E-value=3.3 Score=37.32 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchh---HHHHHHHHHHhCCccccCCccCCccC--------------cc------
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQ------ 115 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~---q~aV~kfA~~tga~~i~grw~pGtLT--------------N~------ 115 (315)
+.|..|+..++. +.+.++|.+++....+ +....+|..+.|. ..+|... |-
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~------~r~g~~~~~~~~~~~~~~~~~~d~~~~~~ 100 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFER------ERPSLPAIALTTDTSTLTAIANDYSYNEV 100 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCC------CCccceeEecCCcHHHHHHHhhcCCHHHH
Confidence 556678888776 4888999998776433 3333344333221 1222222 11
Q ss_pred ----ccccccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCCCc----ceEEecCCCC
Q 021262 116 ----MQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMRY----VDIGIPANNK 170 (315)
Q Consensus 116 ----~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~~----VD~pIP~Nnd 170 (315)
.....+.=|++|++...-+ ..+++.|+..|+|+|+|++.+ +++.- .|+.|....+
T Consensus 101 ~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~ 168 (197)
T PRK13936 101 FSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAE 168 (197)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCC
Confidence 0111246688777764433 336788999999999999844 44443 4555544443
No 26
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=90.70 E-value=2.4 Score=38.63 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCch---hHHHHHHHHH-----HhCCccccC---CccCCccCcc----------c
Q 021262 59 WEKLQMAARVIVA-IENPGDIIVQSARPY---GQRAVLKFAK-----YTHAHAIAG---RHTPGTFTNQ----------M 116 (315)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~IlfVstr~~---~q~aV~kfA~-----~tga~~i~g---rw~pGtLTN~----------~ 116 (315)
-+.|..|+..|.. +.+.++|+|++.... .+.+..+|.. +.|-..++- .-+-...+|- .
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 3678888888886 489999999987643 3333333321 111111100 0000011111 1
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCceeecc-CCCCCCcc----eEEecCCCCCc
Q 021262 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCD-TDSPMRYV----DIGIPANNKGK 172 (315)
Q Consensus 117 ~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~D-Tds~~~~V----D~pIP~Nnds~ 172 (315)
....++-|++|++...-+ ..+++.|+..|+|||+|+. .++++... |+.|--+.++.
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~ 168 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRS 168 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCch
Confidence 222477899888875544 3467888999999999996 34555432 55554444443
No 27
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=90.62 E-value=2.7 Score=39.18 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=36.2
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCCC-cceEEecC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-YVDIGIPA 167 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~VD~pIP~ 167 (315)
..+-|++|++.-..+ ..+++.|+..|++||+|+|.. +++. +.|+.|.+
T Consensus 173 ~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 173 LSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 467899888874443 357889999999999999974 4443 56777764
No 28
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=90.56 E-value=2.6 Score=39.17 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=35.3
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCC-cceEEecC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGIPA 167 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~-~VD~pIP~ 167 (315)
..+-|++|++.-... ..+++.|+..|++||+|++.++++. +.|+.|..
T Consensus 173 ~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 173 SSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 456688888864333 4477899999999999999777765 35776654
No 29
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=90.34 E-value=2.6 Score=44.14 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=67.1
Q ss_pred hhCCCcEEEEccCch--hHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021262 72 IENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (315)
Q Consensus 72 I~n~~~IlfVstr~~--~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~ln 145 (315)
+.+..+|.|+++... .......+..+.+...+. -..+..|.. ........+++|++...-+ ..+++.|+..|
T Consensus 286 l~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~g 363 (604)
T PRK00331 286 LKKIDRIYIVACGTSYHAGLVAKYLIESLAGIPVE-VEIASEFRY-RDPVLSPKTLVIAISQSGETADTLAALRLAKELG 363 (604)
T ss_pred HhcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCEE-EEehhhhhc-cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 455677888877643 223333344443322221 112233332 1223356688888864444 46788889999
Q ss_pred CCceeeccC-CCCC-CcceEEecCCCC---------CcchHHHHHHHHHHHHHHhhcCCC
Q 021262 146 IPTIAFCDT-DSPM-RYVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIR 194 (315)
Q Consensus 146 IPtIAL~DT-ds~~-~~VD~pIP~Nnd---------s~~SI~li~~lLaraVl~~rg~i~ 194 (315)
+|||+|++. +|++ +..|+.|+.+.. +..|.-+++.+|+-.+...+|.++
T Consensus 364 a~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~~~~~~g~~~ 423 (604)
T PRK00331 364 AKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGTLS 423 (604)
T ss_pred CCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999985 5555 357777776532 223333445555555555555543
No 30
>PRK15482 transcriptional regulator MurR; Provisional
Probab=89.40 E-value=3.8 Score=38.52 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=34.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCC-CcceEEecCCC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN 169 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~Nn 169 (315)
..+-|++|++.-... ..+++.|+..|++||+|+|.. +++ .+.|+.|.+..
T Consensus 180 ~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 180 LKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 456688888874333 457788999999999999975 444 35677665543
No 31
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.07 E-value=1.5 Score=35.08 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=50.2
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcc--ccccccCCceEEEeCCCCCchh----HHHhhhcCCCcee
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--MQTSFNEPRLLILTDPRTDHQP----IKEAALGNIPTIA 150 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~--~~~~f~eP~lLIV~DP~~d~qa----I~EAs~lnIPtIA 150 (315)
+||+|+.+.....-+++..+..|...+...=-+|.-.+. +......+|+|||+--..+|.+ -++|.+.|||++-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 489999977777778888888998775430012222222 3344678899888766666654 4678888999864
Q ss_pred e
Q 021262 151 F 151 (315)
Q Consensus 151 L 151 (315)
.
T Consensus 81 ~ 81 (97)
T PF10087_consen 81 S 81 (97)
T ss_pred E
Confidence 3
No 32
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=88.16 E-value=4.9 Score=32.28 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=34.9
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCC-CC-cceEEecCCCC
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSP-MR-YVDIGIPANNK 170 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~-~~-~VD~pIP~Nnd 170 (315)
.+-+++|++....+ .++++.|+..|+++|+|++...+ +. +.|+.|++...
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 45688888886555 34678899999999999986443 32 46666655443
No 33
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=88.15 E-value=9.5 Score=32.83 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=35.1
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN 169 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn 169 (315)
.++-|++|++...-+ ..+++.|+..|+|+|+|++. ++++. +.|+.|...+
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 366788888874433 45778899999999999974 55553 4566665444
No 34
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=88.09 E-value=6.6 Score=38.29 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchh--HHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC---
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--- 134 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~--q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d--- 134 (315)
+.|..++..+.. ++-.+|.|+++.... -...+.+..+.+...+. -..+.-|.+.....+.+-+++|++...-+
T Consensus 30 ~~l~~~~~~l~~-~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~-~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e 107 (340)
T PRK11382 30 PLVHAIVEEMVK-RDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY-AISGWEFCDNTPYRLDDRCAVIGVSDYGKTEE 107 (340)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE-EeccHHHHhcCCcCCCCCCEEEEEcCCCCCHH
Confidence 334444444332 235678887665332 22222222332221121 23444444333333445567777764333
Q ss_pred -chhHHHhhhcCCCceeeccC-CCCC-CcceEEecCCC
Q 021262 135 -HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN 169 (315)
Q Consensus 135 -~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nn 169 (315)
..+++.|+..|.+||+|++. +|++ +..|+.|+.+-
T Consensus 108 ~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~a 145 (340)
T PRK11382 108 VIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQA 145 (340)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCC
Confidence 45788899999999999876 6666 47899998884
No 35
>PRK13937 phosphoheptose isomerase; Provisional
Probab=88.06 E-value=12 Score=33.39 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHH---HHHHHHHhCCccccCCccCCccCcc--------------------
Q 021262 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRA---VLKFAKYTHAHAIAGRHTPGTFTNQ-------------------- 115 (315)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~a---V~kfA~~tga~~i~grw~pGtLTN~-------------------- 115 (315)
+.|..|+.-+.. +.+.++|.+++....+.-+ ...|..+.+- ..+|.....
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~------~r~g~~~~~~~~d~~~~~~~~~d~~~~~~ 95 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKK------ERPALPAIALTTDTSALTAIGNDYGFERV 95 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccC------CCCCcceEeccCcHHHHHHHhccCCHHHH
Confidence 567777777776 5899999999887654322 1222221110 112221111
Q ss_pred ----ccccccCCceEEEeCCCC-C---chhHHHhhhcCCCceeeccC-CCCCC-cceEEec
Q 021262 116 ----MQTSFNEPRLLILTDPRT-D---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIP 166 (315)
Q Consensus 116 ----~~~~f~eP~lLIV~DP~~-d---~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP 166 (315)
.....++-|++|++.-.- . ..+++.|+..|+|||+|++. ++++. +.|+.|.
T Consensus 96 ~~~~~~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~ 156 (188)
T PRK13937 96 FSRQVEALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLI 156 (188)
T ss_pred HHHHHHhhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 111236678888886333 2 45778999999999999975 55553 3555544
No 36
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=87.91 E-value=4.3 Score=42.88 Aligned_cols=49 Identities=8% Similarity=0.238 Sum_probs=36.1
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCC-cceEEecCC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGIPAN 168 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~-~VD~pIP~N 168 (315)
+.+-|++|++.-.-. ..+++.|+..|++||+|+|.+|++. +.|+.|+..
T Consensus 513 l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 513 LGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEcC
Confidence 456678777764333 4577888999999999999877763 578877764
No 37
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=87.74 E-value=3.7 Score=33.76 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=35.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCCC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNK 170 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nnd 170 (315)
..+-|++|++...-+ ..+++.|+..|+|+|+|++. ++++. ..|+.|.....
T Consensus 45 ~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 45 LTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 455688888764433 45778889999999999986 44443 46776666544
No 38
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=87.49 E-value=4.1 Score=37.46 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=45.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCC-CcceEEecCCC---------CCcch---HHHHHHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN---------KGKHS---IGCLFWL 181 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nn---------ds~~S---I~li~~l 181 (315)
+.+-|++|++...-+ ..+++.|+..|+|+|+|++. +|++ ++.|+.|.... ....| .-++.-+
T Consensus 45 ~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~ 124 (268)
T TIGR00393 45 VEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDA 124 (268)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHH
Confidence 456688888875433 45788999999999999986 4444 24666665421 11122 2233334
Q ss_pred HHHHHHHhhcCC
Q 021262 182 LARMVLQMRGTI 193 (315)
Q Consensus 182 LaraVl~~rg~i 193 (315)
|...+...+|..
T Consensus 125 l~~~~~~~~~~~ 136 (268)
T TIGR00393 125 LAVALMRARNFS 136 (268)
T ss_pred HHHHHHHHHCcC
Confidence 666666666653
No 39
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=87.10 E-value=3.5 Score=33.38 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCC-CC-CcceEEe
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDS-PM-RYVDIGI 165 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds-~~-~~VD~pI 165 (315)
..+-|++|++...-+ ..++++|+..|+++|+|++... ++ ++.|+.|
T Consensus 44 ~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l 95 (126)
T cd05008 44 LDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVL 95 (126)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEE
Confidence 456788777764333 4578899999999999999744 33 2355554
No 40
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=86.90 E-value=16 Score=30.16 Aligned_cols=117 Identities=19% Similarity=0.169 Sum_probs=68.9
Q ss_pred hhCCCcEEEEccCc---hhHHHHHHHHHHhC---CccccCCccCCccCccccccccCCceEEEeCCCCC-----chhHHH
Q 021262 72 IENPGDIIVQSARP---YGQRAVLKFAKYTH---AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKE 140 (315)
Q Consensus 72 I~n~~~IlfVstr~---~~q~aV~kfA~~tg---a~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-----~qaI~E 140 (315)
+.+-.+|.|+++.. ..+..-+||.+..+ ..+....|..|.+.+- .+-+++|++.+... ..+++.
T Consensus 10 ~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~-----~~~~~vi~is~~g~t~~~~~~~~~~ 84 (153)
T cd05009 10 LKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALV-----DEGTPVIFLAPEDRLEEKLESLIKE 84 (153)
T ss_pred HhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhc-----cCCCcEEEEecCChhHHHHHHHHHH
Confidence 34457788887754 24555666666543 2334455666655442 33456666664322 347788
Q ss_pred hhhcCCCceeeccCCCCCCcceEEecCCCCC----cchHHHHHHHHHHHHHHhhcCC
Q 021262 141 AALGNIPTIAFCDTDSPMRYVDIGIPANNKG----KHSIGCLFWLLARMVLQMRGTI 193 (315)
Q Consensus 141 As~lnIPtIAL~DTds~~~~VD~pIP~Nnds----~~SI~li~~lLaraVl~~rg~i 193 (315)
+.+.|.++|+|.+.+.+....|+.|-.-... .-..-+.+++|+..+-..+|..
T Consensus 85 ~~~~~~~vi~it~~~~s~~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a~~~g~~ 141 (153)
T cd05009 85 VKARGAKVIVITDDGDAKDLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGID 141 (153)
T ss_pred HHHcCCEEEEEecCCcccccCCeEEECCCCchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999987654333445544332221 2233444678888888777764
No 41
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=85.32 E-value=8.4 Score=36.21 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=33.3
Q ss_pred ccCCceEEEeCCCC-C---chhHHHhhhcCCCceeeccCCCCC--CcceEEecC
Q 021262 120 FNEPRLLILTDPRT-D---HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPA 167 (315)
Q Consensus 120 f~eP~lLIV~DP~~-d---~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~ 167 (315)
..+-|++|++.-.- . ..+++.|+..|+++|+|+|...++ .+.|+.|.+
T Consensus 185 ~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 185 LQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 46778877776433 2 346678889999999999986555 245665544
No 42
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=84.62 E-value=16 Score=35.46 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=51.7
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCCcc-------eEEecCCCCCcchHHHHHHHHHHHHHHh
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRYV-------DIGIPANNKGKHSIGCLFWLLARMVLQM 189 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~~V-------D~pIP~Nnds~~SI~li~~lLaraVl~~ 189 (315)
.+-+++|++.-.-+ ..+++.|...|+++|+|++ ++++.-. -+.||++.-+..|..+++..|. .++..
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~-~~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~-~~l~~ 154 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS-GGKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLL-KILEK 154 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC-CchHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHH-HHHHH
Confidence 55678888874443 4578899999999999996 4555433 6888988877788777776655 56666
Q ss_pred hcCCC
Q 021262 190 RGTIR 194 (315)
Q Consensus 190 rg~i~ 194 (315)
.|.++
T Consensus 155 ~Gl~~ 159 (337)
T PRK08674 155 LGLIP 159 (337)
T ss_pred cCCCc
Confidence 67654
No 43
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=83.33 E-value=6.6 Score=31.85 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=34.4
Q ss_pred ccCCceEEEeCCC-CC---chhHHHhhhcCCCceeeccC-CCCCC-cceEEecC
Q 021262 120 FNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (315)
Q Consensus 120 f~eP~lLIV~DP~-~d---~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (315)
..+-|++|++.-. .. ..+++.|+..|+|+|+|++. ++++. +.|+.|.+
T Consensus 45 ~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 45 VTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 4666888888633 33 46788999999999999985 45553 46666654
No 44
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=82.14 E-value=13 Score=36.29 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccc-----------------
Q 021262 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----------------- 116 (315)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~----------------- 116 (315)
+++.+..+..|.+.+.. ++++|+.++++....++=.|+..++-...|-+...-+=|..--=.
T Consensus 39 V~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~~g 118 (298)
T COG2103 39 VEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEELG 118 (298)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhcCccccHHHH
Confidence 55677778888888875 689999999998888887888777754433322111111111000
Q ss_pred -----cccccCCceEEEeCC----CCCchhHHHhhhcCCCceee-ccCCCCCCc-ceEEecC-----------CCCCcch
Q 021262 117 -----QTSFNEPRLLILTDP----RTDHQPIKEAALGNIPTIAF-CDTDSPMRY-VDIGIPA-----------NNKGKHS 174 (315)
Q Consensus 117 -----~~~f~eP~lLIV~DP----~~d~qaI~EAs~lnIPtIAL-~DTds~~~~-VD~pIP~-----------Nnds~~S 174 (315)
...+..=|+||=+-. -.=.-++++|+++|..||+| ||-+|++.. .||+|-- -=|+-..
T Consensus 119 ~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEvltGSTRlKaGTA 198 (298)
T COG2103 119 EADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKAGTA 198 (298)
T ss_pred HHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccccccccccccchH
Confidence 012456677776642 12256899999999999999 677887654 7887742 2245567
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 021262 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206 (315)
Q Consensus 175 I~li~~lLaraVl~~rg~i~~~~~w~v~~dl~ 206 (315)
-.|++++|+..+.-.-|+.-.. .|+|+-
T Consensus 199 QKlvLNMlST~~Mi~lGKvy~N----lMVDv~ 226 (298)
T COG2103 199 QKLVLNMLSTGVMIKLGKVYGN----LMVDVK 226 (298)
T ss_pred HHHHHHHHHHHHHHHhcccccc----eEEEee
Confidence 7899999999988888887543 488875
No 45
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=78.61 E-value=30 Score=31.52 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCc-cC-cccccc-----------c-
Q 021262 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FT-NQMQTS-----------F- 120 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGt-LT-N~~~~~-----------f- 120 (315)
+.-.+.+..|+..|.. +.++++||.+++.-....+..-.++.+|-+.-..+=+|+. || |..... |
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFs 100 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFS 100 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHH
Confidence 5556778888888886 5999999999887666566655666666666555556654 33 433211 1
Q ss_pred -------cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCC----CCCcceEEecCCC
Q 021262 121 -------NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDS----PMRYVDIGIPANN 169 (315)
Q Consensus 121 -------~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds----~~~~VD~pIP~Nn 169 (315)
++=|+||-+.+.-+ -.|++.|...++-||+|.-.|- .++-+.+-||..+
T Consensus 101 RqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~ 164 (176)
T COG0279 101 RQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTD 164 (176)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCc
Confidence 56789988887766 4588899999999999985553 3445667778763
No 46
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=78.18 E-value=9.8 Score=30.55 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=52.0
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHhCCcc---ccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHh
Q 021262 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAHA---IAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEA 141 (315)
Q Consensus 72 I~n~~~IlfVstr~~---~q~aV~kfA~~tga~~---i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EA 141 (315)
|.+..+|.|+++... ++.+-.++.+..+... -.+-+..+.+.+ ...=++||++....+ .+.++++
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~vi~is~sg~~~~~~~~~~~a 76 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLEN-----LDPDDLVIIISYSGETRELIELLRFA 76 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGG-----CSTTEEEEEEESSSTTHHHHHHHHHH
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhccc-----ccccceeEeeeccccchhhhhhhHHH
Confidence 456678999887643 4455555533332221 111122222222 233367777763333 4577899
Q ss_pred hhcCCCceeeccCCC-CCC-cc--eEEecCCCCC
Q 021262 142 ALGNIPTIAFCDTDS-PMR-YV--DIGIPANNKG 171 (315)
Q Consensus 142 s~lnIPtIAL~DTds-~~~-~V--D~pIP~Nnds 171 (315)
+..|+|+|+|++... ++. +. .+.+|.++..
T Consensus 77 k~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 77 KERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp HHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred HhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 999999999997644 332 24 4455555444
No 47
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=75.92 E-value=19 Score=34.18 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=33.7
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecC
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (315)
...=|++|++.-.-. -.+++.|+..|.|||+|.|+ +|++. ..|+.+..
T Consensus 175 ~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 175 LTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 455578888874433 34667889999999999999 77765 34554444
No 48
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=74.06 E-value=17 Score=38.05 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=47.1
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCCC---------CcchHHHHHHHHHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNK---------GKHSIGCLFWLLAR 184 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nnd---------s~~SI~li~~lLar 184 (315)
+.+.+++|++...-+ ..+++.|+..|++||+|.+. +|++. ..|+.|+.+.. +..|.-+++.+|+-
T Consensus 336 ~~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~ 415 (607)
T TIGR01135 336 VDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLAL 415 (607)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHH
Confidence 356678888864433 45788888899999999985 66653 56776665431 22233344556665
Q ss_pred HHHHhhcCCC
Q 021262 185 MVLQMRGTIR 194 (315)
Q Consensus 185 aVl~~rg~i~ 194 (315)
.+...+|.++
T Consensus 416 ~l~~~~g~~~ 425 (607)
T TIGR01135 416 KLAKARGTLS 425 (607)
T ss_pred HHHHHcCCCC
Confidence 6655556543
No 49
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=73.83 E-value=29 Score=33.65 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=53.6
Q ss_pred hCCCcEEEEcc---Cchh---HHHHHHHHHHhCCccccCCccCCccCcccccc------ccCCceEEEeCCCCC--chhH
Q 021262 73 ENPGDIIVQSA---RPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS------FNEPRLLILTDPRTD--HQPI 138 (315)
Q Consensus 73 ~n~~~IlfVst---r~~~---q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~------f~eP~lLIV~DP~~d--~qaI 138 (315)
....+|-||.. .++. .+.+++.++..|...+-. .+.......|.. -+.++.|||.-...+ ...|
T Consensus 21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~--~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l 98 (336)
T PRK15408 21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYD--GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPAL 98 (336)
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHH
Confidence 56677777642 3444 345678888888654321 222222222221 167899988744434 5788
Q ss_pred HHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 139 KEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 139 ~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
++|...|||+|.+ |++.+....++-|
T Consensus 99 ~~a~~~gIpVV~~-d~~~~~~~~~~~V 124 (336)
T PRK15408 99 KRAMQRGVKVLTW-DSDTKPECRSYYI 124 (336)
T ss_pred HHHHHCCCeEEEe-CCCCCCccceEEE
Confidence 9999999999986 5555444444444
No 50
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=73.72 E-value=19 Score=34.25 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=33.4
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEe
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGI 165 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pI 165 (315)
..+-|++|++.-.-+ .++++.|+..|+|||+|++. +|++. +-|+.+
T Consensus 87 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l 138 (321)
T PRK11543 87 IESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVL 138 (321)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEE
Confidence 467788888875433 45778999999999999985 55554 355555
No 51
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=72.45 E-value=5.9 Score=35.57 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=46.0
Q ss_pred HHHHHHHHHh-hCCCcEEEEccC-c-h---hHHHHHHHHHHhCCccccC-CccCCccCccccccccCCceEEEeCCCCCc
Q 021262 63 QMAARVIVAI-ENPGDIIVQSAR-P-Y---GQRAVLKFAKYTHAHAIAG-RHTPGTFTNQMQTSFNEPRLLILTDPRTDH 135 (315)
Q Consensus 63 ~~Aa~~I~~I-~n~~~IlfVstr-~-~---~q~aV~kfA~~tga~~i~g-rw~pGtLTN~~~~~f~eP~lLIV~DP~~d~ 135 (315)
..+++.+... ...++|.|++.. . . ..+.+++.++..|...+.. .+....+.+..+.....|+.|++.+-..-.
T Consensus 118 ~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~~d~~a~ 197 (281)
T cd06325 118 ETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDNTVA 197 (281)
T ss_pred HHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEcCchhHH
Confidence 3444555543 356778887432 2 2 2244556666666543321 111111222222222347888877533222
Q ss_pred hhHHHhhh----cCCCceeeccCC
Q 021262 136 QPIKEAAL----GNIPTIAFCDTD 155 (315)
Q Consensus 136 qaI~EAs~----lnIPtIAL~DTd 155 (315)
.+++.+.. .+||+|++-|+.
T Consensus 198 ~~~~~~~~~~~~~~ipvig~d~~~ 221 (281)
T cd06325 198 SAMEAVVKVANEAKIPVIASDDDM 221 (281)
T ss_pred hHHHHHHHHHHHcCCCEEEcCHHH
Confidence 33333333 479999998874
No 52
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=71.48 E-value=8.7 Score=35.15 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=42.0
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe----CCCC---CchhHHHhhhcCCCce
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRT---DHQPIKEAALGNIPTI 149 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~----DP~~---d~qaI~EAs~lnIPtI 149 (315)
+|+++........-+..+....|.....-++.-+.+.. .......+|.||++ +|.. ..+.++++...++|++
T Consensus 2 ~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLAD-EAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred eEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHH-HHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 36666665544444555566666654332221111110 00012357888887 3432 2467889888899999
Q ss_pred eecc
Q 021262 150 AFCD 153 (315)
Q Consensus 150 AL~D 153 (315)
|||=
T Consensus 81 GIC~ 84 (214)
T PRK07765 81 GVCL 84 (214)
T ss_pred EEcc
Confidence 9983
No 53
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=69.92 E-value=9.5 Score=34.77 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe--CCCCCchhHHHh
Q 021262 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT--DPRTDHQPIKEA 141 (315)
Q Consensus 65 Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~--DP~~d~qaI~EA 141 (315)
|.+-+..+ +.+++|.+|+.+.. ..+.++++.-+...+.+.+.++.| ...++||+. |+..+++...+|
T Consensus 21 a~rk~~~Ll~~ga~VtVvsp~~~--~~l~~l~~~~~i~~~~~~~~~~dl--------~~~~lVi~at~d~~ln~~i~~~a 90 (205)
T TIGR01470 21 ALRKARLLLKAGAQLRVIAEELE--SELTLLAEQGGITWLARCFDADIL--------EGAFLVIAATDDEELNRRVAHAA 90 (205)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCC--HHHHHHHHcCCEEEEeCCCCHHHh--------CCcEEEEECCCCHHHHHHHHHHH
Confidence 33444443 56778888876533 334444444333333333333322 234555544 333567889999
Q ss_pred hhcCCCce
Q 021262 142 ALGNIPTI 149 (315)
Q Consensus 142 s~lnIPtI 149 (315)
...|||+-
T Consensus 91 ~~~~ilvn 98 (205)
T TIGR01470 91 RARGVPVN 98 (205)
T ss_pred HHcCCEEE
Confidence 99999883
No 54
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=69.82 E-value=32 Score=36.52 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCceEEEeCCCCC----chhHHHhhhcCCCceeeccCC-CCC-CcceEEecCC
Q 021262 122 EPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPAN 168 (315)
Q Consensus 122 eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~N 168 (315)
.-+++|++...-+ ..+++.|+..|+|||+|++.. |++ +..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 4467777754433 468889999999999999864 554 4677877754
No 55
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=68.95 E-value=8.3 Score=34.66 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=31.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEec
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (315)
+.+|.||+.....+...++++...|||+|.+ |++.+-....+..+
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~ 107 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQPYCYVGS 107 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCCCCCEEEE
Confidence 3578888887666667789999999999966 77654333444443
No 56
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=67.34 E-value=17 Score=35.97 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccc-cCCccCCccCccccc------c------ccCCceEE
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAI-AGRHTPGTFTNQMQT------S------FNEPRLLI 127 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i-~grw~pGtLTN~~~~------~------f~eP~lLI 127 (315)
+...-..+|..+++.|+=++|.+|.+. .+.++....|-.|+ -|+.- +++...... . -..||++|
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~yg~~y~~iG~~g-~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~i 88 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDLYGIDYIVIGKHG-DSLYGKLLESIERQYKLLKLIKKFKPDVAI 88 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHHcCCCeEEEcCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 455566777888776666677777665 35677778887664 44443 333332110 0 13799888
Q ss_pred EeCCCCCchhHHHhhhcCCCceeeccCCCC
Q 021262 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (315)
-.. ...+.+=|.-+|||+|.|+||.-.
T Consensus 89 s~~---s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 89 SFG---SPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred ecC---cHHHHHHHHHhCCCeEEEecCchh
Confidence 543 234666788999999999999654
No 57
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.44 E-value=20 Score=31.88 Aligned_cols=58 Identities=12% Similarity=-0.058 Sum_probs=35.8
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCC-CcceEEecCCCCCcchHHHHHHHHH
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLA 183 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~Nnds~~SI~li~~lLa 183 (315)
.+|.||+..+..+...++++...|||+|.+ |++.+. ..+.+.-. |...+..++...|.
T Consensus 60 ~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~v~~---d~~~~g~~~~~~l~ 118 (270)
T cd06294 60 RVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPEDDKENITYVDN---DNIQAGYDATEYLI 118 (270)
T ss_pred CcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCCCCCCCCCeEEE---CcHHHHHHHHHHHH
Confidence 478888887665667788999999999987 554432 23444332 22344444444333
No 58
>PRK13566 anthranilate synthase; Provisional
Probab=64.34 E-value=39 Score=36.85 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=50.2
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-CC-----CCchhHHHhhhcCCC
Q 021262 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR-----TDHQPIKEAALGNIP 147 (315)
Q Consensus 74 n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~-----~d~qaI~EAs~lnIP 147 (315)
++.+|++|.........+.++.+..|+....-++--. ........||.||++. |. .....|+++...++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~----~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA----EEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC----hhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCc
Confidence 3568999987766667788888888876644343210 0011124689988863 21 236788898889999
Q ss_pred ceeec
Q 021262 148 TIAFC 152 (315)
Q Consensus 148 tIAL~ 152 (315)
++|+|
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 99998
No 59
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=63.51 E-value=62 Score=34.87 Aligned_cols=92 Identities=8% Similarity=0.069 Sum_probs=51.7
Q ss_pred hhCCCcEEEEccCch--hHHHHHHHHHHh-CCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 72 IENPGDIIVQSARPY--GQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 72 I~n~~~IlfVstr~~--~q~aV~kfA~~t-ga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
+.+-.+|.|+++... .-.....+..+. +.... ...+..|.++... +..-+++|++...-+ ..+++.|+..
T Consensus 360 l~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~--~~~~sef~~~~~~-~~~~~lvI~ISqSGeT~eti~Al~~Ak~~ 436 (680)
T PLN02981 360 IRRSRRIVFIGCGTSYNAALAARPILEELSGVPVT--MELASDLLDRQGP-IYREDTAVFVSQSGETADTLRALEYAKEN 436 (680)
T ss_pred HhcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEE--EecchHHHhcccc-CCCCCeEEEEeCCcCCHHHHHHHHHHHHC
Confidence 455677888866542 223333344442 32211 1234444444222 334467777764333 5688899999
Q ss_pred CCCceeeccC-CCCCC-cceEEec
Q 021262 145 NIPTIAFCDT-DSPMR-YVDIGIP 166 (315)
Q Consensus 145 nIPtIAL~DT-ds~~~-~VD~pIP 166 (315)
|.+||+|++. +|++. ..|+.|.
T Consensus 437 Ga~~IaITn~~~S~La~~ad~~i~ 460 (680)
T PLN02981 437 GALCVGITNTVGSAISRGTHCGVH 460 (680)
T ss_pred CCcEEEEECCCCChhHhccCeeEE
Confidence 9999999865 67763 3466555
No 60
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.00 E-value=24 Score=31.18 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEec
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (315)
+.+|.||+.....+...++++...|||+|.+ |++.+...+++..+
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~ 97 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGPGVDAVCS 97 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCCCCCEEEE
Confidence 3568788776555556788999999999987 65544445665443
No 61
>PRK05670 anthranilate synthase component II; Provisional
Probab=61.41 E-value=14 Score=32.71 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=42.3
Q ss_pred EEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe----CCCC---CchhHHHhhhcCCCcee
Q 021262 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRT---DHQPIKEAALGNIPTIA 150 (315)
Q Consensus 78 IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~----DP~~---d~qaI~EAs~lnIPtIA 150 (315)
||+|.........+.++....|.....-++..... ....-..||.||++ +|.. ....|++ ...++|++|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~---~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~-~~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITL---EEIEALNPDAIVLSPGPGTPAEAGISLELIRE-FAGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCH---HHHHhCCCCEEEEcCCCCChHHcchHHHHHHH-hcCCCCEEE
Confidence 78888877766677777777787765444432111 11111248999997 3321 1233443 355789999
Q ss_pred ec
Q 021262 151 FC 152 (315)
Q Consensus 151 L~ 152 (315)
||
T Consensus 78 IC 79 (189)
T PRK05670 78 VC 79 (189)
T ss_pred EC
Confidence 87
No 62
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=60.66 E-value=26 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.060 Sum_probs=36.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHHH
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 183 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lLa 183 (315)
+.++.||+.....+...++++...|||+|.+ |++.+-..+.+.- .+...+..++...|.
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~~~~~~~~v~---~d~~~~g~~~~~~l~ 112 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLV-DRPLDGLGVDSVG---IDNRAGAYLAVEHLI 112 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccccCCCCCEEe---eccHHHHHHHHHHHH
Confidence 4688888877655555588999999999987 4444323344432 223445555544443
No 63
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=60.34 E-value=39 Score=35.87 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHH-HhhCCCcEEEEccCc----hhHHHHHHHHHHhCC----ccccCCccCCccCccc--cc-cccCCceE
Q 021262 59 WEKLQMAARVIV-AIENPGDIIVQSARP----YGQRAVLKFAKYTHA----HAIAGRHTPGTFTNQM--QT-SFNEPRLL 126 (315)
Q Consensus 59 ~ekL~~Aa~~I~-~I~n~~~IlfVstr~----~~q~aV~kfA~~tga----~~i~grw~pGtLTN~~--~~-~f~eP~lL 126 (315)
+..+.+|+..|. +|+++.+|++++--. .+.-++.++-++.|. +||-.|+..|-=-|.. .. .-...+||
T Consensus 52 l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~Li 131 (575)
T PRK11070 52 LSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLI 131 (575)
T ss_pred hhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEE
Confidence 455667777765 478889999987653 233455567777776 4666666655322221 11 11457899
Q ss_pred EEeCCCC-CchhHHHhhhcCCCceeeccCC
Q 021262 127 ILTDPRT-DHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 127 IV~DP~~-d~qaI~EAs~lnIPtIAL~DTd 155 (315)
|.+|... ++.+|..|..+||.+|-+ |-.
T Consensus 132 ItvD~Gi~~~e~i~~a~~~gidvIVt-DHH 160 (575)
T PRK11070 132 VTVDNGISSHAGVAHAHALGIPVLVT-DHH 160 (575)
T ss_pred EEEcCCcCCHHHHHHHHHCCCCEEEE-CCC
Confidence 9999654 578999999999988753 543
No 64
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=58.90 E-value=53 Score=30.87 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=24.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCc
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (315)
..-|++ |++.. ..+.||..+|+|+|.+-+...-...
T Consensus 276 ~~ad~~-v~~Sg---gi~~Ea~~~g~PvI~~~~~~~~~~~ 311 (363)
T cd03786 276 KNADLV-LTDSG---GIQEEASFLGVPVLNLRDRTERPET 311 (363)
T ss_pred HcCcEE-EEcCc---cHHhhhhhcCCCEEeeCCCCccchh
Confidence 345554 46665 3678999999999998765433333
No 65
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=58.12 E-value=19 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCc
Q 021262 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN 114 (315)
Q Consensus 63 ~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN 114 (315)
.++.+.+..++.+..+.++.+.+...+-|.++|+.+|..++.-.=.+|.+.-
T Consensus 14 l~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~~~~~~~~~ 65 (69)
T cd03420 14 LKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLETEKGKVKA 65 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence 3445555666555556677888888889999999999988653334555543
No 66
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=57.97 E-value=72 Score=34.41 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=51.9
Q ss_pred HhhCCCcEEEEccCchh--HHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021262 71 AIENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (315)
Q Consensus 71 ~I~n~~~IlfVstr~~~--q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~l 144 (315)
.+.+-.+|.|+++.... -...+.+..+.....+. ...+..|... ...+.+-+++|++...-+ ..+++.|+..
T Consensus 350 ~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~-v~~asef~~~-~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~ 427 (670)
T PTZ00394 350 AILTSRRILFIACGTSLNSCLAVRPLFEELVPLPIS-VENASDFLDR-RPRIQRDDVCFFVSQSGETADTLMALQLCKEA 427 (670)
T ss_pred HHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEE-Eeccchhhhh-ccCCCCCCEEEEEECCcCcHHHHHHHHHHHHC
Confidence 34566778888665322 22222233332211111 1122233221 122344567777764433 4578899999
Q ss_pred CCCceeeccC-CCCC-CcceEEecCC
Q 021262 145 NIPTIAFCDT-DSPM-RYVDIGIPAN 168 (315)
Q Consensus 145 nIPtIAL~DT-ds~~-~~VD~pIP~N 168 (315)
|++||+|++. +|++ +..|+.|..+
T Consensus 428 Ga~tIaITn~~~S~La~~AD~~l~~~ 453 (670)
T PTZ00394 428 GAMCVGITNVVGSSISRLTHYAIHLN 453 (670)
T ss_pred CCcEEEEECCCCCHHHHhcCeEEEec
Confidence 9999999876 4554 4677777653
No 67
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=57.53 E-value=62 Score=35.38 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC----CC--CCchhHHHhhhcCCC
Q 021262 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PR--TDHQPIKEAALGNIP 147 (315)
Q Consensus 74 n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D----P~--~d~qaI~EAs~lnIP 147 (315)
.+.+|++|.........+.++-+..|.....-++..+ .. ......|+.||++. |. .....|+++...++|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~---~~-~~~~~~~DgLILsgGPGsp~d~~~~~~I~~~~~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA---EA-AFDERRPDLVVLSPGPGRPADFDVAGTIDAALARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC---hh-hhhhcCCCEEEEcCCCCCchhcccHHHHHHHHHCCCC
Confidence 3467999977655556677777888876533333211 00 01124589888862 22 235678888889999
Q ss_pred ceeec
Q 021262 148 TIAFC 152 (315)
Q Consensus 148 tIAL~ 152 (315)
++|||
T Consensus 591 vLGIC 595 (717)
T TIGR01815 591 VFGVC 595 (717)
T ss_pred EEEEC
Confidence 99998
No 68
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=56.41 E-value=79 Score=28.24 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=48.8
Q ss_pred EEEEccC---chhHHHHHHHHHHhCCccccCCcc------CCccCc---------cccc----cc---cCCceEEEeCCC
Q 021262 78 IIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHT------PGTFTN---------QMQT----SF---NEPRLLILTDPR 132 (315)
Q Consensus 78 IlfVstr---~~~q~aV~kfA~~tga~~i~grw~------pGtLTN---------~~~~----~f---~eP~lLIV~DP~ 132 (315)
+++++.. ....+.+.+|++++|...++.-.- .|.+.+ .-+. .+ ..-|||+++..+
T Consensus 31 vIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG~~ 110 (162)
T TIGR00315 31 LLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLGII 110 (162)
T ss_pred EEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEEEEeCCc
Confidence 5666653 367888999999999876654322 233322 1111 13 688999999977
Q ss_pred CCc--h---hHHHhhhcCCCceeeccCCC
Q 021262 133 TDH--Q---PIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 133 ~d~--q---aI~EAs~lnIPtIAL~DTds 156 (315)
... | .+|--+ ++-||+||.--.
T Consensus 111 ~y~~~~~ls~lk~f~--~~~~i~l~~~y~ 137 (162)
T TIGR00315 111 YYYLSQMLSSLKHFS--HIVTIAIDKYYQ 137 (162)
T ss_pred chHHHHHHHHHHhhc--CcEEEEecCCCC
Confidence 653 2 334322 799999996543
No 69
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=55.44 E-value=1.9e+02 Score=28.72 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHH-hhCC--CcEEEEccC--chhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCC
Q 021262 57 KTWEKLQMAARVIVA-IENP--GDIIVQSAR--PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDP 131 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~-I~n~--~~IlfVstr--~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP 131 (315)
++.+....-...|.. +++. ..|+|+++. ......++-+.+..+...+. --.+.-|.......+.+=.++|++..
T Consensus 18 ~~~~~~~~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~-~~~~se~~~~~~~~~~~~~lvi~~S~ 96 (340)
T COG2222 18 RLLEANRAVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVA-AIPASEFLTNGAKYLGEDSLVIAFSQ 96 (340)
T ss_pred HHHHhhhhHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceee-eechhHHhccCccccCCCeEEEEEeC
Confidence 333333333334443 3333 478888553 44555555555533322211 11223333333333333346666664
Q ss_pred CCC----chhHHHhhhcCCCceeeccC-CCCCC-cceEEecCCCCCcchHHHHHHHHHHHHHH
Q 021262 132 RTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNKGKHSIGCLFWLLARMVLQ 188 (315)
Q Consensus 132 ~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nnds~~SI~li~~lLaraVl~ 188 (315)
.-+ .-+++.|+..|..||+|++. ||++. ..||.|+---.-..++....++....+..
T Consensus 97 SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T~s~~~~~~a~ 159 (340)
T COG2222 97 SGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASLLAL 159 (340)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCchHHHHHHHHHHHHHHHH
Confidence 444 45778888899999999876 56554 36666654322233455544444443333
No 70
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=55.42 E-value=57 Score=33.83 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst---r~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~e 122 (315)
.+..+++.|.+-++| +++++. +......+.+|++++|+..++.----|.|-... ...+.+
T Consensus 196 ~~~~~~~~L~~A~rP--vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~ 273 (572)
T PRK06456 196 ALKKAAEILINAERP--IILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALE 273 (572)
T ss_pred HHHHHHHHHHhCCCc--EEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHHHh
Confidence 355555555543333 566663 335678899999999998765422234443211 012468
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+||++..+-+
T Consensus 274 aDlvl~lG~~~~ 285 (572)
T PRK06456 274 SDAMLVVGARFS 285 (572)
T ss_pred CCEEEEECCCCc
Confidence 999999997754
No 71
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.05 E-value=16 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=38.2
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCC-c------ceEEecCCCCCcchHH
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMR-Y------VDIGIPANNKGKHSIG 176 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~-~------VD~pIP~Nnds~~SI~ 176 (315)
..+-|++|++...-+ ..+++.|+..|+++|+|++ ++++. . .-+++|.+.-++.|.-
T Consensus 41 ~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~~~~~~~~~~~~~p~~~~~r~s~~ 107 (119)
T cd05017 41 VDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLEMAREHGVPVIIIPKGLQPRAAFP 107 (119)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHHHHHHcCCcEEECCCCCCCceeHH
Confidence 456688888764433 4577889999999999995 44433 2 3377788776676643
No 72
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=54.80 E-value=47 Score=30.02 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHhCCccccCCccCCccCcccccc---------------------
Q 021262 64 MAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS--------------------- 119 (315)
Q Consensus 64 ~Aa~~I~~I~n~~~IlfVstr~~---~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~--------------------- 119 (315)
.++.+|++.+ .-+|+||.+-. ..+.+.|+++.-+..-++ ++++.+|.+...
T Consensus 27 v~ammIkkAk--rPLlivGp~~~dee~~E~~vKi~ekfnipiva---Ta~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~ 101 (170)
T COG1880 27 VVAMMIKKAK--RPLLIVGPLALDEELLELAVKIIEKFNIPIVA---TASSMGNLIGRGIGSEYINLHAITQYLTDPNWP 101 (170)
T ss_pred HHHHHHHhcC--CceEEecccccCHHHHHHHHHHHHhcCCceEe---cchhhcchhhcccccchhHHHHHHHHhcCCCCC
Confidence 3455555543 34788888744 445566777776655554 455555443221
Q ss_pred -c---cCCceEEEeCCCCC-----chhHHHhhhcCCCceeeccCCCCCCcceEEec
Q 021262 120 -F---NEPRLLILTDPRTD-----HQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (315)
Q Consensus 120 -f---~eP~lLIV~DP~~d-----~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (315)
| --+|++|++..... .+.++-.+ +|-+|+||-.-++- -||..|
T Consensus 102 G~dg~g~yDlviflG~~~yy~sq~Ls~lKhFs--~i~tiaId~~Y~pn--Ad~SFp 153 (170)
T COG1880 102 GFDGNGNYDLVIFLGSIYYYLSQVLSGLKHFS--NIKTIAIDRYYQPN--ADYSFP 153 (170)
T ss_pred CcCCCCCcceEEEEeccHHHHHHHHHHhhhhh--cceEEEeccccCcC--ccccCC
Confidence 1 47899999998776 34667666 99999999887763 444443
No 73
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=53.53 E-value=25 Score=25.97 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCc
Q 021262 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT 111 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGt 111 (315)
|.++.+.+..+..+..+.++.+.+...+-|.++++..|..++.-.=.+|.
T Consensus 14 ll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~~~~~ 63 (70)
T PF01206_consen 14 LLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEEEGGE 63 (70)
T ss_dssp HHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEESSSS
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCE
Confidence 44556666666566667788888888889999999999875543224443
No 74
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=53.49 E-value=1.9e+02 Score=26.88 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=55.6
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCc-cCccccccccCCceEEEeCCCCC----chhHHHhhhcCCC
Q 021262 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIP 147 (315)
Q Consensus 73 ~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGt-LTN~~~~~f~eP~lLIV~DP~~d----~qaI~EAs~lnIP 147 (315)
+..|+|+|.+-...+. +-+|||.+.-++-..-.|++.+ .-.-..-.+..=|+||.+.-.-+ ...+.=|+..+++
T Consensus 37 ~~~gkv~V~G~GkSG~-Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~ 115 (202)
T COG0794 37 ECKGKVFVTGVGKSGL-IGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAK 115 (202)
T ss_pred hcCCcEEEEcCChhHH-HHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCc
Confidence 3578899988776554 5678888854332222233310 00111122344478777764333 3466778899999
Q ss_pred ceeec-cCCCCCC---cceEEecCCCC
Q 021262 148 TIAFC-DTDSPMR---YVDIGIPANNK 170 (315)
Q Consensus 148 tIAL~-DTds~~~---~VD~pIP~Nnd 170 (315)
+|++. +-||++- -+-+.||.-.+
T Consensus 116 liaiT~~~~SsLak~aDvvl~ip~~~e 142 (202)
T COG0794 116 LIAITSNPDSSLAKAADVVLVIPVKTE 142 (202)
T ss_pred EEEEeCCCCChHHHhcCeEEEccCccc
Confidence 99997 4455442 35666666443
No 75
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=53.49 E-value=38 Score=29.91 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=29.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
+..|.||+..+..+...++++...+||+|.+ |++.+...+.+.
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~v 96 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIPELGVDTV 96 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCCCCCCCEE
Confidence 3568888876655556688988899999997 555433334443
No 76
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=52.19 E-value=28 Score=32.59 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=38.5
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe--CCCCCchhHHHhhhcCCCcee
Q 021262 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT--DPRTDHQPIKEAALGNIPTIA 150 (315)
Q Consensus 73 ~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~--DP~~d~qaI~EAs~lnIPtIA 150 (315)
+.+++|.+|+-.- ..-+..+++.-+...+...|.++-| .-.++||+. |+..|++...+|...++++..
T Consensus 46 ~~gA~VtVVap~i--~~el~~l~~~~~i~~~~r~~~~~dl--------~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 46 KKGCYVYILSKKF--SKEFLDLKKYGNLKLIKGNYDKEFI--------KDKHLIVIATDDEKLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred hCCCEEEEEcCCC--CHHHHHHHhCCCEEEEeCCCChHHh--------CCCcEEEECCCCHHHHHHHHHHHHHcCCeEEE
Confidence 4556666665432 2223334433333333333333333 223556555 456667888889888999876
Q ss_pred ecc
Q 021262 151 FCD 153 (315)
Q Consensus 151 L~D 153 (315)
..|
T Consensus 116 vd~ 118 (223)
T PRK05562 116 CSD 118 (223)
T ss_pred cCC
Confidence 544
No 77
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=51.82 E-value=26 Score=30.96 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=28.3
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
..|.+|+.....+...+.++...|||+|.+ |++.+...+++..
T Consensus 59 ~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~ 101 (268)
T cd06271 59 LVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTELGDPHPWVD 101 (268)
T ss_pred CCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCCCCCCCeEe
Confidence 467777766544445678888899999976 6654433445443
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.18 E-value=35 Score=37.02 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCC
Q 021262 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (315)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~ 133 (315)
+-.|=...|..|+..+..-...-++++||..+.. .-++++++..|..- .-...|...| ...-++.-|++|+....+
T Consensus 527 ~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~-~~L~~l~~~lgL~~--~V~flG~~~d-v~~ll~aaDv~VlpS~~E 602 (694)
T PRK15179 527 DDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLL-ESVREFAQRLGMGE--RILFTGLSRR-VGYWLTQFNAFLLLSRFE 602 (694)
T ss_pred CccCCHHHHHHHHHHHHHHCcCeEEEEEccCcch-HHHHHHHHHcCCCC--cEEEcCCcch-HHHHHHhcCEEEeccccc
Confidence 3344445555555444332123467777775543 33566777666421 0112333222 233345667777765332
Q ss_pred C-chhHHHhhhcCCCceeeccCCCCCCcc-----eEEecCCCC
Q 021262 134 D-HQPIKEAALGNIPTIAFCDTDSPMRYV-----DIGIPANNK 170 (315)
Q Consensus 134 d-~qaI~EAs~lnIPtIAL~DTds~~~~V-----D~pIP~Nnd 170 (315)
. ...+-||..+|+|||+- |.....+.| -+-+|.+|.
T Consensus 603 gfp~vlLEAMA~G~PVVat-~~gG~~EiV~dg~~GlLv~~~d~ 644 (694)
T PRK15179 603 GLPNVLIEAQFSGVPVVTT-LAGGAGEAVQEGVTGLTLPADTV 644 (694)
T ss_pred cchHHHHHHHHcCCeEEEE-CCCChHHHccCCCCEEEeCCCCC
Confidence 2 56788999999999984 444444433 345666654
No 79
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=50.38 E-value=1.1e+02 Score=28.66 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=58.5
Q ss_pred cCHHHHHHHHHH-----------HHHHHHHh-hCCCcEEEEccCch--hHHHHHHHHHHhCCcccc--CCccCCccCccc
Q 021262 53 INLGKTWEKLQM-----------AARVIVAI-ENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIA--GRHTPGTFTNQM 116 (315)
Q Consensus 53 INL~kT~ekL~~-----------Aa~~I~~I-~n~~~IlfVstr~~--~q~aV~kfA~~tga~~i~--grw~pGtLTN~~ 116 (315)
++=.+.|+.... |..+|..+ +++.+|.||++|.. ....++.+.+..|..+.. .-.+.|.-....
T Consensus 96 ~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~ 175 (237)
T PRK11009 96 LKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQY 175 (237)
T ss_pred cChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCC
Confidence 455566666655 67777777 67778888998863 233445555555652111 112333322111
Q ss_pred --cccccCCc-eEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCC
Q 021262 117 --QTSFNEPR-LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (315)
Q Consensus 117 --~~~f~eP~-lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~N 168 (315)
....++.+ .|+|=|...|.++ |...||++|++.-.-.+ .+ -|+|-|
T Consensus 176 ~K~~~l~~~~i~I~IGDs~~Di~a---A~~AGi~~I~v~~G~~~-~~--~~~~~~ 224 (237)
T PRK11009 176 TKTQWLKKKNIRIFYGDSDNDITA---AREAGARGIRILRAANS-TY--KPLPQA 224 (237)
T ss_pred CHHHHHHhcCCeEEEcCCHHHHHH---HHHcCCcEEEEecCCCC-CC--Cccccc
Confidence 11122334 4555577777665 45558888877544222 11 266665
No 80
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=50.34 E-value=47 Score=29.48 Aligned_cols=57 Identities=14% Similarity=-0.108 Sum_probs=34.7
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcchHHHHHHHH
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~SI~li~~lL 182 (315)
..|.+|++....+.+.++++...|||+|.+ |+..+...+++... |......++...|
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~v~~---d~~~~~~~~~~~l 111 (268)
T cd06273 55 GVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYSPDSPYPCVGF---DNREAGRLAARHL 111 (268)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHH
Confidence 467788887666667788888899999987 44333223444432 2344444444444
No 81
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=49.25 E-value=39 Score=29.98 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.8
Q ss_pred chhHHHhhhcCCCceeecc
Q 021262 135 HQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~D 153 (315)
...|+++...++|++|+|-
T Consensus 61 ~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 61 IEALKEAIASGKPFLGICL 79 (198)
T ss_pred HHHHHHHHHCCCcEEEECH
Confidence 4678888888999999984
No 82
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=49.03 E-value=50 Score=32.09 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch--------hHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPY--------GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD 130 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~--------~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D 130 (315)
...|..|+..+..-...-+++++|.... .++-+++.++..+.. -+|+|..-.+.....++.-|++|+..
T Consensus 208 ~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~---v~~~G~~~~~~l~~~~~~aDv~v~pS 284 (380)
T PRK15484 208 ILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDR---CIMLGGQPPEKMHNYYPLADLVVVPS 284 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCc---EEEeCCCCHHHHHHHHHhCCEEEeCC
Confidence 3445555555433212234566665321 223445555555432 13444321222333356668877754
Q ss_pred CCCC--chhHHHhhhcCCCceeeccCCCCCCc
Q 021262 131 PRTD--HQPIKEAALGNIPTIAFCDTDSPMRY 160 (315)
Q Consensus 131 P~~d--~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (315)
-..+ ...+-||...|+|+|+- |.....+.
T Consensus 285 ~~~E~f~~~~lEAma~G~PVI~s-~~gg~~Ei 315 (380)
T PRK15484 285 QVEEAFCMVAVEAMAAGKPVLAS-TKGGITEF 315 (380)
T ss_pred CCccccccHHHHHHHcCCCEEEe-CCCCcHhh
Confidence 3323 35788999999999994 44444443
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=48.59 E-value=82 Score=29.72 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHh-h---CCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCC
Q 021262 57 KTWEKLQMAARVIVAI-E---NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~I-~---n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~ 132 (315)
|-...|..|++.+..- . .+-.++++|..+.. ..+.+.++..|.... -+..|...+ ....+..-|++|+..-.
T Consensus 207 Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~-~~~~~~~~~~~~~~~--v~~~g~~~~-~~~~~~~adi~v~pS~~ 282 (374)
T TIGR03088 207 KDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR-GACEQMVRAAGLAHL--VWLPGERDD-VPALMQALDLFVLPSLA 282 (374)
T ss_pred cCHHHHHHHHHHHHHhCcccccceEEEEecCCchH-HHHHHHHHHcCCcce--EEEcCCcCC-HHHHHHhcCEEEecccc
Confidence 4445566666555432 1 13456677765433 345666766654321 244554322 22334566777665422
Q ss_pred CC-chhHHHhhhcCCCceeeccCCCCCCc
Q 021262 133 TD-HQPIKEAALGNIPTIAFCDTDSPMRY 160 (315)
Q Consensus 133 ~d-~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (315)
+. ...+-||..+|+|+|+ .|.....+.
T Consensus 283 Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~ 310 (374)
T TIGR03088 283 EGISNTILEAMASGLPVIA-TAVGGNPEL 310 (374)
T ss_pred ccCchHHHHHHHcCCCEEE-cCCCCcHHH
Confidence 22 4578999999999998 454444443
No 84
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=48.26 E-value=43 Score=29.29 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=40.8
Q ss_pred EEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe----CCCCC--chhHHHhhhcCCCceee
Q 021262 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRTD--HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 78 IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~----DP~~d--~qaI~EAs~lnIPtIAL 151 (315)
||++....+....+.++.++.|.....-++--+ .........++.||++ ++..+ ...+.++...++|++|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGI 77 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEI---TLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGV 77 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCC---CHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEE
Confidence 466665554445555666667766544444211 1111123567888886 23222 34566666678999999
Q ss_pred c
Q 021262 152 C 152 (315)
Q Consensus 152 ~ 152 (315)
|
T Consensus 78 C 78 (184)
T cd01743 78 C 78 (184)
T ss_pred C
Confidence 8
No 85
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=47.97 E-value=21 Score=31.54 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=48.2
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcccccc----------------------------------ccC
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS----------------------------------FNE 122 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~----------------------------------f~e 122 (315)
+|.++|..+-|+..+ |-+-||.....+.| ||+=+...... ...
T Consensus 2 ~ialvG~PNvGKStL--fN~Ltg~~~~v~n~-pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 2 RIALVGNPNVGKSTL--FNALTGAKQKVGNW-PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp EEEEEESTTSSHHHH--HHHHHTTSEEEEES-TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHH--HHHHHCCCceecCC-CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 478899988888765 56677777666666 56544433211 157
Q ss_pred CceEE-EeCCC---CCchhHHHhhhcCCCceeecc
Q 021262 123 PRLLI-LTDPR---TDHQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 123 P~lLI-V~DP~---~d~qaI~EAs~lnIPtIAL~D 153 (315)
||++| |+|.. .+...+.+...+|+|+|-+.+
T Consensus 79 ~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN 113 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLN 113 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 88754 45643 234455677888999988865
No 86
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.24 E-value=83 Score=28.16 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=28.7
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCCC--CcceEEec
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIP 166 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP 166 (315)
+.+|.||+.....+ ...++++...|||+|.+ |++.+. ..+++...
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~~~~~~~~~v~~ 102 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSINLEAGVVTQVQS 102 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCCCCCcCeEEEEec
Confidence 35788888654433 34678888999999987 554332 33455433
No 87
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=47.06 E-value=2e+02 Score=27.89 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=41.3
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCCCC-------cceEEecCCCCCcchHHHHHHH
Q 021262 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMR-------YVDIGIPANNKGKHSIGCLFWL 181 (315)
Q Consensus 121 ~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~-------~VD~pIP~Nnds~~SI~li~~l 181 (315)
...+++|++...-+ ..+++.|...|+++|+|++ +.++. ..-+.||.+.-++.|...++-.
T Consensus 65 ~~~dlvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~-~g~L~~~a~~~~~~~i~vP~~~~~R~s~~~~~~~ 135 (308)
T TIGR02128 65 DGKTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITS-GGRLEEMAKERGLDVIKIPKGLQPRAAFPYLLTP 135 (308)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECC-CcHHHHHHHhcCCeEEEcCCCCCCeeeHHHHHHH
Confidence 45578887764433 4567889999999999996 33222 3457789998888887544433
No 88
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=46.65 E-value=39 Score=24.61 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcccc
Q 021262 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~ 104 (315)
|.++.+.+..+..+..+.++.+.+...+-|.++++..|..++.
T Consensus 13 l~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 13 VLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLE 55 (69)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEE
Confidence 3445555566655556677788888888899999999887653
No 89
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=46.63 E-value=2.3e+02 Score=30.24 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=65.6
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHhC--C-ccccCCccCCccCccccccccCCceEEEeCCCCC-----chhHHH
Q 021262 72 IENPGDIIVQSARPY---GQRAVLKFAKYTH--A-HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKE 140 (315)
Q Consensus 72 I~n~~~IlfVstr~~---~q~aV~kfA~~tg--a-~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-----~qaI~E 140 (315)
+.+-.+|.|++.... ++..-+|+-+-+. + .|-.+-|..|.+.. +. -.+-+.+|++.+... ...++|
T Consensus 493 l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~al-i~--~~~~~~VI~i~~~~~~~~~~~~~~~~ 569 (640)
T PTZ00295 493 LKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFAL-ID--KEKNTPVILIILDDEHKELMINAAEQ 569 (640)
T ss_pred HhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHH-hc--CCCCCeEEEEEcCCccHHHHHHHHHH
Confidence 356677888877653 4555556555432 2 23344555563321 11 002244444443322 467889
Q ss_pred hhhcCCCceeeccCCCCC-Cc--ceEEecCCCCCcch--HHHHHHHHHHHHHHhhcCC
Q 021262 141 AALGNIPTIAFCDTDSPM-RY--VDIGIPANNKGKHS--IGCLFWLLARMVLQMRGTI 193 (315)
Q Consensus 141 As~lnIPtIAL~DTds~~-~~--VD~pIP~Nnds~~S--I~li~~lLaraVl~~rg~i 193 (315)
+...|-++|+|.+..+.+ .+ ..+.+|.+ .-... .-..+++|+..+-..||..
T Consensus 570 lk~rga~vi~It~~~~~l~~~ad~~i~ip~~-~~l~p~~~~ip~Qllay~la~~~G~d 626 (640)
T PTZ00295 570 VKARGAYIIVITDDEDLVKDFADEIILIPSN-GPLTALLAVIPLQLLAYEIAILRGIN 626 (640)
T ss_pred HHHcCCEEEEEecCCccccccCCeEEEeCCc-ccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999998765322 22 33455653 21222 2233688898888888864
No 90
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.54 E-value=53 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.9
Q ss_pred cCCceEEEeCCC--CCchhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPR--TDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~--~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
+.+|.||+.-.. .-...+++|..-|||+|.+ |++
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~-d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV-DSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEE-SST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEE-ecc
Confidence 568988877433 3457899999999999985 555
No 91
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=46.48 E-value=63 Score=28.58 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=28.7
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
..|.||+.....+...++++...|||+|.+ |++.+...+++..
T Consensus 55 ~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~ 97 (265)
T cd06299 55 RVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREITGSPIPFVT 97 (265)
T ss_pred CCCEEEEcCCCCChHHHHHHHhCCCCEEEE-ecccCCCCCCEEE
Confidence 467777776555556789999999999876 5543333345543
No 92
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=46.47 E-value=4.3 Score=32.66 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=23.1
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecC
Q 021262 123 PRLLILT--DPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (315)
Q Consensus 123 P~lLIV~--DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~ 167 (315)
-++||+. |+..+.+..++|...|||+-. -.+|++-||.+|+
T Consensus 61 ~~lV~~at~d~~~n~~i~~~a~~~~i~vn~----~D~p~~~dF~~Pa 103 (103)
T PF13241_consen 61 ADLVFAATDDPELNEAIYADARARGILVNV----VDDPELCDFIFPA 103 (103)
T ss_dssp ESEEEE-SS-HHHHHHHHHHHHHTTSEEEE----TT-CCCCSEE--E
T ss_pred heEEEecCCCHHHHHHHHHHHhhCCEEEEE----CCCcCCCeEEcCC
Confidence 3455544 344556777888889998633 2345667777763
No 93
>CHL00101 trpG anthranilate synthase component 2
Probab=46.26 E-value=59 Score=28.91 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=38.6
Q ss_pred EEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC------chhHHHhhhcCCCceee
Q 021262 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD------HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 78 IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d------~qaI~EAs~lnIPtIAL 151 (315)
||+|....+...-+.+..+..|.....-+.-. .+........|+.||++.-..+ ...+.++...++|++||
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI 78 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDE---IDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV 78 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCC---CCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE
Confidence 67777665444444445555565443222111 1111222246888888862211 34555666779999999
Q ss_pred c
Q 021262 152 C 152 (315)
Q Consensus 152 ~ 152 (315)
|
T Consensus 79 C 79 (190)
T CHL00101 79 C 79 (190)
T ss_pred c
Confidence 7
No 94
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=45.75 E-value=49 Score=27.36 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=40.5
Q ss_pred HHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHhCCccccCCccCCccCc--------------ccc-ccccCCce
Q 021262 64 MAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN--------------QMQ-TSFNEPRL 125 (315)
Q Consensus 64 ~Aa~~I~~I~n~~~IlfVst---r~~~q~aV~kfA~~tga~~i~grw~pGtLTN--------------~~~-~~f~eP~l 125 (315)
.++..|..-++| +++++. |......+.+|++++|+.+++.-.-.|.|-. ... ..+.+-|+
T Consensus 3 ~~~~~L~~A~rP--~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 3 EAADLLSSAKRP--VILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHH-SSE--EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred HHHHHHHhCCCE--EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 344444443333 555654 3457889999999999887664333333332 111 12478899
Q ss_pred EEEeCCCCC
Q 021262 126 LILTDPRTD 134 (315)
Q Consensus 126 LIV~DP~~d 134 (315)
||++..+-+
T Consensus 81 vl~iG~~~~ 89 (137)
T PF00205_consen 81 VLAIGTRLS 89 (137)
T ss_dssp EEEESSSSS
T ss_pred EEEECCCCc
Confidence 999986643
No 95
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=45.54 E-value=2.5e+02 Score=26.09 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=29.5
Q ss_pred cCCceEEEeCCCC-CchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 121 NEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 121 ~eP~lLIV~DP~~-d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
+..|.||+..... ....++++...+||+|.+ |...+...+++..
T Consensus 119 ~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~ 163 (342)
T PRK10014 119 QGVDGVVIAGAAGSSDDLREMAEEKGIPVVFA-SRASYLDDVDTVR 163 (342)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEE-ecCCCCCCCCEEE
Confidence 4688888876443 346678888899999966 6544444455543
No 96
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=45.46 E-value=1.1e+02 Score=31.55 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHH-hhCCCcEEEEccCc----hhHHHHHHHHHHhCCccccCCccCCccCccc----cccccCCceEE
Q 021262 57 KTWEKLQMAARVIVA-IENPGDIIVQSARP----YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----QTSFNEPRLLI 127 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~----~~q~aV~kfA~~tga~~i~grw~pGtLTN~~----~~~f~eP~lLI 127 (315)
.....+.+|+..|.. +++..+|++++-.. .+.-++.++..+.|.. ...++|..|+--. +......++||
T Consensus 17 ~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~--~~~~ip~~~~~~~g~~~~~~~~~~~liI 94 (491)
T COG0608 17 FLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGAD--VDYYIPNRFEEGYGAIRKLKEEGADLII 94 (491)
T ss_pred HHHhhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCc--eEEEeCCCccccchHHHHHHhcCCCEEE
Confidence 456677788888775 78999999997764 2344555677778832 2234555555432 23345678999
Q ss_pred EeCCCCC-chhHHHhhhcCCCceeeccCC
Q 021262 128 LTDPRTD-HQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 128 V~DP~~d-~qaI~EAs~lnIPtIAL~DTd 155 (315)
.+|.... +..|+.++..|+-||-+ |-.
T Consensus 95 tvD~G~~~~~~i~~~~~~g~~vIVt-DHH 122 (491)
T COG0608 95 TVDNGSGSLEEIARAKELGIDVIVT-DHH 122 (491)
T ss_pred EECCCcccHHHHHHHHhCCCcEEEE-CCC
Confidence 9996554 66777888778887754 444
No 97
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=45.24 E-value=78 Score=29.37 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcc-ccccccCCceEEEeCCC-----C
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR-----T 133 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~-----~ 133 (315)
+.|..|+..+..-...-++++++..++. .-++++++..|... .-+|+|. ..+. ....++.-|++|+..-. .
T Consensus 204 ~~li~a~~~l~~~~~~~~l~ivG~g~~~-~~~~~~~~~~~~~~-~v~~~g~-~~~~~l~~~~~~ad~~v~ps~~~~~~~~ 280 (367)
T cd05844 204 LLLLEAFARLARRVPEVRLVIIGDGPLL-AALEALARALGLGG-RVTFLGA-QPHAEVRELMRRARIFLQPSVTAPSGDA 280 (367)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCchHH-HHHHHHHHHcCCCC-eEEECCC-CCHHHHHHHHHhCCEEEECcccCCCCCc
Confidence 4455555544432234567778866544 34666677655321 1134432 2221 22235667877664321 1
Q ss_pred C--chhHHHhhhcCCCceee
Q 021262 134 D--HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 134 d--~qaI~EAs~lnIPtIAL 151 (315)
+ ...+.||..+|+|+|+-
T Consensus 281 E~~~~~~~EA~a~G~PvI~s 300 (367)
T cd05844 281 EGLPVVLLEAQASGVPVVAT 300 (367)
T ss_pred cCCchHHHHHHHcCCCEEEe
Confidence 1 46789999999999974
No 98
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.13 E-value=49 Score=29.99 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEe--CCCCCchhHHHh
Q 021262 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT--DPRTDHQPIKEA 141 (315)
Q Consensus 65 Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~--DP~~d~qaI~EA 141 (315)
|.+.+..+ +.+.+|.+|+. ...+.+.+++......++...+..+ .+...++||.. |+..|.+.-++|
T Consensus 22 a~~ka~~Ll~~ga~V~VIs~--~~~~~l~~l~~~~~i~~~~~~~~~~--------~l~~adlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 22 AGRRAITLLKYGAHIVVISP--ELTENLVKLVEEGKIRWKQKEFEPS--------DIVDAFLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHHCCCeEEEEcC--CCCHHHHHHHhCCCEEEEecCCChh--------hcCCceEEEEcCCCHHHHHHHHHHH
Confidence 33444443 45667777753 2223344444432222222112221 23445776665 455556666666
Q ss_pred hhcCCCc
Q 021262 142 ALGNIPT 148 (315)
Q Consensus 142 s~lnIPt 148 (315)
..++++
T Consensus 92 -~~~~lv 97 (202)
T PRK06718 92 -PENALF 97 (202)
T ss_pred -HhCCcE
Confidence 557643
No 99
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=44.55 E-value=94 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
..|.||+.....+...++++...|+|+|.+ |.+.+-..+.+..
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~ 97 (264)
T cd06274 55 QVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPSRFPSVV 97 (264)
T ss_pred CCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCCCCCEEE
Confidence 467777776554444488888899999887 6654433345533
No 100
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=44.49 E-value=62 Score=28.61 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=36.8
Q ss_pred EEEEccCc-hhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-C---CCC---chhHHHhhhcCCCce
Q 021262 78 IIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-P---RTD---HQPIKEAALGNIPTI 149 (315)
Q Consensus 78 IlfVstr~-~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P---~~d---~qaI~EAs~lnIPtI 149 (315)
||+|.+.. +...++.-+. +.|.....-++-...+.. ..-..|+.||+.. | ..+ ...+++ ...++|++
T Consensus 2 il~id~~dsf~~nl~~~l~-~~~~~~~v~~~~~~~~~~---~~~~~~~~iilsgGP~~~~~~~~~~~~i~~-~~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFC-ELGTEVMVKRNDELQLTD---IEQLAPSHLVISPGPCTPNEAGISLAVIRH-FADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHH-HCCCcEEEEeCCCCCHHH---HHhcCCCeEEEcCCCCChHhCCCchHHHHH-hcCCCCEE
Confidence 67776654 3444555554 456544333333222221 1112588888875 2 222 234444 45689999
Q ss_pred eec
Q 021262 150 AFC 152 (315)
Q Consensus 150 AL~ 152 (315)
|||
T Consensus 77 GIC 79 (191)
T PRK06774 77 GVC 79 (191)
T ss_pred EEC
Confidence 997
No 101
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.03 E-value=69 Score=28.45 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=26.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||+..+..+...++++...|||+|.+ |.+.
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~-~~~~ 88 (265)
T cd06285 54 RRVDGLILGDARSDDHFLDELTRRGVPFVLV-LRHA 88 (265)
T ss_pred cCCCEEEEecCCCChHHHHHHHHcCCCEEEE-ccCC
Confidence 3468888877666667789999999999776 5443
No 102
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=43.96 E-value=75 Score=28.25 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCceEEEeCCC--CCchhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 122 EPRLLILTDPR--TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 122 eP~lLIV~DP~--~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
.+|.||+..+. .....++++...|||+|.+ |++.+...+.+.
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~V 98 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDSDNPKVNNT 98 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCCCCCcccee
Confidence 57888886543 2356688999999999866 554433334443
No 103
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=43.73 E-value=41 Score=30.82 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=64.2
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHhCCcccc-CCc--cCCccCccccccccCCceEEEeCCCCCchhH-H
Q 021262 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA-GRH--TPGTFTNQMQTSFNEPRLLILTDPRTDHQPI-K 139 (315)
Q Consensus 65 Aa~~I~~I-~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~-grw--~pGtLTN~~~~~f~eP~lLIV~DP~~d~qaI-~ 139 (315)
|..++..+ +.+.+|.+||.... ..+..+++..|..++. .+. -.|.||-+.. -.+++.....+.+ .
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~--~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~--------g~~~~~~~K~~~l~~ 151 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFT--FLVEPIAERLGIDYVVANELEIDDGKLTGRVV--------GPICDGEGKAKALRE 151 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChH--HHHHHHHHHhCCchheeeEEEEeCCEEeceee--------eeecCcchHHHHHHH
Confidence 45555555 67888999988865 6788999999986533 222 1133443321 1233433334555 4
Q ss_pred HhhhcCCC---ceeeccCCCCCC---cceEEecCCCCCc
Q 021262 140 EAALGNIP---TIAFCDTDSPMR---YVDIGIPANNKGK 172 (315)
Q Consensus 140 EAs~lnIP---tIAL~DTds~~~---~VD~pIP~Nnds~ 172 (315)
=++..|++ ++|.-|+.+|+. .++.+|-.|-+..
T Consensus 152 ~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~~ 190 (212)
T COG0560 152 LAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPKPK 190 (212)
T ss_pred HHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcCHH
Confidence 45667999 999999998875 4889999987743
No 104
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=43.45 E-value=1.5e+02 Score=31.23 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCccccc---------------ccc
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT---------------SFN 121 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~---------------~f~ 121 (315)
+.|.+|+.+|..-++| +++++.. ....+.+.+||+++|+..++.-.--|.+-..-.. ...
T Consensus 188 ~~i~~aa~~L~~AkrP--vIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 188 EAIRKAAELLAEAKRP--VILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhh
Confidence 7788888888776555 6666553 2345789999999998876654444554332211 136
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCC-ceeeccCC----CCCCcceEEecCC
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIP-TIAFCDTD----SPMRYVDIGIPAN 168 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIP-tIAL~DTd----s~~~~VD~pIP~N 168 (315)
+-|||+++..+-+-..-. -+....| .|-=+|.| .-.-.+|++|-++
T Consensus 266 ~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD 316 (550)
T COG0028 266 EADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316 (550)
T ss_pred cCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEecc
Confidence 789999998766622211 1111222 13333444 2223488888775
No 105
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=43.07 E-value=93 Score=30.47 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcc------------ccccccCCceE
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ------------MQTSFNEPRLL 126 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~------------~~~~f~eP~lL 126 (315)
.+.|..|++.+..-...-++++++..+.-...+++.++..|-.. .+|++|...+. ...-++.-|++
T Consensus 246 ~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~--~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~ 323 (425)
T PRK05749 246 EELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSY--VRRSQGEPPSADTDVLLGDTMGELGLLYAIADIA 323 (425)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcE--EEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEE
Confidence 34455555544322122345566665543345777777777553 34555543321 11124566776
Q ss_pred EEeCCC--CCchhHHHhhhcCCCceee
Q 021262 127 ILTDPR--TDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 127 IV~DP~--~d~qaI~EAs~lnIPtIAL 151 (315)
|+.-.. .--+.+-||..+|+|+|+-
T Consensus 324 ~v~~S~~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 324 FVGGSLVKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred EECCCcCCCCCCCHHHHHHhCCCEEEC
Confidence 764322 2345688999999999974
No 106
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=43.03 E-value=1.9e+02 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=26.8
Q ss_pred cccCCceEEEeCCCCC-chhHHHhhhcCCCceeeccCCCCCCcc
Q 021262 119 SFNEPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (315)
Q Consensus 119 ~f~eP~lLIV~DP~~d-~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (315)
-++.-|++|+..-... ...+-||...|+|+|+- |.....+++
T Consensus 260 ~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s-~~~~~~~~i 302 (359)
T cd03808 260 LLAAADVFVLPSYREGLPRVLLEAMAMGRPVIAT-DVPGCREAV 302 (359)
T ss_pred HHHhccEEEecCcccCcchHHHHHHHcCCCEEEe-cCCCchhhh
Confidence 3566777766543311 45788999999999983 444333433
No 107
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=43.00 E-value=86 Score=29.50 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCC-CCc
Q 021262 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TDH 135 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~-~d~ 135 (315)
|-...|..|+..+..-....++.+++....... +.+..+..+..- .-++. | +......-++.-+++|.+.-. .-.
T Consensus 217 K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~-~~~~~~~~~~~~-~v~~~-g-~~~~~~~~~~~ad~~v~~S~~Eg~~ 292 (372)
T cd04949 217 KQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEK-LKELIEELGLED-YVFLK-G-YTRDLDEVYQKAQLSLLTSQSEGFG 292 (372)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHH-HHHHHHHcCCcc-eEEEc-C-CCCCHHHHHhhhhEEEecccccccC
Confidence 334444444444433222345666776554332 344444444321 11233 3 344444446777887777642 225
Q ss_pred hhHHHhhhcCCCceee
Q 021262 136 QPIKEAALGNIPTIAF 151 (315)
Q Consensus 136 qaI~EAs~lnIPtIAL 151 (315)
.++.||...|+|+|+.
T Consensus 293 ~~~lEAma~G~PvI~~ 308 (372)
T cd04949 293 LSLMEALSHGLPVISY 308 (372)
T ss_pred hHHHHHHhCCCCEEEe
Confidence 6889999999999984
No 108
>PLN02335 anthranilate synthase
Probab=42.95 E-value=52 Score=30.31 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=40.9
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-CCCC---chhHHHhhh--cCC
Q 021262 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRTD---HQPIKEAAL--GNI 146 (315)
Q Consensus 73 ~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~~d---~qaI~EAs~--lnI 146 (315)
....+|++|........-+....+..|.....-++-...+ ....-..|+.||+.. |..- -..++.... .++
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~---~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~ 92 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTV---EELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLV 92 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCH---HHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCC
Confidence 4567899997655444445555555677654444422111 111113478888885 3321 122333323 358
Q ss_pred Cceeec
Q 021262 147 PTIAFC 152 (315)
Q Consensus 147 PtIAL~ 152 (315)
|+.|+|
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 998887
No 109
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=42.23 E-value=95 Score=29.57 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHh-CCccccCCccCCccCccccccccCCceEEEeCCCCCchh
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQP 137 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~t-ga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~qa 137 (315)
...+..|+..+..-...-.+++++..+.....+++..+.. |.. .++..|.+ ...+..-|++|+.. ....
T Consensus 204 ~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~----~~~~~~aDl~v~~s---G~~~ 273 (380)
T PRK00025 204 LPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLLDGQK----REAMAAADAALAAS---GTVT 273 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEEcccH----HHHHHhCCEEEECc---cHHH
Confidence 4445555554432211234555554333334455555444 321 12233322 22245557777632 3444
Q ss_pred HHHhhhcCCCceeeccC
Q 021262 138 IKEAALGNIPTIAFCDT 154 (315)
Q Consensus 138 I~EAs~lnIPtIAL~DT 154 (315)
+ ||..+|+|+|.+...
T Consensus 274 l-Ea~a~G~PvI~~~~~ 289 (380)
T PRK00025 274 L-ELALLKVPMVVGYKV 289 (380)
T ss_pred H-HHHHhCCCEEEEEcc
Confidence 4 999999999988644
No 110
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=41.98 E-value=3.2e+02 Score=27.06 Aligned_cols=112 Identities=10% Similarity=0.062 Sum_probs=58.6
Q ss_pred CCcEEEEccCc--hhHHHHHHHHHH-hCCccccCCccCCccCccccccc--cCCceEEEeCCCCC----chhHHHhhhc-
Q 021262 75 PGDIIVQSARP--YGQRAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSF--NEPRLLILTDPRTD----HQPIKEAALG- 144 (315)
Q Consensus 75 ~~~IlfVstr~--~~q~aV~kfA~~-tga~~i~grw~pGtLTN~~~~~f--~eP~lLIV~DP~~d----~qaI~EAs~l- 144 (315)
..+|+|+++.. +.-...+.+.++ +|..... ..+..|.......+ ....|+|.+...-+ ..|++.|+..
T Consensus 42 ~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~--~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~ 119 (372)
T TIGR02815 42 NLRIVLTGAGTSAFIGDALAPWLASHTGLNVSA--VPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQLL 119 (372)
T ss_pred CCEEEEEechHHHHHHHHHHHHHHHhcCCCEEE--EeCcccccccccccCCCCCeEEEEEeCCcCcHHHHHHHHHHHHhC
Confidence 45788986653 333333444444 3333211 23444332111111 12356666665444 4577888887
Q ss_pred -CCCceeeccC-CCCCC-cce-----EEecCC----CCCcchHH-HHHHHHHHHHHH
Q 021262 145 -NIPTIAFCDT-DSPMR-YVD-----IGIPAN----NKGKHSIG-CLFWLLARMVLQ 188 (315)
Q Consensus 145 -nIPtIAL~DT-ds~~~-~VD-----~pIP~N----nds~~SI~-li~~lLaraVl~ 188 (315)
|+++|+|++. +|++. ..| +.|+++ .+|..+.. |...+++-..+.
T Consensus 120 ~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~e~gva~Tksft~~l~al~~l~ 176 (372)
T TIGR02815 120 PECYHLVLTCNEEGALYRNAINRSNAFALLMPAESNDRSFAMTSSFSCMTLATLAVL 176 (372)
T ss_pred CCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCccceeeeHHHHHHHHHHHHHHH
Confidence 8999999875 55553 355 556644 35555443 444445444443
No 111
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=41.79 E-value=2.4e+02 Score=29.76 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=57.9
Q ss_pred eeeecCCccccCHHHHHHHHHHHHHHHHHh-h--CCCcEEEEc-cCc--hhHHHHHHHHHH-hCCccccCCcc----CC-
Q 021262 43 FKRRNDGIYIINLGKTWEKLQMAARVIVAI-E--NPGDIIVQS-ARP--YGQRAVLKFAKY-THAHAIAGRHT----PG- 110 (315)
Q Consensus 43 yg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~--n~~~IlfVs-tr~--~~q~aV~kfA~~-tga~~i~grw~----pG- 110 (315)
++|++++..-|..++.+. .++..|..+ + .+..|.++. .+. ....++.+|+.. .|...+..+.. ++
T Consensus 58 ~~R~~g~~~~isWdeAl~---~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 134 (671)
T TIGR01591 58 LIREGDKFREVSWDEAIS---YIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSV 134 (671)
T ss_pred eEcCCCCEEEccHHHHHH---HHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhh
Confidence 344443445566655544 444455554 2 355676654 332 234567889886 78655433211 11
Q ss_pred --------c-cCccccccccCCceEEEe--CCCCCc----hhHHHhhhcCCCceee
Q 021262 111 --------T-FTNQMQTSFNEPRLLILT--DPRTDH----QPIKEAALGNIPTIAF 151 (315)
Q Consensus 111 --------t-LTN~~~~~f~eP~lLIV~--DP~~d~----qaI~EAs~lnIPtIAL 151 (315)
. ..+.....+..-|+||+. ||...+ ..|++|.+-|..+|.|
T Consensus 135 ~~~~~~~G~~~~~~~~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvi 190 (671)
T TIGR01591 135 AGLKQTVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVI 190 (671)
T ss_pred HHHHHhhCCCCCCCCHHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEE
Confidence 0 000011124667888888 565553 4568898889888877
No 112
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.27 E-value=71 Score=28.45 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=24.3
Q ss_pred cCCceEEEeCCCC-----CchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRT-----DHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~-----d~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||++.+.. ....+.++...|||+|.+ |++.
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~ 93 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRA 93 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCC
Confidence 3578888875432 234588998999999987 5544
No 113
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=41.20 E-value=58 Score=28.95 Aligned_cols=30 Identities=23% Similarity=0.669 Sum_probs=20.3
Q ss_pred CCceEEEeC-C---CC---CchhHHHhhhcCCCceeec
Q 021262 122 EPRLLILTD-P---RT---DHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 122 eP~lLIV~D-P---~~---d~qaI~EAs~lnIPtIAL~ 152 (315)
.||.||++. | .. +...++++ ..++|++|+|
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC 79 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVC 79 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEEC
Confidence 478888775 3 11 23466666 6699999997
No 114
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=41.04 E-value=72 Score=27.84 Aligned_cols=33 Identities=0% Similarity=0.047 Sum_probs=21.4
Q ss_pred CCceEEEeCCCCCchhHHHhhhcC----CCceeeccC
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGN----IPTIAFCDT 154 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~ln----IPtIAL~DT 154 (315)
.|+.|++.+...-.-+++.+...| +.+|++.|+
T Consensus 181 ~~~~i~~~~d~~a~~~~~~l~~~g~~~~i~ivg~d~~ 217 (267)
T cd01536 181 DIDAIFAANDSMALGAVAALKAAGRKGDVKIVGVDGS 217 (267)
T ss_pred CccEEEEecCCchHHHHHHHHhcCCCCCceEEecCCC
Confidence 367788887555555666666665 667777665
No 115
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=40.94 E-value=2e+02 Score=28.02 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=65.7
Q ss_pred ceeeecCCccccCHHHHHHHHHHHHHHHHHh--hCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcccccc
Q 021262 42 VFKRRNDGIYIINLGKTWEKLQMAARVIVAI--ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS 119 (315)
Q Consensus 42 Iyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I--~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~ 119 (315)
+.|-- ++.|.+|-... .+| +..|..+ .+++.+++..||.+...+...+.+..+...-...| .|+=-|++...
T Consensus 152 LIGG~-s~~~~~~~~~~-~~l---~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~-~~~~~nPy~~~ 225 (311)
T PF06258_consen 152 LIGGD-SKHYRWDEEDA-ERL---LDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIW-DGTGENPYLGF 225 (311)
T ss_pred EECcC-CCCcccCHHHH-HHH---HHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEe-cCCCCCcHHHH
Confidence 44443 36666776533 222 2233332 35578999999988887777777776533322234 66667776665
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 120 f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
+..-|.+|||--. ..=|.||...|-||.-|
T Consensus 226 La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 226 LAAADAIVVTEDS--VSMVSEAAATGKPVYVL 255 (311)
T ss_pred HHhCCEEEEcCcc--HHHHHHHHHcCCCEEEe
Confidence 6777889988533 35689999999998765
No 116
>PLN02846 digalactosyldiacylglycerol synthase
Probab=40.64 E-value=71 Score=33.02 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCC
Q 021262 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (315)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~ 133 (315)
.-+|=+..|..|+..|..-...-+++++|..+.-.+ +++.++..|.. .++..|. .+.. .-+.--|+.|.... .
T Consensus 238 ~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~-L~~~a~~l~l~---~~vf~G~-~~~~-~~~~~~DvFv~pS~-~ 310 (462)
T PLN02846 238 VWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDE-VKAAAEKLELD---VRVYPGR-DHAD-PLFHDYKVFLNPST-T 310 (462)
T ss_pred cccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHH-HHHHHHhcCCc---EEEECCC-CCHH-HHHHhCCEEEECCC-c
Confidence 445556667777665544223356778888877654 67777776632 3455664 2322 22333376555553 4
Q ss_pred C--chhHHHhhhcCCCceeec
Q 021262 134 D--HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 134 d--~qaI~EAs~lnIPtIAL~ 152 (315)
| -..+.||.-+|+|+|+.=
T Consensus 311 Et~g~v~lEAmA~G~PVVa~~ 331 (462)
T PLN02846 311 DVVCTTTAEALAMGKIVVCAN 331 (462)
T ss_pred ccchHHHHHHHHcCCcEEEec
Confidence 4 456789999999999983
No 117
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=40.06 E-value=60 Score=30.41 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCC-ccccCCccCCccCccccc----cccCCceEEE--eCCCCCchhHHHhhhcCCCceeeccCCCCC
Q 021262 88 QRAVLKFAKYTHA-HAIAGRHTPGTFTNQMQT----SFNEPRLLIL--TDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (315)
Q Consensus 88 q~aV~kfA~~tga-~~i~grw~pGtLTN~~~~----~f~eP~lLIV--~DP~~d~qaI~EAs~lnIPtIAL~DTds~~ 158 (315)
.+.+++.++..|. ..+....-.+....|.+. --+.+|.|+| .|+..=..+|++|...|||||.+ |++.+.
T Consensus 52 ~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~-d~~~~~ 128 (322)
T COG1879 52 RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTV-DSDIPG 128 (322)
T ss_pred HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEE-ecCCCC
Confidence 4556777888786 221111111222222211 1278999988 46666678999999999999998 444443
No 118
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=39.88 E-value=1.5e+02 Score=28.59 Aligned_cols=102 Identities=9% Similarity=0.074 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCc------------hhHHHHHHHHHHhCCccccCCccCCccCc-cccccccC
Q 021262 56 GKTWEKLQMAARVIVAIENPGDIIVQSARP------------YGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNE 122 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~------------~~q~aV~kfA~~tga~~i~grw~pGtLTN-~~~~~f~e 122 (315)
.|=++.|.+|+..+..-...-++++||... +.++.+.++....+...| .|+ |.... .....+..
T Consensus 224 ~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V--~f~-G~v~~~~~~~~l~~ 300 (396)
T cd03818 224 YRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRV--HFL-GRVPYDQYLALLQV 300 (396)
T ss_pred ccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceE--EEe-CCCCHHHHHHHHHh
Confidence 344555666666554433345677787521 122333333322122111 244 33322 11122455
Q ss_pred CceEEEeC-CCCCchhHHHhhhcCCCceeeccCCCCCCcc
Q 021262 123 PRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPMRYV 161 (315)
Q Consensus 123 P~lLIV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (315)
-|++|+.. +..-...+-||..+|.|+|+- |.....+.|
T Consensus 301 adv~v~~s~~e~~~~~llEAmA~G~PVIas-~~~g~~e~i 339 (396)
T cd03818 301 SDVHVYLTYPFVLSWSLLEAMACGCLVVGS-DTAPVREVI 339 (396)
T ss_pred CcEEEEcCcccccchHHHHHHHCCCCEEEc-CCCCchhhc
Confidence 67766554 222234789999999999983 544444443
No 119
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=39.53 E-value=76 Score=28.24 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=25.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.+|++....+...++++...|||+|.+ |++.
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 88 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHI 88 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccC
Confidence 4678888876543433488988899999888 5544
No 120
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=39.53 E-value=65 Score=34.58 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=56.4
Q ss_pred ceEEEeCCCCC----chhHHHhhhcCCCceeeccCCCC-C-CcceEEecC---------CCCCcchHHHHHHHHHHHHHH
Q 021262 124 RLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSP-M-RYVDIGIPA---------NNKGKHSIGCLFWLLARMVLQ 188 (315)
Q Consensus 124 ~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~-~-~~VD~pIP~---------Nnds~~SI~li~~lLaraVl~ 188 (315)
+|+|.+.+.-+ ..|+++|+..|.++++|||..-+ + +-.|+.++- -.|+..|--+.+.+|+-.+-+
T Consensus 332 ~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~ 411 (597)
T COG0449 332 TLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAK 411 (597)
T ss_pred cEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhH
Confidence 56666665444 67999999999999999987443 2 347777664 457777888889999999999
Q ss_pred hhcCCCCCC
Q 021262 189 MRGTIRPGH 197 (315)
Q Consensus 189 ~rg~i~~~~ 197 (315)
.+|+++.+.
T Consensus 412 ~~g~i~~~~ 420 (597)
T COG0449 412 QRGTISEEE 420 (597)
T ss_pred hhCccchhH
Confidence 999887544
No 121
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=39.49 E-value=80 Score=28.97 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~---~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d- 134 (315)
.+.|..|++.+.....+-+++++|..+. ....+.+.++..+..- +=+|+|. .+.....++.-|++|+...+.+
T Consensus 200 ~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~ 276 (355)
T cd03819 200 QEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGH--CSDMPAAYALADIVVSASTEPEA 276 (355)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCC--cccHHHHHHhCCEEEecCCCCCC
Confidence 3444444444443223456777776543 2233444555544321 1124443 2223334567788877653333
Q ss_pred -chhHHHhhhcCCCceeeccCCCCCC
Q 021262 135 -HQPIKEAALGNIPTIAFCDTDSPMR 159 (315)
Q Consensus 135 -~qaI~EAs~lnIPtIAL~DTds~~~ 159 (315)
...+.||..+|+|+|+- |.....+
T Consensus 277 ~~~~l~EA~a~G~PvI~~-~~~~~~e 301 (355)
T cd03819 277 FGRTAVEAQAMGRPVIAS-DHGGARE 301 (355)
T ss_pred CchHHHHHHhcCCCEEEc-CCCCcHH
Confidence 46889999999999975 4433333
No 122
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=39.41 E-value=62 Score=24.25 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcccc
Q 021262 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (315)
Q Consensus 65 Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~ 104 (315)
+.+.+..+..+..+.++.+.+...+-|.++++..|...+.
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLA 55 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEE
Confidence 3444455555555677788888889999999999988753
No 123
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=39.06 E-value=78 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=25.8
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCC
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (315)
.+|.||+.....+...+++....+||+|.+ |++.+
T Consensus 51 ~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 85 (261)
T cd06272 51 RFDGVIIFGESASDVEYLYKIKLAIPVVSY-GVDYD 85 (261)
T ss_pred CcCEEEEeCCCCChHHHHHHHHcCCCEEEE-cccCC
Confidence 478888887665656678888889999966 65543
No 124
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.82 E-value=76 Score=28.25 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=27.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceE
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDI 163 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~ 163 (315)
+..|.||+..... ...+.++...|||+|. +|.+.+...+.+
T Consensus 57 ~~vdgiii~~~~~-~~~~~~l~~~~ipvV~-~~~~~~~~~~~~ 97 (268)
T cd06277 57 GKVDGIILLGGIS-TEYIKEIKELGIPFVL-VDHYIPNEKADC 97 (268)
T ss_pred CCCCEEEEeCCCC-hHHHHHHhhcCCCEEE-EccCCCCCCCCE
Confidence 3568888766443 3457888888999995 576655444444
No 125
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=38.78 E-value=1.2e+02 Score=27.78 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC--ch
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--HQ 136 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d--~q 136 (315)
.+.|..|++.+..-...-.++++|..+... .+++.++..|..- .-+|+|. .+....-++.-|++|+..- .+ ..
T Consensus 207 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~-~~~~~~~~~~~~~-~v~~~g~--~~~~~~~~~~adi~v~ps~-~E~~~~ 281 (358)
T cd03812 207 HEFLIEIFAELLKKNPNAKLLLVGDGELEE-EIKKKVKELGLED-KVIFLGV--RNDVPELLQAMDVFLFPSL-YEGLPL 281 (358)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCCchHH-HHHHHHHhcCCCC-cEEEecc--cCCHHHHHHhcCEEEeccc-ccCCCH
Confidence 344555555554322345677788766543 3455555444321 1134443 3333344567787776642 23 45
Q ss_pred hHHHhhhcCCCceee
Q 021262 137 PIKEAALGNIPTIAF 151 (315)
Q Consensus 137 aI~EAs~lnIPtIAL 151 (315)
.+.||..+|.|+|+-
T Consensus 282 ~~lEAma~G~PvI~s 296 (358)
T cd03812 282 VLIEAQASGLPCILS 296 (358)
T ss_pred HHHHHHHhCCCEEEE
Confidence 678999999999984
No 126
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=38.60 E-value=40 Score=30.25 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhh-C--CCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcccc--ccccCCceEEEeCCCCCch
Q 021262 62 LQMAARVIVAIE-N--PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--TSFNEPRLLILTDPRTDHQ 136 (315)
Q Consensus 62 L~~Aa~~I~~I~-n--~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~--~~f~eP~lLIV~DP~~d~q 136 (315)
+..+..+|.++. + +..|++..+.+.+.+.+.+.... .+...+.|=-+--... .+...|+++|++...-=-.
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~----~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPn 109 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD----RVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPN 109 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG----G-SEEE---SSHHHHHHHHHHH--SEEEEES----HH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC----CeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHH
Confidence 345666677773 2 44566666667777655433210 1222234421111001 1236899999999777778
Q ss_pred hHHHhhhcCCCceee
Q 021262 137 PIKEAALGNIPTIAF 151 (315)
Q Consensus 137 aI~EAs~lnIPtIAL 151 (315)
-|++|.+.|||++-+
T Consensus 110 ll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 110 LLREAKRRGIPVVLV 124 (186)
T ss_dssp HHHH-----S-EEEE
T ss_pred HHHHHhhcCCCEEEE
Confidence 999999999999754
No 127
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=38.46 E-value=39 Score=30.21 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=27.2
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCCCCcceEE
Q 021262 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (315)
Q Consensus 122 eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (315)
.+|.||+.....+ ...+.++...|||+|.+ |++.+...+.+.
T Consensus 60 ~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~~~~~~~~~v 103 (272)
T cd06300 60 GVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGTVTTPCAYNV 103 (272)
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecCCCCCceeEe
Confidence 5788888664433 34678888899999988 444332334443
No 128
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=38.26 E-value=70 Score=28.67 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCceeec
Q 021262 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 122 eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~ 152 (315)
..|.||+.....+ ...++++.+.|||+|.+-
T Consensus 58 ~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~~ 90 (275)
T cd06307 58 RSDGVALVAPDHPQVRAAVARLAAAGVPVVTLV 90 (275)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 5788887765433 256889889999999774
No 129
>PRK05858 hypothetical protein; Provisional
Probab=37.23 E-value=1.3e+02 Score=31.07 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCcccc--------ccccCCceEEEe
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILT 129 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~--------~~f~eP~lLIV~ 129 (315)
.+..++..|..-++ -+++++. + ....+.+.+||+++|...++.---.|.|-..-- ..+++.|+||++
T Consensus 192 ~i~~~~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~v 269 (542)
T PRK05858 192 ALARAAGLLAEAQR--PVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVV 269 (542)
T ss_pred HHHHHHHHHHhCCC--cEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEE
Confidence 35555555554333 3666664 2 346788999999999877654333455554221 125799999999
Q ss_pred CCCCC
Q 021262 130 DPRTD 134 (315)
Q Consensus 130 DP~~d 134 (315)
+.+.+
T Consensus 270 G~~~~ 274 (542)
T PRK05858 270 GVPMD 274 (542)
T ss_pred CCCCc
Confidence 97655
No 130
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=37.12 E-value=1e+02 Score=27.68 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=38.5
Q ss_pred EEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-CCCC------chhHHHhhhcCCCcee
Q 021262 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRTD------HQPIKEAALGNIPTIA 150 (315)
Q Consensus 78 IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~~d------~qaI~EAs~lnIPtIA 150 (315)
||+|.+......-+..+.++.|.....-|+....+ .......||.||+.. |..- ...++ ....++|++|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~---~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~-~~~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTI---SDIENMKPDFLMISPGPCSPNEAGISMEVIR-YFAGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCH---HHHhhCCCCEEEECCCCCChHhCCCchHHHH-HhcCCCCEEE
Confidence 78887765544445555555676554444332221 111223589888886 3221 22233 3345889999
Q ss_pred ec
Q 021262 151 FC 152 (315)
Q Consensus 151 L~ 152 (315)
||
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 87
No 131
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.11 E-value=82 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=24.5
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCceeec
Q 021262 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 120 f~eP~lLIV~DP~~d----~qaI~EAs~lnIPtIAL~ 152 (315)
+.+=|++|++..... ..++++++..|.++|+|+
T Consensus 45 ~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 45 LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 345577777764433 456789999999999998
No 132
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=36.95 E-value=66 Score=25.04 Aligned_cols=41 Identities=12% Similarity=0.357 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcccc
Q 021262 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (315)
Q Consensus 64 ~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~ 104 (315)
++.+.+..++.+..+.++.+.+...+-|..+|+.+|..++.
T Consensus 25 ~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 25 MVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred HHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 34444555655666778888888999999999999988764
No 133
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=36.19 E-value=1.1e+02 Score=27.24 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=22.9
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeec
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~ 152 (315)
+.+|.||+.....+ ...++++...|||+|.+-
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 55 QGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLD 88 (270)
T ss_pred hCCCEEEEecCchhhchHHHHHHHHCCCCEEEeC
Confidence 35788887754433 356788888999999663
No 134
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.10 E-value=59 Score=29.50 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=28.1
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEe
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (315)
.+|-+|++....+...++++...|||+|.+ |++.+ ..+++.-
T Consensus 56 ~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~v~ 97 (283)
T cd06279 56 LVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP-PGVPSVG 97 (283)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC-CCCCEEe
Confidence 467777765444446789999999999866 66554 3344443
No 135
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=36.03 E-value=98 Score=27.90 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=22.9
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCceee
Q 021262 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAF 151 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~q-aI~EAs~lnIPtIAL 151 (315)
+.+|.||+.....+.. .++++...|||+|.+
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~ 87 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIAL 87 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEe
Confidence 4578888775443332 488999999999988
No 136
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.97 E-value=16 Score=35.94 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=29.3
Q ss_pred ccccCCccCC--ccCccccccccCCceEEEeCCCCCchhHHHhhhcCC
Q 021262 101 HAIAGRHTPG--TFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNI 146 (315)
Q Consensus 101 ~~i~grw~pG--tLTN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnI 146 (315)
++--|||+.| .-|-....+|++|=+-||+||..- -||-++||
T Consensus 140 HPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rt----lsagkv~i 183 (347)
T KOG1554|consen 140 HPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRT----LSAGKVNI 183 (347)
T ss_pred CCCCCccccCcchhHHHHhhhhcCCeEEEEecCccc----cccCceee
Confidence 4445899999 344333456999999999999765 25555554
No 137
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.95 E-value=72 Score=32.81 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHHHHHHh--hCCC-cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccc----cccCCce
Q 021262 53 INLGKTWEKLQMAARVIVAI--ENPG-DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRL 125 (315)
Q Consensus 53 INL~kT~ekL~~Aa~~I~~I--~n~~-~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~----~f~eP~l 125 (315)
-....|. .+.-+|.++ +.|+ .|++.+.-+++.+.+. +..|.. +..+++| +-|..-. .+..|++
T Consensus 57 aSVGEv~----a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~---~~~~~~-v~h~YlP--~D~~~~v~rFl~~~~P~l 126 (419)
T COG1519 57 ASVGEVL----AALPLVRALRERFPDLRILVTTMTPTGAERAA---ALFGDS-VIHQYLP--LDLPIAVRRFLRKWRPKL 126 (419)
T ss_pred cchhHHH----HHHHHHHHHHHhCCCCCEEEEecCccHHHHHH---HHcCCC-eEEEecC--cCchHHHHHHHHhcCCCE
Confidence 4455553 344556666 2333 5666665677765443 333333 5556666 2222222 2479999
Q ss_pred EEEeCCCCCchhHHHhhhcCCCceee
Q 021262 126 LILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 126 LIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
+|++...-=-.-|.||.+.|||++=+
T Consensus 127 ~Ii~EtElWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 127 LIIMETELWPNLINELKRRGIPLVLV 152 (419)
T ss_pred EEEEeccccHHHHHHHHHcCCCEEEE
Confidence 99998666678899999999999743
No 138
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=35.22 E-value=1.3e+02 Score=29.20 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCc-cccccccCCceEEEeCCC
Q 021262 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPR 132 (315)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN-~~~~~f~eP~lLIV~DP~ 132 (315)
+-.|=.+.|..|++.+..-...-.+++++..+. ...+++..++.|..- .=+|+ |.+++ .....+..-|++++..-.
T Consensus 203 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~-~v~~~-G~~~~~~~~~~l~~ad~~v~pS~~ 279 (398)
T cd03796 203 VYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK-RILLEEMREKYNLQD-RVELL-GAVPHERVRDVLVQGHIFLNTSLT 279 (398)
T ss_pred chhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch-HHHHHHHHHHhCCCC-eEEEe-CCCCHHHHHHHHHhCCEEEeCChh
Confidence 344445556666665544323456677776553 334556666655321 01233 44443 223334566777665432
Q ss_pred CC-chhHHHhhhcCCCcee
Q 021262 133 TD-HQPIKEAALGNIPTIA 150 (315)
Q Consensus 133 ~d-~qaI~EAs~lnIPtIA 150 (315)
+. ...+.||..+|.|+|+
T Consensus 280 E~~g~~~~EAma~G~PVI~ 298 (398)
T cd03796 280 EAFCIAIVEAASCGLLVVS 298 (398)
T ss_pred hccCHHHHHHHHcCCCEEE
Confidence 11 3578899999999988
No 139
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=34.89 E-value=1.5e+02 Score=30.72 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCcccc---------------ccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------------~~f~e 122 (315)
.+..++..|.+-++| +++++. + ......+.+||+++|+..++.-.-.|.|-.... ..+++
T Consensus 196 ~i~~~a~~L~~AkrP--vil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~ 273 (561)
T PRK06048 196 QIKRAAELIMKAERP--IIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQE 273 (561)
T ss_pred HHHHHHHHHHhCCCC--EEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHHHh
Confidence 466666666654443 555543 3 246788999999999987765444454432210 12478
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+|+++..+-+
T Consensus 274 aD~vl~lG~~~~ 285 (561)
T PRK06048 274 SDLIIAVGARFD 285 (561)
T ss_pred CCEEEEECCCCC
Confidence 999999997654
No 140
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=34.85 E-value=74 Score=32.47 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcc
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA 102 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~ 102 (315)
+.|.+|+.+++.-++|--.-.-+|....|++-.+.++++|+..
T Consensus 67 eAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gavi 109 (429)
T COG1029 67 EAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVI 109 (429)
T ss_pred HHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEe
Confidence 5577899999887777544345667789999999999999764
No 141
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.81 E-value=1.3e+02 Score=26.80 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=24.3
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTd 155 (315)
+.+|.||+.....+ ...++++...|||+|.+ |++
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~-d~~ 94 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKKAGIFVVVV-DRG 94 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEE-cCC
Confidence 45788888743333 36788999999999987 444
No 142
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=34.35 E-value=1.3e+02 Score=27.93 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=25.3
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||+.....+ ...++++...|||+|.+ |+..
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~-d~~~ 89 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY-DRLI 89 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe-cCcC
Confidence 45788888754333 56788999999999977 5554
No 143
>PRK10637 cysG siroheme synthase; Provisional
Probab=34.31 E-value=74 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=19.3
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCce
Q 021262 123 PRLLILT--DPRTDHQPIKEAALGNIPTI 149 (315)
Q Consensus 123 P~lLIV~--DP~~d~qaI~EAs~lnIPtI 149 (315)
.+++|+. |+..|++..++|...||++-
T Consensus 73 ~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 73 CWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred CEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 3454443 56777888899999998753
No 144
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=34.30 E-value=1.5e+02 Score=26.63 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCcc-ccccccCCceEEEeCCCCC-chhHHHhhhcCCCceee
Q 021262 75 PGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD-HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 75 ~~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~~d-~qaI~EAs~lnIPtIAL 151 (315)
.-+++++|.... ....++..++..+... +=+|+ |..... ...-++.-|++|+..-... ...+-||..+|+|+|+-
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~-~v~~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGLED-RVTFT-GMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCccc-eEEEc-CCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 445667776543 2333333334444321 01232 333321 1122456677766543211 45788999999999984
No 145
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=34.23 E-value=2.8e+02 Score=25.00 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=47.1
Q ss_pred EEEEccC----chhHHHHHHHHHHhCCccccCCcc------CCccCc---------cccc----cc---cCCceEEEeCC
Q 021262 78 IIVQSAR----PYGQRAVLKFAKYTHAHAIAGRHT------PGTFTN---------QMQT----SF---NEPRLLILTDP 131 (315)
Q Consensus 78 IlfVstr----~~~q~aV~kfA~~tga~~i~grw~------pGtLTN---------~~~~----~f---~eP~lLIV~DP 131 (315)
+++++.. ....+.+.+|+++.|...++.-.. -|.+.+ .-+. .+ ..-|+||++..
T Consensus 38 lIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG~ 117 (171)
T PRK00945 38 LLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFIGV 117 (171)
T ss_pred EEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEecC
Confidence 6666652 345677899999999876553221 122222 2111 12 58899999986
Q ss_pred CCCc--hhHHHhh-hcCCCceeeccCCC
Q 021262 132 RTDH--QPIKEAA-LGNIPTIAFCDTDS 156 (315)
Q Consensus 132 ~~d~--qaI~EAs-~lnIPtIAL~DTds 156 (315)
+... |.|.--+ ..++-+|+||.--.
T Consensus 118 ~~~~~~~~l~~lk~f~~~~~~~~~~~y~ 145 (171)
T PRK00945 118 TYYYASQGLSALKHFSPLKTITIDRYYH 145 (171)
T ss_pred CchhHHHHHHHHhhcCCceEEEecCCcC
Confidence 6652 3333333 34689999996543
No 146
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.96 E-value=1.5e+02 Score=26.13 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
+.+|-||++....+...++.+...|||+|.+-+..
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~ 88 (268)
T cd01575 54 RRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLP 88 (268)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEecCC
Confidence 35788888776555567788888899999986543
No 147
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=33.61 E-value=78 Score=23.62 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccC
Q 021262 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (315)
Q Consensus 64 ~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLT 113 (315)
++.+.+..++.+..+.++.+.+...+-|.++++..|...+.-.=-+|.++
T Consensus 15 ~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd03423 15 MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQETEDEPYR 64 (69)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEEcCCEEE
Confidence 44455556655566677788888888999999999988754221345443
No 148
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.47 E-value=1.1e+02 Score=27.11 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=22.9
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCceeeccC
Q 021262 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 121 ~eP~lLIV~DP~~------------d~qaI~EAs~lnIPtIAL~DT 154 (315)
..+|+||+..+.. -...|+++...++|++++|=-
T Consensus 36 ~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 36 AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 4567776654322 135677877889999999853
No 149
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.39 E-value=1.9e+02 Score=30.00 Aligned_cols=74 Identities=11% Similarity=0.206 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCccc--------------c-ccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM--------------Q-TSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~--------------~-~~f~e 122 (315)
.+..++..|..-++ -+++++. + ......+.+|++++|+..++.----|.|-..- . ..+++
T Consensus 195 ~i~~~~~~l~~A~r--Pvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~ 272 (574)
T PRK06882 195 QIKKALKALLVAKK--PVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHE 272 (574)
T ss_pred HHHHHHHHHHhCCC--CEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHHHh
Confidence 35555555554333 3666664 2 34678899999999997765422223333211 1 13579
Q ss_pred CceEEEeCCCCCch
Q 021262 123 PRLLILTDPRTDHQ 136 (315)
Q Consensus 123 P~lLIV~DP~~d~q 136 (315)
.|+||++..+-+..
T Consensus 273 aDlvl~lG~~~~~~ 286 (574)
T PRK06882 273 SDLILGIGVRFDDR 286 (574)
T ss_pred CCEEEEECCCCCcc
Confidence 99999999876543
No 150
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=33.36 E-value=2e+02 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.6
Q ss_pred hhHHHhhhcCCCceeeccCCCC
Q 021262 136 QPIKEAALGNIPTIAFCDTDSP 157 (315)
Q Consensus 136 qaI~EAs~lnIPtIAL~DTds~ 157 (315)
+...+|+..|||||||.|--+.
T Consensus 166 ~lf~~a~~~gi~tigIGDGGNE 187 (291)
T PF14336_consen 166 DLFLAAKEPGIPTIGIGDGGNE 187 (291)
T ss_pred HHHHHhhcCCCCEEEECCCchh
Confidence 4567888899999999997543
No 151
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.30 E-value=88 Score=27.73 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.2
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||+.....+ ...++++...+||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 55 QKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred cCCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 35788877654333 35678889999999954 5543
No 152
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=33.26 E-value=66 Score=33.11 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=45.9
Q ss_pred CccccCHHHHHHHHHHHHHHHHHhh--CCCcEEEEccCchhHHHHHHHHHHhCCc----------cccCCccCCcc
Q 021262 49 GIYIINLGKTWEKLQMAARVIVAIE--NPGDIIVQSARPYGQRAVLKFAKYTHAH----------AIAGRHTPGTF 112 (315)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I~--n~~~IlfVstr~~~q~aV~kfA~~tga~----------~i~grw~pGtL 112 (315)
..|..|+..|.+.+.++..++..+. ...+|.|+++...+....+|||.+.+.. ++.+.|-|+||
T Consensus 88 ~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tl 163 (433)
T KOG1401|consen 88 LGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTL 163 (433)
T ss_pred heeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcch
Confidence 4588899999996665555555553 3467889999999999999999986432 34555666554
No 153
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.93 E-value=1.5e+02 Score=26.19 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=23.9
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
.+|.+|+..+..+...+.+....|||+|.+ |++.
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~~ 89 (264)
T cd01574 56 RVDGVIVNAPLDDADAALAAAPADVPVVFV-DGSP 89 (264)
T ss_pred CCCEEEEeCCCCChHHHHHHHhcCCCEEEE-eccC
Confidence 568888776655544566777789999997 5543
No 154
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=32.79 E-value=1.1e+02 Score=27.32 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=12.2
Q ss_pred HHhhhcCCCceeecc
Q 021262 139 KEAALGNIPTIAFCD 153 (315)
Q Consensus 139 ~EAs~lnIPtIAL~D 153 (315)
+++...+.|++++|-
T Consensus 65 ~~~~~~~~pvlGiC~ 79 (196)
T TIGR01855 65 ELVVRLGKPVLGICL 79 (196)
T ss_pred HHHHhCCCCEEEECH
Confidence 777778899999984
No 155
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=32.42 E-value=1.5e+02 Score=27.83 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=50.9
Q ss_pred HHHHHHHh-hCCCcEEEEccCch--hHHHHHHHHHHhCCccccCCccCCccCcc-c---cccccCCc-eEEEeCCCCCch
Q 021262 65 AARVIVAI-ENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-M---QTSFNEPR-LLILTDPRTDHQ 136 (315)
Q Consensus 65 Aa~~I~~I-~n~~~IlfVstr~~--~q~aV~kfA~~tga~~i~grw~pGtLTN~-~---~~~f~eP~-lLIV~DP~~d~q 136 (315)
|..+|..+ +++.++.||++|.. .+..+..+.+..|-.-...-.++|.-+.. + .......+ .|+|=|-..|.+
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~i~i~vGDs~~DI~ 198 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKNIRIHYGDSDNDIT 198 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCCCeEEEeCCHHHHH
Confidence 55666666 56667888888843 33455556665554311111223222211 1 11122333 466678777764
Q ss_pred hHHHhhhcCCCceeec-cCCCCCCcceEEecCC
Q 021262 137 PIKEAALGNIPTIAFC-DTDSPMRYVDIGIPAN 168 (315)
Q Consensus 137 aI~EAs~lnIPtIAL~-DTds~~~~VD~pIP~N 168 (315)
+ |...||.+|++. ..++.-. |+|-|
T Consensus 199 a---Ak~AGi~~I~V~~g~~s~~~----~~~~~ 224 (237)
T TIGR01672 199 A---AKEAGARGIRILRASNSTYK----PLPQA 224 (237)
T ss_pred H---HHHCCCCEEEEEecCCCCCC----Ccccc
Confidence 4 445588888884 4444321 66665
No 156
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=32.28 E-value=1.1e+02 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcc
Q 021262 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA 102 (315)
Q Consensus 63 ~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~ 102 (315)
.++.+.+ .+..++.+.++.+.+...+-|..+++..|..+
T Consensus 14 l~~k~al-~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 14 IKTKKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYEV 52 (67)
T ss_pred HHHHHHH-hcCCCCEEEEEEcChhHHHHHHHHHHHcCCEE
Confidence 3444555 55555666677888888888999999988776
No 157
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.04 E-value=2.1e+02 Score=30.12 Aligned_cols=72 Identities=11% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC--c---hhHHHHHHHHHHhCCccccCCccCCccCcccc---------------ccc
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR--P---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSF 120 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr--~---~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------------~~f 120 (315)
.|.+++.+|..-++| +++++.. . .....+.+||+++|...++.---.|.|-+-.. ..+
T Consensus 201 ~l~~a~~~L~~A~rP--vil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l 278 (595)
T PRK09107 201 AITEAVELLANAKRP--VIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAM 278 (595)
T ss_pred HHHHHHHHHHhCCCc--EEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHH
Confidence 466666666654444 5566553 2 25688999999999877654333344432211 125
Q ss_pred cCCceEEEeCCCCC
Q 021262 121 NEPRLLILTDPRTD 134 (315)
Q Consensus 121 ~eP~lLIV~DP~~d 134 (315)
.+.|+||++..+-+
T Consensus 279 ~~aDlvL~lG~~~~ 292 (595)
T PRK09107 279 HDCDVMLCVGARFD 292 (595)
T ss_pred HhCCEEEEECCCCC
Confidence 78999999997654
No 158
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=32.02 E-value=1.4e+02 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.3
Q ss_pred cCCceEEEeCCCCC-chhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d-~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|.||+.....+ ...++++...|||+|.+ |++.
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 89 (266)
T cd06282 54 QRVDGLILTVADAATSPALDLLDAERVPYVLA-YNDP 89 (266)
T ss_pred cCCCEEEEecCCCCchHHHHHHhhCCCCEEEE-eccC
Confidence 35787777543222 34678999999999988 4443
No 159
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=31.75 E-value=1.7e+02 Score=30.44 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCcccc---------------ccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------------~~f~e 122 (315)
.+..++..|.+-++| +++++.. ......+.+||+++|+..++.-.-.|.|-+-.- ..+.+
T Consensus 185 ~i~~~~~~L~~A~rP--~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~ 262 (579)
T TIGR03457 185 SLAQAARLLAEAKFP--VIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISD 262 (579)
T ss_pred HHHHHHHHHHhCCCC--EEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHh
Confidence 455666666554333 5566543 345788999999999987765333344332211 12578
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+||++..+-+
T Consensus 263 aDlil~lG~~~~ 274 (579)
T TIGR03457 263 ADVVLALGTRLG 274 (579)
T ss_pred CCEEEEECCCCc
Confidence 999999997755
No 160
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=31.52 E-value=1.1e+02 Score=29.01 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=24.9
Q ss_pred cCCceEEEe--CCCCCchhHHHhhhcCCCceeeccC
Q 021262 121 NEPRLLILT--DPRTDHQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 121 ~eP~lLIV~--DP~~d~qaI~EAs~lnIPtIAL~DT 154 (315)
+..|.+|+. |...+...++++...+||+|.+ |+
T Consensus 80 ~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~v-d~ 114 (330)
T PRK15395 80 KGVKALAINLVDPAAAPTVIEKARGQDVPVVFF-NK 114 (330)
T ss_pred cCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEE-cC
Confidence 578988887 4434456789988899999988 44
No 161
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=31.44 E-value=33 Score=31.40 Aligned_cols=127 Identities=23% Similarity=0.274 Sum_probs=67.6
Q ss_pred HHHHHHHHcCceeccc--cCCCCCcccceeeecCC--ccc-cCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHH
Q 021262 17 ADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDG--IYI-INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAV 91 (315)
Q Consensus 17 ~~i~kLLaAgvHlG~~--~~n~~M~~YIyg~R~dG--i~I-INL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV 91 (315)
.+++++|++..-+.-- .---+.+.+++.-++.| .+| +||-+=+..=..+.+||+..-.+.. ++|||.. +
T Consensus 14 ~~le~~les~~~~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdG--IISTk~~----~ 87 (181)
T COG1954 14 KDLEKALESESQYVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDG--IISTKSN----V 87 (181)
T ss_pred HHHHHHhcCCCeEEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCe--eEEccHH----H
Confidence 5788888887765510 00112333333322222 222 5666655556678888887533332 4677743 4
Q ss_pred HHHHHHhCCccccCCccCCc--cCccc-cccccCCceEEEeCCCCCchhHHH-hhhcCCCcee
Q 021262 92 LKFAKYTHAHAIAGRHTPGT--FTNQM-QTSFNEPRLLILTDPRTDHQPIKE-AALGNIPTIA 150 (315)
Q Consensus 92 ~kfA~~tga~~i~grw~pGt--LTN~~-~~~f~eP~lLIV~DP~~d~qaI~E-As~lnIPtIA 150 (315)
.+-|+..|...|-.-|+=-+ |-|-+ +..-.+||++=|+-- -=...|+| ..+.++|+||
T Consensus 88 i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLPG-v~Pkvi~~i~~~t~~piIA 149 (181)
T COG1954 88 IKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLPG-VMPKVIKEITEKTHIPIIA 149 (181)
T ss_pred HHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcCc-ccHHHHHHHHHhcCCCEEe
Confidence 45677777776654453211 11100 111268998877753 22344554 3567889886
No 162
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=31.15 E-value=2.9e+02 Score=27.68 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc--hhHHHHHHHHHHhCCccccCC----------ccC---CccCccccc-cccCCce
Q 021262 62 LQMAARVIVAIENPGDIIVQSARP--YGQRAVLKFAKYTHAHAIAGR----------HTP---GTFTNQMQT-SFNEPRL 125 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~--~~q~aV~kfA~~tga~~i~gr----------w~p---GtLTN~~~~-~f~eP~l 125 (315)
+..+++.|.+-++ -+++++..- ...+.+.+||+++|+..++.- |++ |.+.+.... .+ ++|+
T Consensus 201 i~~~~~~l~~Akr--Pvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~aDl 277 (432)
T TIGR00173 201 LDELWDRLNQAKR--GVIVAGPLPPAEDAEALAALAEALGWPLLADPLSGLRGGPHLVIDHYDLLLANPELREEL-QPDL 277 (432)
T ss_pred HHHHHHHHhhcCC--cEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCcCHHHHHhcCCchhhhC-CCCE
Confidence 4555555554333 366666532 267889999999998766532 222 122222111 24 8999
Q ss_pred EEEeCCCCCchhHHHhh-hcCCCceeeccCCCCC----CcceEEecCC
Q 021262 126 LILTDPRTDHQPIKEAA-LGNIPTIAFCDTDSPM----RYVDIGIPAN 168 (315)
Q Consensus 126 LIV~DP~~d~qaI~EAs-~lnIPtIAL~DTds~~----~~VD~pIP~N 168 (315)
||++..+-+......-. .-+..+|-+ |.|..- ..+|..|-++
T Consensus 278 vl~lG~~~~~~~~~~~~~~~~~~~i~v-d~d~~~~~~~~~~~~~i~~D 324 (432)
T TIGR00173 278 VIRFGGPPVSKRLRQWLARQPAEYWVV-DPDPGWLDPSHHATTRLEAS 324 (432)
T ss_pred EEEeCCCcchhHHHHHHhCCCCcEEEE-CCCCCccCCCCCceEEEEEC
Confidence 99999886544443321 113445544 554321 1257777775
No 163
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=31.09 E-value=1.9e+02 Score=30.02 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccCC
Q 021262 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEP 123 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~eP 123 (315)
+..++..|..-++ -+++++.. ....+.+.+|++++|+..++.----|.|-... ...+++.
T Consensus 205 i~~~~~~L~~A~r--PvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~a 282 (571)
T PRK07710 205 IRKLVQAVSVAKK--PVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYEC 282 (571)
T ss_pred HHHHHHHHHhCCC--CEEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhC
Confidence 4555555544333 35666632 34567899999999987765422223332221 1125799
Q ss_pred ceEEEeCCCCC
Q 021262 124 RLLILTDPRTD 134 (315)
Q Consensus 124 ~lLIV~DP~~d 134 (315)
|+|+++..+-+
T Consensus 283 DlvL~lG~~~~ 293 (571)
T PRK07710 283 DLLINIGARFD 293 (571)
T ss_pred CEEEEeCCCCC
Confidence 99999997754
No 164
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=30.79 E-value=1.9e+02 Score=30.11 Aligned_cols=73 Identities=12% Similarity=0.248 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCcccc--------ccccCCceEEE
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLIL 128 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~--------~~f~eP~lLIV 128 (315)
..|.+++..|..-++| +++++. + ....+.+.+||+++|...++.-.--|.|-.... ..+.+.|+||+
T Consensus 201 ~~l~~~~~~L~~AkrP--vIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~ 278 (569)
T PRK09259 201 EAVDRALDLLKKAKRP--LIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLL 278 (569)
T ss_pred HHHHHHHHHHHhCCCC--EEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEE
Confidence 3456666666554343 555544 3 246789999999999987765444466543221 13689999999
Q ss_pred eCCCCC
Q 021262 129 TDPRTD 134 (315)
Q Consensus 129 ~DP~~d 134 (315)
+..+-+
T Consensus 279 lG~~~~ 284 (569)
T PRK09259 279 VGARLN 284 (569)
T ss_pred eCCCCc
Confidence 997654
No 165
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=30.56 E-value=1.6e+02 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=20.2
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCceee
Q 021262 123 PRLLILT--DPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 123 P~lLIV~--DP~~d~qaI~EAs~lnIPtIAL 151 (315)
+.++|+. |+.-|+...+.|...+||+=..
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 4555544 4556678889999999887544
No 166
>PRK08266 hypothetical protein; Provisional
Probab=30.52 E-value=1.9e+02 Score=29.71 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc-hhHHHHHHHHHHhCCccccCCccCCccCcccc---------ccccCCceEEEeCC
Q 021262 62 LQMAARVIVAIENPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------TSFNEPRLLILTDP 131 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVstr~-~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------~~f~eP~lLIV~DP 131 (315)
+..++..|.+-+ .-+++++... ...+.+.+||+++|+..++.---.|.|-.-.. ..+.+.|+||++..
T Consensus 195 i~~~~~~L~~Ak--rPvIv~G~g~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~ 272 (542)
T PRK08266 195 IAAAAALIAAAK--NPMIFVGGGAAGAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGS 272 (542)
T ss_pred HHHHHHHHHhCC--CCEEEECCChhhHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCC
Confidence 455555544332 3366666543 46788899999999987664322355543211 12578999999998
Q ss_pred CCCch
Q 021262 132 RTDHQ 136 (315)
Q Consensus 132 ~~d~q 136 (315)
+-+..
T Consensus 273 ~~~~~ 277 (542)
T PRK08266 273 RLELP 277 (542)
T ss_pred CcCcc
Confidence 76544
No 167
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=30.47 E-value=4.2e+02 Score=24.63 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHH--------Hhh--CCCcEEEEcc---CchhH---HHHHHHHHHhCCccccCCccCCccCcccc---
Q 021262 57 KTWEKLQMAARVIV--------AIE--NPGDIIVQSA---RPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--- 117 (315)
Q Consensus 57 kT~ekL~~Aa~~I~--------~I~--n~~~IlfVst---r~~~q---~aV~kfA~~tga~~i~grw~pGtLTN~~~--- 117 (315)
+|-++++.+++-+- .+. +...|.++.. ..+.. +.+.+.++..|-..+.. -..+....+..
T Consensus 31 ~tr~~V~~~a~elgY~pn~~a~~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~-~~~~~~~~~~~~i~ 109 (341)
T PRK10703 31 ETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILC-NAWNNLEKQRAYLS 109 (341)
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEE-eCCCCHHHHHHHHH
Confidence 67777777776551 232 2334544432 23443 34455566666433221 11111111100
Q ss_pred c-cccCCceEEEeCCCCCchhHHHhhh-cCCCceeeccCCCC-CCcceEEe
Q 021262 118 T-SFNEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFCDTDSP-MRYVDIGI 165 (315)
Q Consensus 118 ~-~f~eP~lLIV~DP~~d~qaI~EAs~-lnIPtIAL~DTds~-~~~VD~pI 165 (315)
. .-+.+|.||++....+...++.... .|||+|.+ |+..+ ..+.++..
T Consensus 110 ~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~-d~~~~~~~~~~~v~ 159 (341)
T PRK10703 110 MLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM-DWGEAKADFTDAII 159 (341)
T ss_pred HHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEE-ecccCCcCCCCeEE
Confidence 0 0146898888765444456677666 79999955 66542 33355543
No 168
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.01 E-value=1.8e+02 Score=31.21 Aligned_cols=100 Identities=10% Similarity=-0.023 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-c
Q 021262 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-H 135 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-~ 135 (315)
|-..++..|+.-+..-...-+++++|..+... -+++.++..|..- +=+|+|. . +.....+..-|++|+..-.+. .
T Consensus 411 Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~e-eLk~la~elgL~d-~V~FlG~-~-~Dv~~~LaaADVfVlPS~~EGfp 486 (578)
T PRK15490 411 KNPFAWIDFAARYLQHHPATRFVLVGDGDLRA-EAQKRAEQLGILE-RILFVGA-S-RDVGYWLQKMNVFILFSRYEGLP 486 (578)
T ss_pred cCHHHHHHHHHHHHhHCCCeEEEEEeCchhHH-HHHHHHHHcCCCC-cEEECCC-h-hhHHHHHHhCCEEEEcccccCcc
Confidence 33344545443332222334677788765433 4566676666321 1124442 2 223334567788877653322 5
Q ss_pred hhHHHhhhcCCCceeeccCCCCCCcc
Q 021262 136 QPIKEAALGNIPTIAFCDTDSPMRYV 161 (315)
Q Consensus 136 qaI~EAs~lnIPtIAL~DTds~~~~V 161 (315)
..+-||...|+|+|+- |.....+.|
T Consensus 487 ~vlLEAMA~GlPVVAT-dvGG~~EiV 511 (578)
T PRK15490 487 NVLIEAQMVGVPVIST-PAGGSAECF 511 (578)
T ss_pred HHHHHHHHhCCCEEEe-CCCCcHHHc
Confidence 6889999999999965 444444443
No 169
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=29.81 E-value=1.4e+02 Score=26.25 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=15.0
Q ss_pred chhHHHhhhcCCCceeecc
Q 021262 135 HQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~D 153 (315)
...++++...++|++|+|-
T Consensus 60 ~~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 60 PRADEKIFELGVPVLGICY 78 (188)
T ss_pred hHHHHHHHhCCCCEEEECH
Confidence 3567788888999999983
No 170
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.64 E-value=31 Score=26.10 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.1
Q ss_pred hhHHHhhhcCCCceeeccC
Q 021262 136 QPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 136 qaI~EAs~lnIPtIAL~DT 154 (315)
.=|.|+...|.||+|||--
T Consensus 15 ~kI~esav~G~pVvALCGk 33 (58)
T PF11238_consen 15 DKIAESAVMGTPVVALCGK 33 (58)
T ss_pred hHHHHHHhcCceeEeeeCc
Confidence 4578999999999999853
No 171
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.44 E-value=3.1e+02 Score=27.67 Aligned_cols=120 Identities=10% Similarity=0.098 Sum_probs=61.0
Q ss_pred CccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhH-HH-HHHHHHHhCCccccCCccCCccCccccccccCCceE
Q 021262 49 GIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ-RA-VLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLL 126 (315)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q-~a-V~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lL 126 (315)
.++|+-+.++=. -+++++. +++.+|.+...++... .. ..+ .+..|..++.+.+. ...+..+|+|
T Consensus 16 ~i~v~G~G~sG~---a~a~~L~--~~G~~V~~~D~~~~~~~~~~~~~-l~~~gi~~~~~~~~--------~~~~~~~dlV 81 (458)
T PRK01710 16 KVAVVGIGVSNI---PLIKFLV--KLGAKVTAFDKKSEEELGEVSNE-LKELGVKLVLGENY--------LDKLDGFDVI 81 (458)
T ss_pred eEEEEcccHHHH---HHHHHHH--HCCCEEEEECCCCCccchHHHHH-HHhCCCEEEeCCCC--------hHHhccCCEE
Confidence 478888877643 2233333 2344555544333211 11 122 23345544332221 1113567888
Q ss_pred EEeC-CCCCchhHHHhhhcCCCceeeccCCCCC-CcceEEecCCCCCcchHH-HHHHHHH
Q 021262 127 ILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIG-CLFWLLA 183 (315)
Q Consensus 127 IV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~Nnds~~SI~-li~~lLa 183 (315)
|+.- -..++..+.+|...|||+++-.+--... ..--+.|-|-| ++.+.. |+..+|.
T Consensus 82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTn-GKTTT~~ll~~iL~ 140 (458)
T PRK01710 82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSD-GKTTTTTLIYEMLK 140 (458)
T ss_pred EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCC-CHHHHHHHHHHHHH
Confidence 7773 1456788999999999999733221111 11247888864 555544 4444443
No 172
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=29.44 E-value=4.9e+02 Score=28.18 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=67.3
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHhC---CccccCCccCCc--cCccccccccCCceEEEeCCCC-----CchhHH
Q 021262 73 ENPGDIIVQSARPY---GQRAVLKFAKYTH---AHAIAGRHTPGT--FTNQMQTSFNEPRLLILTDPRT-----DHQPIK 139 (315)
Q Consensus 73 ~n~~~IlfVstr~~---~q~aV~kfA~~tg---a~~i~grw~pGt--LTN~~~~~f~eP~lLIV~DP~~-----d~qaI~ 139 (315)
.+-.+++|+++... ..+.-+|+-+-+. ..|-.+-|..|- +++.. .| +|++.+.. ....++
T Consensus 524 ~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~-----~p--Vi~l~~~~~~~e~~~~~~~ 596 (670)
T PTZ00394 524 KESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDET-----SP--VLAMCTHDKHFGLSKSAVQ 596 (670)
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCC-----ce--EEEEEcCCchHHHHHHHHH
Confidence 45678899988753 3344445544432 334456677773 33321 12 33443322 234789
Q ss_pred HhhhcCCCceeeccCCC-C---CCcceEEecCCCCCcchHHH--HHHHHHHHHHHhhcCC
Q 021262 140 EAALGNIPTIAFCDTDS-P---MRYVDIGIPANNKGKHSIGC--LFWLLARMVLQMRGTI 193 (315)
Q Consensus 140 EAs~lnIPtIAL~DTds-~---~~~VD~pIP~Nnds~~SI~l--i~~lLaraVl~~rg~i 193 (315)
|....+=.+|.|++.+. . .....+.||..++-...+-+ .+++|+..+-..||..
T Consensus 597 evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~~l~pll~~iplQllAy~~A~~rG~d 656 (670)
T PTZ00394 597 QVKARGGAVVVFATEVDAELKAAASEIVLVPKTVDCLQCVVNVIPFQLLAYYMALLRGNN 656 (670)
T ss_pred HHHHcCCeEEEEECCCcchhcccCCcEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999976432 1 12246788876554444333 2588998888888864
No 173
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=29.31 E-value=1.5e+02 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=24.5
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCC
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
.+|-||+.....+...+.++...|||+|.+ |++
T Consensus 55 ~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~-~~~ 87 (269)
T cd06297 55 LTDGLLLASYDLTERLAERRLPTERPVVLV-DAE 87 (269)
T ss_pred CCCEEEEecCccChHHHHHHhhcCCCEEEE-ccC
Confidence 467777776555666778888899999988 554
No 174
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=29.21 E-value=88 Score=28.99 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=24.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~ 158 (315)
..||+|| +| .+..+..=|...|||+|.|.|-....
T Consensus 93 ~~pDlVI-sD--~~~~~~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 93 FRPDLVI-SD--FYPLAALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred cCCCEEE-Ec--ChHHHHHHHHhcCCCEEEEEehHHcc
Confidence 4799765 55 23345677888999999998775543
No 175
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.73 E-value=2.1e+02 Score=29.74 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHhCCccccCCccCCccCcc---------------ccccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------------MQTSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~---~~q~aV~kfA~~tga~~i~grw~pGtLTN~---------------~~~~f~e 122 (315)
.+..++..|..-++| +++++..- ...+.+.+||+++|+..++.---.|.|-.. ....+.+
T Consensus 200 ~i~~~~~~L~~AkrP--vIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~ 277 (564)
T PRK08155 200 SIRDAAAMINAAKRP--VLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQE 277 (564)
T ss_pred HHHHHHHHHHhCCCC--EEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHh
Confidence 355556555543333 56665432 457889999999999877521111222111 1113578
Q ss_pred CceEEEeCCCCCc
Q 021262 123 PRLLILTDPRTDH 135 (315)
Q Consensus 123 P~lLIV~DP~~d~ 135 (315)
.|+||++..+-+.
T Consensus 278 aDlvl~lG~~~~~ 290 (564)
T PRK08155 278 ADLLIVLGARFDD 290 (564)
T ss_pred CCEEEEECCCCCc
Confidence 9999999987653
No 176
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=28.69 E-value=2.2e+02 Score=29.28 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCcccc---------------ccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------------~~f~e 122 (315)
.|.+++..|..-++ -+++++.. ....+.+.+||+++|...++.-.--|.|-.... ..+.+
T Consensus 185 ~l~~~~~~L~~Akr--PvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~ 262 (548)
T PRK08978 185 ELEQARALLAQAKK--PVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQE 262 (548)
T ss_pred HHHHHHHHHHcCCC--CEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHh
Confidence 45566665554433 36666653 245678999999999877664223344432110 12478
Q ss_pred CceEEEeCCCCCc
Q 021262 123 PRLLILTDPRTDH 135 (315)
Q Consensus 123 P~lLIV~DP~~d~ 135 (315)
.|+|+++..+.+.
T Consensus 263 aD~vl~lG~~~~~ 275 (548)
T PRK08978 263 CDLLIAVGARFDD 275 (548)
T ss_pred CCEEEEEcCCCCc
Confidence 9999999987543
No 177
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=28.67 E-value=1.8e+02 Score=25.78 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=40.4
Q ss_pred EEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-C---CCC---chhHHHhhhcCCCcee
Q 021262 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-P---RTD---HQPIKEAALGNIPTIA 150 (315)
Q Consensus 78 IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P---~~d---~qaI~EAs~lnIPtIA 150 (315)
||+|.+......-+..+.+..|.....-++--+.+-. ..-..|+.||+.. | ..+ ...++ ....++|++|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~~~~~~iilsgGp~~~~~~~~~~~~i~-~~~~~~PiLG 77 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDG---IEALNPTHLVISPGPCTPNEAGISLQAIE-HFAGKLPILG 77 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHH---HhhCCCCEEEEeCCCCChHHCcchHHHHH-HhcCCCCEEE
Confidence 7888777655555556667777765443433232211 1113488888885 2 111 23333 3467899999
Q ss_pred ec
Q 021262 151 FC 152 (315)
Q Consensus 151 L~ 152 (315)
+|
T Consensus 78 IC 79 (193)
T PRK08857 78 VC 79 (193)
T ss_pred Ec
Confidence 97
No 178
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=28.56 E-value=2.3e+02 Score=29.28 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCcccc---------------ccccCC
Q 021262 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNEP 123 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------------~~f~eP 123 (315)
+.+++..|.+-++| +++++. + ....+.+.+|++++|+..++.---.|.|-.... ..+.+.
T Consensus 191 i~~~~~~L~~AkrP--vi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~a 268 (558)
T TIGR00118 191 IKKAAELINLAKKP--VILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHEC 268 (558)
T ss_pred HHHHHHHHHhCCCc--EEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhC
Confidence 55666666554333 555553 3 246788999999999987764333355543211 124789
Q ss_pred ceEEEeCCCCC
Q 021262 124 RLLILTDPRTD 134 (315)
Q Consensus 124 ~lLIV~DP~~d 134 (315)
|+||+++.+-+
T Consensus 269 D~vl~lG~~~~ 279 (558)
T TIGR00118 269 DLIIAVGARFD 279 (558)
T ss_pred CEEEEECCCCC
Confidence 99999997754
No 179
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.54 E-value=2.2e+02 Score=29.48 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccCC
Q 021262 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEP 123 (315)
Q Consensus 62 L~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~eP 123 (315)
+..+++.|..-++ -+++++. + ......+.+||+.+|+..++.---.|.|-+-. ...++++
T Consensus 194 i~~~~~~L~~A~r--Pvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~a 271 (557)
T PRK08199 194 LARLAELLARAER--PLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREA 271 (557)
T ss_pred HHHHHHHHHhCCC--CEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhC
Confidence 4555566554433 3566665 2 34568899999999998776311123332211 1125799
Q ss_pred ceEEEeCCCCC
Q 021262 124 RLLILTDPRTD 134 (315)
Q Consensus 124 ~lLIV~DP~~d 134 (315)
|+||++..+-+
T Consensus 272 Dlvl~lG~~~~ 282 (557)
T PRK08199 272 DLVLAVGTRLG 282 (557)
T ss_pred CEEEEeCCCCc
Confidence 99999997654
No 180
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=28.49 E-value=1e+02 Score=27.25 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=22.6
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeec
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (315)
.+|.||+.....+...++++...+||+|.+-
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~ipvV~~~ 85 (268)
T cd06298 55 QVDGIIFMGGKISEEHREEFKRSPTPVVLAG 85 (268)
T ss_pred cCCEEEEeCCCCcHHHHHHHhcCCCCEEEEc
Confidence 4677777655445567788878899998883
No 181
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=28.42 E-value=1.9e+02 Score=26.14 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=27.7
Q ss_pred CccCCccCcc-ccccccCCceEEEeCCCC---CchhHHHhhhcCCCceee
Q 021262 106 RHTPGTFTNQ-MQTSFNEPRLLILTDPRT---DHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 106 rw~pGtLTN~-~~~~f~eP~lLIV~DP~~---d~qaI~EAs~lnIPtIAL 151 (315)
.|.+|.+... ...-++.-|++|..-... -...+.||..+|+|+|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~ 299 (366)
T cd03822 250 IFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIST 299 (366)
T ss_pred EEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEec
Confidence 3555534332 223345667776543322 245789999999999984
No 182
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.33 E-value=96 Score=27.49 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceeeccCC
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
..|.||+..+..+...++++...+||+|.+ |+.
T Consensus 55 ~~dgiii~~~~~~~~~~~~~~~~~ipvV~i-~~~ 87 (270)
T cd06296 55 RTDGVILVTPELTSAQRAALRRTGIPFVVV-DPA 87 (270)
T ss_pred CCCEEEEecCCCChHHHHHHhcCCCCEEEE-ecc
Confidence 468787776655556789999999999987 544
No 183
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=27.99 E-value=1.6e+02 Score=30.24 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=43.8
Q ss_pred CccCCccCccccccccCCce--EEEeCCCCCchhHHHh-hhcCCCceeeccCCCCCC-cceEEecCCCCCcchHHHHH
Q 021262 106 RHTPGTFTNQMQTSFNEPRL--LILTDPRTDHQPIKEA-ALGNIPTIAFCDTDSPMR-YVDIGIPANNKGKHSIGCLF 179 (315)
Q Consensus 106 rw~pGtLTN~~~~~f~eP~l--LIV~DP~~d~qaI~EA-s~lnIPtIAL~DTds~~~-~VD~pIP~Nnds~~SI~li~ 179 (315)
|+-||-||--.-..-++.|. ||-.||... .+-.=+ ....||+|+|==.-|+.. .-|+.||.=-++..+=+.++
T Consensus 318 rynPgE~s~vdlL~~k~vDAalvi~sDp~ah-~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP~aI~gmE~~GTay 394 (429)
T COG1029 318 RYNPGEFSAVDLLKRKEVDAALVIASDPGAH-FPRDAVEHLAEIPVICIDPHPTPTTEVADVVIPSAIDGMEAEGTAY 394 (429)
T ss_pred CCCcccccHHHHHhccCCCeEEEEecCcccc-ChHHHHHHhhcCCEEEecCCCCcchhhcceecccceeeeeccceEE
Confidence 55555555433333467774 555688664 333322 445899999854444443 47899999777666655443
No 184
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.99 E-value=1.1e+02 Score=26.86 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCceEEEeCCCCC-chhHHHhhhcCCCceeeccCCCCCCcceEEec
Q 021262 122 EPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (315)
Q Consensus 122 eP~lLIV~DP~~d-~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (315)
.+|.||+.....+ ...++++...|||+|.+ |++.+...+++.-+
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~ 99 (268)
T cd06289 55 GVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGAPFDYVGP 99 (268)
T ss_pred CCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCCCCCEEee
Confidence 4677777754333 34788999999999987 44433233455443
No 185
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.94 E-value=1.3e+02 Score=26.37 Aligned_cols=21 Identities=5% Similarity=0.011 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhCCCcEEEEccC
Q 021262 63 QMAARVIVAIENPGDIIVQSAR 84 (315)
Q Consensus 63 ~~Aa~~I~~I~n~~~IlfVstr 84 (315)
..+++.+.. ...++|.|++..
T Consensus 103 ~~~~~~l~~-~g~~~i~~v~~~ 123 (259)
T cd01542 103 YELGEYLAQ-QGHKNIAYLGVS 123 (259)
T ss_pred HHHHHHHHH-cCCCcEEEEcCC
Confidence 344555544 345788888643
No 186
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.83 E-value=2.2e+02 Score=29.82 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccC--------------cccc-ccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQMQ-TSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLT--------------N~~~-~~f~e 122 (315)
.+.+++..|..-++| +++++.. ....+.+.+||+++|+..++.-.-.|.|- +... ..+.+
T Consensus 192 ~i~~~~~~L~~AkrP--vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~ 269 (586)
T PRK06276 192 QIKKAAELIAEAERP--VILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTE 269 (586)
T ss_pred HHHHHHHHHHcCCCe--EEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHHc
Confidence 456666666554333 5555542 35678899999999987765322223322 1111 23689
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+|++++.+-+
T Consensus 270 aD~vl~lG~~~~ 281 (586)
T PRK06276 270 SDVLIAIGCRFS 281 (586)
T ss_pred CCEEEEECCCCC
Confidence 999999997744
No 187
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=27.77 E-value=1.1e+02 Score=27.16 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=35.8
Q ss_pred EEEEccCc-hhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC----CCCC---chhHHHhhhcCCCce
Q 021262 78 IIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTD---HQPIKEAALGNIPTI 149 (315)
Q Consensus 78 IlfVstr~-~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D----P~~d---~qaI~EAs~lnIPtI 149 (315)
||+|.+.. +...++..+.+ .|+....-|+-..++. ...-..||.||+.. |..+ ...++ ....++|+.
T Consensus 2 il~idn~Dsft~nl~~~l~~-~g~~v~v~~~~~~~~~---~~~~~~~d~iils~GPg~p~~~~~~~~~~~-~~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCE-LGADVLVKRNDALTLA---DIDALKPQKIVISPGPCTPDEAGISLDVIR-HYAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHH-CCCcEEEEeCCCCCHH---HHHhcCCCEEEEcCCCCChHHCCccHHHHH-HhcCCCCEE
Confidence 67776654 34444444444 4665544344322211 11113578888875 2222 22333 345688999
Q ss_pred eec
Q 021262 150 AFC 152 (315)
Q Consensus 150 AL~ 152 (315)
|+|
T Consensus 77 GIC 79 (187)
T PRK08007 77 GVC 79 (187)
T ss_pred EEC
Confidence 987
No 188
>PF01646 Herpes_UL24: Herpes virus protein UL24; InterPro: IPR002580 This entry consists of the human herpes virus protein UL24 and its orthologues, which are universally present in avian, mammalian and reptilian herpes viruses. Though the functions of these proteins are not known, computational analysis suggests that they may belong to the restriction endonuclease-like fold superfamily, which contains a variety of endonucleases, DNA repair enzymes and exonucleases []. Proteins in this entry contain an absolutely conserved PD-(D/E)XK motif thought to be critical for nucleotide-cleaving activity.
Probab=27.75 E-value=96 Score=28.24 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=52.5
Q ss_pred HHHHHhCCccccCCccCCccCcccc-cc----c------cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcc
Q 021262 93 KFAKYTHAHAIAGRHTPGTFTNQMQ-TS----F------NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYV 161 (315)
Q Consensus 93 kfA~~tga~~i~grw~pGtLTN~~~-~~----f------~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (315)
++++....+.-..++++|.+..... .+ | |.||+||+++...+. ...-|-.+-..|--. .+
T Consensus 22 ~L~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~FEV~LG~R~PDCI~v~~~~~~~-~~~vCyiiElKTc~~---~~----- 92 (179)
T PF01646_consen 22 KLARYFRSFTALNKFLGISFPCPKRATRFRLFFEVNLGRRRPDCICVFSSESSG-GKGVCYIIELKTCRF---SA----- 92 (179)
T ss_pred HHHHhhhhHHHHhhhcCCCCCCccccccEEEEEEEecCCCCCCEEEEEecCCCC-cceEEEEEEeehhcc---cc-----
Confidence 3344443333344677777765544 22 2 899999999876432 111111111111111 01
Q ss_pred eEEecCCCCCcchHHHH--HHHHHHHHHHhhcCCCC-CCCcccccccccccC
Q 021262 162 DIGIPANNKGKHSIGCL--FWLLARMVLQMRGTIRP-GHKWDVMVDLFFYRE 210 (315)
Q Consensus 162 D~pIP~Nnds~~SI~li--~~lLaraVl~~rg~i~~-~~~w~v~~dl~fyrd 210 (315)
.. .|+.+.+. ... +.-|...+...+..... ...|.|.|-|.|++-
T Consensus 93 --~~-~~t~tk~~-Qr~qGl~QLrDs~~~l~~~~p~G~~~~~v~P~LvF~~Q 140 (179)
T PF01646_consen 93 --SN-MNTATKRL-QRAQGLRQLRDSVRLLRNLAPPGGEPWSVCPVLVFVSQ 140 (179)
T ss_pred --cC-CCCHHHHH-HHHHhHHHHHHHHHHHHHhCCCCCCeEEEEEEEEEEEc
Confidence 01 12233322 221 34456666666654443 459999999999873
No 189
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=27.63 E-value=5.2e+02 Score=24.24 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=68.2
Q ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcccc--------
Q 021262 46 RNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ-------- 117 (315)
Q Consensus 46 R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~-------- 117 (315)
|-|+-.-|=+.....+|.+|-.+. +++.+|.|++...... .+ +..+..|-..+. +++. +++.+
T Consensus 5 r~Da~~~iG~GHv~Rcl~LA~~l~---~~g~~v~f~~~~~~~~-~~-~~i~~~g~~v~~---~~~~-~~~~~d~~~~~~~ 75 (279)
T TIGR03590 5 RADASSEIGLGHVMRCLTLARALH---AQGAEVAFACKPLPGD-LI-DLLLSAGFPVYE---LPDE-SSRYDDALELINL 75 (279)
T ss_pred EecCCccccccHHHHHHHHHHHHH---HCCCEEEEEeCCCCHH-HH-HHHHHcCCeEEE---ecCC-CchhhhHHHHHHH
Confidence 446666777777777777665442 4677899998775432 12 222333433211 2221 11211
Q ss_pred ccccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCC
Q 021262 118 TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (315)
Q Consensus 118 ~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nn 169 (315)
..-..|++||+...+.+..-.+-.+..+.+++.|=|.+.-....|+.|=.|-
T Consensus 76 l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~ 127 (279)
T TIGR03590 76 LEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNL 127 (279)
T ss_pred HHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCC
Confidence 0113699998888877765544444557788888887766668888886653
No 190
>PRK08322 acetolactate synthase; Reviewed
Probab=27.56 E-value=2.3e+02 Score=29.06 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst---r~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~e 122 (315)
.+.+++..|..-++ -+++++. +....+.+.+||+++|...++.---.|.|-... ...+.+
T Consensus 185 ~i~~~~~~l~~A~r--Pviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~ 262 (547)
T PRK08322 185 AIERAAEAIQAAKN--PLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEH 262 (547)
T ss_pred HHHHHHHHHHhCCC--cEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHHh
Confidence 45555555554333 3566655 234678899999999987765322223333211 122578
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+||++..+-+
T Consensus 263 aDlil~lG~~l~ 274 (547)
T PRK08322 263 ADLIINVGHDVI 274 (547)
T ss_pred CCEEEEECCCCc
Confidence 999999996654
No 191
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=27.47 E-value=1.7e+02 Score=26.05 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCceEEEeCCCC--CchhHHHhhhcCCCceeeccCCCCC--CcceEE
Q 021262 122 EPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDSPM--RYVDIG 164 (315)
Q Consensus 122 eP~lLIV~DP~~--d~qaI~EAs~lnIPtIAL~DTds~~--~~VD~p 164 (315)
..|.+|+.-... ....+.++...|||+|.+ |++.+. ..+.+.
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~~~V 101 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRRPENAPKGVAYV 101 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCCCCCCCCeeEEE
Confidence 467777654332 346778889999999966 554332 344443
No 192
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=27.46 E-value=2.1e+02 Score=26.92 Aligned_cols=45 Identities=9% Similarity=-0.004 Sum_probs=27.9
Q ss_pred ccCCccCccc-cccccCCceEEEeCCCC-CchhHHHhhhcCCCceee
Q 021262 107 HTPGTFTNQM-QTSFNEPRLLILTDPRT-DHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 107 w~pGtLTN~~-~~~f~eP~lLIV~DP~~-d~qaI~EAs~lnIPtIAL 151 (315)
|++|.++... ...+..-|++|+..-.+ -...+.||...|+|+|+-
T Consensus 264 ~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s 310 (388)
T TIGR02149 264 WINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVAS 310 (388)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEe
Confidence 4555554332 22245667777654222 245779999999999984
No 193
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.34 E-value=3.6e+02 Score=28.53 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=55.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEcc-Cc--hhHHHHHHHHHHhCCccccC----CccC-----------Cc
Q 021262 50 IYIINLGKTWEKLQMAARVIVAIENPGDIIVQSA-RP--YGQRAVLKFAKYTHAHAIAG----RHTP-----------GT 111 (315)
Q Consensus 50 i~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVst-r~--~~q~aV~kfA~~tga~~i~g----rw~p-----------Gt 111 (315)
..=|..+.- |.+.+.-|..+ .+..++|..+ +. ....+..+|+...|...+.. |+.+ |.
T Consensus 78 ~~~ISWDEA---l~~IA~kL~~~-~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~ 153 (574)
T cd02767 78 YRPISWDEA---FAEIAARLRAL-DPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGK 153 (574)
T ss_pred EEEecHHHH---HHHHHHHHhhh-CCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCC
Confidence 333555543 33334444444 3466777643 32 23446778999888754432 1111 12
Q ss_pred cCccccccccCCceEEEe--CCCCCch----hHHHhhhcCCCceeeccC
Q 021262 112 FTNQMQTSFNEPRLLILT--DPRTDHQ----PIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 112 LTN~~~~~f~eP~lLIV~--DP~~d~q----aI~EAs~lnIPtIAL~DT 154 (315)
.|+.. .-|..-|+||+. ||..+|. .|+||++-|..+|.| |.
T Consensus 154 ~t~~~-~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvI-dP 200 (574)
T cd02767 154 GTVSL-EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVI-NP 200 (574)
T ss_pred CCCCH-HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEE-CC
Confidence 22211 124667888888 5666653 468999999888866 55
No 194
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=27.29 E-value=1.7e+02 Score=26.67 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=39.4
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCc-cccCCccCCccCccccccccCCceEEEeCCCCCc-hh
Q 021262 61 KLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDH-QP 137 (315)
Q Consensus 61 kL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~-~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d~-qa 137 (315)
.+..|+|+++. +--.|.|-+-+.+.- ++|..+|...... +-+.+|.. ..+|+.. +..-|=|+++.|..+. .+
T Consensus 23 ~iedaARlLAQA~vgeG~IYi~G~~Em--~~v~~~Al~g~E~l~~~k~l~~-~~~~~~~--lt~~DRVllfs~~~~~~e~ 97 (172)
T PF10740_consen 23 SIEDAARLLAQAIVGEGTIYIYGFGEM--EAVEAEALYGAEPLPSAKRLSE-DLENFDE--LTETDRVLLFSPFSTDEEA 97 (172)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEE-GGG--GGGHHHHHCSTT--TTEEE--T-T----------TT-EEEEEES-S--HHH
T ss_pred hHHHHHHHHHHHHhcCCEEEEEecChH--HHHHHHHHcCCCCCchhhcCcc-ccccccc--ccccceEEEEeCCCCCHHH
Confidence 57889999874 556677877776632 3454455433222 33445652 2222211 2334555555555554 55
Q ss_pred HH---HhhhcCCCceeec
Q 021262 138 IK---EAALGNIPTIAFC 152 (315)
Q Consensus 138 I~---EAs~lnIPtIAL~ 152 (315)
++ .....+||++++|
T Consensus 98 ~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 98 VALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 44 4455599999999
No 195
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.97 E-value=1.2e+02 Score=27.87 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (315)
+.+|-||+.....+ ...++++...|||+|.+ |++.
T Consensus 55 ~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v-~~~~ 91 (298)
T cd06302 55 QGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH-DSDV 91 (298)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE-cCCC
Confidence 45898888765444 46788899999998876 5443
No 196
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=26.88 E-value=99 Score=26.69 Aligned_cols=119 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccCch------hHHHHHHHHHHhC----CccccCCccCCccCccccccccC---CceEEEe
Q 021262 63 QMAARVIVAIENPGDIIVQSARPY------GQRAVLKFAKYTH----AHAIAGRHTPGTFTNQMQTSFNE---PRLLILT 129 (315)
Q Consensus 63 ~~Aa~~I~~I~n~~~IlfVstr~~------~q~aV~kfA~~tg----a~~i~grw~pGtLTN~~~~~f~e---P~lLIV~ 129 (315)
..++.++.... .++|.+++.... ..+.+.+..+..| ...+.+.|....+.......+.. |+.|++.
T Consensus 107 ~~~~~~l~~~g-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 185 (264)
T cd01537 107 YLAGEHLAEKG-HRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAA 185 (264)
T ss_pred HHHHHHHHHhc-CCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEc
Q ss_pred CCCCCchhHHHhhhcCC------CceeeccCC----CCCCcceEEecCCCCCcchHHHHHHHH
Q 021262 130 DPRTDHQPIKEAALGNI------PTIAFCDTD----SPMRYVDIGIPANNKGKHSIGCLFWLL 182 (315)
Q Consensus 130 DP~~d~qaI~EAs~lnI------PtIAL~DTd----s~~~~VD~pIP~Nnds~~SI~li~~lL 182 (315)
+......+++.+...|+ +++++-++. +.+....+..+...-+.+.+.++.+++
T Consensus 186 ~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~~~~~~~~~~~ti~~~~~~~g~~~~~~~~~~~ 248 (264)
T cd01537 186 NDDMALGALRALREAGLRVPDDISVIGFDGTPEALLAGPPLTTVRQPPDELGRAAVELLLELL 248 (264)
T ss_pred CcHHHHHHHHHHHHhCCCCCCCeEEEeecCccHHHhhCCcceeEeCCHHHHHHHHHHHHHHHh
No 197
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=26.78 E-value=1.3e+02 Score=27.81 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred cCCceEEEeCCCC-CchhHHHhhhcCCCceeeccCCCCCCcceEEecCC
Q 021262 121 NEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (315)
Q Consensus 121 ~eP~lLIV~DP~~-d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~N 168 (315)
+..|-||++.... +...+++....+||+|. +|.+.+-..+++...-|
T Consensus 115 ~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~-~~~~~~~~~~~~V~~dn 162 (327)
T TIGR02417 115 RQVDALIVASCMPPEDAYYQKLQNEGLPVVA-LDRSLDDEHFCSVISDD 162 (327)
T ss_pred cCCCEEEEeCCCCCChHHHHHHHhcCCCEEE-EccccCCCCCCEEEeCc
Confidence 4678888775433 44667888888999985 46654333355555433
No 198
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.67 E-value=2.5e+02 Score=29.41 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCc--------------ccc-cccc
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTN--------------QMQ-TSFN 121 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN--------------~~~-~~f~ 121 (315)
+.+..++..|.+-++| +++++.. ......+.+||+++|+..++.---.|.|-. ... ..+.
T Consensus 209 ~~i~~~~~~L~~AkrP--vil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~ 286 (587)
T PRK06965 209 GQIRKAVSLLLSAKRP--YIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQ 286 (587)
T ss_pred HHHHHHHHHHHhcCCC--EEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHH
Confidence 3466666666654443 5666542 356788999999999876643222233221 111 1257
Q ss_pred CCceEEEeCCCCCc
Q 021262 122 EPRLLILTDPRTDH 135 (315)
Q Consensus 122 eP~lLIV~DP~~d~ 135 (315)
+.|+||++..+-+.
T Consensus 287 ~aDlvl~lG~~~~~ 300 (587)
T PRK06965 287 HCDVLIAIGARFDD 300 (587)
T ss_pred hCCEEEEECCCCcc
Confidence 89999999977543
No 199
>PLN02275 transferase, transferring glycosyl groups
Probab=26.57 E-value=1.1e+02 Score=29.58 Aligned_cols=72 Identities=7% Similarity=-0.044 Sum_probs=43.1
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCcc-CccccccccCCceEEEeCCCC--C--chhHHHhhhcCCCceee
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF-TNQMQTSFNEPRLLILTDPRT--D--HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtL-TN~~~~~f~eP~lLIV~DP~~--d--~qaI~EAs~lnIPtIAL 151 (315)
+++++|..+.- .-+++.++..|..- -.|.+|.+ .+.....+..-|+.|+..+.. + -..+-||.-+|+|+|+.
T Consensus 263 ~l~ivG~G~~~-~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~ 339 (371)
T PLN02275 263 LFIITGKGPQK-AMYEEKISRLNLRH--VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAV 339 (371)
T ss_pred EEEEEeCCCCH-HHHHHHHHHcCCCc--eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEe
Confidence 46667776653 34666777766432 23455533 222233356778877643221 1 24688999999999995
No 200
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=26.42 E-value=2.6e+02 Score=29.43 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCccc---------------ccccc
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFN 121 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~ 121 (315)
+.+.+++.+|..-++| +++++.. ....+.+.+||+++|+..++.---.|.|-.-. ...++
T Consensus 212 ~~v~~~~~~L~~AkrP--vI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~ 289 (616)
T PRK07418 212 RQINAALKLIEEAERP--LLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVT 289 (616)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHH
Confidence 3466666676655444 6666553 25678899999999987664321223322110 11257
Q ss_pred CCceEEEeCCCCC
Q 021262 122 EPRLLILTDPRTD 134 (315)
Q Consensus 122 eP~lLIV~DP~~d 134 (315)
+.|+|+++..+-+
T Consensus 290 ~aDlvL~vG~~~~ 302 (616)
T PRK07418 290 ECDLLIAVGARFD 302 (616)
T ss_pred hCCEEEEEcCCCC
Confidence 9999999997754
No 201
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=26.40 E-value=2.3e+02 Score=25.79 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC--c
Q 021262 58 TWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--H 135 (315)
Q Consensus 58 T~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d--~ 135 (315)
=++.|..|++.+..-..+-++++++..+... -+.+.++..+... +=+++ |... .....++.-|++|+.. +.+ .
T Consensus 202 g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~-~~~~~~~~~~~~~-~v~~~-g~~~-~~~~~~~~ad~~v~~s-~~e~~~ 276 (360)
T cd04951 202 DYPNLLKAFAKLLSDYLDIKLLIAGDGPLRA-TLERLIKALGLSN-RVKLL-GLRD-DIAAYYNAADLFVLSS-AWEGFG 276 (360)
T ss_pred CcHHHHHHHHHHHhhCCCeEEEEEcCCCcHH-HHHHHHHhcCCCC-cEEEe-cccc-cHHHHHHhhceEEecc-cccCCC
Confidence 3344444444333221245667777665443 3555555544221 11233 3322 2233355667765543 223 4
Q ss_pred hhHHHhhhcCCCcee
Q 021262 136 QPIKEAALGNIPTIA 150 (315)
Q Consensus 136 qaI~EAs~lnIPtIA 150 (315)
..+-||..+|+|+|+
T Consensus 277 ~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 277 LVVAEAMACELPVVA 291 (360)
T ss_pred hHHHHHHHcCCCEEE
Confidence 567899999999997
No 202
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.38 E-value=1e+02 Score=28.14 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=23.5
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTd 155 (315)
+.+|.||+.-...+ ...++++...|||+|.+ |.+
T Consensus 54 ~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~-~~~ 89 (288)
T cd01538 54 KGVDVLVIAPVDGEALASAVEKAADAGIPVIAY-DRL 89 (288)
T ss_pred cCCCEEEEecCChhhHHHHHHHHHHCCCCEEEE-CCC
Confidence 35787777643322 45778989999999987 443
No 203
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=26.32 E-value=1.8e+02 Score=29.37 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=38.8
Q ss_pred CcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC----ch---hHHHhhhcCCCc
Q 021262 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQ---PIKEAALGNIPT 148 (315)
Q Consensus 76 ~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d----~q---aI~EAs~lnIPt 148 (315)
.+|++|... .+.-+.++-...|+..+.-++. .+ .....-..||.||+.+-..| .. .+++....++|+
T Consensus 193 ~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~---~~-~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~Pi 266 (382)
T CHL00197 193 LKIIVIDFG--VKYNILRRLKSFGCSITVVPAT---SP-YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPI 266 (382)
T ss_pred CEEEEEECC--cHHHHHHHHHHCCCeEEEEcCC---CC-HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCE
Confidence 468888663 3334566666667754333332 11 11122236899999753222 22 334444458999
Q ss_pred eeec
Q 021262 149 IAFC 152 (315)
Q Consensus 149 IAL~ 152 (315)
+|+|
T Consensus 267 lGIC 270 (382)
T CHL00197 267 FGIC 270 (382)
T ss_pred EEEc
Confidence 9998
No 204
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.20 E-value=73 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=23.6
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 117 ~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
...-..||+||...-..+...+..-...|||++.+
T Consensus 64 ~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 64 LIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred HHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 33346899988754322223666678899999887
No 205
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=26.18 E-value=1.6e+02 Score=32.39 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=42.8
Q ss_pred CCCcEEEEccC-chhHHHHHHHHHHhCCcc--ccCCccCCccCccccccccCCceEEEeC-CCC-----CchhHHHhhhc
Q 021262 74 NPGDIIVQSAR-PYGQRAVLKFAKYTHAHA--IAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT-----DHQPIKEAALG 144 (315)
Q Consensus 74 n~~~IlfVstr-~~~q~aV~kfA~~tga~~--i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~~-----d~qaI~EAs~l 144 (315)
.+.+||+|.+- .+.+.++..+.+.+|.-+ +.-+. ..++.-....+..+|.|||.. |.. +...++|+...
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~--d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~ 81 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHS--DTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWEL 81 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeC--CCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHh
Confidence 45678888765 455666666666655321 11111 111111111245678888863 332 23356677665
Q ss_pred C----CCceeecc
Q 021262 145 N----IPTIAFCD 153 (315)
Q Consensus 145 n----IPtIAL~D 153 (315)
+ ||+.|||=
T Consensus 82 ~~~~~iPvLGICl 94 (742)
T TIGR01823 82 ANLDEVPVLGICL 94 (742)
T ss_pred cccCCCcEEEEch
Confidence 4 99999984
No 206
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.13 E-value=2e+02 Score=24.69 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=11.8
Q ss_pred HHHhhhcCCCceeecc
Q 021262 138 IKEAALGNIPTIAFCD 153 (315)
Q Consensus 138 I~EAs~lnIPtIAL~D 153 (315)
.++....++|++|+|-
T Consensus 63 ~~~~~~~~~PilGIC~ 78 (181)
T cd01742 63 DPEIFELGVPVLGICY 78 (181)
T ss_pred hHHHHhcCCCEEEEcH
Confidence 4566666999999983
No 207
>PLN02501 digalactosyldiacylglycerol synthase
Probab=26.09 E-value=1.7e+02 Score=32.61 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCC
Q 021262 53 INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (315)
Q Consensus 53 INL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~ 132 (315)
+.-.|=+..|..|+..+..-...-++++||..+... -+++.+...|.. + .|++|. +.....+..-|+.|+....
T Consensus 555 La~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~re-eLe~la~eLgL~-V--~FLG~~--dd~~~lyasaDVFVlPS~s 628 (794)
T PLN02501 555 MVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAH-EVQRAAKRLDLN-L--NFLKGR--DHADDSLHGYKVFINPSIS 628 (794)
T ss_pred ccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHH-HHHHHHHHcCCE-E--EecCCC--CCHHHHHHhCCEEEECCCc
Confidence 344555666777766554321234677888877544 356667666643 2 466552 2222235556766665543
Q ss_pred CC-chhHHHhhhcCCCceeec
Q 021262 133 TD-HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 133 ~d-~qaI~EAs~lnIPtIAL~ 152 (315)
+. -..+.||.-+|+|||+--
T Consensus 629 EgFGlVlLEAMA~GlPVVATd 649 (794)
T PLN02501 629 DVLCTATAEALAMGKFVVCAD 649 (794)
T ss_pred ccchHHHHHHHHcCCCEEEec
Confidence 33 567889999999999973
No 208
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.08 E-value=2.2e+02 Score=25.32 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=33.3
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCCCCC-CcceEEecCCCCCcchHHHHHHHHHHH
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLARM 185 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~Nnds~~SI~li~~lLara 185 (315)
+.+|.+|+.....+ ...+.++...+||+|.+ |...+. .++.+ |-.| ...+-..+..+|.+.
T Consensus 54 ~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~~-v~~d--~~~~g~~~~~~l~~~ 117 (277)
T cd06319 54 KGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA-DIGAEGGDYVSY-IKSD--NYEGAYDLGKFLAAA 117 (277)
T ss_pred cCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE-ecCCCCCceEEE-Eeec--cHHHHHHHHHHHHHH
Confidence 34677776543322 35678888999999975 544322 23333 3333 334444444555443
No 209
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=25.97 E-value=2.4e+02 Score=29.66 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~e 122 (315)
.+..++..|..-+++ +++++.. ......+.+||+++|+..++.-.-.|.|-+-. ...+.+
T Consensus 220 ~i~~~~~~L~~AkrP--lIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~ 297 (612)
T PRK07789 220 QIREAAKLIAAARRP--VLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQR 297 (612)
T ss_pred HHHHHHHHHHhCCCC--EEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHHHh
Confidence 355555555543333 4555443 24678899999999998765422223333211 112578
Q ss_pred CceEEEeCCCCCc
Q 021262 123 PRLLILTDPRTDH 135 (315)
Q Consensus 123 P~lLIV~DP~~d~ 135 (315)
.|+||++..+-+.
T Consensus 298 aDlvL~lG~~l~~ 310 (612)
T PRK07789 298 SDLLIALGARFDD 310 (612)
T ss_pred CCEEEEECCCCCc
Confidence 9999999987653
No 210
>PRK11269 glyoxylate carboligase; Provisional
Probab=25.86 E-value=2.3e+02 Score=29.70 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHhCCccccCCccCCccCcc--------------c--ccccc
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--------------M--QTSFN 121 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst---r~~~q~aV~kfA~~tga~~i~grw~pGtLTN~--------------~--~~~f~ 121 (315)
.+.++++.|..-++| +++++. +....+.+.+||+++|...++.---.|.|-+. . ...+.
T Consensus 192 ~i~~~~~~L~~AkrP--vil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~ 269 (591)
T PRK11269 192 QIEKALEMLNAAERP--LIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLL 269 (591)
T ss_pred HHHHHHHHHHhCCCc--EEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHHHH
Confidence 355556655544333 555554 23567889999999998766432222333211 0 11257
Q ss_pred CCceEEEeCCCCC
Q 021262 122 EPRLLILTDPRTD 134 (315)
Q Consensus 122 eP~lLIV~DP~~d 134 (315)
+.|+||++..+-+
T Consensus 270 ~aDlvl~lG~~~~ 282 (591)
T PRK11269 270 ASDFVLGIGNRWA 282 (591)
T ss_pred hCCEEEEeCCCCC
Confidence 8999999997744
No 211
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=25.66 E-value=1.9e+02 Score=25.98 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=23.2
Q ss_pred cCCceEEEeCCC--CCchhHHHhhhcCCCceeec
Q 021262 121 NEPRLLILTDPR--TDHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 121 ~eP~lLIV~DP~--~d~qaI~EAs~lnIPtIAL~ 152 (315)
+.+|.||+.... .....++++...|||+|.+-
T Consensus 53 ~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 53 QGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cCCCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 457878776543 23456899999999999873
No 212
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.61 E-value=2.3e+02 Score=24.56 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=24.6
Q ss_pred ccCCceEEEeCCCCC------------chhHHHhhhcCCCceeeccC
Q 021262 120 FNEPRLLILTDPRTD------------HQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 120 f~eP~lLIV~DP~~d------------~qaI~EAs~lnIPtIAL~DT 154 (315)
+...|.||++.-..+ ...|+++...++|++|+|-.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G 90 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLG 90 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECcc
Confidence 456788888763322 23567888889999999853
No 213
>PRK12362 germination protease; Provisional
Probab=25.33 E-value=4.2e+02 Score=26.44 Aligned_cols=44 Identities=30% Similarity=0.322 Sum_probs=31.6
Q ss_pred cCCceEEEeCCCC--------------------------CchhHHHhhhcCCCceeeccCCCCCCcceEEecCCC
Q 021262 121 NEPRLLILTDPRT--------------------------DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (315)
Q Consensus 121 ~eP~lLIV~DP~~--------------------------d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nn 169 (315)
..|++||.+|... ++..|.| ..+|+||||+- -|..||-+.-+||
T Consensus 171 ~kpd~IIAIDALaar~~~Rl~~tIQisdtGI~PGSGVGN~R~~l~~-etLGVPVIAIG----VPTVVdAatI~~D 240 (318)
T PRK12362 171 IKPDLVIAIDALAARSVERVNTTIQISDTGISPGSGVGNKRMGINE-ETLGVPVIAIG----VPTVVDAATIAND 240 (318)
T ss_pred cCCCEEEEEeccccCCHHHccCeEEECCCCCCCCccCCCcccccCH-HHcCCCEEEEc----CCeeechHHHHHH
Confidence 5899999999433 3667777 45799999983 3456777776765
No 214
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=25.33 E-value=2.8e+02 Score=29.03 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~e 122 (315)
.+.+++..|..-++| +++++.. ....+.+.+||+++|+..++.-.-.|.|-+-. ...+.+
T Consensus 206 ~v~~a~~~L~~AkrP--vil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~ 283 (585)
T CHL00099 206 RIEQAAKLILQSSQP--LLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSE 283 (585)
T ss_pred HHHHHHHHHHcCCCc--EEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHh
Confidence 455566665544333 4455443 35678899999999987665433334442211 112478
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+|+++..+-+
T Consensus 284 aDlvL~lG~~~~ 295 (585)
T CHL00099 284 CDLLIALGARFD 295 (585)
T ss_pred CCEEEEECCCCc
Confidence 999999998754
No 215
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.16 E-value=1.7e+02 Score=26.15 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=23.2
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeec
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~ 152 (315)
+..|.||+.....+ ...++++...|||+|.+-
T Consensus 56 ~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 56 AKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 35688877765433 356888888999999883
No 216
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.09 E-value=1.8e+02 Score=25.64 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=19.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcC--CC----ceeeccCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGN--IP----TIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~ln--IP----tIAL~DTd 155 (315)
..|+.|++.+...-.-+++.....| +| +|++-++.
T Consensus 177 ~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~~~ 217 (268)
T cd06273 177 PRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDDID 217 (268)
T ss_pred CCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCChh
Confidence 4588888876443333444444444 45 77766543
No 217
>PRK05637 anthranilate synthase component II; Provisional
Probab=25.09 E-value=1.8e+02 Score=26.58 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=34.8
Q ss_pred cEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-CCCCchh-----HHHhhhcCCCcee
Q 021262 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRTDHQP-----IKEAALGNIPTIA 150 (315)
Q Consensus 77 ~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~~d~qa-----I~EAs~lnIPtIA 150 (315)
+|++|........-+...-++.|.....-++- .+ .....-..|+.||+.. |..-..+ +-+....++|++|
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~---~~-~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLG 78 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT---VP-VEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLG 78 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC---CC-HHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEE
Confidence 57777775544444444445556554332221 11 1111123578887754 3332221 2222223789998
Q ss_pred ec
Q 021262 151 FC 152 (315)
Q Consensus 151 L~ 152 (315)
+|
T Consensus 79 IC 80 (208)
T PRK05637 79 IC 80 (208)
T ss_pred Ec
Confidence 87
No 218
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=24.98 E-value=4e+02 Score=27.53 Aligned_cols=72 Identities=13% Similarity=0.247 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCcccc--------ccccCCceEEEe
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILT 129 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~--------~~f~eP~lLIV~ 129 (315)
.+.+++..|.+-++| +++++.. ....+.+.+|++++|...++.-.--|.|-+-.. ..+.+-|+||++
T Consensus 195 ~~~~~~~~L~~AkrP--vi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~l 272 (554)
T TIGR03254 195 SVDRAVELLKDAKRP--LILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLV 272 (554)
T ss_pred HHHHHHHHHHhCCCC--EEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEE
Confidence 355555555544333 5666543 346788999999999987765433454443211 136789999999
Q ss_pred CCCCC
Q 021262 130 DPRTD 134 (315)
Q Consensus 130 DP~~d 134 (315)
..+-+
T Consensus 273 G~~~~ 277 (554)
T TIGR03254 273 GARLN 277 (554)
T ss_pred CCCCc
Confidence 97754
No 219
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=24.97 E-value=2e+02 Score=25.33 Aligned_cols=71 Identities=3% Similarity=0.051 Sum_probs=39.9
Q ss_pred CcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeC-CCC--C----chhHHHhhhcCCCc
Q 021262 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT--D----HQPIKEAALGNIPT 148 (315)
Q Consensus 76 ~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~D-P~~--d----~qaI~EAs~lnIPt 148 (315)
.+||+|........-|....++.|.....-+...+.+ ..+...|.|||+. |.. + ...|++ ...++|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~-----~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~~~~~Pi 75 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDL-----DEVENFSHILISPGPDVPRAYPQLFAMLER-YHQHKSI 75 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccCh-----hHhccCCEEEECCCCCChHHhhHHHHHHHH-hcCCCCE
Confidence 3588887766544447777777787654444332221 1223457777773 441 1 223333 3458899
Q ss_pred eeec
Q 021262 149 IAFC 152 (315)
Q Consensus 149 IAL~ 152 (315)
+|+|
T Consensus 76 LGIC 79 (190)
T PRK06895 76 LGVC 79 (190)
T ss_pred EEEc
Confidence 9987
No 220
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.96 E-value=2.7e+02 Score=28.91 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHhCCccccCCccCCccCccc---------------ccccc
Q 021262 60 EKLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFN 121 (315)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~IlfVst--r-~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~ 121 (315)
+.+..++..|..-++| +++++. + ....+.+.+||+++|+..++.----|.|..-. ...+.
T Consensus 191 ~~i~~~~~~L~~A~rP--viv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~ 268 (563)
T PRK08527 191 RQIKKAAEAIKEAKKP--LFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMS 268 (563)
T ss_pred HHHHHHHHHHHcCCCC--EEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHHHH
Confidence 3456666666554443 455543 2 24678999999999987765432234443221 11257
Q ss_pred CCceEEEeCCCCC
Q 021262 122 EPRLLILTDPRTD 134 (315)
Q Consensus 122 eP~lLIV~DP~~d 134 (315)
+.|+||++..+-+
T Consensus 269 ~aD~vl~lG~~l~ 281 (563)
T PRK08527 269 ECDLLISLGARFD 281 (563)
T ss_pred hCCEEEEeCCCCC
Confidence 8999999997754
No 221
>PRK09939 putative oxidoreductase; Provisional
Probab=24.73 E-value=3.4e+02 Score=29.93 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=69.2
Q ss_pred HHHHHHHcCce-eccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCch---hHHHHHH
Q 021262 18 DIQMMLAAEVH-LGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPY---GQRAVLK 93 (315)
Q Consensus 18 ~i~kLLaAgvH-lG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~---~q~aV~k 93 (315)
++..|..-+-| |.+.. --..|.++.+..+...-|..+.-+. ..+.-|..+..+..|.|.++... ...+..+
T Consensus 91 ~~~~l~~~~~~~l~~~~--RL~~Pl~r~~g~~~~~~ISWdEAl~---~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~ 165 (759)
T PRK09939 91 TVQSLLTWGDHELEAAG--RLTQPLKYDAVSDCYKPLSWQQAFD---EIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQL 165 (759)
T ss_pred cHHHHhhhcccccCCCC--cccCCeEecCCCCcEEEccHHHHHH---HHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHH
Confidence 45555544333 33321 1122333433333455566665433 34444555655777877754332 3356788
Q ss_pred HHHHhCCccccC----Cc----------cC-CccCccccccccCCceEEEe--CCCCCch----hHHHhhhcCCCceeec
Q 021262 94 FAKYTHAHAIAG----RH----------TP-GTFTNQMQTSFNEPRLLILT--DPRTDHQ----PIKEAALGNIPTIAFC 152 (315)
Q Consensus 94 fA~~tga~~i~g----rw----------~p-GtLTN~~~~~f~eP~lLIV~--DP~~d~q----aI~EAs~lnIPtIAL~ 152 (315)
|+...|...+.. |. ++ |..|+... -|..-|+||++ ||..+|. -|++|.+-|..+|.|
T Consensus 166 f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~-Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvI- 243 (759)
T PRK09939 166 FAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLE-DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAI- 243 (759)
T ss_pred HHHHhCCcccCCCCCCCchHHHHHHHHhcCCCCCCCCHH-HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEE-
Confidence 888888754421 11 11 23333221 24667888888 5655542 356888888887776
Q ss_pred cC
Q 021262 153 DT 154 (315)
Q Consensus 153 DT 154 (315)
|.
T Consensus 244 DP 245 (759)
T PRK09939 244 NP 245 (759)
T ss_pred CC
Confidence 54
No 222
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=24.71 E-value=2.8e+02 Score=30.03 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=74.7
Q ss_pred cceeeecCCccccC--HHHHHHHHHHHHHHHHHhhCCCcEEEE-cc--CchhHHHHHHHHHHhCCccccCCccCCccCcc
Q 021262 41 YVFKRRNDGIYIIN--LGKTWEKLQMAARVIVAIENPGDIIVQ-SA--RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ 115 (315)
Q Consensus 41 YIyg~R~dGi~IIN--L~kT~ekL~~Aa~~I~~I~n~~~IlfV-st--r~~~q~aV~kfA~~tga~~i~grw~pGtLTN~ 115 (315)
+||.+-+ |..-|+ +-.+|-+++++ -|+.+|.+ .. +.....-+...|++.|.-+--=||.|=.=+-.
T Consensus 431 vVf~c~~-n~~K~~pev~~~wmqIL~~--------vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 431 VVFCCFN-NYFKITPEVFALWMQILSA--------VPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred EEEEecC-CcccCCHHHHHHHHHHHHh--------CCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 7777775 444454 44555555432 46777776 33 45667778889999998887777877554444
Q ss_pred ccccccCCceEEEeCCCCCchhHHHhhhcCCCceeec
Q 021262 116 MQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 116 ~~~~f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (315)
...++..-|++.=|=|-.-|.-.-|+..+|+||+..+
T Consensus 502 h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 502 HRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred HHHhhchhheeeecccCCCccchHHHHHhcCceeeec
Confidence 4456788898877779999999999999999999874
No 223
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=24.68 E-value=67 Score=32.25 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=28.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNK 170 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnd 170 (315)
.-||||+++|..+-.-.-+|..+-|-- .+-++|||+|.
T Consensus 294 ~~PDLI~lld~~Tg~piTTe~lkyG~r------------V~V~aIP~~~~ 331 (357)
T COG3535 294 TTPDLIVLLDLNTGLPITTESLKYGQR------------VVVIAIPAPDL 331 (357)
T ss_pred ecCceEEEEecCCCCccchHHhhcCcE------------EEEEEecCcch
Confidence 589999999998765555666666643 45679999974
No 224
>PLN02470 acetolactate synthase
Probab=24.66 E-value=2.8e+02 Score=28.94 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCc-hhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccCCc
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEPR 124 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~-~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~eP~ 124 (315)
.+..++..|.+-++| +++++..- .....+.+||+++|+..++.---.|.|-... ...+.+.|
T Consensus 204 ~i~~~~~~L~~A~rP--vI~~G~g~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aD 281 (585)
T PLN02470 204 QLEQIVRLISESKRP--VVYVGGGCLNSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSAD 281 (585)
T ss_pred HHHHHHHHHHcCCCC--EEEECCChhhhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCC
Confidence 466666666544333 56666643 4567899999999987664332334443211 11257899
Q ss_pred eEEEeCCCCC
Q 021262 125 LLILTDPRTD 134 (315)
Q Consensus 125 lLIV~DP~~d 134 (315)
+|+++..+-+
T Consensus 282 lvl~lG~~l~ 291 (585)
T PLN02470 282 LLLAFGVRFD 291 (585)
T ss_pred EEEEECCCCc
Confidence 9999997654
No 225
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=24.38 E-value=1.2e+02 Score=27.29 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCc-cccCC--ccC-CccCccccccccCCceEEEeCCCCCchhHHH
Q 021262 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGR--HTP-GTFTNQMQTSFNEPRLLILTDPRTDHQPIKE 140 (315)
Q Consensus 65 Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~-~i~gr--w~p-GtLTN~~~~~f~eP~lLIV~DP~~d~qaI~E 140 (315)
+..+|..+++.+++.+||+.. +..+..+++..|.. ++..+ ... |.+|-... ..+......+++
T Consensus 73 a~ell~~lk~~~~~~IVS~~~--~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-----------~~~~~K~~~l~~ 139 (203)
T TIGR02137 73 AVEFVDWLRERFQVVILSDTF--YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-----------RQKDPKRQSVIA 139 (203)
T ss_pred HHHHHHHHHhCCeEEEEeCCh--HHHHHHHHHHcCCchhhceeeEEecCCeeECeee-----------cCcchHHHHHHH
Confidence 455666664446888888774 34667778888864 23222 112 44443211 112223345666
Q ss_pred hhhcCCCceeeccCCCCCCc---ceEEecCCC
Q 021262 141 AALGNIPTIAFCDTDSPMRY---VDIGIPANN 169 (315)
Q Consensus 141 As~lnIPtIAL~DTds~~~~---VD~pIP~Nn 169 (315)
....+..++++-|+.+|+.. ++++|-.|-
T Consensus 140 l~~~~~~~v~vGDs~nDl~ml~~Ag~~ia~~a 171 (203)
T TIGR02137 140 FKSLYYRVIAAGDSYNDTTMLSEAHAGILFHA 171 (203)
T ss_pred HHhhCCCEEEEeCCHHHHHHHHhCCCCEEecC
Confidence 66677789999999887653 666666654
No 226
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=24.26 E-value=9.3e+02 Score=26.08 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=68.7
Q ss_pred hhCCCcEEEEccCchh---HHHHHHHHHHhC---CccccCCccCCccCccccccccCCceEEEeCCCCC-----chhHHH
Q 021262 72 IENPGDIIVQSARPYG---QRAVLKFAKYTH---AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKE 140 (315)
Q Consensus 72 I~n~~~IlfVstr~~~---q~aV~kfA~~tg---a~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-----~qaI~E 140 (315)
+.+..+++|+|..... .+.-+|+-+-+= .-|-+|-+..|.+- -+.+=-.||++.|..+ ..-|+|
T Consensus 452 l~~~~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiA-----Lid~~~pVi~i~p~~~~~ek~~sni~E 526 (597)
T COG0449 452 LADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIA-----LIDENTPVIAIAPKPDLFEKTKSNIQE 526 (597)
T ss_pred hcccCCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceE-----EEcCCCcEEEEeCcchHHHHHHHHHHH
Confidence 4567889999887543 333333333221 11234444444321 1112223555555553 467899
Q ss_pred hhhcCCCceeeccCCC--CCCcceEEecCCCCCcchHHHH--HHHHHHHHHHhhcCC
Q 021262 141 AALGNIPTIAFCDTDS--PMRYVDIGIPANNKGKHSIGCL--FWLLARMVLQMRGTI 193 (315)
Q Consensus 141 As~lnIPtIAL~DTds--~~~~VD~pIP~Nnds~~SI~li--~~lLaraVl~~rg~i 193 (315)
....+-.+|.++|.+. .-..+.+-+|-.++-...+-.+ ++||+-.+--.||..
T Consensus 527 v~aRg~~~i~i~~~~~~~~~~~~~i~~p~~~e~laPi~~~iPlQLLAY~iA~~kG~d 583 (597)
T COG0449 527 VRARGGKIIVIADEGDVAEDGDDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGID 583 (597)
T ss_pred HHcCCCeEEEEecCCcccccCceEEecCCCcchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999764 2233445556666544444333 788888888888874
No 227
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=24.19 E-value=3.4e+02 Score=23.83 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-chh
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-HQP 137 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-~qa 137 (315)
.+.|..|++.+......-.+++++..... ..+.+..+..+... .-++.+ . .......++.-|++|...-... ...
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~-~v~~~g-~-~~~~~~~~~~ad~~i~ps~~e~~~~~ 268 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPER-EALEALIKELGLED-RVILLG-F-TKNIEEYYAKASIFVLTSRFEGFPMV 268 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCH-HHHHHHHHHcCCCC-eEEEcC-C-cchHHHHHHhCCEEEeCccccccCHH
Confidence 33444455444432223456666765443 33444455444321 112333 2 2222233456677665542211 467
Q ss_pred HHHhhhcCCCceee
Q 021262 138 IKEAALGNIPTIAF 151 (315)
Q Consensus 138 I~EAs~lnIPtIAL 151 (315)
+.||...|+|+|+-
T Consensus 269 ~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 269 LLEAMAFGLPVISF 282 (348)
T ss_pred HHHHHHcCCCEEEe
Confidence 89999999999974
No 228
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.15 E-value=1.9e+02 Score=25.80 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.2
Q ss_pred chhHHHhhhcCCCceeeccC
Q 021262 135 HQPIKEAALGNIPTIAFCDT 154 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DT 154 (315)
.+.|+++...++|+.|+|-.
T Consensus 61 ~~~i~~~~~~~~PilgIC~G 80 (200)
T PRK13143 61 RDVILEAARSGKPFLGICLG 80 (200)
T ss_pred HHHHHHHHHcCCCEEEECHH
Confidence 45678888889999999864
No 229
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.11 E-value=2e+02 Score=25.65 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=8.6
Q ss_pred hhhcCCCceeec
Q 021262 141 AALGNIPTIAFC 152 (315)
Q Consensus 141 As~lnIPtIAL~ 152 (315)
....++|++++|
T Consensus 66 i~~~~~PilGIC 77 (196)
T PRK13170 66 IKACTQPVLGIC 77 (196)
T ss_pred HHHcCCCEEEEC
Confidence 334578999887
No 230
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=23.99 E-value=1.3e+02 Score=28.13 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=26.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
+..|-||+.....+...++++...|||+|.+.|.+
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~ 152 (331)
T PRK14987 118 WNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQ 152 (331)
T ss_pred cCCCEEEEcCCCCCHHHHHHHHhCCCCEEEEecCC
Confidence 46788888765445567888888999999886654
No 231
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.86 E-value=2.4e+02 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
..|-+|++.+..+...+++..+.++|+|.+
T Consensus 56 ~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i 85 (269)
T cd06287 56 DIDGAILVEPMADDPQVARLRQRGIPVVSI 85 (269)
T ss_pred CcCeEEEecCCCCCHHHHHHHHcCCCEEEe
Confidence 478888877655556678888889999988
No 232
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=23.52 E-value=2.1e+02 Score=25.52 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=22.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~DTd 155 (315)
+.+|.||+.....+ ...++++.. +||+|.+ |.+
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~ 88 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSD 88 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCC
Confidence 34787777643322 467788888 9999987 443
No 233
>PRK13818 ribosome-binding factor A; Provisional
Probab=23.45 E-value=88 Score=26.47 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=37.7
Q ss_pred CceeeccCCCCCCc--ceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcc
Q 021262 147 PTIAFCDTDSPMRY--VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE 212 (315)
Q Consensus 147 PtIAL~DTds~~~~--VD~pIP~Nnds~~SI~li~~lLaraVl~~rg~i~~~~~w~v~~dl~fyrdpe 212 (315)
.+|.=|+-..|+++ |-|-+-+.+ .....-+...|-++--..|..+++.-.|..+|.|-||-|..
T Consensus 32 vtVt~V~lS~Dl~~AkVyvs~~~~~--~~~~~~~~~~L~~a~g~iR~~la~~l~lR~~P~L~F~~D~s 97 (121)
T PRK13818 32 VTITAVECTNDLSYATVYYSLLTED--EAKEKEVQEGLEKAKGMMRHLLGQTLTVYKVPELIFKRDNS 97 (121)
T ss_pred eEEeEEEECCCCCEEEEEEEeCCCc--hhHHHHHHHHHHHhHHHHHHHHHhhCCCeECCEEEEEeCCC
Confidence 44555555666665 444444421 22222222335555556666666667799999999999876
No 234
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=23.15 E-value=2.4e+02 Score=27.81 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCcc-ccccccCCceEEEeCCC--
Q 021262 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR-- 132 (315)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~-~~~~f~eP~lLIV~DP~-- 132 (315)
.|=++.|..|+..+..-...-++.++|..+.. .-+++.++..|..-. -.|+ |..++. ....++.-|++|+..-.
T Consensus 234 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~-~~l~~~~~~~~l~~~-V~~~-G~~~~~el~~~l~~aDv~v~pS~~~~ 310 (406)
T PRK15427 234 KKGLHVAIEACRQLKEQGVAFRYRILGIGPWE-RRLRTLIEQYQLEDV-VEMP-GFKPSHEVKAMLDDADVFLLPSVTGA 310 (406)
T ss_pred hcCHHHHHHHHHHHHhhCCCEEEEEEECchhH-HHHHHHHHHcCCCCe-EEEe-CCCCHHHHHHHHHhCCEEEECCccCC
Confidence 34445566666555432123456677776543 345666776654210 1233 444432 22335667887765421
Q ss_pred ---CC--chhHHHhhhcCCCceeeccCCCCCCcc
Q 021262 133 ---TD--HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (315)
Q Consensus 133 ---~d--~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (315)
.+ ...+.||..+|+|||+- |....++.|
T Consensus 311 ~g~~Eg~p~~llEAma~G~PVI~t-~~~g~~E~v 343 (406)
T PRK15427 311 DGDMEGIPVALMEAMAVGIPVVST-LHSGIPELV 343 (406)
T ss_pred CCCccCccHHHHHHHhCCCCEEEe-CCCCchhhh
Confidence 12 25688999999999985 333334443
No 235
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.91 E-value=2e+02 Score=28.86 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcc-ccCCccCCccCccccc------------cccCCceEE
Q 021262 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRHTPGTFTNQMQT------------SFNEPRLLI 127 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~-i~grw~pGtLTN~~~~------------~f~eP~lLI 127 (315)
+......+|..+++.|..+.|.+|.++. |.++-...|-.| +-|+.-+++|+..-.. .-..|++.+
T Consensus 12 hvhfFk~lI~elekkG~ev~iT~rd~~~--v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i 89 (346)
T COG1817 12 HVHFFKNLIWELEKKGHEVLITCRDFGV--VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAI 89 (346)
T ss_pred hhhHHHHHHHHHHhCCeEEEEEEeecCc--HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 3456677788888888888888887663 556677777655 4567766777743211 114788776
Q ss_pred EeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
=. .+..+=+=+.-+|||.|.+.||-.
T Consensus 90 ~~---~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 90 GK---HSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred ec---CCcchhhHHhhcCCceEEecCChh
Confidence 52 244556778889999999999854
No 236
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.79 E-value=6.4e+02 Score=24.13 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=43.7
Q ss_pred CCcEEEEccC-chhH---HHHHHHHHHhCCccccCCccCCccCccc---c-ccccCCceEEEeCCCCC-chhHHHhhhcC
Q 021262 75 PGDIIVQSAR-PYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQM---Q-TSFNEPRLLILTDPRTD-HQPIKEAALGN 145 (315)
Q Consensus 75 ~~~IlfVstr-~~~q---~aV~kfA~~tga~~i~grw~pGtLTN~~---~-~~f~eP~lLIV~DP~~d-~qaI~EAs~ln 145 (315)
..+|-+|..+ .+++ +.+.+.++..|...+..-+.+-.-|++. + .+-..||+|++.....+ ...++++...|
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G 219 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVG 219 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcC
Confidence 5677776543 3444 3444556666776655544443334443 1 22367999988765544 45678888888
Q ss_pred CC
Q 021262 146 IP 147 (315)
Q Consensus 146 IP 147 (315)
+.
T Consensus 220 ~~ 221 (351)
T cd06334 220 LD 221 (351)
T ss_pred CC
Confidence 74
No 237
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.76 E-value=2.9e+02 Score=25.49 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=53.1
Q ss_pred HHHHHHHHh-hCCCcEEEE-ccCchhHHHHHHHHHHhCCccccCCccC-CccCcccccc-ccCCceEEEeCCCCCchhHH
Q 021262 64 MAARVIVAI-ENPGDIIVQ-SARPYGQRAVLKFAKYTHAHAIAGRHTP-GTFTNQMQTS-FNEPRLLILTDPRTDHQPIK 139 (315)
Q Consensus 64 ~Aa~~I~~I-~n~~~IlfV-str~~~q~aV~kfA~~tga~~i~grw~p-GtLTN~~~~~-f~eP~lLIV~DP~~d~qaI~ 139 (315)
.|..+...+ +.+-+++=| -+.+++.++|.++.+.... ..++ ||.++-.+.. ..+-..=|++-|..+...++
T Consensus 28 ~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~-----~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~ 102 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPE-----ALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLK 102 (212)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCC-----CEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 344444444 444555544 3456788888888776432 3333 8888876643 23334445677888889999
Q ss_pred HhhhcCCCce
Q 021262 140 EAALGNIPTI 149 (315)
Q Consensus 140 EAs~lnIPtI 149 (315)
.|...+||.+
T Consensus 103 ~a~~~~i~~i 112 (212)
T PRK05718 103 AAQEGPIPLI 112 (212)
T ss_pred HHHHcCCCEe
Confidence 9999999998
No 238
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=22.66 E-value=1.7e+02 Score=26.09 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=43.9
Q ss_pred HHHHHHhhCC-CcEEEEccCch-hHHHHHHHHHHhCCccccCCccCCccCccccc--cccCCceEEEeCCCCCchhHHHh
Q 021262 66 ARVIVAIENP-GDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT--SFNEPRLLILTDPRTDHQPIKEA 141 (315)
Q Consensus 66 a~~I~~I~n~-~~IlfVstr~~-~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~--~f~eP~lLIV~DP~~d~qaI~EA 141 (315)
+.++..+.+. -.|+|++.... .+..+.++.+......++ +.|. ||-.+. -++.-+++|-.|. -+++=|
T Consensus 127 ~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~l~e~~ali~~a~~~I~~Dt----g~~HlA 198 (247)
T PF01075_consen 127 AELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVIN---LAGK-TSLRELAALISRADLVIGNDT----GPMHLA 198 (247)
T ss_dssp HHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEE---ETTT-S-HHHHHHHHHTSSEEEEESS----HHHHHH
T ss_pred HHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEe---ecCC-CCHHHHHHHHhcCCEEEecCC----hHHHHH
Confidence 4445566333 47888877766 455555555544322111 2232 232221 2478899998886 577778
Q ss_pred hhcCCCceeeccC
Q 021262 142 ALGNIPTIAFCDT 154 (315)
Q Consensus 142 s~lnIPtIAL~DT 154 (315)
.-+|+|+|+|--.
T Consensus 199 ~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 199 AALGTPTVALFGP 211 (247)
T ss_dssp HHTT--EEEEESS
T ss_pred HHHhCCEEEEecC
Confidence 8899999999643
No 239
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=22.26 E-value=2.1e+02 Score=26.43 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=23.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceeeccCC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (315)
+..|-||++.+..+...+.+....+||+|.+ |..
T Consensus 114 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~ 147 (329)
T TIGR01481 114 KQVDGIIFMGGTITEKLREEFSRSPVPVVLA-GTV 147 (329)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhcCCCEEEE-ecC
Confidence 4678888876554444556677789999966 443
No 240
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=22.09 E-value=2.3e+02 Score=26.56 Aligned_cols=87 Identities=22% Similarity=0.103 Sum_probs=59.8
Q ss_pred HHHHHHHHHh-hCCCcEEEE-ccCchhHHHHHHHHHHhCCccccCCccC-CccCcccccc-ccCCceEEEeCCCCCchhH
Q 021262 63 QMAARVIVAI-ENPGDIIVQ-SARPYGQRAVLKFAKYTHAHAIAGRHTP-GTFTNQMQTS-FNEPRLLILTDPRTDHQPI 138 (315)
Q Consensus 63 ~~Aa~~I~~I-~n~~~IlfV-str~~~q~aV~kfA~~tga~~i~grw~p-GtLTN~~~~~-f~eP~lLIV~DP~~d~qaI 138 (315)
..|..+..++ +.+-+.+=| -+.+...++|..+++..+ +.-+| ||..|..|.. ...-..=+++.|+-+...+
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-----~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~ 99 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-----EALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVA 99 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-----ccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 3455555554 666555544 445678889998888876 23344 9999988753 1233445678999999999
Q ss_pred HHhhhcCCCceeeccC
Q 021262 139 KEAALGNIPTIAFCDT 154 (315)
Q Consensus 139 ~EAs~lnIPtIAL~DT 154 (315)
+=|...+||++==|-|
T Consensus 100 ~~a~~~~ip~~PG~~T 115 (211)
T COG0800 100 KAANRYGIPYIPGVAT 115 (211)
T ss_pred HHHHhCCCcccCCCCC
Confidence 9999999998644433
No 241
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=21.95 E-value=3.5e+02 Score=23.67 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=32.2
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCC---CceeeccCCCC-------CCcceEEecCCCCCcchHHHHH
Q 021262 122 EPRLLILTDPRTDHQPIKEAALGNI---PTIAFCDTDSP-------MRYVDIGIPANNKGKHSIGCLF 179 (315)
Q Consensus 122 eP~lLIV~DP~~d~qaI~EAs~lnI---PtIAL~DTds~-------~~~VD~pIP~Nnds~~SI~li~ 179 (315)
.|+.+++.+-..=..+++.+...|+ .+|++-|+... +....+..+.+.-+..++.+++
T Consensus 181 ~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~ 248 (268)
T cd06323 181 DIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGTPDALKAIKAGKMAATVAQQPALMGRLAVETAD 248 (268)
T ss_pred CcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcCCeeEEEecChHHHHHHHHHHHH
Confidence 4678777665443345666666655 78887665431 2234455555544444444443
No 242
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.91 E-value=4.4e+02 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.0
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 120 f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
++.-+++|-.|. -+++=|.-+|+|||+|.-..+
T Consensus 252 i~~a~l~I~~DS----gp~HlAaa~g~P~i~lfg~t~ 284 (319)
T TIGR02193 252 LAGADAVVGVDT----GLTHLAAALDKPTVTLYGATD 284 (319)
T ss_pred HHcCCEEEeCCC----hHHHHHHHcCCCEEEEECCCC
Confidence 366788886665 577778899999999986543
No 243
>PRK11018 hypothetical protein; Provisional
Probab=21.89 E-value=1.9e+02 Score=22.20 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=26.9
Q ss_pred HHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCcccc
Q 021262 67 RVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (315)
Q Consensus 67 ~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~ 104 (315)
+.+..+..+..+.++.+.+...+-|..+++..|...+.
T Consensus 27 k~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 27 EALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred HHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 33344544444567788888888899999999887653
No 244
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=21.84 E-value=3.4e+02 Score=23.86 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=39.9
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-chhHHHhhhcCCCceee
Q 021262 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-HQPIKEAALGNIPTIAF 151 (315)
Q Consensus 75 ~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-~qaI~EAs~lnIPtIAL 151 (315)
.-++.+++..+... .+.+..+..+... .-+|++ ...+ ...-++.-|++|....... ...+-||...|+|+|+-
T Consensus 220 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~-~v~~~g-~~~~-~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~ 293 (353)
T cd03811 220 DARLVILGDGPLRE-ELEALAKELGLAD-RVHFLG-FQSN-PYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVAT 293 (353)
T ss_pred CceEEEEcCCccHH-HHHHHHHhcCCCc-cEEEec-ccCC-HHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEc
Confidence 45666777655433 3445555554321 112333 2333 2223455677665543221 45788999999999984
No 245
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=21.75 E-value=1.5e+02 Score=26.10 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=22.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCceee
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL 151 (315)
+.+|.||++....+...+..+...+||+|.+
T Consensus 54 ~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 54 QKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred cCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 3478888876544445667777779999988
No 246
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.66 E-value=1.1e+02 Score=26.97 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=27.6
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCceeeccCCC
Q 021262 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 120 f~eP~lLIV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
-..|||||..+-......+.+-...+||++.+-..+.
T Consensus 58 ~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 58 ALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp HT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred hCCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 3689999999877566778888888999998865543
No 247
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.59 E-value=2.4e+02 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=20.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCC--C----ceeeccC
Q 021262 121 NEPRLLILTDPRTDHQPIKEAALGNI--P----TIAFCDT 154 (315)
Q Consensus 121 ~eP~lLIV~DP~~d~qaI~EAs~lnI--P----tIAL~DT 154 (315)
..|+.||+.+...-..+++.+...|+ | +|++-++
T Consensus 180 ~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 180 DRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 35899998875444445566666554 3 5555554
No 248
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=21.48 E-value=96 Score=26.93 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=22.2
Q ss_pred cCCceEEEeCCCC-------CchhHHHhhhcCCCceeec
Q 021262 121 NEPRLLILTDPRT-------DHQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 121 ~eP~lLIV~DP~~-------d~qaI~EAs~lnIPtIAL~ 152 (315)
..++.|||+.-.. ....++++...++|++|+|
T Consensus 41 ~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 41 DDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp TTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred cCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 4456677765221 1456788888999999997
No 249
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=21.38 E-value=97 Score=25.66 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-
Q 021262 57 KTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 57 kT~ekL~~Aa~~I~~-I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d- 134 (315)
|=...|..|+..+.. ....-.++++|...+.. .+...++..+..- .-+|++..-.+....-++.-+++|.+-....
T Consensus 28 K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~ 105 (172)
T PF00534_consen 28 KGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKK-ELKNLIEKLNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNEGF 105 (172)
T ss_dssp GTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHH-HHHHHHHHTTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS
T ss_pred cCHHHHHHHHHHHHhhcCCCeEEEEEccccccc-ccccccccccccc-cccccccccccccccccccceecccccccccc
Confidence 434445555555443 23444566677444433 3555555554321 1234443332333334566677777754422
Q ss_pred chhHHHhhhcCCCceeec
Q 021262 135 HQPIKEAALGNIPTIAFC 152 (315)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~ 152 (315)
...+.||...|+|+|+--
T Consensus 106 ~~~~~Ea~~~g~pvI~~~ 123 (172)
T PF00534_consen 106 GLSLLEAMACGCPVIASD 123 (172)
T ss_dssp -HHHHHHHHTT-EEEEES
T ss_pred ccccccccccccceeecc
Confidence 568899999999999754
No 250
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.26 E-value=3.4e+02 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=21.9
Q ss_pred ccCCceEEEeCCCC-CchhHHHhhhcCCCcee
Q 021262 120 FNEPRLLILTDPRT-DHQPIKEAALGNIPTIA 150 (315)
Q Consensus 120 f~eP~lLIV~DP~~-d~qaI~EAs~lnIPtIA 150 (315)
+..-|++|+..-.. -...+-||..+|+|+|+
T Consensus 266 ~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~ 297 (365)
T cd03807 266 LNALDVFVLSSLSEGFPNVLLEAMACGLPVVA 297 (365)
T ss_pred HHhCCEEEeCCccccCCcHHHHHHhcCCCEEE
Confidence 46667766543321 14578999999999998
No 251
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=21.19 E-value=3.3e+02 Score=28.52 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCcccc---------------ccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~---------------~~f~e 122 (315)
.+..++..|.+-++| +++++.. ......+.+||+++|+..++.---.|.|-+..- ..+++
T Consensus 189 ~i~~a~~~L~~A~rP--vil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~ 266 (588)
T PRK07525 189 SLAEAAELLSEAKFP--VILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAK 266 (588)
T ss_pred HHHHHHHHHHhCCCC--EEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHHHHh
Confidence 355555555443333 5666553 346788999999999887764222233332211 12578
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+||++..+-+
T Consensus 267 aDlvl~lG~~l~ 278 (588)
T PRK07525 267 ADVVLALGTRLN 278 (588)
T ss_pred CCEEEEECCCCc
Confidence 999999997654
No 252
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=21.12 E-value=2.6e+02 Score=24.56 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCceeecc
Q 021262 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFCD 153 (315)
Q Consensus 122 eP~lLIV~DP~~d--~qaI~EAs~lnIPtIAL~D 153 (315)
.++.||+.....+ ...++++...+||+|.+-.
T Consensus 55 ~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 55 GVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDR 88 (268)
T ss_pred CCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEcc
Confidence 4677777643322 2467888888999999843
No 253
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.96 E-value=4e+02 Score=24.60 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=42.2
Q ss_pred CCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-chhHHHhhhcCCCcee
Q 021262 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-HQPIKEAALGNIPTIA 150 (315)
Q Consensus 75 ~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-~qaI~EAs~lnIPtIA 150 (315)
+.++++++..+.. ..+++.++..+..- .=+|+| ...+ ....+..-|++|+....+. ...+.||..+|+|+|+
T Consensus 227 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~-~v~~~g-~~~~-~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~ 299 (371)
T cd04962 227 PARLLLVGDGPER-SPAERLARELGLQD-DVLFLG-KQDH-VEELLSIADLFLLPSEKESFGLAALEAMACGVPVVA 299 (371)
T ss_pred CceEEEEcCCcCH-HHHHHHHHHcCCCc-eEEEec-Cccc-HHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEE
Confidence 4567777776543 33555666655321 112343 2222 3333566688777653222 4578999999999998
No 254
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.93 E-value=2.3e+02 Score=24.86 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=19.2
Q ss_pred CceEEEeCCCCCchhHHHhhhcCCC------ceeeccC
Q 021262 123 PRLLILTDPRTDHQPIKEAALGNIP------TIAFCDT 154 (315)
Q Consensus 123 P~lLIV~DP~~d~qaI~EAs~lnIP------tIAL~DT 154 (315)
|+.|++.+...-.-+++.+...|+. +|++-|.
T Consensus 178 ~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d~~ 215 (268)
T cd06298 178 PTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNNT 215 (268)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeeccH
Confidence 7888887654433455555555553 5666544
No 255
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.76 E-value=3.4e+02 Score=28.39 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHhCCccccCCccCCccCccc---------------cccccC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVstr---~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~---------------~~~f~e 122 (315)
.+..++..|..-++| +++++.. ....+.+.+||+++|+..++.---.|.|-+-. ...+++
T Consensus 203 ~~~~~~~~L~~A~rP--vIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~ 280 (570)
T PRK06725 203 KLREVAKAISKAKRP--LLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTE 280 (570)
T ss_pred HHHHHHHHHHcCCCc--EEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHh
Confidence 355666666554444 5555543 24678899999999987664322223332211 112578
Q ss_pred CceEEEeCCCCC
Q 021262 123 PRLLILTDPRTD 134 (315)
Q Consensus 123 P~lLIV~DP~~d 134 (315)
.|+||++..+-+
T Consensus 281 aDlil~vG~~~~ 292 (570)
T PRK06725 281 CDLLLALGVRFD 292 (570)
T ss_pred CCEEEEeCCCCC
Confidence 999999998754
No 256
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=20.69 E-value=1.7e+02 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=23.0
Q ss_pred CCceEEEeCCC-CCchhHHHhhhcCCCceeeccCCC
Q 021262 122 EPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDS 156 (315)
Q Consensus 122 eP~lLIV~DP~-~d~qaI~EAs~lnIPtIAL~DTds 156 (315)
..+.||++... .+...++++...|||+|.+ |++.
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i-~~~~ 90 (270)
T cd01545 56 RVDGVILTPPLSDNPELLDLLDEAGVPYVRI-APGT 90 (270)
T ss_pred CCCEEEEeCCCCCccHHHHHHHhcCCCEEEE-ecCC
Confidence 45777776443 2345678888899999987 4443
No 257
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.65 E-value=1.2e+02 Score=27.25 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=25.7
Q ss_pred CccccccccCCceEEEeCCCCCchhHHHhhh-cCCCceeecc
Q 021262 113 TNQMQTSFNEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFCD 153 (315)
Q Consensus 113 TN~~~~~f~eP~lLIV~DP~~d~qaI~EAs~-lnIPtIAL~D 153 (315)
.|..+..-..|||||..+.......+.+... .||||+.+..
T Consensus 65 ~n~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 65 PNYEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCHHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 3555555578999998765433223333433 7899998853
No 258
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.31 E-value=3.9e+02 Score=26.86 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHhCCccccCCccCCccCccccccccCCceEEEeCCCCC-
Q 021262 59 WEKLQMAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (315)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~IlfVstr~---~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d- 134 (315)
++.|.+|++.+..-...-+++++|..+ ...+-+++.++..|..- +=+|+| ......-+..-|++|+.. ..+
T Consensus 308 ~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~-~V~f~G---~~~v~~~l~~aDv~vlpS-~~Eg 382 (475)
T cd03813 308 IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLED-NVKFTG---FQNVKEYLPKLDVLVLTS-ISEG 382 (475)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCC-eEEEcC---CccHHHHHHhCCEEEeCc-hhhc
Confidence 444555555444322335567777653 22334556666665321 113454 222223345667776654 233
Q ss_pred -chhHHHhhhcCCCcee
Q 021262 135 -HQPIKEAALGNIPTIA 150 (315)
Q Consensus 135 -~qaI~EAs~lnIPtIA 150 (315)
...+-||..+|+|+|+
T Consensus 383 ~p~~vlEAma~G~PVVa 399 (475)
T cd03813 383 QPLVILEAMAAGIPVVA 399 (475)
T ss_pred CChHHHHHHHcCCCEEE
Confidence 3578899999999999
No 259
>PRK07586 hypothetical protein; Validated
Probab=20.30 E-value=2.6e+02 Score=28.46 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHhCCccccCCc------cCCccCc--------cccccccCC
Q 021262 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRH------TPGTFTN--------QMQTSFNEP 123 (315)
Q Consensus 61 kL~~Aa~~I~~I~n~~~IlfVst---r~~~q~aV~kfA~~tga~~i~grw------~pGtLTN--------~~~~~f~eP 123 (315)
.+..++..|.+-++| +++++. +......+.+||+++|+..++.-+ --|.|-. .....+++.
T Consensus 186 ~v~~~~~~L~~A~rP--vi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~a 263 (514)
T PRK07586 186 AVEAAAAALRSGEPT--VLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGV 263 (514)
T ss_pred HHHHHHHHHHhcCCC--EEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcC
Confidence 455666666655443 566654 235678899999999998765321 1133321 011236889
Q ss_pred ceEEEeCCC
Q 021262 124 RLLILTDPR 132 (315)
Q Consensus 124 ~lLIV~DP~ 132 (315)
|||+++..+
T Consensus 264 Dlvl~vG~~ 272 (514)
T PRK07586 264 RHLVLVGAK 272 (514)
T ss_pred CEEEEECCC
Confidence 999999976
No 260
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=20.23 E-value=74 Score=32.05 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=40.6
Q ss_pred cCCceEEEeCCC--------------------------CCchhHHHhhhcCCCceeeccCCCCCCcceEEecCCCCCcch
Q 021262 121 NEPRLLILTDPR--------------------------TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (315)
Q Consensus 121 ~eP~lLIV~DP~--------------------------~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnds~~S 174 (315)
..||+||++|.. +.+..|.| ..+|||||||- -|..||-+.-+|| .
T Consensus 173 ~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAIG----VPTVVdA~tI~~D----t 243 (358)
T TIGR01441 173 IKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSK-KTLGVPVIAVG----VPTVVDAVTIASD----T 243 (358)
T ss_pred hCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCH-HHcCCCEEEEc----CCeeechHHHHHH----H
Confidence 589999999932 23667777 45799999984 3557887777775 6
Q ss_pred HHHHHHHHHHHH
Q 021262 175 IGCLFWLLARMV 186 (315)
Q Consensus 175 I~li~~lLaraV 186 (315)
|.+++.-|.++.
T Consensus 244 id~~l~~~~~~~ 255 (358)
T TIGR01441 244 IDYVLKHFGREV 255 (358)
T ss_pred HHHHHHHHHhhh
Confidence 666666665554
No 261
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=20.23 E-value=81 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=17.4
Q ss_pred CceEEEeC-CCCCchhHHHhhhcCCCceee
Q 021262 123 PRLLILTD-PRTDHQPIKEAALGNIPTIAF 151 (315)
Q Consensus 123 P~lLIV~D-P~~d~qaI~EAs~lnIPtIAL 151 (315)
..+||++. -.-+...++-|...+||++.-
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~~i~vi~t 91 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKELGIPVIST 91 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHHT-EEEE-
T ss_pred CCEEEEeCCCCCCHHHHHHHHHCCCEEEEE
Confidence 46777775 555667778888889888753
No 262
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=20.09 E-value=1e+02 Score=30.62 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=26.8
Q ss_pred cCCceEEEeC-CCCCchhHHHhhhc--CCCceeec
Q 021262 121 NEPRLLILTD-PRTDHQPIKEAALG--NIPTIAFC 152 (315)
Q Consensus 121 ~eP~lLIV~D-P~~d~qaI~EAs~l--nIPtIAL~ 152 (315)
..||++|++| |.-|....+.+.+. |||+|=.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi 109 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYI 109 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 4699999999 88888888999998 69987543
No 263
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.06 E-value=4.1e+02 Score=21.97 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHhCCccccCCccCCccCccccccc-cCCceEEEeCCC-CCc
Q 021262 58 TWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF-NEPRLLILTDPR-TDH 135 (315)
Q Consensus 58 T~ekL~~Aa~~I~~I~n~~~IlfVstr~~~q~aV~kfA~~tga~~i~grw~pGtLTN~~~~~f-~eP~lLIV~DP~-~d~ 135 (315)
-.+.+..|++.+..-.++-.+++++...... ...+.....+.. -+-++++..........+ +.-|+++...-. .-.
T Consensus 118 ~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~-~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~ 195 (229)
T cd01635 118 GLDDLIEAFALLKERGPDLKLVIAGDGPERE-YLEELLAALLLL-DRVIFLGGLDPEELLALLLAAADVFVLPSLREGFG 195 (229)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCCChH-HHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcC
Confidence 3344555555554432456777787765432 222323332221 111233332111111122 335666554321 225
Q ss_pred hhHHHhhhcCCCceeec
Q 021262 136 QPIKEAALGNIPTIAFC 152 (315)
Q Consensus 136 qaI~EAs~lnIPtIAL~ 152 (315)
..+.||...|+|+|+--
T Consensus 196 ~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 196 LVVLEAMACGLPVIATD 212 (229)
T ss_pred hHHHHHHhCCCCEEEcC
Confidence 77899999999999743
No 264
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=20.03 E-value=1e+03 Score=24.96 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHhC---CccccCCccCCccCccccccccCCceEEEeCCCCC-----chhHHHhh
Q 021262 74 NPGDIIVQSARPY---GQRAVLKFAKYTH---AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKEAA 142 (315)
Q Consensus 74 n~~~IlfVstr~~---~q~aV~kfA~~tg---a~~i~grw~pGtLTN~~~~~f~eP~lLIV~DP~~d-----~qaI~EAs 142 (315)
+..++.|+++... ..+.-+|+-+-+. ..|-.+.|..|.+-=. .+=..+|++.+..+ ...++|..
T Consensus 462 ~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i-----~~~~~vi~l~~~~~~~~~~~~~~~~~~ 536 (607)
T TIGR01135 462 DKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALI-----DEGLPVVAIAPKDSLFEKTKSNVEEVK 536 (607)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhh-----CCCCCEEEEEeCchHHHHHHHHHHHHH
Confidence 5567888888653 4566667666653 2334567777743221 11123444443332 23678888
Q ss_pred hcCCCceeeccCCCC----CCcceEEecCCCCCcchHHHH--HHHHHHHHHHhhcCC
Q 021262 143 LGNIPTIAFCDTDSP----MRYVDIGIPANNKGKHSIGCL--FWLLARMVLQMRGTI 193 (315)
Q Consensus 143 ~lnIPtIAL~DTds~----~~~VD~pIP~Nnds~~SI~li--~~lLaraVl~~rg~i 193 (315)
..+-.++.|.+.+.. ..-.++.+|..++-...+-++ +++|+..+-..||-.
T Consensus 537 ~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~~l~pl~~~~p~Qlla~~~A~~~G~d 593 (607)
T TIGR01135 537 ARGARVIVFADEDDEFLESVADDVIKLPEVEELLAPIVYTVPLQLLAYHIALAKGTD 593 (607)
T ss_pred HcCCeEEEEECCCcccccccCCcEEECCCCCccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999998654321 223456778765544444333 578888888888764
No 265
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.02 E-value=3.3e+02 Score=24.20 Aligned_cols=120 Identities=6% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-hCCCcEEEEccCchh------HHHHHHHHHHh-CCccccCCccCCccCccccc------cccCCceEEE
Q 021262 63 QMAARVIVAI-ENPGDIIVQSARPYG------QRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQT------SFNEPRLLIL 128 (315)
Q Consensus 63 ~~Aa~~I~~I-~n~~~IlfVstr~~~------q~aV~kfA~~t-ga~~i~grw~pGtLTN~~~~------~f~eP~lLIV 128 (315)
..+++.+..- ...++|+++...+.. .+.+.+..+.. |...+............... +...|+.++.
T Consensus 109 ~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 188 (275)
T cd06320 109 VRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYC 188 (275)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEE
Q ss_pred eCCCCCchhHHHhhhcCC----CceeeccCC-------CCCCcceEEecCCCCCcchHHHHHHHH
Q 021262 129 TDPRTDHQPIKEAALGNI----PTIAFCDTD-------SPMRYVDIGIPANNKGKHSIGCLFWLL 182 (315)
Q Consensus 129 ~DP~~d~qaI~EAs~lnI----PtIAL~DTd-------s~~~~VD~pIP~Nnds~~SI~li~~lL 182 (315)
.+-..-..+++-....|+ .+|++-|+. ++.-..++..+-..-+..++.+++.+|
T Consensus 189 ~~d~~a~~~~~al~~~g~~~di~vig~d~~~~~~~~i~~~~~~~ti~~~~~~~g~~a~~~l~~~l 253 (275)
T cd06320 189 NNDTMALGVVEAVKNAGKQGKVLVVGTDGIPEAYKSIRAGELTATVDSFPALIGEVAMEVMLRAL 253 (275)
T ss_pred CCchhHHHHHHHHHhcCCCCCeEEEecCCCHHHHHHHHcCCeeEEeccCHHHHHHHHHHHHHHHh
Done!